Merge master into haskell-updates

.github/PULL_REQUEST_TEMPLATE.md

@@ -15,11 +15,12 @@ Reviewing guidelines: https://nixos.org/manual/nixpkgs/unstable/#chap-reviewing-
 
 <!-- Please check what applies. Note that these are not hard requirements but merely serve as information for reviewers. -->
 
-- [ ] Tested using sandboxing ([nix.useSandbox](https://nixos.org/nixos/manual/options.html#opt-nix.useSandbox) on NixOS, or option `sandbox` in [`nix.conf`](https://nixos.org/nix/manual/#sec-conf-file) on non-NixOS linux)
 - Built on platform(s)
-   - [ ] NixOS
-   - [ ] macOS
-   - [ ] other Linux distributions
+  - [ ] x86_64-linux
+  - [ ] aarch64-linux
+  - [ ] x86_64-darwin
+  - [ ] aarch64-darwin
+- [ ] For non-Linux: Is `sandbox = true` set in `nix.conf`? (See [Nix manual](https://nixos.org/manual/nix/stable/#sec-conf-file))
 - [ ] Tested via one or more NixOS test(s) if existing and applicable for the change (look inside [nixos/tests](https://github.com/NixOS/nixpkgs/blob/master/nixos/tests))
 - [ ] Tested compilation of all packages that depend on this change using `nix-shell -p nixpkgs-review --run "nixpkgs-review wip"`
 - [ ] Tested execution of all binary files (usually in `./result/bin/`)

maintainers/maintainer-list.nix

@@ -3477,6 +3477,12 @@
       fingerprint = "2F6C 930F D3C4 7E38 6AFA  4EB4 E23C D2DD 36A4 397F";
     }];
   };
+  fabiangd = {
+    email = "fabian.g.droege@gmail.com";
+    name = "Fabian G. Dröge";
+    github = "FabianGD";
+    githubId = 40316600;
+  };
   fabianhauser = {
     email = "fabian.nixos@fh2.ch";
     github = "fabianhauser";

nixos/modules/hardware/onlykey.udev

@@ -1,4 +0,0 @@
-ATTRS{idVendor}=="16c0", ATTRS{idProduct}=="04[789B]?", ENV{ID_MM_DEVICE_IGNORE}="1"
-ATTRS{idVendor}=="16c0", ATTRS{idProduct}=="04[789A]?", ENV{MTP_NO_PROBE}="1"
-SUBSYSTEMS=="usb", ATTRS{idVendor}=="16c0", ATTRS{idProduct}=="04[789ABCD]?", GROUP+="plugdev"
-KERNEL=="ttyACM*", ATTRS{idVendor}=="16c0", ATTRS{idProduct}=="04[789B]?", GROUP+="plugdev"

nixos/modules/hardware/onlykey/onlykey.udev

@@ -0,0 +1,18 @@
+# UDEV Rules for OnlyKey, https://docs.crp.to/linux.html
+ATTRS{idVendor}=="1d50", ATTRS{idProduct}=="60fc", ENV{ID_MM_DEVICE_IGNORE}="1"
+ATTRS{idVendor}=="1d50", ATTRS{idProduct}=="60fc", ENV{MTP_NO_PROBE}="1"
+SUBSYSTEMS=="usb", ATTRS{idVendor}=="1d50", ATTRS{idProduct}=="60fc", MODE:="0666"
+KERNEL=="ttyACM*", ATTRS{idVendor}=="1d50", ATTRS{idProduct}=="60fc", MODE:="0666"
+
+
+# The udev rules were updated upstream without an explanation as you can
+# see in [this comment][commit]. Assuming that hey have changed the
+# idVendor/idProduct, I've kept the old values.
+# TODO: Contact them upstream.
+#
+# [commit]: https://github.com/trustcrypto/trustcrypto.github.io/commit/0bcf928adaea559e75efa02ebd1040f0a15f611d
+#
+ATTRS{idVendor}=="16c0", ATTRS{idProduct}=="04[789B]?", ENV{ID_MM_DEVICE_IGNORE}="1"
+ATTRS{idVendor}=="16c0", ATTRS{idProduct}=="04[789A]?", ENV{MTP_NO_PROBE}="1"
+SUBSYSTEMS=="usb", ATTRS{idVendor}=="16c0", ATTRS{idProduct}=="04[789ABCD]?", GROUP+="plugdev"
+KERNEL=="ttyACM*", ATTRS{idVendor}=="16c0", ATTRS{idProduct}=="04[789B]?", GROUP+="plugdev"

nixos/modules/module-list.nix

@@ -72,7 +72,7 @@
   ./hardware/tuxedo-keyboard.nix
   ./hardware/ubertooth.nix
   ./hardware/usb-wwan.nix
-  ./hardware/onlykey.nix
+  ./hardware/onlykey/default.nix
   ./hardware/opentabletdriver.nix
   ./hardware/sata.nix
   ./hardware/wooting.nix

nixos/modules/services/networking/v2ray.nix

@@ -25,7 +25,7 @@ with lib;
 
           Either <literal>configFile</literal> or <literal>config</literal> must be specified.
 
-          See <link xlink:href="https://v2ray.com/en/configuration/overview.html"/>.
+          See <link xlink:href="https://www.v2fly.org/en_US/config/overview.html"/>.
         '';
       };
 
@@ -47,7 +47,7 @@ with lib;
 
           Either `configFile` or `config` must be specified.
 
-          See <link xlink:href="https://v2ray.com/en/configuration/overview.html"/>.
+          See <link xlink:href="https://www.v2fly.org/en_US/config/overview.html"/>.
         '';
       };
     };

nixos/modules/services/torrent/deluge.nix

@@ -149,7 +149,7 @@ in {
 
         package = mkOption {
           type = types.package;
-          example = literalExample "pkgs.deluge-1_x";
+          example = literalExample "pkgs.deluge-2_x";
           description = ''
             Deluge package to use.
           '';
@@ -184,6 +184,13 @@ in {
       if versionAtLeast config.system.stateVersion "20.09" then
         pkgs.deluge-2_x
       else
+        # deluge-1_x is no longer packaged and this will resolve to an error
+        # thanks to the alias for this name.  This is left here so that anyone
+        # using NixOS older than 20.09 receives that error when they upgrade
+        # and is forced to make an intentional choice to switch to deluge-2_x.
+        # That might be slightly inconvenient but there is no path to
+        # downgrade from 2.x to 1.x so NixOS should not automatically perform
+        # this state migration.
         pkgs.deluge-1_x
     );
 

nixos/tests/deluge.nix

@@ -5,41 +5,6 @@ import ./make-test-python.nix ({ pkgs, ...} : {
   };
 
   nodes = {
-    simple1 = {
-      services.deluge = {
-        enable = true;
-        package = pkgs.deluge-1_x;
-        web = {
-          enable = true;
-          openFirewall = true;
-        };
-      };
-    };
-
-    declarative1 = {
-      services.deluge = {
-        enable = true;
-        package = pkgs.deluge-1_x;
-        openFirewall = true;
-        declarative = true;
-        config = {
-          allow_remote = true;
-          download_location = "/var/lib/deluge/my-download";
-          daemon_port = 58846;
-          listen_ports = [ 6881 6889 ];
-        };
-        web = {
-          enable = true;
-          port =  3142;
-        };
-        authFile = pkgs.writeText "deluge-auth" ''
-          localclient:a7bef72a890:10
-          andrew:password:10
-          user3:anotherpass:5
-        '';
-      };
-    };
-
     simple2 = {
       services.deluge = {
         enable = true;

nixos/tests/shattered-pixel-dungeon.nix

@@ -10,6 +10,7 @@ import ./make-test-python.nix ({ pkgs, ... }: {
     ];
 
     services.xserver.enable = true;
+    sound.enable = true;
     environment.systemPackages = [ pkgs.shattered-pixel-dungeon ];
   };
 

pkgs/applications/audio/praat/default.nix

@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   pname = "praat";
-  version = "6.1.50";
+  version = "6.1.51";
 
   src = fetchFromGitHub {
     owner = "praat";
     repo = "praat";
     rev = "v${version}";
-    sha256 = "11cw4292pml71hdnfy8y91blwyh45dyam1ywr09355zk44c5njpq";
+    sha256 = "sha256-4goZRNKNFrfKRbGODJMhN6DyOh8U3+nWRDF1VMT7I1E=";
   };
 
   configurePhase = ''

pkgs/applications/audio/sidplayfp/default.nix

@@ -16,13 +16,13 @@
 
 stdenv.mkDerivation rec {
   pname = "sidplayfp";
-  version = "2.2.0";
+  version = "2.2.1";
 
   src = fetchFromGitHub {
     owner = "libsidplayfp";
     repo = "sidplayfp";
     rev = "v${version}";
-    sha256 = "sha256-hN7225lhuYyo4wPDiiEc9FaPg90pZ13mLw93V8tb/P0=";
+    sha256 = "sha256-IlPZmZpWxMaArkRnqu6JCGxiHU7JczRxiySqzAopfxc=";
   };
 
   nativeBuildInputs = [ autoreconfHook perl pkg-config ];

pkgs/applications/blockchains/polkadot/default.nix

@@ -7,16 +7,16 @@
 }:
 rustPlatform.buildRustPackage rec {
   pname = "polkadot";
-  version = "0.9.8";
+  version = "0.9.9";
 
   src = fetchFromGitHub {
     owner = "paritytech";
     repo = "polkadot";
     rev = "v${version}";
-    sha256 = "sha256-5PNogoahAZUjIlQsVXwm7j5OmP3/uEEdV0vrIDXXBx8=";
+    sha256 = "sha256-GsGa2y718qWQlP0pLy8X3mVsFpNNnOTVQZpp4+e1RhA=";
   };
 
-  cargoSha256 = "0iikys90flzmnnb6l2wzag8mp91p6z9y7rjzym2sd6m7xhgbc1x6";
+  cargoSha256 = "03lnw61pgp88iwz2gbcp8y3jvz6v94cn0ynjz6snb9jq88gf25dz";
 
   nativeBuildInputs = [ clang ];
 

pkgs/applications/editors/emacs/elisp-packages/org-mac-link/default.nix

@@ -1,14 +1,15 @@
 { lib, stdenv, fetchurl, emacs }:
 
 stdenv.mkDerivation {
-  name = "org-mac-link-1.2";
+  pname = "org-mac-link";
+  version = "1.2";
 
   src = fetchurl {
     url = "https://raw.githubusercontent.com/stuartsierra/org-mode/master/contrib/lisp/org-mac-link.el";
     sha256 = "1gkzlfbhg289r1hbqd25szan1wizgk6s99h9xxjip5bjv0jywcx5";
   };
 
-  phases = [ "buildPhase" "installPhase"];
+  dontUnpack = true;
 
   buildInputs = [ emacs ];
 

pkgs/applications/editors/emacs/elisp-packages/perl-completion/default.nix

@@ -8,7 +8,7 @@ stdenv.mkDerivation {
     sha256 = "0x6qsgs4hm87k0z9q3g4p6508kc3y123j5jayll3jf3lcl2vm6ks";
   };
 
-  phases = [ "installPhase"];
+  dontUnpack = true;
 
   installPhase = ''
     install -d $out/share/emacs/site-lisp

pkgs/applications/editors/emacs/elisp-packages/rect-mark/default.nix

@@ -1,14 +1,15 @@
 { lib, stdenv, fetchurl, emacs }:
 
 stdenv.mkDerivation {
-  name = "rect-mark-1.4";
+  pname = "rect-mark";
+  version = "1.4";
 
   src = fetchurl {
     url = "http://emacswiki.org/emacs/download/rect-mark.el";
     sha256 = "0pyyg53z9irh5jdfvh2qp4pm8qrml9r7lh42wfmdw6c7f56qryh8";
   };
 
-  phases = [ "buildPhase" "installPhase"];
+  dontUnpack = true;
 
   buildInputs = [ emacs ];
 
@@ -18,8 +19,10 @@ stdenv.mkDerivation {
   '';
 
   installPhase = ''
+    runHook preInstall
     install -d $out/share/emacs/site-lisp
     install rect-mark.el* $out/share/emacs/site-lisp
+    runHook postInstall
   '';
 
   meta = {

pkgs/applications/editors/vscode/vscode.nix

@@ -39,7 +39,7 @@ in
 
     sourceRoot = "";
 
-    updateScript = ./update-vscodium.sh;
+    updateScript = ./update-vscode.sh;
 
     meta = with lib; {
       description = ''

pkgs/applications/graphics/gimp/plugins/default.nix

@@ -53,8 +53,13 @@ let
   );
 
   scriptDerivation = {src, ...}@attrs : pluginDerivation ({
-    phases = [ "extraLib" "installPhase" ];
-    installPhase = "installScripts ${src}";
+    prePhases = "extraLib";
+    dontUnpack = true;
+    installPhase = ''
+      runHook preInstall
+      installScripts ${src}
+      runHook postInstall
+    '';
   } // attrs);
 in
 {

pkgs/applications/graphics/hydrus/default.nix

@@ -10,14 +10,14 @@
 
 python3Packages.buildPythonPackage rec {
   pname = "hydrus";
-  version = "450";
+  version = "451";
   format = "other";
 
   src = fetchFromGitHub {
     owner = "hydrusnetwork";
     repo = "hydrus";
     rev = "v${version}";
-    sha256 = "sha256-sMy5Yv7PGK3U/XnB8IrutSqSBiq1cfD6pAO5BxbWG5A=";
+    sha256 = "sha256-HoaXbnhwh6kDWgRFVs+VttzIY3MaxriteFTE1fwBUYs=";
   };
 
   nativeBuildInputs = [

pkgs/applications/misc/archivy/default.nix

@@ -1,23 +1,55 @@
-{ lib
-, buildPythonApplication
-, fetchPypi
-, appdirs
-, attrs
-, beautifulsoup4
-, click-plugins
-, elasticsearch
-, flask-compress
-, flask_login
-, flask_wtf
-, html2text
-, python-dotenv
-, python-frontmatter
-, requests
-, tinydb
-, validators
-, werkzeug
-, wtforms
-}:
+{ lib, stdenv, python3, fetchPypi }:
+
+let
+  defaultOverrides = [
+    (self: super: {
+      flask = super.flask.overridePythonAttrs (oldAttrs: rec {
+        version = "1.1.2";
+        pname = "Flask";
+
+        src = super.fetchPypi {
+          inherit pname version;
+          sha256 = "sha256-Tvoa4tfJhlr0iYbeiuuFBL8yx/PW/ck1PTSyH0sScGA=";
+        };
+
+        checkInputs = [ self.pytest ];
+        propagatedBuildInputs = with self; [ itsdangerous click werkzeug jinja2 ];
+
+        doCheck = false;
+      });
+    })
+
+    (self: super: {
+      flask_login = super.flask_login.overridePythonAttrs (oldAttrs: rec {
+        pname = "Flask";
+        version = "0.5.0";
+
+        src = fetchPypi {
+          inherit pname version;
+          sha256 = "6d33aef15b5bcead780acc339464aae8a6e28f13c90d8b1cf9de8b549d1c0b4b";
+        };
+        doCheck = false;
+      });
+    })
+  ];
+
+  mkOverride = attrname: version: sha256:
+    self: super: {
+      ${attrname} = super.${attrname}.overridePythonAttrs (oldAttrs: {
+        inherit version;
+        src = oldAttrs.src.override {
+          inherit version sha256;
+        };
+      });
+    };
+
+  py = python3.override {
+    # Put packageOverrides at the start so they are applied after defaultOverrides
+    packageOverrides = lib.foldr lib.composeExtensions (self: super: { }) (defaultOverrides);
+  };
+
+in
+with py.pkgs;
 
 buildPythonApplication rec {
   pname = "archivy";
@@ -40,8 +72,7 @@ buildPythonApplication rec {
       --replace 'validators ==' 'validators >=' \
       --replace 'tinydb ==' 'tinydb >=' \
       --replace 'Flask_WTF == 0.14.3' 'Flask_WTF' \
-      --replace 'Werkzeug ==' 'Werkzeug >=' \
-      --replace 'Flask ==' 'Flask >='
+      --replace 'Werkzeug ==' 'Werkzeug >='
   '';
 
   propagatedBuildInputs = [
@@ -57,6 +88,7 @@ buildPythonApplication rec {
     python-dotenv
     python-frontmatter
     requests
+    setuptools
     tinydb
     validators
     werkzeug

pkgs/applications/misc/pueue/default.nix

@@ -2,16 +2,16 @@
 
 rustPlatform.buildRustPackage rec {
   pname = "pueue";
-  version = "0.12.1";
+  version = "0.12.2";
 
   src = fetchFromGitHub {
     owner = "Nukesor";
     repo = pname;
     rev = "v${version}";
-    sha256 = "sha256-wcOF34GzlB6YKISkjDgYgsaN1NmWBMIntfT23A6byx8=";
+    sha256 = "sha256-umVIMboKG6cZ1JOcfhOEZTQwPLxC2LdlGUa4U6LXh/g=";
   };
 
