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Merge pull request #280763 from r-ryantm/auto-update/python311Packages.biopython

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python311Packages.biopython: 1.82 -> 1.83
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Weijia Wang 2024-01-21 20:14:40 +01:00 committed by GitHub
commit 7606b5e96d
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1 changed files with 25 additions and 7 deletions
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32
pkgs/development/python-modules/biopython/default.nix
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@ -1,25 +1,43 @@
{ lib
, buildPythonPackage
, fetchPypi
, pythonOlder
, setuptools
, numpy
, isPy3k
}:
buildPythonPackage rec {
pname = "biopython";
version = "1.82";
format = "setuptools";
version = "1.83";
pyproject = true;
disabled = pythonOlder "3.9";
src = fetchPypi {
inherit pname version;
hash = "sha256-qbENlZroipdEqRxs42AfTIbn7EFnm8k8KfZ5IY9hZ7s=";
hash = "sha256-eOa/t43mMDQDev01/nfLbgqeW2Jwa+z3in2SKxbtg/c=";
};
disabled = !isPy3k;
nativeBuildInputs = [
setuptools
];
propagatedBuildInputs = [ numpy ];
# Checks try to write to $HOME, which does not work with nix
doCheck = false;
pythonImportsCheck = [
"Bio"
];
checkPhase = ''
runHook preCheck
export HOME=$(mktemp -d)
cd Tests
python run_tests.py --offline
runHook postCheck
'';
meta = {
description = "Python library for bioinformatics";
longDescription = ''