Update Julia to today's revision

pkgs/development/compilers/julia/default.nix

@@ -1,21 +1,21 @@
 { stdenv, fetchgit, gfortran, perl, m4, llvm, gmp, pcre, zlib
  , readline, fftwSinglePrec, fftw, libunwind, suitesparse, glpk, fetchurl
  , ncurses, libunistring, lighttpd, patchelf, openblas, liblapack
- , tcl, tk, xproto, libX11, git
+ , tcl, tk, xproto, libX11, git, mpfr
  } :
 let
   realGcc = stdenv.gcc.gcc;
 in
 stdenv.mkDerivation rec {
   pname = "julia";
-  date = "20130205";
+  date = "20130611";
   name = "${pname}-git-${date}";
 
   grisu_ver = "1.1.1";
   dsfmt_ver = "2.2";
   openblas_ver = "v0.2.2";
   lapack_ver = "3.4.1";
-  arpack_ver = "3.1.2";
+  arpack_ver = "3.1.3";
   clp_ver = "1.14.5";
   lighttpd_ver = "1.4.29";
   patchelf_ver = "0.6";
@@ -36,9 +36,9 @@ stdenv.mkDerivation rec {
     sha256 = "19ffec70f9678f5c159feadc036ca47720681b782910fbaa95aa3867e7e86d8e";
   };
   arpack_src = fetchurl {
-    url = "http://forge.scilab.org/index.php/p/arpack-ng/downloads/497/get/";
-    name = "arpack-ng_${arpack_ver}.tar.gz";
-    sha256 = "1wk06bdjgap4hshx0lswzi7vxy2lrdx353y1k7yvm97mpsjvsf4k";
+    url = "http://forge.scilab.org/index.php/p/arpack-ng/downloads/607/get/";
+    name = "arpack-ng-${arpack_ver}.tar.gz";
+    sha256 = "039w7j3dr1xy35a3hp92zg2g92gmjq6xsv0g4awlb4cffy09nr2d";
   };
   lapack_src = fetchurl {
     url = "http://www.netlib.org/lapack/lapack-${lapack_ver}.tgz";
@@ -65,17 +65,17 @@ stdenv.mkDerivation rec {
 
   src = fetchgit {
     url = "git://github.com/JuliaLang/julia.git";
-    rev = "efc696bf74eec7605b4da19f6f1605ba99959ed3";
-    sha256 = "19if7aj3mrp84dg9g2d3zbhasrq0nz28djl9a01m0y4y9bfymp7s";
+    rev = "60cc4e44bf415dcda90f2bbe22300f842fe44098";
+    sha256 = "018s0zyvdkxjldbvcdv40q3v2gcjznyyql5pv3zhhy1iq11jddfz";
   };
 
   buildInputs = [ gfortran perl m4 gmp pcre llvm readline zlib
     fftw fftwSinglePrec libunwind suitesparse glpk ncurses libunistring patchelf
-    openblas liblapack tcl tk xproto libX11 git
+    openblas liblapack tcl tk xproto libX11 git mpfr
     ];
 
   configurePhase = ''
-    for i in GMP LLVM PCRE LAPACK OPENBLAS BLAS READLINE FFTW LIBUNWIND SUITESPARSE GLPK LIGHTTPD ZLIB; 
+    for i in GMP LLVM PCRE LAPACK OPENBLAS BLAS READLINE FFTW LIBUNWIND SUITESPARSE GLPK LIGHTTPD ZLIB MPFR; 
     do 
       makeFlags="$makeFlags USE_SYSTEM_$i=1 "
     done
@@ -90,7 +90,7 @@ stdenv.mkDerivation rec {
     copy_kill_hash "${dsfmt_src}" deps/random
 
     ${if realGcc ==null then "" else 
-    ''export NIX_LDFLAGS="$NIX_LDFLAGS -L${realGcc}/lib -L${realGcc}/lib64 -lpcre -llapack -lm -lfftw3f -lfftw3 -lglpk -lunistring -lz "''}
+    ''export NIX_LDFLAGS="$NIX_LDFLAGS -L${realGcc}/lib -L${realGcc}/lib64 -lpcre -llapack -lm -lfftw3f -lfftw3 -lglpk -lunistring -lz -lgmp -lmpfr"''}
     export NIX_CFLAGS_COMPILE="$NIX_CFLAGS_COMPILE -fPIC "
 