-  cargoSha256 = "sha256-aW1VliL7QQm9gMeM6N+SroHlgqI3F7MX0EzcuEzcJnQ=";
+  cargoSha256 = "sha256-nppwwO0dBXYG/ZJMNWGnl7J77GDI7+NV8QAmfcbpJD4=";
 
   nativeBuildInputs = [ installShellFiles ];
 

pkgs/applications/networking/browsers/chromium/upstream-info.json

@@ -18,9 +18,9 @@
     }
   },
   "beta": {
-    "version": "93.0.4577.42",
-    "sha256": "180lywcimhlcwbxmn37814hd96bqnqrp3whbzv6ln3hwca2da4hl",
-    "sha256bin64": "19px9h9vf9p2ipirv8ryaxvhfkls0nfiw7jz1d4h61r3r6ay5fc4",
+    "version": "93.0.4577.51",
+    "sha256": "0b3mx5ns4pbrwc7s2iz8ffv8lhay6p9gj0dnsd1qzxgqwgrv37h5",
+    "sha256bin64": "1b8ypv14c5ky789dm17czv4yf7v21lwhnf2ygkdzryvd3i056nsz",
     "deps": {
       "gn": {
         "version": "2021-07-08",

pkgs/applications/networking/browsers/palemoon/default.nix

@@ -52,14 +52,14 @@ let
 in
 stdenv.mkDerivation rec {
   pname = "palemoon";
-  version = "29.3.0";
+  version = "29.4.0.1";
 
   src = fetchFromGitHub {
     githubBase = "repo.palemoon.org";
     owner = "MoonchildProductions";
     repo = "Pale-Moon";
     rev = "${version}_Release";
-    sha256 = "1q0w1ffmdfk22df4p2ks4n55zmz44ir8fbcdn5a5h4ihy73nf6xp";
+    sha256 = "1qzsryhlxvh9xx9j7s4dmxv575z13wdx8iigj8r0pdmg5kx6rpkb";
     fetchSubmodules = true;
   };
 

pkgs/applications/networking/cluster/qbec/default.nix

@@ -2,16 +2,16 @@
 
 buildGoModule rec {
   pname = "qbec";
-  version = "0.14.2";
+  version = "0.14.6";
 
   src = fetchFromGitHub {
     owner = "splunk";
     repo = "qbec";
     rev = "v${version}";
-    sha256 = "sha256-F5xnW9069Xrl6isvmeYtfTZUZSiSq47HLs5/p3HCf6E=";
+    sha256 = "sha256-zsabEYmbWW6lwqyqpPIgCmA4PE6F5Byb8KT/PlLSlvY=";
   };
 
-  vendorSha256 = "sha256-wtpXqIixjRYYSIPe43Q5627g6mu05WdvwCi9cXVgCBs=";
+  vendorSha256 = "sha256-VOBRQJzATaY9DNRhZvYTRpoISikbzUAwS/1hUfce/44=";
 
   doCheck = false;
 

pkgs/applications/networking/cluster/sonobuoy/default.nix

@@ -1,11 +1,11 @@
 { lib, buildGoModule, fetchFromGitHub }:
 
 # SHA of ${version} for the tool's help output. Unfortunately this is needed in build flags.
-let rev = "f6e19140201d6bf2f1274bf6567087bc25154210";
+let rev = "981a3ffd4368600eb1a5bca3f12a251e80895d37";
 in
 buildGoModule rec {
   pname = "sonobuoy";
-  version = "0.50.0"; # Do not forget to update `rev` above
+  version = "0.53.2"; # Do not forget to update `rev` above
 
   buildFlagsArray =
     let t = "github.com/vmware-tanzu/sonobuoy";
@@ -17,13 +17,13 @@ buildGoModule rec {
     '';
 
   src = fetchFromGitHub {
-    sha256 = "sha256-LhprsDlWZjNRE6pu7V9WBszy/+bNpn5KoRopIoWvdsg=";
+    sha256 = "sha256-8bUZsknG1Z2TKWwtuJtnauK8ibikGphl3oiLXT3PZzY=";
     rev = "v${version}";
     repo = "sonobuoy";
     owner = "vmware-tanzu";
   };
 
-  vendorSha256 = "sha256-0Vx74nz0djJB12UPybo2Z8KVpSyKHuKPFymh/Rlpv88=";
+  vendorSha256 = "sha256-Lkwv95BZa7nFEXk1KcwXIRVpj9DZmqnWjkdrZkO/k24=";
 
   subPackages = [ "." ];
 

pkgs/applications/networking/cluster/terragrunt/default.nix

@@ -2,13 +2,13 @@
 
 buildGoModule rec {
   pname = "terragrunt";
-  version = "0.31.3";
+  version = "0.31.5";
 
   src = fetchFromGitHub {
     owner = "gruntwork-io";
     repo = pname;
     rev = "v${version}";
-    sha256 = "sha256-I7S7B+mQxLdMWiLAkUIW39kXGU9k647OOhHysYotkfU=";
+    sha256 = "sha256-yovrqDGvw+GwzEiuveO2eLnP7mVVY5CQB0agzxIsHto=";
   };
 
   vendorSha256 = "sha256-CVWg2SvRO//xye05G3svGeqgaTKdRcoERrR7Tp0JZUo=";

pkgs/applications/networking/mailreaders/thunderbird-bin/release_sources.nix

@@ -1,655 +1,655 @@
 {
-  version = "91.0";
+  version = "91.0.1";
   sources = [
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.0/linux-x86_64/af/thunderbird-91.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.0.1/linux-x86_64/af/thunderbird-91.0.1.tar.bz2";
       locale = "af";
       arch = "linux-x86_64";
-      sha256 = "6fb57813f9f0568f3f97aa512c9b94df540e4e2aebdadb11994237bdf167a929";
+      sha256 = "c2aabfe9a1ff2a196d08f80ca89468523edbcda6e756449cc1f4ae765b7dce62";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.0/linux-x86_64/ar/thunderbird-91.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.0.1/linux-x86_64/ar/thunderbird-91.0.1.tar.bz2";
       locale = "ar";
       arch = "linux-x86_64";
-      sha256 = "398ac9528f19d2457689eb0d4579cfaeb21fe7d0be4a40a66a4216fd6d1e5f16";
+      sha256 = "c9cd4f45a70761e00e877108c53c504305075bba03c9ec0a8cc3324757c66547";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.0/linux-x86_64/ast/thunderbird-91.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.0.1/linux-x86_64/ast/thunderbird-91.0.1.tar.bz2";
       locale = "ast";
       arch = "linux-x86_64";
-      sha256 = "2ac99b80f8ba4f36406fc9df3eaf6f9290f89a23e99736820b5e9fdc14b549ab";
+      sha256 = "2a531361709c5e0aab20f28b6edc6e58d4b1612c295320dbe903d8d5ada70004";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.0/linux-x86_64/be/thunderbird-91.0.tar.bz2";
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       locale = "pl";
       arch = "linux-i686";
-      sha256 = "de159419d5e0123379604cae0e482d8cb3ddd8aa2d879113142e87f809ae3aeb";
+      sha256 = "93ad29d7c97d501587bcf333df7bfe0e9692d42269914ffad5217ace78a2cb2f";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.0/linux-i686/pt-BR/thunderbird-91.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.0.1/linux-i686/pt-BR/thunderbird-91.0.1.tar.bz2";
       locale = "pt-BR";
       arch = "linux-i686";
-      sha256 = "7b58d79a7710669427076bba99d3d6b32e08643a77f722bdc6b89378c943b497";
+      sha256 = "a1ee15db8610e2cd3d21e817291a8fa492d6811fd566ad75b202fb420b0ed4d4";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.0/linux-i686/pt-PT/thunderbird-91.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.0.1/linux-i686/pt-PT/thunderbird-91.0.1.tar.bz2";
       locale = "pt-PT";
       arch = "linux-i686";
-      sha256 = "dbbca7893c6d504b493936d1ca364e52da45a71cab69a59ec0352ca68d47b0a7";
+      sha256 = "5fb985c57660547e5c22e4e2f31dccf1db140af149bbaf24ec7003c7249ddc71";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.0/linux-i686/rm/thunderbird-91.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.0.1/linux-i686/rm/thunderbird-91.0.1.tar.bz2";
       locale = "rm";
       arch = "linux-i686";
-      sha256 = "98649ae64eb9a8d93f7ecfd699e02e8eae5ac0a2a2e837f0704df7772ed44097";
+      sha256 = "acf3cdcd21d10339f6e6e61880a36c9c63f3d5e06aa5742858bfcced8f562094";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.0/linux-i686/ro/thunderbird-91.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.0.1/linux-i686/ro/thunderbird-91.0.1.tar.bz2";
       locale = "ro";
       arch = "linux-i686";
-      sha256 = "479d886c83f53bcb96ea12ddd27f7134fdfa482800337f9c7cef8d8762710839";
+      sha256 = "584a892f959800744bdf06e1b181c78b71526f12076b1a299bace0bd96c2a741";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.0/linux-i686/ru/thunderbird-91.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.0.1/linux-i686/ru/thunderbird-91.0.1.tar.bz2";
       locale = "ru";
       arch = "linux-i686";
-      sha256 = "c371992e54bf74571596d4b295a10fb00495017c3e40665e6d3d698d9da03bc4";
+      sha256 = "3f24b228ed6caef730dd36c2e22620b7e4b8365de0682017104b57081b1b27ae";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.0/linux-i686/sk/thunderbird-91.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.0.1/linux-i686/sk/thunderbird-91.0.1.tar.bz2";
       locale = "sk";
       arch = "linux-i686";
-      sha256 = "95a4e41e6be48bdc4da11864b02d326a85a0dc29faf4acd2297dff03b874e8f7";
+      sha256 = "e8c317d088bb6b4ae601e439b45abde1641f152edfc64c1da5f479472c4e027d";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.0/linux-i686/sl/thunderbird-91.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.0.1/linux-i686/sl/thunderbird-91.0.1.tar.bz2";
       locale = "sl";
       arch = "linux-i686";
-      sha256 = "36e702b13f5c3a75625fb0dfc15403438282acda703c372c69f9c865a26baba3";
+      sha256 = "9e0d376b0694e7007d889e8d6898bfef68734f52dcbe62ed5b141870ea6fd564";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.0/linux-i686/sq/thunderbird-91.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.0.1/linux-i686/sq/thunderbird-91.0.1.tar.bz2";
       locale = "sq";
       arch = "linux-i686";
-      sha256 = "0ff2b572ab9751eab4791f960d0f1d4b6658f296251fefb5987b92317c8521e8";
+      sha256 = "e2d87bfe4e89d6546e6fc55960426028036574758ddf97e6e039f6a5f7d43c10";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.0/linux-i686/sr/thunderbird-91.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.0.1/linux-i686/sr/thunderbird-91.0.1.tar.bz2";
       locale = "sr";
       arch = "linux-i686";
-      sha256 = "37798d5093c0f6846984e830fe8a371e7facc2e710874b40774f038aeda7a6ea";
+      sha256 = "871274312d5af4f1810017bc49ddccffea6d0b08276bf035ced5a39619c522e3";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.0/linux-i686/sv-SE/thunderbird-91.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.0.1/linux-i686/sv-SE/thunderbird-91.0.1.tar.bz2";
       locale = "sv-SE";
       arch = "linux-i686";
-      sha256 = "71e34f95f97ea4cf2e213d60f170ade0de5f199b37ba103ee08b2de568d9af7f";
+      sha256 = "d3280b7cc1638057be5edc05bc0f7e76cdd2440e4bd713a8b1da4db0d4f4c119";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.0/linux-i686/th/thunderbird-91.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.0.1/linux-i686/th/thunderbird-91.0.1.tar.bz2";
       locale = "th";
       arch = "linux-i686";
-      sha256 = "385b0dc2137c97976d7cb9f49502f13723865071099c97d0cb9b73cac18fe853";
+      sha256 = "4b1dd2d7c478bc0fec0d8379b025170ce569e4043b06dc08fbf7a97fda93dc0e";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.0/linux-i686/tr/thunderbird-91.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.0.1/linux-i686/tr/thunderbird-91.0.1.tar.bz2";
       locale = "tr";
       arch = "linux-i686";
-      sha256 = "6dd8bb7b49ece0b4b21216bbe4be831bc49c6bcf44d973d5bf4c37372aa6285d";
+      sha256 = "3268c493d84db8eb4c8373959548a0828ce66a4b08d7b6f8175c9acabc092a7e";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.0/linux-i686/uk/thunderbird-91.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.0.1/linux-i686/uk/thunderbird-91.0.1.tar.bz2";
       locale = "uk";
       arch = "linux-i686";
-      sha256 = "2bd6803f23fc17b9530055e912e2ff6cdc0284f1c656965a88b50d6adee67e08";
+      sha256 = "3c3cd733adaa0f61cc489141d6eee89b2efd50b7afd816658cae0f93dfd983a6";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.0/linux-i686/uz/thunderbird-91.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.0.1/linux-i686/uz/thunderbird-91.0.1.tar.bz2";
       locale = "uz";
       arch = "linux-i686";
-      sha256 = "72e0727bb25cfc0d73b81cf782d4e37e6d72f0807284c8f057aa220690047185";
+      sha256 = "75c7e6e1544b8cd715185a1478a67a7129921fcb45e100e8b707317712fa1b90";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.0/linux-i686/vi/thunderbird-91.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.0.1/linux-i686/vi/thunderbird-91.0.1.tar.bz2";
       locale = "vi";
       arch = "linux-i686";
-      sha256 = "43a6b740ee93cc0ce99ba2d9fb6ddbae1004c53d209bdb3a4b92c5f685d7bf62";
+      sha256 = "d1977564fe4bcc3e3d105670f0ceca224437656dfc4f6b1ea23e46348fe0892d";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.0/linux-i686/zh-CN/thunderbird-91.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.0.1/linux-i686/zh-CN/thunderbird-91.0.1.tar.bz2";
       locale = "zh-CN";
       arch = "linux-i686";
-      sha256 = "bdfc475d49cd201f8685fab59e273425741335d7c1f83abce7c79cca45116473";
+      sha256 = "11b2079558194aad670fcc38e9a8bf2b36351852d2faeca15230a9ac0325da95";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.0/linux-i686/zh-TW/thunderbird-91.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.0.1/linux-i686/zh-TW/thunderbird-91.0.1.tar.bz2";
       locale = "zh-TW";
       arch = "linux-i686";
-      sha256 = "2c3a20d639c793853ae57e850f15910ea3a9d35b1900ae8dc4d14689df080c42";
+      sha256 = "2c9472a29dbd96fbbcbe7d9e23a112c9c894eee62dcb0ab08387d04e1f2741c4";
     }
     ];
 }

pkgs/applications/networking/mailreaders/thunderbird/packages.nix

@@ -10,12 +10,12 @@ in
 rec {
   thunderbird = common rec {
     pname = "thunderbird";
-    version = "91.0";
+    version = "91.0.1";
     application = "comm/mail";
     binaryName = pname;
     src = fetchurl {
       url = "mirror://mozilla/thunderbird/releases/${version}/source/thunderbird-${version}.source.tar.xz";
-      sha512 = "f3fcaff97b37ef41850895e44fbd2f42b0f1cb982542861bef89ef7ee606c6332296d61f666106be9455078933a2844c46bf243b71cc4364d9ff457d9c808a7a";
+      sha512 = "54e1f3233c544cf28302496512aaf2a5fb5486aab070680e82cefbdd1d12a33867c638ced61e43958bae47e40ff551592a2cf4d537f98c22ed1df31c5d5bb09c";
     };
     patches = [
       ./no-buildconfig-90.patch

pkgs/applications/networking/p2p/deluge/1.nix

@@ -1,42 +0,0 @@
-{ lib, stdenv, fetchurl, fetchpatch, intltool, libtorrent-rasterbar, pythonPackages }:
-
-pythonPackages.buildPythonPackage rec {
-  pname = "deluge";
-  version = "1.3.15";
-
-  src = fetchurl {
-    url = "http://download.deluge-torrent.org/source/${pname}-${version}.tar.bz2";
-    sha256 = "1467b9hmgw59gf398mhbf40ggaka948yz3afh6022v753c9j7y6w";
-  };
-
-  patches = [
-    # Fix preferences when built against libtorrent >=0.16
-    (fetchpatch {
-      url = "https://git.deluge-torrent.org/deluge/patch/?id=38d7b7cdfde3c50d6263602ffb03af92fcbfa52e";
-      sha256 = "0la3i0lkj6yv4725h4kbd07mhfwcb34w7prjl9gxg12q7px6c31d";
-    })
-  ];
-
-  propagatedBuildInputs = with pythonPackages; [
-    pyGtkGlade twisted Mako chardet pyxdg pyopenssl service-identity
-    libtorrent-rasterbar.dev libtorrent-rasterbar.python setuptools
-  ];
-
-  nativeBuildInputs = [ intltool ];
-
-  postInstall = ''
-     mkdir -p $out/share/applications
-     cp -R deluge/data/pixmaps $out/share/
-     cp -R deluge/data/icons $out/share/
-     cp deluge/data/share/applications/deluge.desktop $out/share/applications
-  '';
-
-  meta = with lib; {
-    homepage = "https://deluge-torrent.org";
-    description = "Torrent client";
-    license = licenses.gpl3Plus;
-    maintainers = with maintainers; [ domenkozar ebzzry ];
-    broken = stdenv.isDarwin;
-    platforms = platforms.all;
-  };
-}

pkgs/applications/networking/sniffers/sngrep/default.nix

@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   pname = "sngrep";
-  version = "1.4.8";
+  version = "1.4.9";
 
   src = fetchFromGitHub {
     owner = "irontec";
     repo = pname;
     rev = "v${version}";
-    sha256 = "0lnwsw9x4y4lr1yh749y24f71p5zsghwh5lp28zqfanw025mipf2";
+    sha256 = "sha256-92wPRDFSoIOYFv3XKdsuYH8j3D8kXyg++q6VpIIMGDg=";
   };
 
   buildInputs = [

pkgs/applications/office/libreoffice/default.nix

@@ -63,8 +63,6 @@ in (mkDrv rec {
     "-fno-visibility-inlines-hidden" # https://bugs.documentfoundation.org/show_bug.cgi?id=78174#c10
   ];
 
