Merge branch 'master' into staging-next

doc/languages-frameworks/node.section.md

@@ -25,12 +25,13 @@ build system it uses. Here are some examples:
 
 After you have identified the correct system, you need to override your package
 expression while adding in build system as a build input. For example, `dat`
-requires `node-gyp-build`, so we override its expression in `default.nix`:
+requires `node-gyp-build`, so [we override](https://github.com/NixOS/nixpkgs/blob/32f5e5da4a1b3f0595527f5195ac3a91451e9b56/pkgs/development/node-packages/default.nix#L37-L40) its expression in [`default.nix`](https://github.com/NixOS/nixpkgs/blob/master/pkgs/development/node-packages/default.nix):
 
 ```nix
-dat = nodePackages.dat.override (oldAttrs: {
-  buildInputs = oldAttrs.buildInputs ++ [ nodePackages.node-gyp-build ];
-});
+    dat = super.dat.override {
+      buildInputs = [ self.node-gyp-build pkgs.libtool pkgs.autoconf pkgs.automake ];
+      meta.broken = since "12";
+    };
 ```
 
 To add a package from NPM to nixpkgs:

pkgs/applications/audio/hydrogen/0.nix

@@ -0,0 +1,26 @@
+{ stdenv, fetchurl, pkgconfig, cmake
+, alsaLib, boost, glib, lash, libjack2, libarchive, libsndfile, lrdf, qt4
+}:
+
+stdenv.mkDerivation rec {
+  version = "0.9.7";
+  pname = "hydrogen";
+
+  src = fetchurl {
+    url = "https://github.com/hydrogen-music/hydrogen/archive/${version}.tar.gz";
+    sha256 = "1dy2jfkdw0nchars4xi4isrz66fqn53a9qk13bqza7lhmsg3s3qy";
+  };
+
+  nativeBuildInputs = [ pkgconfig cmake ];
+  buildInputs = [
+    alsaLib boost glib lash libjack2 libarchive libsndfile lrdf qt4
+  ];
+
+  meta = with stdenv.lib; {
+    description = "Advanced drum machine";
+    homepage = "http://www.hydrogen-music.org";
+    license = licenses.gpl2;
+    platforms = platforms.linux;
+    maintainers = [ maintainers.goibhniu ];
+  };
+}

pkgs/applications/audio/hydrogen/default.nix

@@ -1,19 +1,27 @@
-{ stdenv, fetchurl, pkgconfig, cmake
-, alsaLib, boost, glib, lash, libjack2, libarchive, libsndfile, lrdf, qt4
+{ stdenv, fetchFromGitHub, cmake, pkgconfig, wrapQtAppsHook
+, alsaLib, ladspa-sdk, lash, libarchive, libjack2, liblo, libpulseaudio, libsndfile, lrdf
+, qtbase, qttools, qtxmlpatterns
 }:
 
 stdenv.mkDerivation rec {
-  version = "0.9.7";
   pname = "hydrogen";
+  version = "1.0.1";
 
-  src = fetchurl {
-    url = "https://github.com/hydrogen-music/hydrogen/archive/${version}.tar.gz";
-    sha256 = "1dy2jfkdw0nchars4xi4isrz66fqn53a9qk13bqza7lhmsg3s3qy";
+  src = fetchFromGitHub {
+    owner = "hydrogen-music";
+    repo = pname;
+    rev = version;
+    sha256 = "0snljpvbcgikhz610c325dgvayi0k512p3bglck9vvi90wsqx7l1";
   };
 
-  nativeBuildInputs = [ pkgconfig cmake ];
+  nativeBuildInputs = [ cmake pkgconfig wrapQtAppsHook ];
   buildInputs = [
-    alsaLib boost glib lash libjack2 libarchive libsndfile lrdf qt4
+    alsaLib ladspa-sdk lash libarchive libjack2 liblo libpulseaudio libsndfile lrdf
+    qtbase qttools qtxmlpatterns
+  ];
+
+  cmakeFlags = [
+    "-DWANT_DEBUG=OFF"
   ];
 
   meta = with stdenv.lib; {
@@ -21,6 +29,6 @@ stdenv.mkDerivation rec {
     homepage = "http://www.hydrogen-music.org";
     license = licenses.gpl2;
     platforms = platforms.linux;
-    maintainers = [ maintainers.goibhniu ];
+    maintainers = with maintainers; [ goibhniu orivej ];
   };
 }

pkgs/applications/audio/hydrogen/unstable.nix

@@ -1,34 +0,0 @@
-{ stdenv, fetchFromGitHub, cmake, pkgconfig, wrapQtAppsHook
-, alsaLib, ladspa-sdk, lash, libarchive, libjack2, liblo, libpulseaudio, libsndfile, lrdf
-, qtbase, qttools, qtxmlpatterns
-}:
-
-stdenv.mkDerivation rec {
-  pname = "hydrogen";
-  version = "1.0.0-beta2";
-
-  src = fetchFromGitHub {
-    owner = "hydrogen-music";
-    repo = pname;
-    rev = version;
-    sha256 = "1s3jrdyjpm92flw9mkkxchnj0wz8nn1y1kifii8ws252iiqjya4a";
-  };
-
-  nativeBuildInputs = [ cmake pkgconfig wrapQtAppsHook ];
-  buildInputs = [
-    alsaLib ladspa-sdk lash libarchive libjack2 liblo libpulseaudio libsndfile lrdf
-    qtbase qttools qtxmlpatterns
-  ];
-
-  cmakeFlags = [
-    "-DWANT_DEBUG=OFF"
-  ];
-
-  meta = with stdenv.lib; {
-    description = "Advanced drum machine";
-    homepage = "http://www.hydrogen-music.org";
-    license = licenses.gpl2;
-    platforms = platforms.linux;
-    maintainers = with maintainers; [ goibhniu orivej ];
-  };
-}

pkgs/applications/blockchains/wasabibackend/default.nix

@@ -35,7 +35,7 @@ let
   };
 
   pname = "WasabiBackend";
-  version = "1.1.11.1";
+  version = "1.1.12";
 
   projectName = "WalletWasabi.Backend";
   projectConfiguration = "Release";
@@ -49,7 +49,7 @@ stdenv.mkDerivation rec {
     owner = "zkSNACKs";
     repo = "WalletWasabi";
     rev = "v${version}";
-    sha256 = "0kxww8ywhld00b0qsv5jh5s19jqpahnb9mvshmjnp3cb840j12a7";
+    sha256 = "001k43z2jxvs03csyzndlzlk034aclzc4n8ddrqxykgrq508xk1d";
   };
 
   buildInputs = [

pkgs/applications/graphics/meshlab/default.nix

@@ -1,4 +1,6 @@
-{ mkDerivation, lib, fetchFromGitHub
+{ mkDerivation
+, lib
+, fetchFromGitHub
 , fetchpatch
 , libGLU
 , qtbase
@@ -17,13 +19,13 @@
 
 mkDerivation rec {
   pname = "meshlab";
-  version = "2020.03";
+  version = "2020.07";
 
   src = fetchFromGitHub {
     owner = "cnr-isti-vclab";
     repo = "meshlab";
-    rev = "f3568e75c9aed6da8bb105a1c8ac7ebbe00e4536";
-    sha256 = "17g9icgy1w67afxiljzxk94dyhj4f336gjxn0bhppd58xfqh8w4g";
+    rev = "Meshlab-${version}";
+    sha256 = "0vj849b57zk3k6lx35zzcjhr9gdy4hxqnnkb8chwy7hw262cm3ri";
     fetchSubmodules = true; # for vcglib
   };
 
@@ -44,12 +46,13 @@ mkDerivation rec {
 
   nativeBuildInputs = [ cmake ];
 
-  patches = [ ./no-build-date.patch ];
-
-  # MeshLab computes the version based on the build date, remove when https://github.com/cnr-isti-vclab/meshlab/issues/622 is fixed.
-  postPatch = ''
-    substituteAll ${./fix-version.patch} /dev/stdout | patch -p1 --binary
-  '';
+  patches = [
+    # Make cmake use the system qhull. The next meshlab will not need this patch because it is already in master.
+    (fetchpatch {
+      url = "https://patch-diff.githubusercontent.com/raw/cnr-isti-vclab/meshlab/pull/747.patch";
+      sha256 = "0wx9f6zn458xz3lsqcgvsbwh1pgi3g0lah93nlbsb0sagng7n565";
+    })
+  ];
 
   preConfigure = ''
     substituteAll ${./meshlab.desktop} install/linux/resources/meshlab.desktop
@@ -62,7 +65,7 @@ mkDerivation rec {
     "-DALLOW_BUNDLED_LIB3DS=OFF"
     "-DALLOW_BUNDLED_MUPARSER=OFF"
     "-DALLOW_BUNDLED_QHULL=OFF"
-     # disable when available in nixpkgs
+    # disable when available in nixpkgs
     "-DALLOW_BUNDLED_OPENCTM=ON"
     "-DALLOW_BUNDLED_SSYNTH=ON"
     # some plugins are disabled unless these are on
@@ -70,6 +73,11 @@ mkDerivation rec {
     "-DALLOW_BUNDLED_LEVMAR=ON"
   ];
 
