diff --git a/.github/PULL_REQUEST_TEMPLATE.md b/.github/PULL_REQUEST_TEMPLATE.md index bfc07096aa95..f7d16df87249 100644 --- a/.github/PULL_REQUEST_TEMPLATE.md +++ b/.github/PULL_REQUEST_TEMPLATE.md @@ -21,9 +21,13 @@ Reviewing guidelines: https://nixos.org/manual/nixpkgs/unstable/#chap-reviewing- - [ ] x86_64-darwin - [ ] aarch64-darwin - [ ] For non-Linux: Is `sandbox = true` set in `nix.conf`? (See [Nix manual](https://nixos.org/manual/nix/stable/#sec-conf-file)) -- [ ] Tested via one or more NixOS test(s) if existing and applicable for the change (look inside [nixos/tests](https://github.com/NixOS/nixpkgs/blob/master/nixos/tests)) -- [ ] Tested compilation of all packages that depend on this change using `nix-shell -p nixpkgs-review --run "nixpkgs-review wip"` -- [ ] Tested execution of all binary files (usually in `./result/bin/`) +- [ ] Tested, as applicable: + - [NixOS test(s)](https://nixos.org/manual/nixos/unstable/index.html#sec-nixos-tests) (look inside [nixos/tests](https://github.com/NixOS/nixpkgs/blob/master/nixos/tests)) + - and/or [package tests](https://nixos.org/manual/nixpkgs/unstable/#sec-package-tests) + - or, for functions and "core" functionality, tests in [lib/tests](https://github.com/NixOS/nixpkgs/blob/master/lib/tests) or [pkgs/test](https://github.com/NixOS/nixpkgs/blob/master/pkgs/test) + - made sure NixOS tests are [linked](https://nixos.org/manual/nixpkgs/unstable/#ssec-nixos-tests-linking) to the relevant packages +- [ ] Tested compilation of all packages that depend on this change using `nix-shell -p nixpkgs-review --run "nixpkgs-review rev HEAD"`. Note: all changes have to be committed, also see [nixpkgs-review usage](https://github.com/Mic92/nixpkgs-review#usage) +- [ ] Tested basic functionality of all binary files (usually in `./result/bin/`) - [21.11 Release Notes (or backporting 21.05 Release notes)](https://github.com/NixOS/nixpkgs/blob/master/CONTRIBUTING.md#generating-2111-release-notes) - [ ] (Package updates) Added a release notes entry if the change is major or breaking - [ ] (Module updates) Added a release notes entry if the change is significant diff --git a/.github/workflows/basic-eval.yml b/.github/workflows/basic-eval.yml index b7bbbd40b451..c5e17faea865 100644 --- a/.github/workflows/basic-eval.yml +++ b/.github/workflows/basic-eval.yml @@ -15,6 +15,6 @@ jobs: # we don't limit this action to only NixOS repo since the checks are cheap and useful developer feedback steps: - uses: actions/checkout@v2 - - uses: cachix/install-nix-action@v14 + - uses: cachix/install-nix-action@v15 # explicit list of supportedSystems is needed until aarch64-darwin becomes part of the trunk jobset - run: nix-build pkgs/top-level/release.nix -A tarball.nixpkgs-basic-release-checks --arg supportedSystems '[ "aarch64-darwin" "aarch64-linux" "x86_64-linux" "x86_64-darwin" ]' diff --git a/.github/workflows/editorconfig.yml b/.github/workflows/editorconfig.yml index 1934a24c65af..c0303ca80b9d 100644 --- a/.github/workflows/editorconfig.yml +++ b/.github/workflows/editorconfig.yml @@ -28,7 +28,7 @@ jobs: # pull_request_target checks out the base branch by default ref: refs/pull/${{ github.event.pull_request.number }}/merge if: env.PR_DIFF - - uses: cachix/install-nix-action@v14 + - uses: cachix/install-nix-action@v15 if: env.PR_DIFF with: # nixpkgs commit is pinned so that it doesn't break diff --git a/.github/workflows/manual-nixos.yml b/.github/workflows/manual-nixos.yml index 01bbe1b12bf2..e134f263c884 100644 --- a/.github/workflows/manual-nixos.yml +++ b/.github/workflows/manual-nixos.yml @@ -18,7 +18,7 @@ jobs: with: # pull_request_target checks out the base branch by default ref: refs/pull/${{ github.event.pull_request.number }}/merge - - uses: cachix/install-nix-action@v14 + - uses: cachix/install-nix-action@v15 with: # explicitly enable sandbox extra_nix_config: sandbox = true diff --git a/.github/workflows/manual-nixpkgs.yml b/.github/workflows/manual-nixpkgs.yml index d0c3f5959157..6866bc3af61a 100644 --- a/.github/workflows/manual-nixpkgs.yml +++ b/.github/workflows/manual-nixpkgs.yml @@ -18,7 +18,7 @@ jobs: with: # pull_request_target checks out the base branch by default ref: refs/pull/${{ github.event.pull_request.number }}/merge - - uses: cachix/install-nix-action@v14 + - uses: cachix/install-nix-action@v15 with: # explicitly enable sandbox extra_nix_config: sandbox = true diff --git a/.github/workflows/nixos-manual.yml b/.github/workflows/nixos-manual.yml index 70f61a1a3a88..eade07427d39 100644 --- a/.github/workflows/nixos-manual.yml +++ b/.github/workflows/nixos-manual.yml @@ -19,7 +19,7 @@ jobs: with: # pull_request_target checks out the base branch by default ref: refs/pull/${{ github.event.pull_request.number }}/merge - - uses: cachix/install-nix-action@v14 + - uses: cachix/install-nix-action@v15 - name: Check DocBook files generated from Markdown are consistent run: | nixos/doc/manual/md-to-db.sh diff --git a/README.md b/README.md index c8aef8515749..a09b7d92e3e5 100644 --- a/README.md +++ b/README.md @@ -53,7 +53,7 @@ system, [Hydra](https://hydra.nixos.org/). Artifacts successfully built with Hydra are published to cache at https://cache.nixos.org/. When successful build and test criteria are met, the Nixpkgs expressions are distributed via [Nix -channels](https://nixos.org/nix/manual/#sec-channels). +channels](https://nixos.org/manual/nix/stable/package-management/channels.html). # Contributing diff --git a/doc/builders/trivial-builders.chapter.md b/doc/builders/trivial-builders.chapter.md index 46620e1b459c..c3a3572cd9f4 100644 --- a/doc/builders/trivial-builders.chapter.md +++ b/doc/builders/trivial-builders.chapter.md @@ -47,6 +47,28 @@ These functions write `text` to the Nix store. This is useful for creating scrip Many more commands wrap `writeTextFile` including `writeText`, `writeTextDir`, `writeScript`, and `writeScriptBin`. These are convenience functions over `writeTextFile`. +## `writeShellApplication` {#trivial-builder-writeShellApplication} + +This can be used to easily produce a shell script that has some dependencies (`runtimeInputs`). It automatically sets the `PATH` of the script to contain all of the listed inputs, sets some sanity shellopts (`errexit`, `nounset`, `pipefail`), and checks the resulting script with [`shellcheck`](https://github.com/koalaman/shellcheck). + +For example, look at the following code: + +```nix +writeShellApplication { + name = "show-nixos-org"; + + runtimeInputs = [ curl w3m ]; + + text = '' + curl -s 'https://nixos.org' | w3m -dump -T text/html + ''; +} +``` + +Unlike with normal `writeShellScriptBin`, there is no need to manually write out `${curl}/bin/curl`, setting the PATH +was handled by `writeShellApplication`. Moreover, the script is being checked with `shellcheck` for more strict +validation. + ## `symlinkJoin` {#trivial-builder-symlinkJoin} This can be used to put many derivations into the same directory structure. It works by creating a new derivation and adding symlinks to each of the paths listed. It expects two arguments, `name`, and `paths`. `name` is the name used in the Nix store path for the created derivation. `paths` is a list of paths that will be symlinked. These paths can be to Nix store derivations or any other subdirectory contained within. diff --git a/doc/languages-frameworks/dhall.section.md b/doc/languages-frameworks/dhall.section.md index d1adcbf736bf..4b49908b0b0c 100644 --- a/doc/languages-frameworks/dhall.section.md +++ b/doc/languages-frameworks/dhall.section.md @@ -50,7 +50,7 @@ expression does not protect the Prelude import with a semantic integrity check, so the first step is to freeze the expression using `dhall freeze`, like this: -```bash +```ShellSession $ dhall freeze --inplace ./true.dhall ``` @@ -113,7 +113,7 @@ in … which we can then build using this command: -```bash +```ShellSession $ nix build --file ./example.nix dhallPackages.true ``` @@ -121,7 +121,7 @@ $ nix build --file ./example.nix dhallPackages.true The above package produces the following directory tree: -```bash +```ShellSession $ tree -a ./result result ├── .cache @@ -135,7 +135,7 @@ result * `source.dhall` contains the result of interpreting our Dhall package: - ```bash + ```ShellSession $ cat ./result/source.dhall True ``` @@ -143,7 +143,7 @@ result * The `.cache` subdirectory contains one binary cache product encoding the same result as `source.dhall`: - ```bash + ```ShellSession $ dhall decode < ./result/.cache/dhall/122027abdeddfe8503496adeb623466caa47da5f63abd2bc6fa19f6cfcb73ecfed70 True ``` @@ -151,7 +151,7 @@ result * `binary.dhall` contains a Dhall expression which handles fetching and decoding the same cache product: - ```bash + ```ShellSession $ cat ./result/binary.dhall missing sha256:27abdeddfe8503496adeb623466caa47da5f63abd2bc6fa19f6cfcb73ecfed70 $ cp -r ./result/.cache .cache @@ -168,7 +168,7 @@ to conserve disk space when they are used exclusively as dependencies. For example, if we build the Prelude package it will only contain the binary encoding of the expression: -```bash +```ShellSession $ nix build --file ./example.nix dhallPackages.Prelude $ tree -a result @@ -199,7 +199,7 @@ Dhall overlay like this: … and now the Prelude will contain the fully decoded result of interpreting the Prelude: -```bash +```ShellSession $ nix build --file ./example.nix dhallPackages.Prelude $ tree -a result @@ -302,7 +302,7 @@ Additionally, `buildDhallGitHubPackage` accepts the same arguments as You can use the `dhall-to-nixpkgs` command-line utility to automate packaging Dhall code. For example: -```bash +```ShellSession $ nix-env --install --attr haskellPackages.dhall-nixpkgs $ nix-env --install --attr nix-prefetch-git # Used by dhall-to-nixpkgs @@ -329,12 +329,12 @@ The utility takes care of automatically detecting remote imports and converting them to package dependencies. You can also use the utility on local Dhall directories, too: -```bash +```ShellSession $ dhall-to-nixpkgs directory ~/proj/dhall-semver { buildDhallDirectoryPackage, Prelude }: buildDhallDirectoryPackage { name = "proj"; - src = /Users/gabriel/proj/dhall-semver; + src = ~/proj/dhall-semver; file = "package.dhall"; source = false; document = false; @@ -342,6 +342,37 @@ $ dhall-to-nixpkgs directory ~/proj/dhall-semver } ``` +### Remote imports as fixed-output derivations {#ssec-dhall-remote-imports-as-fod} + +`dhall-to-nixpkgs` has the ability to fetch and build remote imports as +fixed-output derivations by using their Dhall integrity check. This is +sometimes easier than manually packaging all remote imports. + +This can be used like the following: + +```ShellSession +$ dhall-to-nixpkgs directory --fixed-output-derivations ~/proj/dhall-semver +{ buildDhallDirectoryPackage, buildDhallUrl }: + buildDhallDirectoryPackage { + name = "proj"; + src = ~/proj/dhall-semver; + file = "package.dhall"; + source = false; + document = false; + dependencies = [ + (buildDhallUrl { + url = "https://prelude.dhall-lang.org/v17.0.0/package.dhall"; + hash = "sha256-ENs8kZwl6QRoM9+Jeo/+JwHcOQ+giT2VjDQwUkvlpD4="; + dhallHash = "sha256:10db3c919c25e9046833df897a8ffe2701dc390fa0893d958c3430524be5a43e"; + }) + ]; + } +``` + +Here, `dhall-semver`'s `Prelude` dependency is fetched and built with the +`buildDhallUrl` helper function, instead of being passed in as a function +argument. + ## Overriding dependency versions {#ssec-dhall-overriding-dependency-versions} Suppose that we change our `true.dhall` example expression to depend on an older @@ -359,7 +390,7 @@ in Prelude.Bool.not False If we try to rebuild that expression the build will fail: -``` +```ShellSession $ nix build --file ./example.nix dhallPackages.true builder for '/nix/store/0f1hla7ff1wiaqyk1r2ky4wnhnw114fi-true.drv' failed with exit code 1; last 10 log lines: @@ -385,7 +416,7 @@ importing the URL. However, we can override the default Prelude version by using `dhall-to-nixpkgs` to create a Dhall package for our desired Prelude: -```bash +```ShellSession $ dhall-to-nixpkgs github https://github.com/dhall-lang/dhall-lang.git \ --name Prelude \ --directory Prelude \ @@ -396,7 +427,7 @@ $ dhall-to-nixpkgs github https://github.com/dhall-lang/dhall-lang.git \ … and then referencing that package in our Dhall overlay, by either overriding the Prelude globally for all packages, like this: -```bash +```nix dhallOverrides = self: super: { true = self.callPackage ./true.nix { }; @@ -407,7 +438,7 @@ the Prelude globally for all packages, like this: … or selectively overriding the Prelude dependency for just the `true` package, like this: -```bash +```nix dhallOverrides = self: super: { true = self.callPackage ./true.nix { Prelude = self.callPackage ./Prelude.nix { }; diff --git a/doc/languages-frameworks/rust.section.md b/doc/languages-frameworks/rust.section.md index 26eb9e26bd00..e7e804b99634 100644 --- a/doc/languages-frameworks/rust.section.md +++ b/doc/languages-frameworks/rust.section.md @@ -13,7 +13,7 @@ into your `configuration.nix` or bring them into scope with `nix-shell -p rustc For other versions such as daily builds (beta and nightly), use either `rustup` from nixpkgs (which will manage the rust installation in your home directory), -or use Mozilla's [Rust nightlies overlay](#using-the-rust-nightlies-overlay). +or use a community maintained [Rust overlay](#using-community-rust-overlays). ## Compiling Rust applications with Cargo {#compiling-rust-applications-with-cargo} @@ -411,7 +411,7 @@ you of the correct hash. `rustPlatform` provides the following hooks to automate Cargo builds: -* `cargoSetupHook`: configure Cargo to use depenencies vendored +* `cargoSetupHook`: configure Cargo to use dependencies vendored through `fetchCargoTarball`. This hook uses the `cargoDeps` environment variable to find the vendored dependencies. If a project already vendors its dependencies, the variable `cargoVendorDir` can @@ -426,7 +426,7 @@ you of the correct hash. * `maturinBuildHook`: use [Maturin](https://github.com/PyO3/maturin) to build a Python wheel. Similar to `cargoBuildHook`, the optional variable `buildAndTestSubdir` can be used to build a crate in a - Cargo workspace. Additional maturin flags can be passed through + Cargo workspace. Additional Maturin flags can be passed through `maturinBuildFlags`. * `cargoCheckHook`: run tests using Cargo. The build type for checks can be set using `cargoCheckType`. Additional flags can be passed to @@ -447,7 +447,7 @@ dependencies. The build itself is then performed by The following example outlines how the `tokenizers` Python package is built. Since the Python package is in the `source/bindings/python` -directory of the *tokenizers* project's source archive, we use +directory of the `tokenizers` project's source archive, we use `sourceRoot` to point the tooling to this directory: ```nix @@ -672,7 +672,7 @@ Some crates require external libraries. For crates from `defaultCrateOverrides` package in nixpkgs itself. Starting from that file, one can add more overrides, to add features -or build inputs by overriding the hello crate in a seperate file. +or build inputs by overriding the hello crate in a separate file. ```nix with import {}; @@ -729,7 +729,7 @@ with import {}; Actually, the overrides introduced in the previous section are more general. A number of other parameters can be overridden: -- The version of rustc used to compile the crate: +- The version of `rustc` used to compile the crate: ```nix (hello {}).override { rust = pkgs.rust; }; @@ -742,7 +742,7 @@ general. A number of other parameters can be overridden: (hello {}).override { release = false; }; ``` -- Whether to print the commands sent to rustc when building +- Whether to print the commands sent to `rustc` when building (equivalent to `--verbose` in cargo: ```nix @@ -871,11 +871,87 @@ rustc 1.26.0-nightly (188e693b3 2018-03-26) To see that you are using nightly. -## Using the Rust nightlies overlay {#using-the-rust-nightlies-overlay} +## Using community Rust overlays {#using-community-rust-overlays} -Mozilla provides an overlay for nixpkgs to bring a nightly version of Rust into scope. -This overlay can _also_ be used to install recent unstable or stable versions -of Rust, if desired. +There are two community maintained approaches to Rust toolchain management: +- [oxalica's Rust overlay](https://github.com/oxalica/rust-overlay) +- [fenix](https://github.com/nix-community/fenix) + +Oxalica's overlay allows you to select a particular Rust version and components. +See [their documentation](https://github.com/oxalica/rust-overlay#rust-overlay) for more +detailed usage. + +Fenix is an alternative to `rustup` and can also be used as an overlay. + +Both oxalica's overlay and fenix better integrate with nix and cache optimizations. +Because of this and ergonomics, either of those community projects +should be preferred to the Mozilla's Rust overlay (`nixpkgs-mozilla`). + +### How to select a specific `rustc` and toolchain version {#how-to-select-a-specific-rustc-and-toolchain-version} + +You can consume the oxalica overlay and use it to grab a specific Rust toolchain version. +Here is an example `shell.nix` showing how to grab the current stable toolchain: +```nix +{ pkgs ? import { + overlays = [ + (import (fetchTarball "https://github.com/oxalica/rust-overlay/archive/master.tar.gz")) + ]; + } +}: +pkgs.mkShell { + nativeBuildInputs = with pkgs; [ + pkg-config + rust-bin.stable.latest.minimal + ]; +} +``` + +You can try this out by: +1. Saving that to `shell.nix` +2. Executing `nix-shell --pure --command 'rustc --version'` + +As of writing, this prints out `rustc 1.56.0 (09c42c458 2021-10-18)`. + +### How to use an overlay toolchain in a derivation {#how-to-use-an-overlay-toolchain-in-a-derivation} + +You can also use an overlay's Rust toolchain with `buildRustPackage`. +The below snippet demonstrates invoking `buildRustPackage` with an oxalica overlay selected Rust toolchain: +```nix +with import { + overlays = [ + (import (fetchTarball "https://github.com/oxalica/rust-overlay/archive/master.tar.gz")) + ]; +}; + +rustPlatform.buildRustPackage rec { + pname = "ripgrep"; + version = "12.1.1"; + nativeBuildInputs = [ + rust-bin.stable.latest.minimal + ]; + + src = fetchFromGitHub { + owner = "BurntSushi"; + repo = "ripgrep"; + rev = version; + sha256 = "1hqps7l5qrjh9f914r5i6kmcz6f1yb951nv4lby0cjnp5l253kps"; + }; + + cargoSha256 = "03wf9r2csi6jpa7v5sw5lpxkrk4wfzwmzx7k3991q3bdjzcwnnwp"; + + meta = with lib; { + description = "A fast line-oriented regex search tool, similar to ag and ack"; + homepage = "https://github.com/BurntSushi/ripgrep"; + license = licenses.unlicense; + maintainers = [ maintainers.tailhook ]; + }; +} +``` + +Follow the below steps to try that snippet. +1. create a new directory +1. save the above snippet as `default.nix` in that directory +1. cd into that directory and run `nix-build` ### Rust overlay installation {#rust-overlay-installation} @@ -883,27 +959,15 @@ You can use this overlay by either changing your local nixpkgs configuration, or by adding the overlay declaratively in a nix expression, e.g. in `configuration.nix`. For more information see [the manual on installing overlays](#sec-overlays-install). -#### Imperative rust overlay installation {#imperative-rust-overlay-installation} - -Clone [nixpkgs-mozilla](https://github.com/mozilla/nixpkgs-mozilla), -and create a symbolic link to the file -[rust-overlay.nix](https://github.com/mozilla/nixpkgs-mozilla/blob/master/rust-overlay.nix) -in the `~/.config/nixpkgs/overlays` directory. - -```ShellSession -$ git clone https://github.com/mozilla/nixpkgs-mozilla.git -$ mkdir -p ~/.config/nixpkgs/overlays -$ ln -s $(pwd)/nixpkgs-mozilla/rust-overlay.nix ~/.config/nixpkgs/overlays/rust-overlay.nix -``` - -### Declarative rust overlay installation {#declarative-rust-overlay-installation} +### Declarative Rust overlay installation {#declarative-rust-overlay-installation} +This snippet shows how to use oxalica's Rust overlay. Add the following to your `configuration.nix`, `home-configuration.nix`, `shell.nix`, or similar: ```nix { pkgs ? import { overlays = [ - (import (builtins.fetchTarball https://github.com/mozilla/nixpkgs-mozilla/archive/master.tar.gz)) + (import (builtins.fetchTarball "https://github.com/oxalica/rust-overlay/archive/master.tar.gz")) # Further overlays go here ]; }; @@ -911,36 +975,3 @@ Add the following to your `configuration.nix`, `home-configuration.nix`, `shell. ``` Note that this will fetch the latest overlay version when rebuilding your system. - -### Rust overlay usage {#rust-overlay-usage} - -The overlay contains attribute sets corresponding to different versions of the rust toolchain, such as: - -* `latest.rustChannels.stable` -* `latest.rustChannels.nightly` -* a function `rustChannelOf`, called as `(rustChannelOf { date = "2018-04-11"; channel = "nightly"; })`, or... -* `(nixpkgs.rustChannelOf { rustToolchain = ./rust-toolchain; })` if you have a local `rust-toolchain` file (see https://github.com/mozilla/nixpkgs-mozilla#using-in-nix-expressions for an example) - -Each of these contain packages such as `rust`, which contains your usual rust development tools with the respective toolchain chosen. -For example, you might want to add `latest.rustChannels.stable.rust` to the list of packages in your configuration. - -Imperatively, the latest stable version can be installed with the following command: - -```ShellSession -$ nix-env -Ai nixpkgs.latest.rustChannels.stable.rust -``` - -Or using the attribute with nix-shell: - -```ShellSession -$ nix-shell -p nixpkgs.latest.rustChannels.stable.rust -``` - -Substitute the `nixpkgs` prefix with `nixos` on NixOS. -To install the beta or nightly channel, "stable" should be substituted by -"nightly" or "beta", or -use the function provided by this overlay to pull a version based on a -build date. - -The overlay automatically updates itself as it uses the same source as -[rustup](https://www.rustup.rs/). diff --git a/doc/using/overlays.chapter.md b/doc/using/overlays.chapter.md index d2e3b49a6aa9..df152bc14e7b 100644 --- a/doc/using/overlays.chapter.md +++ b/doc/using/overlays.chapter.md @@ -112,7 +112,7 @@ self: super: This overlay uses Intel's MKL library for both BLAS and LAPACK interfaces. Note that the same can be accomplished at runtime using `LD_LIBRARY_PATH` of `libblas.so.3` and `liblapack.so.3`. For instance: ```ShellSession -$ LD_LIBRARY_PATH=$(nix-build -A mkl)/lib:$LD_LIBRARY_PATH nix-shell -p octave --run octave +$ LD_LIBRARY_PATH=$(nix-build -A mkl)/lib${LD_LIBRARY_PATH:+:}$LD_LIBRARY_PATH nix-shell -p octave --run octave ``` Intel MKL requires an `openmp` implementation when running with multiple processors. By default, `mkl` will use Intel's `iomp` implementation if no other is specified, but this is a runtime-only dependency and binary compatible with the LLVM implementation. To use that one instead, Intel recommends users set it with `LD_PRELOAD`. Note that `mkl` is only available on `x86_64-linux` and `x86_64-darwin`. Moreover, Hydra is not building and distributing pre-compiled binaries using it. diff --git a/lib/systems/examples.nix b/lib/systems/examples.nix index 8dfa22ac787e..f2469f9bf7ff 100644 --- a/lib/systems/examples.nix +++ b/lib/systems/examples.nix @@ -258,6 +258,12 @@ rec { platform = {}; }; + x86_64-darwin = { + config = "x86_64-apple-darwin"; + xcodePlatform = "MacOSX"; + platform = {}; + }; + # # Windows # diff --git a/lib/tests/modules.sh b/lib/tests/modules.sh index 49fc8bcbafc4..aba3f08122f5 100755 --- a/lib/tests/modules.sh +++ b/lib/tests/modules.sh @@ -62,17 +62,17 @@ checkConfigError() { # Check boolean option. checkConfigOutput "false" config.enable ./declare-enable.nix -checkConfigError 'The option .* does not exist. Definition values:\n- In .*: true' config.enable ./define-enable.nix +checkConfigError 'The option .* does not exist. Definition values:\n\s*- In .*: true' config.enable ./define-enable.nix # Check integer types. # unsigned checkConfigOutput "42" config.value ./declare-int-unsigned-value.nix ./define-value-int-positive.nix -checkConfigError 'A definition for option .* is not of type.*unsigned integer.*. Definition values:\n- In .*: -23' config.value ./declare-int-unsigned-value.nix ./define-value-int-negative.nix +checkConfigError 'A definition for option .* is not of type.*unsigned integer.*. Definition values:\n\s*- In .*: -23' config.value ./declare-int-unsigned-value.nix ./define-value-int-negative.nix # positive -checkConfigError 'A definition for option .* is not of type.*positive integer.*. Definition values:\n- In .*: 0' config.value ./declare-int-positive-value.nix ./define-value-int-zero.nix +checkConfigError 'A definition for option .* is not of type.*positive integer.*. Definition values:\n\s*- In .*: 0' config.value ./declare-int-positive-value.nix ./define-value-int-zero.nix # between checkConfigOutput "42" config.value ./declare-int-between-value.nix ./define-value-int-positive.nix -checkConfigError 'A definition for option .* is not of type.*between.*-21 and 43.*inclusive.*. Definition values:\n- In .*: -23' config.value ./declare-int-between-value.nix ./define-value-int-negative.nix +checkConfigError 'A definition for option .* is not of type.*between.*-21 and 43.*inclusive.*. Definition values:\n\s*- In .*: -23' config.value ./declare-int-between-value.nix ./define-value-int-negative.nix # Check either types # types.either @@ -125,7 +125,7 @@ checkConfigOutput 'true' "$@" ./define-enable.nix ./define-attrsOfSub-foo-enable set -- config.enable ./define-enable.nix ./declare-enable.nix checkConfigOutput "true" "$@" checkConfigOutput "false" "$@" ./disable-define-enable.nix -checkConfigError "The option .*enable.* does not exist. Definition values:\n- In .*: true" "$@" ./disable-declare-enable.nix +checkConfigError "The option .*enable.* does not exist. Definition values:\n\s*- In .*: true" "$@" ./disable-declare-enable.nix checkConfigError "attribute .*enable.* in selection path .*config.enable.* not found" "$@" ./disable-define-enable.nix ./disable-declare-enable.nix checkConfigError "attribute .*enable.* in selection path .*config.enable.* not found" "$@" ./disable-enable-modules.nix @@ -142,18 +142,18 @@ checkConfigError 'infinite recursion encountered' "$@" # Check _module.check. set -- config.enable ./declare-enable.nix ./define-enable.nix ./define-attrsOfSub-foo.nix -checkConfigError 'The option .* does not exist. Definition values:\n- In .*' "$@" +checkConfigError 'The option .* does not exist. Definition values:\n\s*- In .*' "$@" checkConfigOutput "true" "$@" ./define-module-check.nix # Check coerced value. checkConfigOutput "\"42\"" config.value ./declare-coerced-value.nix checkConfigOutput "\"24\"" config.value ./declare-coerced-value.nix ./define-value-string.nix -checkConfigError 'A definition for option .* is not.*string or signed integer convertible to it.*. Definition values:\n- In .*: \[ \]' config.value ./declare-coerced-value.nix ./define-value-list.nix +checkConfigError 'A definition for option .* is not.*string or signed integer convertible to it.*. Definition values:\n\s*- In .*: \[ \]' config.value ./declare-coerced-value.nix ./define-value-list.nix # Check coerced value with unsound coercion checkConfigOutput "12" config.value ./declare-coerced-value-unsound.nix -checkConfigError 'A definition for option .* is not of type .*. Definition values:\n- In .*: "1000"' config.value ./declare-coerced-value-unsound.nix ./define-value-string-bigint.nix -checkConfigError 'unrecognised JSON value' config.value ./declare-coerced-value-unsound.nix ./define-value-string-arbitrary.nix +checkConfigError 'A definition for option .* is not of type .*. Definition values:\n\s*- In .*: "1000"' config.value ./declare-coerced-value-unsound.nix ./define-value-string-bigint.nix +checkConfigError 'json.exception.parse_error' config.value ./declare-coerced-value-unsound.nix ./define-value-string-arbitrary.nix # Check mkAliasOptionModule. checkConfigOutput "true" config.enable ./alias-with-priority.nix @@ -169,7 +169,7 @@ checkConfigOutput "foo" config.submodule.foo ./declare-submoduleWith-special.nix ## shorthandOnlyDefines config behaves as expected checkConfigOutput "true" config.submodule.config ./declare-submoduleWith-shorthand.nix ./define-submoduleWith-shorthand.nix checkConfigError 'is not of type `boolean' config.submodule.config ./declare-submoduleWith-shorthand.nix ./define-submoduleWith-noshorthand.nix -checkConfigError "You're trying to declare a value of type \`bool'\nrather than an attribute-set for the option" config.submodule.config ./declare-submoduleWith-noshorthand.nix ./define-submoduleWith-shorthand.nix +checkConfigError "You're trying to declare a value of type \`bool'\n\s*rather than an attribute-set for the option" config.submodule.config ./declare-submoduleWith-noshorthand.nix ./define-submoduleWith-shorthand.nix checkConfigOutput "true" config.submodule.config ./declare-submoduleWith-noshorthand.nix ./define-submoduleWith-noshorthand.nix ## submoduleWith should merge all modules in one swoop @@ -193,7 +193,7 @@ checkConfigOutput "true" config.submodule.enable ./declare-submoduleWith-path.ni checkConfigOutput "true" config.enable ./disable-recursive/main.nix checkConfigOutput "true" config.enable ./disable-recursive/{main.nix,disable-foo.nix} checkConfigOutput "true" config.enable ./disable-recursive/{main.nix,disable-bar.nix} -checkConfigError 'The option .* does not exist. Definition values:\n- In .*: true' config.enable ./disable-recursive/{main.nix,disable-foo.nix,disable-bar.nix} +checkConfigError 'The option .* does not exist. Definition values:\n\s*- In .*: true' config.enable ./disable-recursive/{main.nix,disable-foo.nix,disable-bar.nix} # Check that imports can depend on derivations checkConfigOutput "true" config.enable ./import-from-store.nix @@ -277,7 +277,7 @@ checkConfigOutput baz config.value.nested.bar.baz ./types-anything/mk-mods.nix ## types.functionTo checkConfigOutput "input is input" config.result ./functionTo/trivial.nix checkConfigOutput "a b" config.result ./functionTo/merging-list.nix -checkConfigError 'A definition for option .fun.\[function body\]. is not of type .string.. Definition values:\n- In .*wrong-type.nix' config.result ./functionTo/wrong-type.nix +checkConfigError 'A definition for option .fun.\[function body\]. is not of type .string.. Definition values:\n\s*- In .*wrong-type.nix' config.result ./functionTo/wrong-type.nix checkConfigOutput "b a" config.result ./functionTo/list-order.nix checkConfigOutput "a c" config.result ./functionTo/merging-attrs.nix diff --git a/lib/tests/release.nix b/lib/tests/release.nix index 77e0e1af7555..815841e0a8f3 100644 --- a/lib/tests/release.nix +++ b/lib/tests/release.nix @@ -23,6 +23,10 @@ pkgs.runCommand "nixpkgs-lib-tests" { export NIX_STORE_DIR=$TEST_ROOT/store export PAGER=cat cacheDir=$TEST_ROOT/binary-cache + + mkdir -p $NIX_CONF_DIR + echo "experimental-features = nix-command" >> $NIX_CONF_DIR/nix.conf + nix-store --init cp -r ${../.} lib diff --git a/lib/tests/sources.sh b/lib/tests/sources.sh index 71fee719cb21..1f63cac5005a 100755 --- a/lib/tests/sources.sh +++ b/lib/tests/sources.sh @@ -26,7 +26,7 @@ touch {README.md,module.o,foo.bar} # nix-instantiate doesn't write out the source, only computing the hash, so # this uses the experimental nix command instead. -dir="$(nix eval --raw '(with import ; "${ +dir="$(nix eval --impure --raw --expr '(with import ; "${ cleanSource ./. }")')" (cd $dir; find) | sort -f | diff -U10 - <(cat < List[Plugin]: with CleanEnvironment(): - cmd = ["nix", "eval", "--json", editor.get_plugins] + cmd = ["nix", "eval", "--impure", "--json", "--expr", editor.get_plugins] log.debug("Running command %s", cmd) out = subprocess.check_output(cmd) data = json.loads(out) diff --git a/nixos/doc/manual/administration/cleaning-store.chapter.md b/nixos/doc/manual/administration/cleaning-store.chapter.md index fb2090b31d84..c9140d0869c7 100644 --- a/nixos/doc/manual/administration/cleaning-store.chapter.md +++ b/nixos/doc/manual/administration/cleaning-store.chapter.md @@ -58,5 +58,5 @@ a while to finish. ## NixOS Boot Entries {#sect-nixos-gc-boot-entries} If your `/boot` partition runs out of space, after clearing old profiles -you must rebuild your system with `nixos-rebuild` to update the `/boot` -partition and clear space. +you must rebuild your system with `nixos-rebuild boot` or `nixos-rebuild +switch` to update the `/boot` partition and clear space. diff --git a/nixos/doc/manual/development/writing-nixos-tests.section.md b/nixos/doc/manual/development/writing-nixos-tests.section.md index bf80099f1a27..d9749d37da79 100644 --- a/nixos/doc/manual/development/writing-nixos-tests.section.md +++ b/nixos/doc/manual/development/writing-nixos-tests.section.md @@ -159,6 +159,12 @@ The following methods are available on machine objects: `execute` : Execute a shell command, returning a list `(status, stdout)`. + If the command detaches, it must close stdout, as `execute` will wait + for this to consume all output reliably. This can be achieved by + redirecting stdout to stderr `>&2`, to `/dev/console`, `/dev/null` or + a file. Examples of detaching commands are `sleep 365d &`, where the + shell forks a new process that can write to stdout and `xclip -i`, where + the `xclip` command itself forks without closing stdout. Takes an optional parameter `check_return` that defaults to `True`. Setting this parameter to `False` will not check for the return code and return -1 instead. This can be used for commands that shut down @@ -179,6 +185,9 @@ The following methods are available on machine objects: - Dereferencing unset variables fail the command. + - It will wait for stdout to be closed. See `execute` for the + implications. + `fail` : Like `succeed`, but raising an exception if the command returns a zero diff --git a/nixos/doc/manual/from_md/administration/cleaning-store.chapter.xml b/nixos/doc/manual/from_md/administration/cleaning-store.chapter.xml index 0ca98dd6e510..4243d2bf53f9 100644 --- a/nixos/doc/manual/from_md/administration/cleaning-store.chapter.xml +++ b/nixos/doc/manual/from_md/administration/cleaning-store.chapter.xml @@ -64,7 +64,8 @@ $ nix-store --optimise If your /boot partition runs out of space, after clearing old profiles you must rebuild your system with - nixos-rebuild to update the + nixos-rebuild boot or + nixos-rebuild switch to update the /boot partition and clear space. diff --git a/nixos/doc/manual/from_md/development/writing-nixos-tests.section.xml b/nixos/doc/manual/from_md/development/writing-nixos-tests.section.xml index a3b63422433e..0d523681b639 100644 --- a/nixos/doc/manual/from_md/development/writing-nixos-tests.section.xml +++ b/nixos/doc/manual/from_md/development/writing-nixos-tests.section.xml @@ -266,8 +266,18 @@ start_all() Execute a shell command, returning a list - (status, stdout). Takes an optional - parameter check_return that defaults to + (status, stdout). If the command detaches, + it must close stdout, as execute will wait + for this to consume all output reliably. This can be achieved + by redirecting stdout to stderr >&2, + to /dev/console, + /dev/null or a file. Examples of detaching + commands are sleep 365d &, where the + shell forks a new process that can write to stdout and + xclip -i, where the + xclip command itself forks without closing + stdout. Takes an optional parameter + check_return that defaults to True. Setting this parameter to False will not check for the return code and return -1 instead. This can be used for commands that shut @@ -306,6 +316,12 @@ start_all() Dereferencing unset variables fail the command. + + + It will wait for stdout to be closed. See + execute for the implications. + + diff --git a/nixos/doc/manual/from_md/release-notes/rl-2111.section.xml b/nixos/doc/manual/from_md/release-notes/rl-2111.section.xml index 9f2578bb1810..b5a3e27ab91e 100644 --- a/nixos/doc/manual/from_md/release-notes/rl-2111.section.xml +++ b/nixos/doc/manual/from_md/release-notes/rl-2111.section.xml @@ -15,6 +15,15 @@