-  patches = [ ./xdg-open-brief.patch ];
-
   tarballPath = "external/tarballs";
 
   postUnpack = ''

pkgs/applications/office/libreoffice/src-fresh/override.nix

@@ -7,4 +7,5 @@ attrs:
   configureFlags = attrs.configureFlags ++ [
     (lib.enableFeature kdeIntegration "kf5")
   ];
+  patches = [ ../xdg-open-brief.patch ]; # drop this when switching fresh to 7.2.0
 }

pkgs/applications/office/libreoffice/src-still/override.nix

@@ -7,4 +7,5 @@ attrs:
   configureFlags = attrs.configureFlags ++ [
     (lib.enableFeature kdeIntegration "kf5")
   ];
+  patches = [ ../xdg-open-brief.patch ];
 }

pkgs/applications/office/portfolio/default.nix

@@ -24,11 +24,11 @@ let
 in
 stdenv.mkDerivation rec {
   pname = "PortfolioPerformance";
-  version = "0.54.1";
+  version = "0.54.2";
 
   src = fetchurl {
     url = "https://github.com/buchen/portfolio/releases/download/${version}/PortfolioPerformance-${version}-linux.gtk.x86_64.tar.gz";
-    sha256 = "16sv938sdbs01byqwngrfqmzb81zfhvk72ar53l68cg8qjvzs5ml";
+    sha256 = "sha256-fKUKVeR0q8oylpwF4d3jnkON4vbQ80Fc9WYWStb67ek=";
   };
 
   nativeBuildInputs = [

pkgs/applications/science/chemistry/pymol/default.nix

@@ -1,8 +1,18 @@
-{ lib, fetchurl, fetchFromGitHub, makeDesktopItem
-, python3, python3Packages
-, glew, glm, freeglut, libpng, libxml2, tk, freetype, msgpack }:
-
-
+{ lib
+, fetchFromGitHub
+, makeDesktopItem
+, python3
+, python3Packages
+, netcdf
+, glew
+, glm
+, freeglut
+, libpng
+, libxml2
+, tk
+, freetype
+, msgpack
+}:
 let
   pname = "pymol";
   description = "A Python-enhanced molecular graphics tool";
@@ -20,15 +30,15 @@ let
 in
 python3Packages.buildPythonApplication rec {
   inherit pname;
-  version = "2.3.0";
+  version = "2.5.0";
   src = fetchFromGitHub {
     owner = "schrodinger";
     repo = "pymol-open-source";
     rev = "v${version}";
-    sha256 = "175cqi6gfmvv49i3ws19254m7ljs53fy6y82fm1ywshq2h2c93jh";
+    sha256 = "sha256-JdsgcVF1w1xFPZxVcyS+GcWg4a1Bd4SvxFOuSdlz9SM=";
   };
 
-  buildInputs = [ python3Packages.numpy glew glm freeglut libpng libxml2 tk freetype msgpack ];
+  buildInputs = [ python3Packages.numpy glew glm freeglut libpng libxml2 tk freetype msgpack netcdf ];
   NIX_CFLAGS_COMPILE = "-I ${libxml2.dev}/include/libxml2";
   hardeningDisable = [ "format" ];
 
@@ -49,7 +59,7 @@ python3Packages.buildPythonApplication rec {
   '';
 
   meta = with lib; {
-    description = description;
+    inherit description;
     homepage = "https://www.pymol.org/";
     license = licenses.mit;
     maintainers = with maintainers; [ samlich ];

pkgs/applications/science/logic/why3/default.nix

@@ -1,12 +1,12 @@
 { callPackage, fetchurl, fetchpatch, lib, stdenv
 , ocamlPackages, coqPackages, rubber, hevea, emacs }:
 
-stdenv.mkDerivation {
+stdenv.mkDerivation rec {
   pname = "why3";
   version = "1.4.0";
 
   src = fetchurl {
-    url = "https://gforge.inria.fr/frs/download.php/file/38425/why3-1.4.0.tar.gz";
+    url = "https://gforge.inria.fr/frs/download.php/file/38425/why3-${version}.tar.gz";
     sha256 = "0lw0cpx347zz9vvwqibmbxgs80fsd16scgk3isscvwxnajpc3rv8";
   };
 

pkgs/applications/science/logic/why3/with-provers.nix

@@ -1,31 +1,30 @@
 { stdenv, makeWrapper, runCommand, symlinkJoin, why3 }:
 provers:
 let configAwkScript = runCommand "why3-conf.awk" { inherit provers; }
-    ''
-      for p in $provers; do
-        for b in $p/bin/*; do
-          BASENAME=$(basename $b)
-          echo "/^command =/{ gsub(\"$BASENAME\", \"$b\") }" >> $out
-        done
+  ''
+    for p in $provers; do
+      for b in $p/bin/*; do
+        BASENAME=$(basename $b)
+        echo "/^command =/{ gsub(\"$BASENAME\", \"$b\") }" >> $out
       done
-      echo '{ print }' >> $out
-    '';
-in stdenv.mkDerivation {
+    done
+    echo '{ print }' >> $out
+  '';
+in
+stdenv.mkDerivation {
   name = "${why3.name}-with-provers";
 
-  phases = [ "buildPhase" "installPhase" ];
-
   nativeBuildInputs = [ makeWrapper ];
   buildInputs = [ why3 ] ++ provers;
 
   buildPhase = ''
-      mkdir -p $out/share/why3/
-      why3 config --detect-provers -C $out/share/why3/why3.conf
-      awk -i inplace -f ${configAwkScript} $out/share/why3/why3.conf
+    mkdir -p $out/share/why3/
+    why3 config --detect-provers -C $out/share/why3/why3.conf
+    awk -i inplace -f ${configAwkScript} $out/share/why3/why3.conf
   '';
 
   installPhase = ''
-      mkdir -p $out/bin
-      makeWrapper ${why3}/bin/why3 $out/bin/why3 --add-flags "--extra-config $out/share/why3/why3.conf"
+    mkdir -p $out/bin
+    makeWrapper ${why3}/bin/why3 $out/bin/why3 --add-flags "--extra-config $out/share/why3/why3.conf"
   '';
 }

pkgs/applications/science/math/lp_solve/default.nix

@@ -1,40 +1,45 @@
-{ lib, stdenv, fetchurl }:
+{ lib, stdenv, fetchurl, cctools, fixDarwinDylibNames }:
 
 stdenv.mkDerivation rec {
 
   pname = "lp_solve";
-  version = "5.5.2.5";
+  version = "5.5.2.11";
 
   src = fetchurl {
     url = "mirror://sourceforge/project/lpsolve/lpsolve/${version}/lp_solve_${version}_source.tar.gz";
-    sha256 = "12pj1idjz31r7c2mb5w03vy1cmvycvbkx9z29s40qdmkp1i7q6i0";
+    sha256 = "sha256-bUq/9cxqqpM66ObBeiJt8PwLZxxDj2lxXUHQn+gfkC8=";
   };
 
-  patches = [ ./isnan.patch ];
+  nativeBuildInputs = lib.optionals stdenv.isDarwin [
+    cctools
+    fixDarwinDylibNames
+  ];
 
-  buildCommand = ''
-    . $stdenv/setup
-    tar xvfz $src
-    (
-    cd lp_solve*
-    eval patchPhase
-    )
-    (
-    cd lp_solve*/lpsolve55
-    bash ccc
-    mkdir -pv $out/lib
-    find bin -type f -exec cp -v "{}" $out/lib \;
-    )
-    (
-    cd lp_solve*/lp_solve
-    bash ccc
-    mkdir -pv $out/bin
-    find bin -type f -exec cp -v "{}" $out/bin \;
-    )
-    (
-    mkdir -pv $out/include
-    cp -v lp_solve*/*.h $out/include
-    )
+  dontConfigure = true;
+
+  buildPhase = let
+    ccc = if stdenv.isDarwin then "ccc.osx" else "ccc";
+  in ''
+    runHook preBuild
+
+    (cd lpsolve55 && bash -x -e ${ccc})
+    (cd lp_solve  && bash -x -e ${ccc})
+
+    runHook postBuild
+  '';
+
+  installPhase = ''
+    runHook preInstall
+
+    install -d -m755 $out/bin $out/lib $out/include/lpsolve
+    install -m755 lp_solve/bin/*/lp_solve -t $out/bin
+    install -m644 lpsolve55/bin/*/liblpsolve* -t $out/lib
+    install -m644 lp_*.h -t $out/include/lpsolve
+
+    rm $out/lib/liblpsolve*.a
+    rm $out/include/lpsolve/lp_solveDLL.h  # A Windows header
+
+    runHook postInstall
   '';
 
   meta = with lib; {
@@ -44,6 +49,4 @@ stdenv.mkDerivation rec {
     maintainers = with maintainers; [ smironov ];
     platforms   = platforms.unix;
   };
-
 }
-

pkgs/applications/science/math/lp_solve/isnan.patch

@@ -1,13 +0,0 @@
-diff -u a/lp_lib.h b/lp_lib.h
---- a/lp_lib.h	2016-05-04 19:45:15.753143720 +0900
-+++ b/lp_lib.h	2016-05-04 19:53:59.536920722 +0900
-@@ -59,9 +59,6 @@
- # if defined _WIN32 && !defined __GNUC__
- #  define isnan _isnan
- # endif
--#if defined NOISNAN
--# define isnan(x) FALSE
--#endif
- 
- #define SETMASK(variable, mask)     variable |= mask
- #define CLEARMASK(variable, mask)   variable &= ~(mask)

pkgs/applications/science/math/sage/default.nix

@@ -38,8 +38,8 @@ let
     ];
     language = "sagemath";
     # just one 16x16 logo is available
-    logo32 = "${sage-src}/doc/common/themes/sage/static/sageicon.png";
-    logo64 = "${sage-src}/doc/common/themes/sage/static/sageicon.png";
+    logo32 = "${sage-src}/src/doc/common/themes/sage/static/sageicon.png";
+    logo64 = "${sage-src}/src/doc/common/themes/sage/static/sageicon.png";
   };
 
   three = callPackage ./threejs-sage.nix { };

pkgs/applications/video/streamlink-twitch-gui/bin.nix

@@ -28,6 +28,7 @@
 let
   basename = "streamlink-twitch-gui";
   runtimeLibs = lib.makeLibraryPath [ libudev0-shim ];
+  runtimeBins = lib.makeBinPath [ streamlink ];
   arch =
     if stdenv.hostPlatform.system == "x86_64-linux"
     then
@@ -90,16 +91,23 @@ stdenv.mkDerivation rec {
   dontConfigure = true;
 
   installPhase = ''
+    runHook preInstall
     mkdir -p $out/{bin,opt/${basename},share}
 
     # Install all files, remove unnecessary ones
     cp -a . $out/opt/${basename}/
     rm -r $out/opt/${basename}/{{add,remove}-menuitem.sh,credits.html,icons/}
-
-    wrapProgram $out/opt/${basename}/${basename} --add-flags "--no-version-check" --prefix LD_LIBRARY_PATH : ${runtimeLibs}
-
     ln -s "$out/opt/${basename}/${basename}" $out/bin/
-    ln -s "${desktopItem}/share/applications" $out/share/
+    cp -r "${desktopItem}/share/applications" $out/share/
+    runHook postInstall
+  '';
+
+  preFixup = ''
+    gappsWrapperArgs+=(
+      --add-flags "--no-version-check" \
+      --prefix LD_LIBRARY_PATH : ${runtimeLibs} \
+      --prefix PATH : ${runtimeBins}
+    )
   '';
 
   desktopItem = makeDesktopItem {
@@ -115,7 +123,7 @@ stdenv.mkDerivation rec {
     description = "Twitch.tv browser for Streamlink";
     longDescription = "Browse Twitch.tv and watch streams in your videoplayer of choice";
     homepage = "https://streamlink.github.io/streamlink-twitch-gui/";
-    downloadPage = https://github.com/streamlink/streamlink-twitch-gui/releases;
+    downloadPage = "https://github.com/streamlink/streamlink-twitch-gui/releases";
     license = licenses.mit;
     maintainers = with maintainers; [ rileyinman ];
     platforms = [ "x86_64-linux" "i686-linux" ];

pkgs/applications/window-managers/sway/bg.nix

@@ -15,6 +15,7 @@ stdenv.mkDerivation rec {
     sha256 = "17508q9wsw6c1lsxlcbxj74z2naqhwi5c7lkbq24m4lk8qmy0576";
   };
 
+  depsBuildBuild = [ pkg-config ];
   nativeBuildInputs = [ meson ninja pkg-config scdoc wayland-scanner ];
   buildInputs = [ wayland wayland-protocols cairo gdk-pixbuf ];
 

pkgs/applications/window-managers/sway/idle.nix

@@ -5,20 +5,15 @@
 
 stdenv.mkDerivation rec {
   pname = "swayidle";
-  version = "1.6";
+  version = "1.7";
 
   src = fetchFromGitHub {
     owner = "swaywm";
     repo = "swayidle";
     rev = version;
-    sha256 = "1nd3v8r9549lykdwh4krldfl59lzaspmmai5k1icy7dvi6kkr18r";
+    sha256 = "0ziya8d5pvvxg16jhy4i04pvq11bdvj68gz5q654ar4dldil17nn";
   };
 