+  postFixup = ''
+    patchelf --add-needed $out/lib/meshlab/libmeshlab-common.so $out/bin/.meshlab-wrapped
+    patchelf --add-needed $out/lib/meshlab/libmeshlab-common.so $out/bin/.meshlabserver-wrapped
+  '';
+
   # Meshlab is not format-security clean; without disabling hardening, we get:
   # src/common/GLLogStream.h:61:37: error: format not a string literal and no format arguments [-Werror=format-security]
   #  61 |         int chars_written = snprintf(buf, buf_size, f, std::forward<Ts>(ts)...);
@@ -82,7 +90,7 @@ mkDerivation rec {
     description = "A system for processing and editing 3D triangular meshes.";
     homepage = "http://www.meshlab.net/";
     license = lib.licenses.gpl3;
-    maintainers = with lib.maintainers; [viric];
+    maintainers = with lib.maintainers; [ viric ];
     platforms = with lib.platforms; linux;
   };
 }

pkgs/applications/graphics/meshlab/fix-version.patch

@@ -1,5 +0,0 @@
---- a/src/common/mlapplication.h
-+++ b/src/common/mlapplication.h
-@@ -23 +23 @@ public:
--        return QString::number(compileTimeYear()) + "." + (compileTimeMonth() < 10 ? "0" + QString::number(compileTimeMonth()) : QString::number(compileTimeMonth()));
-+        return "@version@";

pkgs/applications/graphics/meshlab/meshlab.desktop

@@ -10,6 +10,5 @@ Exec=@out@/bin/meshlab %U
 TryExec=@out@/bin/meshlab
 Icon=@out@/share/icons/hicolor/meshlab.png
 Terminal=false
-MimeType=model/mesh;application/x-3ds;image/x-3ds;application/sla;
+MimeType=model/mesh;application/x-3ds;image/x-3ds;model/x-ply;application/sla;model/x-quad-object;model/x-geomview-off;application/x-cyclone-ptx;application/x-vmi;application/x-bre;model/vnd.collada+xml;model/openctm;application/x-expe-binary;application/x-expe-ascii;application/x-xyz;application/x-gts;chemical/x-pdb;application/x-tri;application/x-asc;model/x3d+xml;model/x3d+vrml;model/vrml;model/u3d;model/idtf;
 Categories=Graphics;3DGraphics;Viewer;Qt;
-END_DESKTOP

pkgs/applications/graphics/meshlab/no-build-date.patch

@@ -1,10 +0,0 @@
---- a/src/meshlab/mainwindow_RunTime.cpp
-+++ b/src/meshlab/mainwindow_RunTime.cpp
-@@ -3312 +3312 @@ void MainWindow::about()
--    temp.labelMLName->setText(MeshLabApplication::completeName(MeshLabApplication::HW_ARCHITECTURE(QSysInfo::WordSize))+"   (built on "+__DATE__+")");
-+    temp.labelMLName->setText(MeshLabApplication::completeName(MeshLabApplication::HW_ARCHITECTURE(QSysInfo::WordSize)));
---- a/src/meshlabplugins/filter_plymc/plymc_main.cpp
-+++ b/src/meshlabplugins/filter_plymc/plymc_main.cpp
-@@ -121 +121 @@ int main(int argc, char *argv[])
--  printf(   "\n                  PlyMC "_PLYMC_VER" ("__DATE__")\n"
-+  printf(   "\n                  PlyMC "_PLYMC_VER"\n"

pkgs/applications/video/catt/default.nix

@@ -1,12 +1,19 @@
-{ buildPythonApplication, fetchPypi, lib
-, youtube-dl
-, PyChromecast
-, click
-, ifaddr
-, requests
-}:
+{ lib, python3 }:
 
-buildPythonApplication rec {
+let
+  py = python3.override {
+    packageOverrides = self: super: {
+      PyChromecast = super.PyChromecast.overridePythonAttrs (oldAttrs: rec {
+        version = "6.0.0";
+        src = oldAttrs.src.override {
+          inherit version;
+          sha256 = "05f8r3b2pdqbl76hwi5sv2xdi1r7g9lgm69x8ja5g22mn7ysmghm";
+        };
+      });
+    };
+  };
+
+in with py.pkgs; buildPythonApplication rec {
   pname = "catt";
   version = "0.11.0";
 

pkgs/development/haskell-modules/configuration-common.nix

@@ -212,7 +212,7 @@ self: super: {
     # https://github.com/haskell-nix/hnix/issues/676
     # Once neat-interpolation >= 0.4 is in our stack release,
     # (which should happen soon), we can remove this override
-    neat-interpolation = self.neat-interpolation_0_5_1_1;
+    neat-interpolation = self.neat-interpolation_0_5_1_2;
   });
 
   # Fails for non-obvious reasons while attempting to use doctest.
@@ -1017,11 +1017,6 @@ self: super: {
     })];
   });
 
-  # 2020-06-05: HACK: In Nixpkgs currently this is
-  # old pandoc version 2.7.4 to current 2.9.2.1,
-  # test suite failures: https://github.com/jgm/pandoc/issues/5582
-  pandoc = dontCheck super.pandoc;
-
   # Fix build with attr-2.4.48 (see #53716)
   xattr = appendPatch super.xattr ./patches/xattr-fix-build.patch;
 
@@ -1214,7 +1209,15 @@ self: super: {
 
   # this will probably need to get updated with every ghcide update,
   # we need an override because ghcide is tracking haskell-lsp closely.
-  ghcide = dontCheck (super.ghcide.override { ghc-check = self.ghc-check_0_3_0_1; });
+  ghcide = dontCheck (appendPatch (super.ghcide.override {
+    hie-bios = dontCheck super.hie-bios_0_7_1;
+    lsp-test = dontCheck self.lsp-test_0_11_0_4;
+  }) (pkgs.fetchpatch {
+    # This patch loosens the hie-bios upper bound.
+    # It is already merged into upstream and won‘t be needed for ghcide 0.4.0
+    url = "https://github.com/haskell/ghcide/commit/3e1b3620948870a4da8808ca0c0897fbd3ecad16.patch";
+    sha256 = "1jwn7jgi740x6wwv1k0mz9d4z0b9p3mzs54pdg4nfq0h2v7zxchz";
+  }));
 
   # hasn‘t bumped upper bounds
   # upstream: https://github.com/obsidiansystems/which/pull/6
@@ -1236,13 +1239,6 @@ self: super: {
   x509-validation = dontCheck super.x509-validation;
   tls = dontCheck super.tls;
 
-  # Upstream PR: https://github.com/bgamari/monoidal-containers/pull/62
-  # Bump these version bound
-  monoidal-containers = appendPatch super.monoidal-containers (pkgs.fetchpatch {
-    url = "https://github.com/bgamari/monoidal-containers/commit/715093b22a015398a1390f636be6f39a0de83254.patch";
-    sha256="1lfxvwp8g55ljxvj50acsb0wjhrvp2hvir8y0j5pfjkd1kq628ng";
-  });
-
   patch = appendPatches super.patch [
     # Upstream PR: https://github.com/reflex-frp/patch/pull/20
     # Makes tests work with hlint 3
@@ -1385,43 +1381,51 @@ self: super: {
   # https://github.com/jgm/commonmark-hs/issues/55
   commonmark-extensions = dontCheck super.commonmark-extensions;
 
-  # The overrides in the following lines all have the following causes:
-  # * neuron needs commonmark-pandoc
-  # * which needs a newer pandoc-types (>= 1.21)
-  # * which means we need a newer pandoc (>= 2.10)
-  # * which needs a newer hslua (1.1.2) and a newer jira-wiki-markup (1.3.2)
-  # Then we need to apply those overrides to all transitive dependencies
-  # All of this will be obsolete, when pandoc 2.10 hits stack lts.
-  commonmark-pandoc = super.commonmark-pandoc.override {
-    pandoc-types = self.pandoc-types_1_21;
-  };
-  reflex-dom-pandoc = super.reflex-dom-pandoc.override {
-    pandoc-types = self.pandoc-types_1_21;
-  };
-  pandoc_2_10_1 = super.pandoc_2_10_1.overrideScope (self: super: {
-    pandoc-types = self.pandoc-types_1_21;
-    hslua = self.hslua_1_1_2;
-    jira-wiki-markup = self.jira-wiki-markup_1_3_2;
-  });
-
   # Apply version-bump patch that is not contained in released version yet.
   # Upstream PR: https://github.com/srid/neuron/pull/304
-  neuron = (appendPatch super.neuron (pkgs.fetchpatch {
+  neuron = appendPatch super.neuron (pkgs.fetchpatch {
     url= "https://github.com/srid/neuron/commit/9ddcb7e9d63b8266d1372ef7c14c13b6b5277990.patch";
     sha256 = "01f9v3jnl05fnpd624wv3a0j5prcbnf62ysa16fbc0vabw19zv1b";
     excludes = [ "commonmark-hs/github.json" ];
     stripLen = 2;
     extraPrefix = "";
-  }))
-    # See comment about overrides above commonmark-pandoc
-    .overrideScope (self: super: {
-    pandoc = self.pandoc_2_10_1;
-    pandoc-types = self.pandoc-types_1_21;
   });
 
