From fedc7d09cd778402aba92465dd12c163c312bd4e Mon Sep 17 00:00:00 2001
From: Peter Romfeld <peter.romfeld.hk@gmail.com>
Date: Thu, 31 Jan 2019 11:55:32 +0800
Subject: [PATCH 01/38] pythonPackages.python-logstash: init at 0.4.6

---
 .../python-logstash/default.nix               | 21 +++++++++++++++++++
 pkgs/top-level/python-packages.nix            |  2 ++
 2 files changed, 23 insertions(+)
 create mode 100644 pkgs/development/python-modules/python-logstash/default.nix

diff --git a/pkgs/development/python-modules/python-logstash/default.nix b/pkgs/development/python-modules/python-logstash/default.nix
new file mode 100644
index 000000000000..f4ecccf06832
--- /dev/null
+++ b/pkgs/development/python-modules/python-logstash/default.nix
@@ -0,0 +1,21 @@
+{ lib, buildPythonPackage, fetchPypi }:
+
+buildPythonPackage rec {
+  pname = "python-logstash";
+  version = "0.4.6";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "13763yx0k655y0c8gxv7jj6cqp45zypx2fmnc56jnn9zz1fkx50h";
+  };
+
+  # no tests
+  doCheck = false;
+
+  meta = with lib; {
+    description = "Python logging handler for Logstash";
+    homepage = https://github.com/vklochan/python-logstash;
+    maintainers = with maintainers; [ peterromfeldhk ];
+    license = licenses.mit;
+  };
+}
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index 4db7eb9fbf71..3ff9f6ca9aff 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -4571,6 +4571,8 @@ in {
 
   python-libarchive = callPackage ../development/python-modules/python-libarchive { };
 
+  python-logstash = callPackage ../development/python-modules/python-logstash { };
+
   libarchive-c = callPackage ../development/python-modules/libarchive-c {
     inherit (pkgs) libarchive;
   };

From 4487809902c684a97fb19a7b41158968027e4ec0 Mon Sep 17 00:00:00 2001
From: Peter Hoeg <peter@hoeg.com>
Date: Fri, 18 Oct 2019 23:38:28 +0800
Subject: [PATCH 02/38] emacsPackages.vterm: fix dynamic library and
 autoloaders

We need both the .so as well as the proper autoloaders that are generated when
we build an emacs package, so we cannot use the normal stdenv.mkDerivation but
have to inject the building of the libraries instead.

Also, use the proper libvterm-neovim we have in nixpkgs instead of vendoring it.
---
 .../editors/emacs-modes/melpa-packages.nix    | 56 +++++--------------
 1 file changed, 13 insertions(+), 43 deletions(-)

diff --git a/pkgs/applications/editors/emacs-modes/melpa-packages.nix b/pkgs/applications/editors/emacs-modes/melpa-packages.nix
index 838e57343c43..39920b755f82 100644
--- a/pkgs/applications/editors/emacs-modes/melpa-packages.nix
+++ b/pkgs/applications/editors/emacs-modes/melpa-packages.nix
@@ -385,52 +385,22 @@ env NIXPKGS_ALLOW_BROKEN=1 nix-instantiate --show-trace ../../../../ -A emacsPac
             (attrs.nativeBuildInputs or []) ++ [ external.git ];
         });
 
-        vterm = let
-          emacsSources = pkgs.stdenv.mkDerivation {
-            name = self.emacs.name + "-sources";
-            src = self.emacs.src;
-
-            dontConfigure = true;
-            dontBuild = true;
-            doCheck = false;
-            fixupPhase = ":";
-
-            installPhase = ''
-              mkdir -p $out
-              cp -a * $out
-            '';
-
-          };
-
-          libvterm = pkgs.libvterm-neovim.overrideAttrs(old: rec {
-            pname = "libvterm-neovim";
-            version = "2019-04-27";
-            name = pname + "-" + version;
-            src = pkgs.fetchFromGitHub {
-              owner = "neovim";
-              repo = "libvterm";
-              rev = "89675ffdda615ffc3f29d1c47a933f4f44183364";
-              sha256 = "0l9ixbj516vl41v78fi302ws655xawl7s94gmx1kb3fmfgamqisy";
-            };
-          });
-
-        in pkgs.stdenv.mkDerivation {
-          inherit (super.vterm) name version src;
-
-          nativeBuildInputs = [ pkgs.cmake ];
-          buildInputs = [ self.emacs libvterm ];
-
+        vterm = super.vterm.overrideAttrs(old: {
+          buildInputs = old.buildInputs ++ [ self.emacs pkgs.cmake pkgs.libvterm-neovim ];
           cmakeFlags = [
-            "-DEMACS_SOURCE=${emacsSources}"
-            "-DUSE_SYSTEM_LIBVTERM=True"
+            "-DEMACS_SOURCE=${self.emacs.src}"
+            "-DUSE_SYSTEM_LIBVTERM=ON"
           ];
-
-          installPhase = ''
-            install -d $out/share/emacs/site-lisp
-            install ../*.el $out/share/emacs/site-lisp
-            install ../*.so $out/share/emacs/site-lisp
+          # we need the proper out directory to exist, so we do this in the
+          # postInstall instead of postBuild
+          postInstall = ''
+            pushd source/build >/dev/null
+            make
+            install -m444 -t $out/share/emacs/site-lisp/elpa/vterm-** ../*.so
+            popd > /dev/null
+            rm -rf $out/share/emacs/site-lisp/elpa/vterm-**/{CMake*,build,*.c,*.h}
           '';
-        };
+        });
         # Legacy alias
         emacs-libvterm = unstable.vterm;
 

From a3ea2866279eb82b79c721146583e40bea3605f2 Mon Sep 17 00:00:00 2001
From: Robert Scott <code@humanleg.org.uk>
Date: Thu, 17 Oct 2019 00:36:47 +0100
Subject: [PATCH 03/38] putty: 0.71 -> 0.73 (security)

fixing CVE-2019-17069

the AM subsitutions appear to be very old - they break 0.73's build and
modern releases seem to do without them fine
---
 pkgs/applications/networking/remote/putty/default.nix | 11 ++++-------
 1 file changed, 4 insertions(+), 7 deletions(-)

diff --git a/pkgs/applications/networking/remote/putty/default.nix b/pkgs/applications/networking/remote/putty/default.nix
index d8dc33c944e2..8c2d9ac36e9e 100644
--- a/pkgs/applications/networking/remote/putty/default.nix
+++ b/pkgs/applications/networking/remote/putty/default.nix
@@ -1,9 +1,9 @@
 { stdenv, lib, fetchurl, autoconf, automake, pkgconfig, libtool
-, gtk2, halibut, ncurses, perl
+, gtk2, halibut, ncurses, perl, darwin
 }:
 
 stdenv.mkDerivation rec {
-  version = "0.71";
+  version = "0.73";
   pname = "putty";
 
   src = fetchurl {
@@ -11,7 +11,7 @@ stdenv.mkDerivation rec {
       "https://the.earth.li/~sgtatham/putty/${version}/${pname}-${version}.tar.gz"
       "ftp://ftp.wayne.edu/putty/putty-website-mirror/${version}/${pname}-${version}.tar.gz"
     ];
-    sha256 = "1f66iss0kqk982azmxbk4xfm2i1csby91vdvly6cr04pz3i1r4rg";
+    sha256 = "076z34jpik2dmlwxicvf1djjgnahcqv12rjhmb9yq6ml7x0bbc1x";
   };
 
   # glib-2.62 deprecations
@@ -20,9 +20,6 @@ stdenv.mkDerivation rec {
   preConfigure = lib.optionalString stdenv.hostPlatform.isUnix ''
     perl mkfiles.pl
     ( cd doc ; make );
-    sed -e '/AM_PATH_GTK(/d' \
-        -e '/AC_OUTPUT/iAM_PROG_CC_C_O' \
-        -e '/AC_OUTPUT/iAM_PROG_AR' -i configure.ac
     ./mkauto.sh
     cd unix
   '' + lib.optionalString stdenv.hostPlatform.isWindows ''
@@ -41,7 +38,7 @@ stdenv.mkDerivation rec {
   nativeBuildInputs = [ autoconf automake halibut libtool perl pkgconfig ];
   buildInputs = lib.optionals stdenv.hostPlatform.isUnix [
     gtk2 ncurses
-  ];
+  ] ++ lib.optional stdenv.isDarwin darwin.apple_sdk.libs.utmp;
   enableParallelBuilding = true;
 
   meta = with lib; {

From 050db8db308f39c1ba84668f9907db72490847a1 Mon Sep 17 00:00:00 2001
From: pacien <pacien.trangirard@pacien.net>
Date: Thu, 24 Oct 2019 01:06:59 +0200
Subject: [PATCH 04/38] riot-web: 1.4.2 -> 1.5.0

---
 .../networking/instant-messengers/riot/riot-web.nix           | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/networking/instant-messengers/riot/riot-web.nix b/pkgs/applications/networking/instant-messengers/riot/riot-web.nix
index 05c5059a51f3..ccfad7259a5d 100644
--- a/pkgs/applications/networking/instant-messengers/riot/riot-web.nix
+++ b/pkgs/applications/networking/instant-messengers/riot/riot-web.nix
@@ -5,11 +5,11 @@
 
 stdenv.mkDerivation rec {
   pname = "riot-web";
-  version = "1.4.2";
+  version = "1.5.0";
 
   src = fetchurl {
     url = "https://github.com/vector-im/riot-web/releases/download/v${version}/riot-v${version}.tar.gz";
-    sha256 = "0bbal3y4clgp7j703f3ll5zwhbpjz6zpw3qslwza6lik4g4k0vaj";
+    sha256 = "08r9473ncfy3wzqhnds729s77fq82jjgz8w3yya07aahcxzasi94";
   };
 
   installPhase = let

From cacd74422a820adc04fe17424acb56e2c76fa625 Mon Sep 17 00:00:00 2001
From: pacien <pacien.trangirard@pacien.net>
Date: Thu, 24 Oct 2019 01:07:12 +0200
Subject: [PATCH 05/38] riot-desktop: 1.4.2 -> 1.5.0