-  postPatch = ''
-    substituteInPlace meson.build \
-      --replace "version: '1.5'" "version: '${version}'"
-  '';
-
   nativeBuildInputs = [ meson ninja pkg-config scdoc wayland-scanner ];
   buildInputs = [ wayland wayland-protocols systemd ];
 

pkgs/build-support/replace-secret/replace-secret.nix

@@ -3,13 +3,14 @@
 stdenv.mkDerivation {
   name = "replace-secret";
   buildInputs = [ python3 ];
-  phases = [ "installPhase" "checkPhase" ];
+  dontUnpack = true;
   installPhase = ''
+    runHook preInstall
     install -D ${./replace-secret.py} $out/bin/replace-secret
     patchShebangs $out
+    runHook postInstall
   '';
-  doCheck = true;
-  checkPhase = ''
+  installCheckPhase = ''
     install -m 0600 ${./test/input_file} long_test
     $out/bin/replace-secret "replace this" ${./test/passwd} long_test
     $out/bin/replace-secret "and this" ${./test/rsa} long_test

pkgs/development/compilers/closure/default.nix

@@ -2,21 +2,21 @@
 
 stdenv.mkDerivation rec {
   pname = "closure-compiler";
-  version = "20200719";
+  version = "20210808";
 
   src = fetchurl {
-    url = "https://dl.google.com/closure-compiler/compiler-${version}.tar.gz";
-    sha256 = "18095i98mk5kc1vpaf6gvmvhiyl2x4zrcwd7ix5l98jydldiz7wx";
+    url = "https://repo1.maven.org/maven2/com/google/javascript/closure-compiler/v${version}/closure-compiler-v${version}.jar";
+    sha256 = "1cvibvm8l4mp64ml6lpsh3w62bgbr42pi3i7ga8ss0prhr0dsk3y";
   };
 
-  sourceRoot = ".";
+  dontUnpack = true;
 
   nativeBuildInputs = [ makeWrapper ];
   buildInputs = [ jre ];
 
   installPhase = ''
     mkdir -p $out/share/java $out/bin
-    cp closure-compiler-v${version}.jar $out/share/java
+    cp ${src} $out/share/java/closure-compiler-v${version}.jar
     makeWrapper ${jre}/bin/java $out/bin/closure-compiler \
       --add-flags "-jar $out/share/java/closure-compiler-v${version}.jar"
   '';

pkgs/development/compilers/nextpnr/default.nix

@@ -14,14 +14,14 @@ let
 in
 stdenv.mkDerivation rec {
   pname = "nextpnr";
-  version = "2021.08.06";
+  version = "2021.08.16";
 
   srcs = [
     (fetchFromGitHub {
       owner  = "YosysHQ";
       repo   = "nextpnr";
-      rev    = "dd6376433154e008045695f5420469670b0c3a88";
-      sha256 = "197k0a3cjnwinr4nnx7gqvpfi0wdhnmsmvcx12166jg7m1va5kw7";
+      rev    = "b37d133c43c45862bd5c550b5d7fffaa8c49b968";
+      sha256 = "0qc9d8cay2j5ggn0mgjq484vv7a14na16s9dmp7bqz7r9cn4b98n";
       name   = "nextpnr";
     })
     (fetchFromGitHub {

pkgs/development/compilers/openjdk/darwin/default.nix

@@ -65,6 +65,12 @@ let
       EOF
     '';
 
+    # fixupPhase is moving the man to share/man which breaks it because it's a
+    # relative symlink.
+    postFixup = ''
+      ln -nsf ../zulu-${lib.versions.major version}.jdk/Contents/Home/man $out/share/man
+    '';
+
     passthru = {
       home = jdk;
     };

pkgs/development/compilers/yosys/default.nix

@@ -34,13 +34,13 @@
 
 stdenv.mkDerivation rec {
   pname   = "yosys";
-  version = "0.9+4272";
+  version = "0.9+4276";
 
   src = fetchFromGitHub {
     owner  = "YosysHQ";
     repo   = "yosys";
-    rev    = "83c0f82dc842fc859dfb4b19e766b23f965cfbb3";
-    sha256 = "08lyx2fp34fvnv0lj77r5v3s9a0zr32ywpcz0v8i6wwscjfbp8ba";
+    rev    = "75a4cdfc8afc10fed80e43fb1ba31c7edaf6e361";
+    sha256 = "13xb7ny6i0kr6z6xkj9wmmcj551si7w05r3cghq8h8wkikyh6c8p";
   };
 
   enableParallelBuilding = true;

pkgs/development/compilers/yosys/plugins/bluespec.nix

@@ -4,13 +4,13 @@
 
 stdenv.mkDerivation {
   pname = "yosys-bluespec";
-  version = "2021.01.17";
+  version = "2021.08.19";
 
   src = fetchFromGitHub {
     owner  = "thoughtpolice";
     repo   = "yosys-bluespec";
-    rev    = "3cfa22c2810b840f406610efe3d7657477c1b0ed";
-    sha256 = "1r48128yisw5lpziaj3hq88acghwi94pvm4735xajx8dl79jkcng";
+    rev    = "bcea1635c97747acd3bcb5b8f1968b3f57ae62bc";
+    sha256 = "0ipx9yjngs3haksdb440wlydviszwqnxgzynpp7yic2x3ai7i8m1";
   };
 
   buildInputs = [ yosys readline zlib bluespec ];

pkgs/development/libraries/amdvlk/default.nix

@@ -21,13 +21,13 @@ let
 
 in stdenv.mkDerivation rec {
   pname = "amdvlk";
-  version = "2021.Q3.2";
+  version = "2021.Q3.4";
 
   src = fetchRepoProject {
     name = "${pname}-src";
     manifest = "https://github.com/GPUOpen-Drivers/AMDVLK.git";
     rev = "refs/tags/v-${version}";
-    sha256 = "q860VD6hUs1U9mlkj/vqkLT/4zqGqQl4JI/flyDwhC8=";
+    sha256 = "Rmx5vicxKXstI8TdxeFVjEFe71XJOyzp5L6VyDNuXmM=";
   };
 
   buildInputs = [

pkgs/development/libraries/ftxui/default.nix

@@ -0,0 +1,33 @@
+{ lib
+, stdenv
+, fetchFromGitHub
+, cmake
+, doxygen
+, graphviz
+}:
+
+stdenv.mkDerivation rec {
+  pname = "ftxui";
+  version = "unstable-2021-08-13";
+
+  src = fetchFromGitHub {
+    owner = "ArthurSonzogni";
+    repo = pname;
+    rev = "69b0c9e53e523ac43a303964fc9c5bc0da7d5d61";
+    sha256 = "0cbljksgy1ckw34h0mq70s8sma0p16sznn4z9r4hwv76y530m0ww";
+  };
+
+  nativeBuildInputs = [
+    cmake
+    doxygen
+    graphviz
+  ];
+
+  meta = with lib; {
+    homepage = "https://github.com/ArthurSonzogni/FTXUI";
+    description = "Functional Terminal User Interface for C++";
+    license = licenses.mit;
+    maintainers = [ maintainers.ivar ];
+    platforms = platforms.unix;
+  };
+}

pkgs/development/libraries/libemf2svg/default.nix

@@ -0,0 +1,31 @@
+{ lib
+, stdenv
+, fetchFromGitHub
+, cmake
+, fontconfig
+, freetype
+, libpng
+}:
+
+stdenv.mkDerivation rec {
+  pname = "libemf2svg";
+  version = "1.1.0";
+
+  src = fetchFromGitHub {
+    owner = "kakwa";
+    repo = pname;
+    rev = version;
+    sha256 = "04g6dp5xadszqjyjl162x26mfhhwinia65hbkl3mv70bs4an9898";
+  };
+
+  nativeBuildInputs = [ cmake ];
+  buildInputs = [ fontconfig freetype libpng ];
+
+  meta = with lib; {
+    description = "Microsoft EMF to SVG conversion library";
+    homepage = "https://github.com/kakwa/libemf2svg";
+    maintainers = with maintainers; [ erdnaxe ];
+    license = licenses.gpl2Only;
+    platforms = [ "x86_64-linux" ];
+  };
+}

pkgs/development/libraries/libvisio2svg/default.nix

@@ -0,0 +1,34 @@
+{ lib
+, stdenv
+, fetchFromGitHub
+, cmake
+, freetype
+, libemf2svg
+, librevenge
+, libvisio
+, libwmf
+, libxml2
+}:
+
+stdenv.mkDerivation rec {
+  pname = "libvisio2svg";
+  version = "0.5.5";
+
+  src = fetchFromGitHub {
+    owner = "kakwa";
+    repo = pname;
+    rev = version;
+    sha256 = "14m37mmib1596c76j9w178jqhwxyih2sy5w5q9xglh8cmlfn1hfx";
+  };
+
+  nativeBuildInputs = [ cmake ];
+  buildInputs = [ libxml2 freetype librevenge libvisio libwmf libemf2svg ];
+
+  meta = with lib; {
+    description = "Library and tools to convert Microsoft Visio documents (VSS and VSD) to SVG";
+    homepage = "https://github.com/kakwa/libvisio2svg";
+    maintainers = with maintainers; [ erdnaxe ];
+    license = licenses.gpl2Only;
+    platforms = [ "x86_64-linux" ];
+  };
+}

pkgs/development/libraries/qpdf/default.nix

@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   pname = "qpdf";
-  version = "10.3.1";
+  version = "10.3.2";
 
   src = fetchFromGitHub {
     owner = "qpdf";
     repo = "qpdf";
     rev = "release-qpdf-${version}";
-    sha256 = "sha256-iZUJjr9e+d90XA8YEFFwyRR0HjgPgBi6V5gIpVQMcV8=";
+    sha256 = "sha256-fhn6hE/MLYiaOxZYfaVcj17V+h8Yvn18QTewS0rPIXE=";
   };
 
   nativeBuildInputs = [ perl ];

pkgs/development/libraries/qt-5/5.15/default.nix

@@ -200,6 +200,7 @@ let
       qtquickcontrols2 = callPackage ../modules/qtquickcontrols2.nix {};
       qtscript = callPackage ../modules/qtscript.nix {};
       qtsensors = callPackage ../modules/qtsensors.nix {};
+      qtserialbus = callPackage ../modules/qtserialbus.nix {};
       qtserialport = callPackage ../modules/qtserialport.nix {};
       qtspeech = callPackage ../modules/qtspeech.nix {};
       qtsvg = callPackage ../modules/qtsvg.nix {};

pkgs/development/libraries/science/math/openspecfun/default.nix

@@ -2,12 +2,12 @@
 
 stdenv.mkDerivation rec {
   pname = "openspecfun";
-  version = "0.5.3";
+  version = "0.5.5";
   src = fetchFromGitHub {
     owner = "JuliaLang";
     repo = "openspecfun";
     rev = "v${version}";
-    sha256 = "0pfw6l3ch7isz403llx7inxlvavqh01jh1hb9dpidi86sjjx9kfh";
+    sha256 = "sha256-fX2wc8LHUcF5nN/hiA60ZZ7emRTs0SznOm/0q6lD+Ko=";
   };
 
   makeFlags = [ "prefix=$(out)" ];

pkgs/development/libraries/sentry-native/default.nix

@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   pname = "sentry-native";
-  version = "0.4.11";
+  version = "0.4.12";
 
   src = fetchFromGitHub {
     owner = "getsentry";
     repo = "sentry-native";
     rev = version;
-    sha256 = "sha256-kasZ5OAtl32Oxed4BkxvHXEFqEvBaBwyslHO7Ga5TRY=";
+    sha256 = "sha256-ut864o4LHmuHYJszFz7LFoIiSvf6a0S42xmV51CVBQ0=";
   };
 
   nativeBuildInputs = [ cmake ];

pkgs/development/node-packages/node-packages.json

@@ -133,7 +133,7 @@
 , "indium"
 , "insect"
 , "ionic"
-, {"iosevka": "https://github.com/be5invis/Iosevka/archive/v7.2.4.tar.gz"}
+, {"iosevka": "https://github.com/be5invis/Iosevka/archive/v10.0.0.tar.gz"}
 , "jake"
 , "javascript-typescript-langserver"
 , "joplin"

pkgs/development/php-packages/swoole/default.nix

@@ -1,4 +1,4 @@
-{ lib, buildPecl, php, valgrind, pcre2 }:
+{ lib, stdenv, buildPecl, php, valgrind, pcre2 }:
 
 buildPecl {
   pname = "swoole";
@@ -6,7 +6,7 @@ buildPecl {
   version = "4.6.7";
   sha256 = "107wp403z8skkqrcm240vyyy6wqx5a4v2bqhlshlknyi14r2v165";
 
-  buildInputs = [ valgrind pcre2 ];
+  buildInputs = [ pcre2 ] ++ lib.optionals (!stdenv.isDarwin) [ valgrind ];
   internalDeps = lib.optionals (lib.versionOlder php.version "7.4") [ php.extensions.hash ];
 
   doCheck = true;

pkgs/development/python-modules/bond-api/default.nix

@@ -9,13 +9,13 @@
 
 buildPythonPackage rec {
   pname = "bond-api";
-  version = "0.1.12";
+  version = "0.1.13";
 
   src = fetchFromGitHub {
     owner = "prystupa";
     repo = "bond-api";
     rev = "v${version}";
-    sha256 = "0zqaqqadr4x4vmq28nfk5x67gfwqqfy19z0cgrpxlbbvxamccym0";
+    sha256 = "0v3bwbpn98fjm8gza2k7fb7w5ps3982kfvbck5x0fh2xq2825b80";
   };
 
   propagatedBuildInputs = [

pkgs/development/python-modules/chalice/default.nix

@@ -1,41 +1,42 @@
 { lib
-, buildPythonPackage
-, fetchPypi
-, pythonOlder
 , attrs
 , botocore
+, buildPythonPackage
 , click
-, enum-compat
+, fetchFromGitHub
 , hypothesis
 , inquirer
 , jmespath
 , mock
 , mypy-extensions
 , pip
-, pytest
+, pytestCheckHook
+, pythonOlder
 , pyyaml
+, requests
 , setuptools
 , six
-, typing ? null
+, typing
 , watchdog
+, websocket-client
 , wheel
 }:
 
 buildPythonPackage rec {
   pname = "chalice";
-  version = "1.23.0";
+  version = "1.24.2";
 
-  src = fetchPypi {
-    inherit pname version;
-    sha256 = "8e3b26f8ec15197d8c04cd1edb0d692a490cb5ec179560183a403de63f21c1d7";
+  src = fetchFromGitHub {
+    owner = "aws";
+    repo = pname;
+    rev = version;
+    sha256 = "0xpzc3rizdkjxclgxngswz0a22kdv1pw235gsw517ma7i06d0lw6";
   };
 
-  checkInputs = [ watchdog pytest hypothesis mock ];
   propagatedBuildInputs = [
     attrs
     botocore
     click
-    enum-compat
     inquirer
     jmespath
     mypy-extensions
@@ -44,12 +45,18 @@ buildPythonPackage rec {
     setuptools
     six
     wheel
-  ] ++ lib.optionals (pythonOlder "3.5") [
+    watchdog
+  ] ++ lib.optionals (pythonOlder "3.7") [
     typing
   ];
 
-  # conftest.py not included with pypi release
-  doCheck = false;
+  checkInputs = [
+    hypothesis
+    mock
+    pytestCheckHook
+    requests
+    websocket-client
+  ];
 
   postPatch = ''
     sed -i setup.py -e "/pip>=/c\'pip',"
@@ -57,14 +64,35 @@ buildPythonPackage rec {
       --replace 'typing==3.6.4' 'typing'
   '';
 