   # Testsuite trying to run `which haskeline-examples-Test`
   haskeline_0_8_1_0 = dontCheck super.haskeline_0_8_1_0;
 
+  # Tests for list-t, superbuffer, and stm-containers
+  # depend on HTF and it is broken, 2020-08-23
+  list-t = dontCheck super.list-t;
+  superbuffer = dontCheck super.superbuffer;
+  stm-containers = dontCheck super.stm-containers;
+
+  # Fails with "supports custom headers"
+  Spock-core = dontCheck super.Spock-core;
+
+  # Needed by Hasura  1.3.1
+  dependent-map_0_2_4_0 = super.dependent-map_0_2_4_0.override {
+    dependent-sum = self.dependent-sum_0_4;
+  };
+
+  # Hasura 1.3.1
+  # Because of ghc-heap-view, profiling needs to be disabled.
+  graphql-engine = disableLibraryProfiling( overrideCabal (super.graphql-engine.override {
+     immortal = self.immortal_0_2_2_1;
+     dependent-map = self.dependent-map_0_2_4_0;
+     dependent-sum = self.dependent-sum_0_4;
+     witherable = self.witherable_0_3_2;
+  }) (drv: {
+     # version in cabal file is invalid
+     version = "1.3.1-beta1";
+     # hasura needs VERSION env exported during build
+     preBuild = "export VERSION=1.3.1-beta1";
+  }));
+
+  graphql-parser = super.graphql-parser.override {
+     protolude = self.protolude_0_3_0;
+  };
+
   # Requires repline 0.4 which is the default only for ghc8101, override for the rest
   zre = super.zre.override {
     repline = self.repline_0_4_0_0.override {
@@ -1457,15 +1461,25 @@ self: super: {
   # resolving https://github.com/NixOS/nixpkgs/issues/81915.
   cryptonite = self.cryptonite_0_27;
 
+  # We want the latest version of Pandoc.
+  hslua = self.hslua_1_1_2;
+  jira-wiki-markup = self.jira-wiki-markup_1_3_2;
+  pandoc = self.pandoc_2_10_1;
+  pandoc-citeproc = self.pandoc-citeproc_0_17_0_2;
+  pandoc-plot = self.pandoc-plot_0_9_2_0;
+  pandoc-types = self.pandoc-types_1_21;
+  rfc5051 = self.rfc5051_0_2;
+
   # INSERT NEW OVERRIDES ABOVE THIS LINE
 
 } // (let
+  inherit (self) hls-ghcide;
   hlsScopeOverride = self: super: {
     # haskell-language-server uses its own fork of ghcide
     # Test disabled: it seems to freeze (is it just that it takes a long time ?)
-    ghcide = dontCheck super.hls-ghcide;
+    ghcide = hls-ghcide;
     # we are faster than stack here
-    hie-bios = dontCheck super.hie-bios_0_7_0;
+    hie-bios = dontCheck super.hie-bios_0_7_1;
     lsp-test = dontCheck super.lsp-test_0_11_0_4;
     # fourmolu can‘t compile with an older aeson
     aeson = dontCheck super.aeson_1_5_2_0;
@@ -1475,7 +1489,13 @@ self: super: {
   in {
     # jailbreaking for hie-bios 0.7.0 (upstream PR: https://github.com/haskell/haskell-language-server/pull/357)
     haskell-language-server = dontCheck (doJailbreak (super.haskell-language-server.overrideScope hlsScopeOverride));
-    hls-ghcide = dontCheck (super.hls-ghcide.overrideScope hlsScopeOverride);
+    hls-ghcide = appendPatch (dontCheck (super.hls-ghcide.overrideScope hlsScopeOverride))
+      (pkgs.fetchpatch {
+        # This patch loosens the hie-bios upper bound.
+        # It is already merged into upstream and won‘t be needed for ghcide 0.4.0
+        url = "https://github.com/haskell/ghcide/commit/3e1b3620948870a4da8808ca0c0897fbd3ecad16.patch";
+        sha256 = "1jwn7jgi740x6wwv1k0mz9d4z0b9p3mzs54pdg4nfq0h2v7zxchz";
+      });
     fourmolu = super.fourmolu.overrideScope hlsScopeOverride;
   }
 )  // import ./configuration-tensorflow.nix {inherit pkgs haskellLib;} self super

pkgs/development/haskell-modules/configuration-ghc-8.10.x.nix

@@ -76,6 +76,16 @@ self: super: {
   singletons = self.singletons_2_7;
   th-desugar = self.th-desugar_1_11;
 
+  insert-ordered-containers = super.insert-ordered-containers.override {
+    optics-core = self.optics-core_0_3_0_1;
+    optics-extra = self.optics-extra_0_3.override {
+      optics-core = self.optics-core_0_3_0_1;
+    };
+  };
+
+  # Jailbreaking because monoidal-containers hasn‘t bumped it's base dependency for 8.10.
+  monoidal-containers = doJailbreak super.monoidal-containers;
+
   # `ghc-lib-parser-ex` (see conditionals in its `.cabal` file) does not need
   # the `ghc-lib-parser` dependency on GHC >= 8.8. However, because we have
   # multiple verions of `ghc-lib-parser(-ex)` available, and the default ones
@@ -119,10 +129,4 @@ self: super: {
       executableHaskellDepends = drv.executableToolDepends or [] ++ [ self.repline ];
     }));
 
-  # We want the latest version of Pandoc.
-  pandoc = self.pandoc_2_10_1;
-  pandoc-citeproc = self.pandoc-citeproc_0_17_0_2;
-  pandoc-plot = self.pandoc-plot_0_9_2_0;
-  pandoc-types = self.pandoc-types_1_21;
-
 }

pkgs/development/haskell-modules/configuration-ghc-8.8.x.nix

@@ -41,6 +41,13 @@ self: super: {
   unix = null;
   xhtml = null;
 
+  # Hasura 1.3.1
+  # Because of ghc-heap-view, profiling needs to be disabled.
+  graphql-engine = overrideCabal (super.graphql-engine) (drv: {
+     # GHC 8.8.x needs a revert of https://github.com/hasura/graphql-engine/commit/a77bb0570f4210fb826985e17a84ddcc4c95d3ea
+     patches = [ ./patches/hasura-884-compat.patch ];
+  });
+
   # GHC 8.8.x can build haddock version 2.23.*
   haddock = self.haddock_2_23_1;
   haddock-api = self.haddock-api_2_23_1;
@@ -107,4 +114,16 @@ self: super: {
   # cabal-fmt requires Cabal3
   cabal-fmt = super.cabal-fmt.override { Cabal = self.Cabal_3_2_0_0; };
 
+  # liquidhaskell does not support ghc version 8.8.x.
+  liquid = markBroken super.liquid;
+  liquid-base = markBroken super.liquid-base;
+  liquid-bytestring = markBroken super.liquid-bytestring;
+  liquid-containers = markBroken super.liquid-containers;
+  liquid-ghc-prim = markBroken super.liquid-ghc-prim;
+  liquid-parallel = markBroken super.liquid-parallel;
+  liquid-platform = markBroken super.liquid-platform;
+  liquid-prelude = markBroken super.liquid-prelude;
+  liquid-vector = markBroken super.liquid-vector;
+  liquidhaskell = markBroken super.liquidhaskell;
+
 }