---
 .../instant-messengers/riot/riot-desktop-package.json         | 2 +-
 .../networking/instant-messengers/riot/riot-desktop.nix       | 4 ++--
 2 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/applications/networking/instant-messengers/riot/riot-desktop-package.json b/pkgs/applications/networking/instant-messengers/riot/riot-desktop-package.json
index f7a70bce61a0..30012970d789 100644
--- a/pkgs/applications/networking/instant-messengers/riot/riot-desktop-package.json
+++ b/pkgs/applications/networking/instant-messengers/riot/riot-desktop-package.json
@@ -2,7 +2,7 @@
   "name": "riot-web",
   "productName": "Riot",
   "main": "src/electron-main.js",
-  "version": "1.4.2",
+  "version": "1.5.0",
   "description": "A feature-rich client for Matrix.org",
   "author": "New Vector Ltd.",
   "dependencies": {
diff --git a/pkgs/applications/networking/instant-messengers/riot/riot-desktop.nix b/pkgs/applications/networking/instant-messengers/riot/riot-desktop.nix
index f03849a9cd6f..de941d94fc87 100644
--- a/pkgs/applications/networking/instant-messengers/riot/riot-desktop.nix
+++ b/pkgs/applications/networking/instant-messengers/riot/riot-desktop.nix
@@ -6,12 +6,12 @@
 
 let
   executableName = "riot-desktop";
-  version = "1.4.2";
+  version = "1.5.0";
   riot-web-src = fetchFromGitHub {
     owner = "vector-im";
     repo = "riot-web";
     rev = "v${version}";
-    sha256 = "1s1m2jbcax92pql9yzw3kxdmn97a2xnas49rw3n1vldkla2wx4zx";
+    sha256 = "1xi5zg3602d7gdjxskpk2q3anpn2drrkxyirfvi9mzcfp2r05557";
   };
 
 in yarn2nix-moretea.mkYarnPackage rec {

From 5bb2426dbeef8c64ec56f5985c15e14b069bf2f6 Mon Sep 17 00:00:00 2001
From: Mario Rodas <marsam@users.noreply.github.com>
Date: Sat, 26 Oct 2019 09:00:00 -0500
Subject: [PATCH 06/38] sndio: fix build on darwin

---
 pkgs/misc/sndio/default.nix | 8 +++++++-
 1 file changed, 7 insertions(+), 1 deletion(-)

diff --git a/pkgs/misc/sndio/default.nix b/pkgs/misc/sndio/default.nix
index 1993b4bcce40..0f09483a8571 100644
--- a/pkgs/misc/sndio/default.nix
+++ b/pkgs/misc/sndio/default.nix
@@ -4,13 +4,19 @@ stdenv.mkDerivation rec {
   pname = "sndio";
   version = "1.6.0";
   enableParallelBuilding = true;
-  buildInputs = [ alsaLib ];
+  buildInputs = stdenv.lib.optionals stdenv.isLinux [ alsaLib ];
 
   src = fetchurl {
     url = "http://www.sndio.org/sndio-${version}.tar.gz";
     sha256 = "1havdx3q4mipgddmd2bnygr1yh6y64567m1yqwjapkhsq550dq4r";
   };
 
+  postFixup = stdenv.lib.optionalString stdenv.isDarwin ''
+    for file in $out/bin/*; do
+      install_name_tool -change libsndio.7.0.dylib $out/lib/libsndio.dylib $file
+    done
+  '';
+
   meta = with stdenv.lib; {
     homepage = "http://www.sndio.org";
     description = "Small audio and MIDI framework part of the OpenBSD project";

From 174bb765042277788e862698c28055399d5d6de8 Mon Sep 17 00:00:00 2001
From: Nikolay Korotkiy <sikmir@gmail.com>
Date: Fri, 25 Oct 2019 20:18:01 +0300
Subject: [PATCH 07/38] mu-repo: init at 1.8.0

---
 pkgs/applications/misc/mu-repo/default.nix | 26 ++++++++++++++++++++++
 pkgs/top-level/all-packages.nix            |  2 ++
 2 files changed, 28 insertions(+)
 create mode 100644 pkgs/applications/misc/mu-repo/default.nix

diff --git a/pkgs/applications/misc/mu-repo/default.nix b/pkgs/applications/misc/mu-repo/default.nix
new file mode 100644
index 000000000000..ddee1939b02a
--- /dev/null
+++ b/pkgs/applications/misc/mu-repo/default.nix
@@ -0,0 +1,26 @@
+{ lib, fetchFromGitHub, buildPythonApplication, pytest, git }:
+
+buildPythonApplication rec {
+  pname = "mu-repo";
+  version = "1.8.0";
+
+  src = fetchFromGitHub {
+    owner = "fabioz";
+    repo = pname;
+    rev = with lib;
+      "mu_repo_" + concatStringsSep "_" (splitVersion version);
+    sha256 = "1dxfggzbhiips0ww2s93yba9842ycp0i3x2i8vvcx0vgicv3rv6f";
+  };
+
+  checkInputs = [ pytest git ];
+  # disable test which assumes it's a git repo
+  checkPhase = "py.test mu_repo --ignore=mu_repo/tests/test_checkout.py";
+
+  meta = with lib; {
+    description = "Tool to help in dealing with multiple git repositories";
+    homepage = "http://fabioz.github.io/mu-repo/";
+    license = licenses.gpl3;
+    platforms = platforms.unix;
+    maintainers = with maintainers; [ sikmir ];
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index e66e829d5e92..adf2a0743f8a 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -19808,6 +19808,8 @@ in
 
   mtpaint = callPackage ../applications/graphics/mtpaint { };
 
+  mu-repo = python3Packages.callPackage ../applications/misc/mu-repo { };
+
   mucommander = callPackage ../applications/misc/mucommander { };
 
   multimarkdown = callPackage ../tools/typesetting/multimarkdown { };

From a8b27f789ae6afb1ff772f2f2bb2d80ff3754329 Mon Sep 17 00:00:00 2001
From: Lily Ballard <lily@sb.org>
Date: Sat, 26 Oct 2019 21:14:45 -0700
Subject: [PATCH 08/38] ffsend: 0.2.52 -> 0.2.54

---
 pkgs/tools/misc/ffsend/default.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/tools/misc/ffsend/default.nix b/pkgs/tools/misc/ffsend/default.nix
index 511b4fb1c36a..2d84314f6b54 100644
--- a/pkgs/tools/misc/ffsend/default.nix
+++ b/pkgs/tools/misc/ffsend/default.nix
@@ -16,16 +16,16 @@ with rustPlatform;
 
 buildRustPackage rec {
   pname = "ffsend";
-  version = "0.2.52";
+  version = "0.2.54";
 
   src = fetchFromGitLab {
     owner = "timvisee";
     repo = "ffsend";
     rev = "v${version}";
-    sha256 = "0bz0pgv7vdcha6sx2csx3mhkj4ph90w32p7h1wjvcgg3wlk1cgsf";
+    sha256 = "11g4gv6p37xpay8v0q6kv5fblsxixcm8l0wkdvzmbv7933318qz8";
   };
 
-  cargoSha256 = "01sgk4101ad0zk1k8zz89fsk2iq6j2vr8xd0wi6h88g2lgxvffzf";
+  cargoSha256 = "0wri2shj5xxgjv8gl0fq776s20897zwsgglh8ghgd2z3zjwjachw";
 
   nativeBuildInputs = [ cmake pkgconfig installShellFiles ];
   buildInputs = [ openssl ]

From ee32d5147c3d273f930dfae523bdfc696ddf1090 Mon Sep 17 00:00:00 2001
From: Pavol Rusnak <pavol@rusnak.io>
Date: Sun, 27 Oct 2019 13:03:55 +0100
Subject: [PATCH 09/38] tuxguitar: 1.2 -> 1.5.2

---
 .../editors/music/tuxguitar/default.nix         | 17 +++++++++--------
 1 file changed, 9 insertions(+), 8 deletions(-)

diff --git a/pkgs/applications/editors/music/tuxguitar/default.nix b/pkgs/applications/editors/music/tuxguitar/default.nix
index 70f99fa749b7..8522ecf9c78f 100644
--- a/pkgs/applications/editors/music/tuxguitar/default.nix
+++ b/pkgs/applications/editors/music/tuxguitar/default.nix
@@ -1,12 +1,12 @@
-{ stdenv, fetchurl, swt, jdk, makeWrapper, alsaLib }:
+{ stdenv, fetchurl, swt, jdk, makeWrapper, alsaLib, jack2, fluidsynth, libpulseaudio }:
 
 let metadata = assert stdenv.hostPlatform.system == "i686-linux" || stdenv.hostPlatform.system == "x86_64-linux";
   if stdenv.hostPlatform.system == "i686-linux" then
-    { arch = "x86"; sha256 = "1qmb51k0538pn7gv4nsvhfv33xik4l4af0qmpllkzrikmj8wvzlb"; }
+    { arch = "x86"; sha256 = "27675c358db237df74d20e8676000c25a87b9de0bb0a6d1c325e8d6db807d296"; }
   else
-    { arch = "x86_64"; sha256 = "12af47jhlrh9aq5b3d13l7cdhlndgnfpy61gz002hajbq7i00ixh"; };
+    { arch = "x86_64"; sha256 = "298555a249adb3ad72f3aef72a124e30bfa01cd069c7b5d152a738140e7903a2"; };
 in stdenv.mkDerivation rec {
-  version = "1.2";
+  version = "1.5.2";
   pname = "tuxguitar";
 
   src = fetchurl {
@@ -18,15 +18,16 @@ in stdenv.mkDerivation rec {
 
   installPhase = ''
     mkdir -p $out/bin
-    cp -r lib share $out/
-    cp tuxguitar $out/bin/tuxguitar
-    cp tuxguitar.jar $out/lib
+    cp -r dist lib share $out/
+    cp tuxguitar.sh $out/bin/tuxguitar
 
+    ln -s $out/dist $out/bin/dist
+    ln -s $out/lib $out/bin/lib
     ln -s $out/share $out/bin/share
 
     wrapProgram $out/bin/tuxguitar \
       --set JAVA "${jdk}/bin/java" \
-      --prefix LD_LIBRARY_PATH : "$out/lib/:${stdenv.lib.makeLibraryPath [ swt alsaLib ]}" \
+      --prefix LD_LIBRARY_PATH : "$out/lib/:${stdenv.lib.makeLibraryPath [ swt alsaLib jack2 fluidsynth libpulseaudio ]}" \
       --prefix CLASSPATH : "${swt}/jars/swt.jar:$out/lib/tuxguitar.jar:$out/lib/itext.jar"
   '';
 

From b0e5aac8ee2eaf1085449435007ff9c435ba5be1 Mon Sep 17 00:00:00 2001
From: Marek Mahut <marek.mahut@gmail.com>
Date: Sun, 27 Oct 2019 14:07:06 +0100
Subject: [PATCH 10/38] nvidia-texture-tools: 2.1.0 -> unstable-2019-10-27

Moving to unsable as the latest release is broken on darwin, closes #41109.
---
 pkgs/development/libraries/nvidia-texture-tools/default.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/development/libraries/nvidia-texture-tools/default.nix b/pkgs/development/libraries/nvidia-texture-tools/default.nix
index 73b5e3fe772e..44033e10012c 100644
--- a/pkgs/development/libraries/nvidia-texture-tools/default.nix
+++ b/pkgs/development/libraries/nvidia-texture-tools/default.nix
@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   pname = "nvidia-texture-tools";
-  version = "2.1.0";
+  version = "unstable-2019-10-27";
 
   src = fetchFromGitHub {
     owner = "castano";
     repo = "nvidia-texture-tools";
-    rev = version;
-    sha256 = "0p8ja0k323nkgm07z0qlslg6743vimy9rf3wad2968az0vwzjjyx";
+    rev = "a131e4c6b0b7c9c73ccc3c9e6f1c7e165be86bcc";
+    sha256 = "1qzyr3ib5dpxyq1y33lq02qv4cww075sm9bm4f651d34q5x38sk3";
   };
 
   nativeBuildInputs = [ cmake ];

