Merge pull request #138255 from natsukium/mafft/init

mafft: init at 7.487

maintainers/maintainer-list.nix

@@ -8938,6 +8938,16 @@
     githubId = 818502;
     name = "Nathan Yong";
   };
+  natsukium = {
+    email = "nixpkgs@natsukium.com";
+    github = "natsukium";
+    githubId = 25083790;
+    name = "Tomoya Otabi";
+    keys = [{
+      longkeyid = "ed25519/0x9EA45A31DB994C53";
+      fingerprint = "3D14 6004 004C F882 D519  6CD4 9EA4 5A31 DB99 4C53";
+    }];
+  };
   natto1784 = {
     email = "natto@weirdnatto.in";
     github = "natto1784";

pkgs/applications/science/biology/mafft/default.nix

@@ -0,0 +1,27 @@
+{ lib, stdenv, fetchurl }:
+
+stdenv.mkDerivation rec {
+  pname = "mafft";
+  version = "7.490";
+
+  src = fetchurl {
+    url = "https://mafft.cbrc.jp/alignment/software/mafft-${version}-with-extensions-src.tgz";
+    sha256 = "0hb5jzcqdnjn3micm5z301lrnyvmn9pnnnxjz4h2wa4yicyz7vnn";
+  };
+
+  preBuild = ''
+    cd ./core
+    make clean
+  '';
+
+  makeFlags = [ "CC=${stdenv.cc.targetPrefix}cc" "PREFIX=$(out)" ];
+
+  meta = with lib;
+    {
+      description = "Multiple alignment program for amino acid or nucleotide sequences";
+      homepage = "https://mafft.cbrc.jp/alignment/software/";
+      license = licenses.bsd3;
+      maintainers = with maintainers; [ natsukium ];
+      platforms = platforms.unix;
+    };
+}

pkgs/top-level/all-packages.nix

@@ -33370,6 +33370,8 @@ with pkgs;
 
   MACS2 = callPackage ../applications/science/biology/MACS2 { };
 
+  mafft = callPackage ../applications/science/biology/mafft { };
+
   migrate = callPackage ../applications/science/biology/migrate { };
 
   minia = callPackage ../applications/science/biology/minia { };