Merge staging-next into staging

.editorconfig

@@ -76,10 +76,12 @@ trim_trailing_whitespace = unset
 
 [pkgs/build-support/dotnetenv/Wrapper/**]
 end_of_line = unset
+indent_style = unset
 insert_final_newline = unset
 trim_trailing_whitespace = unset
 
 [pkgs/build-support/upstream-updater/**]
+indent_style = unset
 trim_trailing_whitespace = unset
 
 [pkgs/development/compilers/elm/registry.dat]
@@ -96,6 +98,9 @@ trim_trailing_whitespace = unset
 [pkgs/development/node-packages/composition.nix]
 insert_final_newline = unset
 
+[pkgs/development/{perl-modules,ocaml-modules,tools/ocaml}/**]
+indent_style = unset
+
 [pkgs/servers/dict/wordnet_structures.py]
 trim_trailing_whitespace = unset
 

.github/workflows/editorconfig.yml

@@ -2,6 +2,8 @@ name: "Checking EditorConfig"
 
 on:
   pull_request:
+    branches-ignore:
+      - 'release-**'
 
 jobs:
   tests:
@@ -23,5 +25,5 @@ jobs:
     - name: Checking EditorConfig
       if: env.GIT_DIFF
       run: |
-        ./bin/editorconfig-checker -disable-indentation \
+        ./bin/editorconfig-checker -disable-indent-size \
         ${{ env.GIT_DIFF }}

doc/stdenv/meta.xml

@@ -190,7 +190,7 @@ hello-2.3  A program that produces a familiar, friendly greeting
     <listitem>
      <para>
       A list of names and e-mail addresses of the maintainers of this Nix expression. If you would like to be a maintainer of a package, you may want to add yourself to <link
-    xlink:href="https://github.com/NixOS/nixpkgs/blob/master/maintainers/maintainer-list.nix"><filename>nixpkgs/maintainers/maintainer-list.nix</filename></link> and write something like <literal>[ stdenv.lib.maintainers.alice stdenv.lib.maintainers.bob ]</literal>.
+    xlink:href="https://github.com/NixOS/nixpkgs/blob/master/maintainers/maintainer-list.nix"><filename>nixpkgs/maintainers/maintainer-list.nix</filename></link>. There is no restriction to becoming a maintainer, just add each new maintainer to that list in a separate commit titled 'maintainers: add alice', and reference maintainers with <literal>maintainers = with lib.maintainers; [ alice bob ]</literal>.
      </para>
     </listitem>
    </varlistentry>

lib/strings.nix

@@ -561,7 +561,9 @@ rec {
        enableFeature false "shared"
        => "--disable-shared"
   */
-  enableFeature = enable: feat: "--${if enable then "enable" else "disable"}-${feat}";
+  enableFeature = enable: feat:
+    assert isString feat; # e.g. passing openssl instead of "openssl"
+    "--${if enable then "enable" else "disable"}-${feat}";
 
   /* Create an --{enable-<feat>=<value>,disable-<feat>} string that can be passed to
      standard GNU Autoconf scripts.
@@ -583,7 +585,9 @@ rec {
        withFeature false "shared"
        => "--without-shared"
   */
-  withFeature = with_: feat: "--${if with_ then "with" else "without"}-${feat}";
+  withFeature = with_: feat:
+    assert isString feat; # e.g. passing openssl instead of "openssl"
+    "--${if with_ then "with" else "without"}-${feat}";
 
   /* Create an --{with-<feat>=<value>,without-<feat>} string that can be passed to
      standard GNU Autoconf scripts.

maintainers/maintainer-list.nix

@@ -1272,6 +1272,12 @@
     githubId = 7214361;
     name = "Roman Gerasimenko";
   };
+  bburdette = {
+    email = "bburdette@protonmail.com";
+    github = "bburdette";
+    githubId = 157330;
+    name = "Ben Burdette";
+  };
   bzizou = {
     email = "Bruno@bzizou.net";
     github = "bzizou";

nixos/doc/manual/release-notes/rl-2103.xml

@@ -158,6 +158,11 @@
      <link xlink:href="http://www.mutt.org/relnotes/2.0/">release notes for Mutt 2.0</link>.
     </para>
    </listitem>
+   <listitem>
+    <para>
+      <literal>vim</literal> switched to Python 3, dropping all Python 2 support.
+    </para>
+   </listitem>
   </itemizedlist>
  </section>
 

nixos/modules/module-list.nix

@@ -542,6 +542,7 @@
   ./services/monitoring/kapacitor.nix
   ./services/monitoring/loki.nix
   ./services/monitoring/longview.nix
+  ./services/monitoring/mackerel-agent.nix
   ./services/monitoring/monit.nix
   ./services/monitoring/munin.nix
   ./services/monitoring/nagios.nix

nixos/modules/programs/ssmtp.nix

@@ -142,6 +142,13 @@ in
 
   config = mkIf cfg.enable {
 
+    assertions = [
+      {
+        assertion = cfg.useSTARTTLS -> cfg.useTLS;
+        message = "services.ssmtp.useSTARTTLS has no effect without services.ssmtp.useTLS";
+      }
+    ];
+
     services.ssmtp.settings = mkMerge [
       ({
         MailHub = cfg.hostName;

nixos/modules/services/logging/promtail.nix

@@ -6,25 +6,14 @@ let
     echo '${builtins.toJSON conf}' | ${pkgs.buildPackages.jq}/bin/jq 'del(._module)' > $out
   '';
 
+  allowSystemdJournal = cfg.configuration ? scrape_configs && lib.any (v: v ? journal) cfg.configuration.scrape_configs;
 in {
   options.services.promtail = with types; {
     enable = mkEnableOption "the Promtail ingresser";
 
+
     configuration = mkOption {
-      type = with lib.types; let
-        valueType = nullOr (oneOf [
-          bool
-          int
-          float
-          str
-          (lazyAttrsOf valueType)
-          (listOf valueType)
-        ]) // {
-          description = "JSON value";
-          emptyValue.value = {};
-          deprecationMessage = null;
-        };
-      in valueType;
+      type = (pkgs.formats.json {}).type;
       description = ''
         Specify the configuration for Promtail in Nix.
       '';
@@ -80,6 +69,8 @@ in {
         RestrictRealtime = true;
         MemoryDenyWriteExecute = true;
         PrivateUsers = true;
+
+        SupplementaryGroups = lib.optional (allowSystemdJournal) "systemd-journal";
       } // (optionalAttrs (!pkgs.stdenv.isAarch64) { # FIXME: figure out why this breaks on aarch64
         SystemCallFilter = "@system-service";
       });

nixos/modules/services/misc/cfdyndns.nix

@@ -6,6 +6,12 @@ let
   cfg = config.services.cfdyndns;
 in
 {
+  imports = [
+    (mkRemovedOptionModule
+      [ "services" "cfdyndns" "apikey" ]
+      "Use services.cfdyndns.apikeyFile instead.")
+  ];
+
   options = {
     services.cfdyndns = {
       enable = mkEnableOption "Cloudflare Dynamic DNS Client";
@@ -17,10 +23,12 @@ in
         '';
       };
 
-      apikey = mkOption {
-        type = types.str;
+      apikeyFile = mkOption {
+        default = null;
+        type = types.nullOr types.str;
         description = ''
-          The API Key to use to authenticate to CloudFlare.
+          The path to a file containing the API Key
+          used to authenticate with CloudFlare.
         '';
       };
 
@@ -45,13 +53,17 @@ in
         Type = "simple";
         User = config.ids.uids.cfdyndns;
         Group = config.ids.gids.cfdyndns;
-        ExecStart = "/bin/sh -c '${pkgs.cfdyndns}/bin/cfdyndns'";
       };
       environment = {
         CLOUDFLARE_EMAIL="${cfg.email}";
-        CLOUDFLARE_APIKEY="${cfg.apikey}";
         CLOUDFLARE_RECORDS="${concatStringsSep "," cfg.records}";
       };
+      script = ''
+        ${optionalString (cfg.apikeyFile != null) ''
+          export CLOUDFLARE_APIKEY="$(cat ${escapeShellArg cfg.apikeyFile})"
+        ''}
+        ${pkgs.cfdyndns}/bin/cfdyndns
+      '';
     };
 
     users.users = {

nixos/modules/services/monitoring/loki.nix

@@ -39,7 +39,7 @@ in {
     };
 
     configuration = mkOption {
-      type = types.attrs;
+      type = (pkgs.formats.json {}).type;
       default = {};
       description = ''
         Specify the configuration for Loki in Nix.
@@ -78,6 +78,8 @@ in {
       '';
     }];
 
+    environment.systemPackages = [ pkgs.grafana-loki ]; # logcli
+
     users.groups.${cfg.group} = { };
     users.users.${cfg.user} = {
       description = "Loki Service User";

nixos/modules/services/monitoring/mackerel-agent.nix

@@ -0,0 +1,111 @@
+{ config, lib, pkgs, ... }:
+
+with lib;
+
+let
+  cfg = config.services.mackerel-agent;
+  settingsFmt = pkgs.formats.toml {};
+in {
+  options.services.mackerel-agent = {
+    enable = mkEnableOption "mackerel.io agent";
+
+    # the upstream package runs as root, but doesn't seem to be strictly
+    # necessary for basic functionality
+    runAsRoot = mkEnableOption "Whether to run as root.";
+
+    autoRetirement = mkEnableOption ''
+      Whether to automatically retire the host upon OS shutdown.
+    '';
+
+    apiKeyFile = mkOption {
+      type = types.path;
+      default = "";
+      example = "/run/keys/mackerel-api-key";
+      description = ''
+        Path to file containing the Mackerel API key. The file should contain a
+        single line of the following form:
+
+        <literallayout>apikey = "EXAMPLE_API_KEY"</literallayout>
+      '';
+    };
+
+    settings = mkOption {
+      description = ''
+        Options for mackerel-agent.conf.
+
+        Documentation:
+        <link xlink:href="https://mackerel.io/docs/entry/spec/agent"/>
+      '';
+
+      default = {};
+      example = {
+        verbose = false;
+        silent = false;
+      };
+
+      type = types.submodule {
+        freeformType = settingsFmt.type;
+
+        options.host_status = {
+          on_start = mkOption {
+            type = types.enum [ "working" "standby" "maintenance" "poweroff" ];
+            description = "Host status after agent startup.";
+            default = "working";
+          };
+          on_stop = mkOption {
+            type = types.enum [ "working" "standby" "maintenance" "poweroff" ];
+            description = "Host status after agent shutdown.";
+            default = "poweroff";
+          };
+        };
+
+        options.diagnostic =
+          mkEnableOption "Collect memory usage for the agent itself";
+      };
+    };
+  };
+
+  config = mkIf cfg.enable {
+    environment.systemPackages = with pkgs; [ mackerel-agent ];
+
+    environment.etc = {
+      "mackerel-agent/mackerel-agent.conf".source =
+        settingsFmt.generate "mackerel-agent.conf" cfg.settings;
+      "mackerel-agent/conf.d/api-key.conf".source = cfg.apiKeyFile;
+    };
+
+    services.mackerel-agent.settings = {
+      root = mkDefault "/var/lib/mackerel-agent";
+      pidfile = mkDefault "/run/mackerel-agent/mackerel-agent.pid";
+
+      # conf.d stores the symlink to cfg.apiKeyFile
+      include = mkDefault "/etc/mackerel-agent/conf.d/*.conf";
+    };
+
+    # upstream service file in https://git.io/JUt4Q
+    systemd.services.mackerel-agent = {
+      description = "mackerel.io agent";
+      after = [ "network-online.target" "nss-lookup.target" ];
+      wantedBy = [ "multi-user.target" ];
+      environment = {
+        MACKEREL_PLUGIN_WORKDIR = mkDefault "%C/mackerel-agent";
+      };
+      serviceConfig = {
+        DynamicUser = !cfg.runAsRoot;
+        PrivateTmp = mkDefault true;
+        CacheDirectory = "mackerel-agent";
+        ConfigurationDirectory = "mackerel-agent";
+        RuntimeDirectory = "mackerel-agent";
+        StateDirectory = "mackerel-agent";
+        ExecStart = "${pkgs.mackerel-agent}/bin/mackerel-agent supervise";
+        ExecStopPost = mkIf cfg.autoRetirement "${pkg.mackerel-agent}/bin/mackerel-agent retire -force";
+        ExecReload = "${pkgs.coreutils}/bin/kill -HUP $MAINPID";
+        LimitNOFILE = mkDefault 65536;
+        LimitNPROC = mkDefault 65536;
+      };
+      restartTriggers = [
+        config.environment.etc."mackerel-agent/mackerel-agent.conf".source
+      ];
+    };
+  };
+}

nixos/modules/services/x11/desktop-managers/plasma5.nix

@@ -367,7 +367,7 @@ in
       security.pam.services.sddm.enableKwallet = true;
 
       xdg.portal.enable = true;
-      xdg.portal.extraPortals = [ pkgs.xdg-desktop-portal-kde ];
+      xdg.portal.extraPortals = [ plasma5.xdg-desktop-portal-kde ];
 
       # Update the start menu for each user that is currently logged in
       system.userActivationScripts.plasmaSetup = activationScript;

nixos/modules/virtualisation/qemu-vm.nix

@@ -744,16 +744,19 @@ in
         (isEnabled "VIRTIO_PCI")
         (isEnabled "VIRTIO_NET")
         (isEnabled "EXT4_FS")
+        (isEnabled "NET_9P_VIRTIO")
+        (isEnabled "9P_FS")
         (isYes "BLK_DEV")
         (isYes "PCI")
-        (isYes "EXPERIMENTAL")
         (isYes "NETDEVICES")
         (isYes "NET_CORE")
         (isYes "INET")
         (isYes "NETWORK_FILESYSTEMS")
-      ] ++ optional (!cfg.graphics) [
+      ] ++ optionals (!cfg.graphics) [
         (isYes "SERIAL_8250_CONSOLE")
         (isYes "SERIAL_8250")
+      ] ++ optionals (cfg.writableStore) [
+        (isEnabled "OVERLAY_FS")
       ];
 