From 75f1bb0097e8b913cad80f4b2e3695a15b4795e8 Mon Sep 17 00:00:00 2001
From: Marek Mahut <marek.mahut@gmail.com>
Date: Sun, 27 Oct 2019 14:08:10 +0100
Subject: [PATCH 11/38] nvidia-texture-tools: making as broken on aarch64

Upstream issue: https://github.com/castano/nvidia-texture-tools/issues/298
---
 pkgs/development/libraries/nvidia-texture-tools/default.nix | 1 +
 1 file changed, 1 insertion(+)

diff --git a/pkgs/development/libraries/nvidia-texture-tools/default.nix b/pkgs/development/libraries/nvidia-texture-tools/default.nix
index 44033e10012c..70c48631981f 100644
--- a/pkgs/development/libraries/nvidia-texture-tools/default.nix
+++ b/pkgs/development/libraries/nvidia-texture-tools/default.nix
@@ -37,5 +37,6 @@ stdenv.mkDerivation rec {
     homepage = https://github.com/castano/nvidia-texture-tools;
     license = licenses.mit;
     platforms = platforms.unix;
+    broken = stdenv.isAarch64;
   };
 }

From 81fed28811b06f2ab70d03f3e9a757f0ee40e086 Mon Sep 17 00:00:00 2001
From: Will Dietz <w@wdtz.org>
Date: Tue, 1 Oct 2019 00:15:53 -0500
Subject: [PATCH 12/38] qt5ct: qtsvg, qmakeFlags nixification

---
 pkgs/tools/misc/qt5ct/default.nix | 9 +++------
 1 file changed, 3 insertions(+), 6 deletions(-)

diff --git a/pkgs/tools/misc/qt5ct/default.nix b/pkgs/tools/misc/qt5ct/default.nix
index 952268b26f01..d7598b0c6dd5 100644
--- a/pkgs/tools/misc/qt5ct/default.nix
+++ b/pkgs/tools/misc/qt5ct/default.nix
@@ -1,4 +1,4 @@
-{ mkDerivation, lib, fetchurl, qtbase, qttools, qmake }:
+{ mkDerivation, lib, fetchurl, qtbase, qtsvg, qttools, qmake }:
 
 let inherit (lib) getDev; in
 
@@ -13,16 +13,13 @@ mkDerivation rec {
 
   nativeBuildInputs = [ qmake qttools ];
 
-  buildInputs = [ qtbase ];
+  buildInputs = [ qtbase qtsvg ];
 
   qmakeFlags = [
     "LRELEASE_EXECUTABLE=${getDev qttools}/bin/lrelease"
+    "PLUGINDIR=${placeholder "out"}/${qtbase.qtPluginPrefix}"
   ];
 
-  preConfigure = ''
-    qmakeFlags+=" PLUGINDIR=$out/$qtPluginPrefix"
-  '';
-
   enableParallelBuilding = true;
 
   meta = with lib; {

From 885576c97a9017d46bdaaab474b57e0bd0be84db Mon Sep 17 00:00:00 2001
From: Jan Tojnar <jtojnar@gmail.com>
Date: Sun, 27 Oct 2019 15:27:45 +0100
Subject: [PATCH 13/38] gnome3.sushi: fix module loading

---
 pkgs/desktops/gnome-3/core/sushi/default.nix | 9 +++++++++
 1 file changed, 9 insertions(+)

diff --git a/pkgs/desktops/gnome-3/core/sushi/default.nix b/pkgs/desktops/gnome-3/core/sushi/default.nix
index fc4034acf660..37bfd997b3f0 100644
--- a/pkgs/desktops/gnome-3/core/sushi/default.nix
+++ b/pkgs/desktops/gnome-3/core/sushi/default.nix
@@ -22,6 +22,15 @@ stdenv.mkDerivation rec {
     gst_all_1.gstreamer gst_all_1.gst-plugins-base gst_all_1.gst-plugins-good
   ];
 
+  # See https://github.com/NixOS/nixpkgs/issues/31168
+  postInstall = ''
+    for file in $out/libexec/org.gnome.NautilusPreviewer
+    do
+      sed -e $"2iimports.package._findEffectiveEntryPointName = () => \'$(basename $file)\' " \
+        -i $file
+    done
+  '';
+
   passthru = {
     updateScript = gnome3.updateScript {
       packageName = "sushi";

From e192b0e0af3df2d2f4cbdebf64ee506082d72447 Mon Sep 17 00:00:00 2001
From: Jan Tojnar <jtojnar@gmail.com>
Date: Sun, 27 Oct 2019 15:30:42 +0100
Subject: [PATCH 14/38] gnome3.sushi: format with nixpkgs-format

---
 pkgs/desktops/gnome-3/core/sushi/default.nix | 56 ++++++++++++++++----
 1 file changed, 47 insertions(+), 9 deletions(-)

diff --git a/pkgs/desktops/gnome-3/core/sushi/default.nix b/pkgs/desktops/gnome-3/core/sushi/default.nix
index 37bfd997b3f0..2d6d398fb459 100644
--- a/pkgs/desktops/gnome-3/core/sushi/default.nix
+++ b/pkgs/desktops/gnome-3/core/sushi/default.nix
@@ -1,7 +1,27 @@
-{ stdenv, fetchurl, pkgconfig, meson, gettext, gobject-introspection, glib
-, clutter-gtk, clutter-gst, gnome3, gtksourceview4, gjs
-, webkitgtk, libmusicbrainz5, icu, wrapGAppsHook, gst_all_1
-, gdk-pixbuf, librsvg, gtk3, harfbuzz, ninja, epoxy }:
+{ stdenv
+, fetchurl
+, pkgconfig
+, meson
+, gettext
+, gobject-introspection
+, glib
+, clutter-gtk
+, clutter-gst
+, gnome3
+, gtksourceview4
+, gjs
+, webkitgtk
+, libmusicbrainz5
+, icu
+, wrapGAppsHook
+, gst_all_1
+, gdk-pixbuf
+, librsvg
+, gtk3
+, harfbuzz
+, ninja
+, epoxy
+}:
 
 stdenv.mkDerivation rec {
   pname = "sushi";
@@ -13,13 +33,31 @@ stdenv.mkDerivation rec {
   };
 
   nativeBuildInputs = [
-    pkgconfig meson ninja gettext gobject-introspection wrapGAppsHook
+    pkgconfig
+    meson
+    ninja
+    gettext
+    gobject-introspection
+    wrapGAppsHook
   ];
   buildInputs = [
-    glib gtk3 gnome3.evince icu harfbuzz
-    clutter-gtk clutter-gst gjs gtksourceview4 gdk-pixbuf
-    librsvg libmusicbrainz5 webkitgtk epoxy
-    gst_all_1.gstreamer gst_all_1.gst-plugins-base gst_all_1.gst-plugins-good
+    glib
+    gtk3
+    gnome3.evince
+    icu
+    harfbuzz
+    clutter-gtk
+    clutter-gst
+    gjs
+    gtksourceview4
+    gdk-pixbuf
+    librsvg
+    libmusicbrainz5
+    webkitgtk
+    epoxy
+    gst_all_1.gstreamer
+    gst_all_1.gst-plugins-base
+    gst_all_1.gst-plugins-good
   ];
 
   # See https://github.com/NixOS/nixpkgs/issues/31168

From eada48dd9888931afb7c687ff04df183f8e81442 Mon Sep 17 00:00:00 2001
From: Tim Steinbach <tim@nequissimus.com>
Date: Sun, 27 Oct 2019 11:01:18 -0400
Subject: [PATCH 15/38] docker: 19.03.2 -> 19.03.4

---
 pkgs/applications/virtualization/docker/default.nix | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/pkgs/applications/virtualization/docker/default.nix b/pkgs/applications/virtualization/docker/default.nix
index 9902ae2140c4..1bf2ea4a6f16 100644
--- a/pkgs/applications/virtualization/docker/default.nix
+++ b/pkgs/applications/virtualization/docker/default.nix
@@ -213,13 +213,13 @@ rec {
   };
 
   docker_19_03 = makeOverridable dockerGen {
-    version = "19.03.2";
-    rev = "6a30dfca03664a0b6bf0646a7d389ee7d0318e6e";
-    sha256 = "0bghqwxlx4v06bwcv3c2wizbihhf983gvypx5sjcbgmiyd3bgb47";
+    version = "19.03.4";
+    rev = "9013bf583a215dc1488d941f9b6f7f11e1ea899f";
+    sha256 = "094d6d93jd7g1vw362cqbv9qbyv8h6pb6dj750pgqvnf1bn1mffb";
     runcRev = "3e425f80a8c931f88e6d94a8c831b9d5aa481657";
     runcSha256 = "18psc830b2rkwml1x6vxngam5b5wi3pj14mw817rshpzy87prspj";
-    containerdRev = "894b81a4b802e4eb2a91d1ce216b8817763c29fb";
-    containerdSha256 = "0sp5mn5wd3xma4svm6hf67hyhiixzkzz6ijhyjkwdrc4alk81357";
+    containerdRev = "b34a5c8af56e510852c35414db4c1f4fa6172339";
+    containerdSha256 = "1kddhkd93wkrimk0yjcqiavdrqc818nd39rf3wrgxyilx1mfnrwb";
     tiniRev = "fec3683b971d9c3ef73f284f176672c44b448662";
     tiniSha256 = "1h20i3wwlbd8x4jr2gz68hgklh0lb0jj7y5xk1wvr8y58fip1rdn";
   };

From b24a32d0c73359bfd73be8a54a2b6cec7351a4a8 Mon Sep 17 00:00:00 2001
From: xbreak <xbreak@alphaware.se>
Date: Sun, 27 Oct 2019 10:11:17 +0000
Subject: [PATCH 16/38] pythonPackages.python-nomad: init at 1.1.0

Python client library for Hashicorp Nomad
---
 .../python-modules/python-nomad/default.nix   | 23 +++++++++++++++++++
 pkgs/top-level/python-packages.nix            |  2 ++
 2 files changed, 25 insertions(+)
 create mode 100644 pkgs/development/python-modules/python-nomad/default.nix

diff --git a/pkgs/development/python-modules/python-nomad/default.nix b/pkgs/development/python-modules/python-nomad/default.nix
new file mode 100644
index 000000000000..c4ec84512a62
--- /dev/null
+++ b/pkgs/development/python-modules/python-nomad/default.nix
@@ -0,0 +1,23 @@
+{ stdenv, buildPythonPackage, fetchPypi, requests }:
+
+buildPythonPackage rec {
+  pname = "python-nomad";
+  version = "1.1.0";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "1rf6ad35vg3yi1p4l383xwx0ammdvr1k71bxg93bgcvljypx4cyn";
+  };
+
+  propagatedBuildInputs = [ requests ];
+
+  # Tests require nomad agent
+  doCheck = false;
+
+  meta = with stdenv.lib; {
+    description = "Python client library for Hashicorp Nomad";
+    homepage = "https://github.com/jrxFive/python-nomad";
+    license = licenses.mit;
+    maintainers = with maintainers; [ xbreak ];
+  };
+}
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index 563f77bc2e2b..82293c8a5714 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -5839,6 +5839,8 @@ in {
 
   pyregion = callPackage ../development/python-modules/pyregion {};
 