pkgs/development/haskell-modules/configuration-hackage2nix.yaml

@@ -72,7 +72,7 @@ default-package-overrides:
   # gi-gdkx11-4.x requires gtk-4.x, which is still under development and
   # not yet available in Nixpkgs
   - gi-gdkx11 < 4
-  # LTS Haskell 16.11
+  # LTS Haskell 16.12
   - abstract-deque ==0.3
   - abstract-par ==0.3.3
   - AC-Angle ==1.0
@@ -512,7 +512,7 @@ default-package-overrides:
   - constraints ==0.12
   - constraint-tuples ==0.1.2
   - contravariant ==1.5.2
-  - contravariant-extras ==0.3.5.1
+  - contravariant-extras ==0.3.5.2
   - control-bool ==0.2.1
   - control-monad-free ==0.6.2
   - control-monad-omega ==0.3.2
@@ -760,7 +760,7 @@ default-package-overrides:
   - extended-reals ==0.2.4.0
   - extensible-effects ==5.0.0.1
   - extensible-exceptions ==0.1.1.4
-  - extra ==1.7.6
+  - extra ==1.7.7
   - extractable-singleton ==0.0.1
   - extrapolate ==0.4.2
   - fail ==4.9.0.0
@@ -931,7 +931,7 @@ default-package-overrides:
   - gi-graphene ==1.0.1
   - gi-gtk ==3.0.33
   - gi-gtk-hs ==0.3.8.1
-  - ginger ==0.10.0.5
+  - ginger ==0.10.1.0
   - gingersnap ==0.3.1.0
   - gi-pango ==1.0.22
   - giphy-api ==0.7.0.0
@@ -1190,7 +1190,7 @@ default-package-overrides:
   - ieee754 ==0.8.0
   - if ==0.1.0.0
   - iff ==0.0.6
-  - ihaskell ==0.10.1.1
+  - ihaskell ==0.10.1.2
   - ihs ==0.1.0.3
   - ilist ==0.4.0.1
   - imagesize-conduit ==1.1
@@ -1242,7 +1242,7 @@ default-package-overrides:
   - iproute ==1.7.9
   - IPv6Addr ==1.1.5
   - ipynb ==0.1.0.1
-  - ipython-kernel ==0.10.2.0
+  - ipython-kernel ==0.10.2.1
   - irc ==0.6.1.0
   - irc-client ==1.1.1.1
   - irc-conduit ==0.3.0.4
@@ -1369,7 +1369,7 @@ default-package-overrides:
   - logging ==3.0.5
   - logging-facade ==0.3.0
   - logging-facade-syslog ==1
-  - logict ==0.7.0.2
+  - logict ==0.7.0.3
   - loop ==0.3.0
   - loopbreaker ==0.1.1.1
   - lrucache ==1.2.0.1
@@ -1906,7 +1906,7 @@ default-package-overrides:
   - safe-exceptions-checked ==0.1.0
   - safe-foldable ==0.1.0.0
   - safeio ==0.0.5.0
-  - safe-json ==1.1.0
+  - safe-json ==1.1.1
   - safe-money ==0.9
   - SafeSemaphore ==0.10.1
   - salak ==0.3.6
@@ -1996,7 +1996,7 @@ default-package-overrides:
   - sexp-grammar ==2.1.0
   - SHA ==1.6.4.4
   - shake-plus ==0.1.10.0
-  - shakespeare ==2.0.24.1
+  - shakespeare ==2.0.25
   - shared-memory ==0.2.0.0
   - shell-conduit ==4.7.0
   - shell-escape ==0.2.0
@@ -2182,7 +2182,7 @@ default-package-overrides:
   - TCache ==0.12.1
   - tce-conf ==1.3
   - tdigest ==0.2.1
-  - template-haskell-compat-v0208 ==0.1.2.1
+  - template-haskell-compat-v0208 ==0.1.4
   - temporary ==1.3
   - temporary-rc ==1.2.0.3
   - temporary-resourcet ==0.1.0.1
@@ -2463,7 +2463,7 @@ default-package-overrides:
   - writer-cps-transformers ==0.5.6.1
   - wss-client ==0.3.0.0
   - wuss ==1.1.17
-  - X11 ==1.9.1
+  - X11 ==1.9.2
   - X11-xft ==0.3.1
   - x11-xim ==0.0.9.0
   - x509 ==1.7.5
@@ -2563,7 +2563,6 @@ extra-packages:
   - Diff < 0.4                          # required by liquidhaskell-0.8.10.2: https://github.com/ucsd-progsys/liquidhaskell/issues/1729
   - doctemplates == 0.8                 # required by pandoc-2.9.x
   - generic-deriving == 1.10.5.*        # new versions don't compile with GHC 7.10.x
-  - ghc-check == 0.3.0.1                # only version compatible with ghcide 0.2.0
   - ghc-tcplugins-extra ==0.3.2         # required for polysemy-plugin 0.2.5.0
   - gi-gdk == 3.0.23                    # required for gi-pango 1.0.23
   - gi-gtk == 3.0.35                    # required for gi-pango 1.0.23
@@ -2575,8 +2574,6 @@ extra-packages:
   - happy <1.19.6                       # newer versions break Agda
   - happy == 1.19.9                     # for purescript
   - haskell-gi-overloading == 0.0       # gi-* packages use this dependency to disable overloading support
-  - haskell-lsp == 0.22.*               # required for ghcide 0.2.0
-  - haskell-lsp-types == 0.22.*         # required for ghcide 0.2.0
   - haskell-src-exts == 1.19.*          # required by hindent and structured-haskell-mode
   - hinotify == 0.3.9                   # for xmonad-0.26: https://github.com/kolmodin/hinotify/issues/29
   - hoogle == 5.0.14                    # required by hie-hoogle
@@ -2617,6 +2614,13 @@ extra-packages:
   - yesod-persistent < 1.5              # pre-lts-11.x versions neeed by git-annex 6.20180227
   - yesod-static ^>= 1.5                # pre-lts-11.x versions neeed by git-annex 6.20180227
   - yesod-test ^>= 1.5                  # pre-lts-11.x versions neeed by git-annex 6.20180227
+  - immortal == 0.2.2.1                 # required by Hasura 1.3.1, 2020-08-20
+  - dependent-map == 0.2.4.0            # required by Hasura 1.3.1, 2020-08-20
+  - dependent-sum == 0.4                # required by Hasura 1.3.1, 2020-08-20
+  - witherable == 0.3.2                 # required by Hasura 1.3.1, 2020-08-20
+  - protolude == 0.3.0                  # required by Hasura 1.3.1, 2020-08-20
+  - optics-core == 0.3.0.1              # required by Hasura 1.3.1, 2020-08-20
+  - base-compat == 0.11.1              # required by Hasura 1.3.1, 2020-08-20
 
 package-maintainers:
   peti:
@@ -3912,6 +3916,7 @@ broken-packages:
   - codemonitor
   - codepad
   - codeworld-api
+  - codex
   - codo-notation
   - coin
   - coinbase-exchange
@@ -4086,6 +4091,7 @@ broken-packages:
   - Control-Monad-ST2
   - contstuff-monads-tf
   - contstuff-transformers
+  - conversions
   - convert
   - convert-annotation
   - convertible-ascii
@@ -4181,6 +4187,7 @@ broken-packages:
   - cryptocipher
   - cryptocompare
   - cryptoconditions
+  - cryptoids
   - cryptol
   - cryptsy-api
   - crystalfontz
@@ -4723,6 +4730,7 @@ broken-packages:
   - enchant
   - encoding
   - encoding-io
+  - encryptable
   - engine-io
   - engine-io-growler
   - engine-io-snap
@@ -4969,6 +4977,7 @@ broken-packages:
   - FileManip
   - FileManipCompat
   - fileneglect
+  - filepath-crypto
   - filepath-io-access
   - FilePather
   - filepather
@@ -5459,10 +5468,12 @@ broken-packages:
   - google-drive
   - google-html5-slide
   - google-mail-filters
+  - google-maps-geocoding
   - google-oauth2
   - google-oauth2-easy
   - google-search
   - google-server-api
+  - google-static-maps
   - google-translate
   - GoogleCodeJam
   - GoogleDirections
@@ -5655,18 +5666,25 @@ broken-packages:
   - hakismet
   - hakka
   - hako
+  - hakyll
   - hakyll-agda
   - hakyll-blaze-templates
   - hakyll-contrib
   - hakyll-contrib-csv
   - hakyll-contrib-elm
+  - hakyll-contrib-hyphenation
   - hakyll-contrib-links
   - hakyll-convert
+  - hakyll-dhall
   - hakyll-dir-list
+  - hakyll-favicon
   - hakyll-filestore
+  - hakyll-images
   - hakyll-ogmarkup
   - hakyll-R
+  - hakyll-sass
   - hakyll-series
+  - hakyll-shakespeare
   - hakyll-shortcode
   - hakyll-shortcut-links
   - hakyll-typescript
@@ -6228,6 +6246,7 @@ broken-packages:
   - HLogger
   - hlogger
   - hlongurl
+  - hlrdb
   - hls
   - hlwm
   - hly
@@ -6740,8 +6759,20 @@ broken-packages:
   - ignore
   - igraph
   - igrf
+  - ihaskell
+  - ihaskell-aeson
   - ihaskell-basic
+  - ihaskell-blaze
+  - ihaskell-charts
+  - ihaskell-diagrams
   - ihaskell-display
+  - ihaskell-gnuplot
+  - ihaskell-graphviz
+  - ihaskell-hatex
+  - ihaskell-hvega
+  - ihaskell-inline-r
+  - ihaskell-juicypixels
+  - ihaskell-magic
   - ihaskell-parsec
   - ihaskell-plot
   - ihaskell-rlangqq
@@ -7214,6 +7245,8 @@ broken-packages:
   - latest-npm-version
   - latex-formulae-hakyll
   - latex-formulae-pandoc
+  - latex-svg-hakyll
+  - latex-svg-pandoc
   - LATS
   - launchdarkly-server-sdk
   - launchpad-control
@@ -7368,7 +7401,6 @@ broken-packages:
   - list-mux
   - list-prompt
   - list-remote-forwards
-  - list-t
   - list-t-attoparsec
   - list-t-html-parser
   - list-t-http-client
@@ -7475,6 +7507,7 @@ broken-packages:
   - lp-diagrams
   - lp-diagrams-svg
   - LRU
+  - lrucaching-haxl
   - ls-usb
   - lscabal
   - LslPlus
@@ -8335,10 +8368,11 @@ broken-packages:
   - pam
   - pan-os-syslog
   - panda
-  - pandoc-crossref
+  - pandoc-csv2table
   - pandoc-emphasize-code
   - pandoc-filter-graphviz
   - pandoc-include
+  - pandoc-include-code
   - pandoc-japanese-filters
   - pandoc-lens
   - pandoc-markdown-ghci-filter
@@ -8348,6 +8382,7 @@ broken-packages:
   - pandoc-pyplot
   - pandoc-sidenote
   - pandoc-unlit
+  - pandoc-utils
   - PandocAgda
   - pang-a-lambda
   - pangraph
@@ -8640,6 +8675,7 @@ broken-packages:
   - polysemy-http
   - polysemy-optics
   - polysemy-RandomFu
+  - polysemy-test
   - polysemy-webserver
   - polysemy-zoo
   - polyseq
@@ -8741,8 +8777,9 @@ broken-packages:
   - prim
   - prim-array
   - prim-ref
+  - primal
+  - primal-memory
   - primes-type
-  - primitive-extras
   - primitive-indexed
   - primitive-maybe
   - primitive-simd
@@ -9042,6 +9079,7 @@ broken-packages:
   - redis-hs
   - redis-io
   - redis-simple
+  - rediscaching-haxl
   - redland
   - Redmine
   - reduce-equations
@@ -9393,6 +9431,7 @@ broken-packages:
   - scotty-fay
   - scotty-format
   - scotty-hastache
+  - scotty-haxl
   - scotty-resource
   - scotty-rest
   - scotty-session
@@ -9673,6 +9712,7 @@ broken-packages:
   - siphon
   - siren-json
   - sirkel
+  - sitepipe
   - sixfiguregroup
   - sized-grid
   - sized-types
@@ -9875,7 +9915,6 @@ broken-packages:
   - Spock-api-ghcjs
   - Spock-api-server
   - Spock-auth
-  - Spock-core
   - Spock-digestive
   - Spock-lucid
   - Spock-worker
@@ -9983,9 +10022,7 @@ broken-packages:
   - STL
   - STLinkUSB
   - stm-chunked-queues
-  - stm-containers
   - stm-firehose
-  - stm-hamt
   - stm-promise
   - stm-stats
   - stm-supply
@@ -10041,6 +10078,8 @@ broken-packages:
   - stripe-haskell
   - stripe-http-client
   - stripe-http-streams
+  - stripe-scotty
+  - stripe-signature
   - stripe-tests
   - strongswan-sql
   - structural-induction
@@ -10076,7 +10115,6 @@ broken-packages:
   - sunroof-server
   - super-user-spark
   - superbubbles
-  - superbuffer
   - supercollider-ht
   - supercollider-midi
   - superconstraints
@@ -10236,6 +10274,7 @@ broken-packages:
   - tellbot
   - tempi
   - template-default
+  - template-haskell-optics
   - template-haskell-util
   - template-hsml
   - template-yj
@@ -10384,6 +10423,7 @@ broken-packages:
   - timeseries
   - timespan
   - timeutils
+  - timezone-detect
   - timezone-olson-th
   - timezone-unix
   - tini
@@ -10734,6 +10774,7 @@ broken-packages:
   - uuagc-diagrams
   - uuid-aeson
   - uuid-bytes
+  - uuid-crypto
   - uvector
   - uvector-algorithms
   - uxadt