   };

nixos/tests/all-tests.nix

@@ -315,6 +315,7 @@ in
   samba = handleTest ./samba.nix {};
   sanoid = handleTest ./sanoid.nix {};
   sbt = handleTest ./sbt.nix {};
+  sbt-extras = handleTest ./sbt-extras.nix {};
   scala = handleTest ./scala.nix {};
   sddm = handleTest ./sddm.nix {};
   service-runner = handleTest ./service-runner.nix {};

nixos/tests/loki.nix

@@ -45,6 +45,8 @@ import ./make-test-python.nix ({ lib, pkgs, ... }:
     machine.wait_for_open_port(3100)
     machine.wait_for_open_port(9080)
     machine.succeed("echo 'Loki Ingestion Test' > /var/log/testlog")
+    # should not have access to journal unless specified
+    machine.fail("systemctl show --property=SupplementaryGroups promtail | grep -q systemd-journal")
     machine.wait_until_succeeds(
         "${pkgs.grafana-loki}/bin/logcli --addr='http://localhost:3100' query --no-labels '{job=\"varlogs\",filename=\"/var/log/testlog\"}' | grep -q 'Loki Ingestion Test'"
     )

nixos/tests/sbt-extras.nix

@@ -0,0 +1,16 @@
+import ./make-test-python.nix ({ pkgs, ...} : {
+  name = "sbt-extras";
+  meta = with pkgs.stdenv.lib.maintainers; {
+    maintainers = [ nequissimus ];
+  };
+
+  machine = { pkgs, ... }:
+    {
+      environment.systemPackages = [ pkgs.sbt-extras ];
+    };
+
+  testScript =
+    ''
+      machine.succeed("(sbt -h)")
+    '';
+})

pkgs/applications/audio/ft2-clone/default.nix

@@ -9,13 +9,13 @@
 
 stdenv.mkDerivation rec {
   pname = "ft2-clone";
-  version = "1.37";
+  version = "1.39";
 
   src = fetchFromGitHub {
     owner = "8bitbubsy";
     repo = "ft2-clone";
     rev = "v${version}";
-    sha256 = "1lhpzd46mpr3bq13qhd0bq724db5fhc8jplfb684c2q7sc4v92nk";
+    sha256 = "0vc7gni24q649b53flz7rlgnc5xl2dqdklgwc2brj380a5s7g6m7";
   };
 
   nativeBuildInputs = [ cmake ];

pkgs/applications/audio/qmmp/default.nix

@@ -29,11 +29,11 @@
 # handle that.
 
 mkDerivation rec {
-  name = "qmmp-1.4.1";
+  name = "qmmp-1.4.2";
 
   src = fetchurl {
     url = "http://qmmp.ylsoftware.com/files/${name}.tar.bz2";
-    sha256 = "0p18r2ri75vbyjzfa7bcl1dm372m6jvn9zj2p5ia2rh1g77fbm9a";
+    sha256 = "1kvzw0n90crg3dgy8834qrjv0zb3ia5cny7virax9ax73y653jfa";
   };
 
   nativeBuildInputs = [ cmake pkgconfig ];

pkgs/applications/audio/qtractor/default.nix

@@ -5,11 +5,11 @@
 
 stdenv.mkDerivation rec {
   pname = "qtractor";
-  version = "0.9.15";
+  version = "0.9.18";
 
   src = fetchurl {
     url = "mirror://sourceforge/${pname}/${pname}-${version}.tar.gz";
-    sha256 = "0k7a6llwrzs07flr9mvzvay9ygc2x64syg8npyabsw5a4d85fwsx";
+    sha256 = "121vmygdzp37p6f93f8dbbg2m2r55j7amyiapzkqgypgn4vfdbwr";
   };
 
   nativeBuildInputs = [

pkgs/applications/blockchains/ergo/default.nix

@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   pname = "ergo";
-  version = "3.3.5";
+  version = "3.3.6";
 
   src = fetchurl {
     url = "https://github.com/ergoplatform/ergo/releases/download/v${version}/ergo-${version}.jar";
-    sha256 = "0bxzpwwb42bppqli3zggx3lah7g6kwmy6k6k6dinypj6x0bafqcg";
+    sha256 = "1zi559ixjxxsrpvvjbxa1d0g96px3h9amjvy149sfhp7b8w5hhk3";
   };
 
   nativeBuildInputs = [ makeWrapper ];

pkgs/applications/blockchains/pivx.nix

@@ -52,7 +52,7 @@ stdenv.mkDerivation rec {
       Zero Knowledge cryptography proofs for industry-leading transaction anonymity.
     '';
     license = licenses.mit;
-    homepage = "https://www.dash.org";
+    homepage = "https://pivx.org";
     maintainers = with maintainers; [ wucke13 ];
     platforms = platforms.unix;
   };

pkgs/applications/editors/vim/configurable.nix

@@ -1,5 +1,5 @@
 { source ? "default", callPackage, stdenv, ncurses, pkgconfig, gettext
-, writeText, config, glib, gtk2-x11, gtk3-x11, lua, python, perl, tcl, ruby
+, writeText, config, glib, gtk2-x11, gtk3-x11, lua, python3, perl, tcl, ruby
 , libX11, libXext, libSM, libXpm, libXt, libXaw, libXau, libXmu
 , libICE
 , vimPlugins
@@ -62,8 +62,6 @@ let
 
   common = callPackage ./common.nix {};
 
-  isPython3 = python.isPy3 or false;
-
 in stdenv.mkDerivation rec {
 
   pname = "vim_configurable";
@@ -106,9 +104,10 @@ in stdenv.mkDerivation rec {
     "--with-luajit"
   ]
   ++ stdenv.lib.optionals pythonSupport [
-    "--enable-python${if isPython3 then "3" else ""}interp=yes"
-    "--with-python${if isPython3 then "3" else ""}-config-dir=${python}/lib"
-    "--disable-python${if (!isPython3) then "3" else ""}interp"
+    "--enable-python3interp=yes"
+    "--with-python3-config-dir=${python3}/lib"
+    # Disables Python 2
+    "--disable-pythoninterp"
   ]
   ++ stdenv.lib.optional nlsSupport          "--enable-nls"
   ++ stdenv.lib.optional perlSupport         "--enable-perlinterp"
@@ -134,7 +133,7 @@ in stdenv.mkDerivation rec {
     ++ stdenv.lib.optional (guiSupport == "gtk3") gtk3-x11
     ++ stdenv.lib.optionals darwinSupport [ CoreServices CoreData Cocoa Foundation libobjc ]
     ++ stdenv.lib.optional luaSupport lua
-    ++ stdenv.lib.optional pythonSupport python
+    ++ stdenv.lib.optional pythonSupport python3
     ++ stdenv.lib.optional tclSupport tcl
     ++ stdenv.lib.optional rubySupport ruby;
 
@@ -163,7 +162,7 @@ in stdenv.mkDerivation rec {
 
     ln -sfn '${nixosRuntimepath}' "$out"/share/vim/vimrc
   '' + stdenv.lib.optionalString wrapPythonDrv ''
-    wrapProgram "$out/bin/vim" --prefix PATH : "${python}/bin"
+    wrapProgram "$out/bin/vim" --prefix PATH : "${python3}/bin"
   '' + stdenv.lib.optionalString (guiSupport == "gtk3") ''
 
     rewrap () {

pkgs/applications/graphics/gimp/plugins/default.nix

@@ -127,21 +127,22 @@ stdenv.lib.makeScope pkgs.newScope (self: with self; {
     name = "wavelet-sharpen-0.1.2";
     NIX_LDFLAGS = "-lm";
     src = fetchurl {
-      url = "http://registry.gimp.org/files/wavelet-sharpen-0.1.2.tar.gz";
+      url = "https://github.com/pixlsus/registry.gimp.org_static/raw/master/registry.gimp.org/files/wavelet-sharpen-0.1.2.tar.gz";
       sha256 = "0vql1k67i21g5ivaa1jh56rg427m0icrkpryrhg75nscpirfxxqw";
     };
     installPhase = "installPlugins src/wavelet-sharpen"; # TODO translations are not copied .. How to do this on nix?
   };
 
-  lqrPlugin = pluginDerivation {
+  lqrPlugin = pluginDerivation rec {
     /* menu:
        Layer/Liquid Rescale
     */
-    name = "lqr-plugin-0.6.1";
+    pname = "lqr-plugin";
+    version = "0.7.1";
     buildInputs = with pkgs; [ liblqr1 ];
     src = fetchurl {
-      url = "http://registry.gimp.org/files/gimp-lqr-plugin-0.6.1.tar.bz2";
-      sha256 = "00hklkpcimcbpjly4rjhfipaw096cpy768g9wixglwrsyqhil7l9";
+      url = "https://github.com/pixlsus/registry.gimp.org_static/raw/master/registry.gimp.org/files/gimp-lqr-plugin-${version}.tar.bz2";
+      sha256 = "sha256-YpgYPjHZkueJWS51QGmugXavGS+1x4o20St31qoRng4=";
     };
     #postInstall = ''mkdir -p $out/nix-support; echo "${liblqr1}" > "$out/nix-support/propagated-user-env-packages"'';
     installPhase = "installPlugins src/gimp-lqr-plugin";
@@ -196,35 +197,11 @@ stdenv.lib.makeScope pkgs.newScope (self: with self; {
   lightning = scriptDerivation {
     name = "Lightning";
     src = fetchurl {
-      url = "http://registry.gimp.org/files/Lightning.scm";
+      url = "https://github.com/pixlsus/registry.gimp.org_static/raw/master/registry.gimp.org/files/Lightning.scm";
       sha256 = "c14a8f4f709695ede3f77348728a25b3f3ded420da60f3f8de3944b7eae98a49";
     };
   };
 
-  /* space in name trouble ?
-
-  rainbowPlasma = scriptDerivation {
-    # http://registry.gimp.org/node/164
-    name = "rainbow-plasma";
-    src = fetchurl {
-      url = "http://registry.gimp.org/files/Rainbow Plasma.scm";
-      sha256 = "34308d4c9441f9e7bafa118af7ec9540f10ea0df75e812e2f3aa3fd7b5344c23";
-      name = "Rainbow-Plasma.scm"; # nix doesn't like spaces, does it?
-    };
-  };
-  */
-
-  /* doesn't seem to be working :-(
-  lightningGate = scriptDerivation {
-    # http://registry.gimp.org/node/153
-    name = "lightning-gate";
-    src = fetchurl {
-      url = "http://registry.gimp.org/files/LightningGate.scm";
-      sha256 = "181w1zi9a99kn2mfxjp43wkwcgw5vbb6iqjas7a9mhm8p04csys2";
-    };
-  };
-  */
-
 } // stdenv.lib.optionalAttrs (config.allowAliases or true) {
 
   resynthesizer2 = resynthesizer;

pkgs/applications/logging/humioctl/default.nix

@@ -1,8 +1,8 @@
 { buildGoModule, fetchFromGitHub, installShellFiles, stdenv }:
 
 let
-  humioCtlVersion = "0.27.0";
-  sha256 = "1h65g10dxcaw4wk0gyyyqj9f94xlphj30lp9w6rsfrk4pi3irzr4";
+  humioCtlVersion = "0.28.1";
+  sha256 = "0vy07nzafqhc14i179sfrzb795yh4pcyjj3py9fwq0nwnmxndby4";
   vendorSha256 = "0anvah2rpqvxgmdrdj73k3vbf8073nmsl3aykgvb1nraf3gz3bpk";
 in buildGoModule {
     name = "humioctl-${humioCtlVersion}";

pkgs/applications/misc/cheat/default.nix

@@ -3,13 +3,13 @@
 
 buildGoModule rec {
   pname = "cheat";
-  version = "4.1.0";
+  version = "4.1.1";
 
   src = fetchFromGitHub {
     owner = "cheat";
     repo = "cheat";
     rev = version;
-    sha256 = "0x6msbbqkwxs6msqacpqw4wlw7c9ilf8n6jqmx297ij6isswgksh";
+    sha256 = "0mraraby0s213ay2ahqsdvnyg76awbqllrkkx17mrx9z3ykba62d";
   };
 
   subPackages = [ "cmd/cheat" ];

pkgs/applications/misc/dstask/default.nix

@@ -2,13 +2,13 @@
 
 buildGoModule rec {
   pname = "dstask";
-  version = "0.23";
+  version = "0.23.1";
 
   src = fetchFromGitHub {
     owner = "naggie";
     repo = pname;
     rev = "v${version}";
-    sha256 = "15hr0ivwvm2lzpi8l5y5a3hya3i7r85pxna961m24gd4f8gs4cjl";
+    sha256 = "0rfz8jim0xqcwdb5n28942v9r3hbvhjrwdgzvbwc9f9psqg2s8d2";
   };
 
   # Set vendorSha256 to null because dstask vendors its dependencies (meaning

pkgs/applications/misc/gramps/default.nix

@@ -9,7 +9,7 @@
 let
   inherit (pythonPackages) python buildPythonApplication;
 in buildPythonApplication rec {
-  version = "5.0.1";
+  version = "5.1.3";
   pname = "gramps";
 
   nativeBuildInputs = [ wrapGAppsHook gettext ];
@@ -26,7 +26,7 @@ in buildPythonApplication rec {
     owner = "gramps-project";
     repo = "gramps";
     rev = "v${version}";
-    sha256 = "1jz1fbjj6byndvir7qxzhd2ryirrd5h2kwndxpp53xdc05z1i8g7";
+    sha256 = "109dwkswz2h2328xkqk2zj736d117s9pp7rz5cc1qg2vxn1lpm93";
   };
 
   pythonPath = with pythonPackages; [ bsddb3 PyICU pygobject3 pycairo ];

pkgs/applications/misc/hugo/default.nix

@@ -2,16 +2,16 @@
 
 buildGoModule rec {
   pname = "hugo";
-  version = "0.78.0";
+  version = "0.78.1";
 
   src = fetchFromGitHub {
     owner = "gohugoio";
     repo = pname;
     rev = "v${version}";
-    sha256 = "0la1c6yj9dq9rqxk6m8n8l4cabgzlk0r3was8mvgd80g3x3zn55v";
+    sha256 = "1rzv6az7fb1xvjxxq31rs42waqpwvks4h03lzjxv0kj8i43z116k";
   };
 