+  python-nomad = callPackage ../development/python-modules/python-nomad { };
+
   python-u2flib-host = callPackage ../development/python-modules/python-u2flib-host { };
 
   python-xmp-toolkit = callPackage ../development/python-modules/python-xmp-toolkit { };

From e5f671a7dcb9f33d5b3cc7cb677089c9c0cfadb6 Mon Sep 17 00:00:00 2001
From: Robert Scott <code@humanleg.org.uk>
Date: Fri, 11 Oct 2019 22:11:15 +0100
Subject: [PATCH 17/38] pythonPackages.rpyc: fix tests to actually execute

---
 .../python-modules/rpyc/default.nix           | 19 ++++++++++++++-----
 1 file changed, 14 insertions(+), 5 deletions(-)

diff --git a/pkgs/development/python-modules/rpyc/default.nix b/pkgs/development/python-modules/rpyc/default.nix
index 374900f077c3..42d7b442ad6b 100644
--- a/pkgs/development/python-modules/rpyc/default.nix
+++ b/pkgs/development/python-modules/rpyc/default.nix
@@ -1,6 +1,6 @@
 { stdenv
 , buildPythonPackage
-, fetchPypi
+, fetchFromGitHub
 , nose
 , plumbum
 }:
@@ -9,12 +9,21 @@ buildPythonPackage rec {
   pname = "rpyc";
   version = "4.1.2";
 
-  src = fetchPypi {
-    inherit pname version;
-    sha256 = "0df276076891797bbaaff322cc6debb02e10817426bba00a9beca915053a8a91";
+  src = fetchFromGitHub {
+    owner = "tomerfiliba";
+    repo = pname;
+    rev = version;
+    sha256 = "1xvrcik1650r1412fg79va0kd0fgg1ml241y1ai429qwy87dil1k";
   };
 
-  propagatedBuildInputs = [ nose plumbum ];
+  propagatedBuildInputs = [ plumbum ];
+
+  checkInputs = [ nose ];
+  checkPhase = ''
+    cd tests
+    # some tests have added complexities and some tests attempt network use
+    nosetests -I test_deploy -I test_gevent_server -I test_ssh -I test_registry
+  '';
 
   meta = with stdenv.lib; {
     description = "Remote Python Call (RPyC), a transparent and symmetric RPC library";

From 4aaf2ad527e123e99ecb993130e8458125a6a42f Mon Sep 17 00:00:00 2001
From: Tim Steinbach <tim@nequissimus.com>
Date: Sun, 27 Oct 2019 14:59:39 -0400
Subject: [PATCH 18/38] oh-my-zsh: 2019-10-25 -> 2019-10-27

---
 pkgs/shells/zsh/oh-my-zsh/default.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/shells/zsh/oh-my-zsh/default.nix b/pkgs/shells/zsh/oh-my-zsh/default.nix
index 8c88522f7153..af22a1e1be24 100644
--- a/pkgs/shells/zsh/oh-my-zsh/default.nix
+++ b/pkgs/shells/zsh/oh-my-zsh/default.nix
@@ -4,13 +4,13 @@
 { stdenv, fetchgit }:
 
 stdenv.mkDerivation rec {
-  version = "2019-10-25";
+  version = "2019-10-27";
   pname = "oh-my-zsh";
-  rev = "9785d24172a8cc558e90dd266e37ef5ffa29aa80";
+  rev = "e363109a6d3367d8be1dd66f05a38eb38b4257d7";
 
   src = fetchgit { inherit rev;
     url = "https://github.com/robbyrussell/oh-my-zsh";
-    sha256 = "0rjrswk4j3ga49s15z7fss64k0n3bz6z0j0sx7hai6ry58bh3m2v";
+    sha256 = "05ald17kr9bqx106a4cc5i48w8sf67vlghd96k2lciiwjy9dcdki";
   };
 
   pathsToLink = [ "/share/oh-my-zsh" ];

From 84ab228a85537be8869d842ef9b33ea027b71871 Mon Sep 17 00:00:00 2001
From: Robert Scott <code@humanleg.org.uk>
Date: Sun, 27 Oct 2019 19:25:35 +0000
Subject: [PATCH 19/38] xapian: 1.4.12 -> 1.4.13

update darwin patch
---
 pkgs/development/libraries/xapian/default.nix               | 2 +-
 .../libraries/xapian/skip-flaky-darwin-test.patch           | 6 +++---
 2 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/pkgs/development/libraries/xapian/default.nix b/pkgs/development/libraries/xapian/default.nix
index bb14f3437ba5..dfec2197385c 100644
--- a/pkgs/development/libraries/xapian/default.nix
+++ b/pkgs/development/libraries/xapian/default.nix
@@ -37,5 +37,5 @@ let
     };
   };
 in {
-  xapian_1_4 = generic "1.4.12" "0z5c1y9vp519h2x2igjq39v6j615nppry0wasd0xn4hphgd3d2jg";
+  xapian_1_4 = generic "1.4.13" "0z0k8902bz2ckdggikj5yz11ik2n8krmdwzvpqv60phcm3zzzy4k";
 }
diff --git a/pkgs/development/libraries/xapian/skip-flaky-darwin-test.patch b/pkgs/development/libraries/xapian/skip-flaky-darwin-test.patch
index 72a7c3e721f4..cce96a2762bf 100644
--- a/pkgs/development/libraries/xapian/skip-flaky-darwin-test.patch
+++ b/pkgs/development/libraries/xapian/skip-flaky-darwin-test.patch
@@ -1,14 +1,14 @@
 diff -Naur xapian-core.old/tests/api_db.cc xapian-core.new/tests/api_db.cc
 --- xapian-core.old/tests/api_db.cc
 +++ xapian-core.new/tests/api_db.cc
-@@ -998,6 +998,7 @@
+@@ -1020,6 +1020,7 @@
  
  // test for keepalives
  DEFINE_TESTCASE(keepalive1, remote) {
 +    SKIP_TEST("Fails in darwin nix build environment");
-     Xapian::Database db(get_remote_database("apitest_simpledata", 5000));
+     XFAIL_FOR_BACKEND("multi_glass_remoteprog_glass",
+ 		      "Multi remote databases are currently buggy");
  
-     /* Test that keep-alives work */
 diff -Naur xapian-core.old/tests/api_scalability.cc xapian-core.new/tests/api_scalability.cc
 --- xapian-core.old/tests/api_scalability.cc
 +++ xapian-core.new/tests/api_scalability.cc

From fa1e275f31f2937af227448372a83e05a8f8980f Mon Sep 17 00:00:00 2001
From: Benjamin Hipple <bhipple@protonmail.com>
Date: Sun, 27 Oct 2019 15:34:16 -0400
Subject: [PATCH 20/38] mkl: 2019.3 -> 2019.5 (#71476)

Includes bugfixes, new features, and performance improvements.

Full release notes here:
https://software.intel.com/en-us/articles/intel-math-kernel-library-release-notes-and-new-features

Leave Darwin on 2019.3 pending resolution of DMG issues
---
 .../libraries/science/math/mkl/default.nix    | 60 +++++++++++--------
 1 file changed, 36 insertions(+), 24 deletions(-)

diff --git a/pkgs/development/libraries/science/math/mkl/default.nix b/pkgs/development/libraries/science/math/mkl/default.nix
index 5700b2118b97..c1a5ea2969e1 100644
--- a/pkgs/development/libraries/science/math/mkl/default.nix
+++ b/pkgs/development/libraries/science/math/mkl/default.nix
@@ -3,11 +3,25 @@
   For details on using mkl as a blas provider for python packages such as numpy,
   numexpr, scipy, etc., see the Python section of the NixPkgs manual.
 */
-stdenvNoCC.mkDerivation rec {
-  name = "mkl-${version}";
-  version = "${date}.${rel}";
-  date = "2019.3";
-  rel = "199";
+let
+  # Release notes and download URLs are here:
+  # https://registrationcenter.intel.com/en/products/
+  version = "${year}.${spot}.${rel}";
+  year = "2019";
+
+  # Darwin is pinned to 2019.3 because the DMG does not unpack; see here for details:
+  # https://github.com/matthewbauer/undmg/issues/4
+  spot = if stdenvNoCC.isDarwin then "3" else "5";
+  rel = if stdenvNoCC.isDarwin then "199" else "281";
+
+  rpm-ver = "${year}.${spot}-${rel}-${year}.${spot}-${rel}";
+
+  # Intel openmp uses its own versioning, but shares the spot release patch.
+  openmp-ver = "19.0.${spot}-${rel}-19.0.${spot}-${rel}";
+
+in stdenvNoCC.mkDerivation {
+  pname = "mkl";
+  inherit version;
 
   src = if stdenvNoCC.isDarwin
     then
@@ -17,27 +31,25 @@ stdenvNoCC.mkDerivation rec {
       })
     else
       (fetchurl {
-        url = "http://registrationcenter-download.intel.com/akdlm/irc_nas/tec/15275/l_mkl_${version}.tgz";
-        sha256 = "13rb2v2872jmvzcqm4fqsvhry0j2r5cn4lqql4wpqbl1yia2pph6";
+        url = "https://registrationcenter-download.intel.com/akdlm/irc_nas/tec/15816/l_mkl_${version}.tgz";
+        sha256 = "0zkk4rrq7g44acxaxhpd2053r66w169mww6917an0lxhd52fm5cr";
       });
 
   nativeBuildInputs = if stdenvNoCC.isDarwin
     then
-      [ undmg
-        darwin.cctools
-      ]
+      [ undmg darwin.cctools ]
     else
       [ rpmextract ];
 
   buildPhase = if stdenvNoCC.isDarwin then ''
-      for f in Contents/Resources/pkg/*.tgz; do
-          tar xzvf $f
-      done
+    for f in Contents/Resources/pkg/*.tgz; do
+      tar xzvf $f
+    done
   '' else ''
-    rpmextract rpm/intel-mkl-common-c-${date}-${rel}-${date}-${rel}.noarch.rpm
-    rpmextract rpm/intel-mkl-core-${date}-${rel}-${date}-${rel}.x86_64.rpm
-    rpmextract rpm/intel-mkl-core-rt-${date}-${rel}-${date}-${rel}.x86_64.rpm
-    rpmextract rpm/intel-openmp-19.0.3-${rel}-19.0.3-${rel}.x86_64.rpm
+    rpmextract rpm/intel-mkl-common-c-${rpm-ver}.noarch.rpm
+    rpmextract rpm/intel-mkl-core-${rpm-ver}.x86_64.rpm
+    rpmextract rpm/intel-mkl-core-rt-${rpm-ver}.x86_64.rpm
+    rpmextract rpm/intel-openmp-${openmp-ver}.x86_64.rpm
   '';
 
   installPhase = ''
@@ -82,12 +94,12 @@ stdenvNoCC.mkDerivation rec {
   # larger updated load commands do not fit. Use install_name_tool
   # explicitly and ignore the error.
   postFixup = stdenvNoCC.lib.optionalString stdenvNoCC.isDarwin ''
-      for f in $out/lib/*.dylib; do
-          install_name_tool -id $out/lib/$(basename $f) $f || true
-      done
-      install_name_tool -change @rpath/libiomp5.dylib $out/lib/libiomp5.dylib $out/lib/libmkl_intel_thread.dylib
-      install_name_tool -change @rpath/libtbb.dylib $out/lib/libtbb.dylib $out/lib/libmkl_tbb_thread.dylib
-      install_name_tool -change @rpath/libtbbmalloc.dylib $out/lib/libtbbmalloc.dylib $out/lib/libtbbmalloc_proxy.dylib
+    for f in $out/lib/*.dylib; do
+      install_name_tool -id $out/lib/$(basename $f) $f || true
+    done
+    install_name_tool -change @rpath/libiomp5.dylib $out/lib/libiomp5.dylib $out/lib/libmkl_intel_thread.dylib
+    install_name_tool -change @rpath/libtbb.dylib $out/lib/libtbb.dylib $out/lib/libmkl_tbb_thread.dylib
+    install_name_tool -change @rpath/libtbbmalloc.dylib $out/lib/libtbbmalloc.dylib $out/lib/libtbbmalloc_proxy.dylib
   '';
 
