diff --git a/pkgs/development/haskell-modules/hackage-packages.nix b/pkgs/development/haskell-modules/hackage-packages.nix index cb888a6b4461..416c77fe56cd 100644 --- a/pkgs/development/haskell-modules/hackage-packages.nix +++ b/pkgs/development/haskell-modules/hackage-packages.nix @@ -1466,6 +1466,23 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "BiobaseEnsembl" = callPackage + ({ mkDerivation, aeson, attoparsec, base, binary, bytestring + , cereal, containers, deepseq, directory, either-unwrap, text + , vector, word8 + }: + mkDerivation { + pname = "BiobaseEnsembl"; + version = "0.1.0.0"; + sha256 = "1knbi8azq5n8kdgmbx4f2d14x6z94vj540ickq4dcspmbvslr0kf"; + libraryHaskellDepends = [ + aeson attoparsec base binary bytestring cereal containers deepseq + directory either-unwrap text vector word8 + ]; + description = "Ensembl related datastructures and functions"; + license = stdenv.lib.licenses.gpl3; + }) {}; + "BiobaseFR3D" = callPackage ({ mkDerivation, base, BiobaseXNA, bytestring, containers , filemanip, iteratee, tuple @@ -1483,24 +1500,46 @@ self: { }) {}; "BiobaseFasta" = callPackage - ({ mkDerivation, base, biocore, bytestring, cmdargs, conduit - , containers, transformers + ({ mkDerivation, base, BiobaseTypes, bytestring, deepseq, filepath + , lens, QuickCheck, resourcet, streaming, streaming-bytestring + , tasty, tasty-golden, tasty-hunit, tasty-quickcheck, tasty-silver + , tasty-th, text }: mkDerivation { pname = "BiobaseFasta"; - version = "0.0.1.0"; - sha256 = "035pr31mrmfhmpja8llw81jyxy11aba62bfph34gf3rsi96iylnw"; - isLibrary = true; - isExecutable = true; + version = "0.2.0.0"; + sha256 = "1ilsq8wjvmz1pw00rfk78f1si7s4ld3gbbp6w8nfq051hgg5ydsh"; libraryHaskellDepends = [ - base biocore bytestring conduit containers transformers + base BiobaseTypes bytestring deepseq lens resourcet streaming + streaming-bytestring ]; - executableHaskellDepends = [ cmdargs ]; - description = "conduit-based FASTA parser"; + testHaskellDepends = [ + base bytestring filepath QuickCheck resourcet streaming + streaming-bytestring tasty tasty-golden tasty-hunit + tasty-quickcheck tasty-silver tasty-th text + ]; + description = "streaming FASTA parser"; license = stdenv.lib.licenses.gpl3; hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "BiobaseHTTP" = callPackage + ({ mkDerivation, aeson, base, BiobaseEnsembl, bytestring, conduit + , either-unwrap, HTTP, http-conduit, hxt, mtl, network, Taxonomy + , text, transformers + }: + mkDerivation { + pname = "BiobaseHTTP"; + version = "1.1.0"; + sha256 = "0y26d4aqxqpdr142y26p70v6cnrr48dhxm5nnnhqxg0lsirbxad0"; + libraryHaskellDepends = [ + aeson base BiobaseEnsembl bytestring conduit either-unwrap HTTP + http-conduit hxt mtl network Taxonomy text transformers + ]; + description = "Libary to interface with the Bioinformatics HTTP services - Entrez Ensembl"; + license = stdenv.lib.licenses.gpl3; + }) {}; + "BiobaseInfernal" = callPackage ({ mkDerivation, aeson, attoparsec, base, binary, BiobaseTypes , BiobaseXNA, bytestring, cereal, cereal-text, cereal-vector @@ -5426,6 +5465,22 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "Fin_0_2_6_1" = callPackage + ({ mkDerivation, alg, base, foldable1, natural-induction, peano + , universe-base + }: + mkDerivation { + pname = "Fin"; + version = "0.2.6.1"; + sha256 = "15r5cvxwwbp7d6fmkfkzg65kzwf5v4j3rf84a5qsw900i4c05cmx"; + libraryHaskellDepends = [ + alg base foldable1 natural-induction peano universe-base + ]; + description = "Finite totally-ordered sets"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "Finance-Quote-Yahoo" = callPackage ({ mkDerivation, base, bytestring, http-conduit, network , old-locale, time @@ -11117,8 +11172,8 @@ self: { ({ mkDerivation, base }: mkDerivation { pname = "LParse"; - version = "0.2.2.2"; - sha256 = "0cgmbn6c7fgk6dngx7j1l56sizi37shs5mrdkiqy2k4imb7bc4hl"; + version = "0.2.3.0"; + sha256 = "060jxkdnw1s01sawnlzrm91ycjgpa3kw8n9xrb1hgcrbjkzdw39s"; libraryHaskellDepends = [ base ]; testHaskellDepends = [ base ]; description = "A continuation-based parser library"; @@ -23217,6 +23272,18 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "alg_0_2_9_0" = callPackage + ({ mkDerivation, base, util }: + mkDerivation { + pname = "alg"; + version = "0.2.9.0"; + sha256 = "0w5lxmz52nskh8ms3nliya78v1pb77f7nyn19klqf8yskaalywlq"; + libraryHaskellDepends = [ base util ]; + description = "Algebraic structures"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "alga" = callPackage ({ mkDerivation, aeson, base, containers, data-default, exceptions , file-embed, filepath, formatting, haskeline, hspec, hxt @@ -52425,19 +52492,19 @@ self: { }) {}; "confetti" = callPackage - ({ mkDerivation, base, directory, filepath, MissingH, tasty - , tasty-hunit, tasty-smallcheck, text, time, unix, yaml + ({ mkDerivation, base, cmdargs, directory, filepath, MissingH + , tasty, tasty-hunit, tasty-smallcheck, text, time, unix, yaml }: mkDerivation { pname = "confetti"; - version = "0.3.2"; - sha256 = "0ac1mrxwiyjwihywy7hclfymrixhb0mj8266sljzpmk1671qr4ym"; + version = "1.0.0"; + sha256 = "1ryvfaizai0m98lb687laqmix17k0f4a8cpbvpn15scng604gf0k"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base directory filepath MissingH text time unix yaml ]; - executableHaskellDepends = [ base directory text ]; + executableHaskellDepends = [ base cmdargs directory text ]; testHaskellDepends = [ base tasty tasty-hunit tasty-smallcheck text ]; @@ -57108,8 +57175,8 @@ self: { }: mkDerivation { pname = "cuckoo-filter"; - version = "0.2.0.1"; - sha256 = "01l1ilxdd83l60f5hmpajwszn77lfmk16aqygg1jz45zkrd3scnb"; + version = "0.2.0.2"; + sha256 = "1yya8r3igwms910xp3cc4y1y34f5yw3yqqy1wy49d4xsi6smyjdc"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -66983,15 +67050,15 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "dotenv_0_7_0_0" = callPackage + "dotenv_0_8_0_0" = callPackage ({ mkDerivation, base, base-compat, containers, directory , exceptions, hspec, hspec-megaparsec, megaparsec , optparse-applicative, process, text, transformers, yaml }: mkDerivation { pname = "dotenv"; - version = "0.7.0.0"; - sha256 = "1rxr90jcn1swfr4sac331w44cm4c7ci87ll2d2w03hbdlysvdv8h"; + version = "0.8.0.0"; + sha256 = "0b1pz7wh5kf0sjkig0y4ks6i2z5yzpvlnd6hgzl0sj4j6w2j35ly"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -83103,6 +83170,17 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "generic-monoid" = callPackage + ({ mkDerivation, base }: + mkDerivation { + pname = "generic-monoid"; + version = "0.1.0.0"; + sha256 = "0jzhmy6vi38p3cnlvi4hw59zga239y67nszzl7zscx263wsk7q0w"; + libraryHaskellDepends = [ base ]; + description = "Derive monoid instances for product types"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "generic-pretty" = callPackage ({ mkDerivation, ansi-wl-pprint, base, bytestring, containers , tasty, tasty-hunit, text, vector @@ -98098,6 +98176,27 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "hasbolt_0_1_3_2" = callPackage + ({ mkDerivation, base, binary, bytestring, connection, containers + , data-binary-ieee754, data-default, hex, hspec, network + , QuickCheck, text, transformers + }: + mkDerivation { + pname = "hasbolt"; + version = "0.1.3.2"; + sha256 = "14sq3iqbrfkwyswdka2285cdhwx3c6srfhn5qb7yw1nfjx2bdb1i"; + libraryHaskellDepends = [ + base binary bytestring connection containers data-binary-ieee754 + data-default network text transformers + ]; + testHaskellDepends = [ + base bytestring containers hex hspec QuickCheck text + ]; + description = "Haskell driver for Neo4j 3+ (BOLT protocol)"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "hasbolt-extras" = callPackage ({ mkDerivation, base, containers, free, hasbolt, lens, mtl , neat-interpolation, template-haskell, text, th-lift-instances @@ -99700,8 +99799,8 @@ self: { }: mkDerivation { pname = "haskell-names"; - version = "0.9.4"; - sha256 = "0dbf5rxysm57jn018wd3dfz3m621n0347mbpgv7q2yb77cwrlg8y"; + version = "0.9.5"; + sha256 = "0j1snakldb29v8786licz4k2b92pbdbxhxgyz22rvjypdxyhaa7h"; enableSeparateDataOutput = true; libraryHaskellDepends = [ aeson base bytestring containers data-lens-light filepath @@ -107399,8 +107498,8 @@ self: { }: mkDerivation { pname = "hinterface"; - version = "0.7.0"; - sha256 = "1n4w8mwx09i8f1h96p7nqls7r22xscy4z9fviwgivp0y59qfbdsx"; + version = "0.8.0"; + sha256 = "1mzq87sdcx50i67kf2lv5wg0k6ahxf1x2qxvi41dnaxkjjl1vcmr"; libraryHaskellDepends = [ array async base binary bytestring containers cryptonite deepseq exceptions lifted-async lifted-base memory monad-control @@ -107409,7 +107508,7 @@ self: { ]; testHaskellDepends = [ async base binary bytestring hspec monad-logger QuickCheck - transformers + transformers vector ]; description = "Haskell / Erlang interoperability library"; license = stdenv.lib.licenses.bsd3; @@ -113620,8 +113719,8 @@ self: { }: mkDerivation { pname = "hsdev"; - version = "0.3.2.2"; - sha256 = "0b4xjkj1qc6mbsp0sn7gqmhys3h39rbfam8qwvhjmgd7d1cbl69p"; + version = "0.3.2.3"; + sha256 = "03v1lls7dv134675x10rgp4nla5a9dgczf4g78vrx488zf50rf1v"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -119729,8 +119828,8 @@ self: { }: mkDerivation { pname = "hwormhole"; - version = "0.1.0.0"; - sha256 = "1nl9p0kd4nqrdhwms868mr6h904pl282i5ljhai7kvxr8s7v2s9v"; + version = "0.2.0.0"; + sha256 = "0y0wg4zxq8wzym8x7b103h0ai2z5ji22vvqz4i64pnzq83ksmxym"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -121889,6 +121988,20 @@ self: { license = stdenv.lib.licenses.publicDomain; }) {}; + "ihs_0_1_0_3" = callPackage + ({ mkDerivation, base, process }: + mkDerivation { + pname = "ihs"; + version = "0.1.0.3"; + sha256 = "1zfmxgb3l7mihzjyggzb30d9b57y2z80yk562z2x2padsqx95gqk"; + isLibrary = false; + isExecutable = true; + executableHaskellDepends = [ base process ]; + description = "Interpolated Haskell"; + license = stdenv.lib.licenses.publicDomain; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "ihttp" = callPackage ({ mkDerivation, attoparsec, base, bytestring, containers , contstuff, enumerator, netlines, network @@ -132536,22 +132649,24 @@ self: { "language-ocaml" = callPackage ({ mkDerivation, alex, array, base, containers, data-default - , extensible-effects, happy, interpolate, lens, megaparsec, mtl - , prettyprinter, string-qq, tasty, tasty-hunit, zlib + , directory, extensible-effects, extra, filepath, happy + , interpolate, lens, megaparsec, mtl, prettyprinter, string-qq + , tasty, tasty-golden, tasty-hunit, zlib }: mkDerivation { pname = "language-ocaml"; - version = "0.1.31"; - sha256 = "1vkqy5hdyqq5c22cccyvj1ci5srimpd5w8qwrwrrq9d5yai061w6"; + version = "0.2.0"; + sha256 = "1z9qk9vyv0nimkpgjkmnjvqg0schyiffyx59myi6r9gnmdagifh5"; libraryHaskellDepends = [ - array base containers data-default extensible-effects interpolate - lens megaparsec mtl prettyprinter string-qq tasty tasty-hunit + array base containers data-default directory extensible-effects + extra filepath interpolate lens megaparsec mtl prettyprinter + string-qq tasty tasty-golden tasty-hunit ]; libraryPkgconfigDepends = [ zlib ]; libraryToolDepends = [ alex happy ]; testHaskellDepends = [ - base interpolate megaparsec prettyprinter string-qq tasty - tasty-hunit + base directory extra filepath interpolate megaparsec prettyprinter + string-qq tasty tasty-golden tasty-hunit ]; description = "Language tools for manipulating OCaml programs in Haskell"; license = stdenv.lib.licenses.mit; @@ -172412,8 +172527,8 @@ self: { }: mkDerivation { pname = "proteome"; - version = "0.3.5.0"; - sha256 = "029wrri1b6wdkl16wmiybg11685i2jdwx4n12i9hn01zsb7absnx"; + version = "0.3.6.0"; + sha256 = "16kg7vqiykhxyahh8s5qr4xlsfwqpjjn8ndf920vynyhhrgpd262"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -178559,8 +178674,8 @@ self: { ({ mkDerivation, base, composition-prelude }: mkDerivation { pname = "recursion"; - version = "2.0.0.0"; - sha256 = "1mjq7jk2r97fkkq77c1ynrqk4qf39xh74wjpzqnva9bpm62pyqn5"; + version = "2.1.0.0"; + sha256 = "04vgcpijkphcy5ybiw4b14ax5nwjs8vrs0ywbpl2dfhsxw9gpv0h"; libraryHaskellDepends = [ base composition-prelude ]; description = "A recursion schemes library for GHC"; license = stdenv.lib.licenses.bsd3; @@ -210831,14 +210946,15 @@ self: { }: mkDerivation { pname = "test-lib"; - version = "0.1.0.0"; - sha256 = "1vwn32nsfz19gd620a8wbiwdhmq863lgxq4sibrl8x5hmypygxcc"; - revision = "1"; - editedCabalFile = "0dsyihhzlrdiy6v1jpgdr08algm1zrwpdqx6zzfjwddm4bl2bc59"; + version = "0.2"; + sha256 = "0i9q483sd5a8f7d95fxjqzyb4vsi3w1bycs518wi0k0w1rlfm33i"; + isLibrary = true; + isExecutable = true; libraryHaskellDepends = [ base containers directory filepath HUnit process simple-get-opt test-framework test-framework-hunit ]; + executableHaskellDepends = [ base simple-get-opt ]; description = "A library to make a quick test-runner script"; license = stdenv.lib.licenses.isc; }) {}; @@ -218260,8 +218376,8 @@ self: { }: mkDerivation { pname = "twitch"; - version = "0.1.7.1"; - sha256 = "1nhc6w0ax0fhr1rhdpf8k4j58kxp05fzkfkykbdgn9hjrmmxfn41"; + version = "0.1.7.2"; + sha256 = "1l42vifrq025s98gl8n0v2j42l9w6nys916a3pi0av17kqaa29v0"; libraryHaskellDepends = [ base data-default directory filepath fsnotify Glob optparse-applicative time transformers