-  vendorSha256 = "09fvvs85rvvh0z4px2bj5908xf1mrcslkzsz09p0gy5i3zaqfnp9";
+  vendorSha256 = "06cw3qj57nhrxrbbxcyrqn53j6g11rd2q7bxw89fdn901mc26s03";
 
   doCheck = false;
 

pkgs/applications/misc/pwsafe/default.nix

@@ -1,5 +1,5 @@
 { stdenv, fetchFromGitHub, cmake, pkgconfig, zip, gettext, perl
-, wxGTK31, libXext, libXi, libXt, libXtst, xercesc
+, wxGTK30, libXext, libXi, libXt, libXtst, xercesc
 , qrencode, libuuid, libyubikey, yubikey-personalization
 , curl, openssl, file
 }:
@@ -19,7 +19,7 @@ stdenv.mkDerivation rec {
     cmake gettext perl pkgconfig zip
   ];
   buildInputs = [
-    libXext libXi libXt libXtst wxGTK31
+    libXext libXi libXt libXtst wxGTK30
     curl qrencode libuuid openssl xercesc
     libyubikey yubikey-personalization
     file

pkgs/applications/misc/spicetify-cli/default.nix

@@ -0,0 +1,32 @@
+{ lib, buildGoModule, fetchFromGitHub }:
+
+buildGoModule rec {
+  pname = "spicetify-cli";
+  version = "1.1.0";
+
+  src = fetchFromGitHub {
+    owner = "khanhas";
+    repo = pname;
+    rev = "v${version}";
+    sha256 = "08rnwj7ggh114n3mhhm8hb8fm1njgb4j6vba3hynp8x1c2ngidff";
+  };
+
+  vendorSha256 = "0k06c3jw5z8rw8nk4qf794kyfipylmz6x6l126a2snvwi0lmc601";
+
+  # used at runtime, but not installed by default
+  postInstall = ''
+    cp -r ${src}/jsHelper $out/bin/jsHelper
+  '';
+
+  doInstallCheck = true;
+  installCheckPhase = ''
+    $out/bin/spicetify-cli --help > /dev/null
+  '';
+
+  meta = with lib; {
+    description = "Command-line tool to customize Spotify client";
+    homepage = "https://github.com/khanhas/spicetify-cli/";
+    license = licenses.gpl3Plus;
+    maintainers = with maintainers; [ jonringer ];
+  };
+}

pkgs/applications/networking/browsers/amfora/default.nix

@@ -2,16 +2,16 @@
 
 buildGoModule rec {
   pname = "amfora";
-  version = "1.5.0";
+  version = "1.6.0";
 
   src = fetchFromGitHub {
     owner = "makeworld-the-better-one";
     repo = "amfora";
     rev = "v${version}";
-    sha256 = "011h5xzwiafh3fdp9wil8n618p45ph9swa66lw6s82ijpiizz79s";
+    sha256 = "1f5r12hmdgj26p4ss5pcpfcvqlcn19fr9xvvvk2izckcr48p4fy7";
   };
 
-  vendorSha256 = "10f3bh3r3jc1185r8r1ihg8rprdpl8qwg5b6wqwsda96ydkbpi2b";
+  vendorSha256 = "0mkk7xxfxxp1w9890mkmag11mzxhy2zmh8v1macpyp1zmzgs21f8";
 
   postInstall = ''
     sed -i "s:amfora:$out/bin/amfora:" amfora.desktop

pkgs/applications/networking/cluster/argo/default.nix

@@ -19,13 +19,13 @@ let
 in
 buildGoModule rec {
   pname = "argo";
-  version = "2.11.6";
+  version = "2.11.7";
 
   src = fetchFromGitHub {
     owner = "argoproj";
     repo = "argo";
     rev = "v${version}";
-    sha256 = "1vlz1f4hyzgz1x9xgzlmpnbjba8xyhpx9ybia0pwilfg7mwfq92r";
+    sha256 = "1i7qgghnb39bibnk07f47k64qpkb1k8mi3bbfnx6mxl0jlq335af";
   };
 
   vendorSha256 = "1ca0ssvbi4vrsn9ljc783hnh9bmf5p8nr1lz5wm8g3gbrrrf1ray";

pkgs/applications/networking/cluster/helmfile/default.nix

@@ -2,16 +2,16 @@
 
 buildGoModule rec {
   pname = "helmfile";
-  version = "0.132.1";
+  version = "0.134.0";
 
   src = fetchFromGitHub {
     owner = "roboll";
     repo = "helmfile";
     rev = "v${version}";
-    sha256 = "03i9pl3iwqk5az73qm9rxdq8c5nd9l4w3c28yk55bfgpwpnxcwjc";
+    sha256 = "0s64l3dj5ydal7rfyg1avckb2ri7a34y2x7rhbplam8lk0vdzx03";
   };
 
-  vendorSha256 = "0r4p4nwhmxg06qyf86gd2g61l4r1mlpblh4vhsc1shbz9iigykzi";
+  vendorSha256 = "1p5m5v5lpdyzywq2ybsa9zkygixdkaifn2szxj7v8x162bzf16r5";
 
   doCheck = false;
 

pkgs/applications/networking/cluster/helmsman/default.nix

@@ -2,13 +2,13 @@
 
 buildGoModule rec {
   pname = "helmsman";
-  version = "3.4.6";
+  version = "3.5.1";
 
   src = fetchFromGitHub {
     owner = "Praqma";
     repo = "helmsman";
     rev = "v${version}";
-    sha256 = "018bkl6q6q8njv9qy87affs0g6c716vmhcqv2czv8qz454hn7i5h";
+    sha256 = "0vng0ra8bjxmfq6xvdxn72f5bcjrv8i72dams80lf0mq3l7wjl7c";
   };
 
   vendorSha256 = "05vnysr5r3hbayss1pyifgp989kjw81h95iack8ady62k6ys5njl";

pkgs/applications/networking/cluster/kube3d/default.nix

@@ -2,7 +2,7 @@
 
 buildGoModule rec {
   pname = "kube3d";
-  version = "3.1.5";
+  version = "3.2.0";
   k3sVersion = "1.18.9-k3s1";
 
   excludedPackages = ''tools'';
@@ -11,7 +11,7 @@ buildGoModule rec {
     owner  = "rancher";
     repo   = "k3d";
     rev    = "v${version}";
-    sha256 = "0aspkar9im323d8117k48fvh1yylyspi2p2l2f5rdg1ilpa6hm53";
+    sha256 = "0jy0l8rvmwi0qznnvv97v50lfkpc2bwjmbnq4pxnmf9ih970wjwh";
   };
 
   buildFlagsArray = ''
@@ -23,12 +23,11 @@ buildGoModule rec {
 
   nativeBuildInputs = [ installShellFiles ];
 
-  # TODO: Move to enhanced installShellCompletion when in master: PR #83630
   postInstall = ''
-    $out/bin/k3d completion bash > k3d.bash
-    $out/bin/k3d completion fish > k3d.fish
-    $out/bin/k3d completion zsh  > _k3d
-    installShellCompletion k3d.{bash,fish} --zsh _k3d
+    installShellCompletion --cmd k3d \
+      --bash <($out/bin/k3d completion bash) \
+      --fish <($out/bin/k3d completion fish) \
+      --zsh <($out/bin/k3d completion zsh)
   '';
 
   vendorSha256 = null;

pkgs/applications/networking/cluster/terraform-providers/default.nix

@@ -149,16 +149,6 @@ let
       '';
     });
 
-    # provider was moved to the `vultr` organization, but kept the old references:
-    # https://github.com/vultr/terraform-provider-vultr/pull/67
-    # this override should be removed as soon as new version (>1.4.1) is released.
-    vultr = automated-providers.vultr.overrideAttrs (attrs: {
-      prePatch = attrs.prePatch or "" + ''
-        substituteInPlace go.mod --replace terraform-providers/terraform-provider-vultr vultr/terraform-provider-vultr
-        substituteInPlace main.go --replace terraform-providers/terraform-provider-vultr vultr/terraform-provider-vultr
-      '';
-    });
-
     # Packages that don't fit the default model
     ansible = callPackage ./ansible {};
     cloudfoundry = callPackage ./cloudfoundry {};

pkgs/applications/networking/cluster/terraform-providers/providers.json

@@ -1017,9 +1017,9 @@
   "vultr": {
     "owner": "vultr",
     "repo": "terraform-provider-vultr",
-    "rev": "v1.4.1",
-    "sha256": "1jx9p4bwpa5zxig6gfk4akfsnbivvyhwcw8id2ch2ga9a67pwald",
-    "version": "1.4.1"
+    "rev": "v1.5.0",
+    "sha256": "04qy366ignn53bbdj9s3032qr1x7h84q36qzl5ywydlw2va0qbsd",
+    "version": "1.5.0"
   },
   "wavefront": {
     "owner": "terraform-providers",

pkgs/applications/networking/mailreaders/thunderbird-bin/release_sources.nix

@@ -1,665 +1,665 @@
 {
-  version = "78.4.1";
+  version = "78.4.2";
   sources = [
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.1/linux-x86_64/af/thunderbird-78.4.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.2/linux-x86_64/af/thunderbird-78.4.2.tar.bz2";
       locale = "af";
       arch = "linux-x86_64";
-      sha256 = "36268a7fe6ec5a0ea0243f83ffbd73204d5c4ef257b0c8857a50428304b2d4c2";
+      sha256 = "8b1c2e12bd1de45251131d9fe444b06681577cafc019219dac4aa13b3abf989b";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.1/linux-x86_64/ar/thunderbird-78.4.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.2/linux-x86_64/ar/thunderbird-78.4.2.tar.bz2";
       locale = "ar";
       arch = "linux-x86_64";
-      sha256 = "831e70f807f05ce2f82bb11db35d05ed80dac53ad00c12ff6e191a627d0d42d0";
+      sha256 = "708ce9ae434ae78bd21d2c8a608a732d6ebdc88c2cc3c91c748d2b6a4eab24bd";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.1/linux-x86_64/ast/thunderbird-78.4.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.2/linux-x86_64/ast/thunderbird-78.4.2.tar.bz2";
       locale = "ast";
       arch = "linux-x86_64";
-      sha256 = "e6efde72ce7aeeda5f7c6d7cc0f3a08265c44546a0f8fc84a2adbc11cc038601";
+      sha256 = "46aadaa73a4e214c016f05eb9e0dc0a3daa6a87fc72988c696bf243d475d0285";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.1/linux-x86_64/be/thunderbird-78.4.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.2/linux-x86_64/be/thunderbird-78.4.2.tar.bz2";
       locale = "be";
       arch = "linux-x86_64";
-      sha256 = "07fe33390caf37a96c000e0f5435d07711f7a95dbe04f85a222b17ae5a13f1bc";
+      sha256 = "06abeef2331df228ad303d9280d077ef4a74af8658c4ac0147ae59e181dfc42e";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.1/linux-x86_64/bg/thunderbird-78.4.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.2/linux-x86_64/bg/thunderbird-78.4.2.tar.bz2";
       locale = "bg";
       arch = "linux-x86_64";
-      sha256 = "d460e201cbe4a1d6548a52121a33c2aaa7cbbf0e126fa1c4e8a431423424fb9e";
+      sha256 = "3aa13c52a514f5331bf626f9e3138bfe995c6a223559a9fbd6d590858484d9c1";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.1/linux-x86_64/br/thunderbird-78.4.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.2/linux-x86_64/br/thunderbird-78.4.2.tar.bz2";
       locale = "br";
       arch = "linux-x86_64";
-      sha256 = "9e85928f1145391d9c3f238612b93e6344a2ad5e6179bf09502b1b69c8ad1b03";
+      sha256 = "1f2d9ee7090e96e3e5611011c9fef8389b514dda4edbf47e889019312df6ab5f";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.1/linux-x86_64/ca/thunderbird-78.4.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.2/linux-x86_64/ca/thunderbird-78.4.2.tar.bz2";
       locale = "ca";
       arch = "linux-x86_64";
-      sha256 = "1516236c252f22933adf23bfe93d73fa272a4574deb674aef6e1f35006a6cc50";
+      sha256 = "f48d5d02a04212ca14cd4c175102a0e45483299d8a4615ff96232431c4ffa4a5";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.1/linux-x86_64/cak/thunderbird-78.4.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.2/linux-x86_64/cak/thunderbird-78.4.2.tar.bz2";
       locale = "cak";
       arch = "linux-x86_64";
-      sha256 = "c46508321d32c468d067d86c04973ca345b09b0e983954eaa123d02778d61fbd";
+      sha256 = "28b541daeac6aa6274f4185f9471ce8b2a46e18fe55ae1e373246d9f23d78ec6";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.1/linux-x86_64/cs/thunderbird-78.4.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.2/linux-x86_64/cs/thunderbird-78.4.2.tar.bz2";
       locale = "cs";
       arch = "linux-x86_64";
-      sha256 = "227209429c07238f38d334e5ac8a5fd895a4c87f51b21b4376df89c50bb6a789";
+      sha256 = "d4f061ac86da0b6279b81b30c8949cca93aca5b2f90d0e5dafc5cdecc2868e05";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.1/linux-x86_64/cy/thunderbird-78.4.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.2/linux-x86_64/cy/thunderbird-78.4.2.tar.bz2";
       locale = "cy";
       arch = "linux-x86_64";
-      sha256 = "b272926205e5470df8aec8b22d6733e4f47993e76123fe81d4be26ad5a153062";
+      sha256 = "824c703a570ae23d8e7b86d93baabb193842ac36fbc9d4ec65ae686e3d540de1";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.1/linux-x86_64/da/thunderbird-78.4.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.2/linux-x86_64/da/thunderbird-78.4.2.tar.bz2";
       locale = "da";
       arch = "linux-x86_64";
-      sha256 = "13f9fe10c84d2b8d8d0215cb58a9852486741f5bc8c6979f0a701bef14a70f4f";
+      sha256 = "8dd27d2596346853e3fddab12ad0dabd700c5216310922e768faacb019b5b3d9";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.1/linux-x86_64/de/thunderbird-78.4.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.2/linux-x86_64/de/thunderbird-78.4.2.tar.bz2";
       locale = "de";
       arch = "linux-x86_64";
-      sha256 = "590f9a5a975544d2effedda942e3989a13be23b95f4e6707f9905fed3fc08214";
+      sha256 = "3920c60073ee3066fbe35a1d2c34ab03a7b7e2dfbbe22af97fa32814000f6942";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.1/linux-x86_64/dsb/thunderbird-78.4.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.2/linux-x86_64/dsb/thunderbird-78.4.2.tar.bz2";
       locale = "dsb";
       arch = "linux-x86_64";
-      sha256 = "5b572c847f9ec76b25c225652c23ecf8c56523ffc3071b437310f0d8f9049b05";
+      sha256 = "fd09bbf80996e3aaf12dba79c366c4cfff41a0db0cdf7f6ed4d9722fd2623ff1";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.1/linux-x86_64/el/thunderbird-78.4.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.2/linux-x86_64/el/thunderbird-78.4.2.tar.bz2";
       locale = "el";
       arch = "linux-x86_64";
-      sha256 = "7cad76ea5a07dce6bdd3db78485f83a998ff27037f8ca68f8617659a06910a05";
+      sha256 = "a9df959b2df9c381b9881fe3015e654ac82ca441a3cfc25036c1e658401bf810";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.1/linux-x86_64/en-CA/thunderbird-78.4.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.2/linux-x86_64/en-CA/thunderbird-78.4.2.tar.bz2";
       locale = "en-CA";
       arch = "linux-x86_64";
-      sha256 = "f261b38fbc8d83c20be63015a444644a95f7d8b6584fcfc193145abcc69a4164";
+      sha256 = "126e6fffa28b9c2a7eb7bb49254786fd0884aba62524dcf7d8352d6542903f77";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.1/linux-x86_64/en-GB/thunderbird-78.4.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.2/linux-x86_64/en-GB/thunderbird-78.4.2.tar.bz2";
       locale = "en-GB";
       arch = "linux-x86_64";
-      sha256 = "5c0c364b1408182c0cbae1c2d05041781e2e4f3a17fb1735d61196c9b647dba4";
+      sha256 = "099ef4c54072c6a4a134badd02a51255573e876c8b630c3b9eaecfde997f9e03";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.1/linux-x86_64/en-US/thunderbird-78.4.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.2/linux-x86_64/en-US/thunderbird-78.4.2.tar.bz2";
       locale = "en-US";
       arch = "linux-x86_64";
-      sha256 = "a152c3b8c6ad4ba3a92a8a1f909b99599d8c3ded62b57e9721fb333b47f6509d";
+      sha256 = "e6041bd8ad2a21f0a8f8d78fd395239f1f41e2948584770673aaa0f3a9978b3e";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.1/linux-x86_64/es-AR/thunderbird-78.4.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.2/linux-x86_64/es-AR/thunderbird-78.4.2.tar.bz2";
       locale = "es-AR";
       arch = "linux-x86_64";
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     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.1/linux-i686/th/thunderbird-78.4.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.2/linux-i686/th/thunderbird-78.4.2.tar.bz2";
       locale = "th";
       arch = "linux-i686";
-      sha256 = "13be237b698dc9b468af7a2b8ff062118421a7b798771f1db4f82bcb1098f83c";
+      sha256 = "00f883ed3d542d0bf3da3e744523cfd1b3405ae0b928dd83c42e55e5f1bab4e1";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.1/linux-i686/tr/thunderbird-78.4.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.2/linux-i686/tr/thunderbird-78.4.2.tar.bz2";
       locale = "tr";
       arch = "linux-i686";
-      sha256 = "c70d085f6ceed58e7ea55ab01d121627a55df2f5e961ef160f4965db941660b3";
+      sha256 = "ab69a35eebbd1cdef80b22a398c4d570c17e13a8a36e5399b892974d7ed29b10";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.1/linux-i686/uk/thunderbird-78.4.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.2/linux-i686/uk/thunderbird-78.4.2.tar.bz2";
       locale = "uk";
       arch = "linux-i686";
-      sha256 = "c1b7b0efe7af03a488c80020247e2d8038d6dffa313188083bb75c1bc09c35fc";
+      sha256 = "efbd5bf9552333d78c68191265b3ecccb2a59ae19f2bfe7a1d8b096a44c9fcdc";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.1/linux-i686/uz/thunderbird-78.4.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.2/linux-i686/uz/thunderbird-78.4.2.tar.bz2";
       locale = "uz";
       arch = "linux-i686";
-      sha256 = "f4b8d20603c5e1dcc72760623803fc4cb34fffffd7b394c1998b860b5e3bc129";
+      sha256 = "db90d47b59efeb5c847ecdf8b7438a4f99d0954283f1deda39a0ee08f54fdfd1";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.1/linux-i686/vi/thunderbird-78.4.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.2/linux-i686/vi/thunderbird-78.4.2.tar.bz2";
       locale = "vi";
       arch = "linux-i686";
-      sha256 = "6d9d7885ba742ae28766ed98e64aa59892ffb51ad67eb9bc47d5a3974b8a7f50";
+      sha256 = "1d616c682f04f7c0ec976d41eb71d3ac929eaa3199b4af749a80c906a3f2a212";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.1/linux-i686/zh-CN/thunderbird-78.4.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.2/linux-i686/zh-CN/thunderbird-78.4.2.tar.bz2";
       locale = "zh-CN";
       arch = "linux-i686";
-      sha256 = "e47c2e9b66c99c8ba02c60f739d31ea2d679cdc4d6f1f407257ef3372cabf364";
+      sha256 = "490e4e310606846836d93ca9704b7de11bf307b918933fd0187aa5d3795a82bf";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.1/linux-i686/zh-TW/thunderbird-78.4.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.2/linux-i686/zh-TW/thunderbird-78.4.2.tar.bz2";
       locale = "zh-TW";
       arch = "linux-i686";
-      sha256 = "1cbab249ae670a204e464a9082365967a74ce2533bdab60682c14fe65dafba16";
+      sha256 = "c62476ac43d302ad9895524f6f66350122edfdf393697111d5868cf25b996c1a";
     }
     ];
 }

