From bdf68ddb6af5046dd4880ff077327e72131420f5 Mon Sep 17 00:00:00 2001
From: natsukium <tomoya.otabi@gmail.com>
Date: Fri, 17 Sep 2021 18:03:44 +0900
Subject: [PATCH 1/3] maintainers: Add natsukium

---
 maintainers/maintainer-list.nix | 10 ++++++++++
 1 file changed, 10 insertions(+)

diff --git a/maintainers/maintainer-list.nix b/maintainers/maintainer-list.nix
index 743aa3d4cc90..2a878fec0340 100644
--- a/maintainers/maintainer-list.nix
+++ b/maintainers/maintainer-list.nix
@@ -7689,6 +7689,16 @@
     githubId = 818502;
     name = "Nathan Yong";
   };
+  natsukium = {
+    email = "nixpkgs@natsukium.com";
+    github = "natsukium";
+    githubId = 25083790;
+    name = "Tomoya Otabi";
+    keys = [{
+      longkeyid = "ed25519/0x9EA45A31DB994C53";
+      fingerprint = "3D14 6004 004C F882 D519  6CD4 9EA4 5A31 DB99 4C53";
+    }];
+  };
   natto1784 = {
     email = "natto@weirdnatto.in";
     github = "natto1784";

From ff76ac91562bca8b113df5b3dac946b8fe6877fa Mon Sep 17 00:00:00 2001
From: natsukium <tomoya.otabi@gmail.com>
Date: Fri, 17 Sep 2021 18:08:25 +0900
Subject: [PATCH 2/3] mafft: init at 7.487

---
 .../science/biology/mafft/default.nix         | 27 +++++++++++++++++++
 pkgs/top-level/all-packages.nix               |  2 ++
 2 files changed, 29 insertions(+)
 create mode 100644 pkgs/applications/science/biology/mafft/default.nix

diff --git a/pkgs/applications/science/biology/mafft/default.nix b/pkgs/applications/science/biology/mafft/default.nix
new file mode 100644
index 000000000000..3247400bcab7
--- /dev/null
+++ b/pkgs/applications/science/biology/mafft/default.nix
@@ -0,0 +1,27 @@
+{ lib, stdenv, fetchurl }:
+
+stdenv.mkDerivation rec {
+  pname = "mafft";
+  version = "7.487";
+
+  src = fetchurl {
+    url = "https://mafft.cbrc.jp/alignment/software/mafft-${version}-with-extensions-src.tgz";
+    sha256 = "1wcfbpfivi6xx87xdswp0gfksandija8j8hbw1f9506ra5gga1ga";
+  };
+
+  preBuild = ''
+    cd ./core
+    make clean
+  '';
+
+  makeFlags = [ "CC=${stdenv.cc.targetPrefix}cc" "PREFIX=$(out)" ];
+
+  meta = with lib;
+    {
+      description = "Multiple alignment program for amino acid or nucleotide sequences";
+      homepage = "https://mafft.cbrc.jp/alignment/software/";
+      license = licenses.bsd3;
+      maintainers = with maintainers; [ natsukium ];
+      platforms = platforms.unix;
+    };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index e7fbd3653863..80bbd30809fd 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -30208,6 +30208,8 @@ with pkgs;
 
   MACS2 = callPackage ../applications/science/biology/MACS2 { };
 
+  mafft = callPackage ../applications/science/biology/mafft { };
+
   migrate = callPackage ../applications/science/biology/migrate { };
 
   minia = callPackage ../applications/science/biology/minia { };

From 0524e8856b9e72aa436b24e19e14e670a02a97f3 Mon Sep 17 00:00:00 2001
From: natsukium <tomoya.otabi@gmail.com>
Date: Tue, 22 Feb 2022 21:35:45 +0900
Subject: [PATCH 3/3] mafft: 7.487 -> 7.490

---
 pkgs/applications/science/biology/mafft/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/science/biology/mafft/default.nix b/pkgs/applications/science/biology/mafft/default.nix
index 3247400bcab7..764a0f0da83a 100644
--- a/pkgs/applications/science/biology/mafft/default.nix
+++ b/pkgs/applications/science/biology/mafft/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   pname = "mafft";
-  version = "7.487";
+  version = "7.490";
 
   src = fetchurl {
     url = "https://mafft.cbrc.jp/alignment/software/mafft-${version}-with-extensions-src.tgz";
-    sha256 = "1wcfbpfivi6xx87xdswp0gfksandija8j8hbw1f9506ra5gga1ga";
+    sha256 = "0hb5jzcqdnjn3micm5z301lrnyvmn9pnnnxjz4h2wa4yicyz7vnn";
   };
 
   preBuild = ''