-  checkPhase = ''
-    pytest tests
-  '';
+  disabledTestPaths = [
+    # Don't check the templates and the sample app
+    "chalice/templates"
+    "docs/source/samples/todo-app/code/tests/test_db.py"
+    # Requires credentials
+    "tests/aws/test_features.py"
+    # Requires network access
+    "tests/aws/test_websockets.py"
+    "tests/integration/test_package.py"
+  ];
+
+  disabledTests = [
+    # Requires network access
+    "test_update_domain_name_failed"
+    "test_can_reload_server"
+    # Content for the tests is missing
+    "test_can_import_env_vars"
+    "test_stack_trace_printed_on_error"
+    # Don't build
+    "test_can_generate_pipeline_for_all"
+    "test_build_wheel"
+  ];
+
+  pythonImportsCheck = [ "chalice" ];
 
   meta = with lib; {
     description = "Python Serverless Microframework for AWS";
     homepage = "https://github.com/aws/chalice";
     license = licenses.asl20;
-    maintainers = [ maintainers.costrouc ];
+    maintainers = with maintainers; [ costrouc ];
   };
 }

pkgs/development/python-modules/defcon/default.nix

@@ -5,13 +5,13 @@
 
 buildPythonPackage rec {
   pname = "defcon";
-  version = "0.8.1";
+  version = "0.9.0";
 
   disabled = pythonOlder "3.6";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1sj9yhwkyvzchglpy07pkx5362mwlap581ibv150b5l9s5mxn2j1";
+    sha256 = "140f51da51e9630a9fa11dfd34376c4e29785fdb0bddc2e371df5b36bec17b76";
     extension = "zip";
   };
 

pkgs/development/python-modules/dsmr-parser/default.nix

@@ -10,13 +10,13 @@
 
 buildPythonPackage rec {
   pname = "dsmr-parser";
-  version = "0.29";
+  version = "0.30";
 
   src = fetchFromGitHub {
     owner = "ndokter";
     repo = "dsmr_parser";
     rev = "v${version}";
-    sha256 = "11d6cwmabzc8p6jkqwj72nrj7p6cxbvr0x3jdrxyx6zki8chyw4p";
+    sha256 = "sha256-3RXku0L/XQFarECxY1LSs2TwSOlJAOiS6yEepHCGL5U=";
   };
 
   propagatedBuildInputs = [

pkgs/development/python-modules/mautrix/default.nix

@@ -4,11 +4,11 @@
 
 buildPythonPackage rec {
   pname = "mautrix";
-  version = "0.10.3";
+  version = "0.10.4";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "53d02ba86d53613833ca54ddad097ae048b2aa4f6e7a435a4de979d89abb8be0";
+    sha256 = "ffbc4e29eb56089539b408f8e4c12a5d5a5d11d7fe7d40f8c6279784c618b869";
   };
 
   propagatedBuildInputs = [

pkgs/development/python-modules/onlykey-solo-python/default.nix

@@ -0,0 +1,35 @@
+{ buildPythonPackage
+, click
+, ecdsa
+, fetchPypi
+, fido2
+, intelhex
+, lib
+, pyserial
+, pyusb
+, requests
+}:
+
+buildPythonPackage rec {
+  pname = "onlykey-solo-python";
+  version = "0.0.28";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "sha256-Mbi5So2OgeXjg4Fzg7v2gAJuh1Y7ZCYu8Lrha/7PQfY=";
+  };
+
+  propagatedBuildInputs = [ click ecdsa fido2 intelhex pyserial pyusb requests ];
+
+  # no tests
+  doCheck = false;
+  pythonImportsCheck = [ "solo" ];
+
+  meta = with lib; {
+    homepage = "https://github.com/trustcrypto/onlykey-solo-python";
+    description = "Python library for OnlyKey with Solo FIDO2";
+    maintainers = with maintainers; [ kalbasit ];
+    license = licenses.asl20;
+  };
+}
+

pkgs/development/python-modules/pdf2image/default.nix

@@ -2,13 +2,13 @@
 
 buildPythonPackage rec {
   pname = "pdf2image";
-  version = "1.15.1";
+  version = "1.16.0";
 
   propagatedBuildInputs = [ pillow poppler_utils ];
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "aa6013c1b5b25ceb90caa34834f1ed343e969cfa532100e1472cfe0e96a639b5";
+    sha256 = "d58ed94d978a70c73c2bb7fdf8acbaf2a7089c29ff8141be5f45433c0c4293bb";
   };
 
   meta = with lib; {

pkgs/development/python-modules/platformdirs/default.nix

@@ -0,0 +1,44 @@
+{ lib
+, appdirs
+, buildPythonPackage
+, fetchFromGitHub
+, platformdirs
+, pytest-mock
+, pytestCheckHook
+, pythonOlder
+, setuptools-scm
+}:
+
+buildPythonPackage rec {
+  pname = "platformdirs";
+  version = "2.2.0";
+  disabled = pythonOlder "3.6";
+
+  src = fetchFromGitHub {
+    owner = pname;
+    repo = pname;
+    rev = version;
+    sha256 = "15f08czqfmxy1y947rlrsjs20jgsy2vc1wqhv4b08b3ijxj0jpqh";
+  };
+
+  SETUPTOOLS_SCM_PRETEND_VERSION = version;
+
+  nativeBuildInputs = [
+    setuptools-scm
+  ];
+
+  checkInputs = [
+    appdirs
+    pytest-mock
+    pytestCheckHook
+  ];
+
+ pythonImportsCheck = [ "platformdirs" ];
+
+  meta = with lib; {
+    description = "Python module for determining appropriate platform-specific directories";
+    homepage = "https://platformdirs.readthedocs.io/";
+    license = licenses.mit;
+    maintainers = with maintainers; [ fab ];
+  };
+}

pkgs/development/python-modules/ptpython/default.nix

@@ -10,12 +10,12 @@
 
 buildPythonPackage rec {
   pname = "ptpython";
-  version = "3.0.17";
+  version = "3.0.19";
   disabled = !isPy3k;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "911d25cca31a8e4f9b2ecd16dcdad793b8859e94fca1275f3485d8cdf20b13de";
+    sha256 = "b3d41ce7c2ce0e7e55051347eae400fc56b9b42b1c4a9db25b19ccf6195bfc12";
   };
 
   propagatedBuildInputs = [

pkgs/development/python-modules/py3status/default.nix

@@ -24,11 +24,11 @@
 
 buildPythonPackage rec {
   pname = "py3status";
-  version = "3.37";
+  version = "3.38";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "e05fe64df57de0f86e9b1aca907cd6f080d85909085e594868af488ce3557809";
+    sha256 = "5660163a91590f320685263a738ab910c7a86346d9c85a68639a19ab83433ce6";
   };
 
   doCheck = false;

pkgs/development/python-modules/pycm/default.nix

@@ -1,4 +1,4 @@
-{ lib, buildPythonPackage, fetchFromGitHub, isPy3k, matplotlib, numpy, pytest, seaborn }:
+{ lib, buildPythonPackage, fetchFromGitHub, isPy3k, matplotlib, numpy, pytestCheckHook, seaborn }:
 
 buildPythonPackage rec {
   pname = "pycm";
@@ -16,16 +16,14 @@ buildPythonPackage rec {
   # remove a trivial dependency on the author's `art` Python ASCII art library
   postPatch = ''
     rm pycm/__main__.py
+    rm Otherfiles/notebook_check.py  # also depends on python3Packages.notebook
     substituteInPlace setup.py --replace '=get_requires()' '=[]'
   '';
 
-  checkInputs = [ pytest ];
+  checkInputs = [ pytestCheckHook ];
+  disabledTests = [ "pycm.pycm_compare.Compare" ];  # output formatting error
   propagatedBuildInputs = [ matplotlib numpy seaborn ];
 
-  checkPhase = ''
-    pytest Test/
-  '';
-
   meta = with lib; {
     description = "Multiclass confusion matrix library";
     homepage = "https://pycm.ir";

pkgs/development/python-modules/pynamodb/default.nix

@@ -11,11 +11,11 @@
 
 buildPythonPackage rec {
   pname = "pynamodb";
-  version = "5.0.3";
+  version = "5.1.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "01741df673abb518d5cf9f00223a227f5d0ab9e0a6b19e444ceb38d497019f31";
+    sha256 = "7f351d70b9f4da95ea2d7e50299640e4c46c83b7b24bea5daf110acd2e5aef2b";
   };
 
   propagatedBuildInputs = [ python-dateutil botocore ];

pkgs/development/python-modules/pyodbc/default.nix

@@ -2,12 +2,12 @@
 
 buildPythonPackage rec {
   pname = "pyodbc";
-  version = "4.0.30";
+  version = "4.0.31";
   disabled = isPyPy;  # use pypypdbc instead
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0skjpraar6hcwsy82612bpj8nw016ncyvvq88j5syrikxgp5saw5";
+    sha256 = "89256e79d23415887cacf0a821f9f94baa5d833080521d456687d5e88c40c226";
   };
 
   buildInputs = [ unixODBC ];

pkgs/development/python-modules/pysaml2/default.nix

@@ -10,7 +10,7 @@
 
 buildPythonPackage rec {
   pname = "pysaml2";
-  version = "6.5.2";
+  version = "7.0.1";
 
   disabled = !isPy3k;
 
@@ -19,7 +19,7 @@ buildPythonPackage rec {
     owner = "IdentityPython";
     repo = pname;
     rev = "v${version}";
-    sha256 = "1p0i88v2ng9fzs0fzjam1dc1idnihqc1wgagvnavqjrih721qcpi";
+    sha256 = "0ickqask6bjipgi3pvxg92pjr6dk2rr3q9garap39mdrp2gsfhln";
   };
 
   patches = [

pkgs/development/python-modules/pytest-httpx/default.nix

@@ -9,13 +9,13 @@
 
 buildPythonPackage rec {
   pname = "pytest-httpx";
-  version = "0.12.0";
+  version = "0.12.1";
 
   src = fetchFromGitHub {
     owner = "Colin-b";
     repo = "pytest_httpx";
     rev = "v${version}";
-    sha256 = "sha256-Awhsm8jmoCZTBnfrrauLxAEKtpxTzjPMXmx7HR0f/g4=";
+    sha256 = "sha256-eyR0h0fW5a+L6QslTnM0TPvQCto06aMcKCE+b8LqHcQ=";
   };
 
   buildInputs = [ pytest ];

pkgs/development/python-modules/pywemo/default.nix

@@ -13,7 +13,7 @@
 
 buildPythonPackage rec {
   pname = "pywemo";
-  version = "0.6.6";
+  version = "0.6.7";
   format = "pyproject";
   disabled = pythonOlder "3.7";
 
@@ -21,7 +21,7 @@ buildPythonPackage rec {
     owner = pname;
     repo = pname;
     rev = version;
-    sha256 = "04h4av65x0a2iv3a4rpsq19m9pi7wk8j447rr5z7jwap870gs8nd";
+    sha256 = "sha256-g3/xMCCCsn2EY1DsRuZAcfUIsdkP3mEkYlI+KjYKXOk=";
   };
 
   nativeBuildInputs = [

pkgs/development/python-modules/qrcode/default.nix

@@ -10,11 +10,11 @@
 
 buildPythonPackage rec {
   pname = "qrcode";
-  version = "6.1";
+  version = "7.3";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "505253854f607f2abf4d16092c61d4e9d511a3b4392e60bff957a68592b04369";
+    sha256 = "d72861b65e26b611609f0547f0febe58aed8ae229d6bf4e675834f40742915b3";
   };
 
   propagatedBuildInputs = [ six pillow pymaging_png setuptools ];

pkgs/development/python-modules/quantities/default.nix

@@ -7,11 +7,11 @@
 
 buildPythonPackage rec {
   pname = "quantities";
-  version = "0.12.4";
+  version = "0.12.5";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "12qx6cgib3wxmm2cvann4zw4jnhhn24ms61ifq9f3jbh31nn6gd3";
+    sha256 = "67546963cb2a519b1a4aa43d132ef754360268e5d551b43dd1716903d99812f0";
   };
 
   propagatedBuildInputs = [ numpy ];

pkgs/development/python-modules/requests-cache/default.nix

@@ -18,7 +18,7 @@
 
 buildPythonPackage rec {
   pname = "requests-cache";
-  version = "0.7.3";
+  version = "0.7.4";
   disabled = pythonOlder "3.6";
   format = "pyproject";
 
@@ -26,7 +26,7 @@ buildPythonPackage rec {
     owner = "reclosedev";
     repo = "requests-cache";
     rev = "v${version}";
-    sha256 = "sha256-QGh/ThI5bKE65luVHDSsr6RQq5RReugdZrVvR1R0pUU=";
+    sha256 = "sha256-FndKFdmEsp3TF2W4b7nhARi9ZOutlE43vvzYxiwbL08=";
   };
 
   nativeBuildInputs = [

pkgs/development/python-modules/sacn/default.nix

@@ -6,12 +6,12 @@
 
 buildPythonPackage rec {
   pname = "sacn";
-  version = "1.7.0";
+  version = "1.8.1";
   disabled = isPy27;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "136gw09av7r2y02q7aam4chhivpbwkdskwwavrl5v0zn34y0axwp";
+    sha256 = "cdc9af732f4ca5badbf732499775575c4f815c73f857720c0a61a3fc80257f7a";
   };
 
   # no tests

pkgs/development/python-modules/somajo/default.nix

@@ -2,14 +2,14 @@
 
 buildPythonPackage rec {
   pname = "SoMaJo";
-  version = "2.1.3";
+  version = "2.1.4";
   disabled = !isPy3k;
 
   src = fetchFromGitHub {
     owner = "tsproisl";
     repo = pname;
     rev = "v${version}";
-    sha256 = "07jkkg5ph5m47xf8w5asy5930qcpy6p11j0admll2y6yjynd2b47";
+    sha256 = "0clcndij4nd5ig7padvb9dj5hfxg6nymn9sf42bjr9ipjihcsbdq";
   };
 
   propagatedBuildInputs = [ regex ];

pkgs/development/python-modules/stevedore/default.nix

@@ -10,12 +10,12 @@
 
 buildPythonPackage rec {
   pname = "stevedore";
-  version = "3.3.0";
+  version = "3.4.0";
   disabled = pythonOlder "3.6";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "3a5bbd0652bf552748871eaa73a4a8dc2899786bc497a2aa1fcb4dcdb0debeee";
+    sha256 = "18aaxj4nrki0bjgzmqxqy20m7763q1xmwishy6biicapgzdqxdar";
   };
 
   propagatedBuildInputs = [

pkgs/development/python-modules/websocket-client/default.nix

@@ -8,12 +8,12 @@
 
 buildPythonPackage rec {
   pname = "websocket-client";
-  version = "1.2.0";
+  version = "1.2.1";
   disabled = pythonOlder "3.6";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "sha256-dmW6bGRZibKLYWcIdKt1PmkpF56fyQVlrOasCQ9ZxVk=";
+    sha256 = "8dfb715d8a992f5712fff8c843adae94e22b22a99b2c5e6b0ec4a1a981cc4e0d";
   };
 
   propagatedBuildInputs = [

pkgs/development/python-modules/zeep/default.nix

@@ -1,7 +1,6 @@
 { lib
 , aiohttp
 , aioresponses
-, appdirs
 , attrs
 , buildPythonPackage
 , cached-property
@@ -12,6 +11,7 @@
 , isodate
 , lxml
 , mock
+, platformdirs
 , pretend
 , pytest-asyncio
 , pytest-httpx
@@ -27,28 +27,28 @@
 
 buildPythonPackage rec {
   pname = "zeep";
-  version = "4.0.0";
+  version = "4.1.0";
   disabled = pythonOlder "3.6";
 
   src = fetchFromGitHub {
     owner = "mvantellingen";
     repo = "python-zeep";
     rev = version;
-    sha256 = "1rwmwk47fxs8dxwv5dr6gbnbiyilznifb47fhbxgzj231w0y82cm";
+    sha256 = "sha256-fJLr2LJpbNQTl183R56G7sJILfm04R39qpJxLogQLoo=";
   };
 
   propagatedBuildInputs = [
-    appdirs
     attrs
     cached-property
     defusedxml
     httpx
     isodate
     lxml
+    platformdirs
     pytz
     requests
-    requests-toolbelt
     requests-file
+    requests-toolbelt
     xmlsec
   ];
 
@@ -62,7 +62,6 @@ buildPythonPackage rec {
     pytest-httpx
     pytestCheckHook
     requests-mock
-    xmlsec
   ];
 
   preCheck = ''

pkgs/development/tools/analysis/randoop/default.nix

@@ -1,12 +1,12 @@
 { lib, stdenv, fetchurl, unzip }:
 
 stdenv.mkDerivation rec {
-  version = "4.2.5";
+  version = "4.2.6";
   pname = "randoop";
 
   src = fetchurl {
     url = "https://github.com/randoop/randoop/releases/download/v${version}/${pname}-${version}.zip";
-    sha256 = "0v3vla3k6csfb8w0j9njrhcjj4n7yh172n9wv6z397f1sa0fs202";
+    sha256 = "sha256-69cKAyMwORG4A91OARmY4uQKgBZIx9N/zc7TZ086CK0=";
   };
 
   nativeBuildInputs = [ unzip ];

pkgs/development/tools/database/sqlitebrowser/default.nix

@@ -3,13 +3,13 @@
 
 mkDerivation rec {
   pname = "sqlitebrowser";
-  version = "3.12.1";
+  version = "3.12.2";
 
   src = fetchFromGitHub {
     owner = pname;
     repo = pname;
     rev = "v${version}";
-    sha256 = "0ray6cscx2qil1dfi7hmpijmq3kba49wn430ih1q4fkz9psjvrz1";
+    sha256 = "sha256-33iVic0kxemWld+SiHOWGlKFSi5fpk1RtLUiNDr7WNI=";
   };
 
   # We should be using qscintilla from nixpkgs instead of the vendored version,

pkgs/development/tools/electron/default.nix

@@ -115,13 +115,13 @@ rec {
     headers = "0b66a7nbi1mybqy0j8x6hnp9k0jzvr6lpp4zsazhbfpk47px116y";
   };
 