   # Per license agreement, do not modify the binary
@@ -105,6 +117,6 @@ stdenvNoCC.mkDerivation rec {
     homepage = https://software.intel.com/en-us/mkl;
     license = licenses.issl;
     platforms = [ "x86_64-linux" "x86_64-darwin" ];
-    maintainers = [ maintainers.bhipple ];
+    maintainers = with maintainers; [ bhipple ];
   };
 }

From 509a1e0b7874b30b886ad7b7b2acf3142731746c Mon Sep 17 00:00:00 2001
From: Jan Tojnar <jtojnar@gmail.com>
Date: Sun, 27 Oct 2019 16:25:23 +0100
Subject: [PATCH 21/38] =?UTF-8?q?colord-gtk:=200.1.26=20=E2=86=92=200.2.0?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

https://github.com/hughsie/colord-gtk/commit/f74545cfce2a996840b9a6964f227dfd3cf0173d
---
 pkgs/tools/misc/colord-gtk/default.nix | 59 +++++++++++++++++++++-----
 1 file changed, 49 insertions(+), 10 deletions(-)

diff --git a/pkgs/tools/misc/colord-gtk/default.nix b/pkgs/tools/misc/colord-gtk/default.nix
index 38b4916e3942..b2113f8304cf 100644
--- a/pkgs/tools/misc/colord-gtk/default.nix
+++ b/pkgs/tools/misc/colord-gtk/default.nix
@@ -1,19 +1,58 @@
-{ stdenv, fetchurl, colord, intltool, glib, gtk3, pkgconfig, lcms2 }:
+{ stdenv
+, fetchurl
+, colord
+, gettext
+, meson
+, ninja
+, gobject-introspection
+, gtk-doc
+, docbook-xsl-ns
+, docbook_xsl
+, docbook_xml_dtd_412
+, libxslt
+, glib
+, gtk3
+, pkgconfig
+, lcms2
+}:
 
 stdenv.mkDerivation rec {
-  name = "colord-gtk-0.1.26";
+  pname = "colord-gtk";
+  version = "0.2.0";
+
+  outputs = [ "out" "dev" "devdoc" ];
 
   src = fetchurl {
-    url = "https://www.freedesktop.org/software/colord/releases/${name}.tar.xz";
-    sha256 = "0i9y3bb5apj6a0f8cx36l6mjzs7xc0k7nf0magmf58vy2mzhpl18";
+    url = "https://www.freedesktop.org/software/colord/releases/${pname}-${version}.tar.xz";
+    sha256 = "05y78jbcbar22sgyhzffhv98dbpl4v6k8j9p807h17y6ighglk1a";
   };
 
-  nativeBuildInputs = [ pkgconfig ];
-  buildInputs = [ intltool colord glib gtk3 lcms2 ];
+  nativeBuildInputs = [
+    pkgconfig
+    gettext
+    meson
+    ninja
+    gobject-introspection
+    gtk-doc
+    docbook-xsl-ns
+    docbook_xsl
+    docbook_xml_dtd_412
+    libxslt
+  ];
 
-  meta = {
-    homepage = http://www.freedesktop.org/software/colord/intro.html;
-    license = stdenv.lib.licenses.lgpl2Plus;
-    platforms = stdenv.lib.platforms.linux;
+  buildInputs = [
+    glib
+    lcms2
+  ];
+
+  propagatedBuildInputs = [
+    colord
+    gtk3
+  ];
+
+  meta = with stdenv.lib; {
+    homepage = "https://www.freedesktop.org/software/colord/intro.html";
+    license = licenses.lgpl21Plus;
+    platforms = platforms.linux;
   };
 }

From 3637b5829f83dc161d5ea2c56a2e901a147ce4df Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Mon, 21 Oct 2019 04:13:09 -0700
Subject: [PATCH 22/38] clickhouse: 19.13.5.44 -> 19.13.6.51

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/clickhouse/versions
---
 pkgs/servers/clickhouse/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/servers/clickhouse/default.nix b/pkgs/servers/clickhouse/default.nix
index f07ab98bbc45..4c586efe1778 100644
--- a/pkgs/servers/clickhouse/default.nix
+++ b/pkgs/servers/clickhouse/default.nix
@@ -7,13 +7,13 @@
 
 stdenv.mkDerivation rec {
   pname = "clickhouse";
-  version = "19.13.5.44";
+  version = "19.13.6.51";
 
   src = fetchFromGitHub {
     owner  = "yandex";
     repo   = "ClickHouse";
     rev    = "v${version}-stable";
-    sha256 = "1h0jjpa1wrms5vcgx1vf8fmkc7jjrql1r70dvwr0nw8f7rfyi1l6";
+    sha256 = "0mcwfam1nrs2g54syw7vvpfkjn3l4gfzvla7xbg92lr03fn6kbn2";
   };
 
   nativeBuildInputs = [ cmake libtool ninja ];

From da51ce27133034958bf5dfb6f834149cd3e8927c Mon Sep 17 00:00:00 2001
From: Michael Weiss <dev.primeos@gmail.com>
Date: Sun, 27 Oct 2019 17:36:28 +0100
Subject: [PATCH 23/38] python37Packages.tatsu: init at 4.4.0

Co-authored-by: Jonathan Ringer <jonringer117@gmail.com>
---
 .../python-modules/tatsu/default.nix          | 40 +++++++++++++++++++
 pkgs/top-level/python-packages.nix            |  2 +
 2 files changed, 42 insertions(+)
 create mode 100644 pkgs/development/python-modules/tatsu/default.nix

diff --git a/pkgs/development/python-modules/tatsu/default.nix b/pkgs/development/python-modules/tatsu/default.nix
new file mode 100644
index 000000000000..539cbdca3ee1
--- /dev/null
+++ b/pkgs/development/python-modules/tatsu/default.nix
@@ -0,0 +1,40 @@
+{ stdenv, buildPythonPackage, fetchFromGitHub, pythonOlder
+, colorama, mypy, pyyaml, regex
+, dataclasses, typing
+, pytestrunner, pytest-mypy
+}:
+
+buildPythonPackage rec {
+  pname = "TatSu";
+  version = "4.4.0";
+
+  src = fetchFromGitHub {
+    owner = "neogeny";
+    repo = pname;
+    rev = "v${version}";
+    sha256 = "1jjd73yr3x56ij2ggxf6s62mf90i9v7wn3i0h67zxys55hlp2yh4";
+  };
+
+  nativeBuildInputs = [ pytestrunner ];
+  propagatedBuildInputs = [ colorama mypy pyyaml regex ]
+    ++ stdenv.lib.optionals (pythonOlder "3.7") [ dataclasses ]
+    ++ stdenv.lib.optionals (pythonOlder "3.5") [ typing ];
+  checkInputs = [ pytest-mypy ];
+
+  checkPhase = ''
+    pytest test/
+  '';
+
+  meta = with stdenv.lib; {
+    description = "Generates Python parsers from grammars in a variation of EBNF";
+    longDescription = ''
+      TatSu (the successor to Grako) is a tool that takes grammars in a
+      variation of EBNF as input, and outputs memoizing (Packrat) PEG parsers in
+      Python.
+    '';
+    homepage = "https://tatsu.readthedocs.io/";
+    license = licenses.bsd2;
+    maintainers = with maintainers; [ primeos ];
+  };
+
+}
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index 82293c8a5714..11387381d02f 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -5054,6 +5054,8 @@ in {
 
   tasklib = callPackage ../development/python-modules/tasklib { };
 
+  tatsu = callPackage ../development/python-modules/tatsu { };
+
   tempita = callPackage ../development/python-modules/tempita { };
 
   terminado = callPackage ../development/python-modules/terminado { };

From f2be56eedc5d9e62eba1770116b98b683ac3bed3 Mon Sep 17 00:00:00 2001
From: Michael Weiss <dev.primeos@gmail.com>
Date: Sat, 14 Sep 2019 17:42:11 +0200
Subject: [PATCH 24/38] python37Packages.ics: init at 0.6

---
 .../python-modules/ics/default.nix            | 33 +++++++++++++++++++
 pkgs/top-level/python-packages.nix            |  2 ++
 2 files changed, 35 insertions(+)
 create mode 100644 pkgs/development/python-modules/ics/default.nix

diff --git a/pkgs/development/python-modules/ics/default.nix b/pkgs/development/python-modules/ics/default.nix
new file mode 100644
index 000000000000..20fb38b187c0
--- /dev/null
+++ b/pkgs/development/python-modules/ics/default.nix
@@ -0,0 +1,33 @@
+{ stdenv, buildPythonPackage, fetchFromGitHub, pythonOlder
+, tatsu, arrow
+, pytest-sugar, pytestpep8, pytest-flakes, pytestcov
+}:
+
+buildPythonPackage rec {
+  pname = "ics";
+  version = "0.6";
+
+  src = fetchFromGitHub {
+    owner = "C4ptainCrunch";
+    repo = "ics.py";
+    rev = "v${version}";
+    sha256 = "02bs9wlh40p1n33jchrl2cdpsnm5hq84070by3b6gm0vmgz6gn5v";
+  };
+
+  propagatedBuildInputs = [ tatsu arrow ];
+  checkInputs = [ pytest-sugar pytestpep8 pytest-flakes pytestcov ];
+
+  disabled = pythonOlder "3.6";
+
+  meta = with stdenv.lib; {
+    description = "Pythonic and easy iCalendar library (RFC 5545)";
+    longDescription = ''
+      Ics.py is a pythonic and easy iCalendar library. Its goals are to read and
+      write ics data in a developer friendly way.
+    '';
+    homepage = "http://icspy.readthedocs.org/en/stable/";
+    license = licenses.asl20;
+    maintainers = with maintainers; [ primeos ];
+  };
+
+}
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index 11387381d02f..a52e709248d4 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -3492,6 +3492,8 @@ in {
 
   icalendar = callPackage ../development/python-modules/icalendar { };
 
+  ics = callPackage ../development/python-modules/ics { };
+
   ifaddr = callPackage ../development/python-modules/ifaddr { };
 
   imageio = callPackage ../development/python-modules/imageio { };

From aa3fcab821a7ede594d888d26dc71af8dbd83a2d Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Tue, 22 Oct 2019 19:33:36 -0700
Subject: [PATCH 25/38] python37Packages.pelican: 4.1.1 -> 4.2.0