Highlights + + + Nix has been updated to version 2.4, reference its + release + notes for more information on what has changed. The + previous version of Nix, 2.3.16, remains available for the + time being in the nix_2_3 package. + + iptables now uses @@ -50,6 +59,29 @@ guide is available. + + + Improvements have been made to the Hadoop module and package: + + + + + HDFS and YARN now support production-ready highly + available deployments with automatic failover. + + + + + Hadoop now defaults to Hadoop 3, updated from 2. + + + + + JournalNode, ZKFS and HTTPFS services have been added. + + + + Activation scripts can now opt int to be run when running @@ -100,6 +132,46 @@ Notes for details. + + + LXD support was greatly improved: + + + + + building LXD images from configurations is now directly + possible with just nixpkgs + + + + + hydra is now building nixOS LXD images that can be used + standalone with full nixos-rebuild support + + + + + + + OpenSSH was updated to version 8.8p1 + + + + + This breaks connections to old SSH daemons as ssh-rsa host + keys and ssh-rsa public keys that were signed with SHA-1 + are disabled by default now + + + + + These can be re-enabled, see the + OpenSSH + changelog for details + + + +
@@ -394,11 +466,52 @@ hardware.rasdaemon. + + + code-server-module now available + + + + + xmrig, + a high performance, open source, cross platform RandomX, + KawPow, CryptoNight and AstroBWT unified CPU/GPU miner and + RandomX benchmark. + + + + + Auto nice daemons + ananicy + and + ananicy-cpp. + Available as + services.ananicy. + +
Backward Incompatibilities + + + The NixOS VM test framework, + pkgs.nixosTest/make-test-python.nix, + now requires detaching commands such as + succeed("foo &") and + succeed("foo | xclip -i") to + close stdout. This can be done with a redirect such as + succeed("foo >&2 &"). + This breaking change was necessitated by a race condition + causing tests to fail or hang. It applies to all methods that + invoke commands on the nodes, including + execute, succeed, + fail, + wait_until_succeeds, + wait_until_fails. + + The services.wakeonlan option was removed, @@ -511,7 +624,7 @@ Superuser created successfully. The staticjinja package has been upgraded - from 1.0.4 to 4.1.0 + from 1.0.4 to 4.1.1 @@ -1722,6 +1835,25 @@ Superuser created successfully. better user experience and benefit from this change. + + + A new option + services.prometheus.enableReload has been + added which can be enabled to reload the prometheus service + when its config file changes instead of restarting. + + + + + The option + services.prometheus.environmentFile has + been removed since it was causing + issues + and Prometheus now has native support for secret files, i.e. + basic_auth.password_file and + authorization.credentials_file. + + Dokuwiki now supports caddy! However @@ -1745,6 +1877,65 @@ Superuser created successfully. + + + The + services.unifi + module has been reworked, solving a number of issues. This + leads to several user facing changes: + + + + + The services.unifi.dataDir option is + removed and the data is now always located under + /var/lib/unifi/data. This is done to + make better use of systemd state direcotiry and thus + making the service restart more reliable. + + + + + The unifi logs can now be found under: + /var/log/unifi instead of + /var/lib/unifi/logs. + + + + + The unifi run directory can now be found under: + /run/unifi instead of + /var/lib/unifi/run. + + + + + + + security.pam.services.<name>.makeHomeDir + now uses umask=0077 instead of + umask=0022 when creating the home + directory. + + + + + Loki has had another release. Some default values have been + changed for the configuration and some configuration options + have been renamed. For more details, please check + the + upgrade guide. + + + + + julia now refers to + julia-stable instead of + julia-lts. In practice this means it has + been upgraded from 1.0.4 to + 1.5.4. + +
diff --git a/nixos/doc/manual/release-notes/rl-2111.section.md b/nixos/doc/manual/release-notes/rl-2111.section.md index 2067ac5b305c..d4ff576fecf0 100644 --- a/nixos/doc/manual/release-notes/rl-2111.section.md +++ b/nixos/doc/manual/release-notes/rl-2111.section.md @@ -6,6 +6,8 @@ In addition to numerous new and upgraded packages, this release has the followin ## Highlights {#sec-release-21.11-highlights} +- Nix has been updated to version 2.4, reference its [release notes](https://discourse.nixos.org/t/nix-2-4-released/15822) for more information on what has changed. The previous version of Nix, 2.3.16, remains available for the time being in the `nix_2_3` package. + - `iptables` now uses `nf_tables` backend. - PHP now defaults to PHP 8.0, updated from 7.4. @@ -18,6 +20,11 @@ In addition to numerous new and upgraded packages, this release has the followin - spark now defaults to spark 3, updated from 2. A [migration guide](https://spark.apache.org/docs/latest/core-migration-guide.html#upgrading-from-core-24-to-30) is available. +- Improvements have been made to the Hadoop module and package: + - HDFS and YARN now support production-ready highly available deployments with automatic failover. + - Hadoop now defaults to Hadoop 3, updated from 2. + - JournalNode, ZKFS and HTTPFS services have been added. + - Activation scripts can now opt int to be run when running `nixos-rebuild dry-activate` and detect the dry activation by reading `$NIXOS_ACTION`. This allows activation scripts to output what they would change if the activation was really run. The users/modules activation script supports this and outputs some of is actions. @@ -35,6 +42,14 @@ In addition to numerous new and upgraded packages, this release has the followin - GNOME has been upgraded to 41. Please take a look at their [Release Notes](https://help.gnome.org/misc/release-notes/41.0/) for details. +- LXD support was greatly improved: + - building LXD images from configurations is now directly possible with just nixpkgs + - hydra is now building nixOS LXD images that can be used standalone with full nixos-rebuild support + +- OpenSSH was updated to version 8.8p1 + - This breaks connections to old SSH daemons as ssh-rsa host keys and ssh-rsa public keys that were signed with SHA-1 are disabled by default now + - These can be re-enabled, see the [OpenSSH changelog](https://www.openssh.com/txt/release-8.8) for details + ## New Services {#sec-release-21.11-new-services} - [btrbk](https://digint.ch/btrbk/index.html), a backup tool for btrfs subvolumes, taking advantage of btrfs specific capabilities to create atomic snapshots and transfer them incrementally to your backup locations. Available as [services.btrbk](options.html#opt-services.brtbk.instances). @@ -120,8 +135,18 @@ In addition to numerous new and upgraded packages, this release has the followin - [rasdaemon](https://github.com/mchehab/rasdaemon), a hardware error logging daemon. Available as [hardware.rasdaemon](#opt-hardware.rasdaemon.enable). +- `code-server`-module now available + +- [xmrig](https://github.com/xmrig/xmrig), a high performance, open source, cross platform RandomX, KawPow, CryptoNight and AstroBWT unified CPU/GPU miner and RandomX benchmark. + +- Auto nice daemons [ananicy](https://github.com/Nefelim4ag/Ananicy) and [ananicy-cpp](https://gitlab.com/ananicy-cpp/ananicy-cpp/). Available as [services.ananicy](#opt-services.ananicy.enable). + ## Backward Incompatibilities {#sec-release-21.11-incompatibilities} +- The NixOS VM test framework, `pkgs.nixosTest`/`make-test-python.nix`, now requires detaching commands such as `succeed("foo &")` and `succeed("foo | xclip -i")` to close stdout. + This can be done with a redirect such as `succeed("foo >&2 &")`. This breaking change was necessitated by a race condition causing tests to fail or hang. + It applies to all methods that invoke commands on the nodes, including `execute`, `succeed`, `fail`, `wait_until_succeeds`, `wait_until_fails`. + - The `services.wakeonlan` option was removed, and replaced with `networking.interfaces..wakeOnLan`. - The `security.wrappers` option now requires to always specify an owner, group and whether the setuid/setgid bit should be set. @@ -179,7 +204,7 @@ In addition to numerous new and upgraded packages, this release has the followin Superuser created successfully. ``` -- The `staticjinja` package has been upgraded from 1.0.4 to 4.1.0 +- The `staticjinja` package has been upgraded from 1.0.4 to 4.1.1 - Firefox v91 does not support addons with invalid signature anymore. Firefox ESR needs to be used for nix addon support. @@ -489,6 +514,21 @@ In addition to numerous new and upgraded packages, this release has the followin - The `cawbird` Twitter client now uses its own API keys to count as different application than upstream builds. This is done to evade application-level rate limiting. While existing accounts continue to work, users may want to remove and re-register their account in the client to enjoy a better user experience and benefit from this change. +- A new option `services.prometheus.enableReload` has been added which can be enabled to reload the prometheus service when its config file changes instead of restarting. + +- The option `services.prometheus.environmentFile` has been removed since it was causing [issues](https://github.com/NixOS/nixpkgs/issues/126083) and Prometheus now has native support for secret files, i.e. `basic_auth.password_file` and `authorization.credentials_file`. + - Dokuwiki now supports caddy! However - the nginx option has been removed, in the new configuration, please use the `dokuwiki.webserver = "nginx"` instead. - The "${hostname}" option has been deprecated, please use `dokuwiki.sites = [ "${hostname}" ]` instead + +- The [services.unifi](options.html#opt-services.unifi.enable) module has been reworked, solving a number of issues. This leads to several user facing changes: + - The `services.unifi.dataDir` option is removed and the data is now always located under `/var/lib/unifi/data`. This is done to make better use of systemd state direcotiry and thus making the service restart more reliable. + - The unifi logs can now be found under: `/var/log/unifi` instead of `/var/lib/unifi/logs`. + - The unifi run directory can now be found under: `/run/unifi` instead of `/var/lib/unifi/run`. + +- `security.pam.services..makeHomeDir` now uses `umask=0077` instead of `umask=0022` when creating the home directory. + +- Loki has had another release. Some default values have been changed for the configuration and some configuration options have been renamed. For more details, please check [the upgrade guide](https://grafana.com/docs/loki/latest/upgrading/#240). + +- `julia` now refers to `julia-stable` instead of `julia-lts`. In practice this means it has been upgraded from `1.0.4` to `1.5.4`. diff --git a/nixos/maintainers/scripts/ec2/amazon-image.nix b/nixos/maintainers/scripts/ec2/amazon-image.nix index fcb369e87ff9..6358ec68f7cf 100644 --- a/nixos/maintainers/scripts/ec2/amazon-image.nix +++ b/nixos/maintainers/scripts/ec2/amazon-image.nix @@ -4,6 +4,7 @@ with lib; let cfg = config.amazonImage; + amiBootMode = if config.ec2.efi then "uefi" else "legacy-bios"; in { @@ -106,10 +107,12 @@ in { --arg system ${lib.escapeShellArg pkgs.stdenv.hostPlatform.system} \ --arg root_logical_bytes "$(${pkgs.qemu}/bin/qemu-img info --output json "$rootDisk" | ${pkgs.jq}/bin/jq '."virtual-size"')" \ --arg boot_logical_bytes "$(${pkgs.qemu}/bin/qemu-img info --output json "$bootDisk" | ${pkgs.jq}/bin/jq '."virtual-size"')" \ + --arg boot_mode "${amiBootMode}" \ --arg root "$rootDisk" \ --arg boot "$bootDisk" \ '{} | .label = $system_label + | .boot_mode = $boot_mode | .system = $system | .disks.boot.logical_bytes = $boot_logical_bytes | .disks.boot.file = $boot @@ -145,9 +148,11 @@ in { --arg system_label ${lib.escapeShellArg config.system.nixos.label} \ --arg system ${lib.escapeShellArg pkgs.stdenv.hostPlatform.system} \ --arg logical_bytes "$(${pkgs.qemu}/bin/qemu-img info --output json "$diskImage" | ${pkgs.jq}/bin/jq '."virtual-size"')" \ + --arg boot_mode "${amiBootMode}" \ --arg file "$diskImage" \ '{} | .label = $system_label + | .boot_mode = $boot_mode | .system = $system | .logical_bytes = $logical_bytes | .file = $file diff --git a/nixos/maintainers/scripts/ec2/create-amis.sh b/nixos/maintainers/scripts/ec2/create-amis.sh index 712d9b548ff0..797fe03e2095 100755 --- a/nixos/maintainers/scripts/ec2/create-amis.sh +++ b/nixos/maintainers/scripts/ec2/create-amis.sh @@ -1,6 +1,9 @@ #!/usr/bin/env nix-shell #!nix-shell -p awscli -p jq -p qemu -i bash # shellcheck shell=bash +# +# Future Deprecation? +# This entire thing should probably be replaced with a generic terraform config # Uploads and registers NixOS images built from the # amazonImage attribute. Images are uploaded and @@ -65,13 +68,18 @@ read_image_info() { # We handle a single image per invocation, store all attributes in # globals for convenience. zfs_disks=$(read_image_info .disks) -image_label="$(read_image_info .label)${zfs_disks:+-ZFS}" +is_zfs_image= +if jq -e .boot <<< "$zfs_disks"; then + is_zfs_image=1 + zfs_boot=".disks.boot" +fi +image_label="$(read_image_info .label)${is_zfs_image:+-ZFS}" image_system=$(read_image_info .system) -image_files=( $(read_image_info "${zfs_disks:+.disks.root}.file") ) +image_files=( $(read_image_info ".disks.root.file") ) -image_logical_bytes=$(read_image_info "${zfs_disks:+.disks.boot}.logical_bytes") +image_logical_bytes=$(read_image_info "${zfs_boot:-.disks.root}.logical_bytes") -if [[ -n "$zfs_disks" ]]; then +if [[ -n "$is_zfs_image" ]]; then image_files+=( $(read_image_info .disks.boot.file) ) fi @@ -192,7 +200,7 @@ upload_image() { for image_file in "${image_files[@]}"; do local aws_path=${image_file#/} - if [[ -n "$zfs_disks" ]]; then + if [[ -n "$is_zfs_image" ]]; then local suffix=${image_file%.*} suffix=${suffix##*.} fi @@ -239,7 +247,7 @@ upload_image() { "DeviceName=/dev/xvda,Ebs={SnapshotId=$snapshot_id,VolumeSize=$image_logical_gigabytes,DeleteOnTermination=true,VolumeType=gp3}" ) - if [[ -n "$zfs_disks" ]]; then + if [[ -n "$is_zfs_image" ]]; then local root_snapshot_id=$(read_state "$region.$image_label.root.$image_system" snapshot_id) local root_image_logical_bytes=$(read_image_info ".disks.root.logical_bytes") @@ -270,6 +278,7 @@ upload_image() { --region "$region" \ --architecture $amazon_arch \ --block-device-mappings "${block_device_mappings[@]}" \ + --boot-mode $(read_image_info .boot_mode) \ "${extra_flags[@]}" \ | jq -r '.ImageId' ) diff --git a/nixos/maintainers/scripts/lxd/lxd-image-inner.nix b/nixos/maintainers/scripts/lxd/lxd-image-inner.nix new file mode 100644 index 000000000000..74634fd1671c --- /dev/null +++ b/nixos/maintainers/scripts/lxd/lxd-image-inner.nix @@ -0,0 +1,102 @@ +# Edit this configuration file to define what should be installed on +# your system. Help is available in the configuration.nix(5) man page +# and in the NixOS manual (accessible by running ‘nixos-help’). + +{ config, pkgs, lib, ... }: + +with lib; + +{ + imports = + [ # Include the default lxd configuration. + ../../../modules/virtualisation/lxc-container.nix + # Include the container-specific autogenerated configuration. + ./lxd.nix + ]; + + # networking.hostName = mkForce "nixos"; # Overwrite the hostname. + # networking.wireless.enable = true; # Enables wireless support via wpa_supplicant. + + # Set your time zone. + # time.timeZone = "Europe/Amsterdam"; + + # The global useDHCP flag is deprecated, therefore explicitly set to false here. + # Per-interface useDHCP will be mandatory in the future, so this generated config + # replicates the default behaviour. + networking.useDHCP = false; + networking.interfaces.eth0.useDHCP = true; + + # Configure network proxy if necessary + # networking.proxy.default = "http://user:password@proxy:port/"; + # networking.proxy.noProxy = "127.0.0.1,localhost,internal.domain"; + + # Select internationalisation properties. + # i18n.defaultLocale = "en_US.UTF-8"; + # console = { + # font = "Lat2-Terminus16"; + # keyMap = "us"; + # }; + + # Enable the X11 windowing system. + # services.xserver.enable = true; + + # Configure keymap in X11 + # services.xserver.layout = "us"; + # services.xserver.xkbOptions = "eurosign:e"; + + # Enable CUPS to print documents. + # services.printing.enable = true; + + # Enable sound. + # sound.enable = true; + # hardware.pulseaudio.enable = true; + + # Enable touchpad support (enabled default in most desktopManager). + # services.xserver.libinput.enable = true; + + # Define a user account. Don't forget to set a password with ‘passwd’. + # users.users.jane = { + # isNormalUser = true; + # extraGroups = [ "wheel" ]; # Enable ‘sudo’ for the user. + # }; + + # List packages installed in system profile. To search, run: + # $ nix search wget + # environment.systemPackages = with pkgs; [ + # vim # Do not forget to add an editor to edit configuration.nix! The Nano editor is also installed by default. + # wget + # firefox + # ]; + + # Some programs need SUID wrappers, can be configured further or are + # started in user sessions. + # programs.mtr.enable = true; + # programs.gnupg.agent = { + # enable = true; + # enableSSHSupport = true; + # }; + + # List services that you want to enable: + + # Enable the OpenSSH daemon. + # services.openssh.enable = true; + + # Open ports in the firewall. + # networking.firewall.allowedTCPPorts = [ ... ]; + # networking.firewall.allowedUDPPorts = [ ... ]; + # Or disable the firewall altogether. + # networking.firewall.enable = false; + + # This value determines the NixOS release from which the default + # settings for stateful data, like file locations and database versions + # on your system were taken. It‘s perfectly fine and recommended to leave + # this value at the release version of the first install of this system. + # Before changing this value read the documentation for this option + # (e.g. man configuration.nix or on https://nixos.org/nixos/options.html). + system.stateVersion = "21.05"; # Did you read the comment? + + # As this is intended as a stadalone image, undo some of the minimal profile stuff + documentation.enable = true; + documentation.nixos.enable = true; + environment.noXlibs = false; +} diff --git a/nixos/maintainers/scripts/lxd/lxd-image.nix b/nixos/maintainers/scripts/lxd/lxd-image.nix new file mode 100644 index 000000000000..c76b9fcc7f77 --- /dev/null +++ b/nixos/maintainers/scripts/lxd/lxd-image.nix @@ -0,0 +1,34 @@ +{ lib, config, pkgs, ... }: + +with lib; + +{ + imports = [ + ../../../modules/virtualisation/lxc-container.nix + ]; + + virtualisation.lxc.templates.nix = { + enable = true; + target = "/etc/nixos/lxd.nix"; + template = ./nix.tpl; + when = [ "create" "copy" ]; + }; + + # copy the config for nixos-rebuild + system.activationScripts.config = '' + if [ ! -e /etc/nixos/configuration.nix ]; then + mkdir -p /etc/nixos + cat ${./lxd-image-inner.nix} > /etc/nixos/configuration.nix + sed 's|../../../modules/virtualisation/lxc-container.nix||g' -i /etc/nixos/configuration.nix + fi + ''; + + # Network + networking.useDHCP = false; + networking.interfaces.eth0.useDHCP = true; + + # As this is intended as a stadalone image, undo some of the minimal profile stuff + documentation.enable = true; + documentation.nixos.enable = true; + environment.noXlibs = false; +} diff --git a/nixos/maintainers/scripts/lxd/nix.tpl b/nixos/maintainers/scripts/lxd/nix.tpl new file mode 100644 index 000000000000..307258ddc628 --- /dev/null +++ b/nixos/maintainers/scripts/lxd/nix.tpl @@ -0,0 +1,9 @@ +{ lib, config, pkgs, ... }: + +with lib; + +# WARNING: THIS CONFIGURATION IS AUTOGENERATED AND WILL BE OVERWRITTEN AUTOMATICALLY + +{ + networking.hostName = "{{ container.name }}"; +} diff --git a/nixos/modules/config/swap.nix b/nixos/modules/config/swap.nix index ff2ae1da31bd..9b005021086b 100644 --- a/nixos/modules/config/swap.nix +++ b/nixos/modules/config/swap.nix @@ -47,6 +47,15 @@ let ''; }; + allowDiscards = mkOption { + default = false; + type = types.bool; + description = '' + Whether to allow TRIM requests to the underlying device. This option + has security implications; please read the LUKS documentation before + activating it. + ''; + }; }; }; @@ -224,7 +233,8 @@ in fi ''} ${optionalString sw.randomEncryption.enable '' - cryptsetup plainOpen -c ${sw.randomEncryption.cipher} -d ${sw.randomEncryption.source} ${optionalString (sw.discardPolicy != null) "--allow-discards"} ${sw.device} ${sw.deviceName} + cryptsetup plainOpen -c ${sw.randomEncryption.cipher} -d ${sw.randomEncryption.source} \ + ${optionalString sw.randomEncryption.allowDiscards "--allow-discards"} ${sw.device} ${sw.deviceName} mkswap ${sw.realDevice} ''} ''; diff --git a/nixos/modules/hardware/video/nvidia.nix b/nixos/modules/hardware/video/nvidia.nix index 8f6b5c22ea4f..917c6d3013e7 100644 --- a/nixos/modules/hardware/video/nvidia.nix +++ b/nixos/modules/hardware/video/nvidia.nix @@ -284,6 +284,10 @@ in source = "${nvidia_x11.bin}/share/nvidia/nvidia-application-profiles-rc"; }; + # 'nvidia_x11' installs it's files to /run/opengl-driver/... + environment.etc."egl/egl_external_platform.d".source = + "/run/opengl-driver/share/egl/egl_external_platform.d/"; + hardware.opengl.package = mkIf (!offloadCfg.enable) nvidia_x11.out; hardware.opengl.package32 = mkIf (!offloadCfg.enable) nvidia_x11.lib32; hardware.opengl.extraPackages = optional offloadCfg.enable nvidia_x11.out; diff --git a/nixos/modules/installer/tools/nix-fallback-paths.nix b/nixos/modules/installer/tools/nix-fallback-paths.nix index cb509b7340bd..065cea470fbb 100644 --- a/nixos/modules/installer/tools/nix-fallback-paths.nix +++ b/nixos/modules/installer/tools/nix-fallback-paths.nix @@ -1,7 +1,7 @@ { - x86_64-linux = "/nix/store/nzp4m3cmm7wawk031byh8jg4cdzjq212-nix-2.3.16"; - i686-linux = "/nix/store/zsaza9pwim617ak15fsc31lv65b9w3in-nix-2.3.16"; - aarch64-linux = "/nix/store/7f6z40gyd405yd50qkyzwilnqw106bx8-nix-2.3.16"; - x86_64-darwin = "/nix/store/c43kyri67ia8mibs0id5ara7gqwlkybf-nix-2.3.16"; - aarch64-darwin = "/nix/store/6jwhak3cvsgnbqs540n27g8pxnk427fr-nix-2.3.16"; + x86_64-linux = "/nix/store/hapw7q1fkjxvprnkcgw9ppczavg4daj2-nix-2.4"; + i686-linux = "/nix/store/8qlvh8pp5j8wgrzj3is2jlbhgrwgsiy9-nix-2.4"; + aarch64-linux = "/nix/store/h48lkygcqj4hdibbdnpl67q7ks6vkrd6-nix-2.4"; + x86_64-darwin = "/nix/store/c3mvzszvyzakvcp9spnjvsb8m2bpjk7m-nix-2.4"; + aarch64-darwin = "/nix/store/hbfqs62r0hga2yr4zi5kc7fzhf71bq9n-nix-2.4"; } diff --git a/nixos/modules/module-list.nix b/nixos/modules/module-list.nix index eed0b802b95e..49509171c3f6 100644 --- a/nixos/modules/module-list.nix +++ b/nixos/modules/module-list.nix @@ -485,6 +485,9 @@ ./services/mail/roundcube.nix ./services/mail/sympa.nix ./services/mail/nullmailer.nix + ./services/matrix/mjolnir.nix + ./services/matrix/pantalaimon.nix + ./services/misc/ananicy.nix ./services/misc/airsonic.nix ./services/misc/ankisyncd.nix ./services/misc/apache-kafka.nix @@ -685,6 +688,7 @@ ./services/networking/3proxy.nix ./services/networking/adguardhome.nix ./services/networking/amuled.nix + ./services/networking/antennas.nix ./services/networking/aria2.nix ./services/networking/asterisk.nix ./services/networking/atftpd.nix @@ -772,6 +776,7 @@ ./services/networking/libreswan.nix ./services/networking/lldpd.nix ./services/networking/logmein-hamachi.nix + ./services/networking/lxd-image-server.nix ./services/networking/mailpile.nix ./services/networking/magic-wormhole-mailbox-server.nix ./services/networking/matterbridge.nix @@ -973,6 +978,7 @@ ./services/web-apps/atlassian/jira.nix ./services/web-apps/bookstack.nix ./services/web-apps/calibre-web.nix + ./services/web-apps/code-server.nix ./services/web-apps/convos.nix ./services/web-apps/cryptpad.nix ./services/web-apps/dex.nix @@ -1012,6 +1018,7 @@ ./services/web-apps/pgpkeyserver-lite.nix ./services/web-apps/matomo.nix ./services/web-apps/moinmoin.nix + ./services/web-apps/openwebrx.nix ./services/web-apps/restya-board.nix ./services/web-apps/sogo.nix ./services/web-apps/rss-bridge.nix @@ -1187,6 +1194,7 @@ ./virtualisation/virtualbox-guest.nix ./virtualisation/virtualbox-host.nix ./virtualisation/vmware-guest.nix + ./virtualisation/waydroid.nix ./virtualisation/xen-dom0.nix ./virtualisation/xe-guest-utilities.nix ] diff --git a/nixos/modules/programs/neovim.nix b/nixos/modules/programs/neovim.nix index 26d75caeb8de..4649662542de 100644 --- a/nixos/modules/programs/neovim.nix +++ b/nixos/modules/programs/neovim.nix @@ -41,7 +41,19 @@ in { withRuby = mkOption { type = types.bool; default = true; - description = "Enable ruby provider."; + description = "Enable Ruby provider."; + }; + + withPython3 = mkOption { + type = types.bool; + default = true; + description = "Enable Python 3 provider."; + }; + + withNodeJs = mkOption { + type = types.bool; + default = false; + description = "Enable Node provider."; }; configure = mkOption { @@ -142,7 +154,7 @@ in { environment.variables.EDITOR = mkIf cfg.defaultEditor (mkOverride 900 "nvim"); programs.neovim.finalPackage = pkgs.wrapNeovim cfg.package { - inherit (cfg) viAlias vimAlias; + inherit (cfg) viAlias vimAlias withPython3 withNodeJs withRuby; configure = cfg.configure // { customRC = (cfg.configure.customRC or "") + '' diff --git a/nixos/modules/security/doas.nix b/nixos/modules/security/doas.nix index 9a3daf4f504c..2a814f17e454 100644 --- a/nixos/modules/security/doas.nix +++ b/nixos/modules/security/doas.nix @@ -15,7 +15,7 @@ let (optionalString rule.noLog "nolog") (optionalString rule.persist "persist") (optionalString rule.keepEnv "keepenv") - "setenv { SSH_AUTH_SOCK ${concatStringsSep " " rule.setEnv} }" + "setenv { SSH_AUTH_SOCK TERMINFO TERMINFO_DIRS ${concatStringsSep " " rule.setEnv} }" ]; mkArgs = rule: diff --git a/nixos/modules/security/pam.nix b/nixos/modules/security/pam.nix index d6a6f7ce0827..7c8db9db0031 100644 --- a/nixos/modules/security/pam.nix +++ b/nixos/modules/security/pam.nix @@ -483,7 +483,7 @@ let if config.boot.isContainer then "optional" else "required" } pam_loginuid.so"} ${optionalString cfg.makeHomeDir - "session required ${pkgs.pam}/lib/security/pam_mkhomedir.so silent skel=${config.security.pam.makeHomeDir.skelDirectory} umask=0022"} + "session required ${pkgs.pam}/lib/security/pam_mkhomedir.so silent skel=${config.security.pam.makeHomeDir.skelDirectory} umask=0077"} ${optionalString cfg.updateWtmp "session required ${pkgs.pam}/lib/security/pam_lastlog.so silent"} ${optionalString config.security.pam.enableEcryptfs diff --git a/nixos/modules/services/audio/roon-server.nix b/nixos/modules/services/audio/roon-server.nix index 42da5a100170..566c7cae42ce 100644 --- a/nixos/modules/services/audio/roon-server.nix +++ b/nixos/modules/services/audio/roon-server.nix @@ -42,7 +42,7 @@ in { environment.ROON_DATAROOT = "/var/lib/${name}"; serviceConfig = { - ExecStart = "${pkgs.roon-server}/start.sh"; + ExecStart = "${pkgs.roon-server}/bin/RoonServer"; LimitNOFILE = 8192; User = cfg.user; Group = cfg.group; diff --git a/nixos/modules/services/cluster/hadoop/conf.nix b/nixos/modules/services/cluster/hadoop/conf.nix index 69472408cabe..0caec5cfc203 100644 --- a/nixos/modules/services/cluster/hadoop/conf.nix +++ b/nixos/modules/services/cluster/hadoop/conf.nix @@ -35,6 +35,7 @@ pkgs.runCommand "hadoop-conf" {} '' cp ${siteXml "hdfs-site.xml" cfg.hdfsSite}/* $out/ cp ${siteXml "mapred-site.xml" cfg.mapredSite}/* $out/ cp ${siteXml "yarn-site.xml" cfg.yarnSite}/* $out/ + cp ${siteXml "httpfs-site.xml" cfg.httpfsSite}/* $out/ cp ${cfgFile "container-executor.cfg" cfg.containerExecutorCfg}/* $out/ cp ${pkgs.writeTextDir "hadoop-user-functions.sh" userFunctions}/* $out/ cp ${pkgs.writeTextDir "hadoop-env.sh" hadoopEnv}/* $out/ diff --git a/nixos/modules/services/cluster/hadoop/default.nix b/nixos/modules/services/cluster/hadoop/default.nix index da3e47b95d4d..90f22c48e055 100644 --- a/nixos/modules/services/cluster/hadoop/default.nix +++ b/nixos/modules/services/cluster/hadoop/default.nix @@ -15,7 +15,10 @@ with lib; "fs.defaultFS" = "hdfs://localhost"; } ''; - description = "Hadoop core-site.xml definition"; + description = '' + Hadoop core-site.xml definition + + ''; }; hdfsSite = mkOption { @@ -28,7 +31,10 @@ with lib; "dfs.nameservices" = "namenode1"; } ''; - description = "Hadoop hdfs-site.xml definition"; + description = '' + Hadoop hdfs-site.xml definition + + ''; }; mapredSite = mkOption { @@ -44,7 +50,10 @@ with lib; "mapreduce.map.java.opts" = "-Xmx900m -XX:+UseParallelGC"; } ''; - description = "Hadoop mapred-site.xml definition"; + description = '' + Hadoop mapred-site.xml definition + + ''; }; yarnSite = mkOption { @@ -67,7 +76,24 @@ with lib; "yarn.resourcemanager.hostname" = "''${config.networking.hostName}"; } ''; - description = "Hadoop yarn-site.xml definition"; + description = '' + Hadoop yarn-site.xml definition + + ''; + }; + + httpfsSite = mkOption { + default = { }; + type = types.attrsOf types.anything; + example = literalExpression '' + { + "hadoop.http.max.threads" = 500; + } + ''; + description = '' + Hadoop httpfs-site.xml definition + + ''; }; log4jProperties = mkOption { @@ -92,7 +118,10 @@ with lib; "feature.terminal.enabled" = 0; } ''; - description = "Yarn container-executor.cfg definition"; + description = '' + Yarn container-executor.cfg definition + + ''; }; extraConfDirs = mkOption { @@ -118,7 +147,8 @@ with lib; config = mkMerge [ (mkIf (builtins.hasAttr "yarn" config.users.users || - builtins.hasAttr "hdfs" config.users.users) { + builtins.hasAttr "hdfs" config.users.users || + builtins.hasAttr "httpfs" config.users.users) { users.groups.hadoop = { gid = config.ids.gids.hadoop; }; diff --git a/nixos/modules/services/cluster/hadoop/hdfs.nix b/nixos/modules/services/cluster/hadoop/hdfs.nix index e347b682b902..be667aa82d8a 100644 --- a/nixos/modules/services/cluster/hadoop/hdfs.nix +++ b/nixos/modules/services/cluster/hadoop/hdfs.nix @@ -17,11 +17,14 @@ in { options.services.hadoop.hdfs = { namenode = { - enabled = mkOption { + enable = mkEnableOption "Whether to run the HDFS NameNode"; + formatOnInit = mkOption { type = types.bool; default = false; description = '' - Whether to run the HDFS NameNode + Format HDFS namenode on first start. This is useful for quickly spinning up ephemeral HDFS clusters with a single namenode. + For HA clusters, initialization involves multiple steps across multiple nodes. Follow [this guide](https://hadoop.apache.org/docs/stable/hadoop-project-dist/hadoop-hdfs/HDFSHighAvailabilityWithQJM.html) + to initialize an HA cluster manually. ''; }; inherit restartIfChanged; @@ -34,13 +37,7 @@ in }; }; datanode = { - enabled = mkOption { - type = types.bool; - default = false; - description = '' - Whether to run the HDFS DataNode - ''; - }; + enable = mkEnableOption "Whether to run the HDFS DataNode"; inherit restartIfChanged; openFirewall = mkOption { type = types.bool; @@ -50,18 +47,51 @@ in ''; }; }; + journalnode = { + enable = mkEnableOption "Whether to run the HDFS JournalNode"; + inherit restartIfChanged; + openFirewall = mkOption { + type = types.bool; + default = true; + description = '' + Open firewall ports for journalnode + ''; + }; + }; + zkfc = { + enable = mkEnableOption "Whether to run the HDFS ZooKeeper failover controller"; + inherit restartIfChanged; + }; + httpfs = { + enable = mkEnableOption "Whether to run the HDFS HTTPfs server"; + tempPath = mkOption { + type = types.path; + default = "/tmp/hadoop/httpfs"; + description = '' + HTTPFS_TEMP path used by HTTPFS + ''; + }; + inherit restartIfChanged; + openFirewall = mkOption { + type = types.bool; + default = true; + description = '' + Open firewall ports for HTTPFS + ''; + }; + }; }; config = mkMerge [ - (mkIf cfg.hdfs.namenode.enabled { + (mkIf cfg.hdfs.namenode.enable { systemd.services.hdfs-namenode = { description = "Hadoop HDFS NameNode"; wantedBy = [ "multi-user.target" ]; inherit (cfg.hdfs.namenode) restartIfChanged; - preStart = '' + preStart = (mkIf cfg.hdfs.namenode.formatOnInit '' ${cfg.package}/bin/hdfs --config ${hadoopConf} namenode -format -nonInteractive || true - ''; + ''); serviceConfig = { User = "hdfs"; @@ -74,9 +104,10 @@ in networking.firewall.allowedTCPPorts = (mkIf cfg.hdfs.namenode.openFirewall [ 9870 # namenode.http-address 8020 # namenode.rpc-address + 8022 # namenode. servicerpc-address ]); }) - (mkIf cfg.hdfs.datanode.enabled { + (mkIf cfg.hdfs.datanode.enable { systemd.services.hdfs-datanode = { description = "Hadoop HDFS DataNode"; wantedBy = [ "multi-user.target" ]; @@ -96,8 +127,64 @@ in 9867 # datanode.ipc.address ]); }) + (mkIf cfg.hdfs.journalnode.enable { + systemd.services.hdfs-journalnode = { + description = "Hadoop HDFS JournalNode"; + wantedBy = [ "multi-user.target" ]; + inherit (cfg.hdfs.journalnode) restartIfChanged; + + serviceConfig = { + User = "hdfs"; + SyslogIdentifier = "hdfs-journalnode"; + ExecStart = "${cfg.package}/bin/hdfs --config ${hadoopConf} journalnode"; + Restart = "always"; + }; + }; + + networking.firewall.allowedTCPPorts = (mkIf cfg.hdfs.journalnode.openFirewall [ + 8480 # dfs.journalnode.http-address + 8485 # dfs.journalnode.rpc-address + ]); + }) + (mkIf cfg.hdfs.zkfc.enable { + systemd.services.hdfs-zkfc = { + description = "Hadoop HDFS ZooKeeper failover controller"; + wantedBy = [ "multi-user.target" ]; + inherit (cfg.hdfs.zkfc) restartIfChanged; + + serviceConfig = { + User = "hdfs"; + SyslogIdentifier = "hdfs-zkfc"; + ExecStart = "${cfg.package}/bin/hdfs --config ${hadoopConf} zkfc"; + Restart = "always"; + }; + }; + }) + (mkIf cfg.hdfs.httpfs.enable { + systemd.services.hdfs-httpfs = { + description = "Hadoop httpfs"; + wantedBy = [ "multi-user.target" ]; + inherit (cfg.hdfs.httpfs) restartIfChanged; + + environment.HTTPFS_TEMP = cfg.hdfs.httpfs.tempPath; + + preStart = '' + mkdir -p $HTTPFS_TEMP + ''; + + serviceConfig = { + User = "httpfs"; + SyslogIdentifier = "hdfs-httpfs"; + ExecStart = "${cfg.package}/bin/hdfs --config ${hadoopConf} httpfs"; + Restart = "always"; + }; + }; + networking.firewall.allowedTCPPorts = (mkIf cfg.hdfs.httpfs.openFirewall [ + 14000 # httpfs.http.port + ]); + }) (mkIf ( - cfg.hdfs.namenode.enabled || cfg.hdfs.datanode.enabled + cfg.hdfs.namenode.enable || cfg.hdfs.datanode.enable || cfg.hdfs.journalnode.enable || cfg.hdfs.zkfc.enable ) { users.users.hdfs = { description = "Hadoop HDFS user"; @@ -105,6 +192,12 @@ in uid = config.ids.uids.hdfs; }; }) - + (mkIf cfg.hdfs.httpfs.enable { + users.users.httpfs = { + description = "Hadoop HTTPFS user"; + group = "hadoop"; + isSystemUser = true; + }; + }) ]; } diff --git a/nixos/modules/services/cluster/hadoop/yarn.nix