pkgs/development/haskell-modules/non-hackage-packages.nix

@@ -23,4 +23,13 @@ self: super: {
   # both are auto-generated by pkgs/development/tools/haskell/haskell-language-server/update.sh
   haskell-language-server = self.callPackage ../tools/haskell/haskell-language-server { };
   hls-ghcide = self.callPackage ../tools/haskell/haskell-language-server/hls-ghcide.nix { };
+
+  # cabal2nix --revision <rev> https://github.com/hasura/ci-info-hs.git
+  ci-info = self.callPackage ../misc/haskell/hasura/ci-info {};
+  # cabal2nix --revision <rev> https://github.com/hasura/pg-client-hs.git
+  pg-client = self.callPackage ../misc/haskell/hasura/pg-client {};
+  # cabal2nix --revision <rev> https://github.com/hasura/graphql-parser-hs.git
+  graphql-parser = self.callPackage ../misc/haskell/hasura/graphql-parser {};
+  # cabal2nix  --subpath server --maintainer offline --no-check --revision 1.2.1 https://github.com/hasura/graphql-engine.git
+  graphql-engine = self.callPackage ../misc/haskell/hasura/graphql-engine {};
 }

pkgs/development/haskell-modules/patches/hasura-884-compat.patch

@@ -0,0 +1,26 @@
+diff --git server/src-lib/Hasura/GraphQL/Transport/WebSocket/Server.hs server/src-lib/Hasura/GraphQL/Transport/WebSocket/Server.hs
+index 6cb70cf0..0c3789cd 100644
+--- server/src-lib/Hasura/GraphQL/Transport/WebSocket/Server.hs
++++ server/src-lib/Hasura/GraphQL/Transport/WebSocket/Server.hs
+@@ -45,7 +45,7 @@ import           GHC.AssertNF
+ import qualified ListT
+ import qualified Network.WebSockets                   as WS
+ import qualified StmContainers.Map                    as STMMap
+-import qualified System.IO.Error                      as E
++--import qualified System.IO.Error                      as E
+ 
+ import qualified Hasura.Logging                       as L
+ 
+@@ -287,12 +287,6 @@ createServerApp (WSServer logger@(L.Logger writeLog) serverStatus) wsHandlers !p
+           let rcv = forever $ do
+                 -- Process all messages serially (important!), in a separate thread:
+                 msg <- liftIO $ 
+-                  -- Re-throw "receiveloop: resource vanished (Connection reset by peer)" :
+-                  --   https://github.com/yesodweb/wai/blob/master/warp/Network/Wai/Handler/Warp/Recv.hs#L112 
+-                  -- as WS exception signaling cleanup below. It's not clear why exactly this gets 
+-                  -- raised occasionally; I suspect an equivalent handler is missing from WS itself.
+-                  -- Regardless this should be safe:
+-                  handleJust (guard . E.isResourceVanishedError) (\()-> throw WS.ConnectionClosed) $
+                     WS.receiveData conn
+                 writeLog $ WSLog wsId (EMessageReceived $ TBS.fromLBS msg) Nothing
+                 _hOnMessage wsHandlers wsConn msg

pkgs/development/libraries/exiv2/default.nix

@@ -15,22 +15,21 @@
 
 stdenv.mkDerivation rec {
   pname = "exiv2";
-  version = "0.27.2";
+  version = "0.27.3";
 
   src = fetchFromGitHub {
     owner = "exiv2";
     repo  = "exiv2";
     rev = "v${version}";
-    sha256 = "0n8il52yzbmvbkryrl8waz7hd9a2fdkw8zsrmhyh63jlvmmc31gf";
+    sha256 = "0d294yhcdw8ziybyd4rp5hzwknzik2sm0cz60ff7fljacv75bjpy";
   };
 
   patches = [
-    # included in next release
+    # Fix aarch64 build https://github.com/Exiv2/exiv2/pull/1271
     (fetchpatch {
-      name = "cve-2019-20421.patch";
-      url = "https://github.com/Exiv2/exiv2/commit/a82098f4f90cd86297131b5663c3dec6a34470e8.patch";
-      sha256 = "16r19qb9l5j43ixm5jqid9sdv5brlkk1wq0w79rm5agxq4kblfyc";
-      excludes = [ "tests/bugfixes/github/test_issue_1011.py" "test/data/Jp2Image_readMetadata_loop.poc" ];
+      name = "cmake-fix-aarch64.patch";
+      url = "https://github.com/Exiv2/exiv2/commit/bbe0b70840cf28b7dd8c0b7e9bb1b741aeda2efd.patch";
+      sha256 = "13zw1mn0ag0jrz73hqjhdsh1img7jvj5yddip2k2sb5phy04rzfx";
     })
   ];
 
@@ -40,6 +39,7 @@ stdenv.mkDerivation rec {
     # the cmake package does not handle absolute CMAKE_INSTALL_INCLUDEDIR correctly
     # (setting it to an absolute path causes include files to go to $out/$out/include,
     #  because the absolute path is interpreted with root at $out).
+    # Can probably be removed once https://github.com/Exiv2/exiv2/pull/1263 is merged.
     "-DCMAKE_INSTALL_INCLUDEDIR=include"
     "-DCMAKE_INSTALL_LIBDIR=lib"
   ];
@@ -77,7 +77,6 @@ stdenv.mkDerivation rec {
   preCheck = ''
     patchShebangs ../test/
     mkdir ../test/tmp
-    export LD_LIBRARY_PATH="$(realpath ../build/lib)"
 