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/python3.7-pelican/versions
---
 pkgs/development/python-modules/pelican/default.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/development/python-modules/pelican/default.nix b/pkgs/development/python-modules/pelican/default.nix
index cbda650158b5..7066ecd3a527 100644
--- a/pkgs/development/python-modules/pelican/default.nix
+++ b/pkgs/development/python-modules/pelican/default.nix
@@ -6,13 +6,13 @@
 
 buildPythonPackage rec {
   pname = "pelican";
-  version = "4.1.1";
+  version = "4.2.0";
 
   src = fetchFromGitHub {
     owner = "getpelican";
     repo = "pelican";
     rev = version;
-    sha256 = "08lwbkgqdf6qx9vg17qj70k7nz2j34ymlnrc4cbz7xj98cw4ams1";
+    sha256 = "0w9nqdw2jmqc6kqwg4rh6irr5k6j7hk8axg6vgd137rs50v62yv5";
     # Remove unicode file names which leads to different checksums on HFS+
     # vs. other filesystems because of unicode normalisation.
     extraPostFetch = ''
@@ -31,7 +31,7 @@ buildPythonPackage rec {
     glibcLocales
     # Note: Pelican has to adapt to a changed CLI of pandoc before enabling this
     # again. Compare https://github.com/getpelican/pelican/pull/2252.
-    # Version 4.1.1 is incompatible with our current pandoc version.
+    # Version 4.2.0 is incompatible with our current pandoc version.
     # pandoc
     git
     mock

From 62199af908d1553a5ae5dbd89c95038692ff3d9a Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Wed, 23 Oct 2019 00:06:58 -0700
Subject: [PATCH 26/38] python37Packages.jaraco_collections: 2.0 -> 2.1

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/python3.7-jaraco.collections/versions
---
 .../development/python-modules/jaraco_collections/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/jaraco_collections/default.nix b/pkgs/development/python-modules/jaraco_collections/default.nix
index 8fde41e9b499..ceaa46a7847e 100644
--- a/pkgs/development/python-modules/jaraco_collections/default.nix
+++ b/pkgs/development/python-modules/jaraco_collections/default.nix
@@ -4,10 +4,10 @@
 
 buildPythonPackage rec {
   pname = "jaraco.collections";
-  version = "2.0";
+  version = "2.1";
   src = fetchPypi {
     inherit pname version;
-    sha256 = "eb43fb9a7b29cff20767caf838c14bdf80a89395aba67a97d61c8f16e0e22c97";
+    sha256 = "0z1kmgf8jahx42bmflmj030wl8yrksw5b5ghcpayrqd5221jfk0f";
   };
 
   doCheck = false;

From b54a6011047f1641657ca44f3863f3d2159e5d3c Mon Sep 17 00:00:00 2001
From: Serhii Khoma <srghma@gmail.com>
Date: Sun, 27 Oct 2019 20:37:44 +0200
Subject: [PATCH 27/38] hubstaff: 1.4.11 -> 1.5.0

---
 pkgs/applications/misc/hubstaff/revision.json | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/applications/misc/hubstaff/revision.json b/pkgs/applications/misc/hubstaff/revision.json
index 64cad5c02928..31d26559dd2d 100644
--- a/pkgs/applications/misc/hubstaff/revision.json
+++ b/pkgs/applications/misc/hubstaff/revision.json
@@ -1,5 +1,5 @@
 {
-  "url": "https://hubstaff-production.s3.amazonaws.com/downloads/HubstaffClient/Builds/Release/1.4.11-a12e5bad/Hubstaff-1.4.11-a12e5bad.sh",
-  "version": "1.4.11-a12e5bad",
-  "sha256": "0nqmw02spplqppvz2jniq5p5y69l8n5xp9wji4032kn4qsba33jn"
+  "url": "https://hubstaff-production.s3.amazonaws.com/downloads/HubstaffClient/Builds/Release/1.5.0-4309ed45/Hubstaff-1.5.0-4309ed45.sh",
+  "version": "1.5.0-4309ed45",
+  "sha256": "1rfxizb28b8r344d18jh6shfcxz35vx8vh10c3j6zdcc998zkcr1"
 }

From 4641f957913f8a69b774111e0fc5c0cd30e5d26f Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Wed, 23 Oct 2019 16:21:45 -0700
Subject: [PATCH 28/38] rabbitmq-server: 3.7.18 -> 3.8.0

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/rabbitmq-server/versions
---
 pkgs/servers/amqp/rabbitmq-server/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/servers/amqp/rabbitmq-server/default.nix b/pkgs/servers/amqp/rabbitmq-server/default.nix
index da60a122a4ca..12211f496988 100644
--- a/pkgs/servers/amqp/rabbitmq-server/default.nix
+++ b/pkgs/servers/amqp/rabbitmq-server/default.nix
@@ -6,12 +6,12 @@
 stdenv.mkDerivation rec {
   pname = "rabbitmq-server";
 
-  version = "3.7.18";
+  version = "3.8.0";
 
   # when updating, consider bumping elixir version in all-packages.nix
   src = fetchurl {
     url = "https://github.com/rabbitmq/rabbitmq-server/releases/download/v${version}/${pname}-${version}.tar.xz";
-    sha256 = "1vzx9g2k7ynbv2gz450cwjyxcn3vcxsmlpnvq1r5wzcf25giy9ky";
+    sha256 = "174ai8ihk50gwbqinxxxx5is6izvgmfca7skvvp4yk6fl8nbwm15";
   };
 
   buildInputs =

From d44842120e8d0609d863a16ed85258a20e85160c Mon Sep 17 00:00:00 2001
From: Ben Wolsieffer <benwolsieffer@gmail.com>
Date: Mon, 28 Oct 2019 00:04:15 -0400
Subject: [PATCH 29/38] hdf5: don't force GCC 7 (#72124)

---
 pkgs/top-level/all-packages.nix | 1 -
 1 file changed, 1 deletion(-)

diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index bd6a4899729b..a75d9c6adb7f 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -3826,7 +3826,6 @@ in
   };
 
   hdf5 = callPackage ../tools/misc/hdf5 {
-    stdenv = gcc7Stdenv;
     gfortran = null;
     szip = null;
     mpi = null;

From eab20ca018567f26d93e3d0dda583d072607af4f Mon Sep 17 00:00:00 2001
From: Jan Tojnar <jtojnar@gmail.com>
Date: Mon, 28 Oct 2019 03:23:28 +0100
Subject: [PATCH 30/38] =?UTF-8?q?gtranslator:=203.32.1=20=E2=86=92=203.34.?=
 =?UTF-8?q?0?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

---
 pkgs/tools/text/gtranslator/default.nix | 8 ++++++--
 1 file changed, 6 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/text/gtranslator/default.nix b/pkgs/tools/text/gtranslator/default.nix
index 69924bb234b5..b871ac6ffaa0 100644
--- a/pkgs/tools/text/gtranslator/default.nix
+++ b/pkgs/tools/text/gtranslator/default.nix
@@ -9,6 +9,8 @@
 , wrapGAppsHook
 , libxml2
 , libgda
+, libsoup
+, json-glib
 , gspell
 , glib
 , gtk3
@@ -19,11 +21,11 @@
 
 stdenv.mkDerivation rec {
   pname = "gtranslator";
-  version = "3.32.1";
+  version = "3.34.0";
 
   src = fetchurl {
     url = "mirror://gnome/sources/${pname}/${stdenv.lib.versions.majorMinor version}/${pname}-${version}.tar.xz";
-    sha256 = "1nmlj41wm02lbgrxdlpqpcgdab5cxsvggvqnk43v6kk86q27pcz1";
+    sha256 = "05zvpx330h9k7b12p07bhcy47vq66260fmiph2b6h97xpl15rwmj";
   };
 
   nativeBuildInputs = [
@@ -42,6 +44,8 @@ stdenv.mkDerivation rec {
     gtk3
     gtksourceview4
     libgda
+    libsoup
+    json-glib
     gettext
     gspell
     gsettings-desktop-schemas

From 4fbb0a375d38676516253992fed6125db8f50dd7 Mon Sep 17 00:00:00 2001
From: devhell <devhell@mailfresser.de>
Date: Sun, 27 Oct 2019 21:08:18 +0000
Subject: [PATCH 31/38] profanity: 0.7.0 -> 0.7.1

Changelog: https://github.com/profanity-im/profanity/releases

Signed-off-by: devhell <devhell@mailfresser.de>
---
 .../networking/instant-messengers/profanity/default.nix       | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/networking/instant-messengers/profanity/default.nix b/pkgs/applications/networking/instant-messengers/profanity/default.nix
index 02be3c24e512..8281e3b606a7 100644
--- a/pkgs/applications/networking/instant-messengers/profanity/default.nix
+++ b/pkgs/applications/networking/instant-messengers/profanity/default.nix
@@ -22,13 +22,13 @@ with stdenv.lib;
 
 stdenv.mkDerivation rec {
   pname = "profanity";
-  version = "0.7.0";
+  version = "0.7.1";
 
   src = fetchFromGitHub {
     owner = "profanity-im";
     repo = "profanity";
     rev = version;
-    sha256 = "15adg7ndjkzy04lizjmnvv0pf0snhzp6a8x74mndcm0zma0dia0z";
+    sha256 = "1mcgr86wqyzqx7mqxfkk2jwx6cgnvrky3zi4v1ww0lh6j05wj9gf";
   };
 
   patches = [ ./patches/packages-osx.patch ./patches/undefined-macros.patch ];

From cbeb6570ace1a60a846ac8d6ad701f7ec0732329 Mon Sep 17 00:00:00 2001
From: xrelkd <46590321+xrelkd@users.noreply.github.com>
Date: Mon, 28 Oct 2019 13:01:32 +0800
Subject: [PATCH 32/38] firectl: init at 0.1.0

---
 .../virtualization/firectl/default.nix        | 23 +++++++++++++++++++
 pkgs/top-level/all-packages.nix               |  2 ++
 2 files changed, 25 insertions(+)
 create mode 100644 pkgs/applications/virtualization/firectl/default.nix

diff --git a/pkgs/applications/virtualization/firectl/default.nix b/pkgs/applications/virtualization/firectl/default.nix
new file mode 100644
index 000000000000..1f74318f2dde
--- /dev/null
+++ b/pkgs/applications/virtualization/firectl/default.nix
@@ -0,0 +1,23 @@
+{ stdenv, buildGoModule, fetchFromGitHub }:
+
+buildGoModule rec {
+  pname = "firectl";
+  version = "0.1.0";
+
+  src = fetchFromGitHub {
+    owner = "firecracker-microvm";
+    repo = pname;
+    rev = "v${version}";
+    sha256 = "1ni3yx4rjhrkqk2038c6hkb2jwsdj2llx233wd5wgpvb6c57652p";
+  };
+
+  modSha256 = "1nqjz1afklcxc3xcpmygjdh3lfxjk6zvmghr8z8fr3nw2wvw2ddr";
+
+  meta = with stdenv.lib; {
+    description = "A command-line tool to run Firecracker microVMs";
+    homepage = https://github.com/firecracker-microvm/firectl;
+    license = licenses.asl20;
+    platforms = platforms.linux;
+    maintainers = with maintainers; [ xrelkd ];
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index a75d9c6adb7f..df4bb233a044 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -1655,6 +1655,8 @@ in
 
   firecracker = callPackage ../applications/virtualization/firecracker { };
 