b/nixos/modules/services/cluster/hadoop/yarn.nix index 0086a53e3b74..37c26ea10f76 100644 --- a/nixos/modules/services/cluster/hadoop/yarn.nix +++ b/nixos/modules/services/cluster/hadoop/yarn.nix @@ -17,13 +17,7 @@ in { options.services.hadoop.yarn = { resourcemanager = { - enabled = mkOption { - type = types.bool; - default = false; - description = '' - Whether to run the Hadoop YARN ResourceManager - ''; - }; + enable = mkEnableOption "Whether to run the Hadoop YARN ResourceManager"; inherit restartIfChanged; openFirewall = mkOption { type = types.bool; @@ -34,13 +28,7 @@ in }; }; nodemanager = { - enabled = mkOption { - type = types.bool; - default = false; - description = '' - Whether to run the Hadoop YARN NodeManager - ''; - }; + enable = mkEnableOption "Whether to run the Hadoop YARN NodeManager"; inherit restartIfChanged; addBinBash = mkOption { type = types.bool; @@ -62,7 +50,7 @@ in config = mkMerge [ (mkIf ( - cfg.yarn.resourcemanager.enabled || cfg.yarn.nodemanager.enabled + cfg.yarn.resourcemanager.enable || cfg.yarn.nodemanager.enable ) { users.users.yarn = { @@ -72,7 +60,7 @@ in }; }) - (mkIf cfg.yarn.resourcemanager.enabled { + (mkIf cfg.yarn.resourcemanager.enable { systemd.services.yarn-resourcemanager = { description = "Hadoop YARN ResourceManager"; wantedBy = [ "multi-user.target" ]; @@ -91,10 +79,11 @@ in 8030 # resourcemanager.scheduler.address 8031 # resourcemanager.resource-tracker.address 8032 # resourcemanager.address + 8033 # resourcemanager.admin.address ]); }) - (mkIf cfg.yarn.nodemanager.enabled { + (mkIf cfg.yarn.nodemanager.enable { # Needed because yarn hardcodes /bin/bash in container start scripts # These scripts can't be patched, they are generated at runtime systemd.tmpfiles.rules = [ diff --git a/nixos/modules/services/cluster/kubernetes/kubelet.nix b/nixos/modules/services/cluster/kubernetes/kubelet.nix index 3a2a0ed363d6..eb0cb1f3dbc0 100644 --- a/nixos/modules/services/cluster/kubernetes/kubelet.nix +++ b/nixos/modules/services/cluster/kubernetes/kubelet.nix @@ -258,6 +258,8 @@ in "net.bridge.bridge-nf-call-ip6tables" = 1; }; + systemd.enableUnifiedCgroupHierarchy = false; # true breaks node memory metrics + systemd.services.kubelet = { description = "Kubernetes Kubelet Service"; wantedBy = [ "kubernetes.target" ]; diff --git a/nixos/modules/services/desktops/pipewire/pipewire-media-session.nix b/nixos/modules/services/desktops/pipewire/pipewire-media-session.nix index 8f6c4fa1d4f6..4be3e881a9dc 100644 --- a/nixos/modules/services/desktops/pipewire/pipewire-media-session.nix +++ b/nixos/modules/services/desktops/pipewire/pipewire-media-session.nix @@ -13,10 +13,10 @@ let # Use upstream config files passed through spa-json-dump as the base # Patched here as necessary for them to work with this module defaults = { - alsa-monitor = (builtins.fromJSON (builtins.readFile ./media-session/alsa-monitor.conf.json)); - bluez-monitor = (builtins.fromJSON (builtins.readFile ./media-session/bluez-monitor.conf.json)); - media-session = (builtins.fromJSON (builtins.readFile ./media-session/media-session.conf.json)); - v4l2-monitor = (builtins.fromJSON (builtins.readFile ./media-session/v4l2-monitor.conf.json)); + alsa-monitor = lib.importJSON ./media-session/alsa-monitor.conf.json; + bluez-monitor = lib.importJSON ./media-session/bluez-monitor.conf.json; + media-session = lib.importJSON ./media-session/media-session.conf.json; + v4l2-monitor = lib.importJSON ./media-session/v4l2-monitor.conf.json; }; configs = { diff --git a/nixos/modules/services/desktops/pipewire/pipewire.nix b/nixos/modules/services/desktops/pipewire/pipewire.nix index 273d518033db..55755ecd6457 100644 --- a/nixos/modules/services/desktops/pipewire/pipewire.nix +++ b/nixos/modules/services/desktops/pipewire/pipewire.nix @@ -22,11 +22,11 @@ let # Use upstream config files passed through spa-json-dump as the base # Patched here as necessary for them to work with this module defaults = { - client = builtins.fromJSON (builtins.readFile ./daemon/client.conf.json); - client-rt = builtins.fromJSON (builtins.readFile ./daemon/client-rt.conf.json); - jack = builtins.fromJSON (builtins.readFile ./daemon/jack.conf.json); - pipewire = builtins.fromJSON (builtins.readFile ./daemon/pipewire.conf.json); - pipewire-pulse = builtins.fromJSON (builtins.readFile ./daemon/pipewire-pulse.conf.json); + client = lib.importJSON ./daemon/client.conf.json; + client-rt = lib.importJSON ./daemon/client-rt.conf.json; + jack = lib.importJSON ./daemon/jack.conf.json; + pipewire = lib.importJSON ./daemon/pipewire.conf.json; + pipewire-pulse = lib.importJSON ./daemon/pipewire-pulse.conf.json; }; configs = { diff --git a/nixos/modules/services/finance/odoo.nix b/nixos/modules/services/finance/odoo.nix index 3fcb2b3966a5..422ee9510074 100644 --- a/nixos/modules/services/finance/odoo.nix +++ b/nixos/modules/services/finance/odoo.nix @@ -22,14 +22,14 @@ in type = with types; listOf package; default = []; example = literalExpression "[ pkgs.odoo_enterprise ]"; - description = "Odoo addons"; + description = "Odoo addons."; }; settings = mkOption { type = format.type; default = {}; description = '' - Odoo configuration settings. For more details see https://www.odoo.com/documentation/15.0/administration/install/deploy.html + Odoo configuration settings. For more details see ''; }; diff --git a/nixos/modules/services/mail/postfix.nix b/nixos/modules/services/mail/postfix.nix index 6fc09682e0c0..23d3574ae27c 100644 --- a/nixos/modules/services/mail/postfix.nix +++ b/nixos/modules/services/mail/postfix.nix @@ -294,7 +294,7 @@ in }; submissionOptions = mkOption { - type = types.attrs; + type = with types; attrsOf str; default = { smtpd_tls_security_level = "encrypt"; smtpd_sasl_auth_enable = "yes"; @@ -312,7 +312,7 @@ in }; submissionsOptions = mkOption { - type = types.attrs; + type = with types; attrsOf str; default = { smtpd_sasl_auth_enable = "yes"; smtpd_client_restrictions = "permit_sasl_authenticated,reject"; diff --git a/nixos/modules/services/matrix/mjolnir.nix b/nixos/modules/services/matrix/mjolnir.nix new file mode 100644 index 000000000000..8a54f93d98d8 --- /dev/null +++ b/nixos/modules/services/matrix/mjolnir.nix @@ -0,0 +1,240 @@ +{ config, lib, pkgs, ... }: + +with lib; +let + cfg = config.services.mjolnir; + + yamlConfig = { + inherit (cfg) dataPath managementRoom protectedRooms; + + accessToken = "@ACCESS_TOKEN@"; # will be replaced in "generateConfig" + homeserverUrl = + if cfg.pantalaimon.enable then + "http://${cfg.pantalaimon.options.listenAddress}:${toString cfg.pantalaimon.options.listenPort}" + else + cfg.homeserverUrl; + + pantalaimon = { + inherit (cfg.pantalaimon) username; + + use = cfg.pantalaimon.enable; + password = "@PANTALAIMON_PASSWORD@"; # will be replaced in "generateConfig" + }; + }; + + moduleConfigFile = pkgs.writeText "module-config.yaml" ( + generators.toYAML { } (filterAttrs (_: v: v != null) + (fold recursiveUpdate { } [ yamlConfig cfg.settings ]))); + + # these config files will be merged one after the other to build the final config + configFiles = [ + "${pkgs.mjolnir}/share/mjolnir/config/default.yaml" + moduleConfigFile + ]; + + # this will generate the default.yaml file with all configFiles as inputs and + # replace all secret strings using replace-secret + generateConfig = pkgs.writeShellScript "mjolnir-generate-config" ( + let + yqEvalStr = concatImapStringsSep " * " (pos: _: "select(fileIndex == ${toString (pos - 1)})") configFiles; + yqEvalArgs = concatStringsSep " " configFiles; + in + '' + set -euo pipefail + + umask 077 + + # mjolnir will try to load a config from "./config/default.yaml" in the working directory + # -> let's place the generated config there + mkdir -p ${cfg.dataPath}/config + + # merge all config files into one, overriding settings of the previous one with the next config + # e.g. "eval-all 'select(fileIndex == 0) * select(fileIndex == 1)' filea.yaml fileb.yaml" will merge filea.yaml with fileb.yaml + ${pkgs.yq-go}/bin/yq eval-all -P '${yqEvalStr}' ${yqEvalArgs} > ${cfg.dataPath}/config/default.yaml + + ${optionalString (cfg.accessTokenFile != null) '' + ${pkgs.replace-secret}/bin/replace-secret '@ACCESS_TOKEN@' '${cfg.accessTokenFile}' ${cfg.dataPath}/config/default.yaml + ''} + ${optionalString (cfg.pantalaimon.passwordFile != null) '' + ${pkgs.replace-secret}/bin/replace-secret '@PANTALAIMON_PASSWORD@' '${cfg.pantalaimon.passwordFile}' ${cfg.dataPath}/config/default.yaml + ''} + '' + ); +in +{ + options.services.mjolnir = { + enable = mkEnableOption "Mjolnir, a moderation tool for Matrix"; + + homeserverUrl = mkOption { + type = types.str; + default = "https://matrix.org"; + description = '' + Where the homeserver is located (client-server URL). + + If pantalaimon.enable is true, this option will become the homeserver to which pantalaimon connects. + The listen address of pantalaimon will then become the homeserverUrl of mjolnir. + ''; + }; + + accessTokenFile = mkOption { + type = with types; nullOr path; + default = null; + description = '' + File containing the matrix access token for the mjolnir user. + ''; + }; + + pantalaimon = mkOption { + description = '' + pantalaimon options (enables E2E Encryption support). + + This will create a pantalaimon instance with the name "mjolnir". + ''; + default = { }; + type = types.submodule { + options = { + enable = mkEnableOption '' + If true, accessToken is ignored and the username/password below will be + used instead. The access token of the bot will be stored in the dataPath. + ''; + + username = mkOption { + type = types.str; + description = "The username to login with."; + }; + + passwordFile = mkOption { + type = with types; nullOr path; + default = null; + description = '' + File containing the matrix password for the mjolnir user. + ''; + }; + + options = mkOption { + type = types.submodule (import ./pantalaimon-options.nix); + default = { }; + description = '' + passthrough additional options to the pantalaimon service. + ''; + }; + }; + }; + }; + + dataPath = mkOption { + type = types.path; + default = "/var/lib/mjolnir"; + description = '' + The directory the bot should store various bits of information in. + ''; + }; + + managementRoom = mkOption { + type = types.str; + default = "#moderators:example.org"; + description = '' + The room ID where people can use the bot. The bot has no access controls, so + anyone in this room can use the bot - secure your room! + This should be a room alias or room ID - not a matrix.to URL. + Note: mjolnir is fairly verbose - expect a lot of messages from it. + ''; + }; + + protectedRooms = mkOption { + type = types.listOf types.str; + default = [ ]; + example = literalExpression '' + [ + "https://matrix.to/#/#yourroom:example.org" + "https://matrix.to/#/#anotherroom:example.org" + ] + ''; + description = '' + A list of rooms to protect (matrix.to URLs). + ''; + }; + + settings = mkOption { + default = { }; + type = (pkgs.formats.yaml { }).type; + example = literalExpression '' + { + autojoinOnlyIfManager = true; + automaticallyRedactForReasons = [ "spam" "advertising" ]; + } + ''; + description = '' + Additional settings (see mjolnir default config for available settings). These settings will override settings made by the module config. + ''; + }; + }; + + config = mkIf config.services.mjolnir.enable { + assertions = [ + { + assertion = !(cfg.pantalaimon.enable && cfg.pantalaimon.passwordFile == null); + message = "Specify pantalaimon.passwordFile"; + } + { + assertion = !(cfg.pantalaimon.enable && cfg.accessTokenFile != null); + message = "Do not specify accessTokenFile when using pantalaimon"; + } + { + assertion = !(!cfg.pantalaimon.enable && cfg.accessTokenFile == null); + message = "Specify accessTokenFile when not using pantalaimon"; + } + ]; + + services.pantalaimon-headless.instances."mjolnir" = mkIf cfg.pantalaimon.enable + { + homeserver = cfg.homeserverUrl; + } // cfg.pantalaimon.options; + + systemd.services.mjolnir = { + description = "mjolnir - a moderation tool for Matrix"; + wants = [ "network-online.target" ] ++ optionals (cfg.pantalaimon.enable) [ "pantalaimon-mjolnir.service" ]; + after = [ "network-online.target" ] ++ optionals (cfg.pantalaimon.enable) [ "pantalaimon-mjolnir.service" ]; + wantedBy = [ "multi-user.target" ]; + + serviceConfig = { + ExecStart = ''${pkgs.mjolnir}/bin/mjolnir''; + ExecStartPre = [ generateConfig ]; + WorkingDirectory = cfg.dataPath; + StateDirectory = "mjolnir"; + StateDirectoryMode = "0700"; + ProtectSystem = "strict"; + ProtectHome = true; + PrivateTmp = true; + NoNewPrivileges = true; + PrivateDevices = true; + User = "mjolnir"; + Restart = "on-failure"; + + /* TODO: wait for #102397 to be resolved. Then load secrets from $CREDENTIALS_DIRECTORY+"/NAME" + DynamicUser = true; + LoadCredential = [] ++ + optionals (cfg.accessTokenFile != null) [ + "access_token:${cfg.accessTokenFile}" + ] ++ + optionals (cfg.pantalaimon.passwordFile != null) [ + "pantalaimon_password:${cfg.pantalaimon.passwordFile}" + ]; + */ + }; + }; + + users = { + users.mjolnir = { + group = "mjolnir"; + isSystemUser = true; + }; + groups.mjolnir = { }; + }; + }; + + meta = { + doc = ./mjolnir.xml; + maintainers = with maintainers; [ jojosch ]; + }; +} diff --git a/nixos/modules/services/matrix/mjolnir.xml b/nixos/modules/services/matrix/mjolnir.xml new file mode 100644 index 000000000000..d462ddf7b01b --- /dev/null +++ b/nixos/modules/services/matrix/mjolnir.xml @@ -0,0 +1,134 @@ + + Mjolnir (Matrix Moderation Tool) + + This chapter will show you how to set up your own, self-hosted + Mjolnir + instance. + + + As an all-in-one moderation tool, it can protect your server from + malicious invites, spam messages, and whatever else you don't want. + In addition to server-level protection, Mjolnir is great for communities + wanting to protect their rooms without having to use their personal + accounts for moderation. + + + The bot by default includes support for bans, redactions, anti-spam, + server ACLs, room directory changes, room alias transfers, account + deactivation, room shutdown, and more. + + + See the README + page and the Moderator's guide + for additional instructions on how to setup and use Mjolnir. + + + For additional settings + see the default configuration. + +
+ Mjolnir Setup + + First create a new Room which will be used as a management room for Mjolnir. In + this room, Mjolnir will log possible errors and debugging information. You'll + need to set this Room-ID in services.mjolnir.managementRoom. + + + Next, create a new user for Mjolnir on your homeserver, if not present already. + + + The Mjolnir Matrix user expects to be free of any rate limiting. + See Synapse #6286 + for an example on how to achieve this. + + + If you want Mjolnir to be able to deactivate users, move room aliases, shutdown rooms, etc. + you'll need to make the Mjolnir user a Matrix server admin. + + + Now invite the Mjolnir user to the management room. + + + It is recommended to use Pantalaimon, + so your management room can be encrypted. This also applies if you are looking to moderate an encrypted room. + + + To enable the Pantalaimon E2E Proxy for mjolnir, enable + services.mjolnir.pantalaimon. This will + autoconfigure a new Pantalaimon instance, which will connect to the homeserver + set in services.mjolnir.homeserverUrl and Mjolnir itself + will be configured to connect to the new Pantalaimon instance. + + +{ + services.mjolnir = { + enable = true; + homeserverUrl = "https://matrix.domain.tld"; + pantalaimon = { + enable = true; + username = "mjolnir"; + passwordFile = "/run/secrets/mjolnir-password"; + }; + protectedRooms = [ + "https://matrix.to/#/!xxx:domain.tld" + ]; + managementRoom = "!yyy:domain.tld"; + }; +} + +
+ Element Matrix Services (EMS) + + If you are using a managed "Element Matrix Services (EMS)" + server, you will need to consent to the terms and conditions. Upon startup, an error + log entry with a URL to the consent page will be generated. + +
+
+ +
+ Synapse Antispam Module + + A Synapse module is also available to apply the same rulesets the bot + uses across an entire homeserver. + + + To use the Antispam Module, add matrix-synapse-plugins.matrix-synapse-mjolnir-antispam + to the Synapse plugin list and enable the mjolnir.AntiSpam module. + + +{ + services.matrix-synapse = { + plugins = with pkgs; [ + matrix-synapse-plugins.matrix-synapse-mjolnir-antispam + ]; + extraConfig = '' + modules: + - module: mjolnir.AntiSpam + config: + # Prevent servers/users in the ban lists from inviting users on this + # server to rooms. Default true. + block_invites: true + # Flag messages sent by servers/users in the ban lists as spam. Currently + # this means that spammy messages will appear as empty to users. Default + # false. + block_messages: false + # Remove users from the user directory search by filtering matrix IDs and + # display names by the entries in the user ban list. Default false. + block_usernames: false + # The room IDs of the ban lists to honour. Unlike other parts of Mjolnir, + # this list cannot be room aliases or permalinks. This server is expected + # to already be joined to the room - Mjolnir will not automatically join + # these rooms. + ban_lists: + - "!roomid:example.org" + ''; + }; +} + +
+ diff --git a/nixos/modules/services/matrix/pantalaimon-options.nix b/nixos/modules/services/matrix/pantalaimon-options.nix new file mode 100644 index 000000000000..035c57540d09 --- /dev/null +++ b/nixos/modules/services/matrix/pantalaimon-options.nix @@ -0,0 +1,70 @@ +{ config, lib, name, ... }: + +with lib; +{ + options = { + dataPath = mkOption { + type = types.path; + default = "/var/lib/pantalaimon-${name}"; + description = '' + The directory where pantalaimon should store its state such as the database file. + ''; + }; + + logLevel = mkOption { + type = types.enum [ "info" "warning" "error" "debug" ]; + default = "warning"; + description = '' + Set the log level of the daemon. + ''; + }; + + homeserver = mkOption { + type = types.str; + example = "https://matrix.org"; + description = '' + The URI of the homeserver that the pantalaimon proxy should + forward requests to, without the matrix API path but including + the http(s) schema. + ''; + }; + + ssl = mkOption { + type = types.bool; + default = true; + description = '' + Whether or not SSL verification should be enabled for outgoing + connections to the homeserver. + ''; + }; + + listenAddress = mkOption { + type = types.str; + default = "localhost"; + description = '' + The address where the daemon will listen to client connections + for this homeserver. + ''; + }; + + listenPort = mkOption { + type = types.port; + default = 8009; + description = '' + The port where the daemon will listen to client connections for + this homeserver. Note that the listen address/port combination + needs to be unique between different homeservers. + ''; + }; + + extraSettings = mkOption { + type = types.attrs; + default = { }; + description = '' + Extra configuration options. See + pantalaimon(5) + for available options. + ''; + }; + }; +} diff --git a/nixos/modules/services/matrix/pantalaimon.nix b/nixos/modules/services/matrix/pantalaimon.nix new file mode 100644 index 000000000000..63b40099ca5d --- /dev/null +++ b/nixos/modules/services/matrix/pantalaimon.nix @@ -0,0 +1,70 @@ +{ config, lib, pkgs, ... }: + +with lib; +let + cfg = config.services.pantalaimon-headless; + + iniFmt = pkgs.formats.ini { }; + + mkConfigFile = name: instanceConfig: iniFmt.generate "pantalaimon.conf" { + Default = { + LogLevel = instanceConfig.logLevel; + Notifications = false; + }; + + ${name} = (recursiveUpdate + { + Homeserver = instanceConfig.homeserver; + ListenAddress = instanceConfig.listenAddress; + ListenPort = instanceConfig.listenPort; + SSL = instanceConfig.ssl; + + # Set some settings to prevent user interaction for headless operation + IgnoreVerification = true; + UseKeyring = false; + } + instanceConfig.extraSettings + ); + }; + + mkPantalaimonService = name: instanceConfig: + nameValuePair "pantalaimon-${name}" { + description = "pantalaimon instance ${name} - E2EE aware proxy daemon for matrix clients"; + wants = [ "network-online.target" ]; + after = [ "network-online.target" ]; + wantedBy = [ "multi-user.target" ]; + + serviceConfig = { + ExecStart = ''${pkgs.pantalaimon-headless}/bin/pantalaimon --config ${mkConfigFile name instanceConfig} --data-path ${instanceConfig.dataPath}''; + Restart = "on-failure"; + DynamicUser = true; + NoNewPrivileges = true; + PrivateDevices = true; + PrivateTmp = true; + ProtectHome = true; + ProtectSystem = "strict"; + StateDirectory = "pantalaimon-${name}"; + }; + }; +in +{ + options.services.pantalaimon-headless.instances = mkOption { + default = { }; + type = types.attrsOf (types.submodule (import ./pantalaimon-options.nix)); + description = '' + Declarative instance config. + + Note: to use pantalaimon interactively, e.g. for a Matrix client which does not + support End-to-end encryption (like fractal), refer to the home-manager module. + ''; + }; + + config = mkIf (config.services.pantalaimon-headless.instances != { }) + { + systemd.services = mapAttrs' mkPantalaimonService config.services.pantalaimon-headless.instances; + }; + + meta = { + maintainers = with maintainers; [ jojosch ]; + }; +} diff --git a/nixos/modules/services/misc/ananicy.nix b/nixos/modules/services/misc/ananicy.nix new file mode 100644 index 000000000000..f76f534fb450 --- /dev/null +++ b/nixos/modules/services/misc/ananicy.nix @@ -0,0 +1,107 @@ +{ config, lib, pkgs, ... }: + +with lib; + +let + cfg = config.services.ananicy; + configFile = pkgs.writeText "ananicy.conf" (generators.toKeyValue { } cfg.settings); + extraRules = pkgs.writeText "extraRules" cfg.extraRules; + servicename = if ((lib.getName cfg.package) == (lib.getName pkgs.ananicy-cpp)) then "ananicy-cpp" else "ananicy"; +in +{ + options = { + services.ananicy = { + enable = mkEnableOption "Ananicy, an auto nice daemon"; + + package = mkOption { + type = types.package; + default = pkgs.ananicy; + defaultText = literalExpression "pkgs.ananicy"; + example = literalExpression "pkgs.ananicy-cpp"; + description = '' + Which ananicy package to use. + ''; + }; + + settings = mkOption { + type = with types; attrsOf (oneOf [ int bool str ]); + default = { }; + example = { + apply_nice = false; + }; + description = '' + See + ''; + }; + + extraRules = mkOption { + type = types.str; + default = ""; + description = '' + Extra rules in json format on separate lines. See: + + + ''; + example = literalExpression '' + ''' + { "name": "eog", "type": "Image-View" } + { "name": "fdupes", "type": "BG_CPUIO" } + ''' + ''; + + }; + }; + }; + + config = mkIf cfg.enable { + environment = { + systemPackages = [ cfg.package ]; + etc."ananicy.d".source = pkgs.runCommandLocal "ananicyfiles" { } '' + mkdir -p $out + # ananicy-cpp does not include rules or settings on purpose + cp -r ${pkgs.ananicy}/etc/ananicy.d/* $out + rm $out/ananicy.conf + cp ${configFile} $out/ananicy.conf + ${optionalString (cfg.extraRules != "") "cp ${extraRules} $out/nixRules.rules"} + ''; + }; + + # ananicy and ananicy-cpp have different default settings + services.ananicy.settings = + let + mkOD = mkOptionDefault; + in + { + cgroup_load = mkOD true; + type_load = mkOD true; + rule_load = mkOD true; + apply_nice = mkOD true; + apply_ioclass = mkOD true; + apply_ionice = mkOD true; + apply_sched = mkOD true; + apply_oom_score_adj = mkOD true; + apply_cgroup = mkOD true; + } // (if ((lib.getName cfg.package) == (lib.getName pkgs.ananicy-cpp)) then { + # https://gitlab.com/ananicy-cpp/ananicy-cpp/-/blob/master/src/config.cpp#L12 + loglevel = mkOD "warn"; # default is info but its spammy + cgroup_realtime_workaround = mkOD true; + } else { + # https://github.com/Nefelim4ag/Ananicy/blob/master/ananicy.d/ananicy.conf + check_disks_schedulers = mkOD true; + check_freq = mkOD 5; + }); + + systemd = { + # https://gitlab.com/ananicy-cpp/ananicy-cpp/#cgroups applies to both ananicy and -cpp + enableUnifiedCgroupHierarchy = mkDefault false; + packages = [ cfg.package ]; + services."${servicename}" = { + wantedBy = [ "default.target" ]; + }; + }; + }; + + meta = { + maintainers = with maintainers; [ artturin ]; + }; +} diff --git a/nixos/modules/services/misc/xmrig.nix b/nixos/modules/services/misc/xmrig.nix new file mode 100644 index 000000000000..15c7d2a7b14c --- /dev/null +++ b/nixos/modules/services/misc/xmrig.nix @@ -0,0 +1,71 @@ +{ config, pkgs, lib, ... }: + + +let + cfg = config.services.xmrig; + + json = pkgs.formats.json { }; + configFile = json.generate "config.json" cfg.settings; +in + +with lib; + +{ + options = { + services.xmrig = { + enable = mkEnableOption "XMRig Mining Software"; + + package = mkOption { + type = types.package; + default = pkgs.xmrig; + example = literalExpression "pkgs.xmrig-mo"; + description = "XMRig package to use."; + }; + + settings = mkOption { + default = { }; + type = json.type; + example = literalExpression '' + { + autosave = true; + cpu = true; + opencl = false; + cuda = false; + pools = [ + { + url = "pool.supportxmr.com:443"; + user = "your-wallet"; + keepalive = true; + tls = true; + } + ] + } + ''; + description = '' + XMRig configuration. Refer to + + for details on supported values. + ''; + }; + }; + }; + + config = mkIf cfg.enable { + systemd.services.xmrig = { + wantedBy = [ "multi-user.target" ]; + after = [ "network.target" ]; + description = "XMRig Mining Software Service"; + serviceConfig = { + ExecStartPre = "${cfg.package}/bin/xmrig --config=${configFile} --dry-run"; + ExecStart = "${cfg.package}/bin/xmrig --config=${configFile}"; + DynamicUser = true; + }; + }; + }; + + meta = with lib; { + description = "XMRig Mining Software Service"; + license = licenses.gpl3Only; + maintainers = with maintainers; [ ratsclub ]; + }; +} diff --git a/nixos/modules/services/monitoring/collectd.nix b/nixos/modules/services/monitoring/collectd.nix index ad0cf4735ad4..6af04d22f0f7 100644 --- a/nixos/modules/services/monitoring/collectd.nix +++ b/nixos/modules/services/monitoring/collectd.nix @@ -57,7 +57,7 @@ in { description = '' Build a minimal collectd package with only the configured `services.collectd.plugins` ''; - type = types.bool; + type = bool; }; user = mkOption { @@ -98,7 +98,7 @@ in { description = '' Attribute set of plugin names to plugin config segments ''; - type = types.attrsOf types.str; + type = attrsOf lines; }; extraConfig = mkOption { diff --git a/nixos/modules/services/monitoring/prometheus/default.nix b/nixos/modules/services/monitoring/prometheus/default.nix index d2b37cf688bf..f20b8dde1abd 100644 --- a/nixos/modules/services/monitoring/prometheus/default.nix +++ b/nixos/modules/services/monitoring/prometheus/default.nix @@ -7,19 +7,36 @@ let workingDir = "/var/lib/" + cfg.stateDir; + prometheusYmlOut = "${workingDir}/prometheus-substituted.yaml"; + + triggerReload = pkgs.writeShellScriptBin "trigger-reload-prometheus" '' + PATH="${makeBinPath (with pkgs; [ systemd ])}" + if systemctl -q is-active prometheus.service; then + systemctl reload prometheus.service + fi + ''; + + reload = pkgs.writeShellScriptBin "reload-prometheus" '' + PATH="${makeBinPath (with pkgs; [ systemd coreutils gnugrep ])}" + cursor=$(journalctl --show-cursor -n0 | grep -oP "cursor: \K.*") + kill -HUP $MAINPID + journalctl -u prometheus.service --after-cursor="$cursor" -f \ + | grep -m 1 "Completed loading of configuration file" > /dev/null + ''; + # a wrapper that verifies that the configuration is valid promtoolCheck = what: name: file: if cfg.checkConfig then pkgs.runCommandLocal "${name}-${replaceStrings [" "] [""] what}-checked" { buildInputs = [ cfg.package ]; } '' - ln -s ${file} $out - promtool ${what} $out - '' else file; + ln -s ${file} $out + promtool ${what} $out + '' else file; # Pretty-print JSON to a file writePrettyJSON = name: x: - pkgs.runCommandLocal name {} '' + pkgs.runCommandLocal name { } '' echo '${builtins.toJSON x}' | ${pkgs.jq}/bin/jq . > $out ''; @@ -39,48 +56,111 @@ let }; }; - prometheusYml = let - yml = if cfg.configText != null then - pkgs.writeText "prometheus.yml" cfg.configText - else generatedPrometheusYml; - in promtoolCheck "check config" "prometheus.yml" yml; + prometheusYml = + let + yml = + if cfg.configText != null then + pkgs.writeText "prometheus.yml" cfg.configText + else generatedPrometheusYml; + in + promtoolCheck "check config" "prometheus.yml" yml; cmdlineArgs = cfg.extraFlags ++ [ "--storage.tsdb.path=${workingDir}/data/" - "--config.file=/run/prometheus/prometheus-substituted.yaml" + "--config.file=${ + if cfg.enableReload + then "/etc/prometheus/prometheus.yaml" + else prometheusYml + }" "--web.listen-address=${cfg.listenAddress}:${builtins.toString cfg.port}" "--alertmanager.notification-queue-capacity=${toString cfg.alertmanagerNotificationQueueCapacity}" "--alertmanager.timeout=${toString cfg.alertmanagerTimeout}s" ] ++ optional (cfg.webExternalUrl != null) "--web.external-url=${cfg.webExternalUrl}" - ++ optional (cfg.retentionTime != null) "--storage.tsdb.retention.time=${cfg.retentionTime}"; + ++ optional (cfg.retentionTime != null) "--storage.tsdb.retention.time=${cfg.retentionTime}"; filterValidPrometheus = filterAttrsListRecursive (n: v: !(n == "_module" || v == null)); filterAttrsListRecursive = pred: x: if isAttrs x then - listToAttrs ( - concatMap (name: - let v = x.${name}; in - if pred name v then [ - (nameValuePair name (filterAttrsListRecursive pred v)) - ] else [] - ) (attrNames x) - ) + listToAttrs + ( + concatMap + (name: + let v = x.${name}; in + if pred name v then [ + (nameValuePair name (filterAttrsListRecursive pred v)) + ] else [ ] + ) + (attrNames x) + ) else if isList x then map (filterAttrsListRecursive pred) x else x; - mkDefOpt = type : defaultStr : description : mkOpt type (description + '' + # + # Config types: helper functions + # + + mkDefOpt = type: defaultStr: description: mkOpt type (description + '' Defaults to ${defaultStr} in prometheus when set to null. ''); - mkOpt = type : description : mkOption { + mkOpt = type: description: mkOption { type = types.nullOr type; default = null; inherit description; }; + mkSdConfigModule = extraOptions: types.submodule { + options = { + basic_auth = mkOpt promTypes.basic_auth '' + Optional HTTP basic authentication information. + ''; + + authorization = mkOpt + (types.submodule { + options = { + type = mkDefOpt types.str "Bearer" '' + Sets the authentication type. + ''; + + credentials = mkOpt types.str '' + Sets the credentials. It is mutually exclusive with `credentials_file`. + ''; + + credentials_file = mkOpt types.str '' + Sets the credentials to the credentials read from the configured file. + It is mutually exclusive with `credentials`. + ''; + }; + }) '' + Optional `Authorization` header configuration. + ''; + + oauth2 = mkOpt promtypes.oauth2 '' + Optional OAuth 2.0 configuration. + Cannot be used at the same time as basic_auth or authorization. + ''; + + proxy_url = mkOpt types.str '' + Optional proxy URL. + ''; + + follow_redirects = mkDefOpt types.bool "true" '' + Configure whether HTTP requests follow HTTP 3xx redirects. + ''; + + tls_config = mkOpt promTypes.tls_config '' + TLS configuration. + ''; + } // extraOptions; + }; + + # + # Config types: general + # + promTypes.globalConfig = types.submodule { options = { scrape_interval = mkDefOpt types.str "1m" '' @@ -103,153 +183,68 @@ let }; }; - promTypes.remote_read = types.submodule { + promTypes.basic_auth = types.submodule { options = { - url = mkOption { + username = mkOption { type = types.str; description = '' - ServerName extension to indicate the name of the server. - http://tools.ietf.org/html/rfc4366#section-3.1 + HTTP username ''; }; - name = mkOpt types.str '' - Name of the remote read config, which if specified must be unique among remote read configs. - The name will be used in metrics and logging in place of a generated value to help users distinguish between - remote read configs. - ''; - required_matchers = mkOpt (types.attrsOf types.str) '' - An optional list of equality matchers which have to be - present in a selector to query the remote read endpoint. - ''; - remote_timeout = mkOpt types.str '' - Timeout for requests to the remote read endpoint. - ''; - read_recent = mkOpt types.bool '' - Whether reads should be made for queries for time ranges that - the local storage should have complete data for. - ''; - basic_auth = mkOpt (types.submodule { - options = { - username = mkOption { - type = types.str; - description = '' - HTTP username - ''; - }; - password = mkOpt types.str "HTTP password"; - password_file = mkOpt types.str "HTTP password file"; - }; - }) '' - Sets the `Authorization` header on every remote read request with the - configured username and password. - password and password_file are mutually exclusive. - ''; - bearer_token = mkOpt types.str '' - Sets the `Authorization` header on every remote read request with - the configured bearer token. It is mutually exclusive with `bearer_token_file`. - ''; - bearer_token_file = mkOpt types.str '' - Sets the `Authorization` header on every remote read request with the bearer token - read from the configured file. It is mutually exclusive with `bearer_token`. - ''; - tls_config = mkOpt promTypes.tls_config '' - Configures the remote read request's TLS settings. - ''; - proxy_url = mkOpt types.str "Optional Proxy URL."; + password = mkOpt types.str "HTTP password"; + password_file = mkOpt types.str "HTTP password file"; }; }; - promTypes.remote_write = types.submodule { + promTypes.tls_config = types.submodule { options = { - url = mkOption { - type = types.str; - description = '' - ServerName extension to indicate the name of the server. - http://tools.ietf.org/html/rfc4366#section-3.1 - ''; - }; - remote_timeout = mkOpt types.str '' - Timeout for requests to the remote write endpoint. + ca_file = mkOpt types.str '' + CA certificate to validate API server certificate with. ''; - write_relabel_configs = mkOpt (types.listOf promTypes.relabel_config) '' - List of remote write relabel configurations. + + cert_file = mkOpt types.str '' + Certificate file for client cert authentication to the server. ''; - name = mkOpt types.str '' - Name of the remote write config, which if specified must be unique among remote write configs. - The name will be used in metrics and logging in place of a generated value to help users distinguish between - remote write configs. + + key_file = mkOpt types.str '' + Key file for client cert authentication to the server. ''; - basic_auth = mkOpt (types.submodule { - options = { - username = mkOption { - type = types.str; - description = '' - HTTP username - ''; - }; - password = mkOpt types.str "HTTP password"; - password_file = mkOpt types.str "HTTP password file"; - }; - }) '' - Sets the `Authorization` header on every remote write request with the - configured username and password. - password and password_file are mutually exclusive. + + server_name = mkOpt types.str '' + ServerName extension to indicate the name of the server. + http://tools.ietf.org/html/rfc4366#section-3.1 ''; - bearer_token = mkOpt types.str '' - Sets the `Authorization` header on every remote write request with - the configured bearer token. It is mutually exclusive with `bearer_token_file`. + + insecure_skip_verify = mkOpt types.bool '' + Disable validation of the server certificate. ''; - bearer_token_file = mkOpt types.str '' - Sets the `Authorization` header on every remote write request with the bearer token - read from the configured file. It is mutually exclusive with `bearer_token`. + }; + }; + + promtypes.oauth2 = types.submodule { + options = { + client_id = mkOpt types.str '' + OAuth client ID. ''; - tls_config = mkOpt promTypes.tls_config '' - Configures the remote write request's TLS settings. + + client_secret = mkOpt types.str '' + OAuth client secret. ''; - proxy_url = mkOpt types.str "Optional Proxy URL."; - queue_config = mkOpt (types.submodule { - options = { - capacity = mkOpt types.int '' - Number of samples to buffer per shard before we block reading of more - samples from the WAL. It is recommended to have enough capacity in each - shard to buffer several requests to keep throughput up while processing - occasional slow remote requests. - ''; - max_shards = mkOpt types.int '' - Maximum number of shards, i.e. amount of concurrency. - ''; - min_shards = mkOpt types.int '' - Minimum number of shards, i.e. amount of concurrency. - ''; - max_samples_per_send = mkOpt types.int '' - Maximum number of samples per send. - ''; - batch_send_deadline = mkOpt types.str '' - Maximum time a sample will wait in buffer. - ''; - min_backoff = mkOpt types.str '' - Initial retry delay. Gets doubled for every retry. - ''; - max_backoff = mkOpt types.str '' - Maximum retry delay. - ''; - }; - }) '' - Configures the queue used to write to remote storage. + + client_secret_file = mkOpt types.str '' + Read the client secret from a file. It is mutually exclusive with `client_secret`. ''; - metadata_config = mkOpt (types.submodule { - options = { - send = mkOpt types.bool '' - Whether metric metadata is sent to remote storage or not. - ''; - send_interval = mkOpt types.str '' - How frequently metric metadata is sent to remote storage. - ''; - }; - }) '' - Configures the sending of series metadata to remote storage. - Metadata configuration is subject to change at any point - or be removed in future releases. + + scopes = mkOpt (types.listOf types.str) '' + Scopes for the token request. + ''; + + token_url = mkOpt types.str '' + The URL to fetch the token from. + ''; + + endpoint_params = mkOpt (types.attrsOf types.str) '' + Optional parameters to append to the token URL. ''; }; }; @@ -307,7 +302,7 @@ let by the target will be ignored. ''; - scheme = mkDefOpt (types.enum ["http" "https"]) "http" '' + scheme = mkDefOpt (types.enum [ "http" "https" ]) "http" '' The URL scheme with which to fetch metrics from targets. ''; @@ -315,18 +310,7 @@ let Optional HTTP URL parameters. ''; - basic_auth = mkOpt (types.submodule { - options = { - username = mkOption { - type = types.str; - description = '' - HTTP username - ''; - }; - password = mkOpt types.str "HTTP password"; - password_file = mkOpt types.str "HTTP password file"; - }; - }) '' + basic_auth = mkOpt promTypes.basic_auth '' Sets the `Authorization` header on every scrape request with the configured username and password. password and password_file are mutually exclusive. @@ -352,16 +336,36 @@ let Optional proxy URL. ''; - ec2_sd_configs = mkOpt (types.listOf promTypes.ec2_sd_config) '' - List of EC2 service discovery configurations. + azure_sd_configs = mkOpt (types.listOf promTypes.azure_sd_config) '' + List of Azure service discovery configurations. + ''; + + consul_sd_configs = mkOpt (types.listOf promTypes.consul_sd_config) '' + List of Consul service discovery configurations. + ''; + + digitalocean_sd_configs = mkOpt (types.listOf promTypes.digitalocean_sd_config) '' + List of DigitalOcean service discovery configurations. + ''; + + docker_sd_configs = mkOpt (types.listOf promTypes.docker_sd_config) '' + List of Docker service discovery configurations. + ''; + + dockerswarm_sd_configs = mkOpt (types.listOf promTypes.dockerswarm_sd_config) '' + List of Docker Swarm service discovery configurations. ''; dns_sd_configs = mkOpt (types.listOf promTypes.dns_sd_config) '' List of DNS service discovery configurations. ''; - consul_sd_configs = mkOpt (types.listOf promTypes.consul_sd_config) '' - List of Consul service discovery configurations. + ec2_sd_configs = mkOpt (types.listOf promTypes.ec2_sd_config) '' + List of EC2 service discovery configurations. + ''; + + eureka_sd_configs = mkOpt (types.listOf promTypes.eureka_sd_config) '' + List of Eureka service discovery configurations. ''; file_sd_configs = mkOpt (types.listOf promTypes.file_sd_config) '' @@ -376,6 +380,62 @@ let relevant Prometheus configuration docs for more detail. ''; + hetzner_sd_configs = mkOpt (types.listOf promTypes.hetzner_sd_config) '' + List of Hetzner service discovery configurations. + ''; + + http_sd_configs = mkOpt (types.listOf promTypes.http_sd_config) '' + List of HTTP service discovery configurations. + ''; + + kubernetes_sd_configs = mkOpt (types.listOf promTypes.kubernetes_sd_config) '' + List of Kubernetes service discovery configurations. + ''; + + kuma_sd_configs = mkOpt (types.listOf promTypes.kuma_sd_config) '' + List of Kuma service discovery configurations. + ''; + + lightsail_sd_configs = mkOpt (types.listOf promTypes.lightsail_sd_config) '' + List of Lightsail service discovery configurations. + ''; + + linode_sd_configs = mkOpt (types.listOf promTypes.linode_sd_config) '' + List of Linode service discovery configurations. + ''; + + marathon_sd_configs = mkOpt (types.listOf promTypes.marathon_sd_config) '' + List of Marathon service discovery configurations. + ''; + + nerve_sd_configs = mkOpt (types.listOf promTypes.nerve_sd_config) '' + List of AirBnB's Nerve service discovery configurations. + ''; + + openstack_sd_configs = mkOpt (types.listOf promTypes.openstack_sd_config) '' + List of OpenStack service discovery configurations. + ''; + + puppetdb_sd_configs = mkOpt (types.listOf promTypes.puppetdb_sd_config) '' + List of PuppetDB service discovery configurations. + ''; + + scaleway_sd_configs = mkOpt (types.listOf promTypes.scaleway_sd_config) '' + List of Scaleway service discovery configurations. + ''; + + serverset_sd_configs = mkOpt (types.listOf promTypes.serverset_sd_config) '' + List of Zookeeper Serverset service discovery configurations. + ''; + + triton_sd_configs = mkOpt (types.listOf promTypes.triton_sd_config) '' + List of Triton Serverset service discovery configurations. + ''; + + uyuni_sd_configs = mkOpt (types.listOf promTypes.uyuni_sd_config) '' + List of Uyuni Serverset service discovery configurations. + ''; + static_configs = mkOpt (types.listOf promTypes.static_config) '' List of labeled target groups for this job. ''; @@ -388,29 +448,245 @@ let List of metric relabel configurations. ''; + body_size_limit = mkDefOpt types.str "0" '' + An uncompressed response body larger than this many bytes will cause the + scrape to fail. 0 means no limit. Example: 100MB. + This is an experimental feature, this behaviour could + change or be removed in the future. + ''; + sample_limit = mkDefOpt types.int "0" '' Per-scrape limit on number of scraped samples that will be accepted. If more than this number of samples are present after metric relabelling the entire scrape will be treated as failed. 0 means no limit. ''; + + label_limit = mkDefOpt types.int "0" '' + Per-scrape limit on number of labels that will be accepted for a sample. If + more than this number of labels are present post metric-relabeling, the + entire scrape will be treated as failed. 0 means no limit. + ''; + + label_name_length_limit = mkDefOpt types.int "0" '' + Per-scrape limit on length of labels name that will be accepted for a sample. + If a label name is longer than this number post metric-relabeling, the entire + scrape will be treated as failed. 0 means no limit. + ''; + + label_value_length_limit = mkDefOpt types.int "0" '' + Per-scrape limit on length of labels value that will be accepted for a sample. + If a label value is longer than this number post metric-relabeling, the + entire scrape will be treated as failed. 0 means no limit. + ''; + + target_limit = mkDefOpt types.int "0" '' + Per-scrape config limit on number of unique targets that will be + accepted. If more than this number of targets are present after target + relabeling, Prometheus will mark the targets as failed without scraping them. + 0 means no limit. This is an experimental feature, this behaviour could + change in the future. + ''; }; }; - promTypes.static_config = types.submodule { + # + # Config types: service discovery + # + + # For this one, the docs actually define all types needed to use mkSdConfigModule, but a bunch + # of them are marked with 'currently not support by Azure' so we don't bother adding them in + # here. + promTypes.azure_sd_config = types.submodule { options = { - targets = mkOption { + environment = mkDefOpt types.str "AzurePublicCloud" '' + The Azure environment. + ''; + + authentication_method = mkDefOpt (types.enum [ "OAuth" "ManagedIdentity" ]) "OAuth" '' + The authentication method, either OAuth or ManagedIdentity. + See https://docs.microsoft.com/en-us/azure/active-directory/managed-identities-azure-resources/overview + ''; + + subscription_id = mkOption { + type = types.str; + description = '' + The subscription ID. + ''; + }; + + tenant_id = mkOpt types.str '' + Optional tenant ID. Only required with authentication_method OAuth. + ''; + + client_id = mkOpt types.str '' + Optional client ID. Only required with authentication_method OAuth. + ''; + + client_secret = mkOpt types.str '' + Optional client secret. Only required with authentication_method OAuth. + ''; + + refresh_interval = mkDefOpt types.str "300s" '' + Refresh interval to re-read the instance list. + ''; + + port = mkDefOpt types.int "80" '' + The port to scrape metrics from. If using the public IP + address, this must instead be specified in the relabeling + rule. + ''; + + proxy_url = mkOpt types.str '' + Optional proxy URL. + ''; + + follow_redirects = mkDefOpt types.bool "true" '' + Configure whether HTTP requests follow HTTP 3xx redirects. + ''; + + tls_config = mkOpt promTypes.tls_config '' + TLS configuration. + ''; + }; + }; + + promTypes.consul_sd_config = mkSdConfigModule { + server = mkDefOpt types.str "localhost:8500" '' + Consul server to query. + ''; + + token = mkOpt types.str "Consul token"; + + datacenter = mkOpt types.str "Consul datacenter"; + + scheme = mkDefOpt types.str "http" "Consul scheme"; + + username = mkOpt types.str "Consul username"; + + password = mkOpt types.str "Consul password"; + + tls_config = mkOpt promTypes.tls_config '' + Configures the Consul request's TLS settings. + ''; + + services = mkOpt (types.listOf types.str) '' + A list of services for which targets are retrieved. + ''; + + tags = mkOpt (types.listOf types.str) '' + An optional list of tags used to filter nodes for a given + service. Services must contain all tags in the list. + ''; + + node_meta = mkOpt (types.attrsOf types.str) '' + Node metadata used to filter nodes for a given service. + ''; + + tag_separator = mkDefOpt types.str "," '' + The string by which Consul tags are joined into the tag label. + ''; + + allow_stale = mkOpt types.bool '' + Allow stale Consul results + (see ). + + Will reduce load on Consul. + ''; + + refresh_interval = mkDefOpt types.str "30s" '' + The time after which the provided names are refreshed. + + On large setup it might be a good idea to increase this value + because the catalog will change all the time. + ''; + }; + + promTypes.digitalocean_sd_config = mkSdConfigModule { + port = mkDefOpt types.int "80" '' + The port to scrape metrics from. + ''; + + refresh_interval = mkDefOpt types.str "60s" '' + The time after which the droplets are refreshed. + ''; + }; + + mkDockerSdConfigModule = extraOptions: mkSdConfigModule ({ + host = mkOption { + type = types.str; + description = '' + Address of the Docker daemon. + ''; + }; + + port = mkDefOpt types.int "80" '' + The port to scrape metrics from, when `role` is nodes, and for discovered + tasks and services that don't have published ports. + ''; + + filters = mkOpt + (types.listOf (types.submodule { + options = { + name = mkOption { + type = types.str; + description = '' + Name of the filter. The available filters are listed in the upstream documentation: + Services: + Tasks: + Nodes: + ''; + }; + values = mkOption { + type = types.str; + description = '' + Value for the filter. + ''; + }; + }; + })) '' + Optional filters to limit the discovery process to a subset of available resources. + ''; + + refresh_interval = mkDefOpt types.str "60s" '' + The time after which the containers are refreshed. + ''; + } // extraOptions); + + promTypes.docker_sd_config = mkDockerSdConfigModule { + host_networking_host = mkDefOpt types.str "localhost" '' + The host to use if the container is in host networking mode. + ''; + }; + + promTypes.dockerswarm_sd_config = mkDockerSdConfigModule { + role = mkOption { + type = types.enum [ "services" "tasks" "nodes" ]; + description = '' + Role of the targets to retrieve. Must be `services`, `tasks`, or `nodes`. + ''; + }; + }; + + promTypes.dns_sd_config = types.submodule { + options = { + names = mkOption { type = types.listOf types.str; description = '' - The targets specified by the target group. - ''; - }; - labels = mkOption { - type = types.attrsOf types.str; - default = {}; - description = '' - Labels assigned to all metrics scraped from the targets. + A list of DNS SRV record names to be queried. ''; }; + + type = mkDefOpt (types.enum [ "SRV" "A" "AAAA" ]) "SRV" '' + The type of DNS query to perform. One of SRV, A, or AAAA. + ''; + + port = mkOpt types.int '' + The port number used if the query type is not SRV. + ''; + + refresh_interval = mkDefOpt types.str "30s" '' + The time after which the provided names are refreshed. + ''; }; }; @@ -419,7 +695,7 @@ let region = mkOption { type = types.str; description = '' - The AWS Region. + The AWS Region. If blank, the region from the instance metadata is used. ''; }; endpoint = mkOpt types.str '' @@ -436,7 +712,7 @@ let AWS_SECRET_ACCESS_KEY is used. ''; - profile = mkOpt types.str '' + profile = mkOpt types.str '' Named AWS profile used to connect to the API. ''; @@ -454,96 +730,36 @@ let rule. ''; - filters = mkOpt (types.listOf promTypes.filter) '' + filters = mkOpt + (types.listOf (types.submodule { + options = { + name = mkOption { + type = types.str; + description = '' + See this list + for the available filters. + ''; + }; + + values = mkOption { + type = types.listOf types.str; + default = [ ]; + description = '' + Value of the filter. + ''; + }; + }; + })) '' Filters can be used optionally to filter the instance list by other criteria. ''; }; }; - promTypes.filter = types.submodule { - options = { - name = mkOption { - type = types.str; - description = '' - See this list - for the available filters. - ''; - }; - - values = mkOption { - type = types.listOf types.str; - default = []; - description = '' - Value of the filter. - ''; - }; - }; - }; - - promTypes.dns_sd_config = types.submodule { - options = { - names = mkOption { - type = types.listOf types.str; - description = '' - A list of DNS SRV record names to be queried. - ''; - }; - - refresh_interval = mkDefOpt types.str "30s" '' - The time after which the provided names are refreshed. - ''; - }; - }; - - promTypes.consul_sd_config = types.submodule { - options = { - server = mkDefOpt types.str "localhost:8500" '' - Consul server to query. - ''; - - token = mkOpt types.str "Consul token"; - - datacenter = mkOpt types.str "Consul datacenter"; - - scheme = mkDefOpt types.str "http" "Consul scheme"; - - username = mkOpt types.str "Consul username"; - - password = mkOpt types.str "Consul password"; - - tls_config = mkOpt promTypes.tls_config '' - Configures the Consul request's TLS settings. - ''; - - services = mkOpt (types.listOf types.str) '' - A list of services for which targets are retrieved. - ''; - - tags = mkOpt (types.listOf types.str) '' - An optional list of tags used to filter nodes for a given - service. Services must contain all tags in the list. - ''; - - node_meta = mkOpt (types.attrsOf types.str) '' - Node metadata used to filter nodes for a given service. - ''; - - tag_separator = mkDefOpt types.str "," '' - The string by which Consul tags are joined into the tag label. - ''; - - allow_stale = mkOpt types.bool '' - Allow stale Consul results - (see ). - - Will reduce load on Consul. - ''; - - refresh_interval = mkDefOpt types.str "30s" '' - The time after which the provided names are refreshed. - - On large setup it might be a good idea to increase this value - because the catalog will change all the time. + promTypes.eureka_sd_config = mkSdConfigModule { + server = mkOption { + type = types.str; + description = '' + The URL to connect to the Eureka server. ''; }; }; @@ -604,13 +820,563 @@ let tag_separator = mkDefOpt types.str "," '' The tag separator used to separate concatenated GCE instance network tags. - See the GCP documentation on network tags for more information: + See the GCP documentation on network tags for more information: + ''; }; }; + promTypes.hetzner_sd_config = mkSdConfigModule { + role = mkOption { + type = types.enum [ "robot" "hcloud" ]; + description = '' + The Hetzner role of entities that should be discovered. + One of robot or hcloud. + ''; + }; + + port = mkDefOpt types.int "80" '' + The port to scrape metrics from. + ''; + + refresh_interval = mkDefOpt types.str "60s" '' + The time after which the servers are refreshed. + ''; + }; + + promTypes.http_sd_config = types.submodule { + options = { + url = mkOption { + type = types.str; + description = '' + URL from which the targets are fetched. + ''; + }; + + refresh_interval = mkDefOpt types.str "60s" '' + Refresh interval to re-query the endpoint. + ''; + + basic_auth = mkOpt promTypes.basic_auth '' + Authentication information used to authenticate to the API server. + password and password_file are mutually exclusive. + ''; + + proxy_url = mkOpt types.str '' + Optional proxy URL. + ''; + + follow_redirects = mkDefOpt types.bool "true" '' + Configure whether HTTP requests follow HTTP 3xx redirects. + ''; + + tls_config = mkOpt promTypes.tls_config '' + Configures the scrape request's TLS settings. + ''; + }; + }; + + promTypes.kubernetes_sd_config = mkSdConfigModule { + api_server = mkOpt types.str '' + The API server addresses. If left empty, Prometheus is assumed to run inside + of the cluster and will discover API servers automatically and use the pod's + CA certificate and bearer token file at /var/run/secrets/kubernetes.io/serviceaccount/. + ''; + + role = mkOption { + type = types.enum [ "endpoints" "service" "pod" "node" "ingress" ]; + description = '' + The Kubernetes role of entities that should be discovered. + One of endpoints, service, pod, node, or ingress. + ''; + }; + + kubeconfig_file = mkOpt types.str '' + Optional path to a kubeconfig file. + Note that api_server and kube_config are mutually exclusive. + ''; + + namespaces = mkOpt + ( + types.submodule { + options = { + names = mkOpt (types.listOf types.str) '' + Namespace name. + ''; + }; + } + ) '' + Optional namespace discovery. If omitted, all namespaces are used. + ''; + + selectors = mkOpt + ( + types.listOf ( + types.submodule { + options = { + role = mkOption { + type = types.str; + description = '' + Selector role + ''; + }; + + label = mkOpt types.str '' + Selector label + ''; + + field = mkOpt types.str '' + Selector field + ''; + }; + } + ) + ) '' + Optional label and field selectors to limit the discovery process to a subset of available resources. + See https://kubernetes.io/docs/concepts/overview/working-with-objects/field-selectors/ + and https://kubernetes.io/docs/concepts/overview/working-with-objects/labels/ to learn more about the possible + filters that can be used. Endpoints role supports pod, service and endpoints selectors, other roles + only support selectors matching the role itself (e.g. node role can only contain node selectors). + + Note: When making decision about using field/label selector make sure that this + is the best approach - it will prevent Prometheus from reusing single list/watch + for all scrape configs. This might result in a bigger load on the Kubernetes API, + because per each selector combination there will be additional LIST/WATCH. On the other hand, + if you just want to monitor small subset of pods in large cluster it's recommended to use selectors. + Decision, if selectors should be used or not depends on the particular situation. + ''; + }; + + promTypes.kuma_sd_config = mkSdConfigModule { + server = mkOption { + type = types.str; + description = '' + Address of the Kuma Control Plane's MADS xDS server. + ''; + }; + + refresh_interval = mkDefOpt types.str "30s" '' + The time to wait between polling update requests. + ''; + + fetch_timeout = mkDefOpt types.str "2m" '' + The time after which the monitoring assignments are refreshed. + ''; + }; + + promTypes.lightsail_sd_config = types.submodule { + options = { + region = mkOpt types.str '' + The AWS region. If blank, the region from the instance metadata is used. + ''; + + endpoint = mkOpt types.str '' + Custom endpoint to be used. + ''; + + access_key = mkOpt types.str '' + The AWS API keys. If blank, the environment variable AWS_ACCESS_KEY_ID is used. + ''; + + secret_key = mkOpt types.str '' + The AWS API keys. If blank, the environment variable AWS_SECRET_ACCESS_KEY is used. + ''; + + profile = mkOpt types.str '' + Named AWS profile used to connect to the API. + ''; + + role_arn = mkOpt types.str '' + AWS Role ARN, an alternative to using AWS API keys. + ''; + + refresh_interval = mkDefOpt types.str "60s" '' + Refresh interval to re-read the instance list. + ''; + + port = mkDefOpt types.int "80" '' + The port to scrape metrics from. If using the public IP address, this must + instead be specified in the relabeling rule. + ''; + }; + }; + + promTypes.linode_sd_config = mkSdConfigModule { + port = mkDefOpt types.int "80" '' + The port to scrape metrics from. + ''; + + tag_separator = mkDefOpt types.str "," '' + The string by which Linode Instance tags are joined into the tag label. + ''; + + refresh_interval = mkDefOpt types.str "60s" '' + The time after which the linode instances are refreshed. + ''; + }; + + promTypes.marathon_sd_config = mkSdConfigModule { + servers = mkOption { + type = types.listOf types.str; + description = '' + List of URLs to be used to contact Marathon servers. You need to provide at least one server URL. + ''; + }; + + refresh_interval = mkDefOpt types.str "30s" '' + Polling interval. + ''; + + auth_token = mkOpt types.str '' + Optional authentication information for token-based authentication: + + It is mutually exclusive with auth_token_file and other authentication mechanisms. + ''; + + auth_token_file = mkOpt types.str '' + Optional authentication information for token-based authentication: + + It is mutually exclusive with auth_token and other authentication mechanisms. + ''; + }; + + promTypes.nerve_sd_config = types.submodule { + options = { + servers = mkOption { + type = types.listOf types.str; + description = '' + The Zookeeper servers. + ''; + }; + + paths = mkOption { + type = types.listOf types.str; + description = '' + Paths can point to a single service, or the root of a tree of services. + ''; + }; + + timeout = mkDefOpt types.str "10s" '' + Timeout value. + ''; + }; + }; + + promTypes.openstack_sd_config = types.submodule { + options = + let + userDescription = '' + username is required if using Identity V2 API. Consult with your provider's + control panel to discover your account's username. In Identity V3, either + userid or a combination of username and domain_id or domain_name are needed. + ''; + + domainDescription = '' + At most one of domain_id and domain_name must be provided if using username + with Identity V3. Otherwise, either are optional. + ''; + + projectDescription = '' + The project_id and project_name fields are optional for the Identity V2 API. + Some providers allow you to specify a project_name instead of the project_id. + Some require both. Your provider's authentication policies will determine + how these fields influence authentication. + ''; + + applicationDescription = '' + The application_credential_id or application_credential_name fields are + required if using an application credential to authenticate. Some providers + allow you to create an application credential to authenticate rather than a + password. + ''; + in + { + role = mkOption { + type = types.str; + description = '' + The OpenStack role of entities that should be discovered. + ''; + }; + + region = mkOption { + type = types.str; + description = '' + The OpenStack Region. + ''; + }; + + identity_endpoint = mkOpt types.str '' + identity_endpoint specifies the HTTP endpoint that is required to work with + the Identity API of the appropriate version. While it's ultimately needed by + all of the identity services, it will often be populated by a provider-level + function. + ''; + + username = mkOpt types.str userDescription; + userid = mkOpt types.str userDescription; + + password = mkOpt types.str '' + password for the Identity V2 and V3 APIs. Consult with your provider's + control panel to discover your account's preferred method of authentication. + ''; + + domain_name = mkOpt types.str domainDescription; + domain_id = mkOpt types.str domainDescription; + + project_name = mkOpt types.str projectDescription; + project_id = mkOpt types.str projectDescription; + + application_credential_name = mkOpt types.str applicationDescription; + application_credential_id = mkOpt types.str applicationDescription; + + application_credential_secret = mkOpt types.str '' + The application_credential_secret field is required if using an application + credential to authenticate. + ''; + + all_tenants = mkDefOpt types.bool "false" '' + Whether the service discovery should list all instances for all projects. + It is only relevant for the 'instance' role and usually requires admin permissions. + ''; + + refresh_interval = mkDefOpt types.str "60s" '' + Refresh interval to re-read the instance list. + ''; + + port = mkDefOpt types.int "80" '' + The port to scrape metrics from. If using the public IP address, this must + instead be specified in the relabeling rule. + ''; + + availability = mkDefOpt (types.enum [ "public" "admin" "internal" ]) "public" '' + The availability of the endpoint to connect to. Must be one of public, admin or internal. + ''; + + tls_config = mkOpt promTypes.tls_config '' + TLS configuration. + ''; + }; + }; + + promTypes.puppetdb_sd_config = mkSdConfigModule { + url = mkOption { + type = types.str; + description = '' + The URL of the PuppetDB root query endpoint. + ''; + }; + + query = mkOption { + type = types.str; + description = '' + Puppet Query Language (PQL) query. Only resources are supported. + https://puppet.com/docs/puppetdb/latest/api/query/v4/pql.html + ''; + }; + + include_parameters = mkDefOpt types.bool "false" '' + Whether to include the parameters as meta labels. + Due to the differences between parameter types and Prometheus labels, + some parameters might not be rendered. The format of the parameters might + also change in future releases. + + Note: Enabling this exposes parameters in the Prometheus UI and API. Make sure + that you don't have secrets exposed as parameters if you enable this. + ''; + + refresh_interval = mkDefOpt types.str "60s" '' + Refresh interval to re-read the resources list. + ''; + + port = mkDefOpt types.int "80" '' + The port to scrape metrics from. + ''; + }; + + promTypes.scaleway_sd_config = types.submodule { + options = { + access_key = mkOption { + type = types.str; + description = '' + Access key to use. https://console.scaleway.com/project/credentials + ''; + }; + + secret_key = mkOpt types.str '' + Secret key to use when listing targets. https://console.scaleway.com/project/credentials + It is mutually exclusive with `secret_key_file`. + ''; + + secret_key_file = mkOpt types.str '' + Sets the secret key with the credentials read from the configured file. + It is mutually exclusive with `secret_key`. + ''; + + project_id = mkOption { + type = types.str; + description = '' + Project ID of the targets. + ''; + }; + + role = mkOption { + type = types.enum [ "instance" "baremetal" ]; + description = '' + Role of the targets to retrieve. Must be `instance` or `baremetal`. + ''; + }; + + port = mkDefOpt types.int "80" '' + The port to scrape metrics from. + ''; + + api_url = mkDefOpt types.str "https://api.scaleway.com" '' + API URL to use when doing the server listing requests. + ''; + + zone = mkDefOpt types.str "fr-par-1" '' + Zone is the availability zone of your targets (e.g. fr-par-1). + ''; + + name_filter = mkOpt types.str '' + Specify a name filter (works as a LIKE) to apply on the server listing request. + ''; + + tags_filter = mkOpt (types.listOf types.str) '' + Specify a tag filter (a server needs to have all defined tags to be listed) to apply on the server listing request. + ''; + + refresh_interval = mkDefOpt types.str "60s" '' + Refresh interval to re-read the managed targets list. + ''; + + proxy_url = mkOpt types.str '' + Optional proxy URL. + ''; + + follow_redirects = mkDefOpt types.bool "true" '' + Configure whether HTTP requests follow HTTP 3xx redirects. + ''; + + tls_config = mkOpt promTypes.tls_config '' + TLS configuration. + ''; + }; + }; + + # These are exactly the same. + promTypes.serverset_sd_config = promTypes.nerve_sd_config; + + promTypes.triton_sd_config = types.submodule { + options = { + account = mkOption { + type = types.str; + description = '' + The account to use for discovering new targets. + ''; + }; + + role = mkDefOpt (types.enum [ "container" "cn" ]) "container" '' + The type of targets to discover, can be set to: + - "container" to discover virtual machines (SmartOS zones, lx/KVM/bhyve branded zones) running on Triton + - "cn" to discover compute nodes (servers/global zones) making up the Triton infrastructure + ''; + + dns_suffix = mkOption { + type = types.str; + description = '' + The DNS suffix which should be applied to target. + ''; + }; + + endpoint = mkOption { + type = types.str; + description = '' + The Triton discovery endpoint (e.g. cmon.us-east-3b.triton.zone). This is + often the same value as dns_suffix. + ''; + }; + + groups = mkOpt (types.listOf types.str) '' + A list of groups for which targets are retrieved, only supported when targeting the container role. + If omitted all containers owned by the requesting account are scraped. + ''; + + port = mkDefOpt types.int "9163" '' + The port to use for discovery and metric scraping. + ''; + + refresh_interval = mkDefOpt types.str "60s" '' + The interval which should be used for refreshing targets. + ''; + + version = mkDefOpt types.int "1" '' + The Triton discovery API version. + ''; + + tls_config = mkOpt promTypes.tls_config '' + TLS configuration. + ''; + }; + }; + + promTypes.uyuni_sd_config = mkSdConfigModule { + server = mkOption { + type = types.str; + description = '' + The URL to connect to the Uyuni server. + ''; + }; + + username = mkOption { + type = types.str; + description = '' + Credentials are used to authenticate the requests to Uyuni API. + ''; + }; + + password = mkOption { + type = types.str; + description = '' + Credentials are used to authenticate the requests to Uyuni API. + ''; + }; + + entitlement = mkDefOpt types.str "monitoring_entitled" '' + The entitlement string to filter eligible systems. + ''; + + separator = mkDefOpt types.str "," '' + The string by which Uyuni group names are joined into the groups label + ''; + + refresh_interval = mkDefOpt types.str "60s" '' + Refresh interval to re-read the managed targets list. + ''; + }; + + promTypes.static_config = types.submodule { + options = { + targets = mkOption { + type = types.listOf types.str; + description = '' + The targets specified by the target group. + ''; + }; + labels = mkOption { + type = types.attrsOf types.str; + default = { }; + description = '' + Labels assigned to all metrics scraped from the targets. + ''; + }; + }; + }; + + # + # Config types: relabling + # + promTypes.relabel_config = types.submodule { options = { source_labels = mkOpt (types.listOf types.str) '' @@ -642,41 +1408,154 @@ let ''; action = - mkDefOpt (types.enum ["replace" "keep" "drop" "hashmod" "labelmap" "labeldrop" "labelkeep"]) "replace" '' - Action to perform based on regex matching. - ''; + mkDefOpt (types.enum [ "replace" "keep" "drop" "hashmod" "labelmap" "labeldrop" "labelkeep" ]) "replace" '' + Action to perform based on regex matching. + ''; }; }; - promTypes.tls_config = types.submodule { + # + # Config types : remote read / write + # + + promTypes.remote_write = types.submodule { options = { - ca_file = mkOpt types.str '' - CA certificate to validate API server certificate with. + url = mkOption { + type = types.str; + description = '' + ServerName extension to indicate the name of the server. + http://tools.ietf.org/html/rfc4366#section-3.1 + ''; + }; + remote_timeout = mkOpt types.str '' + Timeout for requests to the remote write endpoint. ''; - - cert_file = mkOpt types.str '' - Certificate file for client cert authentication to the server. + write_relabel_configs = mkOpt (types.listOf promTypes.relabel_config) '' + List of remote write relabel configurations. ''; - - key_file = mkOpt types.str '' - Key file for client cert authentication to the server. + name = mkOpt types.str '' + Name of the remote write config, which if specified must be unique among remote write configs. + The name will be used in metrics and logging in place of a generated value to help users distinguish between + remote write configs. ''; - - server_name = mkOpt types.str '' - ServerName extension to indicate the name of the server. - http://tools.ietf.org/html/rfc4366#section-3.1 + basic_auth = mkOpt promTypes.basic_auth '' + Sets the `Authorization` header on every remote write request with the + configured username and password. + password and password_file are mutually exclusive. ''; - - insecure_skip_verify = mkOpt types.bool '' - Disable validation of the server certificate. + bearer_token = mkOpt types.str '' + Sets the `Authorization` header on every remote write request with + the configured bearer token. It is mutually exclusive with `bearer_token_file`. + ''; + bearer_token_file = mkOpt types.str '' + Sets the `Authorization` header on every remote write request with the bearer token + read from the configured file. It is mutually exclusive with `bearer_token`. + ''; + tls_config = mkOpt promTypes.tls_config '' + Configures the remote write request's TLS settings. + ''; + proxy_url = mkOpt types.str "Optional Proxy URL."; + queue_config = mkOpt + (types.submodule { + options = { + capacity = mkOpt types.int '' + Number of samples to buffer per shard before we block reading of more + samples from the WAL. It is recommended to have enough capacity in each + shard to buffer several requests to keep throughput up while processing + occasional slow remote requests. + ''; + max_shards = mkOpt types.int '' + Maximum number of shards, i.e. amount