     ${stdenv.lib.optionalString (stdenv.isAarch64 || stdenv.isAarch32) ''
       # Fix tests on arm
@@ -86,7 +85,6 @@ stdenv.mkDerivation rec {
     ''}
 
     ${stdenv.lib.optionalString stdenv.isDarwin ''
-      export DYLD_LIBRARY_PATH=$DYLD_LIBRARY_PATH''${DYLD_LIBRARY_PATH:+:}`pwd`/lib
       # Removing tests depending on charset conversion
       substituteInPlace ../test/Makefile --replace "conversions.sh" ""
       rm -f ../tests/bugfixes/redmine/test_issue_460.py
@@ -94,10 +92,6 @@ stdenv.mkDerivation rec {
      ''}
   '';
 
-  postCheck = ''
-    (cd ../tests/ && python3 runner.py)
-  '';
-
   # With CMake we have to enable samples or there won't be
   # a tests target. This removes them.
   postInstall = ''
@@ -108,7 +102,7 @@ stdenv.mkDerivation rec {
     )
   '';
 
-  # Fix CMake export paths.
+  # Fix CMake export paths. Can be removed once https://github.com/Exiv2/exiv2/pull/1263 is merged.
   postFixup = ''
     sed -i "$dev/lib/cmake/exiv2/exiv2Config.cmake" \
         -e "/INTERFACE_INCLUDE_DIRECTORIES/ s@\''${_IMPORT_PREFIX}@$dev@" \

pkgs/development/misc/haskell/hasura/graphql-engine/default.nix

@@ -17,18 +17,18 @@
 , text-builder, text-conversions, th-lift-instances, these, time
 , transformers, transformers-base, unix, unordered-containers
 , uri-encode, uuid, vector, wai, wai-websockets, warp, websockets
-, wreq, x509, yaml, zlib
+, wreq, x509, yaml, zlib, witherable, semialign, validation, cron
 }:
 mkDerivation {
   pname = "graphql-engine";
   version = "1.0.0";
   src = fetchgit {
     url = "https://github.com/hasura/graphql-engine.git";
-    sha256 = "0hg44zl3gqa8lq7kggwgmgbsgdc7zrv5cxs507vilg11xklsbz4l";
-    rev = "27b0b59361cebecd074bd59123f602e7b013bac1";
+    sha256 = "sha256-tNKoi3dtoXj0nn4qBgLBroo7SgX7SdVaHtBqjs1S3hQ=";
+    rev = "1e3eb035d3c915032ba23e502bcb0132b4d54202";
     fetchSubmodules = true;
   };
-  postUnpack = "sourceRoot+=/server; echo source root reset to $sourceRoot";
+ postUnpack = "sourceRoot+=/server; echo source root reset to $sourceRoot";
   isLibrary = true;
   isExecutable = true;
   libraryHaskellDepends = [
@@ -48,6 +48,8 @@ mkDerivation {
     th-lift-instances these time transformers transformers-base unix
     unordered-containers uri-encode uuid vector wai wai-websockets warp
     websockets wreq x509 yaml zlib
+    witherable semialign validation
+    cron
   ];
   executableHaskellDepends = [
     base bytestring pg-client text text-conversions

pkgs/development/misc/haskell/hasura/graphql-parser/default.nix

@@ -5,11 +5,11 @@
 }:
 mkDerivation {
   pname = "graphql-parser";
-  version = "0.1.0.0";
+  version = "0.1.0.1";
   src = fetchgit {
     url = "https://github.com/hasura/graphql-parser-hs.git";
-    sha256 = "0vz0sqqmr1l02d3f1pc5k7rm7vpxmg5d5ijvdcwdm34yw6x5lz1v";
-    rev = "623ad78aa46e7ba2ef1aa58134ad6136b0a85071";
+    sha256 = "sha256-oem/h0AQPk7eSM/P6wMoWV9KirxutE4hnQWwrpQ6TGk=";
+    rev = "ba8e26fef1488cf3c8c08e86f02730f56ec84e1f";
     fetchSubmodules = true;
   };
   libraryHaskellDepends = [
@@ -29,6 +29,7 @@ mkDerivation {
     template-haskell text text-builder th-lift-instances
     unordered-containers vector
   ];
+  doCheck = false;
   prePatch = "hpack";
   homepage = "https://github.com/hasura/graphql-parser-hs#readme";
   license = stdenv.lib.licenses.bsd3;

pkgs/development/python-modules/maildir-deduplicate/default.nix

@@ -1,27 +0,0 @@
-{ stdenv
-, buildPythonPackage
-, fetchPypi
-, isPy27
-, click
-}:
-
-buildPythonPackage rec {
-  pname = "maildir-deduplicate";
-  version = "2.1.0";
-  disabled = !isPy27;
-
-  src = fetchPypi {
-    inherit pname version;
-    sha256 = "263c7f2c85dafe06eaa15e8d7ab83817204f70a5f08cc25a607f3f01ed130b42";
-  };
-
-  propagatedBuildInputs = [ click ];
-
-  meta = with stdenv.lib; {
-    description = "Command-line tool to deduplicate mails from a set of maildir folders";
-    homepage = "https://github.com/kdeldycke/maildir-deduplicate";
-    license = licenses.gpl2;
-    broken = true;
-  };
-
-}

pkgs/development/python-modules/pip2nix/default.nix

@@ -1,40 +0,0 @@
-{ stdenv
-, buildPythonPackage
-, fetchPypi
-, click
-, configobj
-, contexter
-, jinja2
-, pytest
-, pip
-}:
-
-buildPythonPackage rec {
-  pname = "pip2nix";
-  version = "0.7.0";
-
-  src = fetchPypi {
-    inherit pname version;
-    sha256 = "ec9a71e09ac7f43cc7b6c9d386384eb7b5c331bf6ea0e72ca559d87979397a95";
-  };
-
-  propagatedBuildInputs = [ click configobj contexter pip jinja2 pytest ];
-
-  postPatch = ''
-    sed -i "s/'pip>=8,<10'/'pip'/" setup.py
-    sed -i "s/pip<10,>=8/pip/" ${pname}.egg-info/requires.txt
-  '';
-
-  # tests not included with pypi release
-  doCheck = false;
-
-  # Requires an old pip version
-  broken = true;
-
-  meta = with stdenv.lib; {
-    description = "Generate Nix expressions for Python packages";
-    homepage = "https://github.com/johbo/pip2nix";
-    license = licenses.gpl3;
-  };
-
-}

pkgs/development/python-modules/python-libarchive/default.nix

@@ -1,27 +0,0 @@
-{ stdenv
-, buildPythonPackage
-, fetchurl
-, isPy3k
-, pkgs
-}:
-
-buildPythonPackage rec {
-  version = "3.1.2-1";
-  pname = "libarchive";
-  disabled = isPy3k;
-
-  src = fetchurl {
-    url = "http://python-libarchive.googlecode.com/files/python-libarchive-${version}.tar.gz";
-    sha256 = "0j4ibc4mvq64ljya9max8832jafi04jciff9ia9qy0xhhlwkcx8x";
-  };
-
-  propagatedBuildInputs = [ pkgs.libarchive.lib ];
-
-  meta = with stdenv.lib; {
-    description = "Multi-format archive and compression library";
-    homepage = "https://libarchive.org/";
-    license = licenses.bsd0;
-    broken = true;
-  };
-
-}

pkgs/development/python-modules/qutip/default.nix

@@ -1,45 +0,0 @@
-{ stdenv
-, buildPythonPackage
-, fetchurl
-, numpy
-, scipy
-, matplotlib
-, pyqt4
-, cython
-, pkgs
-, nose
-}:
-
-buildPythonPackage rec {
-  pname = "qutip";
-  version = "2.2.0";
-
-  src = fetchurl {
-    url = "https://qutip.googlecode.com/files/QuTiP-${version}.tar.gz";
-    sha256 = "a26a639d74b2754b3a1e329d91300e587e8c399d8a81d8f18a4a74c6d6f02ba3";
-  };
-
-  propagatedBuildInputs = [ numpy scipy matplotlib pyqt4 cython ];
-
-  buildInputs = [ pkgs.gcc pkgs.qt4 pkgs.blas nose ];
-
-  meta = with stdenv.lib; {
-    description = "QuTiP - Quantum Toolbox in Python";
-    longDescription = ''
-      QuTiP is open-source software for simulating the dynamics of
-      open quantum systems. The QuTiP library depends on the
-      excellent Numpy and Scipy numerical packages. In addition,
-      graphical output is provided by Matplotlib. QuTiP aims to
-      provide user-friendly and efficient numerical simulations of a
-      wide variety of Hamiltonians, including those with arbitrary
-      time-dependence, commonly found in a wide range of physics
-      applications such as quantum optics, trapped ions,
-      superconducting circuits, and quantum nanomechanical
-      resonators.
-    '';
-    homepage = "http://qutip.org/";
-    license = licenses.bsd0;
-    broken = true;
-  };
-
-}

