cudaPackages.cudatoolkit: use autoPatchelf

...to ensure correctness (in the sense that all DT_NEEDED libraries are
verified to be discoverable through the runpaths)

pkgs/development/compilers/cudatoolkit/common.nix

@@ -5,6 +5,8 @@ args@
 , name ? ""
 , developerProgram ? false
 , runPatches ? []
+, autoPatchelfHook
+, autoAddOpenGLRunpathHook
 , addOpenGLRunpath
 , alsa-lib
 , expat
@@ -16,15 +18,25 @@ args@
 , glibc
 , gtk2
 , lib
+, libxkbcommon
+, libkrb5
+, krb5
 , makeWrapper
 , ncurses5
+, numactl
+, nss
 , perl
-, python3
+, python3 # FIXME: CUDAToolkit 10 may still need python27
+, pulseaudio
 , requireFile
 , backendStdenv # E.g. gcc11Stdenv, set in extension.nix
 , unixODBC
+, wayland
 , xorg
 , zlib
+, freeglut
+, libGLU
+, libsForQt5
 }:
 
 backendStdenv.mkDerivation rec {
@@ -52,12 +64,80 @@ backendStdenv.mkDerivation rec {
 
   outputs = [ "out" "lib" "doc" ];
 
-  nativeBuildInputs = [ perl makeWrapper addOpenGLRunpath ];
-  buildInputs = [ gdk-pixbuf ]; # To get $GDK_PIXBUF_MODULE_FILE via setup-hook
+  nativeBuildInputs = [
+    perl
+    makeWrapper
+    addOpenGLRunpath
+    autoPatchelfHook
+    autoAddOpenGLRunpathHook
+  ] ++ lib.optionals (lib.versionOlder version "11") [
+    libsForQt5.wrapQtAppsHook
+  ];
+  buildInputs = [
+    # To get $GDK_PIXBUF_MODULE_FILE via setup-hook
+    gdk-pixbuf
+
+    # For autoPatchelf
+    ncurses5
+    expat
+    python3
+    zlib
+    glibc
+    xorg.libX11
+    xorg.libXext
+    xorg.libXrender
+    xorg.libXt
+    xorg.libXtst
+    xorg.libXi
+    xorg.libXext
+    xorg.libXdamage
+    xorg.libxcb
+    xorg.xcbutilimage
+    xorg.xcbutilrenderutil
+    xorg.xcbutilwm
+    xorg.xcbutilkeysyms
+    pulseaudio
+    libxkbcommon
+    libkrb5
+    krb5
+    gtk2
+    glib
+    fontconfig
+    freetype
+    numactl
+    nss
+    unixODBC
+    alsa-lib
+    wayland
+  ] ++ lib.optionals (lib.versionOlder version "11") [
+    libsForQt5.qt5.qtwebengine
+    freeglut
+    libGLU
+  ];
+
+  # Prepended to runpaths by autoPatchelf.
+  # The order inherited from older rpath preFixup code
   runtimeDependencies = [
-    ncurses5 expat python3 zlib glibc
-    xorg.libX11 xorg.libXext xorg.libXrender xorg.libXt xorg.libXtst xorg.libXi xorg.libXext
-    gtk2 glib fontconfig freetype unixODBC alsa-lib
+    (placeholder "lib")
+    (placeholder "out")
+    "${placeholder "out"}/nvvm"
+    # Is it not handled by autoPatchelf automatically?
+    "${lib.getLib backendStdenv.cc.cc}/lib64"
+    "${placeholder "out"}/jre/lib/amd64/jli"
+    "${placeholder "out"}/lib64"
+    "${placeholder "out"}/nvvm/lib64"
+  ];
+
+  autoPatchelfIgnoreMissingDeps = [
+    # This is the hardware-dependent userspace driver that comes from
+    # nvidia_x11 package. It must be deployed at runtime in
+    # /run/opengl-driver/lib or pointed at by LD_LIBRARY_PATH variable, rather
+    # than pinned in runpath
+    "libcuda.so.1"
+
+    # The krb5 expression ships libcom_err.so.3 but cudatoolkit asks for the
+    # older
+    "libcom_err.so.2"
   ];
 
   unpackPhase = ''
@@ -198,7 +278,7 @@ backendStdenv.mkDerivation rec {
 
   preFixup =
     let rpath = lib.concatStringsSep ":" [
-      (lib.makeLibraryPath (runtimeDependencies ++ [ "$lib" "$out" "$out/nvvm" ]))
+      (lib.makeLibraryPath (buildInputs ++ [ "$lib" "$out" "$out/nvvm" ]))
 
       # The path to libstdc++ and such
       #