+  firectl = callPackage ../applications/virtualization/firectl { };
+
   firestarter = callPackage ../applications/misc/firestarter { };
 
   fsmon = callPackage ../tools/misc/fsmon { };

From ac2d736b3ad8c3fec43a5d3ae2389a2602645400 Mon Sep 17 00:00:00 2001
From: lumi <lumi@pew.im>
Date: Sun, 27 Oct 2019 15:01:59 +0100
Subject: [PATCH 33/38] shotgun: init at 2.2.0

---
 maintainers/maintainer-list.nix         |  5 +++++
 pkgs/tools/graphics/shotgun/default.nix | 28 +++++++++++++++++++++++++
 pkgs/top-level/all-packages.nix         |  2 ++
 3 files changed, 35 insertions(+)
 create mode 100644 pkgs/tools/graphics/shotgun/default.nix

diff --git a/maintainers/maintainer-list.nix b/maintainers/maintainer-list.nix
index 33d791142d19..8e2bda71dc02 100644
--- a/maintainers/maintainer-list.nix
+++ b/maintainers/maintainer-list.nix
@@ -3911,6 +3911,11 @@
     githubId = 13791;
     name = "Luke Gorrie";
   };
+  lumi = {
+    email = "lumi@pew.im";
+    github = "lumi-me-not";
+    name = "lumi";
+  };
   luz = {
     email = "luz666@daum.net";
     github = "Luz";
diff --git a/pkgs/tools/graphics/shotgun/default.nix b/pkgs/tools/graphics/shotgun/default.nix
new file mode 100644
index 000000000000..1ab47dfce2de
--- /dev/null
+++ b/pkgs/tools/graphics/shotgun/default.nix
@@ -0,0 +1,28 @@
+{ lib, stdenv, fetchFromGitHub, rustPlatform, pkg-config, libXrandr, libX11 }:
+
+rustPlatform.buildRustPackage rec {
+  pname = "shotgun";
+  version = "2.2.0";
+
+  nativeBuildInputs = [ pkg-config ];
+
+  buildInputs = [ libXrandr libX11 ];
+
+  src = fetchFromGitHub {
+    owner = "neXromancers";
+    repo = pname;
+    rev = "v${version}";
+    sha256 = "tJnF1X+NI1hP0J/n3rGy8TD/yIveqRPVlJvJvn0C7Do=";
+  };
+
+  cargoSha256 = "TL2WehcCwygLMVVrBHOX1HgVtDhgVsIgUeiadEjCj1o=";
+
+  meta = with lib; {
+    description = "Minimal X screenshot utility";
+    homepage = "https://github.com/neXromancers/shotgun";
+    license = with licenses; [ mpl20 ];
+    maintainers = with maintainers; [ lumi ];
+    platforms = platforms.linux;
+    badPlatforms = [ "aarch64-linux" ];
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index df4bb233a044..bdf78df7be69 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -20714,6 +20714,8 @@ in
 
   shfmt = callPackage ../tools/text/shfmt { };
 
+  shotgun = callPackage ../tools/graphics/shotgun {};
+
   shutter = callPackage ../applications/graphics/shutter { };
 
   simple-scan = gnome3.simple-scan;

From c5ed4a8b2902aaf519f037742cae03f224f0cc1a Mon Sep 17 00:00:00 2001
From: Pavol Rusnak <pavol@rusnak.io>
Date: Sun, 27 Oct 2019 16:55:05 +0100
Subject: [PATCH 34/38] pythonPackages.py3buddy: cleanup, call toPythonModule

---
 pkgs/development/python-modules/py3buddy/default.nix | 8 ++++----
 pkgs/top-level/python-packages.nix                   | 2 +-
 2 files changed, 5 insertions(+), 5 deletions(-)

diff --git a/pkgs/development/python-modules/py3buddy/default.nix b/pkgs/development/python-modules/py3buddy/default.nix
index 69c4c46dbc9c..459922c9bafd 100644
--- a/pkgs/development/python-modules/py3buddy/default.nix
+++ b/pkgs/development/python-modules/py3buddy/default.nix
@@ -22,17 +22,17 @@ stdenv.mkDerivation rec {
   dontCheck = true;
 
   installPhase = ''
-    install -D py3buddy.py $out/lib/${python.libPrefix}/site-packages/py3buddy.py
+    install -D py3buddy.py $out/${python.sitePackages}/py3buddy.py
   '';
 
   postInstall = ''
     install -D 99-ibuddy.rules $out/lib/udev/rules.d/99-ibuddy.rules
   '';
 
-  meta = {
+  meta = with stdenv.lib; {
     description = "Code to work with the iBuddy MSN figurine";
     homepage = "https://github.com/armijnhemel/py3buddy";
-    license = with stdenv.lib.licenses; [ mit ];
-    maintainers = with stdenv.lib.maintainers; [ prusnak ];
+    license = with licenses; [ mit ];
+    maintainers = with maintainers; [ prusnak ];
   };
 }
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index ed70074a86da..5101d2c082fd 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -906,7 +906,7 @@ in {
 
   pybind11 = callPackage ../development/python-modules/pybind11 { };
 
-  py3buddy = callPackage ../development/python-modules/py3buddy { };
+  py3buddy = toPythonModule (callPackage ../development/python-modules/py3buddy { });
 
   pybullet = callPackage ../development/python-modules/pybullet { };
 

From 7d43ee015a1649bb4ae4751b7ccb4908b25a6c15 Mon Sep 17 00:00:00 2001
From: Pawel Kruszewski <kruszewsky@gmail.com>
Date: Sat, 26 Oct 2019 08:37:25 +0200
Subject: [PATCH 35/38] bcompare: 4.3.0.24364 -> 4.3.1.24438

---
 pkgs/applications/version-management/bcompare/default.nix | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

diff --git a/pkgs/applications/version-management/bcompare/default.nix b/pkgs/applications/version-management/bcompare/default.nix
index ef7c0cace8f7..8c82ed1d4510 100644
--- a/pkgs/applications/version-management/bcompare/default.nix
+++ b/pkgs/applications/version-management/bcompare/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   pname = "bcompare";
-  version = "4.3.0.24364";
+  version = "4.3.1.24438";
 
   src = fetchurl {
     url = "https://www.scootersoftware.com/${pname}-${version}_amd64.deb";
-    sha256 = "14ff250nyqfqgm9qazg4la7ajci3bhqm376wy2j3za1vf09774kc";
+    sha256 = "19rbcl0l49qbzn4bisdl9ibj0qm83kjkclva4qcy7jaqna9g7qrh";
   };
 
   unpackPhase = ''
@@ -43,7 +43,6 @@ stdenv.mkDerivation rec {
     ki18n
     kcoreaddons
     gdk-pixbuf
-    qt4
     bzip2
   ];
 

From 9f26063077a9f7e762ca01556dd27b08c671f16e Mon Sep 17 00:00:00 2001
From: Vincent Laporte <Vincent.Laporte@gmail.com>
Date: Sun, 20 Oct 2019 20:31:10 +0000
Subject: [PATCH 36/38] ocamlPackages.ke: init at 0.4

---
 pkgs/development/ocaml-modules/ke/default.nix | 28 +++++++++++++++++++
 pkgs/top-level/ocaml-packages.nix             |  2 ++
 2 files changed, 30 insertions(+)
 create mode 100644 pkgs/development/ocaml-modules/ke/default.nix

diff --git a/pkgs/development/ocaml-modules/ke/default.nix b/pkgs/development/ocaml-modules/ke/default.nix
new file mode 100644
index 000000000000..e1b68a1d2da4
--- /dev/null
+++ b/pkgs/development/ocaml-modules/ke/default.nix
@@ -0,0 +1,28 @@
+{ lib, buildDunePackage, fetchurl
+, bigarray-compat, fmt
+, alcotest, bigstringaf
+}:
+
+buildDunePackage rec {
+  pname = "ke";
+  version = "0.4";
+
+  src = fetchurl {
+    url = "https://github.com/mirage/ke/releases/download/v${version}/ke-v${version}.tbz";
+    sha256 = "13c9xy60vmq29mnwpg3h3zgl6gjbjfwbx1s0crfc6xwvark0zxnx";
+  };
+
+  propagatedBuildInputs = [ bigarray-compat fmt ];
+
+  checkInputs = lib.optionals doCheck [ alcotest bigstringaf ];
+  doCheck = true;
+
+  minimumOCamlVersion = "4.03";
+
+  meta = {
+    description = "Fast implementation of queue in OCaml";
+    homepage = "https://github.com/mirage/ke";
+    license = lib.licenses.mit;
+    maintainers = [ lib.maintainers.vbgl ];
+  };
+}
diff --git a/pkgs/top-level/ocaml-packages.nix b/pkgs/top-level/ocaml-packages.nix
index d463a4046498..8b5d61b61491 100644
--- a/pkgs/top-level/ocaml-packages.nix
+++ b/pkgs/top-level/ocaml-packages.nix
@@ -362,6 +362,8 @@ let
 
     jsonm = callPackage ../development/ocaml-modules/jsonm { };
 
+    ke = callPackage ../development/ocaml-modules/ke { };
+
     lablgl = callPackage ../development/ocaml-modules/lablgl { };
 
     lablgtk3 = callPackage ../development/ocaml-modules/lablgtk3 { };

From ea5684b438947cdfd886e0baae80146dd485b4e9 Mon Sep 17 00:00:00 2001
From: Vincent Laporte <Vincent.Laporte@gmail.com>
Date: Sun, 20 Oct 2019 20:31:33 +0000
Subject: [PATCH 37/38] ocamlPackages.encore: init at 0.3

---
 .../ocaml-modules/encore/default.nix          | 20 +++++++++++++++++++
 pkgs/top-level/ocaml-packages.nix             |  2 ++
 2 files changed, 22 insertions(+)
 create mode 100644 pkgs/development/ocaml-modules/encore/default.nix

diff --git a/pkgs/development/ocaml-modules/encore/default.nix b/pkgs/development/ocaml-modules/encore/default.nix
new file mode 100644
index 000000000000..ab91117ac082
--- /dev/null
+++ b/pkgs/development/ocaml-modules/encore/default.nix
@@ -0,0 +1,20 @@
+{ lib, buildDunePackage, fetchurl, ocaml, alcotest, angstrom, ke }:
+
+buildDunePackage rec {
+  pname = "encore";
+  version = "0.3";
+  src = fetchurl {
+    url = "https://github.com/mirage/encore/releases/download/v${version}/encore-v${version}.tbz";
+    sha256 = "05nv6yms5axsmq9cspr7884rz5kirj50izx3vdm89q4yl186qykl";
+  };
+  propagatedBuildInputs = [ angstrom ke ];
+  checkInputs = lib.optional doCheck alcotest;
+  doCheck = lib.versions.majorMinor ocaml.version != "4.07";
+
+  meta = {
+    homepage = "https://github.com/mirage/encore";
+    description = "Library to generate encoder/decoder which ensure isomorphism";
+    license = lib.licenses.mit;
+    maintainers = [ lib.maintainers.vbgl ];
+  };
+}
diff --git a/pkgs/top-level/ocaml-packages.nix b/pkgs/top-level/ocaml-packages.nix
index 8b5d61b61491..10b4d03b70ad 100644
--- a/pkgs/top-level/ocaml-packages.nix
+++ b/pkgs/top-level/ocaml-packages.nix
@@ -233,6 +233,8 @@ let
 
     elpi = callPackage ../development/ocaml-modules/elpi { };
 