of concurrency. + ''; + min_shards = mkOpt types.int '' + Minimum number of shards, i.e. amount of concurrency. + ''; + max_samples_per_send = mkOpt types.int '' + Maximum number of samples per send. + ''; + batch_send_deadline = mkOpt types.str '' + Maximum time a sample will wait in buffer. + ''; + min_backoff = mkOpt types.str '' + Initial retry delay. Gets doubled for every retry. + ''; + max_backoff = mkOpt types.str '' + Maximum retry delay. + ''; + }; + }) '' + Configures the queue used to write to remote storage. + ''; + metadata_config = mkOpt + (types.submodule { + options = { + send = mkOpt types.bool '' + Whether metric metadata is sent to remote storage or not. + ''; + send_interval = mkOpt types.str '' + How frequently metric metadata is sent to remote storage. + ''; + }; + }) '' + Configures the sending of series metadata to remote storage. + Metadata configuration is subject to change at any point + or be removed in future releases. ''; }; }; -in { + promTypes.remote_read = types.submodule { + options = { + url = mkOption { + type = types.str; + description = '' + ServerName extension to indicate the name of the server. + http://tools.ietf.org/html/rfc4366#section-3.1 + ''; + }; + name = mkOpt types.str '' + Name of the remote read config, which if specified must be unique among remote read configs. + The name will be used in metrics and logging in place of a generated value to help users distinguish between + remote read configs. + ''; + required_matchers = mkOpt (types.attrsOf types.str) '' + An optional list of equality matchers which have to be + present in a selector to query the remote read endpoint. + ''; + remote_timeout = mkOpt types.str '' + Timeout for requests to the remote read endpoint. + ''; + read_recent = mkOpt types.bool '' + Whether reads should be made for queries for time ranges that + the local storage should have complete data for. + ''; + basic_auth = mkOpt promTypes.basic_auth '' + Sets the `Authorization` header on every remote read request with the + configured username and password. + password and password_file are mutually exclusive. + ''; + bearer_token = mkOpt types.str '' + Sets the `Authorization` header on every remote read request with + the configured bearer token. It is mutually exclusive with `bearer_token_file`. + ''; + bearer_token_file = mkOpt types.str '' + Sets the `Authorization` header on every remote read request with the bearer token + read from the configured file. It is mutually exclusive with `bearer_token`. + ''; + tls_config = mkOpt promTypes.tls_config '' + Configures the remote read request's TLS settings. + ''; + proxy_url = mkOpt types.str "Optional Proxy URL."; + }; + }; + +in +{ imports = [ (mkRenamedOptionModule [ "services" "prometheus2" ] [ "services" "prometheus" ]) + (mkRemovedOptionModule [ "services" "prometheus" "environmentFile" ] + "It has been removed since it was causing issues (https://github.com/NixOS/nixpkgs/issues/126083) and Prometheus now has native support for secret files, i.e. `basic_auth.password_file` and `authorization.credentials_file`.") ]; options.services.prometheus = { @@ -725,48 +1604,22 @@ in { extraFlags = mkOption { type = types.listOf types.str; - default = []; + default = [ ]; description = '' Extra commandline options when launching Prometheus. ''; }; - environmentFile = mkOption { - type = types.nullOr types.path; - default = null; - example = "/root/prometheus.env"; + enableReload = mkOption { + default = false; + type = types.bool; description = '' - Environment file as defined in - systemd.exec5 - . + Reload prometheus when configuration file changes (instead of restart). - Secrets may be passed to the service without adding them to the - world-readable Nix store, by specifying placeholder variables as - the option value in Nix and setting these variables accordingly in the - environment file. - - Environment variables from this file will be interpolated into the - config file using envsubst with this syntax: - $ENVIRONMENT ''${VARIABLE} - - - # Example scrape config entry handling an OAuth bearer token - { - job_name = "home_assistant"; - metrics_path = "/api/prometheus"; - scheme = "https"; - bearer_token = "\''${HOME_ASSISTANT_BEARER_TOKEN}"; - [...] - } - - - - # Content of the environment file - HOME_ASSISTANT_BEARER_TOKEN=someoauthbearertoken - - - Note that this file needs to be available on the host on which - Prometheus is running. + The following property holds: switching to a configuration + (switch-to-configuration) that changes the prometheus + configuration only finishes successully when prometheus has finished + loading the new configuration. ''; }; @@ -782,7 +1635,7 @@ in { globalConfig = mkOption { type = promTypes.globalConfig; - default = {}; + default = { }; description = '' Parameters that are valid in all configuration contexts. They also serve as defaults for other configuration sections @@ -791,7 +1644,7 @@ in { remoteRead = mkOption { type = types.listOf promTypes.remote_read; - default = []; + default = [ ]; description = '' Parameters of the endpoints to query from. See the official documentation for more information. @@ -800,7 +1653,7 @@ in { remoteWrite = mkOption { type = types.listOf promTypes.remote_write; - default = []; + default = [ ]; description = '' Parameters of the endpoints to send samples to. See the official documentation for more information. @@ -809,7 +1662,7 @@ in { rules = mkOption { type = types.listOf types.str; - default = []; + default = [ ]; description = '' Alerting and/or Recording rules to evaluate at runtime. ''; @@ -817,7 +1670,7 @@ in { ruleFiles = mkOption { type = types.listOf types.path; - default = []; + default = [ ]; description = '' Any additional rules files to include in this configuration. ''; @@ -825,7 +1678,7 @@ in { scrapeConfigs = mkOption { type = types.listOf promTypes.scrape_config; - default = []; + default = [ ]; description = '' A list of scrape configurations. ''; @@ -844,7 +1697,7 @@ in { } ]; } ] ''; - default = []; + default = [ ]; description = '' A list of alertmanagers to send alerts to. See the official documentation for more information. @@ -903,11 +1756,13 @@ in { config = mkIf cfg.enable { assertions = [ - ( let + ( + let # Match something with dots (an IPv4 address) or something ending in # a square bracket (an IPv6 addresses) followed by a port number. legacy = builtins.match "(.*\\..*|.*]):([[:digit:]]+)" cfg.listenAddress; - in { + in + { assertion = legacy == null; message = '' Do not specify the port for Prometheus to listen on in the @@ -925,20 +1780,19 @@ in { uid = config.ids.uids.prometheus; group = "prometheus"; }; + environment.etc."prometheus/prometheus.yaml" = mkIf cfg.enableReload { + source = prometheusYml; + }; systemd.services.prometheus = { wantedBy = [ "multi-user.target" ]; - after = [ "network.target" ]; - preStart = '' - ${lib.getBin pkgs.envsubst}/bin/envsubst -o "/run/prometheus/prometheus-substituted.yaml" \ - -i "${prometheusYml}" - ''; + after = [ "network.target" ]; serviceConfig = { ExecStart = "${cfg.package}/bin/prometheus" + optionalString (length cmdlineArgs != 0) (" \\\n " + concatStringsSep " \\\n " cmdlineArgs); + ExecReload = mkIf cfg.enableReload "+${reload}/bin/reload-prometheus"; User = "prometheus"; - Restart = "always"; - EnvironmentFile = mkIf (cfg.environmentFile != null) [ cfg.environmentFile ]; + Restart = "always"; RuntimeDirectory = "prometheus"; RuntimeDirectoryMode = "0700"; WorkingDirectory = workingDir; @@ -946,5 +1800,29 @@ in { StateDirectoryMode = "0700"; }; }; + # prometheus-config-reload will activate after prometheus. However, what we + # don't want is that on startup it immediately reloads prometheus because + # prometheus itself might have just started. + # + # Instead we only want to reload prometheus when the config file has + # changed. So on startup prometheus-config-reload will just output a + # harmless message and then stay active (RemainAfterExit). + # + # Then, when the config file has changed, switch-to-configuration notices + # that this service has changed (restartTriggers) and needs to be reloaded + # (reloadIfChanged). The reload command then reloads prometheus. + systemd.services.prometheus-config-reload = mkIf cfg.enableReload { + wantedBy = [ "prometheus.service" ]; + after = [ "prometheus.service" ]; + reloadIfChanged = true; + restartTriggers = [ prometheusYml ]; + serviceConfig = { + Type = "oneshot"; + RemainAfterExit = true; + TimeoutSec = 60; + ExecStart = "${pkgs.logger}/bin/logger 'prometheus-config-reload will only reload prometheus when reloaded itself.'"; + ExecReload = [ "${triggerReload}/bin/trigger-reload-prometheus" ]; + }; + }; }; } diff --git a/nixos/modules/services/monitoring/unifi-poller.nix b/nixos/modules/services/monitoring/unifi-poller.nix index 81a7b408bcc4..cca4a0e72071 100644 --- a/nixos/modules/services/monitoring/unifi-poller.nix +++ b/nixos/modules/services/monitoring/unifi-poller.nix @@ -6,7 +6,7 @@ let cfg = config.services.unifi-poller; configFile = pkgs.writeText "unifi-poller.json" (generators.toJSON {} { - inherit (cfg) poller influxdb prometheus unifi; + inherit (cfg) poller influxdb loki prometheus unifi; }); in { @@ -118,6 +118,61 @@ in { }; }; + loki = { + url = mkOption { + type = types.str; + default = ""; + description = '' + URL of the Loki host. + ''; + }; + user = mkOption { + type = types.str; + default = ""; + description = '' + Username for Loki. + ''; + }; + pass = mkOption { + type = types.path; + default = pkgs.writeText "unifi-poller-loki-default.password" ""; + defaultText = "unifi-poller-influxdb-default.password"; + description = '' + Path of a file containing the password for Loki. + This file needs to be readable by the unifi-poller user. + ''; + apply = v: "file://${v}"; + }; + verify_ssl = mkOption { + type = types.bool; + default = false; + description = '' + Verify Loki's certificate. + ''; + }; + tenant_id = mkOption { + type = types.str; + default = ""; + description = '' + Tenant ID to use in Loki. + ''; + }; + interval = mkOption { + type = types.str; + default = "2m"; + description = '' + How often the events are polled and pushed to Loki. + ''; + }; + timeout = mkOption { + type = types.str; + default = "10s"; + description = '' + Should be increased in case of timeout errors. + ''; + }; + }; + unifi = let controllerOptions = { user = mkOption { @@ -157,7 +212,28 @@ in { type = types.bool; default = false; description = '' - Collect and save data from the intrusion detection system to influxdb. + Collect and save data from the intrusion detection system to influxdb and Loki. + ''; + }; + save_events = mkOption { + type = types.bool; + default = false; + description = '' + Collect and save data from UniFi events to influxdb and Loki. + ''; + }; + save_alarms = mkOption { + type = types.bool; + default = false; + description = '' + Collect and save data from UniFi alarms to influxdb and Loki. + ''; + }; + save_anomalies = mkOption { + type = types.bool; + default = false; + description = '' + Collect and save data from UniFi anomalies to influxdb and Loki. ''; }; save_dpi = mkOption { diff --git a/nixos/modules/services/networking/antennas.nix b/nixos/modules/services/networking/antennas.nix new file mode 100644 index 000000000000..ef98af22f20f --- /dev/null +++ b/nixos/modules/services/networking/antennas.nix @@ -0,0 +1,80 @@ +{ config, lib, pkgs, ... }: + +with lib; + +let cfg = config.services.antennas; +in + +{ + options = { + services.antennas = { + enable = mkEnableOption "Antennas"; + + tvheadendUrl = mkOption { + type = types.str; + default = "http://localhost:9981"; + description = "URL of Tvheadend."; + }; + + antennasUrl = mkOption { + type = types.str; + default = "http://127.0.0.1:5004"; + description = "URL of Antennas."; + }; + + tunerCount = mkOption { + type = types.int; + default = 6; + description = "Numbers of tuners in tvheadend."; + }; + + deviceUUID = mkOption { + type = types.str; + default = "2f70c0d7-90a3-4429-8275-cbeeee9cd605"; + description = "Device tuner UUID. Change this if you are running multiple instances."; + }; + }; + }; + + config = mkIf cfg.enable { + systemd.services.antennas = { + description = "Antennas HDHomeRun emulator for Tvheadend. "; + wantedBy = [ "multi-user.target" ]; + + # Config + environment = { + TVHEADEND_URL = cfg.tvheadendUrl; + ANTENNAS_URL = cfg.antennasUrl; + TUNER_COUNT = toString cfg.tunerCount; + DEVICE_UUID = cfg.deviceUUID; + }; + + serviceConfig = { + ExecStart = "${pkgs.antennas}/bin/antennas"; + + # Antennas expects all resources like html and config to be relative to it's working directory + WorkingDirectory = "${pkgs.antennas}/libexec/antennas/deps/antennas/"; + + # Hardening + CapabilityBoundingSet = [ "" ]; + DynamicUser = true; + LockPersonality = true; + ProcSubset = "pid"; + PrivateDevices = true; + PrivateUsers = true; + PrivateTmp = true; + ProtectClock = true; + ProtectControlGroups = true; + ProtectHome = true; + ProtectHostname = true; + ProtectKernelLogs = true; + ProtectKernelModules = true; + ProtectKernelTunables = true; + ProtectProc = "invisible"; + ProtectSystem = "strict"; + RestrictNamespaces = true; + RestrictRealtime = true; + }; + }; + }; +} diff --git a/nixos/modules/services/networking/ddclient.nix b/nixos/modules/services/networking/ddclient.nix index 833b0cbcdcf7..fd9c216b0602 100644 --- a/nixos/modules/services/networking/ddclient.nix +++ b/nixos/modules/services/networking/ddclient.nix @@ -28,6 +28,16 @@ let ''; configFile = if (cfg.configFile != null) then cfg.configFile else configFile'; + preStart = '' + install ${configFile} /run/${RuntimeDirectory}/ddclient.conf + ${lib.optionalString (cfg.configFile == null) (if (cfg.passwordFile != null) then '' + password=$(head -n 1 ${cfg.passwordFile}) + sed -i "s/^password=$/password=$password/" /run/${RuntimeDirectory}/ddclient.conf + '' else '' + sed -i '/^password=$/d' /run/${RuntimeDirectory}/ddclient.conf + '')} + ''; + in with lib; @@ -57,6 +67,15 @@ with lib; ''; }; + package = mkOption { + type = package; + default = pkgs.ddclient; + defaultText = "pkgs.ddclient"; + description = '' + The ddclient executable package run by the service. + ''; + }; + domains = mkOption { default = [ "" ]; type = listOf str; @@ -195,20 +214,13 @@ with lib; serviceConfig = { DynamicUser = true; + RuntimeDirectoryMode = "0700"; inherit RuntimeDirectory; inherit StateDirectory; Type = "oneshot"; - ExecStart = "${lib.getBin pkgs.ddclient}/bin/ddclient -file /run/${RuntimeDirectory}/ddclient.conf"; + ExecStartPre = "!${pkgs.writeShellScript "ddclient-prestart" preStart}"; + ExecStart = "${lib.getBin cfg.package}/bin/ddclient -file /run/${RuntimeDirectory}/ddclient.conf"; }; - preStart = '' - install -m 600 ${configFile} /run/${RuntimeDirectory}/ddclient.conf - ${optionalString (cfg.configFile == null) (if (cfg.passwordFile != null) then '' - password=$(head -n 1 ${cfg.passwordFile}) - sed -i "s/^password=$/password=$password/" /run/${RuntimeDirectory}/ddclient.conf - '' else '' - sed -i '/^password=$/d' /run/${RuntimeDirectory}/ddclient.conf - '')} - ''; }; systemd.timers.ddclient = { diff --git a/nixos/modules/services/networking/lxd-image-server.nix b/nixos/modules/services/networking/lxd-image-server.nix new file mode 100644 index 000000000000..5ec6cacffa49 --- /dev/null +++ b/nixos/modules/services/networking/lxd-image-server.nix @@ -0,0 +1,138 @@ +{ config, pkgs, lib, ... }: + +with lib; + +let + cfg = config.services.lxd-image-server; + format = pkgs.formats.toml {}; + + location = "/var/www/simplestreams"; +in +{ + options = { + services.lxd-image-server = { + enable = mkEnableOption "lxd-image-server"; + + group = mkOption { + type = types.str; + description = "Group assigned to the user and the webroot directory."; + default = "nginx"; + example = "www-data"; + }; + + settings = mkOption { + type = format.type; + description = '' + Configuration for lxd-image-server. + + Example see . + ''; + default = {}; + }; + + nginx = { + enable = mkEnableOption "nginx"; + domain = mkOption { + type = types.str; + description = "Domain to use for nginx virtual host."; + example = "images.example.org"; + }; + }; + }; + }; + + config = mkMerge [ + (mkIf (cfg.enable) { + users.users.lxd-image-server = { + isSystemUser = true; + group = cfg.group; + }; + users.groups.${cfg.group} = {}; + + environment.etc."lxd-image-server/config.toml".source = format.generate "config.toml" cfg.settings; + + services.logrotate.paths.lxd-image-server = { + path = "/var/log/lxd-image-server/lxd-image-server.log"; + frequency = "daily"; + keep = 21; + user = "lxd-image-server"; + group = cfg.group; + extraConfig = '' + missingok + compress + delaycompress + copytruncate + notifempty + ''; + }; + + systemd.tmpfiles.rules = [ + "d /var/www/simplestreams 0755 lxd-image-server ${cfg.group}" + ]; + + systemd.services.lxd-image-server = { + wantedBy = [ "multi-user.target" ]; + after = [ "network.target" ]; + + description = "LXD Image Server"; + + script = '' + ${pkgs.lxd-image-server}/bin/lxd-image-server init + ${pkgs.lxd-image-server}/bin/lxd-image-server watch + ''; + + serviceConfig = { + User = "lxd-image-server"; + Group = cfg.group; + DynamicUser = true; + LogsDirectory = "lxd-image-server"; + RuntimeDirectory = "lxd-image-server"; + ExecReload = "${pkgs.lxd-image-server}/bin/lxd-image-server reload"; + ReadWritePaths = [ location ]; + }; + }; + }) + # this is seperate so it can be enabled on mirrored hosts + (mkIf (cfg.nginx.enable) { + # https://github.com/Avature/lxd-image-server/blob/master/resources/nginx/includes/lxd-image-server.pkg.conf + services.nginx.virtualHosts = { + "${cfg.nginx.domain}" = { + forceSSL = true; + enableACME = mkDefault true; + + root = location; + + locations = { + "/streams/v1/" = { + index = "index.json"; + }; + + # Serve json files with content type header application/json + "~ \.json$" = { + extraConfig = '' + add_header Content-Type application/json; + ''; + }; + + "~ \.tar.xz$" = { + extraConfig = '' + add_header Content-Type application/octet-stream; + ''; + }; + + "~ \.tar.gz$" = { + extraConfig = '' + add_header Content-Type application/octet-stream; + ''; + }; + + # Deny access to document root and the images folder + "~ ^/(images/)?$" = { + return = "403"; + }; + }; + }; + }; + }) + ]; +} diff --git a/nixos/modules/services/networking/mosquitto.md b/nixos/modules/services/networking/mosquitto.md new file mode 100644 index 000000000000..5cdb598151e5 --- /dev/null +++ b/nixos/modules/services/networking/mosquitto.md @@ -0,0 +1,102 @@ +# Mosquitto {#module-services-mosquitto} + +Mosquitto is a MQTT broker often used for IoT or home automation data transport. + +## Quickstart {#module-services-mosquitto-quickstart} + +A minimal configuration for Mosquitto is + +```nix +services.mosquitto = { + enable = true; + listeners = [ { + acl = [ "pattern readwrite #" ]; + omitPasswordAuth = true; + settings.allow_anonymous = true; + } ]; +}; +``` + +This will start a broker on port 1883, listening on all interfaces of the machine, allowing +read/write access to all topics to any user without password requirements. + +User authentication can be configured with the `users` key of listeners. A config that gives +full read access to a user `monitor` and restricted write access to a user `service` could look +like + +```nix +services.mosquitto = { + enable = true; + listeners = [ { + users = { + monitor = { + acl = [ "read #" ]; + password = "monitor"; + }; + service = { + acl = [ "write service/#" ]; + password = "service"; + }; + }; + } ]; +}; +``` + +TLS authentication is configured by setting TLS-related options of the listener: + +```nix +services.mosquitto = { + enable = true; + listeners = [ { + port = 8883; # port change is not required, but helpful to avoid mistakes + # ... + settings = { + cafile = "/path/to/mqtt.ca.pem"; + certfile = "/path/to/mqtt.pem"; + keyfile = "/path/to/mqtt.key"; + }; + } ]; +``` + +## Configuration {#module-services-mosquitto-config} + +The Mosquitto configuration has four distinct types of settings: +the global settings of the daemon, listeners, plugins, and bridges. +Bridges and listeners are part of the global configuration, plugins are part of listeners. +Users of the broker are configured as parts of listeners rather than globally, allowing +configurations in which a given user is only allowed to log in to the broker using specific +listeners (eg to configure an admin user with full access to all topics, but restricted to +localhost). + +Almost all options of Mosquitto are available for configuration at their appropriate levels, some +as NixOS options written in camel case, the remainders under `settings` with their exact names in +the Mosquitto config file. The exceptions are `acl_file` (which is always set according to the +`acl` attributes of a listener and its users) and `per_listener_settings` (which is always set to +`true`). + +### Password authentication {#module-services-mosquitto-config-passwords} + +Mosquitto can be run in two modes, with a password file or without. Each listener has its own +password file, and different listeners may use different password files. Password file generation +can be disabled by setting `omitPasswordAuth = true` for a listener; in this case it is necessary +to either set `settings.allow_anonymous = true` to allow all logins, or to configure other +authentication methods like TLS client certificates with `settings.use_identity_as_username = true`. + +The default is to generate a password file for each listener from the users configured to that +listener. Users with no configured password will not be added to the password file and thus +will not be able to use the broker. + +### ACL format {#module-services-mosquitto-config-acl} + +Every listener has a Mosquitto `acl_file` attached to it. This ACL is configured via two +attributes of the config: + + * the `acl` attribute of the listener configures pattern ACL entries and topic ACL entries + for anonymous users. Each entry must be prefixed with `pattern` or `topic` to distinguish + between these two cases. + * the `acl` attribute of every user configures in the listener configured the ACL for that + given user. Only topic ACLs are supported by Mosquitto in this setting, so no prefix is + required or allowed. + +The default ACL for a listener is empty, disallowing all accesses from all clients. To configure +a completely open ACL, set `acl = [ "pattern readwrite #" ]` in the listener. diff --git a/nixos/modules/services/networking/mosquitto.nix b/nixos/modules/services/networking/mosquitto.nix index 5a573cbf4ac9..2d498d4dbbcf 100644 --- a/nixos/modules/services/networking/mosquitto.nix +++ b/nixos/modules/services/networking/mosquitto.nix @@ -257,18 +257,28 @@ let users = mkOption { type = attrsOf userOptions; - example = { john = { password = "123456"; acl = [ "topic readwrite john/#" ]; }; }; + example = { john = { password = "123456"; acl = [ "readwrite john/#" ]; }; }; description = '' A set of users and their passwords and ACLs. ''; default = {}; }; + omitPasswordAuth = mkOption { + type = bool; + description = '' + Omits password checking, allowing anyone to log in with any user name unless + other mandatory authentication methods (eg TLS client certificates) are configured. + ''; + default = false; + }; + acl = mkOption { type = listOf str; description = '' Additional ACL items to prepend to the generated ACL file. ''; + example = [ "pattern read #" "topic readwrite anon/report/#" ]; default = []; }; @@ -294,9 +304,9 @@ let formatListener = idx: listener: [ "listener ${toString listener.port} ${toString listener.address}" - "password_file ${cfg.dataDir}/passwd-${toString idx}" "acl_file ${makeACLFile idx listener.users listener.acl}" ] + ++ optional (! listener.omitPasswordAuth) "password_file ${cfg.dataDir}/passwd-${toString idx}" ++ formatFreeform {} listener.settings ++ concatMap formatAuthPlugin listener.authPlugins; @@ -645,5 +655,10 @@ in }; - meta.maintainers = with lib.maintainers; [ pennae ]; + meta = { + maintainers = with lib.maintainers; [ pennae ]; + # Don't edit the docbook xml directly, edit the md and generate it: + # `pandoc mosquitto.md -t docbook --top-level-division=chapter --extract-media=media -f markdown+smart > mosquitto.xml` + doc = ./mosquitto.xml; + }; } diff --git a/nixos/modules/services/networking/mosquitto.xml b/nixos/modules/services/networking/mosquitto.xml new file mode 100644 index 000000000000..d16ab28c0269 --- /dev/null +++ b/nixos/modules/services/networking/mosquitto.xml @@ -0,0 +1,147 @@ + + Mosquitto + + Mosquitto is a MQTT broker often used for IoT or home automation + data transport. + +
+ Quickstart + + A minimal configuration for Mosquitto is + + +services.mosquitto = { + enable = true; + listeners = [ { + acl = [ "pattern readwrite #" ]; + omitPasswordAuth = true; + settings.allow_anonymous = true; + } ]; +}; + + + This will start a broker on port 1883, listening on all interfaces + of the machine, allowing read/write access to all topics to any + user without password requirements. + + + User authentication can be configured with the + users key of listeners. A config that gives + full read access to a user monitor and + restricted write access to a user service could + look like + + +services.mosquitto = { + enable = true; + listeners = [ { + users = { + monitor = { + acl = [ "read #" ]; + password = "monitor"; + }; + service = { + acl = [ "write service/#" ]; + password = "service"; + }; + }; + } ]; +}; + + + TLS authentication is configured by setting TLS-related options of + the listener: + + +services.mosquitto = { + enable = true; + listeners = [ { + port = 8883; # port change is not required, but helpful to avoid mistakes + # ... + settings = { + cafile = "/path/to/mqtt.ca.pem"; + certfile = "/path/to/mqtt.pem"; + keyfile = "/path/to/mqtt.key"; + }; + } ]; + +
+
+ Configuration + + The Mosquitto configuration has four distinct types of settings: + the global settings of the daemon, listeners, plugins, and + bridges. Bridges and listeners are part of the global + configuration, plugins are part of listeners. Users of the broker + are configured as parts of listeners rather than globally, + allowing configurations in which a given user is only allowed to + log in to the broker using specific listeners (eg to configure an + admin user with full access to all topics, but restricted to + localhost). + + + Almost all options of Mosquitto are available for configuration at + their appropriate levels, some as NixOS options written in camel + case, the remainders under settings with their + exact names in the Mosquitto config file. The exceptions are + acl_file (which is always set according to the + acl attributes of a listener and its users) and + per_listener_settings (which is always set to + true). + +
+ Password authentication + + Mosquitto can be run in two modes, with a password file or + without. Each listener has its own password file, and different + listeners may use different password files. Password file + generation can be disabled by setting + omitPasswordAuth = true for a listener; in + this case it is necessary to either set + settings.allow_anonymous = true to allow all + logins, or to configure other authentication methods like TLS + client certificates with + settings.use_identity_as_username = true. + + + The default is to generate a password file for each listener + from the users configured to that listener. Users with no + configured password will not be added to the password file and + thus will not be able to use the broker. + +
+
+ ACL format + + Every listener has a Mosquitto acl_file + attached to it. This ACL is configured via two attributes of the + config: + + + + + the acl attribute of the listener + configures pattern ACL entries and topic ACL entries for + anonymous users. Each entry must be prefixed with + pattern or topic to + distinguish between these two cases. + + + + + the acl attribute of every user + configures in the listener configured the ACL for that given + user. Only topic ACLs are supported by Mosquitto in this + setting, so no prefix is required or allowed. + + + + + The default ACL for a listener is empty, disallowing all + accesses from all clients. To configure a completely open ACL, + set acl = [ "pattern readwrite #" ] + in the listener. + +
+
+ diff --git a/nixos/modules/services/networking/tinc.nix b/nixos/modules/services/networking/tinc.nix index 1d77503d68bc..9db433fa0735 100644 --- a/nixos/modules/services/networking/tinc.nix +++ b/nixos/modules/services/networking/tinc.nix @@ -289,13 +289,13 @@ in }; chroot = mkOption { - default = true; + default = false; type = types.bool; description = '' Change process root directory to the directory where the config file is located (/etc/tinc/netname/), for added security. The chroot is performed after all the initialization is done, after writing pid files and opening network sockets. - Note that tinc can't run scripts anymore (such as tinc-down or host-up), unless it is setup to be runnable inside chroot environment. + Note that this currently breaks dns resolution and tinc can't run scripts anymore (such as tinc-down or host-up), unless it is setup to be runnable inside chroot environment. ''; }; diff --git a/nixos/modules/services/networking/unifi.nix b/nixos/modules/services/networking/unifi.nix index caf89c84397f..53ad4df477fc 100644 --- a/nixos/modules/services/networking/unifi.nix +++ b/nixos/modules/services/networking/unifi.nix @@ -9,25 +9,6 @@ let ${optionalString (cfg.maximumJavaHeapSize != null) "-Xmx${(toString cfg.maximumJavaHeapSize)}m"} \ -jar ${stateDir}/lib/ace.jar ''; - mountPoints = [ - { - what = "${cfg.unifiPackage}/dl"; - where = "${stateDir}/dl"; - } - { - what = "${cfg.unifiPackage}/lib"; - where = "${stateDir}/lib"; - } - { - what = "${cfg.mongodbPackage}/bin"; - where = "${stateDir}/bin"; - } - { - what = "${cfg.dataDir}"; - where = "${stateDir}/data"; - } - ]; - systemdMountPoints = map (m: "${utils.escapeSystemdPath m.where}.mount") mountPoints; in { @@ -68,16 +49,6 @@ in ''; }; - services.unifi.dataDir = mkOption { - type = types.str; - default = "${stateDir}/data"; - description = '' - Where to store the database and other data. - - This directory will be bind-mounted to ${stateDir}/data as part of the service startup. - ''; - }; - services.unifi.openPorts = mkOption { type = types.bool; default = true; @@ -136,32 +107,11 @@ in ]; }; - # We must create the binary directories as bind mounts instead of symlinks - # This is because the controller resolves all symlinks to absolute paths - # to be used as the working directory. - systemd.mounts = map ({ what, where }: { - bindsTo = [ "unifi.service" ]; - partOf = [ "unifi.service" ]; - unitConfig.RequiresMountsFor = stateDir; - options = "bind"; - what = what; - where = where; - }) mountPoints; - - systemd.tmpfiles.rules = [ - "d '${stateDir}' 0700 unifi - - -" - "d '${stateDir}/data' 0700 unifi - - -" - "d '${stateDir}/webapps' 0700 unifi - - -" - "L+ '${stateDir}/webapps/ROOT' - - - - ${cfg.unifiPackage}/webapps/ROOT" - ]; - systemd.services.unifi = { description = "UniFi controller daemon"; wantedBy = [ "multi-user.target" ]; - after = [ "network.target" ] ++ systemdMountPoints; - partOf = systemdMountPoints; - bindsTo = systemdMountPoints; - unitConfig.RequiresMountsFor = stateDir; + after = [ "network.target" ]; + # This a HACK to fix missing dependencies of dynamic libs extracted from jars environment.LD_LIBRARY_PATH = with pkgs.stdenv; "${cc.cc.lib}/lib"; # Make sure package upgrades trigger a service restart @@ -209,8 +159,27 @@ in SystemCallErrorNumber = "EPERM"; SystemCallFilter = [ "@system-service" ]; - # Required for ProtectSystem=strict - BindPaths = [ stateDir ]; + StateDirectory = "unifi"; + RuntimeDirectory = "unifi"; + LogsDirectory = "unifi"; + CacheDirectory= "unifi"; + + TemporaryFileSystem = [ + # required as we want to create bind mounts below + "${stateDir}/webapps:rw" + ]; + + # We must create the binary directories as bind mounts instead of symlinks + # This is because the controller resolves all symlinks to absolute paths + # to be used as the working directory. + BindPaths = [ + "/var/log/unifi:${stateDir}/logs" + "/run/unifi:${stateDir}/run" + "${cfg.unifiPackage}/dl:${stateDir}/dl" + "${cfg.unifiPackage}/lib:${stateDir}/lib" + "${cfg.mongodbPackage}/bin:${stateDir}/bin" + "${cfg.unifiPackage}/webapps/ROOT:${stateDir}/webapps/ROOT" + ]; # Needs network access PrivateNetwork = false; @@ -220,6 +189,9 @@ in }; }; + imports = [ + (mkRemovedOptionModule [ "services" "unifi" "dataDir" ] "You should move contents of dataDir to /var/lib/unifi/data" ) + ]; meta.maintainers = with lib.maintainers; [ erictapen pennae ]; } diff --git a/nixos/modules/services/security/tor.nix b/nixos/modules/services/security/tor.nix index c94b248d5f10..c3e3248ee8ab 100644 --- a/nixos/modules/services/security/tor.nix +++ b/nixos/modules/services/security/tor.nix @@ -1012,6 +1012,7 @@ in # Tor cannot currently bind privileged port when PrivateUsers=true, # see https://gitlab.torproject.org/legacy/trac/-/issues/20930 PrivateUsers = !bindsPrivilegedPort; + ProcSubset = "pid"; ProtectClock = true; ProtectControlGroups = true; ProtectHome = true; @@ -1019,6 +1020,7 @@ in ProtectKernelLogs = true; ProtectKernelModules = true; ProtectKernelTunables = true; + ProtectProc = "invisible"; ProtectSystem = "strict"; RemoveIPC = true; RestrictAddressFamilies = [ "AF_UNIX" "AF_INET" "AF_INET6" "AF_NETLINK" ]; diff --git a/nixos/modules/services/video/epgstation/default.nix b/nixos/modules/services/video/epgstation/default.nix index e34b6e0510a5..36f7b937d5ac 100644 --- a/nixos/modules/services/video/epgstation/default.nix +++ b/nixos/modules/services/video/epgstation/default.nix @@ -33,7 +33,7 @@ let fi ''; - streamingConfig = builtins.fromJSON (builtins.readFile ./streaming.json); + streamingConfig = lib.importJSON ./streaming.json; logConfig = { appenders.stdout.type = "stdout"; categories = { diff --git a/nixos/modules/services/web-apps/code-server.nix b/nixos/modules/services/web-apps/code-server.nix new file mode 100644 index 000000000000..474e9140ae87 --- /dev/null +++ b/nixos/modules/services/web-apps/code-server.nix @@ -0,0 +1,139 @@ +{ config, lib, pkgs, ... }: + +with lib; +let + + cfg = config.services.code-server; + defaultUser = "code-server"; + defaultGroup = defaultUser; + +in { + ###### interface + options = { + services.code-server = { + enable = mkEnableOption "code-server"; + + package = mkOption { + default = pkgs.code-server; + defaultText = "pkgs.code-server"; + description = "Which code-server derivation to use."; + type = types.package; + }; + + extraPackages = mkOption { + default = [ ]; + description = "Packages that are available in the PATH of code-server."; + example = "[ pkgs.go ]"; + type = types.listOf types.package; + }; + + extraEnvironment = mkOption { + type = types.attrsOf types.str; + description = + "Additional environment variables to passed to code-server."; + default = { }; + example = { PKG_CONFIG_PATH = "/run/current-system/sw/lib/pkgconfig"; }; + }; + + extraArguments = mkOption { + default = [ "--disable-telemetry" ]; + description = "Additional arguments that passed to code-server"; + example = ''[ "--verbose" ]''; + type = types.listOf types.str; + }; + + host = mkOption { + default = "127.0.0.1"; + description = "The host-ip to bind to."; + type = types.str; + }; + + port = mkOption { + default = 4444; + description = "The port where code-server runs."; + type = types.port; + }; + + auth = mkOption { + default = "password"; + description = "The type of authentication to use."; + type = types.enum [ "none" "password" ]; + }; + + hashedPassword = mkOption { + default = ""; + description = + "Create the password with: 'echo -n 'thisismypassword' | npx argon2-cli -e'."; + type = types.str; + }; + + user = mkOption { + default = defaultUser; + example = "yourUser"; + description = '' + The user to run code-server as. + By default, a user named ${defaultUser} will be created. + ''; + type = types.str; + }; + + group = mkOption { + default = defaultGroup; + example = "yourGroup"; + description = '' + The group to run code-server under. + By default, a group named ${defaultGroup} will be created. + ''; + type = types.str; + }; + + extraGroups = mkOption { + default = [ ]; + description = + "An array of additional groups for the ${defaultUser} user."; + example = [ "docker" ]; + type = types.listOf types.str; + }; + + }; + }; + + ###### implementation + config = mkIf cfg.enable { + systemd.services.code-server = { + description = "VSCode server"; + wantedBy = [ "multi-user.target" ]; + after = [ "network-online.target" ]; + path = cfg.extraPackages; + environment = { + HASHED_PASSWORD = cfg.hashedPassword; + } // cfg.extraEnvironment; + serviceConfig = { + ExecStart = "${cfg.package}/bin/code-server --bind-addr ${cfg.host}:${toString cfg.port} --auth ${cfg.auth} " + builtins.concatStringsSep " " cfg.extraArguments; + ExecReload = "${pkgs.coreutils}/bin/kill -HUP $MAINPID"; + RuntimeDirectory = cfg.user; + User = cfg.user; + Group = cfg.group; + Restart = "on-failure"; + }; + + }; + + users.users."