pkgs/applications/networking/mailreaders/thunderbird/default.nix

@@ -70,13 +70,13 @@ assert waylandSupport -> gtk3Support == true;
 
 stdenv.mkDerivation rec {
   pname = "thunderbird";
-  version = "78.4.1";
+  version = "78.4.2";
 
   src = fetchurl {
     url =
       "mirror://mozilla/thunderbird/releases/${version}/source/thunderbird-${version}.source.tar.xz";
     sha512 =
-      "2mbb139xdi69bnvvg7zabwbw181xnz7y154viynmkwyh4iww0hcsvr88q246gnif8a7jns3pi4qgqxgzflyl6mzpsvfdrbjs5hylanx";
+      "1bd8z6fm2nky4p3qxc5jh9dca7v7g77i6kdn6p5dzzm4gyadqvk00bfa4nzglzi9nwwyld14r3ydjd6ms012yk07q4aqdsrf51b9k4y";
   };
 
   nativeBuildInputs = [

pkgs/applications/office/portfolio/default.nix

@@ -24,11 +24,11 @@ let
 in
 stdenv.mkDerivation rec {
   pname = "PortfolioPerformance";
-  version = "0.49.0";
+  version = "0.49.2";
 
   src = fetchurl {
     url = "https://github.com/buchen/portfolio/releases/download/${version}/PortfolioPerformance-${version}-linux.gtk.x86_64.tar.gz";
-    sha256 = "1b3dll6ljkj2wyiy3ns9cgxqgjjr60dfrqrbbwdbndqj4pzfvbyf";
+    sha256 = "0c2ixzwbc094wqc2lyrh3w1azswg6xz3wdh8l4lbkiw02s9czhhn";
   };
 
   nativeBuildInputs = [

pkgs/applications/office/timekeeper/default.nix

@@ -0,0 +1,44 @@
+{ stdenv
+, fetchFromGitHub
+, poco
+, pkg-config
+, gnome2
+, gtkmm2
+, lib
+}:
+
+stdenv.mkDerivation rec {
+  pname = "timekeeper";
+  version = "1.0";
+
+  src = fetchFromGitHub {
+    owner = "bburdette";
+    repo = "TimeKeeper";
+    rev = "v${version}";
+    fetchSubmodules = true;
+    sha256 = "03rvzkygnn7igcindbb5bcmfy0l83n0awkzprsnhlb6ndxax3k9w";
+  };
+
+  nativeBuildInputs = [
+    poco
+    pkg-config
+  ];
+
+  buildInputs = [
+    gtkmm2
+    gnome2.libglademm
+    gnome2.libglade
+  ];
+
+  installPhase = ''
+    install -Dm755 TimeKeeper/TimeKeeper $out/bin/timekeeper
+    '';
+
+  meta = with stdenv.lib; {
+    description = "Log hours worked and make reports";
+    homepage = "https://github.com/bburdette/TimeKeeper";
+    maintainers = with maintainers; [ bburdette ];
+    platforms = [ "x86_64-linux" ];
+    license = licenses.bsd3;
+  };
+}

pkgs/applications/science/math/qalculate-gtk/default.nix

@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   pname = "qalculate-gtk";
-  version = "3.13.0";
+  version = "3.14.0";
 
   src = fetchFromGitHub {
     owner = "qalculate";
     repo = "qalculate-gtk";
     rev = "v${version}";
-    sha256 = "0yrzvsii84r9d2i2hrs4f65wzv3yj24l9d9yqfv3j85881h8wkm2";
+    sha256 = "1pff3m5xnw9kai6n110j1grxzcf2r7pxi76jin1lxhm8q8gmnnz1";
   };
 
   hardeningDisable = [ "format" ];

pkgs/applications/version-management/git-and-tools/default.nix

@@ -198,7 +198,7 @@ let
   gitstatus = callPackage ./gitstatus { };
 
   gitui = callPackage ./gitui {
-    inherit (darwin.apple_sdk.frameworks) Security;
+    inherit (darwin.apple_sdk.frameworks) Security AppKit;
   };
 
   grv = callPackage ./grv { };

pkgs/applications/version-management/git-and-tools/gitui/default.nix

@@ -1,4 +1,4 @@
-{ stdenv, rustPlatform, fetchFromGitHub, libiconv, xorg, python3, Security }:
+{ stdenv, rustPlatform, fetchFromGitHub, libiconv, xorg, python3, Security, AppKit }:
 rustPlatform.buildRustPackage rec {
   pname = "gitui";
   version = "0.10.1";
@@ -15,7 +15,7 @@ rustPlatform.buildRustPackage rec {
   nativeBuildInputs = [ python3 ];
   buildInputs = [ ]
     ++ stdenv.lib.optional stdenv.isLinux xorg.libxcb
-    ++ stdenv.lib.optionals stdenv.isDarwin [ libiconv Security ];
+    ++ stdenv.lib.optionals stdenv.isDarwin [ libiconv Security AppKit ];
 
   meta = with stdenv.lib; {
     description = "Blazing fast terminal-ui for git written in rust";

pkgs/applications/version-management/gitlab-triage/Gemfile

@@ -0,0 +1,3 @@
+source 'https://rubygems.org' do
+  gem 'gitlab-triage'
+end

pkgs/applications/version-management/gitlab-triage/Gemfile.lock

@@ -0,0 +1,35 @@
+GEM
+  remote: https://rubygems.org/
+  specs:
+    activesupport (5.2.4.4)
+      concurrent-ruby (~> 1.0, >= 1.0.2)
+      i18n (>= 0.7, < 2)
+      minitest (~> 5.1)
+      tzinfo (~> 1.1)
+    concurrent-ruby (1.1.7)
+    gitlab-triage (1.13.0)
+      activesupport (~> 5.1)
+      httparty (~> 0.17)
+    httparty (0.18.1)
+      mime-types (~> 3.0)
+      multi_xml (>= 0.5.2)
+    i18n (1.8.5)
+      concurrent-ruby (~> 1.0)
+    mime-types (3.3.1)
+      mime-types-data (~> 3.2015)
+    mime-types-data (3.2020.0512)
+    minitest (5.14.2)
+    multi_xml (0.6.0)
+    thread_safe (0.3.6)
+    tzinfo (1.2.7)
+      thread_safe (~> 0.1)
+
+PLATFORMS
+  ruby
+  x86_64-linux
+
+DEPENDENCIES
+  gitlab-triage!
+
+BUNDLED WITH
+   2.1.4

pkgs/applications/version-management/gitlab-triage/default.nix

@@ -0,0 +1,14 @@
+{ lib, bundlerApp }:
+
+bundlerApp {
+  pname = "gitlab-triage";
+  gemdir = ./.;
+  exes = [ "gitlab-triage" ];
+
+  meta = with lib; {
+    description = "GitLab's issues and merge requests triage, automated!";
+    homepage = "https://gitlab.com/gitlab-org/gitlab-triage";
+    license = licenses.mit;
+    maintainers = with maintainers; [ SuperSandro2000 ];
+  };
+}

pkgs/applications/version-management/gitlab-triage/gemset.nix

@@ -0,0 +1,118 @@
+{
+  activesupport = {
+    dependencies = ["concurrent-ruby" "i18n" "minitest" "tzinfo"];
+    groups = ["default"];
+    platforms = [];
+    source = {
+      remotes = ["https://rubygems.org"];
+      sha256 = "0dpnk20s754fz6jfz9sp3ri49hn46ksw4hf6ycnlw7s3hsdxqgcd";
+      type = "gem";
+    };
+    version = "5.2.4.4";
+  };
+  concurrent-ruby = {
+    groups = ["default"];
+    platforms = [];
+    source = {
+      remotes = ["https://rubygems.org"];
+      sha256 = "1vnxrbhi7cq3p4y2v9iwd10v1c7l15is4var14hwnb2jip4fyjzz";
+      type = "gem";
+    };
+    version = "1.1.7";
+  };
+  gitlab-triage = {
+    dependencies = ["activesupport" "httparty"];
+    groups = ["default"];
+    platforms = [];
+    source = {
+      remotes = ["https://rubygems.org"];
+      sha256 = "11sas3h3n638gni1mysck1ahyakqnl8gg6g21pc3krs6jrg9qxj9";
+      type = "gem";
+    };
+    version = "1.13.0";
+  };
+  httparty = {
+    dependencies = ["mime-types" "multi_xml"];
+    groups = ["default"];
+    platforms = [];
+    source = {
+      remotes = ["https://rubygems.org"];
+      sha256 = "17gpnbf2a7xkvsy20jig3ljvx8hl5520rqm9pffj2jrliq1yi3w7";
+      type = "gem";
+    };
+    version = "0.18.1";
+  };
+  i18n = {
+    dependencies = ["concurrent-ruby"];
+    groups = ["default"];
+    platforms = [];
+    source = {
+      remotes = ["https://rubygems.org"];
+      sha256 = "153sx77p16vawrs4qpkv7qlzf9v5fks4g7xqcj1dwk40i6g7rfzk";
+      type = "gem";
+    };
+    version = "1.8.5";
+  };
+  mime-types = {
+    dependencies = ["mime-types-data"];
+    groups = ["default"];
+    platforms = [];
+    source = {
+      remotes = ["https://rubygems.org"];
+      sha256 = "1zj12l9qk62anvk9bjvandpa6vy4xslil15wl6wlivyf51z773vh";
+      type = "gem";
+    };
+    version = "3.3.1";
+  };
+  mime-types-data = {
+    groups = ["default"];
+    platforms = [];
+    source = {
+      remotes = ["https://rubygems.org"];
+      sha256 = "1z75svngyhsglx0y2f9rnil2j08f9ab54b3l95bpgz67zq2if753";
+      type = "gem";
+    };
+    version = "3.2020.0512";
+  };
+  minitest = {
+    groups = ["default"];
+    platforms = [];
+    source = {
+      remotes = ["https://rubygems.org"];
+      sha256 = "170y2cvx51gm3cm3nhdf7j36sxnkh6vv8ls36p90ric7w8w16h4v";
+      type = "gem";
+    };
+    version = "5.14.2";
+  };
+  multi_xml = {
+    groups = ["default"];
+    platforms = [];
+    source = {
+      remotes = ["https://rubygems.org"];
+      sha256 = "0lmd4f401mvravi1i1yq7b2qjjli0yq7dfc4p1nj5nwajp7r6hyj";
+      type = "gem";
+    };
+    version = "0.6.0";
+  };
+  thread_safe = {
+    groups = ["default"];
+    platforms = [];
+    source = {
+      remotes = ["https://rubygems.org"];
+      sha256 = "0nmhcgq6cgz44srylra07bmaw99f5271l0dpsvl5f75m44l0gmwy";
+      type = "gem";
+    };
+    version = "0.3.6";
+  };
+  tzinfo = {
+    dependencies = ["thread_safe"];
+    groups = ["default"];
+    platforms = [];
+    source = {
+      remotes = ["https://rubygems.org"];
+      sha256 = "1i3jh086w1kbdj3k5l60lc3nwbanmzdf8yjj3mlrx9b2gjjxhi9r";
+      type = "gem";
+    };
+    version = "1.2.7";
+  };
+}

pkgs/applications/window-managers/sway/default.nix

@@ -7,13 +7,13 @@
 
 stdenv.mkDerivation rec {
   pname = "sway-unwrapped";
-  version = "1.5";
+  version = "1.5.1";
 
   src = fetchFromGitHub {
     owner = "swaywm";
     repo = "sway";
     rev = version;
-    sha256 = "0r3b7h778l9i20z3him9i2qsaynpn9y78hzfgv3cqi8fyry2c4f9";
+    sha256 = "1xsa3h8zhf29p0mi90baxpr76jkd9pd1gr97ky8cnjbcs4isj9j0";
   };
 
   patches = [
@@ -21,12 +21,6 @@ stdenv.mkDerivation rec {
     ./load-configuration-from-etc.patch
   ];
 