+    encore = callPackage ../development/ocaml-modules/encore { };
+
     enumerate = callPackage ../development/ocaml-modules/enumerate { };
 
     eqaf = callPackage ../development/ocaml-modules/eqaf { };

From 8dc21739057079bdd749537dccb1fa31205ff0ff Mon Sep 17 00:00:00 2001
From: Vincent Laporte <Vincent.Laporte@gmail.com>
Date: Mon, 21 Oct 2019 05:36:52 +0000
Subject: [PATCH 38/38] =?UTF-8?q?ocamlPackages.decompress:=200.6=20?=
 =?UTF-8?q?=E2=86=92=200.9.0?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

ocamlPackages.git: 1.11.5 → 2.1.0

ocamlPackages.imagelib: 20171028 → 20191011

ocamlPackages.imagelib-unix: init
---
 .../ocaml-modules/checkseum/default.nix       |  2 +
 .../ocaml-modules/decompress/default.nix      | 37 +++++++++----------
 .../development/ocaml-modules/git/default.nix | 19 +++++-----
 .../ocaml-modules/imagelib/default.nix        | 25 +++++++------
 .../ocaml-modules/imagelib/unix.nix           |  8 ++++
 pkgs/top-level/ocaml-packages.nix             |  4 +-
 6 files changed, 53 insertions(+), 42 deletions(-)
 create mode 100644 pkgs/development/ocaml-modules/imagelib/unix.nix

diff --git a/pkgs/development/ocaml-modules/checkseum/default.nix b/pkgs/development/ocaml-modules/checkseum/default.nix
index 0e348dd65c38..18e06d260f4e 100644
--- a/pkgs/development/ocaml-modules/checkseum/default.nix
+++ b/pkgs/development/ocaml-modules/checkseum/default.nix
@@ -29,6 +29,8 @@ stdenv.mkDerivation rec {
 
   inherit (dune) installPhase;
 
+  passthru = { inherit hasC; };
+
   meta = {
     homepage = "https://github.com/mirage/checkseum";
     description = "ADLER-32 and CRC32C Cyclic Redundancy Check";
diff --git a/pkgs/development/ocaml-modules/decompress/default.nix b/pkgs/development/ocaml-modules/decompress/default.nix
index 70ec7fd34ae1..828d3a98f9de 100644
--- a/pkgs/development/ocaml-modules/decompress/default.nix
+++ b/pkgs/development/ocaml-modules/decompress/default.nix
@@ -1,30 +1,27 @@
-{ stdenv, fetchFromGitHub, ocaml, findlib, ocamlbuild, topkg
+{ lib, fetchurl, buildDunePackage
+, checkseum, cmdliner
+, alcotest, bos, camlzip, mmap, re
 }:
 
-if !stdenv.lib.versionAtLeast ocaml.version "4.03"
-then throw "decompress is not available for OCaml ${ocaml.version}"
-else
+buildDunePackage rec {
+	version = "0.9.0";
+	pname = "decompress";
 
-stdenv.mkDerivation rec {
-	version = "0.6";
-	name = "ocaml${ocaml.version}-decompress-${version}";
-
-	src = fetchFromGitHub {
-		owner = "mirage";
-		repo = "decompress";
-		rev = "v${version}";
-		sha256 = "0hfs5zrvimzvjwdg57vrxx9bb7irvlm07dk2yv3s5qhj30zimd08";
+	src = fetchurl {
+		url = "https://github.com/mirage/decompress/releases/download/v${version}/decompress-v${version}.tbz";
+		sha256 = "0fryhcvv96vfca51c7kqdn3n3canqsbbvfbi75ya6lca4lmpipbh";
 	};
 
-	buildInputs = [ ocaml findlib ocamlbuild topkg ];
-
-	inherit (topkg) buildPhase installPhase;
+	buildInputs = [ cmdliner ];
+	propagatedBuildInputs = [ checkseum ];
+	checkInputs = lib.optionals doCheck [ alcotest bos camlzip mmap re ];
+	doCheck = true;
 
 	meta = {
 		description = "Pure OCaml implementation of Zlib";
-		license = stdenv.lib.licenses.mit;
-		maintainers = [ stdenv.lib.maintainers.vbgl ];
-		inherit (src.meta) homepage;
-		inherit (ocaml.meta) platforms;
+		license = lib.licenses.mit;
+		maintainers = [ lib.maintainers.vbgl ];
+		homepage = "https://github.com/mirage/decompress";
+		broken = !checkseum.hasC;
 	};
 }
diff --git a/pkgs/development/ocaml-modules/git/default.nix b/pkgs/development/ocaml-modules/git/default.nix
index 35f8f5d52e94..929382abe76b 100644
--- a/pkgs/development/ocaml-modules/git/default.nix
+++ b/pkgs/development/ocaml-modules/git/default.nix
@@ -1,27 +1,28 @@
-{ stdenv, fetchFromGitHub, buildDunePackage
-, astring, decompress, fmt, hex, logs, mstruct, ocaml_lwt, ocamlgraph, ocplib-endian, uri
-, alcotest, mtime, nocrypto
+{ lib, fetchFromGitHub, buildDunePackage
+, alcotest, git, mtime, nocrypto
+, angstrom, astring, cstruct, decompress, digestif, encore, duff, fmt
+, fpath, hex, ke, logs, lru, ocaml_lwt, ocamlgraph, ocplib-endian, uri, rresult
 }:
 
 buildDunePackage rec {
   pname = "git";
-	version = "1.11.5";
+	version = "2.1.0";
 
 	src = fetchFromGitHub {
 		owner = "mirage";
 		repo = "ocaml-git";
 		rev = version;
-		sha256 = "0r1bxpxjjnl9hh8xbabsxl7svzvd19hfy73a2y1m4kljmw64dpfh";
+		sha256 = "0v55zkwgml6i5hp0kzynbi58z6j15k3qgzg06b3h8pdbv5fwd1jp";
 	};
 
-	buildInputs = [ alcotest mtime nocrypto ];
-	propagatedBuildInputs = [ astring decompress fmt hex logs mstruct ocaml_lwt ocamlgraph ocplib-endian uri ];
+	propagatedBuildInputs = [ angstrom astring cstruct decompress digestif encore duff fmt fpath hex ke logs lru ocaml_lwt ocamlgraph ocplib-endian uri rresult ];
+	checkInputs = lib.optionals doCheck [ alcotest git mtime nocrypto ];
 	doCheck = true;
 
 	meta = {
 		description = "Git format and protocol in pure OCaml";
-		license = stdenv.lib.licenses.isc;
-		maintainers = [ stdenv.lib.maintainers.vbgl ];
+		license = lib.licenses.isc;
+		maintainers = [ lib.maintainers.vbgl ];
 		inherit (src.meta) homepage;
 	};
 }
diff --git a/pkgs/development/ocaml-modules/imagelib/default.nix b/pkgs/development/ocaml-modules/imagelib/default.nix
index 77b18f0ce3a9..12b8a757e16f 100644
--- a/pkgs/development/ocaml-modules/imagelib/default.nix
+++ b/pkgs/development/ocaml-modules/imagelib/default.nix
@@ -1,26 +1,27 @@
-{ stdenv, fetchFromGitHub, which, ocaml, findlib, ocamlbuild, decompress }:
+{ lib, fetchFromGitHub, fetchpatch, buildDunePackage, decompress }:
 
-stdenv.mkDerivation rec {
-  version = "20171028";
-  name = "ocaml${ocaml.version}-imagelib-${version}";
+buildDunePackage rec {
+  minimumOCamlVersion = "4.07";
+  version = "20191011";
+  pname = "imagelib";
   src = fetchFromGitHub {
     owner = "rlepigre";
     repo = "ocaml-imagelib";
-    rev = "ocaml-imagelib_${version}";
-    sha256 = "1frkrgcrv4ybdmqcfxpfsywx0hm1arxgxp32n8kzky6qip1g0zxf";
+    rev = "03fed7733825cef7e0465163f398f6af810e2e75";
+    sha256 = "0h7vgyss42nhlfqpbdnb54nxq86rskqi2ilx8b87r0hi19hqx463";
   };
 
-  buildInputs = [ which ocaml findlib ocamlbuild ];
+  patches = [ (fetchpatch {
+    url = "https://github.com/rlepigre/ocaml-imagelib/pull/24/commits/4704fd44adcda62e0d96ea5b1927071326aa6111.patch";
+    sha256 = "0ipjab1hfa2v2pnd8g1k3q2ia0plgiw7crm3fa4w2aqpzdyabkb9";
+  }) ];
 
   propagatedBuildInputs = [ decompress ];
 
-  createFindlibDestdir = true;
-
   meta = {
     description = "Image formats such as PNG and PPM in OCaml";
-    license = stdenv.lib.licenses.lgpl3;
-    maintainers = [ stdenv.lib.maintainers.vbgl ];
+    license = lib.licenses.lgpl3;
+    maintainers = [ lib.maintainers.vbgl ];
     inherit (src.meta) homepage;
-    inherit (ocaml.meta) platforms;
   };
 }
diff --git a/pkgs/development/ocaml-modules/imagelib/unix.nix b/pkgs/development/ocaml-modules/imagelib/unix.nix
new file mode 100644
index 000000000000..48986b15a8f8
--- /dev/null
+++ b/pkgs/development/ocaml-modules/imagelib/unix.nix
@@ -0,0 +1,8 @@
+{ buildDunePackage, imagelib }:
+
+buildDunePackage {
+  pname = "imagelib-unix";
+  inherit (imagelib) version src meta;
+
+  propagatedBuildInputs = [ imagelib ];
+}
diff --git a/pkgs/top-level/ocaml-packages.nix b/pkgs/top-level/ocaml-packages.nix
index 10b4d03b70ad..f2baa2b2a9ee 100644
--- a/pkgs/top-level/ocaml-packages.nix
+++ b/pkgs/top-level/ocaml-packages.nix
@@ -289,6 +289,8 @@ let
 
     imagelib = callPackage ../development/ocaml-modules/imagelib { };
 
+    imagelib-unix = callPackage ../development/ocaml-modules/imagelib/unix.nix { };
+
     inotify = callPackage ../development/ocaml-modules/inotify { };
 
     integers = callPackage ../development/ocaml-modules/integers { };
@@ -316,7 +318,7 @@ let
 
     gg = callPackage ../development/ocaml-modules/gg { };
 
-    git = callPackage ../development/ocaml-modules/git { };
+    git = callPackage ../development/ocaml-modules/git { inherit (pkgs) git; };
 
     git-http = callPackage ../development/ocaml-modules/git-http { };