diff --git a/pkgs/applications/science/misc/snakemake/default.nix b/pkgs/by-name/sn/snakemake/package.nix
similarity index 100%
rename from pkgs/applications/science/misc/snakemake/default.nix
rename to pkgs/by-name/sn/snakemake/package.nix
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index d60050bd692d..8a6167bb202d 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -18389,8 +18389,6 @@ with pkgs;
 
   smc = callPackage ../tools/misc/smc { };
 
-  snakemake = callPackage ../applications/science/misc/snakemake { };
-
   snore = callPackage ../tools/misc/snore { };
 
   snzip = callPackage ../tools/archivers/snzip { };