-  electron_13 = mkElectron "13.1.9" {
-    x86_64-linux = "60c7c74a5dd00ebba6d6b5081a4b83d94ac97ec5e53488b8b8a1b9aabe17fefc";
-    x86_64-darwin = "b897bdc42d9d1d0a49fc513c769603bff6e111389e2a626eb628257bc705f634";
-    i686-linux = "081f08ce7ff0e1e8fb226a322b855f951d120aa522773f17dd8e5a87969b001f";
-    armv7l-linux = "c6b6b538d4764104372539c511921ddecbf522ded1fea856cbc3d9a303a86206";
-    aarch64-linux = "9166dd3e703aa8c9f75dfee91fb250b9a08a32d8181991c1143a1da5aa1a9f20";
-    aarch64-darwin = "a1600c0321a0906761fdf88ab9f30d1c53b53803ca33bcae20a6ef7a6761cac1";
-    headers = "1k9x9hgwl23sd5zsdrdlcjp4ap40g282a1dxs1jyxrwq1dzgmsl3";
+  electron_13 = mkElectron "13.2.0" {
+    x86_64-linux = "def2e796fd0726f097d2c6997827f60de1940944dabcad33257bee9b4f8734da";
+    x86_64-darwin = "8d9970c0153e0a79aae5aed053da8652d05fc67c8f29cd17416a860bf7f82c1d";
+    i686-linux = "507d57e01b16549fe627bc55d8b94bf0f7676c7368438e749c6048869216d290";
+    armv7l-linux = "9f46b2e18729ff50d290babbef3bf57711ed96eceffdd101b109572790f914f2";
+    aarch64-linux = "386e0937ef78dce21e48589d6b76748c316ef6d4f8e8157a8b2ca08780ffbe2f";
+    aarch64-darwin = "232fa40a9ce498a17aa0be1e72c81173c1f614fd5d48cc34c3f387a3c9921e08";
+    headers = "00fwlqpiy2872d2yx4nhcg5a3n7z7cb0z0a82xbrlp6g0clh5v0w";
   };
 }

pkgs/development/tools/fprettify/default.nix

@@ -0,0 +1,28 @@
+{ lib, python3Packages, fetchFromGitHub }:
+
+python3Packages.buildPythonApplication rec {
+  pname = "fprettify";
+  version = "0.3.7";
+
+  src = fetchFromGitHub {
+    owner = "pseewald";
+    repo = pname;
+    rev = "v${version}";
+    sha256 = "17v52rylmsy3m3j5fcb972flazykz2rvczqfh8mxvikvd6454zyj";
+  };
+
+  preConfigure = ''
+    patchShebangs fprettify.py
+  '';
+
+  propagatedBuildInputs = with python3Packages; [
+    configargparse
+  ];
+
+  meta = with lib; {
+    description = "An auto-formatter for modern Fortran code that imposes strict whitespace formatting, written in Python.";
+    homepage = "https://pypi.org/project/fprettify/";
+    license = with licenses; [ gpl3Only ];
+    maintainers = with maintainers; [ fabiangd ];
+  };
+}

pkgs/development/tools/hcloud/default.nix

@@ -2,18 +2,18 @@
 
 buildGoModule rec {
   pname = "hcloud";
-  version = "1.26.1";
+  version = "1.27.0";
 
   src = fetchFromGitHub {
     owner = "hetznercloud";
     repo = "cli";
     rev = "v${version}";
-    sha256 = "sha256-fKekn930nOGYUhkQus9p4sKcsuUks+KfO4+X5C/3nWg=";
+    sha256 = "sha256-bvPMSys2EY8cMNQ3rG4WlXaI9k2JsEWQkMZnDgcNFhY=";
   };
 
   nativeBuildInputs = [ installShellFiles ];
 
-  vendorSha256 = "sha256-yPRtqJTmYDqzwHyBmVV4HxOmMe7FuSZ/lsQj8PInhFg=";
+  vendorSha256 = "sha256-/bqlDcv4lQ49NM849MTlna36ENfzUfcHtwuo75I77VQ=";
 
   doCheck = false;
 

pkgs/development/tools/poetry2nix/poetry2nix/default.nix

@@ -5,7 +5,7 @@
 }:
 let
   # Poetry2nix version
-  version = "1.17.1";
+  version = "1.19.0";
 
   inherit (poetryLib) isCompatible readTOML moduleName;
 

pkgs/development/tools/poetry2nix/poetry2nix/fetch_from_legacy.py

@@ -5,12 +5,12 @@
 # https://discuss.python.org/t/pip-download-just-the-source-packages-no-building-no-metadata-etc/4651/12
 
 import sys
-from urllib.parse import urlparse
+from urllib.parse import urlparse, urlunparse
 from html.parser import HTMLParser
 import urllib.request
 import shutil
 import ssl
-import os
+from os.path import normpath
 
 
 # Parse the legacy index page to extract the href and package names
@@ -44,9 +44,13 @@ package_filename = sys.argv[3]
 
 print("Reading index %s" % index_url)
 
+context = ssl.create_default_context()
+context.check_hostname = False
+context.verify_mode = ssl.CERT_NONE
+
 response = urllib.request.urlopen(
     index_url,
-    context=ssl.CERT_NONE)
+    context=context)
 index = response.read()
 
 parser = Pep503()
@@ -62,11 +66,24 @@ if urlparse(parser.sources[package_filename]).netloc == '':
     package_url = index_url + "/" + parser.sources[package_filename]
 else:
     package_url = parser.sources[package_filename]
-print("Downloading %s" % package_url)
+
+# Handle urls containing "../"
+parsed_url = urlparse(package_url)
+real_package_url = urlunparse(
+    (
+        parsed_url.scheme,
+        parsed_url.netloc,
+        normpath(parsed_url.path),
+        parsed_url.params,
+        parsed_url.query,
+        parsed_url.fragment,
+    )
+)
+print("Downloading %s" % real_package_url)
 
 response = urllib.request.urlopen(
-    package_url,
-    context=ssl.CERT_NONE)
+    real_package_url,
+    context=context)
 
 with response as r:
     shutil.copyfileobj(r, package_file)

pkgs/development/tools/poetry2nix/poetry2nix/hooks/pip-build-hook.sh

@@ -15,7 +15,7 @@ pipBuildPhase() {
 
     mkdir -p dist
     echo "Creating a wheel..."
-    @pythonInterpreter@ -m pip wheel --no-index --no-deps --no-clean --no-build-isolation --wheel-dir dist .
+    @pythonInterpreter@ -m pip wheel --verbose --no-index --no-deps --no-clean --no-build-isolation --wheel-dir dist .
     echo "Finished creating a wheel..."
 
     runHook postBuild

pkgs/development/tools/poetry2nix/poetry2nix/mk-poetry-dep.nix

@@ -47,7 +47,8 @@ pythonPackages.callPackage
       isSource = source != null;
       isGit = isSource && source.type == "git";
       isUrl = isSource && source.type == "url";
-      isLocal = isSource && source.type == "directory";
+      isDirectory = isSource && source.type == "directory";
+      isFile = isSource && source.type == "file";
       isLegacy = isSource && source.type == "legacy";
       localDepPath = toPath source.url;
 
@@ -71,7 +72,10 @@ pythonPackages.callPackage
           sourceDist = builtins.filter isSdist fileCandidates;
           eggs = builtins.filter isEgg fileCandidates;
           entries = (if preferWheel then binaryDist ++ sourceDist else sourceDist ++ binaryDist) ++ eggs;
-          lockFileEntry = builtins.head entries;
+          lockFileEntry = (
+            if lib.length entries > 0 then builtins.head entries
+            else throw "Missing suitable source/wheel file entry for ${name}"
+          );
           _isEgg = isEgg lockFileEntry;
         in
         rec {
@@ -94,7 +98,7 @@ pythonPackages.callPackage
         "toml" # Toml is an extra for setuptools-scm
       ];
       baseBuildInputs = lib.optional (! lib.elem name skipSetupToolsSCM) pythonPackages.setuptools-scm;
-      format = if isLocal || isGit || isUrl then "pyproject" else fileInfo.format;
+      format = if isDirectory || isGit || isUrl then "pyproject" else fileInfo.format;
     in
     buildPythonPackage {
       pname = moduleName name;
@@ -118,7 +122,7 @@ pythonPackages.callPackage
         baseBuildInputs
         ++ lib.optional (stdenv.buildPlatform != stdenv.hostPlatform) pythonPackages.setuptools
         ++ lib.optional (!isSource) (getManyLinuxDeps fileInfo.name).pkg
-        ++ lib.optional isLocal buildSystemPkgs
+        ++ lib.optional isDirectory buildSystemPkgs
         ++ lib.optional (!__isBootstrap) pythonPackages.poetry
       );
 
@@ -170,8 +174,10 @@ pythonPackages.callPackage
             {
               inherit (source) url;
             }
-        else if isLocal then
+        else if isDirectory then
           (poetryLib.cleanPythonSources { src = localDepPath; })
+        else if isFile then
+          localDepPath
         else if isLegacy then
           fetchFromLegacy
             {

pkgs/development/tools/poetry2nix/poetry2nix/overrides.nix

@@ -52,6 +52,18 @@ self: super:
     }
   );
 
+  anyio = super.anyio.overridePythonAttrs (old: {
+    postPatch = ''
+      substituteInPlace setup.py --replace 'setup()' 'setup(version="${old.version}")'
+    '';
+  });
+
+  arpeggio = super.arpeggio.overridePythonAttrs (
+    old: {
+      nativeBuildInputs = (old.nativeBuildInputs or [ ]) ++ [ self.pytest-runner ];
+    }
+  );
+
   astroid = super.astroid.overridePythonAttrs (
     old: rec {
       buildInputs = (old.buildInputs or [ ]) ++ [ self.pytest-runner ];
@@ -68,6 +80,14 @@ self: super:
     }
   );
 
+  backports-entry-points-selectable = super.backports-entry-points-selectable.overridePythonAttrs (old: {
+    postPatch = ''
+      substituteInPlace setup.py --replace \
+        'setuptools.setup()' \
+        'setuptools.setup(version="${old.version}")'
+    '';
+  });
+
   bcrypt = super.bcrypt.overridePythonAttrs (
     old: {
       buildInputs = (old.buildInputs or [ ]) ++ [ pkgs.libffi ];
@@ -493,7 +513,7 @@ self: super:
     old: {
       inherit (pkgs.python3Packages.jira) patches;
       buildInputs = (old.buildInputs or [ ]) ++ [
-        self.pytest-runner
+        self.pytestrunner
         self.cryptography
         self.pyjwt
       ];
@@ -620,7 +640,8 @@ self: super:
 
       buildInputs = (old.buildInputs or [ ])
         ++ lib.optional enableGhostscript pkgs.ghostscript
-        ++ lib.optional stdenv.isDarwin [ Cocoa ];
+        ++ lib.optional stdenv.isDarwin [ Cocoa ]
+        ++ [ self.certifi ];
 
       nativeBuildInputs = (old.nativeBuildInputs or [ ]) ++ [
         pkgs.pkg-config
@@ -962,6 +983,7 @@ self: super:
             ];
 
             PYARROW_BUILD_TYPE = "release";
+            PYARROW_WITH_DATASET = true;
             PYARROW_WITH_PARQUET = true;
             PYARROW_CMAKE_OPTIONS = [
               "-DCMAKE_INSTALL_RPATH=${ARROW_HOME}/lib"
@@ -1263,6 +1285,8 @@ self: super:
     }
   );
 
+  pytest-runner = super.pytest-runner or super.pytestrunner;
+
   pytest-pylint = super.pytest-pylint.overridePythonAttrs (
     old: {
       buildInputs = [ self.pytest-runner ];
@@ -1372,6 +1396,16 @@ self: super:
     }
   );
 
+  requests-unixsocket = super.requests-unixsocket.overridePythonAttrs (
+    old: {
+      nativeBuildInputs = (old.nativeBuildInputs or [ ]) ++ [ self.pbr ];
+    }
+  );
+
+  requestsexceptions = super.requestsexceptions.overridePythonAttrs (old: {
+    nativeBuildInputs = old.nativeBuildInputs ++ [ self.pbr ];
+  });
+
   rlp = super.rlp.overridePythonAttrs {
     preConfigure = ''
       substituteInPlace setup.py --replace \'setuptools-markdown\' ""
@@ -1831,4 +1865,58 @@ self: super:
       '';
     });
 
+  marisa-trie = super.marisa-trie.overridePythonAttrs (
+    old: {
+      buildInputs = (old.buildInputs or [ ]) ++ [ self.pytest-runner ];
+    }
+  );
+
+  ua-parser = super.ua-parser.overridePythonAttrs (
+    old: {
+      propagatedBuildInputs = (old.propagatedBuildInputs or [ ]) ++ [ self.pyyaml ];
+    }
+  );
+
+  lazy-object-proxy = super.lazy-object-proxy.overridePythonAttrs (
+    old: {
+      # disable the removal of pyproject.toml, required because of setuptools_scm
+      dontPreferSetupPy = true;
+    }
+  );
+
+  pendulum = super.pendulum.overridePythonAttrs (old: {
+    # Technically incorrect, but fixes the build error..
+    preInstall = lib.optionalString stdenv.isLinux ''
+      mv ./dist/*.whl $(echo ./dist/*.whl | sed s/'manylinux_[0-9]*_[0-9]*'/'manylinux1'/)
+    '';
+  });
+
+  pygraphviz = super.pygraphviz.overridePythonAttrs (old: {
+    nativeBuildInputs = (old.nativeBuildInputs or [ ]) ++ [ pkgs.pkg-config ];
+    buildInputs = (old.buildInputs or [ ]) ++ [ pkgs.graphviz ];
+  });
+
+  pyjsg = super.pyjsg.overridePythonAttrs (old: {
+    buildInputs = (old.buildInputs or [ ]) ++ [ self.pbr ];
+  });
+
+  pyshex = super.pyshex.overridePythonAttrs (old: {
+    buildInputs = (old.buildInputs or [ ]) ++ [ self.pbr ];
+  });
+
+  pyshexc = super.pyshexc.overridePythonAttrs (old: {
+    buildInputs = (old.buildInputs or [ ]) ++ [ self.pbr ];
+  });
+
+  shexjsg = super.shexjsg.overridePythonAttrs (old: {
+    buildInputs = (old.buildInputs or [ ]) ++ [ self.pbr ];
+  });
+
+  sparqlslurper = super.sparqlslurper.overridePythonAttrs (old: {
+    buildInputs = (old.buildInputs or [ ]) ++ [ self.pbr ];
+  });
+
+  tomli = super.tomli.overridePythonAttrs (old: {
+    buildInputs = (old.buildInputs or [ ]) ++ [ self.flit-core ];
+  });
 }

pkgs/development/tools/poetry2nix/poetry2nix/pep508.nix

@@ -132,7 +132,8 @@ let
               mVal = ''[a-zA-Z0-9\'"_\. \-]+'';
               mOp = "in|[!=<>]+";
               e = stripStr exprs.value;
-              m = builtins.map stripStr (builtins.match ''^(${mVal}) *(${mOp}) *(${mVal})$'' e);
+              m' = builtins.match ''^(${mVal}) +(${mOp}) *(${mVal})$'' e;
+              m = builtins.map stripStr (if m' != null then m' else builtins.match ''^(${mVal}) +(${mOp}) *(${mVal})$'' e);
               m0 = processVar (builtins.elemAt m 0);
               m2 = processVar (builtins.elemAt m 2);
             in

pkgs/development/tools/poetry2nix/poetry2nix/pkgs/poetry/default.nix

@@ -1,11 +1,18 @@
-{ lib, poetry2nix, python, fetchFromGitHub }:
+{ lib
+, poetry2nix
+, python
+, fetchFromGitHub
+, projectDir ? ./.
+, pyproject ? projectDir + "/pyproject.toml"
+, poetrylock ? projectDir + "/poetry.lock"
+}:
 
 
 poetry2nix.mkPoetryApplication {
 
   inherit python;
 
-  projectDir = ./.;
+  inherit projectDir pyproject poetrylock;
 