-  postPatch = ''
-    substituteInPlace meson.build \
-      --replace "v1.5" "1.5" \
-      --replace "wlroots_version = ['>=0.11.0', '<0.12.0']" "wlroots_version = ['>=0.11.0', '<0.13.0']"
-  '';
-
   nativeBuildInputs = [
     meson ninja pkg-config wayland scdoc
   ];

pkgs/data/fonts/jetbrains-mono/default.nix

@@ -1,14 +1,14 @@
 { lib, fetchzip }:
 
 let
-  version = "2.200";
+  version = "2.210";
 in
 fetchzip {
   name = "JetBrainsMono-${version}";
 
   url = "https://github.com/JetBrains/JetBrainsMono/releases/download/v${version}/JetBrainsMono-${version}.zip";
 
-  sha256 = "16v914ph9sgdz3w56yz9f26zpj2lpxjb6ppnphxlmbllh68z1fh4";
+  sha256 = "05csy42qji8xbaq5iap2nmki0d0cbiwiq9kbzjd1cah9qn6gfill";
 
   postFetch = ''
     mkdir -p $out/share/fonts

pkgs/data/fonts/vista-fonts/default.nix

@@ -1,4 +1,4 @@
-{stdenv, fetchzip, cabextract}:
+{ stdenv, fetchzip, cabextract }:
 
 fetchzip {
   name = "vista-fonts-1";
@@ -21,7 +21,7 @@ fetchzip {
     done
   '';
 
-  sha256 = "1l27zg5jraa16zm11d3qz1w7m6f1ih3xy5avww454ylm50fw6z11";
+  sha256 = "sha256-x7JSXS9Q1fzlJTVR+MAS3f2+cmo/H0s1qkY9FPjx2zI=";
 
   meta = {
     description = "Some TrueType fonts from Microsoft Windows Vista (Calibri, Cambria, Candara, Consolas, Constantia, Corbel)";

pkgs/desktops/gnome-3/core/gdm/default.nix

@@ -47,13 +47,13 @@ in
 
 stdenv.mkDerivation rec {
   pname = "gdm";
-  version = "3.38.1";
+  version = "3.38.2";
 
   outputs = [ "out" "dev" ];
 
   src = fetchurl {
     url = "mirror://gnome/sources/gdm/${stdenv.lib.versions.majorMinor version}/${pname}-${version}.tar.xz";
-    sha256 = "0wkzy5mrxq963fm4pmn6bhml73zmc8bq61frm77a175046c590q8";
+    sha256 = "1k2k3rv10y9dppp6ffz6gqi2p6s3g03bxjyy8njvcjyxqdk6d8i5";
   };
 
   mesonFlags = [

pkgs/desktops/gnome-3/core/mutter/3.34/default.nix

@@ -35,7 +35,7 @@
 , xorgserver
 , python3
 , wrapGAppsHook
-, libsysprof-capture
+, sysprof
 , desktop-file-utils
 , libcap_ng
 , egl-wayland
@@ -96,7 +96,7 @@ stdenv.mkDerivation rec {
     libxkbfile
     pango
     pipewire_0_2 # TODO: backport pipewire 0.3 support
-    libsysprof-capture
+    sysprof
     upower
     xkeyboard_config
     xwayland

pkgs/desktops/gnome-3/extensions/paperwm/default.nix

@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   pname = "gnome-shell-extension-paperwm";
-  version = "38.0";
+  version = "38.1";
 
   src = fetchFromGitHub {
     owner = "paperwm";
     repo = "PaperWM";
     rev = version;
-    sha256 = "01r2ifwrl8w735d0ckzlwhvclax9dxd2ld5y2svv5bp444zbjsag";
+    sha256 = "1jq15qrq3khqpjsjbcc17amdr1k53jkvambdacdf56xbqkycvlgs";
   };
 
   uuid = "paperwm@hedning:matrix.org";

pkgs/development/compilers/fsharp41/default.nix

@@ -41,6 +41,7 @@ stdenv.mkDerivation rec {
     ./fsharp-IsPathRooted-type-inference.patch
     ./fsharp-string-switchName.patch
     ./fsharp-path-overloads.patch
+    ./fsharp-GetFileNameWithoutExtension-type-inference.patch
   ];
 
   configurePhase = ''

pkgs/development/compilers/fsharp41/fsharp-GetFileNameWithoutExtension-type-inference.patch

@@ -0,0 +1,13 @@
+diff --git a/src/scripts/fssrgen.fsx b/src/scripts/fssrgen.fsx
+index 0bee9b79e..e6ceda11e 100644
+--- a/src/scripts/fssrgen.fsx
++++ b/src/scripts/fssrgen.fsx
+@@ -329,7 +329,7 @@ let StringBoilerPlate filename =
+     // END BOILERPLATE        
+ "            
+ 
+-let RunMain(filename, outFilename, outXmlFilenameOpt, projectNameOpt) =
++let RunMain(filename:string, outFilename, outXmlFilenameOpt, projectNameOpt) =
+     try
+         let justfilename = System.IO.Path.GetFileNameWithoutExtension(filename)
+         if justfilename |> Seq.exists (fun c -> not(System.Char.IsLetterOrDigit(c))) then

pkgs/development/dhall-modules/Prelude.nix

@@ -1,59 +1,11 @@
-{ buildDhallGitHubPackage, lib }:
+{ buildDhallGitHubPackage }:
 
-let
-  makePrelude =
-    version: { rev, sha256 }:
-      buildDhallGitHubPackage {
-        name      = "Prelude-${version}";
-        owner     = "dhall-lang";
-        repo      = "dhall-lang";
-        directory = "Prelude";
-        file      = "package.dhall";
-
-        inherit rev sha256;
-      };
-
-in
-  lib.mapAttrs makePrelude {
-    # Prelude versions older than 7.0.0 use old-style union literals, which are
-    # no longer supported by the latest version of the standard
-    "7.0.0" = {
-      rev    = "f0509b403ace4b8a72ebb5fa9c473b9aeabeaf33";
-      sha256 = "00ldlvqfh411vnrnc41zfnlvgfanwfd3l8hdia8kni3r8q9qmd71";
-    };
-
-    "8.0.0" = {
-      rev    = "136a3491753fef251b2087031617d1ee1053f285";
-      sha256 = "0haxd5dhi5bmg06a0hx1blpivmwrcnndydwagibj3zvch4knyi2q";
-    };
-
-    "9.0.0" = {
-      rev    = "6cbf57c946e7e6576babc23a38320e53ecfa6bee";
-      sha256 = "1r06fijszyifq5b4j6libwkm06g8693m9n5c4kq61dvzrjfd2gim";
-    };
-
-    "10.0.0" = {
-      rev    = "ecbf82785cff406bbd162bbabf3df6f817c805e0";
-      sha256 = "0gxkr9649jqpykdzqjc98gkwnjry8wp469037brfghyidwsm021m";
-    };
-
-    "11.0.0" = {
-      rev    = "8098184d17c3aecc82674a7b874077a7641be05a";
-      sha256 = "0rdvyxq7mvas82wsfzzpk6imzm8ax4q58l522mx0ks69pacpr3yi";
-    };
-
-    "11.1.0" = {
-      rev    = "31e90e1996f6c4cb50e03ccb1f3c45beb4bd278c";
-      sha256 = "0rdvyxq7mvas82wsfzzpk6imzm8ax4q58l522mx0ks69pacpr3yi";
-    };
-
-    "12.0.0" = {
-      rev    = "9f248138f69ee5e22192dc3d0417d5c77b189e04";
-      sha256 = "1gbr0376sfamp0ibhcbxz4vaxr6ipv42y42p5wyksfhz3ls9x5ph";
-    };
-
-    "13.0.0" = {
-      rev    = "48db9e1ff1f8881fa4310085834fbc19e313ebf0";
-      sha256 = "0kg3rzag3irlcldck63rjspls614bc2sbs3zq44h0pzcz9v7z5h9";
-    };
-  }
+buildDhallGitHubPackage {
+  name      = "Prelude-13.0.0";
+  owner     = "dhall-lang";
+  repo      = "dhall-lang";
+  directory = "Prelude";
+  file      = "package.dhall";
+  rev       = "48db9e1ff1f8881fa4310085834fbc19e313ebf0";
+  sha256    = "0kg3rzag3irlcldck63rjspls614bc2sbs3zq44h0pzcz9v7z5h9";
+}

pkgs/development/dhall-modules/dhall-kubernetes.nix

@@ -1,27 +1,10 @@
-{ buildDhallGitHubPackage, lib }:
+{ buildDhallGitHubPackage }:
 
-let
-  makeDhallKubernetes =
-    version: { rev, sha256 }:
-      buildDhallGitHubPackage {
-        name  = "dhall-kubernetes-${version}";
-        owner = "dhall-lang";
-        repo  = "dhall-kubernetes";
-        file  = "package.dhall";
-
-        inherit rev sha256;
-      };
-
-in
-  lib.mapAttrs makeDhallKubernetes {
-    # 2.1.0 was the first version to introduce a top-level `package.dhall` file
-    "2.1.0" = {
-      rev    = "bbfec3d8548b605f1c9628f34029ab4a7d928839";
-      sha256 = "10zkigj05khiy6w2sqcm5nw7d47r5k52xq8np8q86h0phy798g96";
-    };
-
-    "3.0.0" = {
-      rev    = "3c6d09a9409977cdde58a091d76a6d20509ca4b0";
-      sha256 = "1r4awh770ghsrwabh5ddy3jpmrbigakk0h32542n1kh71w3cdq1h";
-    };
-  }
+buildDhallGitHubPackage {
+  name   = "dhall-kubernetes-3.0.0";
+  owner  = "dhall-lang";
+  repo   = "dhall-kubernetes";
+  file   = "package.dhall";
+  rev    = "3c6d09a9409977cdde58a091d76a6d20509ca4b0";
+  sha256 = "1r4awh770ghsrwabh5ddy3jpmrbigakk0h32542n1kh71w3cdq1h";
+}

pkgs/development/dhall-modules/dhall-packages.nix

@@ -1,51 +1,51 @@
-{ buildDhallGitHubPackage, dhall-kubernetes, lib, Prelude }:
+{ buildDhallGitHubPackage, dhall-kubernetes, Prelude }:
 
 let
-  makeDhallPackages =
-    version: { rev, sha256, dependencies }:
-      buildDhallGitHubPackage {
-        name  = "dhall-packages-${version}";
-        owner = "EarnestResearch";
-        repo  = "dhall-packages";
-        file  = "package.dhall";
+  Prelude_12_0_0 = Prelude.overridePackage {
+    name = "Prelude-12.0.0";
+    rev    = "9f248138f69ee5e22192dc3d0417d5c77b189e04";
+    sha256 = "1gbr0376sfamp0ibhcbxz4vaxr6ipv42y42p5wyksfhz3ls9x5ph";
+  };
 
-        inherit rev sha256 dependencies;
-      };
+  kubernetes = {
+    "6a47bd" = dhall-kubernetes.overridePackage {
+      name   = "dhall-kubernetes-6a47bd";
+      rev    = "6a47bd50c4d3984a13570ea62382a3ad4a9919a4";
+      sha256 = "1azqs0x2kia3xw93rfk2mdi8izd7gy9aq6qzbip32gin7dncmfhh";
+    };
+
+    "4ad581" = dhall-kubernetes.overridePackage {
+      name   = "dhall-kubernetes-4ad581";
+      rev    = "4ad58156b7fdbbb6da0543d8b314df899feca077";
+      sha256 = "12fm70qbhcainxia388svsay2cfg9iksc6mss0nvhgxhpypgp8r0";
+    };
+
+    "fee24c" = dhall-kubernetes.overridePackage {
+      name   = "dhall-kubernetes-fee24c";
+      rev    = "fee24c0993ba0b20190e2fdb94e386b7fb67252d";
+      sha256 = "11d93z8y0jzrb8dl43gqha9z96nxxqkl7cbxpz8hw8ky9x6ggayk";
+    };
+  };
 
 in
-  lib.mapAttrs makeDhallPackages {
-    "0.11.1" =
-      let
-        k8s_6a47bd = dhall-kubernetes.override {
-          rev    = "6a47bd50c4d3984a13570ea62382a3ad4a9919a4";
-          sha256 = "1azqs0x2kia3xw93rfk2mdi8izd7gy9aq6qzbip32gin7dncmfhh";
-        };
+  buildDhallGitHubPackage {
+    name   = "dhall-packages-0.11.1";
+    owner  = "EarnestResearch";
+    repo   = "dhall-packages";
+    file   = "package.dhall";
+    rev    = "8d228f578fbc7bb16c04a7c9ac8c6c7d2e13d1f7";
+    sha256 = "1v4y1x13lxy6cxf8xqc6sb0mc4mrd4frkxih95v9q2wxw4vkw2h7";
 
