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sage: import sphinx and sympy update patches, update pari 2.13 patch

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This commit is contained in:
Mauricio Collares 2021-06-30 18:20:22 -03:00
parent 289d84a58e
commit 17e024867f
2 changed files with 37 additions and 30 deletions
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13
pkgs/applications/science/math/sage/patches/sphinx-3.5-code-output.patch
View File

@ -1,13 +0,0 @@
diff --git a/src/sage/misc/sagedoc.py b/src/sage/misc/sagedoc.py
index 6bad826a88..f4d7b8651c 100644
--- a/src/sage/misc/sagedoc.py
+++ b/src/sage/misc/sagedoc.py
@@ -24,7 +24,7 @@ see :trac:`12849`::
....: for line in fobj:
....: if "#sage.symbolic.expression.Expression.numerical_approx" in line:
....: print(line)
- <code class="sig-name descname">numerical_approx</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">prec</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">digits</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">algorithm</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span>...
+ <code class="sig-name descname"><span class="pre">numerical_approx</span></code><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">prec</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">digits</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">algorithm</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span>...
Check that sphinx is not imported at Sage start-up::

54
pkgs/applications/science/math/sage/sage-src.nix
View File

@ -16,7 +16,12 @@ let
fetchSageDiff = { base, name, rev, sha256, ...}@args: (
fetchpatch ({
inherit name sha256;
url = "https://git.sagemath.org/sage.git/patch?id2=${base}&id=${rev}";
# We used to use
# "https://git.sagemath.org/sage.git/patch?id2=${base}&id=${rev}"
# but the former way does not squash multiple patches together.
url = "https://github.com/sagemath/sage/compare/${base}...${rev}.diff";
# We don't care about sage's own build system (which builds all its dependencies).
# Exclude build system changes to avoid conflicts.
excludes = [ "build/*" ];
@ -79,13 +84,6 @@ stdenv.mkDerivation rec {
# ignore a deprecation warning for usage of `cmp` in the attrs library in the doctests
./patches/ignore-cmp-deprecation.patch
# sphinx 3.5 pretty-prints code slightly differently than sphinx
# 3.1--3.3. a similar patch is available at the sphinx 4 ticket
# (https://trac.sagemath.org/ticket/31696), but sphinx 3.5 uses
# <code> tags while sphinx 4 uses <span> tags so we cannot just
# import the patch from trac.
./patches/sphinx-3.5-code-output.patch
# remove use of matplotlib function deprecated in 3.4
# https://trac.sagemath.org/ticket/31827
(fetchSageDiff {
@ -95,16 +93,38 @@ stdenv.mkDerivation rec {
sha256 = "sha256-SXcUGBMOoE9HpuBzgKC3P6cUmM5MiktXbe/7dVdrfWo=";
})
# https://trac.sagemath.org/ticket/30801. this patch has
# positive_review but has not been merged upstream yet, so we
# don't use fetchSageDiff because it returns a file that contains
# each commit as a separate patch instead of a single diff, and
# some commits from the pari update branch are already in 9.3.rc5
# (auto-resolvable merge conflicts).
(fetchpatch {
# pari 2.13 update
# https://trac.sagemath.org/ticket/30801
#
# the last commit in that ticket is
# c78b1470fccd915e2fa93f95f2fefba6220fb1f7, but commits after
# 10a4531721d2700fd717e2b3a1364508ffd971c3 only deal with 32-bit
# and post-26635 breakage, none of which is relevant to us. since
# there are post-9.4.beta0 rebases after that, we just skip later
# commits.
(fetchSageDiff {
base = "9.3";
name = "pari-2.13.1.patch";
url = "https://github.com/sagemath/sagetrac-mirror/compare/d6c5cd9be78cc448ee4c54bac93385b1244a234c...10a4531721d2700fd717e2b3a1364508ffd971c3.diff";
sha256 = "sha256-zMjRMEReoiTvmt+vvV0Ij1jtyLSLwSXBEVXqgvmq1D4=";
rev = "10a4531721d2700fd717e2b3a1364508ffd971c3";
sha256 = "sha256-gffWKK9CMREaNOb5zb63iZUgON4FvsPrMQNqe+5ZU9E=";
})
# sympy 1.8 update
# https://trac.sagemath.org/ticket/31647
(fetchSageDiff {
base = "9.4.beta0";
name = "sympy-1.8.patch";
rev = "fa864b36e15696450c36d54215b1e68183b29d25";
sha256 = "sha256-fj/9QEZlVF0fw9NpWflkTuBSKpGjCE6b96ECBgdn77o=";
})
# sphinx 4 update
# https://trac.sagemath.org/ticket/31696
(fetchSageDiff {
base = "9.4.beta3";
name = "sphinx-4.patch";
rev = "bc84af8c795b7da433d2000afc3626ee65ba28b8";
sha256 = "sha256-5Kvs9jarC8xRIU1rdmvIWxQLC25ehiTLJpg5skh8WNM=";
})
];