   # Don't include poetry in inputs
   __isBootstrap = true;

pkgs/development/tools/poetry2nix/poetry2nix/pkgs/poetry/poetry.lock

@@ -1,11 +1,3 @@
-[[package]]
-name = "appdirs"
-version = "1.4.4"
-description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"."
-category = "main"
-optional = false
-python-versions = "*"
-
 [[package]]
 name = "atomicwrites"
 version = "1.4.0"
@@ -16,29 +8,44 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 
 [[package]]
 name = "attrs"
-version = "20.3.0"
+version = "21.2.0"
 description = "Classes Without Boilerplate"
 category = "dev"
 optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
+python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 
 [package.extras]
-dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "zope.interface", "furo", "sphinx", "pre-commit"]
-docs = ["furo", "sphinx", "zope.interface"]
-tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "zope.interface"]
-tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six"]
+dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "furo", "sphinx", "sphinx-notfound-page", "pre-commit"]
+docs = ["furo", "sphinx", "zope.interface", "sphinx-notfound-page"]
+tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface"]
+tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins"]
+
+[[package]]
+name = "backports.entry-points-selectable"
+version = "1.1.0"
+description = "Compatibility shim providing selectable entry points for older implementations"
+category = "main"
+optional = false
+python-versions = ">=2.7"
+
+[package.dependencies]
+importlib-metadata = {version = "*", markers = "python_version < \"3.8\""}
+
+[package.extras]
+docs = ["sphinx", "jaraco.packaging (>=8.2)", "rst.linker (>=1.9)"]
+testing = ["pytest (>=4.6)", "pytest-flake8", "pytest-cov", "pytest-black (>=0.3.7)", "pytest-mypy", "pytest-checkdocs (>=2.4)", "pytest-enabler (>=1.0.1)"]
 
 [[package]]
 name = "backports.functools-lru-cache"
-version = "1.6.1"
+version = "1.6.4"
 description = "Backport of functools.lru_cache"
 category = "dev"
 optional = false
 python-versions = ">=2.6"
 
 [package.extras]
-docs = ["sphinx", "jaraco.packaging (>=3.2)", "rst.linker (>=1.9)"]
-testing = ["pytest (>=3.5,!=3.7.3)", "pytest-checkdocs (>=1.2.3)", "pytest-flake8", "pytest-black-multipy", "pytest-cov"]
+docs = ["sphinx", "jaraco.packaging (>=8.2)", "rst.linker (>=1.9)"]
+testing = ["pytest (>=4.6)", "pytest-black (>=0.3.7)", "pytest-mypy", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "pytest-checkdocs (>=2.4)"]
 
 [[package]]
 name = "cachecontrol"
@@ -72,7 +79,7 @@ msgpack = ["msgpack-python (>=0.5,<0.6)"]
 
 [[package]]
 name = "certifi"
-version = "2020.12.5"
+version = "2021.5.30"
 description = "Python package for providing Mozilla's CA Bundle."
 category = "main"
 optional = false
@@ -80,7 +87,7 @@ python-versions = "*"
 
 [[package]]
 name = "cffi"
-version = "1.14.5"
+version = "1.14.6"
 description = "Foreign Function Interface for Python calling C code."
 category = "main"
 optional = false
@@ -91,7 +98,7 @@ pycparser = "*"
 
 [[package]]
 name = "cfgv"
-version = "3.2.0"
+version = "3.3.0"
 description = "Validate configuration and produce human readable error messages."
 category = "dev"
 optional = false
@@ -189,6 +196,25 @@ python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*"
 
 [package.dependencies]
 cffi = ">=1.8,<1.11.3 || >1.11.3"
+six = ">=1.4.1"
+
+[package.extras]
+docs = ["sphinx (>=1.6.5,!=1.8.0,!=3.1.0,!=3.1.1)", "sphinx-rtd-theme"]
+docstest = ["doc8", "pyenchant (>=1.6.11)", "twine (>=1.12.0)", "sphinxcontrib-spelling (>=4.0.1)"]
+pep8test = ["black", "flake8", "flake8-import-order", "pep8-naming"]
+ssh = ["bcrypt (>=3.1.5)"]
+test = ["pytest (>=3.6.0,!=3.9.0,!=3.9.1,!=3.9.2)", "pretend", "iso8601", "pytz", "hypothesis (>=1.11.4,!=3.79.2)"]
+
+[[package]]
+name = "cryptography"
+version = "3.3.2"
+description = "cryptography is a package which provides cryptographic recipes and primitives to Python developers."
+category = "main"
+optional = false
+python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*"
+
+[package.dependencies]
+cffi = ">=1.12"
 enum34 = {version = "*", markers = "python_version < \"3\""}
 ipaddress = {version = "*", markers = "python_version < \"3\""}
 six = ">=1.4.1"
@@ -202,7 +228,7 @@ test = ["pytest (>=3.6.0,!=3.9.0,!=3.9.1,!=3.9.2)", "pretend", "iso8601", "pytz"
 
 [[package]]
 name = "cryptography"
-version = "3.4.6"
+version = "3.4.7"
 description = "cryptography is a package which provides cryptographic recipes and primitives to Python developers."
 category = "main"
 optional = false
@@ -221,7 +247,7 @@ test = ["pytest (>=6.0)", "pytest-cov", "pytest-subtests", "pytest-xdist", "pret
 
 [[package]]
 name = "distlib"
-version = "0.3.1"
+version = "0.3.2"
 description = "Distribution utilities"
 category = "main"
 optional = false
@@ -317,14 +343,14 @@ six = "*"
 
 [[package]]
 name = "identify"
-version = "2.1.0"
+version = "2.2.13"
 description = "File identification library for Python"
 category = "dev"
 optional = false
 python-versions = ">=3.6.1"
 
 [package.extras]
-license = ["editdistance"]
+license = ["editdistance-s"]
 
 [[package]]
 name = "idna"
@@ -380,14 +406,26 @@ python-versions = "*"
 
 [[package]]
 name = "jeepney"
-version = "0.6.0"
+version = "0.4.3"
+description = "Low-level, pure Python DBus protocol wrapper."
+category = "main"
+optional = false
+python-versions = ">=3.5"
+
+[package.extras]
+dev = ["testpath"]
+
+[[package]]
+name = "jeepney"
+version = "0.7.1"
 description = "Low-level, pure Python DBus protocol wrapper."
 category = "main"
 optional = false
 python-versions = ">=3.6"
 
 [package.extras]
-test = ["pytest", "pytest-trio", "pytest-asyncio", "testpath", "trio"]
+test = ["pytest", "pytest-trio", "pytest-asyncio", "testpath", "trio", "async-timeout"]
+trio = ["trio", "async-generator"]
 
 [[package]]
 name = "keyring"
@@ -479,15 +517,15 @@ six = ">=1.0.0,<2.0.0"
 
 [[package]]
 name = "more-itertools"
-version = "8.6.0"
+version = "7.2.0"
 description = "More routines for operating on iterables, beyond itertools"
 category = "dev"
 optional = false
-python-versions = ">=3.5"
+python-versions = ">=3.4"
 
 [[package]]
 name = "more-itertools"
-version = "8.7.0"
+version = "8.8.0"
 description = "More routines for operating on iterables, beyond itertools"
 category = "dev"
 optional = false
@@ -503,7 +541,7 @@ python-versions = "*"
 
 [[package]]
 name = "nodeenv"
-version = "1.5.0"
+version = "1.6.0"
 description = "Node.js virtual environment builder"
 category = "dev"
 optional = false
@@ -530,7 +568,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 
 [[package]]
 name = "pathlib2"
-version = "2.3.5"
+version = "2.3.6"
 description = "Object-oriented filesystem paths"
 category = "main"
 optional = false
@@ -553,7 +591,7 @@ ptyprocess = ">=0.5"
 
 [[package]]
 name = "pkginfo"
-version = "1.7.0"
+version = "1.7.1"
 description = "Query metadatdata from sdists / bdists / installed packages."
 category = "main"
 optional = false
@@ -562,6 +600,14 @@ python-versions = "*"
 [package.extras]
 testing = ["nose", "coverage"]
 
+[[package]]
+name = "platformdirs"
+version = "2.0.2"
+description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"."
+category = "main"
+optional = false
+python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
+
 [[package]]
 name = "pluggy"
 version = "0.13.1"
@@ -578,7 +624,7 @@ dev = ["pre-commit", "tox"]
 
 [[package]]
 name = "poetry-core"
-version = "1.0.2"
+version = "1.0.4"
 description = "Poetry PEP 517 Build Backend"
 category = "main"
 optional = false
@@ -593,7 +639,7 @@ typing = {version = ">=3.7.4.1,<4.0.0.0", markers = "python_version >= \"2.7\" a
 
 [[package]]
 name = "pre-commit"
-version = "2.10.1"
+version = "2.14.0"
 description = "A framework for managing and maintaining multi-language pre-commit hooks."
 category = "dev"
 optional = false
@@ -635,7 +681,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 
 [[package]]
 name = "pylev"
-version = "1.3.0"
+version = "1.4.0"
 description = "A pure Python Levenshtein implementation that's not freaking GPL'd."
 category = "main"
 optional = false
@@ -703,7 +749,7 @@ testing = ["argcomplete", "hypothesis (>=3.56)", "mock", "nose", "requests", "xm
 
 [[package]]
 name = "pytest-cov"
-version = "2.11.1"
+version = "2.12.1"
 description = "Pytest plugin for measuring coverage."
 category = "dev"
 optional = false
@@ -712,9 +758,10 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 [package.dependencies]
 coverage = ">=5.2.1"
 pytest = ">=4.6"
+toml = "*"
 
 [package.extras]
-testing = ["fields", "hunter", "process-tests (==2.0.2)", "six", "pytest-xdist", "virtualenv"]
+testing = ["fields", "hunter", "process-tests", "six", "pytest-xdist", "virtualenv"]
 
 [[package]]
 name = "pytest-mock"
@@ -811,6 +858,18 @@ cryptography = "*"
 [package.extras]
 dbus-python = ["dbus-python"]
 
+[[package]]
+name = "secretstorage"
+version = "3.2.0"
+description = "Python bindings to FreeDesktop.org Secret Service API"
+category = "main"
+optional = false
+python-versions = ">=3.5"
+
+[package.dependencies]
+cryptography = ">=2.0"
+jeepney = ">=0.4.2"
+
 [[package]]
 name = "secretstorage"
 version = "3.3.1"
@@ -833,7 +892,7 @@ python-versions = "!=3.0,!=3.1,!=3.2,!=3.3,>=2.6"
 
 [[package]]
 name = "singledispatch"
-version = "3.6.1"
+version = "3.7.0"
 description = "Backport functools.singledispatch from Python 3.4 to Python 2.6-3.3."
 category = "main"
 optional = false
@@ -844,11 +903,11 @@ six = "*"
 
 [package.extras]
 docs = ["sphinx", "jaraco.packaging (>=8.2)", "rst.linker (>=1.9)"]
-testing = ["pytest (>=4.6)", "pytest-checkdocs (>=1.2.3)", "pytest-flake8", "pytest-cov", "pytest-black (>=0.3.7)", "unittest2"]
+testing = ["pytest (>=4.6)", "pytest-flake8", "pytest-cov", "pytest-black (>=0.3.7)", "unittest2", "pytest-checkdocs (>=2.4)"]
 
 [[package]]
 name = "six"
-version = "1.15.0"
+version = "1.16.0"
 description = "Python 2 and 3 compatibility utilities"
 category = "main"
 optional = false
@@ -880,7 +939,7 @@ python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"
 
 [[package]]
 name = "tomlkit"
-version = "0.7.0"
+version = "0.7.2"
 description = "Style preserving TOML library"
 category = "main"
 optional = false
@@ -893,7 +952,7 @@ typing = {version = ">=3.6,<4.0", markers = "python_version >= \"2.7\" and pytho
 
 [[package]]
 name = "tox"
-version = "3.23.0"
+version = "3.24.2"
 description = "tox is a generic virtualenv management and test command line tool"
 category = "dev"
 optional = false
@@ -916,15 +975,15 @@ testing = ["flaky (>=3.4.0)", "freezegun (>=0.3.11)", "psutil (>=5.6.1)", "pytes
 
 [[package]]
 name = "typing"
-version = "3.7.4.3"
+version = "3.10.0.0"
 description = "Type Hints for Python"
 category = "main"
 optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
+python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, <3.5"
 
 [[package]]
 name = "typing-extensions"
-version = "3.7.4.3"
+version = "3.10.0.0"
 description = "Backported and Experimental Type Hints for Python 3.5+"
 category = "main"
 optional = false
@@ -945,24 +1004,25 @@ socks = ["PySocks (>=1.5.6,!=1.5.7,<2.0)"]
 
 [[package]]
 name = "virtualenv"
-version = "20.4.2"
+version = "20.7.2"
 description = "Virtual Python Environment builder"
 category = "main"
 optional = false
-python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,>=2.7"
+python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7"
 
 [package.dependencies]
-appdirs = ">=1.4.3,<2"
+"backports.entry-points-selectable" = ">=1.0.4"
 distlib = ">=0.3.1,<1"
 filelock = ">=3.0.0,<4"
 importlib-metadata = {version = ">=0.12", markers = "python_version < \"3.8\""}
 importlib-resources = {version = ">=1.0", markers = "python_version < \"3.7\""}
 pathlib2 = {version = ">=2.3.3,<3", markers = "python_version < \"3.4\" and sys_platform != \"win32\""}
+platformdirs = ">=2,<3"
 six = ">=1.9.0,<2"
 
 [package.extras]
 docs = ["proselint (>=0.10.2)", "sphinx (>=3)", "sphinx-argparse (>=0.2.5)", "sphinx-rtd-theme (>=0.4.3)", "towncrier (>=19.9.0rc1)"]
-testing = ["coverage (>=4)", "coverage-enable-subprocess (>=1)", "flaky (>=3)", "pytest (>=4)", "pytest-env (>=0.6.2)", "pytest-freezegun (>=0.4.1)", "pytest-mock (>=2)", "pytest-randomly (>=1)", "pytest-timeout (>=1)", "packaging (>=20.0)", "xonsh (>=0.9.16)"]
+testing = ["coverage (>=4)", "coverage-enable-subprocess (>=1)", "flaky (>=3)", "pytest (>=4)", "pytest-env (>=0.6.2)", "pytest-freezegun (>=0.4.1)", "pytest-mock (>=2)", "pytest-randomly (>=1)", "pytest-timeout (>=1)", "packaging (>=20.0)"]
 
 [[package]]
 name = "wcwidth"
@@ -1001,24 +1061,24 @@ testing = ["pathlib2", "unittest2", "jaraco.itertools", "func-timeout"]
 [metadata]
 lock-version = "1.1"
 python-versions = "~2.7 || ^3.5"
-content-hash = "f716089bf560bb051980ddb5ff40b200027e9d9f2ed17fc7dd5576d80f5ad62a"
+content-hash = "e45e80a8cc2d64595c7f7e7a494dc8e80a7c1cd9f87cfd89539330e74823c06a"
 