-        k8s_4ad581 = dhall-kubernetes.override {
-          rev    = "4ad58156b7fdbbb6da0543d8b314df899feca077";
-          sha256 = "12fm70qbhcainxia388svsay2cfg9iksc6mss0nvhgxhpypgp8r0";
-        };
-
-        k8s_fee24c = dhall-kubernetes.override {
-          rev    = "fee24c0993ba0b20190e2fdb94e386b7fb67252d";
-          sha256 = "11d93z8y0jzrb8dl43gqha9z96nxxqkl7cbxpz8hw8ky9x6ggayk";
-        };
-
-      in
-        { rev    = "8d228f578fbc7bb16c04a7c9ac8c6c7d2e13d1f7";
-          sha256 = "1v4y1x13lxy6cxf8xqc6sb0mc4mrd4frkxih95v9q2wxw4vkw2h7";
-
-          dependencies = [
-            (k8s_6a47bd.override { file = "1.14/package.dhall"; })
-            (k8s_6a47bd.override { file = "1.15/package.dhall"; })
-            (k8s_6a47bd.override { file = "1.16/package.dhall"; })
-            (k8s_4ad581.override { file = "types.dhall"; })
-            (k8s_fee24c.override { file = "types/io.k8s.api.core.v1.ServiceSpec.dhall"; })
-            (k8s_fee24c.override { file = "types/io.k8s.api.core.v1.PodTemplateSpec.dhall"; })
-            Prelude."12.0.0"
-            (Prelude."12.0.0".override { file = "JSON/package.dhall"; })
-            (Prelude."12.0.0".override { file = "JSON/Type"; })
-            (Prelude."12.0.0".override { file = "Map/Type"; })
-          ];
-        };
+    dependencies = [
+      (kubernetes."6a47bd".overridePackage { file = "1.14/package.dhall"; })
+      (kubernetes."6a47bd".overridePackage { file = "1.15/package.dhall"; })
+      (kubernetes."6a47bd".overridePackage { file = "1.16/package.dhall"; })
+      (kubernetes."4ad581".overridePackage { file = "types.dhall"; })
+      (kubernetes."fee24c".overridePackage { file = "types/io.k8s.api.core.v1.ServiceSpec.dhall"; })
+      (kubernetes."fee24c".overridePackage { file = "types/io.k8s.api.core.v1.PodTemplateSpec.dhall"; })
+      Prelude_12_0_0
+      (Prelude_12_0_0.overridePackage { file = "JSON/package.dhall"; })
+      (Prelude_12_0_0.overridePackage { file = "JSON/Type"; })
+      (Prelude_12_0_0.overridePackage { file = "Map/Type"; })
+    ];
   }

pkgs/development/dhall-modules/lib.nix

@@ -0,0 +1,25 @@
+{ lib }:
+
+let
+  # This is essentially the same thing as `lib.makeOverridable`, except storing
+  # the override method in a method named `overridePackage` so that it's not
+  # shadowed by the `override` method added by `callPackage`
+  makePackageOverridable = f: args:
+    let
+      result = lib.makeOverridable f args;
+
+      copyArgs = g: lib.setFunctionArgs g (lib.functionArgs f);
+
+      overrideWith =
+        update: args // (if lib.isFunction update then update args else update);
+
+      overridePackage =
+        copyArgs (update: makePackageOverridable f (overrideWith update));
+
+    in
+      result // { inherit overridePackage; };
+
+in
+  lib // {
+    inherit makePackageOverridable;
+  }

pkgs/development/interpreters/dhall/build-dhall-directory-package.nix

@@ -5,7 +5,7 @@
 # the `file`
 #
 # This function is used by `dhall-to-nixpkgs` when given a directory
-lib.makeOverridable
+lib.makePackageOverridable
   ( { # Arguments passed through to `buildDhallPackage`
       name
     , dependencies ? []

pkgs/development/interpreters/dhall/build-dhall-github-package.nix

@@ -1,7 +1,7 @@
 { buildDhallPackage, fetchFromGitHub, lib }:
 
 # This function is used by `dhall-to-nixpkgs` when given a GitHub repository
-lib.makeOverridable
+lib.makePackageOverridable
   ( { # Arguments passed through to `buildDhallPackage`
       name
     , dependencies ? []

pkgs/development/interpreters/wasmtime/default.nix

@@ -2,17 +2,17 @@
 
 rustPlatform.buildRustPackage rec {
   pname = "wasmtime";
-  version = "0.20.0";
+  version = "0.21.0";
 
   src = fetchFromGitHub {
     owner = "bytecodealliance";
     repo = pname;
     rev = "v${version}";
-    sha256 = "01k1fpk2qp4kv0xr4f0xmrjkr98j5ws48r1aks8l80mffs4ynqfr";
+    sha256 = "0q7wsnq5zdskxwzsxwm98jfnv2frnwca1dkhwndcn9yyz2gyw57m";
     fetchSubmodules = true;
   };
 
-  cargoSha256 = "0vghcs1nbxlkmw9wfikzb1ndscx7fkmgv5q8dnfcisl05zpkj7si";
+  cargoSha256 = "1r1fm28zaxfbzd17jzaz8ql6ss6y6djgdhpfpkvpbw9l8l06x4lc";
 
   nativeBuildInputs = [ python cmake clang ];
   buildInputs = [ llvmPackages.libclang ] ++

pkgs/development/libraries/cpp-utilities/default.nix

@@ -7,13 +7,13 @@
 
 stdenv.mkDerivation rec {
   pname = "cpp-utilities";
-  version = "5.7.0";
+  version = "5.8.0";
 
   src = fetchFromGitHub {
     owner = "Martchus";
     repo = pname;
     rev = "v${version}";
-    sha256 = "04483v9bw6wp831f34fn46zj54v9y7f6qqfmx85fjxhkr3rqk4i0";
+    sha256 = "06mpag2hg2vb03pdc5f9cjkpgw3kdh3bh29xfrbb16ixk4rhv0j7";
   };
 
   nativeBuildInputs = [ cmake ];

pkgs/development/libraries/doctest/default.nix

@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   pname = "doctest";
-  version = "2.4.0";
+  version = "2.4.1";
 
   src = fetchFromGitHub {
     owner = "onqtam";
     repo = "doctest";
     rev = version;
-    sha256 = "1yi95saqv8qb3ix6w8d7ffvs7qbwvqmq6wblckhxhicxxdxk85cd";
+    sha256 = "17g7n6rjs90i0b231x5s934qnr8m80ga2yg1z344bnsdiqcjd63w";
   };
 
   nativeBuildInputs = [ cmake ];

pkgs/development/libraries/duckdb/default.nix

@@ -5,13 +5,13 @@
 
 stdenv.mkDerivation rec {
   pname = "duckdb";
-  version = "0.2.1";
+  version = "0.2.2";
 
   src = fetchFromGitHub {
     owner = "cwida";
     repo = "duckdb";
     rev = "v${version}";
-    sha256 = "18l4qdzfm8k9ggn49r3h99cbcmmq01byzkxps3pvmq8q246hb55x";
+    sha256 = "1pzz2zjzpvji5am21vd9kjxj0pnxsjmrsfqrym9h2rk2mi7p2cx8";
   };
 
   nativeBuildInputs = [ cmake ];

pkgs/development/libraries/globalarrays/default.nix

@@ -3,7 +3,7 @@
 } :
 
 let
-  version = "5.7.2";
+  version = "5.8";
 
 in stdenv.mkDerivation {
   pname = "globalarrays";
@@ -13,7 +13,7 @@ in stdenv.mkDerivation {
     owner = "GlobalArrays";
     repo = "ga";
     rev = "v${version}";
-    sha256 = "0c1y9a5jpdw9nafzfmvjcln1xc2gklskaly0r1alm18ng9zng33i";
+    sha256 = "0bky91ncz6vy0011ps9prsnq9f4a5s5xwr23kkmi39xzg0417mnd";
   };
 
   nativeBuildInputs = [ autoreconfHook ];

pkgs/development/libraries/libe57format/default.nix

@@ -5,6 +5,9 @@
   boost,
   xercesc,
   icu,
+
+  dos2unix,
+  fetchpatch,
 }:
 
 stdenv.mkDerivation rec {
@@ -25,9 +28,39 @@ stdenv.mkDerivation rec {
   buildInputs = [
     boost
     icu
+  ];
+
+  propagatedBuildInputs = [
+    # Necessary for projects that try to find libE57Format via CMake
+    # due to the way that libe57format's CMake config is written.
     xercesc
   ];
 
+  # TODO: Remove CMake patching when https://github.com/asmaloney/libE57Format/pull/60 is available.
+
+  # GNU patch cannot patch `CMakeLists.txt` that has CRLF endings,
+  # see https://unix.stackexchange.com/questions/239364/how-to-fix-hunk-1-failed-at-1-different-line-endings-message/243748#243748
+  # so convert it first.
+  prePatch = ''
+    ${dos2unix}/bin/dos2unix CMakeLists.txt
+  '';
+  patches = [
+    (fetchpatch {
+      name = "libE57Format-cmake-Fix-config-filename.patch";
+      url = "https://github.com/asmaloney/libE57Format/commit/279d8d6b60ee65fb276cdbeed74ac58770a286f9.patch";
+      sha256 = "0fbf92hs1c7yl169i7zlbaj9yhrd1yg3pjf0wsqjlh8mr5m6rp14";
+    })
+  ];
+  # It appears that while the patch has
+  #     diff --git a/cmake/E57Format-config.cmake b/cmake/e57format-config.cmake
+  #     similarity index 100%
+  #     rename from cmake/E57Format-config.cmake
+  #     rename to cmake/e57format-config.cmake
+  # GNU patch doesn't interpret that.
+  postPatch = ''
+    mv cmake/E57Format-config.cmake cmake/e57format-config.cmake
+  '';
+
   # The build system by default builds ONLY static libraries, and with
   # `-DE57_BUILD_SHARED=ON` builds ONLY shared libraries, see:
   #     https://github.com/asmaloney/libE57Format/issues/48

pkgs/development/libraries/opencv/default.nix

@@ -19,13 +19,13 @@ in
 
 stdenv.mkDerivation rec {
   pname = "opencv";
-  version = "2.4.13";
+  version = "2.4.13.7";
 
   src = fetchFromGitHub {
-    owner = "Itseez";
+    owner = "opencv";
     repo = "opencv";
     rev = version;
-    sha256 = "1k29rxlvrhgc5hadg2nc50wa3d2ls9ndp373257p756a0aividxh";
+    sha256 = "062js7zhh4ixi2wk61wyi23qp9zsk5vw24iz2i5fab2hp97y5zq3";
   };
 
   patches =
@@ -87,6 +87,5 @@ stdenv.mkDerivation rec {
     license = licenses.bsd3;
     maintainers = with maintainers; [ ];
     platforms = platforms.linux;
-    broken = true;
   };
 }

pkgs/development/libraries/physics/geant4/default.nix

@@ -38,6 +38,9 @@
 # For enablePython
 , boost
 , python3
+
+# For tests
+, callPackage
 }:
 
 let
@@ -108,6 +111,8 @@ stdenv.mkDerivation rec {
           inherit stdenv fetchurl;
           geant_version = version;
       };
+
+    tests = callPackage ./tests.nix {};
   };
 
   # Set the myriad of envars required by Geant4 if we use a nix-shell.

pkgs/development/libraries/physics/geant4/tests.nix

@@ -0,0 +1,31 @@
+{ stdenv, cmake, geant4 }:
+
+{
+  example_B1 = stdenv.mkDerivation {
+    name = "${geant4.name}-test-example_B1";
+
+    inherit (geant4) src;
+
+    nativeBuildInputs = [ cmake ];
+    buildInputs = [ geant4 ];
+    checkInputs = with geant4.data; [
+      G4EMLOW
+      G4ENSDFSTATE
+      G4PARTICLEXS
+      G4PhotonEvaporation
+    ];
+
+    prePatch = ''
+      cd examples/basic/B1
+    '';
+
+    doCheck = true;
+    checkPhase = ''
+      runHook preCheck
+
+      ./exampleB1 ../run2.mac
+
+      runHook postCheck
+    '';
+  };
+}

pkgs/development/libraries/science/math/libtorch/bin.nix

@@ -45,6 +45,14 @@ in stdenv.mkDerivation {
 
     # We do not care about Java support...
     rm -f $out/lib/lib*jni* 2> /dev/null || true
+
+    # Fix up library paths for split outputs
+    substituteInPlace $dev/share/cmake/Torch/TorchConfig.cmake \
+      --replace \''${TORCH_INSTALL_PREFIX}/lib "$out/lib" \
+
+    substituteInPlace \
+      $dev/share/cmake/Caffe2/Caffe2Targets-release.cmake \
+      --replace \''${_IMPORT_PREFIX}/lib "$out/lib" \
   '';
 
   postFixup = let

pkgs/development/libraries/science/math/libtorch/test/CMakeLists.txt

@@ -1,3 +1,4 @@
+cmake_minimum_required(VERSION 3.0)
 find_package(Torch REQUIRED)
 set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${TORCH_CXX_FLAGS}")
 add_executable(test test.cpp)

pkgs/development/libraries/simpleitk/default.nix

@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   pname = "simpleitk";
-  version = "2.0.0";
+  version = "2.0.1";
 
   src = fetchFromGitHub {
     owner = "SimpleITK";
     repo = "SimpleITK";
     rev = "v${version}";
-    sha256 = "1nf3cl3ywqg04446xhkb97kcashrgibsihxn2sqrs81i9d0rw5kn";
+    sha256 = "0yijli538hd96pfg4vpfk983y6d5bw9dlbs9nsq4rp83r08qdcc5";
   };
 
   nativeBuildInputs = [ cmake swig ];

pkgs/development/libraries/wxwidgets/3.1/default.nix

@@ -1,13 +1,32 @@
-{ stdenv, fetchFromGitHub, fetchurl, pkgconfig
-, libXinerama, libSM, libXxf86vm
-, gtk2, gtk3
-, xorgproto, gst_all_1, setfile
+{ stdenv
+, fetchFromGitHub
+, fetchurl
+, pkgconfig
+, libXinerama
+, libSM
+, libXxf86vm
+, libXtst
+, gtk2
+, GConf ? null
+, gtk3
+, xorgproto
+, gst_all_1
+, setfile
 , libGLSupported ? stdenv.lib.elem stdenv.hostPlatform.system stdenv.lib.platforms.mesaPlatforms
-, withMesa ? libGLSupported, libGLU ? null, libGL ? null
-, compat28 ? false, compat30 ? true, unicode ? true
+, withMesa ? libGLSupported
+, libGLU ? null
+, libGL ? null
+, compat28 ? false
+, compat30 ? true
+, unicode ? true
 , withGtk2 ? true
-, withWebKit ? false, webkitgtk ? null
-, AGL ? null, Carbon ? null, Cocoa ? null, Kernel ? null, QTKit ? null
+, withWebKit ? false
+, webkitgtk ? null
+, AGL ? null
+, Carbon ? null
+, Cocoa ? null
+, Kernel ? null
+, QTKit ? null
 }:
 
 with stdenv.lib;
@@ -18,47 +37,58 @@ assert withWebKit -> webkitgtk != null;
 assert assertMsg (withGtk2 -> withWebKit == false) "wxGTK31: You cannot enable withWebKit when using withGtk2.";
 
 stdenv.mkDerivation rec {
-  version = "3.1.3";
+  version = "3.1.4";
   pname = "wxwidgets";
 
   src = fetchFromGitHub {
     owner = "wxWidgets";
     repo = "wxWidgets";
     rev = "v${version}";
-    sha256 = "022mby78q7n0bhd4mph04hz93c9qamnvzv3h1s26r839k28760f4";
+    sha256 = "1fwzrk6w5k0vs8kqdq5lpzdbp5c09hx740wg6mi6vgmc1r67dv67";
+    fetchSubmodules = true;
   };
 