     export LDFLAGS="-L${suitesparse}/lib -L$out/lib/julia -Wl,-rpath,$out/lib/julia"
@@ -110,6 +110,21 @@ stdenv.mkDerivation rec {
 
   preBuild = ''
     mkdir -p usr/lib
+    
+    echo "$out"
+    mkdir -p "$out/lib"
+    (
+    cd "$(mktemp -d)"
+    for i in "${suitesparse}"/lib/lib*.a; do
+      ar -x $i
+    done
+    gcc *.o --shared -o "$out/lib/libsuitesparse.so"
+    )
+    cp "$out/lib/libsuitesparse.so" usr/lib
+    for i in umfpack cholmod amd camd colamd spqr; do
+      ln -s libsuitesparse.so "$out"/lib/lib$i.so;
+      ln -s libsuitesparse.so "usr"/lib/lib$i.so;
+    done
   '';
 
   preInstall = ''

pkgs/development/libraries/mpfr/3.1.2.nix

@@ -0,0 +1,51 @@
+
+{stdenv, fetchurl, gmp}:
+
+stdenv.mkDerivation (rec {
+  name = "mpfr-3.1.2";
+
+  src = fetchurl {
+    url = "mirror://gnu/mpfr/${name}.tar.bz2";
+    sha256 = "0sqvpfkzamxdr87anzakf9dhkfh15lfmm5bsqajk02h1mxh3zivr";
+  };
+
+  buildInputs = [ gmp ];
+
+  doCheck = true;
+
+  enableParallelBuilding = true;
+
+  meta = {
+    homepage = http://www.mpfr.org/;
+    description = "GNU MPFR, a library for multiple-precision floating-point arithmetic";
+
+    longDescription = ''
+      The GNU MPFR library is a C library for multiple-precision
+      floating-point computations with correct rounding.  MPFR is
+      based on the GMP multiple-precision library.
+
+      The main goal of MPFR is to provide a library for
+      multiple-precision floating-point computation which is both
+      efficient and has a well-defined semantics.  It copies the good
+      ideas from the ANSI/IEEE-754 standard for double-precision
+      floating-point arithmetic (53-bit mantissa).
+    '';
+
+    license = "LGPLv2+";
+
+    maintainers = [ stdenv.lib.maintainers.ludo ];
+    platforms = stdenv.lib.platforms.all;
+  };
+}
+
+//
+
+(stdenv.lib.optionalAttrs stdenv.isFreeBSD {
+   /* Work around a FreeBSD bug that otherwise leads to segfaults in
+      the test suite:
+        http://hydra.bordeaux.inria.fr/build/34862
+        http://websympa.loria.fr/wwsympa/arc/mpfr/2011-10/msg00015.html
+        http://www.freebsd.org/cgi/query-pr.cgi?pr=161344
+    */
+   configureFlags = [ "--disable-thread-safe" ];
+ }))

pkgs/development/libraries/suitesparse/default.nix

@@ -1,10 +1,10 @@
 { stdenv, fetchurl, blas, liblapack, gfortran } :
 stdenv.mkDerivation rec {
-  version = "4.0.0";
+  version = "4.2.0";
   name = "suitesparse-${version}";
   src = fetchurl {
     url = "http://www.cise.ufl.edu/research/sparse/SuiteSparse/SuiteSparse-${version}.tar.gz" ;
-    sha256 = "1nvbdw10wa6654k8sa2vhr607q6fflcywyji5xd767cqpwag4v5j";  			
+    sha256 = "0i0ivsc5sr3jdz6nqq4wz5lwxc8rpnkqgddyhqqgfhwzgrcqh9v6";  			
   };
   buildInputs = [blas liblapack gfortran] ;
   patches = [./disable-metis.patch];

pkgs/top-level/all-packages.nix

@@ -2625,6 +2625,7 @@ let
 
   julia = callPackage ../development/compilers/julia {
     liblapack = liblapack.override {shared = true;};
+    mpfr = mpfr_3_1_2;
     fftw = fftw.override {pthreads = true;};
     fftwSinglePrec = fftwSinglePrec.override {pthreads = true;};
   };
@@ -3998,6 +3999,7 @@ let
 
   #GMP ex-satellite, so better keep it near gmp
   mpfr = callPackage ../development/libraries/mpfr { };
+  mpfr_3_1_2 = callPackage ../development/libraries/mpfr/3.1.2.nix { };
 
   gst_all = {
     inherit (pkgs) gstreamer gnonlin gst_python qt_gstreamer;