diff --git a/nixos/tests/slurm.nix b/nixos/tests/slurm.nix index a6b02e970b0c..ad516b6e8d2b 100644 --- a/nixos/tests/slurm.nix +++ b/nixos/tests/slurm.nix @@ -45,7 +45,7 @@ let ''; in pkgs.runCommand "mpitest" {} '' mkdir -p $out/bin - ${pkgs.openmpi}/bin/mpicc ${mpitestC} -o $out/bin/mpitest + ${lib.getDev pkgs.mpi}/bin/mpicc ${mpitestC} -o $out/bin/mpitest ''; in { name = "slurm"; diff --git a/pkgs/development/libraries/boost/generic.nix b/pkgs/development/libraries/boost/generic.nix index ad67806398f9..3db9b77bf05d 100644 --- a/pkgs/development/libraries/boost/generic.nix +++ b/pkgs/development/libraries/boost/generic.nix @@ -168,7 +168,7 @@ stdenv.mkDerivation { preConfigure = lib.optionalString useMpi '' cat << EOF >> user-config.jam - using mpi : ${mpi}/bin/mpiCC ; + using mpi : ${lib.getDev mpi}/bin/mpiCC ; EOF '' # On darwin we need to add the `$out/lib` to the libraries' rpath explicitly, diff --git a/pkgs/development/libraries/netcdf/default.nix b/pkgs/development/libraries/netcdf/default.nix index 8fde7050b97a..0796e7997d50 100644 --- a/pkgs/development/libraries/netcdf/default.nix +++ b/pkgs/development/libraries/netcdf/default.nix @@ -59,7 +59,7 @@ in stdenv.mkDerivation rec { "--disable-dap-remote-tests" "--with-plugin-dir=${placeholder "out"}/lib/hdf5-plugins" ] - ++ (lib.optionals mpiSupport [ "--enable-parallel-tests" "CC=${mpi}/bin/mpicc" ]); + ++ (lib.optionals mpiSupport [ "--enable-parallel-tests" "CC=${lib.getDev mpi}/bin/mpicc" ]); enableParallelBuilding = true; diff --git a/pkgs/development/libraries/openmpi/default.nix b/pkgs/development/libraries/openmpi/default.nix index a8bd8acacd59..8c54c13c9139 100644 --- a/pkgs/development/libraries/openmpi/default.nix +++ b/pkgs/development/libraries/openmpi/default.nix @@ -1,6 +1,6 @@ -{ lib, stdenv, fetchurl, gfortran, perl, libnl +{ lib, stdenv, fetchurl, removeReferencesTo, gfortran, perl, libnl , rdma-core, zlib, numactl, libevent, hwloc, targetPackages, symlinkJoin -, libpsm2, libfabric, pmix, ucx, ucc +, libpsm2, libfabric, pmix, ucx, ucc, makeWrapper , config # Enable CUDA support , cudaSupport ? config.cudaSupport, cudaPackages @@ -38,7 +38,7 @@ stdenv.mkDerivation rec { find -name "Makefile.in" -exec sed -i "s/\`date\`/$ts/" \{} \; ''; - outputs = [ "out" "man" ]; + outputs = [ "out" "man" "dev" ]; buildInputs = [ zlib ] ++ lib.optionals stdenv.isLinux [ libnl numactl pmix ucx ucc ] @@ -47,7 +47,7 @@ stdenv.mkDerivation rec { ++ lib.optional (stdenv.isLinux || stdenv.isFreeBSD) rdma-core ++ lib.optionals fabricSupport [ libpsm2 libfabric ]; - nativeBuildInputs = [ perl ] + nativeBuildInputs = [ perl removeReferencesTo makeWrapper ] ++ lib.optionals cudaSupport [ cudaPackages.cuda_nvcc ] ++ lib.optionals fortranSupport [ gfortran ]; @@ -71,24 +71,51 @@ stdenv.mkDerivation rec { postInstall = '' find $out/lib/ -name "*.la" -exec rm -f \{} \; + + for f in mpi shmem osh; do + for i in f77 f90 CC c++ cxx cc fort; do + moveToOutput "bin/$f$i" "''${!outputDev}" + echo "move $fi$i" + moveToOutput "share/openmpi/$f$i-wrapper-data.txt" "''${!outputDev}" + done + done + + for i in ortecc orte-info ompi_info oshmem_info opal_wrapper; do + moveToOutput "bin/$i" "''${!outputDev}" + done + + moveToOutput "share/openmpi/ortecc-wrapper-data.txt" "''${!outputDev}" ''; postFixup = '' + remove-references-to -t $dev $(readlink -f $out/lib/libopen-pal${stdenv.hostPlatform.extensions.sharedLibrary}) + remove-references-to -t $man $(readlink -f $out/lib/libopen-pal${stdenv.hostPlatform.extensions.sharedLibrary}) + + # The path to the wrapper is hard coded in libopen-pal.so, which we just cleared. + wrapProgram $dev/bin/opal_wrapper \ + --set OPAL_INCLUDEDIR $dev/include \ + --set OPAL_PKGDATADIR $dev/share/openmpi + # default compilers should be indentical to the # compilers at build time + echo "$dev/share/openmpi/mpicc-wrapper-data.txt" sed -i 's:compiler=.*:compiler=${targetPackages.stdenv.cc}/bin/${targetPackages.stdenv.cc.targetPrefix}cc:' \ - $out/share/openmpi/mpicc-wrapper-data.txt + $dev/share/openmpi/mpicc-wrapper-data.txt + echo "$dev/share/openmpi/ortecc-wrapper-data.txt" sed -i 's:compiler=.