   buildInputs = [
-    libXinerama libSM libXxf86vm xorgproto gst_all_1.gstreamer gst_all_1.gst-plugins-base
-  ] ++ optionals withGtk2 [ gtk2 ]
-    ++ optional (!withGtk2) gtk3
-    ++ optional withMesa libGLU
-    ++ optional withWebKit webkitgtk
-    ++ optionals stdenv.isDarwin [ setfile Carbon Cocoa Kernel QTKit ];
+    libXinerama
+    libSM
+    libXxf86vm
+    libXtst
+    xorgproto
+    gst_all_1.gstreamer
+    gst_all_1.gst-plugins-base
+  ] ++ optionals withGtk2 [ gtk2 GConf ]
+  ++ optional (!withGtk2) gtk3
+  ++ optional withMesa libGLU
+  ++ optional withWebKit webkitgtk
+  ++ optionals stdenv.isDarwin [ setfile Carbon Cocoa Kernel QTKit ];
 
   nativeBuildInputs = [ pkgconfig ];
 
   propagatedBuildInputs = optional stdenv.isDarwin AGL;
 
   patches = [
-    (fetchurl { # https://trac.wxwidgets.org/ticket/17942
+    (fetchurl {
+      # https://trac.wxwidgets.org/ticket/17942
       url = "https://trac.wxwidgets.org/raw-attachment/ticket/17942/"
-          + "fix_assertion_using_hide_in_destroy.diff";
+        + "fix_assertion_using_hide_in_destroy.diff";
       sha256 = "009y3dav79wiig789vkkc07g1qdqprg1544lih79199kb1h64lvy";
     })
   ];
 
   configureFlags =
-    [ "--disable-precomp-headers" "--enable-mediactrl"
+    [
+      "--disable-precomp-headers"
+      "--enable-mediactrl"
       (if compat28 then "--enable-compat28" else "--disable-compat28")
-      (if compat30 then "--enable-compat30" else "--disable-compat30") ]
+      (if compat30 then "--enable-compat30" else "--disable-compat30")
+    ]
     ++ optional unicode "--enable-unicode"
     ++ optional withMesa "--with-opengl"
     ++ optionals stdenv.isDarwin
       # allow building on 64-bit
       [ "--with-cocoa" "--enable-universal-binaries" "--with-macosx-version-min=10.7" ]
     ++ optionals withWebKit
-      ["--enable-webview" "--enable-webviewwebkit"];
+      [ "--enable-webview" "--enable-webviewwebkit" ];
 
   SEARCH_LIB = "${libGLU.out}/lib ${libGL.out}/lib ";
 
@@ -90,8 +120,19 @@ stdenv.mkDerivation rec {
     platforms = with platforms; darwin ++ linux;
     license = licenses.wxWindows;
     homepage = "https://www.wxwidgets.org/";
-    description = "a C++ library that lets developers create applications for Windows, macOS, Linux and other platforms with a single code base";
-    longDescription = "wxWidgets gives you a single, easy-to-use API for writing GUI applications on multiple platforms that still utilize the native platform's controls and utilities. Link with the appropriate library for your platform and compiler, and your application will adopt the look and feel appropriate to that platform. On top of great GUI functionality, wxWidgets gives you: online help, network programming, streams, clipboard and drag and drop, multithreading, image loading and saving in a variety of popular formats, database support, HTML viewing and printing, and much more.";
+    description = "A C++ library that lets developers create applications for Windows, macOS, Linux and other platforms with a single code base";
+    longDescription = ''
+      WxWidgets gives you a single, easy-to-use API for
+      writing GUI applications on multiple platforms that still utilize the
+      native platform's controls and utilities. Link with the appropriate library
+      for your platform and compiler, and your application will adopt the look
+      and feel appropriate to that platform. On top of great GUI functionality,
+      wxWidgets gives you: online help, network programming, streams, clipboard
+      and drag and drop, multithreading, image loading and saving in a variety of
+      popular formats, database support, HTML viewing and printing, and much
+      more.
+    '';
     badPlatforms = [ "x86_64-darwin" ];
+    maintainers = with maintainers; [ tfmoraes ];
   };
 }

pkgs/development/python-modules/awkward/default.nix

@@ -10,11 +10,11 @@
 
 buildPythonPackage rec {
   pname = "awkward";
-  version = "0.13.0";
+  version = "0.14.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1a461ee084ea5e98333dacf2506e9b2619ee89cece14b9b99830b546b35c5922";
+    sha256 = "6a3878f46e8bc2acf28a0b9feb69d354ad2fee2a2a0f65c48c115aa74f245204";
   };
 
   nativeBuildInputs = [ pytestrunner ];

pkgs/development/python-modules/azure-mgmt-sql/default.nix

@@ -10,12 +10,12 @@
 
 buildPythonPackage rec {
   pname = "azure-mgmt-sql";
-  version = "0.23.0";
+  version = "0.24.0";
 
   src = fetchPypi {
     inherit pname version;
     extension = "zip";
-    sha256 = "acf7d4c83fb43152a809e3894528e561e601be543250c2824cc615cc88a70855";
+    sha256 = "da391ed00d82cd8e20ca50affdc43b99fd9a7919b54a3a0d53c73cb41eea09d3";
   };
 
   propagatedBuildInputs = [

pkgs/development/python-modules/cairosvg/default.nix

@@ -4,13 +4,13 @@
 
 buildPythonPackage rec {
   pname = "CairoSVG";
-  version = "2.4.2";
+  version = "2.5.0";
 
   disabled = !isPy3k;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1bb7irxbaxxb9ahm3z5wsx1q96mm5gzskc7b6q07h9ikcnb8yrjf";
+    sha256 = "3fc50d10f0cbef53b3ee376a97a88d81bbd9e2f190f7e63de08431a1a08e9afa";
   };
 
   propagatedBuildInputs = [ cairocffi cssselect2 defusedxml pillow tinycss2 ];

pkgs/development/python-modules/dbus-next/default.nix

@@ -7,13 +7,13 @@
 
 buildPythonPackage rec {
   pname = "dbus-next";
-  version = "0.1.4";
+  version = "0.2.1";
 
   src = fetchFromGitHub {
     owner = "altdesktop";
     repo = "python-dbus-next";
     rev = "v${version}";
-    sha256 = "sha256-C/aFDHmt6Qws6ek+++wM5GRN6TEvMGMiFktKIXRdGL0=";
+    sha256 = "0c14mmysx014n1m4pi4ymi6pzxf8dkjr6fm2cmp96x05z9v90vlr";
   };
 
   checkInputs = [

pkgs/development/python-modules/dropbox/default.nix

@@ -3,11 +3,11 @@
 
 buildPythonPackage rec {
   pname = "dropbox";
-  version = "10.7.0";
+  version = "10.8.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "08c1e0bbc16499e0138431e34777c35ea086734ff15ee5067b0df3424df2a9ec";
+    sha256 = "2312a0314d7698f6aa6944bf6d73a756f4ff7d7d90fa26c323a418a84dc3b533";
   };
 
   # Set DROPBOX_TOKEN environment variable to a valid token.

pkgs/development/python-modules/google_cloud_automl/default.nix

@@ -4,11 +4,11 @@
 
 buildPythonPackage rec {
   pname = "google-cloud-automl";
-  version = "2.0.0";
+  version = "2.1.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "16hr1i2771z4yh19xg6kk037h9cv5j64q5bxb9nmkvj12hdwbwgv";
+    sha256 = "520dfe2ee04d28f3088c9c582fa2a534fc272647d5e2e59acc903c0152e61696";
   };
 
   disabled = pythonOlder "3.6";

pkgs/development/python-modules/gphoto2/default.nix

@@ -4,11 +4,11 @@
 
 buildPythonPackage rec {
   pname = "gphoto2";
-  version = "2.2.3";
+  version = "2.2.4";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "35d3ae97a9f13526746fb506de627a73328328528b436a51567fcb7e640883e9";
+    sha256 = "48b4c4ab70826d3ddaaf7440564d513c02d78680fa690994b0640d383ffb8a7d";
   };
 
   nativeBuildInputs = [ pkgconfig ];

pkgs/development/python-modules/itemadapter/default.nix

@@ -2,13 +2,13 @@
 
 buildPythonPackage rec {
   pname = "itemadapter";
-  version = "0.1.1";
+  version = "0.2.0";
 
   disabled = isPy27;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "b5e75d48c769ee5c89de12aeba537b2d62d7b575cd549d5d430ed8a67faa63f2";
+    sha256 = "cb7aaa577fefe2aa6f229ccf4d058e05f44e0178a98c8fb70ee4d95acfabb423";
   };
 
   doCheck = false; # infinite recursion with Scrapy

pkgs/development/python-modules/keep/default.nix

@@ -9,11 +9,11 @@
 
 buildPythonPackage rec {
   pname = "keep";
-  version = "2.9";
+  version = "2.10";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0902kcvhbmy5q5n0ai1df29ybf87qaljz306c5ssl8j9xdjipcq2";
+    sha256 = "ce71d14110df197ab5afdbd26a14c0bd266b79671118ae1351835fa192e61d9b";
   };
 
   propagatedBuildInputs = [

pkgs/development/python-modules/onnx/default.nix

@@ -18,7 +18,7 @@
 
 buildPythonPackage rec {
   pname = "onnx";
-  version = "1.7.0";
+  version = "1.8.0";
 
   # Due to Protobuf packaging issues this build of Onnx with Python 2 gives
   # errors on import.
@@ -27,7 +27,7 @@ buildPythonPackage rec {
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0j6rgfbhsw3a8id8pyg18y93k68lbjbj1kq6qia36h69f6pvlyjy";
+    sha256 = "5f787fd3ce1290e12da335237b3b921152157e51aa09080b65631b3ce3fcc50c";
   };
 
   nativeBuildInputs = [ cmake ];

pkgs/development/python-modules/pytorch/default.nix

@@ -4,8 +4,18 @@
   openMPISupport ? false, openmpi ? null,
   buildDocs ? false,
   cudaArchList ? null,
-  numpy, pyyaml, cffi, click, typing, cmake, hypothesis, numactl, psutil,
-  linkFarm, symlinkJoin,
+
+  # Native build inputs
+  cmake, utillinux, linkFarm, symlinkJoin, which,
+
+  # Build inputs
+  numactl,
+
+  # Propagated build inputs
+  dataclasses, numpy, pyyaml, cffi, click, typing-extensions,
+
+  # Unit tests
+  hypothesis, psutil,
 
   # virtual pkg that consistently instantiates blas across nixpkgs
   # See https://github.com/NixOS/nixpkgs/pull/83888
@@ -17,7 +27,7 @@
   # dependencies for torch.utils.tensorboard
   pillow, six, future, tensorflow-tensorboard, protobuf,
 
-  utillinux, which, isPy3k }:
+  isPy3k, pythonOlder }:
 
 assert !openMPISupport || openmpi != null;
 
@@ -102,7 +112,7 @@ let
 in buildPythonPackage rec {
   pname = "pytorch";
   # Don't forget to update pytorch-bin to the same version.
-  version = "1.6.0";
+  version = "1.7.0";
 
   disabled = !isPy3k;
 
@@ -117,23 +127,10 @@ in buildPythonPackage rec {
     repo   = "pytorch";
     rev    = "v${version}";
     fetchSubmodules = true;
-    sha256 = "14hhjsi6fnpaw9m1a3bhvdinsks6fhss6bbcrfk6jgns64abqdaz";
+    sha256 = "0hb11m5kvs4nsi5bc9ijnv6k07593p9dw40rcn33s9vspinrcjd4";
   };
 
-  patches = lib.optionals stdenv.isAarch64 [
-    # GNU aarch64 assembler does not support 4s on neon mov:
-    # https://github.com/pytorch/pytorch/issues/33124
-    #
-    # Fix from:
-    # https://github.com/pytorch/pytorch/pull/40584
-    #
-    # This patch can be removed with the next major version (1.7.0).
-    (fetchpatch {
-      name = "qnnpack-neon-fix.patch";
-      url = "https://github.com/pytorch/pytorch/commit/7676682584d0caf9243bce74ea0a88711ec4a807.diff";
-      sha256 = "13spncaqlpsp8qk2850yly7xqwmhhfwznhmzkk8jgpslkbx75vgq";
-    })
-  ] ++ lib.optionals stdenv.isDarwin [
+  patches = lib.optionals stdenv.isDarwin [
     # pthreadpool added support for Grand Central Dispatch in April
     # 2020. However, this relies on functionality (DISPATCH_APPLY_AUTO)
     # that is available starting with macOS 10.13. However, our current
@@ -142,6 +139,13 @@ in buildPythonPackage rec {
     ./pthreadpool-disable-gcd.diff
   ];
 
+  # The dataclasses module is included with Python >= 3.7. This should
+  # be fixed with the next PyTorch release.
+  postPatch = ''
+    substituteInPlace setup.py \
+      --replace "'dataclasses'" "'dataclasses; python_version < \"3.7\"'"
+  '';
+
   preConfigure = lib.optionalString cudaSupport ''
     export TORCH_CUDA_ARCH_LIST="${lib.strings.concatStringsSep ";" final_cudaArchList}"
     export CC=${cudatoolkit.cc}/bin/gcc CXX=${cudatoolkit.cc}/bin/g++
@@ -217,9 +221,11 @@ in buildPythonPackage rec {
     click
     numpy
     pyyaml
+    typing-extensions
     # the following are required for tensorboard support
     pillow six future tensorflow-tensorboard protobuf
-  ] ++ lib.optionals openMPISupport [ openmpi ];
+  ] ++ lib.optionals openMPISupport [ openmpi ]
+    ++ lib.optionals (pythonOlder "3.7") [ dataclasses ];
 
   checkInputs = [ hypothesis ninja psutil ];
 

pkgs/development/python-modules/rope/default.nix

@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "rope";
-  version = "0.17.0";
+  version = "0.18.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "658ad6705f43dcf3d6df379da9486529cf30e02d9ea14c5682aa80eb33b649e1";
+    sha256 = "786b5c38c530d4846aa68a42604f61b4e69a493390e3ca11b88df0fbfdc3ed04";
   };
 
   checkInputs = [ nose ];

pkgs/development/python-modules/tensorboardx/default.nix

@@ -19,6 +19,12 @@ buildPythonPackage rec {
 
   propagatedBuildInputs = [ numpy protobuf six ];
 