${cfg.user}" = mkMerge [ + (mkIf (cfg.user == defaultUser) { + isNormalUser = true; + description = "code-server user"; + inherit (cfg) group; + }) + { + packages = cfg.extraPackages; + inherit (cfg) extraGroups; + } + ]; + + users.groups."${defaultGroup}" = mkIf (cfg.group == defaultGroup) { }; + + }; + + meta.maintainers = with maintainers; [ stackshadow ]; +} diff --git a/nixos/modules/services/web-apps/hledger-web.nix b/nixos/modules/services/web-apps/hledger-web.nix index 9c66589dffd1..4f6a34e6d2fe 100644 --- a/nixos/modules/services/web-apps/hledger-web.nix +++ b/nixos/modules/services/web-apps/hledger-web.nix @@ -118,7 +118,7 @@ in { ++ extraOptions); in { description = "hledger-web - web-app for the hledger accounting tool."; - documentation = [ https://hledger.org/hledger-web.html ]; + documentation = [ "https://hledger.org/hledger-web.html" ]; wantedBy = [ "multi-user.target" ]; after = [ "networking.target" ]; serviceConfig = mkMerge [ diff --git a/nixos/modules/services/web-apps/mastodon.nix b/nixos/modules/services/web-apps/mastodon.nix index 2458cb3b5942..1e3c7e53c175 100644 --- a/nixos/modules/services/web-apps/mastodon.nix +++ b/nixos/modules/services/web-apps/mastodon.nix @@ -38,7 +38,7 @@ let // (if cfg.smtp.authenticate then { SMTP_LOGIN = cfg.smtp.user; } else {}) // cfg.extraConfig; - systemCallsList = [ "@clock" "@cpu-emulation" "@debug" "@keyring" "@module" "@mount" "@obsolete" "@raw-io" "@reboot" "@setuid" "@swap" ]; + systemCallsList = [ "@cpu-emulation" "@debug" "@keyring" "@ipc" "@mount" "@obsolete" "@privileged" "@setuid" ]; cfgService = { # User and group @@ -50,6 +50,9 @@ let # Logs directory and mode LogsDirectory = "mastodon"; LogsDirectoryMode = "0750"; + # Proc filesystem + ProcSubset = "pid"; + ProtectProc = "invisible"; # Access write directories UMask = "0027"; # Capabilities @@ -74,6 +77,7 @@ let MemoryDenyWriteExecute = false; RestrictRealtime = true; RestrictSUIDSGID = true; + RemoveIPC = true; PrivateMounts = true; # System Call Filtering SystemCallArchitectures = "native"; @@ -464,7 +468,7 @@ in { Type = "oneshot"; WorkingDirectory = cfg.package; # System Call Filtering - SystemCallFilter = "~" + lib.concatStringsSep " " (systemCallsList ++ [ "@resources" ]); + SystemCallFilter = [ ("~" + lib.concatStringsSep " " (systemCallsList ++ [ "@resources" ])) "@chown" "pipe" "pipe2" ]; } // cfgService; after = [ "network.target" ]; @@ -491,7 +495,7 @@ in { EnvironmentFile = "/var/lib/mastodon/.secrets_env"; WorkingDirectory = cfg.package; # System Call Filtering - SystemCallFilter = "~" + lib.concatStringsSep " " (systemCallsList ++ [ "@resources" ]); + SystemCallFilter = [ ("~" + lib.concatStringsSep " " (systemCallsList ++ [ "@resources" ])) "@chown" "pipe" "pipe2" ]; } // cfgService; after = [ "mastodon-init-dirs.service" "network.target" ] ++ (if databaseActuallyCreateLocally then [ "postgresql.service" ] else []); wantedBy = [ "multi-user.target" ]; @@ -517,7 +521,7 @@ in { RuntimeDirectory = "mastodon-streaming"; RuntimeDirectoryMode = "0750"; # System Call Filtering - SystemCallFilter = "~" + lib.concatStringsSep " " (systemCallsList ++ [ "@privileged" "@resources" ]); + SystemCallFilter = [ ("~" + lib.concatStringsSep " " (systemCallsList ++ [ "@memlock" "@resources" ])) "pipe" "pipe2" ]; } // cfgService; }; @@ -541,7 +545,7 @@ in { RuntimeDirectory = "mastodon-web"; RuntimeDirectoryMode = "0750"; # System Call Filtering - SystemCallFilter = "~" + lib.concatStringsSep " " (systemCallsList ++ [ "@resources" ]); + SystemCallFilter = [ ("~" + lib.concatStringsSep " " systemCallsList) "@chown" "pipe" "pipe2" ]; } // cfgService; path = with pkgs; [ file imagemagick ffmpeg ]; }; @@ -563,7 +567,7 @@ in { EnvironmentFile = "/var/lib/mastodon/.secrets_env"; WorkingDirectory = cfg.package; # System Call Filtering - SystemCallFilter = "~" + lib.concatStringsSep " " systemCallsList; + SystemCallFilter = [ ("~" + lib.concatStringsSep " " systemCallsList) "@chown" "pipe" "pipe2" ]; } // cfgService; path = with pkgs; [ file imagemagick ffmpeg ]; }; diff --git a/nixos/modules/services/web-apps/matomo.nix b/nixos/modules/services/web-apps/matomo.nix index b0d281cfb6ed..eba55e7e9bef 100644 --- a/nixos/modules/services/web-apps/matomo.nix +++ b/nixos/modules/services/web-apps/matomo.nix @@ -24,6 +24,7 @@ in { (mkRemovedOptionModule [ "services" "piwik" "phpfpmProcessManagerConfig" ] "Use services.phpfpm.pools..settings") (mkRemovedOptionModule [ "services" "matomo" "phpfpmProcessManagerConfig" ] "Use services.phpfpm.pools..settings") (mkRenamedOptionModule [ "services" "piwik" "nginx" ] [ "services" "matomo" "nginx" ]) + (mkRenamedOptionModule [ "services" "matomo" "periodicArchiveProcessingUrl" ] [ "services" "matomo" "hostname" ]) ]; options = { @@ -77,7 +78,7 @@ in { ''; }; - periodicArchiveProcessingUrl = mkOption { + hostname = mkOption { type = types.str; default = "${user}.${fqdn}"; example = "matomo.yourdomain.org"; @@ -170,6 +171,19 @@ in { fi chown -R ${user}:${user} ${dataDir} chmod -R ug+rwX,o-rwx ${dataDir} + + if [ -e ${dataDir}/current-package ]; then + CURRENT_PACKAGE=$(readlink ${dataDir}/current-package) + NEW_PACKAGE=${cfg.package} + if [ "$CURRENT_PACKAGE" != "$NEW_PACKAGE" ]; then + # keeping tmp arround between upgrades seems to bork stuff, so delete it + rm -rf ${dataDir}/tmp + fi + elif [ -e ${dataDir}/tmp ]; then + # upgrade from 4.4.1 + rm -rf ${dataDir}/tmp + fi + ln -sfT ${cfg.package} ${dataDir}/current-package ''; script = '' # Use User-Private Group scheme to protect Matomo data, but allow administration / backup via 'matomo' group @@ -202,7 +216,7 @@ in { UMask = "0007"; CPUSchedulingPolicy = "idle"; IOSchedulingClass = "idle"; - ExecStart = "${cfg.package}/bin/matomo-console core:archive --url=https://${cfg.periodicArchiveProcessingUrl}"; + ExecStart = "${cfg.package}/bin/matomo-console core:archive --url=https://${cfg.hostname}"; }; }; @@ -258,7 +272,7 @@ in { # References: # https://fralef.me/piwik-hardening-with-nginx-and-php-fpm.html # https://github.com/perusio/piwik-nginx - "${user}.${fqdn}" = mkMerge [ cfg.nginx { + "${cfg.hostname}" = mkMerge [ cfg.nginx { # don't allow to override the root easily, as it will almost certainly break Matomo. # disadvantage: not shown as default in docs. root = mkForce "${cfg.package}/share"; diff --git a/nixos/modules/services/web-apps/openwebrx.nix b/nixos/modules/services/web-apps/openwebrx.nix new file mode 100644 index 000000000000..51005cd1e497 --- /dev/null +++ b/nixos/modules/services/web-apps/openwebrx.nix @@ -0,0 +1,33 @@ +{ config, lib, pkgs, ... }: +let + cfg = config.services.openwebrx; +in +{ + options.services.openwebrx = with lib; { + enable = mkEnableOption "OpenWebRX Web interface for Software-Defined Radios on http://localhost:8073"; + + package = mkOption { + type = types.package; + default = pkgs.openwebrx; + description = "OpenWebRX package to use for the service"; + }; + }; + + config = lib.mkIf cfg.enable { + systemd.services.openwebrx = { + wantedBy = [ "multi-user.target" ]; + path = with pkgs; [ + csdr + alsaUtils + netcat + ]; + serviceConfig = { + ExecStart = "${cfg.package}/bin/openwebrx"; + Restart = "always"; + DynamicUser = true; + # openwebrx uses /var/lib/openwebrx by default + StateDirectory = [ "openwebrx" ]; + }; + }; + }; +} diff --git a/nixos/modules/services/web-apps/plausible.nix b/nixos/modules/services/web-apps/plausible.nix index b56848b79d21..b6c48186a1d3 100644 --- a/nixos/modules/services/web-apps/plausible.nix +++ b/nixos/modules/services/web-apps/plausible.nix @@ -5,23 +5,18 @@ with lib; let cfg = config.services.plausible; - # FIXME consider using LoadCredential as soon as it actually works. - envSecrets = '' - ADMIN_USER_PWD="$(<${cfg.adminUser.passwordFile})" - export ADMIN_USER_PWD # separate export to make `set -e` work - - SECRET_KEY_BASE="$(<${cfg.server.secretKeybaseFile})" - export SECRET_KEY_BASE # separate export to make `set -e` work - - ${optionalString (cfg.mail.smtp.passwordFile != null) '' - SMTP_USER_PWD="$(<${cfg.mail.smtp.passwordFile})" - export SMTP_USER_PWD # separate export to make `set -e` work - ''} - ''; in { options.services.plausible = { enable = mkEnableOption "plausible"; + releaseCookiePath = mkOption { + default = null; + type = with types; nullOr (either str path); + description = '' + The path to the file with release cookie. (used for remote connection to the running node). + ''; + }; + adminUser = { name = mkOption { default = "admin"; @@ -184,13 +179,17 @@ in { enable = true; }; + services.epmd.enable = true; + + environment.systemPackages = [ pkgs.plausible ]; + systemd.services = mkMerge [ { plausible = { inherit (pkgs.plausible.meta) description; documentation = [ "https://plausible.io/docs/self-hosting" ]; wantedBy = [ "multi-user.target" ]; - after = optional cfg.database.postgres.setup "plausible-postgres.service"; + after = optionals cfg.database.postgres.setup [ "postgresql.service" "plausible-postgres.service" ]; requires = optional cfg.database.clickhouse.setup "clickhouse.service" ++ optionals cfg.database.postgres.setup [ "postgresql.service" @@ -200,7 +199,7 @@ in { environment = { # NixOS specific option to avoid that it's trying to write into its store-path. # See also https://github.com/lau/tzdata#data-directory-and-releases - TZDATA_DIR = "/var/lib/plausible/elixir_tzdata"; + STORAGE_DIR = "/var/lib/plausible/elixir_tzdata"; # Configuration options from # https://plausible.io/docs/self-hosting-configuration @@ -208,6 +207,8 @@ in { DISABLE_REGISTRATION = boolToString cfg.server.disableRegistration; RELEASE_TMP = "/var/lib/plausible/tmp"; + # Home is needed to connect to the node with iex + HOME = "/var/lib/plausible"; ADMIN_USER_NAME = cfg.adminUser.name; ADMIN_USER_EMAIL = cfg.adminUser.email; @@ -231,28 +232,33 @@ in { path = [ pkgs.plausible ] ++ optional cfg.database.postgres.setup config.services.postgresql.package; + script = '' + export CONFIG_DIR=$CREDENTIALS_DIRECTORY + + # setup + ${pkgs.plausible}/createdb.sh + ${pkgs.plausible}/migrate.sh + ${optionalString cfg.adminUser.activate '' + if ! ${pkgs.plausible}/init-admin.sh | grep 'already exists'; then + psql -d plausible <<< "UPDATE users SET email_verified=true;" + fi + ''} + ${optionalString (cfg.releaseCookiePath != null) '' + export RELEASE_COOKIE="$(< $CREDENTIALS_DIRECTORY/RELEASE_COOKIE )" + ''} + plausible start + ''; serviceConfig = { DynamicUser = true; PrivateTmp = true; WorkingDirectory = "/var/lib/plausible"; StateDirectory = "plausible"; - ExecStartPre = "@${pkgs.writeShellScript "plausible-setup" '' - set -eu -o pipefail - ${envSecrets} - ${pkgs.plausible}/createdb.sh - ${pkgs.plausible}/migrate.sh - ${optionalString cfg.adminUser.activate '' - if ! ${pkgs.plausible}/init-admin.sh | grep 'already exists'; then - psql -d plausible <<< "UPDATE users SET email_verified=true;" - fi - ''} - ''} plausible-setup"; - ExecStart = "@${pkgs.writeShellScript "plausible" '' - set -eu -o pipefail - ${envSecrets} - plausible start - ''} plausible"; + LoadCredential = [ + "ADMIN_USER_PWD:${cfg.adminUser.passwordFile}" + "SECRET_KEY_BASE:${cfg.server.secretKeybaseFile}" + ] ++ lib.optionals (cfg.mail.smtp.passwordFile != null) [ "SMTP_USER_PWD:${cfg.mail.smtp.passwordFile}"] + ++ lib.optionals (cfg.releaseCookiePath != null) [ "RELEASE_COOKIE:${cfg.releaseCookiePath}"]; }; }; } @@ -260,20 +266,22 @@ in { # `plausible' requires the `citext'-extension. plausible-postgres = { after = [ "postgresql.service" ]; - bindsTo = [ "postgresql.service" ]; - requiredBy = [ "plausible.service" ]; partOf = [ "plausible.service" ]; - serviceConfig.Type = "oneshot"; - unitConfig.ConditionPathExists = "!/var/lib/plausible/.db-setup"; - script = '' - mkdir -p /var/lib/plausible/ + serviceConfig = { + Type = "oneshot"; + User = config.services.postgresql.superUser; + RemainAfterExit = true; + }; + script = with cfg.database.postgres; '' PSQL() { - /run/wrappers/bin/sudo -Hu postgres ${config.services.postgresql.package}/bin/psql --port=5432 "$@" + ${config.services.postgresql.package}/bin/psql --port=5432 "$@" } - PSQL -tAc "CREATE ROLE plausible WITH LOGIN;" - PSQL -tAc "CREATE DATABASE plausible WITH OWNER plausible;" - PSQL -d plausible -tAc "CREATE EXTENSION IF NOT EXISTS citext;" - touch /var/lib/plausible/.db-setup + # check if the database already exists + if ! PSQL -lqt | ${pkgs.coreutils}/bin/cut -d \| -f 1 | ${pkgs.gnugrep}/bin/grep -qw ${dbname} ; then + PSQL -tAc "CREATE ROLE plausible WITH LOGIN;" + PSQL -tAc "CREATE DATABASE ${dbname} WITH OWNER plausible;" + PSQL -d ${dbname} -tAc "CREATE EXTENSION IF NOT EXISTS citext;" + fi ''; }; }) diff --git a/nixos/modules/services/web-apps/zabbix.nix b/nixos/modules/services/web-apps/zabbix.nix index 21567896a89e..ff50b95254f9 100644 --- a/nixos/modules/services/web-apps/zabbix.nix +++ b/nixos/modules/services/web-apps/zabbix.nix @@ -21,7 +21,8 @@ let $DB['PORT'] = '${toString cfg.database.port}'; $DB['DATABASE'] = '${cfg.database.name}'; $DB['USER'] = '${cfg.database.user}'; - $DB['PASSWORD'] = ${if cfg.database.passwordFile != null then "file_get_contents('${cfg.database.passwordFile}')" else "''"}; + # NOTE: file_get_contents adds newline at the end of returned string + $DB['PASSWORD'] = ${if cfg.database.passwordFile != null then "trim(file_get_contents('${cfg.database.passwordFile}'), \"\\r\\n\")" else "''"}; // Schema name. Used for IBM DB2 and PostgreSQL. $DB['SCHEMA'] = '''; $ZBX_SERVER = '${cfg.server.address}'; diff --git a/nixos/modules/services/web-servers/trafficserver/default.nix b/nixos/modules/services/web-servers/trafficserver/default.nix index 706ea5bfefba..b52087fa038c 100644 --- a/nixos/modules/services/web-servers/trafficserver/default.nix +++ b/nixos/modules/services/web-servers/trafficserver/default.nix @@ -61,7 +61,7 @@ in ipAllow = mkOption { type = types.nullOr yaml.type; - default = builtins.fromJSON (builtins.readFile ./ip_allow.json); + default = lib.importJSON ./ip_allow.json; defaultText = literalDocBook "upstream defaults"; example = literalExpression '' { @@ -84,7 +84,7 @@ in logging = mkOption { type = types.nullOr yaml.type; - default = builtins.fromJSON (builtins.readFile ./logging.json); + default = lib.importJSON ./logging.json; defaultText = literalDocBook "upstream defaults"; example = { }; description = '' diff --git a/nixos/modules/services/x11/clight.nix b/nixos/modules/services/x11/clight.nix index 873f425fb8be..d994a658cbaa 100644 --- a/nixos/modules/services/x11/clight.nix +++ b/nixos/modules/services/x11/clight.nix @@ -71,6 +71,14 @@ in { }; config = mkIf cfg.enable { + assertions = let + inRange = v: l: r: v >= l && v <= r; + in [ + { assertion = config.location.provider == "manual" -> + inRange config.location.latitude (-90) 90 && inRange config.location.longitude (-180) 180; + message = "You must specify a valid latitude and longitude if manually providing location"; } + ]; + boot.kernelModules = [ "i2c_dev" ]; environment.systemPackages = with pkgs; [ clight clightd ]; services.dbus.packages = with pkgs; [ clight clightd ]; diff --git a/nixos/modules/services/x11/desktop-managers/plasma5.nix b/nixos/modules/services/x11/desktop-managers/plasma5.nix index 52b641e23bdc..8a1793484e23 100644 --- a/nixos/modules/services/x11/desktop-managers/plasma5.nix +++ b/nixos/modules/services/x11/desktop-managers/plasma5.nix @@ -189,6 +189,10 @@ in ]; services.xserver.displayManager.sessionPackages = [ pkgs.libsForQt5.plasma5.plasma-workspace ]; + # Default to be `plasma` (X11) instead of `plasmawayland`, since plasma wayland currently has + # many tiny bugs. + # See: https://github.com/NixOS/nixpkgs/issues/143272 + services.xserver.displayManager.defaultSession = mkDefault "plasma"; security.wrappers = { kcheckpass = { diff --git a/nixos/modules/services/x11/display-managers/default.nix b/nixos/modules/services/x11/display-managers/default.nix index d910ac566d87..bdc46faa7fd0 100644 --- a/nixos/modules/services/x11/display-managers/default.nix +++ b/nixos/modules/services/x11/display-managers/default.nix @@ -280,7 +280,7 @@ in null; example = "gnome"; description = '' - Graphical session to pre-select in the session chooser (only effective for GDM and LightDM). + Graphical session to pre-select in the session chooser (only effective for GDM, LightDM and SDDM). On GDM, LightDM and SDDM, it will also be used as a session for auto-login. ''; diff --git a/nixos/modules/services/x11/display-managers/lightdm.nix b/nixos/modules/services/x11/display-managers/lightdm.nix index 1c9a5f978c54..9a7532b47641 100644 --- a/nixos/modules/services/x11/display-managers/lightdm.nix +++ b/nixos/modules/services/x11/display-managers/lightdm.nix @@ -146,7 +146,7 @@ in }; background = mkOption { - type = types.path; + type = types.either types.path (types.strMatching "^#[0-9]\{6\}$"); # Manual cannot depend on packages, we are actually setting the default in config below. defaultText = literalExpression "pkgs.nixos-artwork.wallpapers.simple-dark-gray-bottom.gnomeFilePath"; description = '' diff --git a/nixos/modules/services/x11/display-managers/sddm.nix b/nixos/modules/services/x11/display-managers/sddm.nix index 5a4fad9c4cb1..529a086381f0 100644 --- a/nixos/modules/services/x11/display-managers/sddm.nix +++ b/nixos/modules/services/x11/display-managers/sddm.nix @@ -30,6 +30,9 @@ let HaltCommand = "/run/current-system/systemd/bin/systemctl poweroff"; RebootCommand = "/run/current-system/systemd/bin/systemctl reboot"; Numlock = if cfg.autoNumlock then "on" else "none"; # on, off none + + # Implementation is done via pkgs/applications/display-managers/sddm/sddm-default-session.patch + DefaultSession = optionalString (dmcfg.defaultSession != null) "${dmcfg.defaultSession}.desktop"; }; Theme = { diff --git a/nixos/modules/system/boot/binfmt.nix b/nixos/modules/system/boot/binfmt.nix index 2408ecc80d22..fdb4d0e4c7fb 100644 --- a/nixos/modules/system/boot/binfmt.nix +++ b/nixos/modules/system/boot/binfmt.nix @@ -248,6 +248,7 @@ in { description = '' List of systems to emulate. Will also configure Nix to support your new systems. + Warning: the builder can execute all emulated systems within the same build, which introduces impurities in the case of cross compilation. ''; type = types.listOf types.str; }; diff --git a/nixos/modules/system/boot/systemd.nix b/nixos/modules/system/boot/systemd.nix index 77997ac76863..8fcf62d7fbff 100644 --- a/nixos/modules/system/boot/systemd.nix +++ b/nixos/modules/system/boot/systemd.nix @@ -42,7 +42,7 @@ let "systemd-udevd-kernel.socket" "systemd-udevd.service" "systemd-udev-settle.service" - "systemd-udev-trigger.service" + ] ++ (optional (!config.boot.isContainer) "systemd-udev-trigger.service") ++ [ # hwdb.bin is managed by NixOS # "systemd-hwdb-update.service" diff --git a/nixos/modules/system/etc/setup-etc.pl b/nixos/modules/system/etc/setup-etc.pl index eed20065087f..be6b2d9ae71e 100644 --- a/nixos/modules/system/etc/setup-etc.pl +++ b/nixos/modules/system/etc/setup-etc.pl @@ -138,3 +138,9 @@ foreach my $fn (@oldCopied) { # Rewrite /etc/.clean. close CLEAN; write_file("/etc/.clean", map { "$_\n" } @copied); + +# Create /etc/NIXOS tag if not exists. +# When /etc is not on a persistent filesystem, it will be wiped after reboot, +# so we need to check and re-create it during activation. +open TAG, ">>/etc/NIXOS"; +close TAG; diff --git a/nixos/modules/tasks/filesystems/zfs.nix b/nixos/modules/tasks/filesystems/zfs.nix index 2c03ef7ba7e0..65364801c32a 100644 --- a/nixos/modules/tasks/filesystems/zfs.nix +++ b/nixos/modules/tasks/filesystems/zfs.nix @@ -561,7 +561,8 @@ in then cfgZfs.requestEncryptionCredentials else cfgZfs.requestEncryptionCredentials != []) '' ${cfgZfs.package}/sbin/zfs list -rHo name,keylocation ${pool} | while IFS=$'\t' read ds kl; do - (${optionalString (!isBool cfgZfs.requestEncryptionCredentials) '' + { + ${optionalString (!isBool cfgZfs.requestEncryptionCredentials) '' if ! echo '${concatStringsSep "\n" cfgZfs.requestEncryptionCredentials}' | grep -qFx "$ds"; then continue fi @@ -575,7 +576,8 @@ in * ) ${cfgZfs.package}/sbin/zfs load-key "$ds" ;; - esac) < /dev/null # To protect while read ds kl in case anything reads stdin + esac + } < /dev/null # To protect while read ds kl in case anything reads stdin done ''} echo "Successfully imported ${pool}" diff --git a/nixos/modules/virtualisation/libvirtd.nix b/nixos/modules/virtualisation/libvirtd.nix index 121e7286bc13..ab87394a30ee 100644 --- a/nixos/modules/virtualisation/libvirtd.nix +++ b/nixos/modules/virtualisation/libvirtd.nix @@ -254,7 +254,7 @@ in "allow ${e}") cfg.allowedBridges; systemPackages = with pkgs; [ libressl.nc iptables cfg.package cfg.qemu.package ]; - etc.ethertypes.source = "${pkgs.ebtables}/etc/ethertypes"; + etc.ethertypes.source = "${pkgs.iptables}/etc/ethertypes"; }; boot.kernelModules = [ "tun" ]; diff --git a/nixos/modules/virtualisation/lxc-container.nix b/nixos/modules/virtualisation/lxc-container.nix index e47bd59dc016..9816cc2332fb 100644 --- a/nixos/modules/virtualisation/lxc-container.nix +++ b/nixos/modules/virtualisation/lxc-container.nix @@ -1,26 +1,174 @@ -{ lib, ... }: +{ lib, config, pkgs, ... }: with lib; +let + templateSubmodule = { ... }: { + options = { + enable = mkEnableOption "this template"; + + target = mkOption { + description = "Path in the container"; + type = types.path; + }; + template = mkOption { + description = ".tpl file for rendering the target"; + type = types.path; + }; + when = mkOption { + description = "Events which trigger a rewrite (create, copy)"; + type = types.listOf (types.str); + }; + properties = mkOption { + description = "Additional properties"; + type = types.attrs; + default = {}; + }; + }; + }; + + toYAML = name: data: pkgs.writeText name (generators.toYAML {} data); + + cfg = config.virtualisation.lxc; + templates = if cfg.templates != {} then let + list = mapAttrsToList (name: value: { inherit name; } // value) + (filterAttrs (name: value: value.enable) cfg.templates); + in + { + files = map (tpl: { + source = tpl.template; + target = "/templates/${tpl.name}.tpl"; + }) list; + properties = listToAttrs (map (tpl: nameValuePair tpl.target { + when = tpl.when; + template = "${tpl.name}.tpl"; + properties = tpl.properties; + }) list); + } + else { files = []; properties = {}; }; + +in { imports = [ - ../profiles/docker-container.nix # FIXME, shouldn't include something from profiles/ + ../installer/cd-dvd/channel.nix + ../profiles/minimal.nix + ../profiles/clone-config.nix ]; - # Allow the user to login as root without password. - users.users.root.initialHashedPassword = mkOverride 150 ""; + options = { + virtualisation.lxc = { + templates = mkOption { + description = "Templates for LXD"; + type = types.attrsOf (types.submodule (templateSubmodule)); + default = {}; + example = literalExpression '' + { + # create /etc/hostname on container creation + "hostname" = { + enable = true; + target = "/etc/hostname"; + template = builtins.writeFile "hostname.tpl" "{{ container.name }}"; + when = [ "create" ]; + }; + # create /etc/nixos/hostname.nix with a configuration for keeping the hostname applied + "hostname-nix" = { + enable = true; + target = "/etc/nixos/hostname.nix"; + template = builtins.writeFile "hostname-nix.tpl" "{ ... }: { networking.hostName = "{{ container.name }}"; }"; + # copy keeps the file updated when the container is changed + when = [ "create" "copy" ]; + }; + # copy allow the user to specify a custom configuration.nix + "configuration-nix" = { + enable = true; + target = "/etc/nixos/configuration.nix"; + template = builtins.writeFile "configuration-nix" "{{ config_get(\"user.user-data\", properties.default) }}"; + when = [ "create" ]; + }; + }; + ''; + }; + }; + }; - # Some more help text. - services.getty.helpLine = - '' + config = { + boot.isContainer = true; + boot.postBootCommands = + '' + # After booting, register the contents of the Nix store in the Nix + # database. + if [ -f /nix-path-registration ]; then + ${config.nix.package.out}/bin/nix-store --load-db < /nix-path-registration && + rm /nix-path-registration + fi - Log in as "root" with an empty password. + # nixos-rebuild also requires a "system" profile + ${config.nix.package.out}/bin/nix-env -p /nix/var/nix/profiles/system --set /run/current-system + ''; + + system.build.metadata = pkgs.callPackage ../../lib/make-system-tarball.nix { + contents = [ + { + source = toYAML "metadata.yaml" { + architecture = builtins.elemAt (builtins.match "^([a-z0-9_]+).+" (toString pkgs.system)) 0; + creation_date = 1; + properties = { + description = "NixOS ${config.system.nixos.codeName} ${config.system.nixos.label} ${pkgs.system}"; + os = "nixos"; + release = "${config.system.nixos.codeName}"; + }; + templates = templates.properties; + }; + target = "/metadata.yaml"; + } + ] ++ templates.files; + }; + + # TODO: build rootfs as squashfs for faster unpack + system.build.tarball = pkgs.callPackage ../../lib/make-system-tarball.nix { + extraArgs = "--owner=0"; + + storeContents = [ + { + object = config.system.build.toplevel; + symlink = "none"; + } + ]; + + contents = [ + { + source = config.system.build.toplevel + "/init"; + target = "/sbin/init"; + } + ]; + + extraCommands = "mkdir -p proc sys dev"; + }; + + # Add the overrides from lxd distrobuilder + systemd.extraConfig = '' + [Service] + ProtectProc=default + ProtectControlGroups=no + ProtectKernelTunables=no ''; - # Containers should be light-weight, so start sshd on demand. - services.openssh.enable = mkDefault true; - services.openssh.startWhenNeeded = mkDefault true; + # Allow the user to login as root without password. + users.users.root.initialHashedPassword = mkOverride 150 ""; - # Allow ssh connections - networking.firewall.allowedTCPPorts = [ 22 ]; + system.activationScripts.installInitScript = mkForce '' + ln -fs $systemConfig/init /sbin/init + ''; + + # Some more help text. + services.getty.helpLine = + '' + + Log in as "root" with an empty password. + ''; + + # Containers should be light-weight, so start sshd on demand. + services.openssh.enable = mkDefault true; + services.openssh.startWhenNeeded = mkDefault true; + }; } diff --git a/nixos/modules/virtualisation/lxd.nix b/nixos/modules/virtualisation/lxd.nix index 94cd22d1371c..18451b147ff5 100644 --- a/nixos/modules/virtualisation/lxd.nix +++ b/nixos/modules/virtualisation/lxd.nix @@ -34,7 +34,7 @@ in { package = mkOption { type = types.package; - default = pkgs.lxd.override { nftablesSupport = config.networking.nftables.enable; }; + default = pkgs.lxd; defaultText = literalExpression "pkgs.lxd"; description = '' The LXD package to use. diff --git a/nixos/modules/virtualisation/proxmox-image.nix b/nixos/modules/virtualisation/proxmox-image.nix new file mode 100644 index 000000000000..c537d5aed447 --- /dev/null +++ b/nixos/modules/virtualisation/proxmox-image.nix @@ -0,0 +1,169 @@ +{ config, pkgs, lib, ... }: + +with lib; + +{ + options.proxmox = { + qemuConf = { + # essential configs + boot = mkOption { + type = types.str; + default = ""; + example = "order=scsi0;net0"; + description = '' + Default boot device. PVE will try all devices in its default order if this value is empty. + ''; + }; + scsihw = mkOption { + type = types.str; + default = "virtio-scsi-pci"; + example = "lsi"; + description = '' + SCSI controller type. Must be one of the supported values given in + + ''; + }; + virtio0 = mkOption { + type = types.str; + default = "local-lvm:vm-9999-disk-0"; + example = "ceph:vm-123-disk-0"; + description = '' + Configuration for the default virtio disk. It can be used as a cue for PVE to autodetect the target sotrage. + This parameter is required by PVE even if it isn't used. + ''; + }; + ostype = mkOption { + type = types.str; + default = "l26"; + description = '' + Guest OS type + ''; + }; + cores = mkOption { + type = types.ints.positive; + default = 1; + description = '' + Guest core count + ''; + }; + memory = mkOption { + type = types.ints.positive; + default = 1024; + description = '' + Guest memory in MB + ''; + }; + + # optional configs + name = mkOption { + type = types.str; + default = "nixos-${config.system.nixos.label}"; + description = '' + VM name + ''; + }; + net0 = mkOption { + type = types.commas; + default = "virtio=00:00:00:00:00:00,bridge=vmbr0,firewall=1"; + description = '' + Configuration for the default interface. When restoring from VMA, check the + "unique" box to ensure device mac is randomized. + ''; + }; + serial0 = mkOption { + type = types.str; + default = "socket"; + example = "/dev/ttyS0"; + description = '' + Create a serial device inside the VM (n is 0 to 3), and pass through a host serial device (i.e. /dev/ttyS0), + or create a unix socket on the host side (use qm terminal to open a terminal connection). + ''; + }; + agent = mkOption { + type = types.bool; + apply = x: if x then "1" else "0"; + default = true; + description = '' + Expect guest to have qemu agent running + ''; + }; + }; + qemuExtraConf = mkOption { + type = with types; attrsOf (oneOf [ str int ]); + default = {}; + example = literalExpression ''{ + cpu = "host"; + onboot = 1; + }''; + description = '' + Additional options appended to qemu-server.conf + ''; + }; + filenameSuffix = mkOption { + type = types.str; + default = config.proxmox.qemuConf.name; + example = "999-nixos_template"; + description = '' + Filename of the image will be vzdump-qemu-''${filenameSuffix}.vma.zstd. + This will also determine the default name of the VM on restoring the VMA. + Start this value with a number if you want the VMA to be detected as a backup of + any specific VMID. + ''; + }; + }; + + config = let + cfg = config.proxmox; + cfgLine = name: value: '' + ${name}: ${builtins.toString value} + ''; + cfgFile = fileName: properties: pkgs.writeTextDir fileName '' + # generated by NixOS + ${lib.concatStrings (lib.mapAttrsToList cfgLine properties)} + #qmdump#map:virtio0:drive-virtio0:local-lvm:raw: + ''; + in { + system.build.VMA = import ../../lib/make-disk-image.nix { + name = "proxmox-${cfg.filenameSuffix}"; + postVM = let + # Build qemu with PVE's patch that adds support for the VMA format + vma = pkgs.qemu_kvm.overrideAttrs ( super: { + patches = let + rev = "cc707c362ea5c8d832aac270d1ffa7ac66a8908f"; + path = "debian/patches/pve/0025-PVE-Backup-add-vma-backup-format-code.patch"; + vma-patch = pkgs.fetchpatch { + url = "https://git.proxmox.com/?p=pve-qemu.git;a=blob_plain;hb=${rev};f=${path}"; + sha256 = "1z467xnmfmry3pjy7p34psd5xdil9x0apnbvfz8qbj0bf9fgc8zf"; + }; + in super.patches ++ [ vma-patch ]; + buildInputs = super.buildInputs ++ [ pkgs.libuuid ]; + }); + in + '' + ${vma}/bin/vma create "vzdump-qemu-${cfg.filenameSuffix}.vma" \ + -c ${cfgFile "qemu-server.conf" (cfg.qemuConf // cfg.qemuExtraConf)}/qemu-server.conf drive-virtio0=$diskImage + rm $diskImage + ${pkgs.zstd}/bin/zstd "vzdump-qemu-${cfg.filenameSuffix}.vma" + mv "vzdump-qemu-${cfg.filenameSuffix}.vma.zst" $out/ + ''; + format = "raw"; + inherit config lib pkgs; + }; + + boot = { + growPartition = true; + kernelParams = [ "console=ttyS0" ]; + loader.grub.device = lib.mkDefault "/dev/vda"; + loader.timeout = 0; + initrd.availableKernelModules = [ "uas" "virtio_blk" "virtio_pci" ]; + }; + + fileSystems."