*:compiler=${targetPackages.stdenv.cc}/bin/${targetPackages.stdenv.cc.targetPrefix}cc:' \ - $out/share/openmpi/ortecc-wrapper-data.txt + $dev/share/openmpi/ortecc-wrapper-data.txt + echo "$dev/share/openmpi/mpic++-wrapper-data.txt" sed -i 's:compiler=.*:compiler=${targetPackages.stdenv.cc}/bin/${targetPackages.stdenv.cc.targetPrefix}c++:' \ - $out/share/openmpi/mpic++-wrapper-data.txt + $dev/share/openmpi/mpic++-wrapper-data.txt '' + lib.optionalString fortranSupport '' + echo "$dev/share/openmpi/mpifort-wrapper-data.txt" sed -i 's:compiler=.*:compiler=${gfortran}/bin/${gfortran.targetPrefix}gfortran:' \ - $out/share/openmpi/mpifort-wrapper-data.txt + $dev/share/openmpi/mpifort-wrapper-data.txt + ''; doCheck = true; diff --git a/pkgs/development/libraries/science/chemistry/libvdwxc/default.nix b/pkgs/development/libraries/science/chemistry/libvdwxc/default.nix index f90cad4a099f..c0da65e7c788 100644 --- a/pkgs/development/libraries/science/chemistry/libvdwxc/default.nix +++ b/pkgs/development/libraries/science/chemistry/libvdwxc/default.nix @@ -28,7 +28,7 @@ stdenv.mkDerivation rec { export PATH=$PATH:${mpi}/bin configureFlagsArray+=( - --with-mpi=${mpi} + --with-mpi=${lib.getDev mpi} CC=mpicc FC=mpif90 MPICC=mpicc diff --git a/pkgs/development/libraries/science/math/scalapack/default.nix b/pkgs/development/libraries/science/math/scalapack/default.nix index 81bcec504473..85aa5c4a8736 100644 --- a/pkgs/development/libraries/science/math/scalapack/default.nix +++ b/pkgs/development/libraries/science/math/scalapack/default.nix @@ -51,7 +51,7 @@ stdenv.mkDerivation rec { -DBUILD_SHARED_LIBS=ON -DBUILD_STATIC_LIBS=OFF -DLAPACK_LIBRARIES="-llapack" -DBLAS_LIBRARIES="-lblas" - -DCMAKE_Fortran_COMPILER=${mpi}/bin/mpif90 + -DCMAKE_Fortran_COMPILER=${lib.getDev mpi}/bin/mpif90 ${lib.optionalString passthru.isILP64 '' -DCMAKE_Fortran_FLAGS="-fdefault-integer-8" -DCMAKE_C_FLAGS="-DInt=long" diff --git a/pkgs/development/python-modules/gpaw/default.nix b/pkgs/development/python-modules/gpaw/default.nix index be43eb55857d..37b12c6f5ed4 100644 --- a/pkgs/development/python-modules/gpaw/default.nix +++ b/pkgs/development/python-modules/gpaw/default.nix @@ -29,8 +29,8 @@ let text = '' # Compiler compiler = 'gcc' - mpicompiler = '${mpi}/bin/mpicc' - mpilinker = '${mpi}/bin/mpicc' + mpicompiler = '${lib.getDev mpi}/bin/mpicc' + mpilinker = '${lib.getDev mpi}/bin/mpicc' # BLAS libraries += ['blas'] diff --git a/pkgs/development/python-modules/h5py/default.nix b/pkgs/development/python-modules/h5py/default.nix index fc30a7536a33..a11578f832ba 100644 --- a/pkgs/development/python-modules/h5py/default.nix +++ b/pkgs/development/python-modules/h5py/default.nix @@ -47,7 +47,7 @@ in buildPythonPackage rec { ${lib.optionalString mpiSupport "export OMPI_MCA_rmaps_base_oversubscribe=yes"} ''; - preBuild = lib.optionalString mpiSupport "export CC=${mpi}/bin/mpicc"; + preBuild = lib.optionalString mpiSupport "export CC=${lib.getDev mpi}/bin/mpicc"; nativeBuildInputs = [ cython diff --git a/pkgs/development/python-modules/mpi4py/default.nix b/pkgs/development/python-modules/mpi4py/default.nix index deb54ab149be..b5f4e403ab38 100644 --- a/pkgs/development/python-modules/mpi4py/default.nix +++ b/pkgs/development/python-modules/mpi4py/default.nix @@ -38,8 +38,6 @@ buildPythonPackage rec { # work as expected ''; - setupPyBuildFlags = ["--mpicc=${mpi}/bin/mpicc"]; - nativeBuildInputs = [ mpi ]; __darwinAllowLocalNetworking = true; diff --git a/pkgs/tools/misc/hdf5/default.nix b/pkgs/tools/misc/hdf5/default.nix index 89702cfd1a7f..ba00746c08f9 100644 --- a/pkgs/tools/misc/hdf5/default.nix +++ b/pkgs/tools/misc/hdf5/default.nix @@ -76,7 +76,7 @@ stdenv.mkDerivation rec { ++ lib.optional cppSupport "-DHDF5_BUILD_CPP_LIB=ON" ++ lib.optional fortranSupport "-DHDF5_BUILD_FORTRAN=ON" ++ lib.optional szipSupport "-DHDF5_ENABLE_SZIP_SUPPORT=ON" - ++ lib.optionals mpiSupport [ "-DHDF5_ENABLE_PARALLEL=ON" "CC=${mpi}/bin/mpicc" ] + ++ lib.optionals mpiSupport [ "-DHDF5_ENABLE_PARALLEL=ON" ] ++ lib.optional enableShared "-DBUILD_SHARED_LIBS=ON" ++ lib.optional javaSupport "-DHDF5_BUILD_JAVA=ON" ++ lib.optional usev110Api "-DDEFAULT_API_VERSION=v110"