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Merge pull request #16505 from mimadrid/init/igv-2.3.77

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igv: init at 2.3.77
This commit is contained in:
Joachim Fasting 2016-06-26 20:20:06 +02:00 committed by GitHub
commit 5267296e20
2 changed files with 35 additions and 0 deletions
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33
pkgs/applications/science/biology/igv/default.nix Normal file
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@ -0,0 +1,33 @@
{ stdenv, fetchurl, unzip, jre }:
stdenv.mkDerivation rec {
name = "igv-${version}";
version = "2.3.77";
src = fetchurl {
url = "http://data.broadinstitute.org/igv/projects/downloads/IGV_${version}.zip";
sha256 = "9d8c622649f9f02026e92fa44006bb57e897baad4359c8708ca9cdbb71f94bb5";
};
buildInputs = [ unzip jre ];
installPhase = ''
mkdir -pv $out/{share,bin}
cp -Rv * $out/share/
sed -i "s#prefix=.*#prefix=$out/share#g" $out/share/igv.sh
sed -i 's#java#${jre}/bin/java#g' $out/share/igv.sh
ln -s $out/share/igv.sh $out/bin/igv
chmod +x $out/bin/igv
'';
meta = with stdenv.lib; {
homepage = "https://www.broadinstitute.org/igv/";
description = "A visualization tool for interactive exploration of genomic datasets";
license = licenses.lgpl21;
platforms = platforms.unix;
maintainers = [ maintainers.mimadrid ];
};
}

2
pkgs/top-level/all-packages.nix
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@ -16035,6 +16035,8 @@ in
htslib = callPackage ../development/libraries/science/biology/htslib { };
igv = callPackage ../applications/science/biology/igv { };
neuron = callPackage ../applications/science/biology/neuron { };
neuron-mpi = appendToName "mpi" (neuron.override {