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libsbml: 5.20.2 -> 5.20.4 and add python support (#344137)

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Changelog: https://github.com/sbmlteam/libsbml/releases/tag/v5.20.4
This commit is contained in:
Simon Hauser 2024-09-30 09:24:52 +02:00 committed by GitHub
parent f08e2425f3
commit 3881e06a53
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GPG Key ID: B5690EEEBB952194
2 changed files with 18 additions and 16 deletions
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30
pkgs/by-name/li/libsbml/package.nix
View File

@ -2,43 +2,35 @@
lib,
stdenv,
fetchFromGitHub,
fetchpatch,
cmake,
pkg-config,
bzip2,
libxml2,
swig,
python ? null,
withPython ? false,
}:
stdenv.mkDerivation (attrs: {
pname = "libsbml";
version = "5.20.2";
version = "5.20.4";
src = fetchFromGitHub {
owner = "sbmlteam";
repo = "libsbml";
rev = "v${attrs.version}";
hash = "sha256-8JT2r0zuf61VewtZaOAccaOUmDlQPnllA0fXE9rT5X8=";
hash = "sha256-qWTN033YU4iWzt+mXQaP5W/6IF5nebF4PwNVkyL8wTg=";
};
patches = [
# This should be in next release, remember to remove fetchpatch
(fetchpatch { # https://github.com/sbmlteam/libsbml/pull/358
name = "fix-xmlerror-conversion.patch";
url = "https://github.com/sbmlteam/libsbml/commit/de2f77ee6766fe933a1472200f5e08e7c5ba6f8c.patch";
hash = "sha256-uirG6XJ+w0hqBUEAGDnzhHoVtJVRdN1eqBYeneKMBao=";
})
];
nativeBuildInputs = [
cmake
pkg-config
swig
];
] ++ lib.optional withPython python.pkgs.pythonImportsCheckHook;
buildInputs = [
bzip2.dev
libxml2
];
] ++ lib.optional withPython python;
# libSBML doesn't always make use of pkg-config
cmakeFlags = [
@ -46,13 +38,19 @@ stdenv.mkDerivation (attrs: {
"-DLIBXML_LIBRARY=${lib.getLib libxml2}/lib/libxml2${stdenv.hostPlatform.extensions.sharedLibrary}"
"-DPKG_CONFIG_EXECUTABLE=${lib.getBin pkg-config}/bin/pkg-config"
"-DSWIG_EXECUTABLE=${lib.getBin swig}/bin/swig"
];
] ++ lib.optional withPython "-DWITH_PYTHON=ON";
postInstall = lib.optional withPython ''
mv $out/${python.sitePackages}/libsbml/libsbml.py $out/${python.sitePackages}/libsbml/__init__.py
'';
pythonImportsCheck = [ "libsbml" ];
meta = with lib; {
description = "Library for manipulating Systems Biology Markup Language (SBML)";
homepage = "https://github.com/sbmlteam/libsbml";
license = licenses.lgpl21Only;
maintainers = [maintainers.kupac];
maintainers = [ maintainers.kupac ];
platforms = platforms.all;
};
})

4
pkgs/top-level/python-packages.nix
View File

@ -7132,6 +7132,10 @@ self: super: with self; {
libsavitar = callPackage ../development/python-modules/libsavitar { };
libsbml = toPythonModule (pkgs.libsbml.override {
withPython = true;
inherit (self) python;
});
libsixel = callPackage ../development/python-modules/libsixel {
inherit (pkgs) libsixel;