pkgs/development/python-modules/zope_i18n/default.nix

@@ -1,27 +0,0 @@
-{ stdenv
-, buildPythonPackage
-, fetchPypi
-, pytz
-, zope_component
-}:
-
-buildPythonPackage rec {
-  pname = "zope.i18n";
-  version = "4.7.0";
-
-  src = fetchPypi {
-    inherit pname version;
-    sha256 = "9fcc1adb4e5f6188769ab36f6f40a59b567bb5eef91f714584e0dfd0891be5d0";
-  };
-
-  propagatedBuildInputs = [ pytz zope_component ];
-
-  meta = with stdenv.lib; {
-    homepage = "https://github.com/zopefoundation/zope.i18n";
-    description = "Zope Internationalization Support";
-    license = licenses.zpl20;
-    maintainers = with maintainers; [ goibhniu ];
-    broken = true;
-  };
-
-}

pkgs/development/tools/ginkgo/default.nix

@@ -2,13 +2,13 @@
 
 buildGoModule rec {
   pname = "ginkgo";
-  version = "1.14.0";
+  version = "1.14.1";
 
   src = fetchFromGitHub {
     owner = "onsi";
     repo = "ginkgo";
     rev = "v${version}";
-    sha256 = "0nwvz0pqk2jqscq88fhppad4flrr8avkxfgbci4xklbar4g8i32v";
+    sha256 = "01nn33r1rg210zv0qmck0b16545gzr057w1kz8ca86l64qrwbcxx";
   };
   vendorSha256 = "072amyw1ir18v9vk268j2y7dhw3lfwvxzvzsdqhnp50rxsa911bx";
   doCheck = false;

pkgs/development/tools/haskell/haskell-language-server/default.nix

@@ -11,11 +11,11 @@
 }:
 mkDerivation {
   pname = "haskell-language-server";
-  version = "0.3.0.0";
+  version = "0.4.0.0";
   src = fetchgit {
     url = "https://github.com/haskell/haskell-language-server.git";
-    sha256 = "0gh3sgy6a08d8d3q6r2qn5r817ilzka2qkp0g0y6wsx7rjwag0yx";
-    rev = "23dda97f583e8ff39993b89c01bbd1ac24187605";
+    sha256 = "157bsq6i824bl6krw7znp0byd8ibaqsq7mfwnkl741dmrflsxpa9";
+    rev = "cb861b878ae01911b066182ff0d8080050c3b2d6";
     fetchSubmodules = true;
   };
   isLibrary = true;

pkgs/development/tools/haskell/haskell-language-server/hls-ghcide.nix

@@ -17,9 +17,9 @@ mkDerivation {
   pname = "ghcide";
   version = "0.2.0";
   src = fetchgit {
-    url = "https://github.com/wz1000/ghcide";
-    sha256 = "112bsk2660750n94gnsgrvd30rk0ccxb8dbhka606a11pcqv5cgx";
-    rev = "3f6cd4553279ec47d1599b502720791a4f4613cd";
+    url = "https://github.com/haskell/ghcide";
+    sha256 = "1zq7ngaak8il91a309rl51dghzasnk4m2sm3av6d93cyqyra1hfc";
+    rev = "078e3d3c0d319f83841ccbcdc60ff5f0e243f6be";
     fetchSubmodules = true;
   };
   isLibrary = true;

pkgs/development/tools/haskell/haskell-language-server/update.sh

@@ -29,7 +29,7 @@ ghcide_new_version=$(curl --silent "https://api.github.com/repos/haskell/haskell
 echo "Updating haskell-language-server's ghcide from old version $ghcide_old_version to new version $ghcide_new_version."
 echo "Running cabal2nix and outputting to ${ghcide_derivation_file}..."
 
-cabal2nix --revision "$ghcide_new_version" "https://github.com/wz1000/ghcide" > "$ghcide_derivation_file"
+cabal2nix --revision "$ghcide_new_version" "https://github.com/haskell/ghcide" > "$ghcide_derivation_file"
 
 
 # ===========================

pkgs/development/tools/misc/svls/default.nix

@@ -0,0 +1,25 @@
+{ lib
+, rustPlatform
+, fetchFromGitHub
+}:
+
+rustPlatform.buildRustPackage rec {
+  pname = "svls";
+  version = "0.1.17";
+
+  src = fetchFromGitHub {
+    owner = "dalance";
+    repo = "svls";
+    rev = "v${version}";
+    sha256 = "0qcd9pkshk94c6skzld8cyzppl05hk4vcmmaya8r9l6kdi1f4b5m";
+  };
+
+  cargoSha256 = "0dqa7iw0sffzh07qysznh7ma3d3vl5fhd0i2qmz7a3dvw8mvyvsm";
+
+  meta = with lib; {
+    description = "SystemVerilog language server";
+    homepage = "https://github.com/dalance/svls";
+    license = licenses.mit;
+    maintainers = with maintainers; [ trepetti ];
+  };
+}

pkgs/servers/hasura/cli.nix

@@ -9,7 +9,7 @@ buildGoModule rec {
 
   subPackages = [ "cmd/hasura" ];
 
-  vendorSha256 = "0a3mlkl00r680v8x3hy24ykggq5qm7k3101krlyfrb5y4karp75a";
+  vendorSha256 = "sha256-Fp6o3xZ/964q8yzJJFrqWZtQ5zYNy6Wreh42YxWjNbU=";
 
   doCheck = false;
 

pkgs/servers/hasura/default.nix

@@ -1,63 +0,0 @@
-{ haskell }:
-
-with haskell.lib;
-
-let
-  # version in cabal file is invalid
-  version = "1.2.1";
-
-  pkgs = haskell.packages.ghc865.override {
-    overrides = self: super: {
-      # cabal2nix  --subpath server --maintainer offline --no-check --revision 1.2.1 https://github.com/hasura/graphql-engine.git
-      hasura-graphql-engine = justStaticExecutables
-        ((self.callPackage ./graphql-engine.nix { }).overrideDerivation (d: {
-          name = "graphql-engine-${version}";
-
-          inherit version;
-
-          # hasura needs VERSION env exported during build
-          preBuild = "export VERSION=${version}";
-        }));
-
-      hasura-cli = self.callPackage ./cli.nix {
-        hasura-graphql-engine = self.hasura-graphql-engine // {
-          inherit version;
-        };
-      };
-
-      # internal dependencies, non published on hackage (find revisions in cabal.project file)
-      # cabal2nix --revision <rev> https://github.com/hasura/ci-info-hs.git
-      ci-info = self.callPackage ./ci-info.nix { };
-      # cabal2nix --revision <rev> https://github.com/hasura/graphql-parser-hs.git
-      graphql-parser = self.callPackage ./graphql-parser.nix { };
-      # cabal2nix --revision <rev> https://github.com/hasura/pg-client-hs.git
-      pg-client = self.callPackage ./pg-client.nix { };
-
-      # version constrained dependencies, without these hasura will not build,
-      # find versions in graphql-engine.cabal
-      # cabal2nix cabal://dependent-map-0.2.4.0
-      dependent-map = self.callPackage ./dependent-map.nix { };
-      # cabal2nix cabal://dependent-sum-0.4
-      dependent-sum = self.callPackage ./dependent-sum.nix { };
-      # cabal2nix cabal://these-0.7.6
-      these = doJailbreak (self.callPackage ./these.nix { });
-      # cabal2nix cabal://immortal-0.2.2.1
-      immortal = self.callPackage ./immortal.nix { };
-      # cabal2nix cabal://network-uri-2.6.1.0
-      network-uri = self.callPackage ./network-uri.nix { };
-      # cabal2nix cabal://ghc-heap-view-0.6.0
-      ghc-heap-view = disableLibraryProfiling (self.callPackage ./ghc-heap-view.nix { });
-
-      # unmark broewn packages and do required modifications
-      stm-hamt = doJailbreak (unmarkBroken super.stm-hamt);
-      superbuffer = dontCheck (doJailbreak (unmarkBroken super.superbuffer));
-      Spock-core = dontCheck (unmarkBroken super.Spock-core);
-      stm-containers = dontCheck (unmarkBroken super.stm-containers);
-      ekg-json = unmarkBroken super.ekg-json;
-      list-t = dontCheck (unmarkBroken super.list-t);
-      primitive-extras = unmarkBroken super.primitive-extras;
-    };
-  };
-in {
-  inherit (pkgs) hasura-graphql-engine hasura-cli;
-}

pkgs/servers/hasura/dependent-map.nix

@@ -1,13 +0,0 @@
-{ mkDerivation, base, containers, dependent-sum, stdenv }:
-mkDerivation {
-  pname = "dependent-map";
-  version = "0.2.4.0";
-  sha256 = "5db396bdb5d156434af920c074316c3b84b4d39ba8e1cd349c7bb6679cb28246";
-  revision = "1";
-  editedCabalFile = "0a5f35d1sgfq1cl1r5bgb5pwfjniiycxiif4ycxglaizp8g5rlr1";
-  libraryHaskellDepends = [ base containers dependent-sum ];
-  homepage = "https://github.com/mokus0/dependent-map";
-  description = "Dependent finite maps (partial dependent products)";
-  license = "unknown";
-  hydraPlatforms = stdenv.lib.platforms.none;
-}