/" = { + device = "/dev/disk/by-label/nixos"; + autoResize = true; + fsType = "ext4"; + }; + + services.qemuGuest.enable = lib.mkDefault true; + }; +} diff --git a/nixos/modules/virtualisation/qemu-vm.nix b/nixos/modules/virtualisation/qemu-vm.nix index a8db42f5ed6f..6ce4461babc7 100644 --- a/nixos/modules/virtualisation/qemu-vm.nix +++ b/nixos/modules/virtualisation/qemu-vm.nix @@ -318,7 +318,7 @@ in virtualisation.diskSize = mkOption { type = types.nullOr types.ints.positive; - default = 512; + default = 1024; description = '' The disk size in megabytes of the virtual machine. diff --git a/nixos/modules/virtualisation/virtualbox-host.nix b/nixos/modules/virtualisation/virtualbox-host.nix index 6c742ad371cd..2acf54aae2ef 100644 --- a/nixos/modules/virtualisation/virtualbox-host.nix +++ b/nixos/modules/virtualisation/virtualbox-host.nix @@ -6,7 +6,7 @@ let cfg = config.virtualisation.virtualbox.host; virtualbox = cfg.package.override { - inherit (cfg) enableHardening headless; + inherit (cfg) enableHardening headless enableWebService; extensionPack = if cfg.enableExtensionPack then pkgs.virtualboxExtpack else null; }; @@ -80,6 +80,14 @@ in and when virtual machines are controlled only via SSH. ''; }; + + enableWebService = mkOption { + type = types.bool; + default = false; + description = '' + Build VirtualBox web service tool (vboxwebsrv) to allow managing VMs via other webpage frontend tools. Useful for headless servers. + ''; + }; }; config = mkIf cfg.enable (mkMerge [{ diff --git a/nixos/modules/virtualisation/vmware-guest.nix b/nixos/modules/virtualisation/vmware-guest.nix index 7b25ffc440f8..480a9703cef3 100644 --- a/nixos/modules/virtualisation/vmware-guest.nix +++ b/nixos/modules/virtualisation/vmware-guest.nix @@ -38,7 +38,7 @@ in }; # Mount the vmblock for drag-and-drop and copy-and-paste. - systemd.mounts = [ + systemd.mounts = mkIf (!cfg.headless) [ { description = "VMware vmblock fuse mount"; documentation = [ "https://github.com/vmware/open-vm-tools/blob/master/open-vm-tools/vmblock-fuse/design.txt" ]; @@ -52,8 +52,8 @@ in } ]; - security.wrappers.vmware-user-suid-wrapper = - { setuid = true; + security.wrappers.vmware-user-suid-wrapper = mkIf (!cfg.headless) { + setuid = true; owner = "root"; group = "root"; source = "${open-vm-tools}/bin/vmware-user-suid-wrapper"; diff --git a/nixos/modules/virtualisation/waydroid.nix b/nixos/modules/virtualisation/waydroid.nix new file mode 100644 index 000000000000..854ab056dbb8 --- /dev/null +++ b/nixos/modules/virtualisation/waydroid.nix @@ -0,0 +1,66 @@ +{ config, lib, pkgs, ... }: + +with lib; + +let + + cfg = config.virtualisation.waydroid; + kernelPackages = config.boot.kernelPackages; + waydroidGbinderConf = pkgs.writeText "waydroid.conf" '' + [Protocol] + /dev/binder = aidl2 + /dev/vndbinder = aidl2 + /dev/hwbinder = hidl + + [ServiceManager] + /dev/binder = aidl2 + /dev/vndbinder = aidl2 + /dev/hwbinder = hidl + ''; + +in { + + options.virtualisation.waydroid = { + enable = mkEnableOption "Waydroid"; + }; + + config = mkIf cfg.enable { + assertions = singleton { + assertion = versionAtLeast (getVersion config.boot.kernelPackages.kernel) "4.18"; + message = "Waydroid needs user namespace support to work properly"; + }; + + system.requiredKernelConfig = with config.lib.kernelConfig; [ + (isEnabled "ANDROID_BINDER_IPC") + (isEnabled "ANDROID_BINDERFS") + (isEnabled "ASHMEM") + ]; + + environment.etc."gbinder.d/waydroid.conf".source = waydroidGbinderConf; + + environment.systemPackages = with pkgs; [ waydroid ]; + + networking.firewall.trustedInterfaces = [ "waydroid0" ]; + + virtualisation.lxc.enable = true; + + systemd.services.waydroid-container = { + description = "Waydroid Container"; + + wantedBy = [ "multi-user.target" ]; + + path = with pkgs; [ getent iptables iproute kmod nftables util-linux which ]; + + unitConfig = { + ConditionPathExists = "/var/lib/waydroid/lxc/waydroid"; + }; + + serviceConfig = { + ExecStart = "${pkgs.waydroid}/bin/waydroid container start"; + ExecStop = "${pkgs.waydroid}/bin/waydroid container stop"; + ExecStopPost = "${pkgs.waydroid}/bin/waydroid session stop"; + }; + }; + }; + +} diff --git a/nixos/release.nix b/nixos/release.nix index 264d82bacc8a..6b7564a9b972 100644 --- a/nixos/release.nix +++ b/nixos/release.nix @@ -251,6 +251,37 @@ in rec { ); + # An image that can be imported into lxd and used for container creation + lxdImage = forMatchingSystems [ "x86_64-linux" "aarch64-linux" ] (system: + + with import ./.. { inherit system; }; + + hydraJob ((import lib/eval-config.nix { + inherit system; + modules = + [ configuration + versionModule + ./maintainers/scripts/lxd/lxd-image.nix + ]; + }).config.system.build.tarball) + + ); + + # Metadata for the lxd image + lxdMeta = forMatchingSystems [ "x86_64-linux" "aarch64-linux" ] (system: + + with import ./.. { inherit system; }; + + hydraJob ((import lib/eval-config.nix { + inherit system; + modules = + [ configuration + versionModule + ./maintainers/scripts/lxd/lxd-image.nix + ]; + }).config.system.build.metadata) + + ); # Ensure that all packages used by the minimal NixOS config end up in the channel. dummy = forAllSystems (system: pkgs.runCommand "dummy" diff --git a/nixos/tests/all-tests.nix b/nixos/tests/all-tests.nix index f4d6800aff60..deed04697de5 100644 --- a/nixos/tests/all-tests.nix +++ b/nixos/tests/all-tests.nix @@ -33,7 +33,7 @@ in avahi-with-resolved = handleTest ./avahi.nix { networkd = true; }; babeld = handleTest ./babeld.nix {}; bazarr = handleTest ./bazarr.nix {}; - bcachefs = handleTestOn ["x86_64-linux"] ./bcachefs.nix {}; # linux-4.18.2018.10.12 is unsupported on aarch64 + bcachefs = handleTestOn ["x86_64-linux" "aarch64-linux"] ./bcachefs.nix {}; beanstalkd = handleTest ./beanstalkd.nix {}; bees = handleTest ./bees.nix {}; bind = handleTest ./bind.nix {}; @@ -109,6 +109,7 @@ in docker-tools-overlay = handleTestOn ["x86_64-linux"] ./docker-tools-overlay.nix {}; documize = handleTest ./documize.nix {}; dokuwiki = handleTest ./dokuwiki.nix {}; + domination = handleTest ./domination.nix {}; dovecot = handleTest ./dovecot.nix {}; ec2-config = (handleTestOn ["x86_64-linux"] ./ec2.nix {}).boot-ec2-config or {}; ec2-nixops = (handleTestOn ["x86_64-linux"] ./ec2.nix {}).boot-ec2-nixops or {}; @@ -236,7 +237,9 @@ in login = handleTest ./login.nix {}; loki = handleTest ./loki.nix {}; lxd = handleTest ./lxd.nix {}; + lxd-image = handleTest ./lxd-image.nix {}; lxd-nftables = handleTest ./lxd-nftables.nix {}; + lxd-image-server = handleTest ./lxd-image-server.nix {}; #logstash = handleTest ./logstash.nix {}; lorri = handleTest ./lorri/default.nix {}; magic-wormhole-mailbox-server = handleTest ./magic-wormhole-mailbox-server.nix {}; @@ -258,6 +261,7 @@ in miniflux = handleTest ./miniflux.nix {}; minio = handleTest ./minio.nix {}; misc = handleTest ./misc.nix {}; + mjolnir = handleTest ./matrix/mjolnir.nix {}; mod_perl = handleTest ./mod_perl.nix {}; moinmoin = handleTest ./moinmoin.nix {}; mongodb = handleTest ./mongodb.nix {}; @@ -338,6 +342,7 @@ in packagekit = handleTest ./packagekit.nix {}; pam-oath-login = handleTest ./pam-oath-login.nix {}; pam-u2f = handleTest ./pam-u2f.nix {}; + pantalaimon = handleTest ./matrix/pantalaimon.nix {}; pantheon = handleTest ./pantheon.nix {}; paperless-ng = handleTest ./paperless-ng.nix {}; parsedmarc = handleTest ./parsedmarc {}; @@ -401,6 +406,7 @@ in samba-wsdd = handleTest ./samba-wsdd.nix {}; sanoid = handleTest ./sanoid.nix {}; sddm = handleTest ./sddm.nix {}; + seafile = handleTest ./seafile.nix {}; searx = handleTest ./searx.nix {}; service-runner = handleTest ./service-runner.nix {}; shadow = handleTest ./shadow.nix {}; diff --git a/nixos/tests/boot.nix b/nixos/tests/boot.nix index e8440598a822..9945a1dcd62f 100644 --- a/nixos/tests/boot.nix +++ b/nixos/tests/boot.nix @@ -36,7 +36,7 @@ let machine = create_machine(${machineConfig}) machine.start() machine.wait_for_unit("multi-user.target") - machine.succeed("nix verify -r --no-trust /run/current-system") + machine.succeed("nix store verify --no-trust -r --option experimental-features nix-command /run/current-system") with subtest("Check whether the channel got installed correctly"): machine.succeed("nix-instantiate --dry-run '' -A hello") diff --git a/nixos/tests/chromium.nix b/nixos/tests/chromium.nix index d67acd075a13..8965646bc5dc 100644 --- a/nixos/tests/chromium.nix +++ b/nixos/tests/chromium.nix @@ -86,7 +86,7 @@ mapAttrs (channel: chromiumPkg: makeTest rec { options.append("--use-gl=swiftshader") # Launch the process: options.append("file://${startupHTML}") - machine.succeed(ru(f'ulimit -c unlimited; {binary} {shlex.join(options)} & disown')) + machine.succeed(ru(f'ulimit -c unlimited; {binary} {shlex.join(options)} >&2 & disown')) if binary.startswith("google-chrome"): # Need to click away the first window: machine.wait_for_text("Make Google Chrome the default browser") @@ -215,7 +215,7 @@ mapAttrs (channel: chromiumPkg: makeTest rec { clipboard = machine.succeed( ru( - "echo void | ${pkgs.xclip}/bin/xclip -i" + "echo void | ${pkgs.xclip}/bin/xclip -i >&2" ) ) machine.succeed( diff --git a/nixos/tests/containers-imperative.nix b/nixos/tests/containers-imperative.nix index 361160b1fdc2..34103ef7586b 100644 --- a/nixos/tests/containers-imperative.nix +++ b/nixos/tests/containers-imperative.nix @@ -119,7 +119,7 @@ import ./make-test-python.nix ({ pkgs, lib, ... }: { with subtest("Stop a container early"): machine.succeed(f"nixos-container stop {id1}") - machine.succeed(f"nixos-container start {id1} &") + machine.succeed(f"nixos-container start {id1} >&2 &") machine.wait_for_console_text("Stage 2") machine.succeed(f"nixos-container stop {id1}") machine.wait_for_console_text(f"Container {id1} exited successfully") diff --git a/nixos/tests/croc.nix b/nixos/tests/croc.nix index 75a8fc991d47..5d709eb3d1cb 100644 --- a/nixos/tests/croc.nix +++ b/nixos/tests/croc.nix @@ -38,7 +38,7 @@ in { sender.execute("echo Hello World > testfile01.txt") sender.execute("echo Hello Earth > testfile02.txt") sender.execute( - "croc --pass ${pass} --relay relay send --code topSecret testfile01.txt testfile02.txt &" + "croc --pass ${pass} --relay relay send --code topSecret testfile01.txt testfile02.txt >&2 &" ) # receive the testfiles and check them diff --git a/nixos/tests/deluge.nix b/nixos/tests/deluge.nix index f673ec2db5a7..33c57ce7c36c 100644 --- a/nixos/tests/deluge.nix +++ b/nixos/tests/deluge.nix @@ -5,7 +5,7 @@ import ./make-test-python.nix ({ pkgs, ...} : { }; nodes = { - simple2 = { + simple = { services.deluge = { enable = true; package = pkgs.deluge-2_x; @@ -16,7 +16,7 @@ import ./make-test-python.nix ({ pkgs, ...} : { }; }; - declarative2 = { + declarative = { services.deluge = { enable = true; package = pkgs.deluge-2_x; @@ -45,27 +45,16 @@ import ./make-test-python.nix ({ pkgs, ...} : { testScript = '' start_all() - simple1.wait_for_unit("deluged") - simple2.wait_for_unit("deluged") - simple1.wait_for_unit("delugeweb") - simple2.wait_for_unit("delugeweb") - simple1.wait_for_open_port("8112") - simple2.wait_for_open_port("8112") - declarative1.wait_for_unit("network.target") - declarative2.wait_for_unit("network.target") - declarative1.wait_until_succeeds("curl --fail http://simple1:8112") - declarative2.wait_until_succeeds("curl --fail http://simple2:8112") + simple.wait_for_unit("deluged") + simple.wait_for_unit("delugeweb") + simple.wait_for_open_port("8112") + declarative.wait_for_unit("network.target") + declarative.wait_until_succeeds("curl --fail http://simple:8112") - declarative1.wait_for_unit("deluged") - declarative2.wait_for_unit("deluged") - declarative1.wait_for_unit("delugeweb") - declarative2.wait_for_unit("delugeweb") - declarative1.wait_until_succeeds("curl --fail http://declarative1:3142") - declarative2.wait_until_succeeds("curl --fail http://declarative2:3142") - declarative1.succeed( - "deluge-console 'connect 127.0.0.1:58846 andrew password; help' | grep -q 'rm.*Remove a torrent'" - ) - declarative2.succeed( + declarative.wait_for_unit("deluged") + declarative.wait_for_unit("delugeweb") + declarative.wait_until_succeeds("curl --fail http://declarative:3142") + declarative.succeed( "deluge-console 'connect 127.0.0.1:58846 andrew password; help' | grep -q 'rm.*Remove a torrent'" ) ''; diff --git a/nixos/tests/doas.nix b/nixos/tests/doas.nix index 5e9ce4b2c799..7f038b2bee29 100644 --- a/nixos/tests/doas.nix +++ b/nixos/tests/doas.nix @@ -85,6 +85,14 @@ import ./make-test-python.nix ( # ../../pkgs/tools/security/doas/0001-add-NixOS-specific-dirs-to-safe-PATH.patch with subtest("recursive calls to doas from subprocesses should succeed"): machine.succeed('doas -u test0 sh -c "doas -u test0 true"') + + with subtest("test0 should inherit TERMINFO_DIRS from the user environment"): + dirs = machine.succeed( + "su - test0 -c 'doas -u root $SHELL -c \"echo \$TERMINFO_DIRS\"'" + ) + + if not "test0" in dirs: + raise Exception(f"user profile TERMINFO_DIRS is not preserved: {dirs}") ''; } ) diff --git a/nixos/tests/domination.nix b/nixos/tests/domination.nix new file mode 100644 index 000000000000..c76d4ed8c61b --- /dev/null +++ b/nixos/tests/domination.nix @@ -0,0 +1,26 @@ +import ./make-test-python.nix ({ pkgs, ... }: { + name = "domination"; + meta = with pkgs.lib.maintainers; { + maintainers = [ fgaz ]; + }; + + machine = { config, pkgs, ... }: { + imports = [ + ./common/x11.nix + ]; + + services.xserver.enable = true; + environment.systemPackages = [ pkgs.domination ]; + }; + + enableOCR = true; + + testScript = + '' + machine.wait_for_x() + machine.execute("domination >&2 &") + machine.wait_for_window("Menu") + machine.wait_for_text("New Game") + machine.screenshot("screen") + ''; +}) diff --git a/nixos/tests/elk.nix b/nixos/tests/elk.nix index 2a1a4cba2956..ae746d7e1f03 100644 --- a/nixos/tests/elk.nix +++ b/nixos/tests/elk.nix @@ -1,12 +1,15 @@ +# To run the test on the unfree ELK use the folllowing command: +# cd path/to/nixpkgs +# NIXPKGS_ALLOW_UNFREE=1 nix-build -A nixosTests.elk.unfree.ELK-6 + { system ? builtins.currentSystem, config ? {}, pkgs ? import ../.. { inherit system config; }, - enableUnfree ? false - # To run the test on the unfree ELK use the folllowing command: - # NIXPKGS_ALLOW_UNFREE=1 nix-build nixos/tests/elk.nix -A ELK-6 --arg enableUnfree true }: let + inherit (pkgs) lib; + esUrl = "http://localhost:9200"; mkElkTest = name : elk : @@ -215,38 +218,40 @@ let '! curl --silent --show-error "${esUrl}/_cat/indices" | grep logstash | grep ^' ) ''; - }) {}; -in pkgs.lib.mapAttrs mkElkTest { - ELK-6 = - if enableUnfree - then { + }) { inherit pkgs system; }; +in { + ELK-6 = mkElkTest "elk-6-oss" { + name = "elk-6-oss"; + elasticsearch = pkgs.elasticsearch6-oss; + logstash = pkgs.logstash6-oss; + kibana = pkgs.kibana6-oss; + journalbeat = pkgs.journalbeat6; + metricbeat = pkgs.metricbeat6; + }; + # We currently only package upstream binaries. + # Feel free to package an SSPL licensed source-based package! + # ELK-7 = mkElkTest "elk-7-oss" { + # name = "elk-7"; + # elasticsearch = pkgs.elasticsearch7-oss; + # logstash = pkgs.logstash7-oss; + # kibana = pkgs.kibana7-oss; + # journalbeat = pkgs.journalbeat7; + # metricbeat = pkgs.metricbeat7; + # }; + unfree = lib.dontRecurseIntoAttrs { + ELK-6 = mkElkTest "elk-6" { elasticsearch = pkgs.elasticsearch6; logstash = pkgs.logstash6; kibana = pkgs.kibana6; journalbeat = pkgs.journalbeat6; metricbeat = pkgs.metricbeat6; - } - else { - elasticsearch = pkgs.elasticsearch6-oss; - logstash = pkgs.logstash6-oss; - kibana = pkgs.kibana6-oss; - journalbeat = pkgs.journalbeat6; - metricbeat = pkgs.metricbeat6; }; - ELK-7 = - if enableUnfree - then { + ELK-7 = mkElkTest "elk-7" { elasticsearch = pkgs.elasticsearch7; logstash = pkgs.logstash7; kibana = pkgs.kibana7; journalbeat = pkgs.journalbeat7; metricbeat = pkgs.metricbeat7; - } - else { - elasticsearch = pkgs.elasticsearch7-oss; - logstash = pkgs.logstash7-oss; - kibana = pkgs.kibana7-oss; - journalbeat = pkgs.journalbeat7; - metricbeat = pkgs.metricbeat7; }; + }; } diff --git a/nixos/tests/emacs-daemon.nix b/nixos/tests/emacs-daemon.nix index 58bcd095990a..e12da56021da 100644 --- a/nixos/tests/emacs-daemon.nix +++ b/nixos/tests/emacs-daemon.nix @@ -33,7 +33,7 @@ import ./make-test-python.nix ({ pkgs, ...} : { ) # connects to the daemon - machine.succeed("emacsclient --create-frame $EDITOR &") + machine.succeed("emacsclient --create-frame $EDITOR >&2 &") # checks that Emacs shows the edited filename machine.wait_for_text("emacseditor") diff --git a/nixos/tests/enlightenment.nix b/nixos/tests/enlightenment.nix index 4623574ce92e..c5f0e208906b 100644 --- a/nixos/tests/enlightenment.nix +++ b/nixos/tests/enlightenment.nix @@ -88,7 +88,7 @@ import ./make-test-python.nix ({ pkgs, ...} : machine.screenshot("wizard12") with subtest("Run Terminology"): - machine.succeed("terminology &") + machine.succeed("terminology >&2 &") machine.sleep(5) machine.send_chars("ls --color -alF\n") machine.sleep(2) diff --git a/nixos/tests/etesync-dav.nix b/nixos/tests/etesync-dav.nix index da5c056f5349..6a747e23f76f 100644 --- a/nixos/tests/etesync-dav.nix +++ b/nixos/tests/etesync-dav.nix @@ -13,7 +13,7 @@ import ./make-test-python.nix ({ pkgs, ... }: { '' machine.wait_for_unit("multi-user.target") machine.succeed("etesync-dav --version") - machine.execute("etesync-dav &") + machine.execute("etesync-dav >&2 &") machine.wait_for_open_port(37358) with subtest("Check that the web interface is accessible"): assert "Add User" in machine.succeed("curl -s http://localhost:37358/.web/add/") diff --git a/nixos/tests/firefox.nix b/nixos/tests/firefox.nix index dcaf369b62bd..7216ad43b8e9 100644 --- a/nixos/tests/firefox.nix +++ b/nixos/tests/firefox.nix @@ -91,7 +91,7 @@ import ./make-test-python.nix ({ pkgs, firefoxPackage, ... }: { with subtest("Wait until Firefox has finished loading the Valgrind docs page"): machine.execute( - "xterm -e 'firefox file://${pkgs.valgrind.doc}/share/doc/valgrind/html/index.html' &" + "xterm -e 'firefox file://${pkgs.valgrind.doc}/share/doc/valgrind/html/index.html' >&2 &" ) machine.wait_for_window("Valgrind") machine.sleep(40) @@ -99,7 +99,7 @@ import ./make-test-python.nix ({ pkgs, firefoxPackage, ... }: { with subtest("Check whether Firefox can play sound"): with audio_recording(machine): machine.succeed( - "firefox file://${pkgs.sound-theme-freedesktop}/share/sounds/freedesktop/stereo/phone-incoming-call.oga &" + "firefox file://${pkgs.sound-theme-freedesktop}/share/sounds/freedesktop/stereo/phone-incoming-call.oga >&2 &" ) wait_for_sound(machine) machine.copy_from_vm("/tmp/record.wav") diff --git a/nixos/tests/ft2-clone.nix b/nixos/tests/ft2-clone.nix index c877054234ec..71eda43e2b24 100644 --- a/nixos/tests/ft2-clone.nix +++ b/nixos/tests/ft2-clone.nix @@ -22,7 +22,7 @@ import ./make-test-python.nix ({ pkgs, ... }: { # Add a dummy sound card, or the program won't start machine.execute("modprobe snd-dummy") - machine.execute("ft2-clone &") + machine.execute("ft2-clone >&2 &") machine.wait_for_window(r"Fasttracker") machine.sleep(5) diff --git a/nixos/tests/hadoop/hadoop.nix b/nixos/tests/hadoop/hadoop.nix index 46dfac26e065..b4ed0e17a852 100644 --- a/nixos/tests/hadoop/hadoop.nix +++ b/nixos/tests/hadoop/hadoop.nix @@ -1,70 +1,230 @@ +# This test is very comprehensive. It tests whether all hadoop services work well with each other. +# Run this when updating the Hadoop package or making significant changes to the hadoop module. +# For a more basic test, see hdfs.nix and yarn.nix import ../make-test-python.nix ({pkgs, ...}: { nodes = let package = pkgs.hadoop; coreSite = { - "fs.defaultFS" = "hdfs://master"; + "fs.defaultFS" = "hdfs://ns1"; + }; + hdfsSite = { + "dfs.namenode.rpc-bind-host" = "0.0.0.0"; + "dfs.namenode.http-bind-host" = "0.0.0.0"; + "dfs.namenode.servicerpc-bind-host" = "0.0.0.0"; + + # HA Quorum Journal Manager configuration + "dfs.nameservices" = "ns1"; + "dfs.ha.namenodes.ns1" = "nn1,nn2"; + "dfs.namenode.shared.edits.dir.ns1.nn1" = "qjournal://jn1:8485;jn2:8485;jn3:8485/ns1"; + "dfs.namenode.shared.edits.dir.ns1.nn2" = "qjournal://jn1:8485;jn2:8485;jn3:8485/ns1"; + "dfs.namenode.rpc-address.ns1.nn1" = "nn1:8020"; + "dfs.namenode.rpc-address.ns1.nn2" = "nn2:8020"; + "dfs.namenode.servicerpc-address.ns1.nn1" = "nn1:8022"; + "dfs.namenode.servicerpc-address.ns1.nn2" = "nn2:8022"; + "dfs.namenode.http-address.ns1.nn1" = "nn1:9870"; + "dfs.namenode.http-address.ns1.nn2" = "nn2:9870"; + + # Automatic failover configuration + "dfs.client.failover.proxy.provider.ns1" = "org.apache.hadoop.hdfs.server.namenode.ha.ConfiguredFailoverProxyProvider"; + "dfs.ha.automatic-failover.enabled.ns1" = "true"; + "dfs.ha.fencing.methods" = "shell(true)"; + "ha.zookeeper.quorum" = "zk1:2181"; + }; + yarnSiteHA = { + "yarn.resourcemanager.zk-address" = "zk1:2181"; + "yarn.resourcemanager.ha.enabled" = "true"; + "yarn.resourcemanager.ha.rm-ids" = "rm1,rm2"; + "yarn.resourcemanager.hostname.rm1" = "rm1"; + "yarn.resourcemanager.hostname.rm2" = "rm2"; + "yarn.resourcemanager.ha.automatic-failover.enabled" = "true"; + "yarn.resourcemanager.cluster-id" = "cluster1"; + # yarn.resourcemanager.webapp.address needs to be defined even though yarn.resourcemanager.hostname is set. This shouldn't be necessary, but there's a bug in + # hadoop-yarn-project/hadoop-yarn/hadoop-yarn-server/hadoop-yarn-server-web-proxy/src/main/java/org/apache/hadoop/yarn/server/webproxy/amfilter/AmFilterInitializer.java:70 + # that causes AM containers to fail otherwise. + "yarn.resourcemanager.webapp.address.rm1" = "rm1:8088"; + "yarn.resourcemanager.webapp.address.rm2" = "rm2:8088"; }; in { - master = {pkgs, options, ...}: { - services.hadoop = { - inherit package coreSite; - hdfs.namenode.enabled = true; - yarn.resourcemanager.enabled = true; - }; - virtualisation.memorySize = 1024; + zk1 = { ... }: { + services.zookeeper.enable = true; + networking.firewall.allowedTCPPorts = [ 2181 ]; }; - worker = {pkgs, options, ...}: { + # HDFS cluster + nn1 = {pkgs, options, ...}: { services.hadoop = { - inherit package coreSite; - hdfs.datanode.enabled = true; - yarn.nodemanager.enabled = true; - yarnSite = options.services.hadoop.yarnSite.default // { - "yarn.resourcemanager.hostname" = "master"; - }; + inherit package coreSite hdfsSite; + hdfs.namenode.enable = true; + hdfs.zkfc.enable = true; }; + }; + nn2 = {pkgs, options, ...}: { + services.hadoop = { + inherit package coreSite hdfsSite; + hdfs.namenode.enable = true; + hdfs.zkfc.enable = true; + }; + }; + + jn1 = {pkgs, options, ...}: { + services.hadoop = { + inherit package coreSite hdfsSite; + hdfs.journalnode.enable = true; + }; + }; + jn2 = {pkgs, options, ...}: { + services.hadoop = { + inherit package coreSite hdfsSite; + hdfs.journalnode.enable = true; + }; + }; + jn3 = {pkgs, options, ...}: { + services.hadoop = { + inherit package coreSite hdfsSite; + hdfs.journalnode.enable = true; + }; + }; + + dn1 = {pkgs, options, ...}: { + services.hadoop = { + inherit package coreSite hdfsSite; + hdfs.datanode.enable = true; + }; + }; + + # YARN cluster + rm1 = {pkgs, options, ...}: { + virtualisation.memorySize = 1024; + services.hadoop = { + inherit package coreSite hdfsSite; + yarnSite = options.services.hadoop.yarnSite.default // yarnSiteHA; + yarn.resourcemanager.enable = true; + }; + }; + rm2 = {pkgs, options, ...}: { + virtualisation.memorySize = 1024; + services.hadoop = { + inherit package coreSite hdfsSite; + yarnSite = options.services.hadoop.yarnSite.default // yarnSiteHA; + yarn.resourcemanager.enable = true; + }; + }; + nm1 = {pkgs, options, ...}: { virtualisation.memorySize = 2048; + services.hadoop = { + inherit package coreSite hdfsSite; + yarnSite = options.services.hadoop.yarnSite.default // yarnSiteHA; + yarn.nodemanager.enable = true; + }; }; }; testScript = '' start_all() - master.wait_for_unit("network.target") - master.wait_for_unit("hdfs-namenode") + #### HDFS tests #### - master.wait_for_open_port(8020) - master.wait_for_open_port(9870) + zk1.wait_for_unit("network.target") + jn1.wait_for_unit("network.target") + jn2.wait_for_unit("network.target") + jn3.wait_for_unit("network.target") + nn1.wait_for_unit("network.target") + nn2.wait_for_unit("network.target") + dn1.wait_for_unit("network.target") - worker.wait_for_unit("network.target") - worker.wait_for_unit("hdfs-datanode") - worker.wait_for_open_port(9864) - worker.wait_for_open_port(9866) - worker.wait_for_open_port(9867) + zk1.wait_for_unit("zookeeper") + jn1.wait_for_unit("hdfs-journalnode") + jn2.wait_for_unit("hdfs-journalnode") + jn3.wait_for_unit("hdfs-journalnode") - master.succeed("curl -f http://worker:9864") - worker.succeed("curl -f http://master:9870") + zk1.wait_for_open_port(2181) + jn1.wait_for_open_port(8480) + jn1.wait_for_open_port(8485) + jn2.wait_for_open_port(8480) + jn2.wait_for_open_port(8485) - worker.succeed("sudo -u hdfs hdfs dfsadmin -safemode wait") + # Namenodes must be stopped before initializing the cluster + nn1.succeed("systemctl stop hdfs-namenode") + nn2.succeed("systemctl stop hdfs-namenode") + nn1.succeed("systemctl stop hdfs-zkfc") + nn2.succeed("systemctl stop hdfs-zkfc") - master.wait_for_unit("yarn-resourcemanager") + # Initialize zookeeper for failover controller + nn1.succeed("sudo -u hdfs hdfs zkfc -formatZK 2>&1 | systemd-cat") - master.wait_for_open_port(8030) - master.wait_for_open_port(8031) - master.wait_for_open_port(8032) - master.wait_for_open_port(8088) - worker.succeed("curl -f http://master:8088") + # Format NN1 and start it + nn1.succeed("sudo -u hdfs hadoop namenode -format 2>&1 | systemd-cat") + nn1.succeed("systemctl start hdfs-namenode") + nn1.wait_for_open_port(9870) + nn1.wait_for_open_port(8022) + nn1.wait_for_open_port(8020) - worker.wait_for_unit("yarn-nodemanager") - worker.wait_for_open_port(8042) - worker.wait_for_open_port(8040) - master.succeed("curl -f http://worker:8042") + # Bootstrap NN2 from NN1 and start it + nn2.succeed("sudo -u hdfs hdfs namenode -bootstrapStandby 2>&1 | systemd-cat") + nn2.succeed("systemctl start hdfs-namenode") + nn2.wait_for_open_port(9870) + nn2.wait_for_open_port(8022) + nn2.wait_for_open_port(8020) + nn1.succeed("netstat -tulpne | systemd-cat") - assert "Total Nodes:1" in worker.succeed("yarn node -list") + # Start failover controllers + nn1.succeed("systemctl start hdfs-zkfc") + nn2.succeed("systemctl start hdfs-zkfc") - assert "Estimated value of Pi is" in worker.succeed("HADOOP_USER_NAME=hdfs yarn jar $(readlink $(which yarn) | sed -r 's~bin/yarn~lib/hadoop-*/share/hadoop/mapreduce/hadoop-mapreduce-examples-*.jar~g') pi 2 10") - assert "SUCCEEDED" in worker.succeed("yarn application -list -appStates FINISHED") - worker.succeed("sudo -u hdfs hdfs dfs -ls / | systemd-cat") + # DN should have started by now, but confirm anyway + dn1.wait_for_unit("hdfs-datanode") + # Print states of namenodes + dn1.succeed("sudo -u hdfs hdfs haadmin -getAllServiceState | systemd-cat") + # Wait for cluster to exit safemode + dn1.succeed("sudo -u hdfs hdfs dfsadmin -safemode wait") + dn1.succeed("sudo -u hdfs hdfs haadmin -getAllServiceState | systemd-cat") + # test R/W + dn1.succeed("echo testfilecontents | sudo -u hdfs hdfs dfs -put - /testfile") + assert "testfilecontents" in dn1.succeed("sudo -u hdfs hdfs dfs -cat /testfile") + + # Test NN failover + nn1.succeed("systemctl stop hdfs-namenode") + assert "active" in dn1.succeed("sudo -u hdfs hdfs haadmin -getAllServiceState") + dn1.succeed("sudo -u hdfs hdfs haadmin -getAllServiceState | systemd-cat") + assert "testfilecontents" in dn1.succeed("sudo -u hdfs hdfs dfs -cat /testfile") + + nn1.succeed("systemctl start hdfs-namenode") + nn1.wait_for_open_port(9870) + nn1.wait_for_open_port(8022) + nn1.wait_for_open_port(8020) + assert "standby" in dn1.succeed("sudo -u hdfs hdfs haadmin -getAllServiceState") + dn1.succeed("sudo -u hdfs hdfs haadmin -getAllServiceState | systemd-cat") + + #### YARN tests #### + + rm1.wait_for_unit("network.target") + rm2.wait_for_unit("network.target") + nm1.wait_for_unit("network.target") + + rm1.wait_for_unit("yarn-resourcemanager") + rm1.wait_for_open_port(8088) + rm2.wait_for_unit("yarn-resourcemanager") + rm2.wait_for_open_port(8088) + + nm1.wait_for_unit("yarn-nodemanager") + nm1.wait_for_open_port(8042) + nm1.wait_for_open_port(8040) + nm1.wait_until_succeeds("yarn node -list | grep Nodes:1") + nm1.succeed("sudo -u yarn yarn rmadmin -getAllServiceState | systemd-cat") + nm1.succeed("sudo -u yarn yarn node -list | systemd-cat") + + # Test RM failover + rm1.succeed("systemctl stop yarn-resourcemanager") + assert "standby" not in nm1.succeed("sudo -u yarn yarn rmadmin -getAllServiceState") + nm1.succeed("sudo -u yarn yarn rmadmin -getAllServiceState | systemd-cat") + rm1.succeed("systemctl start yarn-resourcemanager") + rm1.wait_for_unit("yarn-resourcemanager") + rm1.wait_for_open_port(8088) + assert "standby" in nm1.succeed("sudo -u yarn yarn rmadmin -getAllServiceState") + nm1.succeed("sudo -u yarn yarn rmadmin -getAllServiceState | systemd-cat") + + assert "Estimated value of Pi is" in nm1.succeed("HADOOP_USER_NAME=hdfs yarn jar $(readlink $(which yarn) | sed -r 's~bin/yarn~lib/hadoop-*/share/hadoop/mapreduce/hadoop-mapreduce-examples-*.jar~g') pi 2 10") + assert "SUCCEEDED" in nm1.succeed("yarn application -list -appStates FINISHED") ''; - }) +}) diff --git a/nixos/tests/hadoop/hdfs.nix b/nixos/tests/hadoop/hdfs.nix index f5907185c039..360dbd60ed27 100644 --- a/nixos/tests/hadoop/hdfs.nix +++ b/nixos/tests/hadoop/hdfs.nix @@ -1,36 +1,34 @@ +# Test a minimal HDFS cluster with no HA import ../make-test-python.nix ({...}: { nodes = { namenode = {pkgs, ...}: { + virtualisation.memorySize = 1024; services.hadoop = { package = pkgs.hadoop; - hdfs.namenode.enabled = true; + hdfs = { + namenode = { + enable = true; + formatOnInit = true; + }; + httpfs.enable = true; + }; coreSite = { "fs.defaultFS" = "hdfs://namenode:8020"; - }; - hdfsSite = { - "dfs.replication" = 1; - "dfs.namenode.rpc-bind-host" = "0.0.0.0"; - "dfs.namenode.http-bind-host" = "0.0.0.0"; + "hadoop.proxyuser.httpfs.groups" = "*"; + "hadoop.proxyuser.httpfs.hosts" = "*"; }; }; - networking.firewall.allowedTCPPorts = [ - 9870 # namenode.http-address - 8020 # namenode.rpc-address - ]; }; datanode = {pkgs, ...}: { services.hadoop = { package = pkgs.hadoop; - hdfs.datanode.enabled = true; + hdfs.datanode.enable = true; coreSite = { "fs.defaultFS" = "hdfs://namenode:8020"; + "hadoop.proxyuser.httpfs.groups" = "*"; + "hadoop.proxyuser.httpfs.hosts" = "*"; }; }; - networking.firewall.allowedTCPPorts = [ - 9864 # datanode.http.address - 9866 # datanode.address - 9867 # datanode.ipc.address - ]; }; }; @@ -50,5 +48,13 @@ import ../make-test-python.nix ({...}: { namenode.succeed("curl -f http://namenode:9870") datanode.succeed("curl -f http://datanode:9864") + + datanode.succeed("sudo -u hdfs hdfs dfsadmin -safemode wait") + datanode.succeed("echo testfilecontents | sudo -u hdfs hdfs dfs -put - /testfile") + assert "testfilecontents" in datanode.succeed("sudo -u hdfs hdfs dfs -cat /testfile") + + namenode.wait_for_unit("hdfs-httpfs") + namenode.wait_for_open_port(14000) + assert "testfilecontents" in datanode.succeed("curl -f \"http://namenode:14000/webhdfs/v1/testfile?user.name=hdfs&op=OPEN\" 2>&1") ''; }) diff --git a/nixos/tests/hadoop/yarn.nix b/nixos/tests/hadoop/yarn.nix index fbbb293eecd6..09bdb35791c7 100644 --- a/nixos/tests/hadoop/yarn.nix +++ b/nixos/tests/hadoop/yarn.nix @@ -1,28 +1,20 @@ +# This only tests if YARN is able to start its services import ../make-test-python.nix ({...}: { nodes = { resourcemanager = {pkgs, ...}: { services.hadoop.package = pkgs.hadoop; - services.hadoop.yarn.resourcemanager.enabled = true; + services.hadoop.yarn.resourcemanager.enable = true; services.hadoop.yarnSite = { "yarn.resourcemanager.scheduler.class" = "org.apache.hadoop.yarn.server.resourcemanager.scheduler.fifo.FifoScheduler"; }; - networking.firewall.allowedTCPPorts = [ - 8088 # resourcemanager.webapp.address - 8031 # resourcemanager.resource-tracker.address - ]; }; nodemanager = {pkgs, ...}: { services.hadoop.package = pkgs.hadoop; - services.hadoop.yarn.nodemanager.enabled = true; + services.hadoop.yarn.nodemanager.enable = true; services.hadoop.yarnSite = { "yarn.resourcemanager.hostname" = "resourcemanager"; "yarn.nodemanager.log-dirs" = "/tmp/userlogs"; - "yarn.nodemanager.address" = "0.0.0.0:8041"; }; - networking.firewall.allowedTCPPorts = [ - 8042 # nodemanager.webapp.address - 8041 # nodemanager.address - ]; }; }; @@ -38,7 +30,6 @@ import ../make-test-python.nix ({...}: { nodemanager.wait_for_unit("yarn-nodemanager") nodemanager.wait_for_unit("network.target") nodemanager.wait_for_open_port(8042) - nodemanager.wait_for_open_port(8041) resourcemanager.succeed("curl -f http://localhost:8088") nodemanager.succeed("curl -f http://localhost:8042") diff --git a/nixos/tests/handbrake.nix b/nixos/tests/handbrake.nix index c92fb5db7d6c..d2d41b372be1 100644 --- a/nixos/tests/handbrake.nix +++ b/nixos/tests/handbrake.nix @@ -1,11 +1,15 @@ import ./make-test-python.nix ({ pkgs, ... }: + let # Download Big Buck Bunny example, licensed under CC Attribution 3.0. testMkv = pkgs.fetchurl { url = "https://github.com/Matroska-Org/matroska-test-files/blob/cf0792be144ac470c4b8052cfe19bb691993e3a2/test_files/test1.mkv?raw=true"; sha256 = "1hfxbbgxwfkzv85pvpvx55a72qsd0hxjbm9hkl5r3590zw4s75h9"; + name = "test1.mkv"; }; -in { + +in +{ name = "handbrake"; meta = { @@ -21,11 +25,9 @@ in { # only takes a few seconds. start_all() - machine.succeed( - "HandBrakeCLI -i ${testMkv} -o test.mp4 -e x264 -q 20 -B 160" - ) - machine.succeed( - "HandBrakeCLI -i ${testMkv} -o test.mkv -e x264 -q 20 -B 160" - ) + machine.succeed("HandBrakeCLI -i ${testMkv} -o test.mp4 -e x264 -q 20 -B 160") + machine.succeed("test -e test.mp4") + machine.succeed("HandBrakeCLI -i ${testMkv} -o test.mkv -e x264 -q 20 -B 160") + machine.succeed("test -e test.mkv") ''; }) diff --git a/nixos/tests/hibernate.nix b/nixos/tests/hibernate.nix index 508e7aa64c0d..4f05b99a5a11 100644 --- a/nixos/tests/hibernate.nix +++ b/nixos/tests/hibernate.nix @@ -110,7 +110,7 @@ in makeTest { ) # Hibernate machine - hibernate.execute("systemctl hibernate &", check_return=False) + hibernate.execute("systemctl hibernate >&2 &", check_return=False) hibernate.wait_for_shutdown() # Restore machine from hibernation, validate our ramfs file is there. diff --git a/nixos/tests/installer.nix b/nixos/tests/installer.nix index 48f0f5934255..73dc676ca32d 100644 --- a/nixos/tests/installer.nix +++ b/nixos/tests/installer.nix @@ -184,11 +184,12 @@ let with subtest("Check whether nixos-rebuild works"): machine.succeed("nixos-rebuild switch >&2") - with subtest("Test nixos-option"): - kernel_modules = machine.succeed("nixos-option boot.initrd.kernelModules") - assert "virtio_console" in kernel_modules - assert "List of modules" in kernel_modules - assert "qemu-guest.nix" in kernel_modules + # FIXME: Nix 2.4 broke nixos-option, someone has to fix it. + # with subtest("Test nixos-option"): + # kernel_modules = machine.succeed("nixos-option boot.initrd.kernelModules") + # assert "virtio_console" in kernel_modules + # assert "List of modules" in kernel_modules + # assert "qemu-guest.nix" in kernel_modules machine.shutdown() diff --git a/nixos/tests/keepassxc.nix b/nixos/tests/keepassxc.nix index 98902187f6ac..685a200b3187 100644 --- a/nixos/tests/keepassxc.nix +++ b/nixos/tests/keepassxc.nix @@ -26,7 +26,7 @@ import ./make-test-python.nix ({ pkgs, ...} : machine.wait_for_x() # start KeePassXC window - machine.execute("su - alice -c keepassxc &") + machine.execute("su - alice -c keepassxc >&2 &") machine.wait_for_text("KeePassXC ${pkgs.keepassxc.version}") machine.screenshot("KeePassXC") diff --git a/nixos/tests/kexec.nix b/nixos/tests/kexec.nix index 036b9cab04f2..b0d072167fad 100644 --- a/nixos/tests/kexec.nix +++ b/nixos/tests/kexec.nix @@ -18,7 +18,7 @@ import ./make-test-python.nix ({ pkgs, lib, ...} : { testScript = '' machine.wait_for_unit("multi-user.target") - machine.execute("systemctl kexec &", check_return=False) + machine.execute("systemctl kexec >&2 &", check_return=False) machine.connected = False machine.wait_for_unit("multi-user.target") ''; diff --git a/nixos/tests/keymap.nix b/nixos/tests/keymap.nix index a18a05f90c6d..4306a9ae2cf9 100644 --- a/nixos/tests/keymap.nix +++ b/nixos/tests/keymap.nix @@ -46,7 +46,7 @@ let # set up process that expects all the keys to be entered machine.succeed( - "{} {} {} {} &".format( + "{} {} {} {} >&2 &".format( cmd, "${testReader}", len(inputs), diff --git a/nixos/tests/libreswan.nix b/nixos/tests/libreswan.nix index 17ae60af8eed..56ab908aed9a 100644 --- a/nixos/tests/libreswan.nix +++ b/nixos/tests/libreswan.nix @@ -89,7 +89,7 @@ in """ Sends a message as Alice to Bob """ - bob.execute("nc -lu ::0 1234 >/tmp/msg &") + bob.execute("nc -lu ::0 1234 >/tmp/msg >&2 &") alice.sleep(1) alice.succeed(f"echo '{msg}' | nc -uw 0 bob 1234") bob.succeed(f"grep '{msg}' /tmp/msg") @@ -100,7 +100,7 @@ in Starts eavesdropping on Alice and Bob """ match = "src host alice and dst host bob" - eve.execute(f"tcpdump -i br0 -c 1 -Avv {match} >/tmp/log &") + eve.execute(f"tcpdump -i br0 -c 1 -Avv {match} >/tmp/log >&2 &") start_all() @@ -120,7 +120,7 @@ in alice.succeed("ipsec verify 1>&2") with subtest("Alice and Bob can start the tunnel"): - alice.execute("ipsec auto --start tunnel &") + alice.execute("ipsec auto --start tunnel >&2 &") bob.succeed("ipsec auto --start tunnel") # apparently this is needed to "wake" the tunnel bob.execute("ping -c1 alice") diff --git a/nixos/tests/lorri/default.nix b/nixos/tests/lorri/default.nix index c33c7503993d..147ae999fdb1 100644 --- a/nixos/tests/lorri/default.nix +++ b/nixos/tests/lorri/default.nix @@ -14,7 +14,7 @@ import ../make-test-python.nix { ) # Start the daemon and wait until it is ready - machine.execute("lorri daemon > lorri.stdout 2> lorri.stderr &") + machine.execute("lorri daemon > lorri.stdout 2> lorri.stderr >&2 &") machine.wait_until_succeeds("grep --fixed-strings 'ready' lorri.stdout") # Ping the daemon diff --git a/nixos/tests/lxd-image-server.nix b/nixos/tests/lxd-image-server.nix new file mode 100644 index 000000000000..9f060fed38d8 --- /dev/null +++ b/nixos/tests/lxd-image-server.nix @@ -0,0 +1,127 @@ +import ./make-test-python.nix ({ pkgs, ...