+  # apparently torch API changed a bit at 1.6
+  postPatch = ''
+    substituteInPlace tensorboardX/pytorch_graph.py --replace "torch.onnx.set_training(model, False)" "torch.onnx.select_model_mode_for_export(model, torch.onnx.TrainingMode.EVAL)"
+  '';
+
+
   disabledTests = [ "test_TorchVis"  "test_onnx_graph" ];
 
   meta = with lib; {

pkgs/development/python-modules/tokenizers/default.nix

@@ -32,6 +32,14 @@ let
     url = "https://norvig.com/big.txt";
     sha256 = "0yz80icdly7na03cfpl0nfk5h3j3cam55rj486n03wph81ynq1ps";
   };
+  docPipelineTokenizer = fetchurl {
+    url = "https://s3.amazonaws.com/models.huggingface.co/bert/anthony/doc-pipeline/tokenizer.json";
+    hash = "sha256-i533xC8J5CDMNxBjo+p6avIM8UOcui8RmGAmK0GmfBc=";
+  };
+  docQuicktourTokenizer = fetchurl {
+    url = "https://s3.amazonaws.com/models.huggingface.co/bert/anthony/doc-quicktour/tokenizer.json";
+    hash = "sha256-ipY9d5DR5nxoO6kj7rItueZ9AO5wq9+Nzr6GuEIfIBI=";
+  };
   openaiVocab = fetchurl {
     url = "https://s3.amazonaws.com/models.huggingface.co/bert/openai-gpt-vocab.json";
     sha256 = "0y40gc9bixj5rxv674br1rxmxkd3ly29p80x1596h8yywwcrpx7x";
@@ -42,16 +50,16 @@ let
   };
 in rustPlatform.buildRustPackage rec {
   pname = "tokenizers";
-  version = "0.9.2";
+  version = "0.9.4";
 
   src = fetchFromGitHub {
     owner = "huggingface";
     repo = pname;
     rev = "python-v${version}";
-    sha256 = "0rsm1g5zfq3ygdb3s8v9xqqpgfzvvkc4n5ik3ahy8sw7pyjljb4m";
+    hash = "sha256-JXoH9yfhMIFg5qDY5zrF6iWb7XKugjMfk1NxSizfaWg=";
   };
 
-  cargoSha256 = "0yn699dq9hdjh7fyci99ni8mmd5qdhzrsi80grzgf5cch8g38rbi";
+  cargoSha256 = "sha256-u9qitrOxJSABs0VjwHUZgmw7VTQXNbp6l8fKKE/RQ7M=";
 
   sourceRoot = "source/bindings/python";
 
@@ -82,6 +90,8 @@ in rustPlatform.buildRustPackage rec {
       ln -s ${robertaMerges} roberta-base-merges.txt
       ln -s ${albertVocab} albert-base-v1-tokenizer.json
       ln -s ${bertVocab} bert-base-uncased-vocab.txt
+      ln -s ${docPipelineTokenizer} bert-wiki.json
+      ln -s ${docQuicktourTokenizer} tokenizer-wiki.json
       ln -s ${norvigBig} big.txt
       ln -s ${openaiVocab} openai-gpt-vocab.json
       ln -s ${openaiMerges} openai-gpt-merges.txt )

pkgs/development/python-modules/transformers/default.nix

@@ -45,6 +45,11 @@ buildPythonPackage rec {
     timeout-decorator
   ];
 
+  postPatch = ''
+    substituteInPlace setup.py \
+      --replace "tokenizers == 0.9.2" "tokenizers"
+  '';
+
   preCheck = ''
     export HOME="$TMPDIR"
 

pkgs/development/python-modules/trytond/default.nix

@@ -25,12 +25,12 @@ with stdenv.lib;
 
 buildPythonApplication rec {
   pname = "trytond";
-  version = "5.6.8";
+  version = "5.8.0";
   disabled = pythonOlder "3.5";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "330067d7319a50b9fb15e89d224e89ab28bc363926774adf7fa119f681b106b6";
+    sha256 = "ae9baf7a83a3249686703eee71e81a0283570f545ce985a999fd74b6ab3d4e4f";
   };
 
   # Tells the tests which database to use

pkgs/development/python-modules/uproot-methods/default.nix

@@ -6,12 +6,12 @@
 }:
 
 buildPythonPackage rec {
-  version = "0.7.4";
+  version = "0.8.0";
   pname = "uproot-methods";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "7f110208a3a2aa9b4d6da11233fd0f206ea039b52bca4bfe312f1b9dcf788476";
+    sha256 = "57da3d67e1a42b548020debdd23285b5710e3bb2aac20eb7b2d2a686822aa1ab";
   };
 
   propagatedBuildInputs = [ numpy awkward ];

pkgs/development/python-modules/wxPython/4.1.nix

@@ -0,0 +1,75 @@
+{ lib
+, stdenv
+, fetchPypi
+, buildPythonPackage
+, which
+, pkgconfig
+, python
+, isPy27
+, pyopengl
+, doxygen
+, cairo
+, ncurses
+, pango
+, wxGTK
+}:
+let
+  dynamic-linker = stdenv.cc.bintools.dynamicLinker;
+in
+buildPythonPackage rec {
+  pname = "wxPython";
+  version = "4.1.0";
+  disabled = isPy27;
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "12x4ci5q7qni4rkfiq6lnpn1fk8b0sfc6dck5wyxkj2sfp5pa91f";
+  };
+
+  # https://github.com/NixOS/nixpkgs/issues/75759
+  # https://github.com/wxWidgets/Phoenix/issues/1316
+  doCheck = false;
+
+  nativeBuildInputs = [ which doxygen wxGTK pkgconfig ];
+
+  buildInputs = [
+    wxGTK.gtk
+    ncurses
+  ];
+
+  DOXYGEN = "${doxygen}/bin/doxygen";
+
+  preConfigure = lib.optionalString (!stdenv.isDarwin) ''
+    substituteInPlace wx/lib/wxcairo/wx_pycairo.py \
+      --replace 'cairoLib = None' 'cairoLib = ctypes.CDLL("${cairo}/lib/libcairo.so")'
+    substituteInPlace wx/lib/wxcairo/wx_pycairo.py \
+      --replace '_dlls = dict()' '_dlls = {k: ctypes.CDLL(v) for k, v in [
+        ("gdk",        "${wxGTK.gtk}/lib/libgtk-x11-3.0.so"),
+        ("pangocairo", "${pango.out}/lib/libpangocairo-1.0.so"),
+        ("appsvc",     None)
+      ]}'
+
+    # https://github.com/wxWidgets/Phoenix/pull/1584
+    # It'll be not needed in next version because https://github.com/wxWidgets/Phoenix/pull/1699
+    substituteInPlace build.py --replace "os.environ['PYTHONPATH'] = phoenixDir()" \
+      "os.environ['PYTHONPATH'] = os.environ['PYTHONPATH'] + os.pathsep + phoenixDir()"
+  '';
+
+  buildPhase = ''
+    ${python.interpreter} build.py -v --use_syswx dox etg --nodoc build_py
+  '';
+
+  installPhase = ''
+    ${python.interpreter} setup.py install --skip-build --prefix=$out
+    wrapPythonPrograms
+  '';
+
+  passthru = { inherit wxGTK; };
+
+  meta = with lib; {
+    description = "Cross platform GUI toolkit for Python, Phoenix version";
+    homepage = "http://wxpython.org/";
+    license = licenses.wxWindows;
+    maintainers = with maintainers; [ tfmoraes ];
+  };
+}

pkgs/development/python-modules/xstatic-bootbox/default.nix

@@ -5,11 +5,11 @@
 
 buildPythonPackage rec {
   pname = "XStatic-Bootbox";
-  version = "4.4.0.1";
+  version = "5.5.1.1";
 
   src = fetchPypi {
     inherit version pname;
-    sha256 = "1g00q38g1k576lxjlwglv4w3fj4z0z8lxlwpc66wyhjglj4r4bwd";
+    sha256 = "4b2120bb33a1d8ada8f9e0532ad99987aa03879b17b08bfdc6b8326d6eb7c205";
   };
 
   # no tests implemented

pkgs/development/tools/analysis/cargo-tarpaulin/default.nix

@@ -2,13 +2,13 @@
 
 rustPlatform.buildRustPackage rec {
   pname = "cargo-tarpaulin";
-  version = "0.15.0";
+  version = "0.17.0";
 
   src = fetchFromGitHub {
     owner = "xd009642";
     repo = "tarpaulin";
     rev = version;
-    sha256 = "0ga2zfq4365hxvr3wd3isc146ibivy3bfcy24rb6cq3av3b90a8k";
+    sha256 = "1z104cd3wg718x1d89znppx4h6f0c6icgmpcllyrd0d19lb71a2b";
   };
 
   nativeBuildInputs = [
@@ -16,7 +16,7 @@ rustPlatform.buildRustPackage rec {
   ];
   buildInputs = [ openssl ];
 
-  cargoSha256 = "1ij1bic95315kba7k7igix33kmwr2va0c2hbysjs0bl5kcnai4f7";
+  cargoSha256 = "0pn9xgryfb7f0plx50v9i7hsv1wib87pi0fl43cv6hgqyrdb52ny";
   #checkFlags = [ "--test-threads" "1" ];
   doCheck = false;
 

pkgs/development/tools/analysis/codeql/default.nix

@@ -12,7 +12,7 @@
 
 stdenv.mkDerivation rec {
   pname = "codeql";
-  version = "2.3.2";
+  version = "2.3.3";
 
   dontConfigure = true;
   dontBuild = true;
@@ -20,7 +20,7 @@ stdenv.mkDerivation rec {
 
   src = fetchzip {
     url = "https://github.com/github/codeql-cli-binaries/releases/download/v${version}/codeql.zip";
-    sha256 = "1fzybh21jw02gdmqkh54gin4chqxj5r5alkrqk1wcryhf73brsbb";
+    sha256 = "17a574g92jfff2059mhaw2x31npglp9rfcwwk73adbajpiyf4g8q";
   };
 
   nativeBuildInputs = [

pkgs/development/tools/azcopy/default.nix

@@ -2,18 +2,18 @@
 
 buildGoModule rec {
   pname = "azure-storage-azcopy";
-  version = "10.6.1";
+  version = "10.7.0";
 
   src = fetchFromGitHub {
     owner = "Azure";
     repo = "azure-storage-azcopy";
     rev = "v${version}";
-    sha256 = "1gmpdyc55mkzdkkhyzvy9517znvcj8hd9x3rpkpr86vfzgjv9qyv";
+    sha256 = "0l2109r9a8fhd66zgsi56zdmy390fpnvy08rbxf6rfc0a55n96ka";
   };
 
   subPackages = [ "." ];
 
-  vendorSha256 = "10sxkb2dh1il4ps15dlvq0xsry8hax27imb5qg3khdmjhb4yaj7k";
+  vendorSha256 = "032yzl8mmgmmxbpsymndp4ddgi572jh5drwql0bjjabp3yqwj1g1";
 
   doCheck = false;
 

pkgs/development/tools/build-managers/bear/default.nix

@@ -16,13 +16,13 @@
 
 stdenv.mkDerivation rec {
   pname = "bear";
-  version = "3.0.1";
+  version = "3.0.2";
 
   src = fetchFromGitHub {
     owner = "rizsotto";
     repo = pname;
     rev = version;
-    sha256 = "02vzlm48ywf6s3fly19j94k11dqx94x8pgmkq1ylx3z3d1y3b5zb";
+    sha256 = "0x1an9sxcr0f45c9kdpgpcrc773cc28zsffbxddpqp0h1qh9s4ns";
   };
 
   nativeBuildInputs = [ cmake pkg-config ];

pkgs/development/tools/build-managers/sbt-extras/default.nix

@@ -1,18 +1,17 @@
-{ stdenv, fetchFromGitHub, which, curl, makeWrapper, jdk }:
+{ stdenv, fetchFromGitHub, which, curl, makeWrapper, jdk, writeScript
+, common-updater-scripts, cacert, git, nixfmt, nix, jq, coreutils, gnused
+, nixosTests }:
 
-let
-  rev = "1e9230f35879ce23cbd8d16add07d2134fd479c9";
-  version = "2020-09-24";
-in
-stdenv.mkDerivation {
-  name = "sbt-extras-${version}";
-  inherit version;
+stdenv.mkDerivation rec {
+  pname = "sbt-extras";
+  rev = "a36958f50bf8806c13f7c67ab0f13936e189351b";
+  version = "2020-11-08";
 
   src = fetchFromGitHub {
     owner = "paulp";
     repo = "sbt-extras";
     inherit rev;
-    sha256 = "1k6vknjjbhr5jfpiyh2yzayn2ziqi1bb862l1q2786q59161ij3j";
+    sha256 = "1xp5r7ia8r2nr4g76wp0mnh95d5ha0dblsqvgicq240dgc28360r";
   };
 
   dontBuild = true;
@@ -26,14 +25,53 @@ stdenv.mkDerivation {
 
     install bin/sbt $out/bin
 
-    wrapProgram $out/bin/sbt --prefix PATH : ${stdenv.lib.makeBinPath [ which curl ]}
+    wrapProgram $out/bin/sbt --prefix PATH : ${
+      stdenv.lib.makeBinPath [ which curl ]
+    }
   '';
 
+  passthru = {
+    tests = { inherit (nixosTests) sbt-extras; };
+
+    updateScript = writeScript "update.sh" ''
+      #!${stdenv.shell}
+      set -xo errexit
+      PATH=${
+        stdenv.lib.makeBinPath [
+          common-updater-scripts
+          curl
+          cacert
+          git
+          nixfmt
+          nix
+          jq
+          coreutils
+          gnused
+        ]
+      }
+
+      oldVersion="$(nix-instantiate --eval -E "with import ./. {}; lib.getVersion ${pname}" | tr -d '"')"
+      latestSha="$(curl -L -s https://api.github.com/repos/paulp/sbt-extras/commits\?sha\=master\&since\=$oldVersion | jq -r '.[0].sha')"
+
+      if [ ! "null" = "$latestSha" ]; then
+        nixpkgs="$(git rev-parse --show-toplevel)"
+        default_nix="$nixpkgs/pkgs/development/tools/build-managers/sbt-extras/default.nix"
+        latestDate="$(curl -L -s https://api.github.com/repos/paulp/sbt-extras/commits/$latestSha | jq '.commit.committer.date' | sed 's|"\(.*\)T.*|\1|g')"
+        update-source-version ${pname} "$latestSha" --version-key=rev
+        update-source-version ${pname} "$latestDate" --ignore-same-hash
+        nixfmt "$default_nix"
+      else
+        echo "${pname} is already up-to-date"
+      fi
+    '';
+  };
+
   meta = {
-    description = "A more featureful runner for sbt, the simple/scala/standard build tool";
+    description =
+      "A more featureful runner for sbt, the simple/scala/standard build tool";
     homepage = "https://github.com/paulp/sbt-extras";
     license = stdenv.lib.licenses.bsd3;
-    maintainers = with stdenv.lib.maintainers; [ puffnfresh ];
+    maintainers = with stdenv.lib.maintainers; [ nequissimus puffnfresh ];
     platforms = stdenv.lib.platforms.unix;
   };
 }