pkgs/servers/hasura/dependent-sum.nix

@@ -1,10 +0,0 @@
-{ mkDerivation, base, stdenv }:
-mkDerivation {
-  pname = "dependent-sum";
-  version = "0.4";
-  sha256 = "a8deecb4153a1878173f8d0a18de0378ab068bc15e5035b9e4cb478e8e4e1a1e";
-  libraryHaskellDepends = [ base ];
-  homepage = "https://github.com/mokus0/dependent-sum";
-  description = "Dependent sum type";
-  license = stdenv.lib.licenses.publicDomain;
-}

pkgs/servers/hasura/ghc-heap-view.nix

@@ -1,18 +0,0 @@
-{ mkDerivation, base, binary, bytestring, Cabal, containers
-, deepseq, filepath, ghc-heap, stdenv, template-haskell
-, transformers
-}:
-mkDerivation {
-  pname = "ghc-heap-view";
-  version = "0.6.0";
-  sha256 = "99ed6034d02a7a942e1b6ed970e9f7028dcdfd5b5d29fd8a0fb89f1a5e7c5ec8";
-  enableSeparateDataOutput = true;
-  setupHaskellDepends = [ base Cabal filepath ];
-  libraryHaskellDepends = [
-    base binary bytestring containers ghc-heap template-haskell
-    transformers
-  ];
-  testHaskellDepends = [ base deepseq ];
-  description = "Extract the heap representation of Haskell values and thunks";
-  license = stdenv.lib.licenses.bsd3;
-}

pkgs/servers/hasura/immortal.nix

@@ -1,17 +0,0 @@
-{ mkDerivation, base, lifted-base, monad-control, stdenv, stm
-, tasty, tasty-hunit, transformers, transformers-base
-}:
-mkDerivation {
-  pname = "immortal";
-  version = "0.2.2.1";
-  sha256 = "ed4aa1a2883a693a73fec47c8c2d5332d61a0626a2013403e1a8fb25cc6c8d8e";
-  libraryHaskellDepends = [
-    base lifted-base monad-control stm transformers-base
-  ];
-  testHaskellDepends = [
-    base lifted-base stm tasty tasty-hunit transformers
-  ];
-  homepage = "https://github.com/feuerbach/immortal";
-  description = "Spawn threads that never die (unless told to do so)";
-  license = stdenv.lib.licenses.mit;
-}

pkgs/servers/hasura/network-uri.nix

@@ -1,18 +0,0 @@
-{ mkDerivation, base, deepseq, HUnit, parsec, stdenv
-, test-framework, test-framework-hunit, test-framework-quickcheck2
-}:
-mkDerivation {
-  pname = "network-uri";
-  version = "2.6.1.0";
-  sha256 = "423e0a2351236f3fcfd24e39cdbc38050ec2910f82245e69ca72a661f7fc47f0";
-  revision = "1";
-  editedCabalFile = "141nj7q0p9wkn5gr41ayc63cgaanr9m59yym47wpxqr3c334bk32";
-  libraryHaskellDepends = [ base deepseq parsec ];
-  testHaskellDepends = [
-    base HUnit test-framework test-framework-hunit
-    test-framework-quickcheck2
-  ];
-  homepage = "https://github.com/haskell/network-uri";
-  description = "URI manipulation";
-  license = stdenv.lib.licenses.bsd3;
-}

pkgs/servers/hasura/these.nix

@@ -1,25 +0,0 @@
-{ mkDerivation, aeson, base, base-compat, bifunctors, binary
-, containers, data-default-class, deepseq, hashable, keys, lens
-, mtl, QuickCheck, quickcheck-instances, semigroupoids, stdenv
-, tasty, tasty-quickcheck, transformers, transformers-compat
-, unordered-containers, vector, vector-instances
-}:
-mkDerivation {
-  pname = "these";
-  version = "0.7.6";
-  sha256 = "9464b83d98e626360a8ad9836ba77e5201cd1e9c89b95b1b11a28ef3c23ac746";
-  libraryHaskellDepends = [
-    aeson base base-compat bifunctors binary containers
-    data-default-class deepseq hashable keys lens mtl QuickCheck
-    semigroupoids transformers transformers-compat unordered-containers
-    vector vector-instances
-  ];
-  testHaskellDepends = [
-    aeson base base-compat bifunctors binary containers hashable lens
-    QuickCheck quickcheck-instances tasty tasty-quickcheck transformers
-    unordered-containers vector
-  ];
-  homepage = "https://github.com/isomorphism/these";
-  description = "An either-or-both data type & a generalized 'zip with padding' typeclass";
-  license = stdenv.lib.licenses.bsd3;
-}

pkgs/top-level/all-packages.nix

@@ -11507,6 +11507,8 @@ in
 
   svlint = callPackage ../development/tools/analysis/svlint { };
 
+  svls = callPackage ../development/tools/misc/svls { };
+
   swarm = callPackage ../development/tools/analysis/swarm { };
 
   swiftformat = callPackage ../development/tools/swiftformat { };
@@ -16315,17 +16317,9 @@ in
 
   hashi-ui = callPackage ../servers/hashi-ui {};
 
-  /* This package duplicates a lot of functionality from haskellPackages
-     instead of using the packages we maintain there. Now, a recent update to
-     haskellPackages causes these tools to fail evaluation, and I have been
-     unable to mark them as "broken" in a way that ofBorg bot recognizes. Since
-     I don't want to merge code into master that generates evaluation errors, I
-     have no other idea but to comment them out entirely.
+  hasura-graphql-engine = haskellPackages.graphql-engine;
 
-  inherit (callPackage ../servers/hasura { })
-    hasura-cli
-    hasura-graphql-engine;
-   */
+  hasura-cli = callPackage ../servers/hasura/cli.nix { };
 
   heapster = callPackage ../servers/monitoring/heapster { };
 
@@ -19720,7 +19714,7 @@ in
 
   catimg = callPackage ../tools/misc/catimg { };
 
-  catt = python3Packages.callPackage ../applications/video/catt { };
+  catt = callPackage ../applications/video/catt { };
 
   cava = callPackage ../applications/audio/cava { };
 
@@ -20914,8 +20908,8 @@ in
 
   hugo = callPackage ../applications/misc/hugo { };
 
-  hydrogen = callPackage ../applications/audio/hydrogen { };
-  hydrogen-unstable = qt5.callPackage ../applications/audio/hydrogen/unstable.nix { };
+  hydrogen = qt5.callPackage ../applications/audio/hydrogen { };
+  hydrogen_0 = callPackage ../applications/audio/hydrogen/0.nix { }; # Old stable, has GMKit.
 
   hydroxide = callPackage ../applications/networking/hydroxide { };
 

pkgs/top-level/python-packages.nix

@@ -3242,8 +3242,6 @@ in {
 
   libarchive-c = callPackage ../development/python-modules/libarchive-c { inherit (pkgs) libarchive; };
 
-  libarchive = self.python-libarchive; # The latter is the name upstream uses
-
   libarcus = callPackage ../development/python-modules/libarcus { inherit (pkgs) protobuf; };
 
   libasyncns = callPackage ../development/python-modules/libasyncns { inherit (pkgs) libasyncns pkgconfig; };
@@ -3492,8 +3490,6 @@ in {
 
   mailchimp = callPackage ../development/python-modules/mailchimp { };
 
-  maildir-deduplicate = callPackage ../development/python-modules/maildir-deduplicate { };
-
   mailman = callPackage ../servers/mail/mailman { };
 
   mailmanclient = callPackage ../development/python-modules/mailmanclient { };
@@ -4405,8 +4401,6 @@ in {
 
   pint = callPackage ../development/python-modules/pint { };
 
-  pip2nix = callPackage ../development/python-modules/pip2nix { };
-
   pip = callPackage ../development/python-modules/pip { };
 
   pipdate = callPackage ../development/python-modules/pipdate { };
@@ -5652,8 +5646,6 @@ in {
 
   python-Levenshtein = callPackage ../development/python-modules/python-levenshtein { };
 
-  python-libarchive = callPackage ../development/python-modules/python-libarchive { };
-
   python-logstash = callPackage ../development/python-modules/python-logstash { };
 
   python-ly = callPackage ../development/python-modules/python-ly { };
@@ -5932,8 +5924,6 @@ in {
 
   queuelib = callPackage ../development/python-modules/queuelib { };
 
-  qutip = callPackage ../development/python-modules/qutip { };
-
   r2pipe = callPackage ../development/python-modules/r2pipe { };
 
   rabbitpy = callPackage ../development/python-modules/rabbitpy { };
@@ -7667,8 +7657,6 @@ in {
 
   zope-hookable = callPackage ../development/python-modules/zope-hookable { };
 
-  zope_i18n = callPackage ../development/python-modules/zope_i18n { };
-
   zope_i18nmessageid = callPackage ../development/python-modules/zope_i18nmessageid { };
 
   zope_interface = callPackage ../development/python-modules/zope_interface { };