 [metadata.files]
-appdirs = [
-    {file = "appdirs-1.4.4-py2.py3-none-any.whl", hash = "sha256:a841dacd6b99318a741b166adb07e19ee71a274450e68237b4650ca1055ab128"},
-    {file = "appdirs-1.4.4.tar.gz", hash = "sha256:7d5d0167b2b1ba821647616af46a749d1c653740dd0d2415100fe26e27afdf41"},
-]
 atomicwrites = [
     {file = "atomicwrites-1.4.0-py2.py3-none-any.whl", hash = "sha256:6d1784dea7c0c8d4a5172b6c620f40b6e4cbfdf96d783691f2e1302a7b88e197"},
     {file = "atomicwrites-1.4.0.tar.gz", hash = "sha256:ae70396ad1a434f9c7046fd2dd196fc04b12f9e91ffb859164193be8b6168a7a"},
 ]
 attrs = [
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+    {file = "pylev-1.4.0.tar.gz", hash = "sha256:9e77e941042ad3a4cc305dcdf2b2dec1aec2fbe3dd9015d2698ad02b173006d1"},
 ]
 pyparsing = [
     {file = "pyparsing-2.4.7-py2.py3-none-any.whl", hash = "sha256:ef9d7589ef3c200abe66653d3f1ab1033c3c419ae9b9bdb1240a85b024efc88b"},
@@ -1369,8 +1462,8 @@ pytest = [
     {file = "pytest-5.4.3.tar.gz", hash = "sha256:7979331bfcba207414f5e1263b5a0f8f521d0f457318836a7355531ed1a4c7d8"},
 ]
 pytest-cov = [
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-    {file = "pytest_cov-2.11.1-py2.py3-none-any.whl", hash = "sha256:bdb9fdb0b85a7cc825269a4c56b48ccaa5c7e365054b6038772c32ddcdc969da"},
+    {file = "pytest-cov-2.12.1.tar.gz", hash = "sha256:261ceeb8c227b726249b376b8526b600f38667ee314f910353fa318caa01f4d7"},
+    {file = "pytest_cov-2.12.1-py2.py3-none-any.whl", hash = "sha256:261bb9e47e65bd099c89c3edf92972865210c36813f80ede5277dceb77a4a62a"},
 ]
 pytest-mock = [
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@@ -1390,18 +1483,26 @@ pyyaml = [
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     {file = "PyYAML-5.4.1-cp36-cp36m-macosx_10_9_x86_64.whl", hash = "sha256:6c78645d400265a062508ae399b60b8c167bf003db364ecb26dcab2bda048253"},
     {file = "PyYAML-5.4.1-cp36-cp36m-manylinux1_x86_64.whl", hash = "sha256:4e0583d24c881e14342eaf4ec5fbc97f934b999a6828693a99157fde912540cc"},
+    {file = "PyYAML-5.4.1-cp36-cp36m-manylinux2014_aarch64.whl", hash = "sha256:72a01f726a9c7851ca9bfad6fd09ca4e090a023c00945ea05ba1638c09dc3347"},
+    {file = "PyYAML-5.4.1-cp36-cp36m-manylinux2014_s390x.whl", hash = "sha256:895f61ef02e8fed38159bb70f7e100e00f471eae2bc838cd0f4ebb21e28f8541"},
     {file = "PyYAML-5.4.1-cp36-cp36m-win32.whl", hash = "sha256:3bd0e463264cf257d1ffd2e40223b197271046d09dadf73a0fe82b9c1fc385a5"},
     {file = "PyYAML-5.4.1-cp36-cp36m-win_amd64.whl", hash = "sha256:e4fac90784481d221a8e4b1162afa7c47ed953be40d31ab4629ae917510051df"},
     {file = "PyYAML-5.4.1-cp37-cp37m-macosx_10_9_x86_64.whl", hash = "sha256:5accb17103e43963b80e6f837831f38d314a0495500067cb25afab2e8d7a4018"},
     {file = "PyYAML-5.4.1-cp37-cp37m-manylinux1_x86_64.whl", hash = "sha256:e1d4970ea66be07ae37a3c2e48b5ec63f7ba6804bdddfdbd3cfd954d25a82e63"},
+    {file = "PyYAML-5.4.1-cp37-cp37m-manylinux2014_aarch64.whl", hash = "sha256:cb333c16912324fd5f769fff6bc5de372e9e7a202247b48870bc251ed40239aa"},
+    {file = "PyYAML-5.4.1-cp37-cp37m-manylinux2014_s390x.whl", hash = "sha256:fe69978f3f768926cfa37b867e3843918e012cf83f680806599ddce33c2c68b0"},
     {file = "PyYAML-5.4.1-cp37-cp37m-win32.whl", hash = "sha256:dd5de0646207f053eb0d6c74ae45ba98c3395a571a2891858e87df7c9b9bd51b"},
     {file = "PyYAML-5.4.1-cp37-cp37m-win_amd64.whl", hash = "sha256:08682f6b72c722394747bddaf0aa62277e02557c0fd1c42cb853016a38f8dedf"},
     {file = "PyYAML-5.4.1-cp38-cp38-macosx_10_9_x86_64.whl", hash = "sha256:d2d9808ea7b4af864f35ea216be506ecec180628aced0704e34aca0b040ffe46"},
     {file = "PyYAML-5.4.1-cp38-cp38-manylinux1_x86_64.whl", hash = "sha256:8c1be557ee92a20f184922c7b6424e8ab6691788e6d86137c5d93c1a6ec1b8fb"},
+    {file = "PyYAML-5.4.1-cp38-cp38-manylinux2014_aarch64.whl", hash = "sha256:fd7f6999a8070df521b6384004ef42833b9bd62cfee11a09bda1079b4b704247"},
+    {file = "PyYAML-5.4.1-cp38-cp38-manylinux2014_s390x.whl", hash = "sha256:bfb51918d4ff3d77c1c856a9699f8492c612cde32fd3bcd344af9be34999bfdc"},
     {file = "PyYAML-5.4.1-cp38-cp38-win32.whl", hash = "sha256:fa5ae20527d8e831e8230cbffd9f8fe952815b2b7dae6ffec25318803a7528fc"},
     {file = "PyYAML-5.4.1-cp38-cp38-win_amd64.whl", hash = "sha256:0f5f5786c0e09baddcd8b4b45f20a7b5d61a7e7e99846e3c799b05c7c53fa696"},
     {file = "PyYAML-5.4.1-cp39-cp39-macosx_10_9_x86_64.whl", hash = "sha256:294db365efa064d00b8d1ef65d8ea2c3426ac366c0c4368d930bf1c5fb497f77"},
     {file = "PyYAML-5.4.1-cp39-cp39-manylinux1_x86_64.whl", hash = "sha256:74c1485f7707cf707a7aef42ef6322b8f97921bd89be2ab6317fd782c2d53183"},
+    {file = "PyYAML-5.4.1-cp39-cp39-manylinux2014_aarch64.whl", hash = "sha256:d483ad4e639292c90170eb6f7783ad19490e7a8defb3e46f97dfe4bacae89122"},
+    {file = "PyYAML-5.4.1-cp39-cp39-manylinux2014_s390x.whl", hash = "sha256:fdc842473cd33f45ff6bce46aea678a54e3d21f1b61a7750ce3c498eedfe25d6"},
     {file = "PyYAML-5.4.1-cp39-cp39-win32.whl", hash = "sha256:49d4cdd9065b9b6e206d0595fee27a96b5dd22618e7520c33204a4a3239d5b10"},
     {file = "PyYAML-5.4.1-cp39-cp39-win_amd64.whl", hash = "sha256:c20cfa2d49991c8b4147af39859b167664f2ad4561704ee74c1de03318e898db"},
     {file = "PyYAML-5.4.1.tar.gz", hash = "sha256:607774cbba28732bfa802b54baa7484215f530991055bb562efbed5b2f20a45e"},
@@ -1429,6 +1530,8 @@ scandir = [
 ]
 secretstorage = [
     {file = "SecretStorage-2.3.1.tar.gz", hash = "sha256:3af65c87765323e6f64c83575b05393f9e003431959c9395d1791d51497f29b6"},
+    {file = "SecretStorage-3.2.0-py3-none-any.whl", hash = "sha256:ed5279d788af258e4676fa26b6efb6d335a31f1f9f529b6f1e200f388fac33e1"},
+    {file = "SecretStorage-3.2.0.tar.gz", hash = "sha256:46305c3847ee3f7252b284e0eee5590fa6341c891104a2fd2313f8798c615a82"},
     {file = "SecretStorage-3.3.1-py3-none-any.whl", hash = "sha256:422d82c36172d88d6a0ed5afdec956514b189ddbfb72fefab0c8a1cee4eaf71f"},
     {file = "SecretStorage-3.3.1.tar.gz", hash = "sha256:fd666c51a6bf200643495a04abb261f83229dcb6fd8472ec393df7ffc8b6f195"},
 ]
@@ -1437,12 +1540,12 @@ shellingham = [
     {file = "shellingham-1.4.0.tar.gz", hash = "sha256:4855c2458d6904829bd34c299f11fdeed7cfefbf8a2c522e4caea6cd76b3171e"},
 ]
 singledispatch = [
-    {file = "singledispatch-3.6.1-py2.py3-none-any.whl", hash = "sha256:85c97f94c8957fa4e6dab113156c182fb346d56d059af78aad710bced15f16fb"},
-    {file = "singledispatch-3.6.1.tar.gz", hash = "sha256:58b46ce1cc4d43af0aac3ac9a047bdb0f44e05f0b2fa2eec755863331700c865"},
+    {file = "singledispatch-3.7.0-py2.py3-none-any.whl", hash = "sha256:bc77afa97c8a22596d6d4fc20f1b7bdd2b86edc2a65a4262bdd7cc3cc19aa989"},
+    {file = "singledispatch-3.7.0.tar.gz", hash = "sha256:c1a4d5c1da310c3fd8fccfb8d4e1cb7df076148fd5d858a819e37fffe44f3092"},
 ]
 six = [
-    {file = "six-1.15.0-py2.py3-none-any.whl", hash = "sha256:8b74bedcbbbaca38ff6d7491d76f2b06b3592611af620f8426e82dddb04a5ced"},
-    {file = "six-1.15.0.tar.gz", hash = "sha256:30639c035cdb23534cd4aa2dd52c3bf48f06e5f4a941509c8bafd8ce11080259"},
+    {file = "six-1.16.0-py2.py3-none-any.whl", hash = "sha256:8abb2f1d86890a2dfb989f9a77cfcfd3e47c2a354b01111771326f8aa26e0254"},
+    {file = "six-1.16.0.tar.gz", hash = "sha256:1e61c37477a1626458e36f7b1d82aa5c9b094fa4802892072e49de9c60c4c926"},
 ]
 subprocess32 = [
     {file = "subprocess32-3.5.4-cp27-cp27m-macosx_10_6_intel.whl", hash = "sha256:88e37c1aac5388df41cc8a8456bb49ebffd321a3ad4d70358e3518176de3a56b"},
@@ -1457,29 +1560,30 @@ toml = [
     {file = "toml-0.10.2.tar.gz", hash = "sha256:b3bda1d108d5dd99f4a20d24d9c348e91c4db7ab1b749200bded2f839ccbe68f"},
 ]
 tomlkit = [
-    {file = "tomlkit-0.7.0-py2.py3-none-any.whl", hash = "sha256:6babbd33b17d5c9691896b0e68159215a9387ebfa938aa3ac42f4a4beeb2b831"},
-    {file = "tomlkit-0.7.0.tar.gz", hash = "sha256:ac57f29693fab3e309ea789252fcce3061e19110085aa31af5446ca749325618"},
+    {file = "tomlkit-0.7.2-py2.py3-none-any.whl", hash = "sha256:173ad840fa5d2aac140528ca1933c29791b79a374a0861a80347f42ec9328117"},
+    {file = "tomlkit-0.7.2.tar.gz", hash = "sha256:d7a454f319a7e9bd2e249f239168729327e4dd2d27b17dc68be264ad1ce36754"},
 ]
 tox = [
-    {file = "tox-3.23.0-py2.py3-none-any.whl", hash = "sha256:e007673f3595cede9b17a7c4962389e4305d4a3682a6c5a4159a1453b4f326aa"},
-    {file = "tox-3.23.0.tar.gz", hash = "sha256:05a4dbd5e4d3d8269b72b55600f0b0303e2eb47ad5c6fe76d3576f4c58d93661"},
+    {file = "tox-3.24.2-py2.py3-none-any.whl", hash = "sha256:d45d39203b10fdb2f6887c6779865e31de82cea07419a739844cc4bd4b3493e2"},
+    {file = "tox-3.24.2.tar.gz", hash = "sha256:ae442d4d51d5a3afb3711e4c7d94f5ca8461afd27c53f5dd994aba34896cf02d"},
 ]
 typing = [
-    {file = "typing-3.7.4.3-py2-none-any.whl", hash = "sha256:283d868f5071ab9ad873e5e52268d611e851c870a2ba354193026f2dfb29d8b5"},
-    {file = "typing-3.7.4.3.tar.gz", hash = "sha256:1187fb9c82fd670d10aa07bbb6cfcfe4bdda42d6fab8d5134f04e8c4d0b71cc9"},
+    {file = "typing-3.10.0.0-py2-none-any.whl", hash = "sha256:c7219ef20c5fbf413b4567092adfc46fa6203cb8454eda33c3fc1afe1398a308"},
+    {file = "typing-3.10.0.0-py3-none-any.whl", hash = "sha256:12fbdfbe7d6cca1a42e485229afcb0b0c8259258cfb919b8a5e2a5c953742f89"},
+    {file = "typing-3.10.0.0.tar.gz", hash = "sha256:13b4ad211f54ddbf93e5901a9967b1e07720c1d1b78d596ac6a439641aa1b130"},
 ]
 typing-extensions = [
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-    {file = "typing_extensions-3.7.4.3-py3-none-any.whl", hash = "sha256:7cb407020f00f7bfc3cb3e7881628838e69d8f3fcab2f64742a5e76b2f841918"},
-    {file = "typing_extensions-3.7.4.3.tar.gz", hash = "sha256:99d4073b617d30288f569d3f13d2bd7548c3a7e4c8de87db09a9d29bb3a4a60c"},
+    {file = "typing_extensions-3.10.0.0-py2-none-any.whl", hash = "sha256:0ac0f89795dd19de6b97debb0c6af1c70987fd80a2d62d1958f7e56fcc31b497"},
+    {file = "typing_extensions-3.10.0.0-py3-none-any.whl", hash = "sha256:779383f6086d90c99ae41cf0ff39aac8a7937a9283ce0a414e5dd782f4c94a84"},
+    {file = "typing_extensions-3.10.0.0.tar.gz", hash = "sha256:50b6f157849174217d0656f99dc82fe932884fb250826c18350e159ec6cdf342"},
 ]
 urllib3 = [
     {file = "urllib3-1.25.11-py2.py3-none-any.whl", hash = "sha256:f5321fbe4bf3fefa0efd0bfe7fb14e90909eb62a48ccda331726b4319897dd5e"},
     {file = "urllib3-1.25.11.tar.gz", hash = "sha256:8d7eaa5a82a1cac232164990f04874c594c9453ec55eef02eab885aa02fc17a2"},
 ]
 virtualenv = [
-    {file = "virtualenv-20.4.2-py2.py3-none-any.whl", hash = "sha256:2be72df684b74df0ea47679a7df93fd0e04e72520022c57b479d8f881485dbe3"},
-    {file = "virtualenv-20.4.2.tar.gz", hash = "sha256:147b43894e51dd6bba882cf9c282447f780e2251cd35172403745fc381a0a80d"},
+    {file = "virtualenv-20.7.2-py2.py3-none-any.whl", hash = "sha256:e4670891b3a03eb071748c569a87cceaefbf643c5bac46d996c5a45c34aa0f06"},
+    {file = "virtualenv-20.7.2.tar.gz", hash = "sha256:9ef4e8ee4710826e98ff3075c9a4739e2cb1040de6a2a8d35db0055840dc96a0"},
 ]
 wcwidth = [
     {file = "wcwidth-0.2.5-py2.py3-none-any.whl", hash = "sha256:beb4802a9cebb9144e99086eff703a642a13d6a0052920003a230f3294bbe784"},

pkgs/development/tools/poetry2nix/poetry2nix/pkgs/poetry/pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "poetry"
-version = "1.1.5"
+version = "1.1.8"
 description = "Python dependency management and packaging made easy."
 authors = [
     "Sébastien Eustace <sebastien@eustace.io>"
@@ -24,7 +24,7 @@ classifiers = [
 [tool.poetry.dependencies]
 python = "~2.7 || ^3.5"
 
-poetry-core = "~1.0.2"
+poetry-core = "~1.0.4"
 cleo = "^0.8.1"
 clikit = "^0.6.2"
 crashtest = { version = "^0.3.0", python = "^3.6" }

pkgs/development/tools/poetry2nix/poetry2nix/pkgs/poetry/src.json

@@ -1,7 +1,7 @@
 {
     "owner": "python-poetry",
     "repo": "poetry",
-    "rev": "a9704149394151f4d0d28cd5d8ee2283c7d10787",
-    "sha256": "0bv6irpscpak6pldkzrx4j12dqnpfz5h8fy5lliglizv0avh60hf",
+    "rev": "bce13c14f73060b3abbb791dea585d8fde26eaef",
+    "sha256": "H3Za2p5Sh+K7f2TEFV7vQpCEUyiGBNTu1clIi86Sj2E=",
     "fetchSubmodules": true
 }

pkgs/development/tools/poetry2nix/update

@@ -16,7 +16,7 @@ mv poetry2nix-master/* .
 mkdir build
 cp *.* build/
 cp -r pkgs hooks bin build/
-rm build/shell.nix build/generate.py build/overlay.nix build/flake.*
+rm build/shell.nix build/generate.py build/overlay.nix build/flake.* build/check-fmt.nix
 
 cat > build/README.md << EOF
 Dont change these files here, they are maintained at https://github.com/nix-community/poetry2nix