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Merge pull request #173017 from trofi/workaround-fno-common-for-freebayes

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freebayes: add -fcommon workaround
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Bobby Rong 2022-05-22 13:39:14 +08:00 committed by GitHub
commit 3b468e68b7
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6
pkgs/applications/science/biology/freebayes/default.nix
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@ -15,6 +15,12 @@ stdenv.mkDerivation rec {
buildInputs = [ zlib bzip2 xz ];
# Workaround build failure on -fno-common toolchains like upstream
# gcc-10. Otherwise build fails as:
# ld: foomatic_rip-options.o:/build/foomatic-filters-4.0.17/options.c:49: multiple definition of `cupsfilter';
# foomatic_rip-foomaticrip.o:/build/foomatic-filters-4.0.17/foomaticrip.c:158: first defined here
NIX_CFLAGS_COMPILE = "-fcommon";
installPhase = ''
install -vD bin/freebayes bin/bamleftalign scripts/* -t $out/bin
'';