} : + +let + # Since we don't have access to the internet during the tests, we have to + # pre-fetch lxd containers beforehand. + # + # I've chosen to import Alpine Linux, because its image is turbo-tiny and, + # generally, sufficient for our tests. + alpine-meta = pkgs.fetchurl { + url = "https://tarballs.nixos.org/alpine/3.12/lxd.tar.xz"; + hash = "sha256-1tcKaO9lOkvqfmG/7FMbfAEToAuFy2YMewS8ysBKuLA="; + }; + + alpine-rootfs = pkgs.fetchurl { + url = "https://tarballs.nixos.org/alpine/3.12/rootfs.tar.xz"; + hash = "sha256-Tba9sSoaiMtQLY45u7p5DMqXTSDgs/763L/SQp0bkCA="; + }; + + lxd-config = pkgs.writeText "config.yaml" '' + storage_pools: + - name: default + driver: dir + config: + source: /var/lxd-pool + + networks: + - name: lxdbr0 + type: bridge + config: + ipv4.address: auto + ipv6.address: none + + profiles: + - name: default + devices: + eth0: + name: eth0 + network: lxdbr0 + type: nic + root: + path: / + pool: default + type: disk + ''; + + +in { + name = "lxd-image-server"; + + meta = with pkgs.lib.maintainers; { + maintainers = [ mkg20001 ]; + }; + + machine = { lib, ... }: { + virtualisation = { + cores = 2; + + memorySize = 2048; + diskSize = 4096; + + lxc.lxcfs.enable = true; + lxd.enable = true; + }; + + security.pki.certificates = [ + (builtins.readFile ./common/acme/server/ca.cert.pem) + ]; + + services.nginx = { + enable = true; + }; + + services.lxd-image-server = { + enable = true; + nginx = { + enable = true; + domain = "acme.test"; + }; + }; + + services.nginx.virtualHosts."acme.test" = { + enableACME = false; + sslCertificate = ./common/acme/server/acme.test.cert.pem; + sslCertificateKey = ./common/acme/server/acme.test.key.pem; + }; + + networking.hosts = { + "::1" = [ "acme.test" ]; + }; + }; + + testScript = '' + machine.wait_for_unit("sockets.target") + machine.wait_for_unit("lxd.service") + machine.wait_for_file("/var/lib/lxd/unix.socket") + + # It takes additional second for lxd to settle + machine.sleep(1) + + # lxd expects the pool's directory to already exist + machine.succeed("mkdir /var/lxd-pool") + + + machine.succeed( + "cat ${lxd-config} | lxd init --preseed" + ) + + machine.succeed( + "lxc image import ${alpine-meta} ${alpine-rootfs} --alias alpine" + ) + + loc = "/var/www/simplestreams/images/iats/alpine/amd64/default/v1" + + with subtest("push image to server"): + machine.succeed("lxc launch alpine test") + machine.succeed("lxc stop test") + machine.succeed("lxc publish --public test --alias=testimg") + machine.succeed("lxc image export testimg") + machine.succeed("ls >&2") + machine.succeed("mkdir -p " + loc) + machine.succeed("mv *.tar.gz " + loc) + + with subtest("pull image from server"): + machine.succeed("lxc remote add img https://acme.test --protocol=simplestreams") + machine.succeed("lxc image list img: >&2") + ''; +}) diff --git a/nixos/tests/lxd-image.nix b/nixos/tests/lxd-image.nix new file mode 100644 index 000000000000..bc8274eebedd --- /dev/null +++ b/nixos/tests/lxd-image.nix @@ -0,0 +1,91 @@ +# This test ensures that the nixOS lxd images builds and functions properly +# It has been extracted from `lxd.nix` to seperate failures of just the image and the lxd software + +import ./make-test-python.nix ({ pkgs, ...} : let + release = import ../release.nix { + /* configuration = { + environment.systemPackages = with pkgs; [ stdenv ]; # inject stdenv so rebuild test works + }; */ + }; + + metadata = release.lxdMeta.${pkgs.system}; + image = release.lxdImage.${pkgs.system}; + + lxd-config = pkgs.writeText "config.yaml" '' + storage_pools: + - name: default + driver: dir + config: + source: /var/lxd-pool + + networks: + - name: lxdbr0 + type: bridge + config: + ipv4.address: auto + ipv6.address: none + + profiles: + - name: default + devices: + eth0: + name: eth0 + network: lxdbr0 + type: nic + root: + path: / + pool: default + type: disk + ''; +in { + name = "lxd-image"; + + meta = with pkgs.lib.maintainers; { + maintainers = [ mkg20001 ]; + }; + + machine = { lib, ... }: { + virtualisation = { + # OOMs otherwise + memorySize = 1024; + # disk full otherwise + diskSize = 2048; + + lxc.lxcfs.enable = true; + lxd.enable = true; + }; + }; + + testScript = '' + machine.wait_for_unit("sockets.target") + machine.wait_for_unit("lxd.service") + machine.wait_for_file("/var/lib/lxd/unix.socket") + + # It takes additional second for lxd to settle + machine.sleep(1) + + # lxd expects the pool's directory to already exist + machine.succeed("mkdir /var/lxd-pool") + + machine.succeed( + "cat ${lxd-config} | lxd init --preseed" + ) + + # TODO: test custom built container aswell + + with subtest("importing container works"): + machine.succeed("lxc image import ${metadata}/*/*.tar.xz ${image}/*/*.tar.xz --alias nixos") + + with subtest("launching container works"): + machine.succeed("lxc launch nixos machine -c security.nesting=true") + # make sure machine boots up properly + machine.sleep(5) + + with subtest("container shell works"): + machine.succeed("echo true | lxc exec machine /run/current-system/sw/bin/bash -") + machine.succeed("lxc exec machine /run/current-system/sw/bin/true") + + # with subtest("rebuilding works"): + # machine.succeed("lxc exec machine /run/current-system/sw/bin/nixos-rebuild switch") + ''; +}) diff --git a/nixos/tests/lxd.nix b/nixos/tests/lxd.nix index 889ca9598e3f..1a3b84a85cf6 100644 --- a/nixos/tests/lxd.nix +++ b/nixos/tests/lxd.nix @@ -133,9 +133,5 @@ in { ) machine.succeed("lxc delete -f test") - - with subtest("Unless explicitly changed, lxd leans on iptables"): - machine.succeed("lsmod | grep ip_tables") - machine.fail("lsmod | grep nf_tables") ''; }) diff --git a/nixos/tests/magic-wormhole-mailbox-server.nix b/nixos/tests/magic-wormhole-mailbox-server.nix index afdf7124fdc5..54088ac60f28 100644 --- a/nixos/tests/magic-wormhole-mailbox-server.nix +++ b/nixos/tests/magic-wormhole-mailbox-server.nix @@ -29,7 +29,7 @@ import ./make-test-python.nix ({ pkgs, ... }: { # Create a secret file and send it to Bob client_alice.succeed("echo mysecret > secretfile") - client_alice.succeed("wormhole --relay-url=ws://server:4000/v1 send -0 secretfile &") + client_alice.succeed("wormhole --relay-url=ws://server:4000/v1 send -0 secretfile >&2 &") # Retrieve a secret file from Alice and check its content client_bob.succeed("wormhole --relay-url=ws://server:4000/v1 receive -0 --accept-file") diff --git a/nixos/tests/matrix-appservice-irc.nix b/nixos/tests/matrix-appservice-irc.nix index 79b07ef83c57..e1da410af060 100644 --- a/nixos/tests/matrix-appservice-irc.nix +++ b/nixos/tests/matrix-appservice-irc.nix @@ -25,7 +25,7 @@ import ./make-test-python.nix ({ pkgs, ... }: "bind_address" = ""; "port" = 8448; "resources" = [ - { "compress" = true; "names" = [ "client" "webclient" ]; } + { "compress" = true; "names" = [ "client" ]; } { "compress" = false; "names" = [ "federation" ]; } ]; "tls" = false; @@ -85,52 +85,108 @@ import ./make-test-python.nix ({ pkgs, ... }: client = { pkgs, ... }: { environment.systemPackages = [ (pkgs.writers.writePython3Bin "do_test" - { libraries = [ pkgs.python3Packages.matrix-client ]; } '' - import socket - from matrix_client.client import MatrixClient - from time import sleep + { + libraries = [ pkgs.python3Packages.matrix-nio ]; + flakeIgnore = [ + # We don't live in the dark ages anymore. + # Languages like Python that are whitespace heavy will overrun + # 79 characters.. + "E501" + ]; + } '' + import sys + import socket + import functools + from time import sleep + import asyncio - matrix = MatrixClient("${homeserverUrl}") - matrix.register_with_password(username="alice", password="foobar") - - irc = socket.socket(socket.AF_INET, socket.SOCK_STREAM) - irc.connect(("ircd", 6667)) - irc.setsockopt(socket.IPPROTO_TCP, socket.TCP_NODELAY, 1) - irc.send(b"USER bob bob bob :bob\n") - irc.send(b"NICK bob\n") - - m_room = matrix.join_room("#irc_#test:homeserver") - irc.send(b"JOIN #test\n") - - # plenty of time for the joins to happen - sleep(10) - - m_room.send_text("hi from matrix") - irc.send(b"PRIVMSG #test :hi from irc \r\n") - - print("Waiting for irc message...") - while True: - buf = irc.recv(10000) - if b"hi from matrix" in buf: - break - - print("Waiting for matrix message...") + from nio import AsyncClient, RoomMessageText, JoinResponse - def callback(room, e): - if "hi from irc" in e['content']['body']: - exit(0) + async def matrix_room_message_text_callback(matrix: AsyncClient, msg: str, _r, e): + print("Received matrix text message: ", e) + if msg in e.body: + print("Received hi from IRC") + await matrix.close() + exit(0) # Actual exit point - m_room.add_listener(callback, "m.room.message") - matrix.listen_forever() - '' + class IRC: + def __init__(self): + sock = socket.socket(socket.AF_INET, socket.SOCK_STREAM) + sock.connect(("ircd", 6667)) + sock.setsockopt(socket.IPPROTO_TCP, socket.TCP_NODELAY, 1) + sock.send(b"USER bob bob bob :bob\n") + sock.send(b"NICK bob\n") + self.sock = sock + + def join(self, room: str): + self.sock.send(f"JOIN {room}\n".encode()) + + def privmsg(self, room: str, msg: str): + self.sock.send(f"PRIVMSG {room} :{msg}\n".encode()) + + def expect_msg(self, body: str): + buffer = "" + while True: + buf = self.sock.recv(1024).decode() + buffer += buf + if body in buffer: + return + + + async def run(homeserver: str): + irc = IRC() + + matrix = AsyncClient(homeserver) + response = await matrix.register("alice", "foobar") + print("Matrix register response: ", response) + + response = await matrix.join("#irc_#test:homeserver") + print("Matrix join room response:", response) + assert isinstance(response, JoinResponse) + room_id = response.room_id + + irc.join("#test") + # FIXME: what are we waiting on here? Matrix? IRC? Both? + # 10s seem bad for busy hydra machines. + sleep(10) + + # Exchange messages + print("Sending text message to matrix room") + response = await matrix.room_send( + room_id=room_id, + message_type="m.room.message", + content={"msgtype": "m.text", "body": "hi from matrix"}, + ) + print("Matrix room send response: ", response) + irc.privmsg("#test", "hi from irc") + + print("Waiting for the matrix message to appear on the IRC side...") + irc.expect_msg("hi from matrix") + + callback = functools.partial( + matrix_room_message_text_callback, matrix, "hi from irc" + ) + matrix.add_event_callback(callback, RoomMessageText) + + print("Waiting for matrix message...") + await matrix.sync_forever() + + exit(1) # Unreachable + + + if __name__ == "__main__": + asyncio.run(run(sys.argv[1])) + '' ) ]; }; }; testScript = '' + import pathlib + start_all() ircd.wait_for_unit("ngircd.service") @@ -156,7 +212,6 @@ import ./make-test-python.nix ({ pkgs, ... }: homeserver.wait_for_open_port(8448) with subtest("ensure messages can be exchanged"): - client.succeed("do_test") + client.succeed("do_test ${homeserverUrl} >&2") ''; - }) diff --git a/nixos/tests/matrix/mjolnir.nix b/nixos/tests/matrix/mjolnir.nix new file mode 100644 index 000000000000..bb55f6f5440b --- /dev/null +++ b/nixos/tests/matrix/mjolnir.nix @@ -0,0 +1,165 @@ +import ../make-test-python.nix ( + { pkgs, ... }: + let + # Set up SSL certs for Synapse to be happy. + runWithOpenSSL = file: cmd: pkgs.runCommand file + { + buildInputs = [ pkgs.openssl ]; + } + cmd; + + ca_key = runWithOpenSSL "ca-key.pem" "openssl genrsa -out $out 2048"; + ca_pem = runWithOpenSSL "ca.pem" '' + openssl req \ + -x509 -new -nodes -key ${ca_key} \ + -days 10000 -out $out -subj "/CN=snakeoil-ca" + ''; + key = runWithOpenSSL "matrix_key.pem" "openssl genrsa -out $out 2048"; + csr = runWithOpenSSL "matrix.csr" '' + openssl req \ + -new -key ${key} \ + -out $out -subj "/CN=localhost" \ + ''; + cert = runWithOpenSSL "matrix_cert.pem" '' + openssl x509 \ + -req -in ${csr} \ + -CA ${ca_pem} -CAkey ${ca_key} \ + -CAcreateserial -out $out \ + -days 365 + ''; + in + { + name = "mjolnir"; + meta = with pkgs.lib; { + maintainers = teams.matrix.members; + }; + + nodes = { + homeserver = { pkgs, ... }: { + services.matrix-synapse = { + enable = true; + database_type = "sqlite3"; + tls_certificate_path = "${cert}"; + tls_private_key_path = "${key}"; + enable_registration = true; + registration_shared_secret = "supersecret-registration"; + + listeners = [ + # The default but tls=false + { + "bind_address" = ""; + "port" = 8448; + "resources" = [ + { "compress" = true; "names" = [ "client" "webclient" ]; } + { "compress" = false; "names" = [ "federation" ]; } + ]; + "tls" = false; + "type" = "http"; + "x_forwarded" = false; + } + ]; + }; + + networking.firewall.allowedTCPPorts = [ 8448 ]; + + environment.systemPackages = [ + (pkgs.writeShellScriptBin "register_mjolnir_user" '' + exec ${pkgs.matrix-synapse}/bin/register_new_matrix_user \ + -u mjolnir \ + -p mjolnir-password \ + --admin \ + --shared-secret supersecret-registration \ + http://localhost:8448 + '' + ) + (pkgs.writeShellScriptBin "register_moderator_user" '' + exec ${pkgs.matrix-synapse}/bin/register_new_matrix_user \ + -u moderator \ + -p moderator-password \ + --no-admin \ + --shared-secret supersecret-registration \ + http://localhost:8448 + '' + ) + ]; + }; + + mjolnir = { pkgs, ... }: { + services.mjolnir = { + enable = true; + homeserverUrl = "http://homeserver:8448"; + pantalaimon = { + enable = true; + username = "mjolnir"; + passwordFile = pkgs.writeText "password.txt" "mjolnir-password"; + }; + managementRoom = "#moderators:homeserver"; + }; + }; + + client = { pkgs, ... }: { + environment.systemPackages = [ + (pkgs.writers.writePython3Bin "create_management_room_and_invite_mjolnir" + { libraries = [ pkgs.python3Packages.matrix-nio ]; } '' + import asyncio + + from nio import ( + AsyncClient, + EnableEncryptionBuilder + ) + + + async def main() -> None: + client = AsyncClient("http://homeserver:8448", "moderator") + + await client.login("moderator-password") + + room = await client.room_create( + name="Moderators", + alias="moderators", + initial_state=[EnableEncryptionBuilder().as_dict()], + ) + + await client.join(room.room_id) + await client.room_invite(room.room_id, "@mjolnir:homeserver") + + asyncio.run(main()) + '' + ) + ]; + }; + }; + + testScript = '' + with subtest("start homeserver"): + homeserver.start() + + homeserver.wait_for_unit("matrix-synapse.service") + homeserver.wait_until_succeeds("curl --fail -L http://localhost:8448/") + + with subtest("register users"): + # register mjolnir user + homeserver.succeed("register_mjolnir_user") + # register moderator user + homeserver.succeed("register_moderator_user") + + with subtest("start mjolnir"): + mjolnir.start() + + # wait for pantalaimon to be ready + mjolnir.wait_for_unit("pantalaimon-mjolnir.service") + mjolnir.wait_for_unit("mjolnir.service") + + mjolnir.wait_until_succeeds("curl --fail -L http://localhost:8009/") + + with subtest("ensure mjolnir can be invited to the management room"): + client.start() + + client.wait_until_succeeds("curl --fail -L http://homeserver:8448/") + + client.succeed("create_management_room_and_invite_mjolnir") + + mjolnir.wait_for_console_text("Startup complete. Now monitoring rooms") + ''; + } +) diff --git a/nixos/tests/matrix/pantalaimon.nix b/nixos/tests/matrix/pantalaimon.nix new file mode 100644 index 000000000000..fcb9904b2138 --- /dev/null +++ b/nixos/tests/matrix/pantalaimon.nix @@ -0,0 +1,65 @@ +import ../make-test-python.nix ( + { pkgs, ... }: + let + pantalaimonInstanceName = "testing"; + + # Set up SSL certs for Synapse to be happy. + runWithOpenSSL = file: cmd: pkgs.runCommand file + { + buildInputs = [ pkgs.openssl ]; + } + cmd; + + ca_key = runWithOpenSSL "ca-key.pem" "openssl genrsa -out $out 2048"; + ca_pem = runWithOpenSSL "ca.pem" '' + openssl req \ + -x509 -new -nodes -key ${ca_key} \ + -days 10000 -out $out -subj "/CN=snakeoil-ca" + ''; + key = runWithOpenSSL "matrix_key.pem" "openssl genrsa -out $out 2048"; + csr = runWithOpenSSL "matrix.csr" '' + openssl req \ + -new -key ${key} \ + -out $out -subj "/CN=localhost" \ + ''; + cert = runWithOpenSSL "matrix_cert.pem" '' + openssl x509 \ + -req -in ${csr} \ + -CA ${ca_pem} -CAkey ${ca_key} \ + -CAcreateserial -out $out \ + -days 365 + ''; + in + { + name = "pantalaimon"; + meta = with pkgs.lib; { + maintainers = teams.matrix.members; + }; + + machine = { pkgs, ... }: { + services.pantalaimon-headless.instances.${pantalaimonInstanceName} = { + homeserver = "https://localhost:8448"; + listenAddress = "0.0.0.0"; + listenPort = 8888; + logLevel = "debug"; + ssl = false; + }; + + services.matrix-synapse = { + enable = true; + database_type = "sqlite3"; + tls_certificate_path = "${cert}"; + tls_private_key_path = "${key}"; + }; + }; + + testScript = '' + start_all() + machine.wait_for_unit("pantalaimon-${pantalaimonInstanceName}.service") + machine.wait_for_unit("matrix-synapse.service") + machine.wait_until_succeeds( + "curl --fail -L http://localhost:8888/" + ) + ''; + } +) diff --git a/nixos/tests/minecraft.nix b/nixos/tests/minecraft.nix index 3225ebac392a..1c34f04b4df2 100644 --- a/nixos/tests/minecraft.nix +++ b/nixos/tests/minecraft.nix @@ -20,7 +20,7 @@ import ./make-test-python.nix ({ pkgs, lib, ... }: { let user = nodes.client.config.users.users.alice; in '' client.wait_for_x() - client.execute("su - alice -c minecraft-launcher &") + client.execute("su - alice -c minecraft-launcher >&2 &") client.wait_for_text("Create a new Microsoft account") client.sleep(10) client.screenshot("launcher") diff --git a/nixos/tests/misc.nix b/nixos/tests/misc.nix index fb19b7060562..0587912c9a22 100644 --- a/nixos/tests/misc.nix +++ b/nixos/tests/misc.nix @@ -50,17 +50,18 @@ import ./make-test-python.nix ({ pkgs, ...} : rec { def get_path_info(path): - result = machine.succeed(f"nix path-info --json {path}") + result = machine.succeed(f"nix --option experimental-features nix-command path-info --json {path}") parsed = json.loads(result) return parsed with subtest("nix-db"): info = get_path_info("${foo}") + print(info) if ( info[0]["narHash"] - != "sha256:0afw0d9j1hvwiz066z93jiddc33nxg6i6qyp26vnqyglpyfivlq5" + != "sha256-BdMdnb/0eWy3EddjE83rdgzWWpQjfWPAj3zDIFMD3Ck=" ): raise Exception("narHash not set") diff --git a/nixos/tests/mosquitto.nix b/nixos/tests/mosquitto.nix index eb47e97ba04b..36cc8e3e3d9b 100644 --- a/nixos/tests/mosquitto.nix +++ b/nixos/tests/mosquitto.nix @@ -3,6 +3,7 @@ import ./make-test-python.nix ({ pkgs, lib, ... }: let port = 1888; tlsPort = 1889; + anonPort = 1890; password = "VERY_secret"; hashedPassword = "$7$101$/WJc4Mp+I+uYE9sR$o7z9rD1EYXHPwEP5GqQj6A7k4W1yVbePlb8TqNcuOLV9WNCiDgwHOB0JHC1WCtdkssqTBduBNUnUGd6kmZvDSw=="; topic = "test/foo"; @@ -63,7 +64,7 @@ in { }; in { server = { pkgs, ... }: { - networking.firewall.allowedTCPPorts = [ port tlsPort ]; + networking.firewall.allowedTCPPorts = [ port tlsPort anonPort ]; services.mosquitto = { enable = true; settings = { @@ -112,6 +113,18 @@ in { use_identity_as_username = true; }; } + { + port = anonPort; + omitPasswordAuth = true; + settings.allow_anonymous = true; + acl = [ "pattern read #" ]; + users = { + anonWriter = { + password = "" + password; + acl = [ "write ${topic}" ]; + }; + }; + } ]; }; }; @@ -136,9 +149,8 @@ in { def publish(args, user, topic="${topic}", port=${toString port}): return "{} {}".format(mosquitto_cmd("pub", user, topic, port), args) - def subscribe(args, user, topic="${topic}", port=${toString port}): - return "{} -C 1 {}".format(mosquitto_cmd("sub", user, topic, port), args) + return "{} -W 5 -C 1 {}".format(mosquitto_cmd("sub", user, topic, port), args) def parallel(*fns): from threading import Thread @@ -150,17 +162,15 @@ in { start_all() server.wait_for_unit("mosquitto.service") - def check_passwords(): + with subtest("check passwords"): client1.succeed(publish("-m test", "password_store")) client1.succeed(publish("-m test", "password_file")) client1.succeed(publish("-m test", "hashed_store")) client1.succeed(publish("-m test", "hashed_file")) - check_passwords() - - def check_acl(): + with subtest("check acl"): client1.succeed(subscribe("", "reader", topic="$SYS/#")) - client1.fail(subscribe("-W 5", "writer", topic="$SYS/#")) + client1.fail(subscribe("", "writer", topic="$SYS/#")) parallel( lambda: client1.succeed(subscribe("-i 3688cdd7-aa07-42a4-be22-cb9352917e40", "reader")), @@ -170,15 +180,13 @@ in { ]) parallel( - lambda: client1.fail(subscribe("-W 5 -i 24ff16a2-ae33-4a51-9098-1b417153c712", "reader")), + lambda: client1.fail(subscribe("-i 24ff16a2-ae33-4a51-9098-1b417153c712", "reader")), lambda: [ server.wait_for_console_text("24ff16a2-ae33-4a51-9098-1b417153c712"), client2.succeed(publish("-m test", "reader")) ]) - check_acl() - - def check_tls(): + with subtest("check tls"): client1.succeed( subscribe( "--cafile ${snakeOil}/ca.crt " @@ -188,6 +196,13 @@ in { port=${toString tlsPort}, user="no_such_user")) - check_tls() + with subtest("check omitPasswordAuth"): + parallel( + lambda: client1.succeed(subscribe("-i fd56032c-d9cb-4813-a3b4-6be0e04c8fc3", + "anonReader", port=${toString anonPort})), + lambda: [ + server.wait_for_console_text("fd56032c-d9cb-4813-a3b4-6be0e04c8fc3"), + client2.succeed(publish("-m test", "anonWriter", port=${toString anonPort})) + ]) ''; }) diff --git a/nixos/tests/mpv.nix b/nixos/tests/mpv.nix index 9e44862cb1b4..a4803f3cb5b5 100644 --- a/nixos/tests/mpv.nix +++ b/nixos/tests/mpv.nix @@ -21,7 +21,7 @@ in }; testScript = '' - machine.execute("set -m; mpv --script-opts=webui-port=${port} --idle=yes &") + machine.execute("set -m; mpv --script-opts=webui-port=${port} --idle=yes >&2 &") machine.wait_for_open_port(${port}) assert "simple-mpv-webui" in machine.succeed("curl -s localhost:${port}") ''; diff --git a/nixos/tests/mumble.nix b/nixos/tests/mumble.nix index 717f3c789288..2b5cc20163bc 100644 --- a/nixos/tests/mumble.nix +++ b/nixos/tests/mumble.nix @@ -38,8 +38,8 @@ in client1.wait_for_x() client2.wait_for_x() - client1.execute("mumble mumble://client1:testpassword\@server/test &") - client2.execute("mumble mumble://client2:testpassword\@server/test &") + client1.execute("mumble mumble://client1:testpassword\@server/test >&2 &") + client2.execute("mumble mumble://client2:testpassword\@server/test >&2 &") # cancel client audio configuration client1.wait_for_window(r"Audio Tuning Wizard") diff --git a/nixos/tests/musescore.nix b/nixos/tests/musescore.nix index 96481a9a8bf4..7fd80d70df12 100644 --- a/nixos/tests/musescore.nix +++ b/nixos/tests/musescore.nix @@ -44,7 +44,7 @@ in ) # Start MuseScore window - machine.execute("DISPLAY=:0.0 mscore &") + machine.execute("DISPLAY=:0.0 mscore >&2 &") # Wait until MuseScore has launched machine.wait_for_window("MuseScore") diff --git a/nixos/tests/nfs/simple.nix b/nixos/tests/nfs/simple.nix index 6a01089c0828..1e319a8eec81 100644 --- a/nixos/tests/nfs/simple.nix +++ b/nixos/tests/nfs/simple.nix @@ -66,7 +66,7 @@ in client2.succeed("time flock -n -s /data/lock true") with subtest("client 2 fails to acquire lock held by client 1"): - client1.succeed("flock -x /data/lock -c 'touch locked; sleep 100000' &") + client1.succeed("flock -x /data/lock -c 'touch locked; sleep 100000' >&2 &") client1.wait_for_file("locked") client2.fail("flock -n -s /data/lock true") diff --git a/nixos/tests/nginx-etag.nix b/nixos/tests/nginx-etag.nix index 63ab2e0c6c27..a7bfc0d26958 100644 --- a/nixos/tests/nginx-etag.nix +++ b/nixos/tests/nginx-etag.nix @@ -76,7 +76,7 @@ import ./make-test-python.nix { server.wait_for_unit("nginx.service") client.wait_for_unit("multi-user.target") - client.execute("test-runner &") + client.execute("test-runner >&2 &") client.wait_for_file("/tmp/passed_stage1") server.succeed( diff --git a/nixos/tests/nixops/default.nix b/nixos/tests/nixops/default.nix index a5c4a82be91d..3fb81906a522 100644 --- a/nixos/tests/nixops/default.nix +++ b/nixos/tests/nixops/default.nix @@ -78,7 +78,7 @@ let # Put newlines on console, to flush the console reader's line buffer # in case nixops' last output did not end in a newline, as is the case # with a status line (if implemented?) - deployer.succeed("while sleep 60s; do echo [60s passed] >/dev/console; done &") + deployer.succeed("while sleep 60s; do echo [60s passed]; done >&2 &") deployer_do("cd ~/unicorn; ssh -oStrictHostKeyChecking=accept-new root@server echo hi") diff --git a/nixos/tests/openarena.nix b/nixos/tests/openarena.nix index 461a35e89fe7..63dc1b9a6857 100644 --- a/nixos/tests/openarena.nix +++ b/nixos/tests/openarena.nix @@ -38,8 +38,8 @@ in { client1.wait_for_x() client2.wait_for_x() - client1.execute("openarena +set r_fullscreen 0 +set name Foo +connect server &") - client2.execute("openarena +set r_fullscreen 0 +set name Bar +connect server &") + client1.execute("openarena +set r_fullscreen 0 +set name Foo +connect server >&2 &") + client2.execute("openarena +set r_fullscreen 0 +set name Bar +connect server >&2 &") server.wait_until_succeeds( "journalctl -u openarena -e | grep -q 'Foo.*entered the game'" diff --git a/nixos/tests/os-prober.nix b/nixos/tests/os-prober.nix index 3cc38ebe3471..a7b955d44721 100644 --- a/nixos/tests/os-prober.nix +++ b/nixos/tests/os-prober.nix @@ -58,9 +58,9 @@ let [ ./hardware-configuration.nix <nixpkgs/nixos/modules/testing/test-instrumentation.nix> ]; - } // (builtins.fromJSON (builtins.readFile ${ + } // pkgs.lib.importJSON ${ pkgs.writeText "simpleConfig.json" (builtins.toJSON simpleConfig) - }))) + }) ''; in { name = "os-prober"; diff --git a/nixos/tests/owncast.nix b/nixos/tests/owncast.nix index e54d2cc5dd48..debb34f5009d 100644 --- a/nixos/tests/owncast.nix +++ b/nixos/tests/owncast.nix @@ -1,21 +1,42 @@ -{ system ? builtins.currentSystem, config ? { } -, pkgs ? import ../.. { inherit system config; } }: - -with import (nixpkgs + "/nixos/lib/testing-python.nix") { inherit system; }; -makeTest { +import ./make-test-python.nix ({ pkgs, ... }: { name = "owncast"; - meta = with pkgs.stdenv.lib.maintainers; { maintainers = [ MayNiklas ]; }; + meta = with pkgs.lib.maintainers; { maintainers = [ MayNiklas ]; }; nodes = { - client = { ... }: { - environment.systemPackages = [ curl ]; - services.owncast = { enable = true; }; + client = { pkgs, ... }: with pkgs.lib; { + networking = { + dhcpcd.enable = false; + interfaces.eth1.ipv6.addresses = mkOverride 0 [ { address = "fd00::2"; prefixLength = 64; } ]; + interfaces.eth1.ipv4.addresses = mkOverride 0 [ { address = "192.168.1.2"; prefixLength = 24; } ]; + }; + }; + server = { pkgs, ... }: with pkgs.lib; { + networking = { + dhcpcd.enable = false; + useNetworkd = true; + useDHCP = false; + interfaces.eth1.ipv6.addresses = mkOverride 0 [ { address = "fd00::1"; prefixLength = 64; } ]; + interfaces.eth1.ipv4.addresses = mkOverride 0 [ { address = "192.168.1.1"; prefixLength = 24; } ]; + + firewall.allowedTCPPorts = [ 8080 ]; + }; + + services.owncast = { + enable = true; + listen = "0.0.0.0"; + }; }; }; testScript = '' start_all() - client.wait_for_unit("owncast.service") - client.succeed("curl localhost:8080/api/status") + + client.wait_for_unit("network-online.target") + server.wait_for_unit("network-online.target") + server.wait_for_unit("owncast.service") + server.wait_until_succeeds("ss -ntl | grep -q 8080") + + client.succeed("curl http://192.168.1.1:8080/api/status") + client.succeed("curl http://[fd00::1]:8080/api/status") ''; -} +}) diff --git a/nixos/tests/pantheon.nix b/nixos/tests/pantheon.nix index 20aee2eb7a4c..aebf6b534476 100644 --- a/nixos/tests/pantheon.nix +++ b/nixos/tests/pantheon.nix @@ -51,7 +51,7 @@ import ./make-test-python.nix ({ pkgs, lib, ...} : machine.wait_for_window("plank") with subtest("Open elementary terminal"): - machine.execute("su - ${user.name} -c 'DISPLAY=:0 io.elementary.terminal &'") + machine.execute("su - ${user.name} -c 'DISPLAY=:0 io.elementary.terminal >&2 &'") machine.wait_for_window("io.elementary.terminal") machine.sleep(20) machine.screenshot("screen") diff --git a/nixos/tests/plasma5.nix b/nixos/tests/plasma5.nix index 7a5b7db94629..281c9843e901 100644 --- a/nixos/tests/plasma5.nix +++ b/nixos/tests/plasma5.nix @@ -42,15 +42,15 @@ import ./make-test-python.nix ({ pkgs, ...} : machine.succeed("getfacl -p /dev/snd/timer | grep -q ${user.name}") with subtest("Run Dolphin"): - machine.execute("su - ${user.name} -c 'DISPLAY=:0.0 dolphin &'") + machine.execute("su - ${user.name} -c 'DISPLAY=:0.0 dolphin >&2 &'") machine.wait_for_window(" Dolphin") with subtest("Run Konsole"): - machine.execute("su - ${user.name} -c 'DISPLAY=:0.0 konsole &'") + machine.execute("su - ${user.name} -c 'DISPLAY=:0.0 konsole >&2 &'") machine.wait_for_window("Konsole") with subtest("Run systemsettings"): - machine.execute("su - ${user.name} -c 'DISPLAY=:0.0 systemsettings5 &'") + machine.execute("su - ${user.name} -c 'DISPLAY=:0.0 systemsettings5 >&2 &'") machine.wait_for_window("Settings") with subtest("Wait to get a screenshot"): diff --git a/nixos/tests/plotinus.nix b/nixos/tests/plotinus.nix index ddd6a4c11946..af38b41813b7 100644 --- a/nixos/tests/plotinus.nix +++ b/nixos/tests/plotinus.nix @@ -14,7 +14,7 @@ import ./make-test-python.nix ({ pkgs, ... }: { testScript = '' machine.wait_for_x() - machine.succeed("gnome-calculator &") + machine.succeed("gnome-calculator >&2 &") machine.wait_for_window("gnome-calculator") machine.succeed( "xdotool search --sync --onlyvisible --class gnome-calculator " diff --git a/nixos/tests/prometheus.nix b/nixos/tests/prometheus.nix index 70ac78a4a468..20f8c4459e10 100644 --- a/nixos/tests/prometheus.nix +++ b/nixos/tests/prometheus.nix @@ -41,6 +41,7 @@ in import ./make-test-python.nix { networking.firewall.allowedTCPPorts = [ grpcPort ]; services.prometheus = { enable = true; + enableReload = true; scrapeConfigs = [ { job_name = "prometheus"; @@ -118,6 +119,32 @@ in import ./make-test-python.nix { # }; #}; }; + # Adds a "specialisation" of the above config which allows us to + # "switch" to it and see if the services.prometheus.enableReload + # functionality actually reloads the prometheus service instead of + # restarting it. + specialisation = { + "prometheus-config-change" = { + configuration = { + environment.systemPackages = [ pkgs.yq ]; + + # This configuration just adds a new prometheus job + # to scrape the node_exporter metrics of the s3 machine. + services.prometheus = { + scrapeConfigs = [ + { + job_name = "s3-node_exporter"; + static_configs = [ + { + targets = [ "s3:9100" ]; + } + ]; + } + ]; + }; + }; + }; + }; }; query = { pkgs, ... }: { @@ -171,10 +198,17 @@ in import ./make-test-python.nix { }; environment.systemPackages = [ pkgs.minio-client ]; + + services.prometheus.exporters.node = { + enable = true; + openFirewall = true; + }; }; }; testScript = { nodes, ... } : '' + import json + # Before starting the other machines we first make sure that our S3 service is online # and has a bucket added for thanos: s3.start() @@ -193,6 +227,7 @@ in import ./make-test-python.nix { # Check if prometheus responds to requests: prometheus.wait_for_unit("prometheus.service") + prometheus.wait_for_open_port(${toString queryPort}) prometheus.succeed("curl -sf http://127.0.0.1:${toString queryPort}/metrics") @@ -245,5 +280,61 @@ in import ./make-test-python.nix { + "jq .thanos.labels.some_label | " + "grep 'required by thanos'" ) + + # Check if switching to a NixOS configuration that changes the prometheus + # configuration reloads (instead of restarts) prometheus before the switch + # finishes successfully: + with subtest("config change reloads prometheus"): + # We check if prometheus has finished reloading by looking for the message + # "Completed loading of configuration file" in the journal between the start + # and finish of switching to the new NixOS configuration. + # + # To mark the start we record the journal cursor before starting the switch: + cursor_before_switching = json.loads( + prometheus.succeed("journalctl -n1 -o json --output-fields=__CURSOR") + )["__CURSOR"] + + # Now we switch: + prometheus_config_change = prometheus.succeed( + "readlink /run/current-system/specialisation/prometheus-config-change" + ).strip() + prometheus.succeed(prometheus_config_change + "/bin/switch-to-configuration test") + + # Next we retrieve all logs since the start of switching: + logs_after_starting_switching = prometheus.succeed( + """ + journalctl --after-cursor='{cursor_before_switching}' -o json --output-fields=MESSAGE + """.format( + cursor_before_switching=cursor_before_switching + ) + ) + + # Finally we check if the message "Completed loading of configuration file" + # occurs before the "finished switching to system configuration" message: + finished_switching_msg = ( + "finished switching to system configuration " + prometheus_config_change + ) + reloaded_before_switching_finished = False + finished_switching = False + for log_line in logs_after_starting_switching.split("\n"): + msg = json.loads(log_line)["MESSAGE"] + if "Completed loading of configuration file" in msg: + reloaded_before_switching_finished = True + if msg == finished_switching_msg: + finished_switching = True + break + + assert reloaded_before_switching_finished + assert finished_switching + + # Check if the reloaded config includes the new s3-node_exporter job: + prometheus.succeed( + """ + curl -sf http://127.0.0.1:${toString queryPort}/api/v1/status/config \ + | jq -r .data.yaml \ + | yq '.scrape_configs | any(.job_name == "s3-node_exporter")' \ + | grep true + """ + ) ''; } diff --git a/nixos/tests/pt2-clone.nix b/nixos/tests/pt2-clone.nix index 3c090b7de428..364920c39871 100644 --- a/nixos/tests/pt2-clone.nix +++ b/nixos/tests/pt2-clone.nix @@ -22,7 +22,7 @@ import ./make-test-python.nix ({ pkgs, ... }: { # Add a dummy sound card, or the program won't start machine.execute("modprobe snd-dummy") - machine.execute("pt2-clone &") + machine.execute("pt2-clone >&2 &") machine.wait_for_window(r"ProTracker") machine.sleep(5) diff --git a/nixos/tests/seafile.nix b/nixos/tests/seafile.nix index 17862cff189e..70b9ba55457e 100644 --- a/nixos/tests/seafile.nix +++ b/nixos/tests/seafile.nix @@ -6,7 +6,7 @@ import ./make-test-python.nix ({ pkgs, ... }: }; in { name = "seafile"; - meta = with pkgs.stdenv.lib.maintainers; { + meta = with pkgs.lib.maintainers; { maintainers = [ kampfschlaefer schmittlauch ]; }; diff --git a/nixos/tests/service-runner.nix b/nixos/tests/service-runner.nix index 58f46735f56d..79d96f739a6c 100644 --- a/nixos/tests/service-runner.nix +++ b/nixos/tests/service-runner.nix @@ -24,7 +24,7 @@ import ./make-test-python.nix ({ pkgs, ... }: { machine.succeed( """ mkdir -p /run/nginx /var/log/nginx /var/cache/nginx - ${nodes.machine.config.systemd.services.nginx.runner} & + ${nodes.machine.config.systemd.services.nginx.runner} >&2 & echo $!>my-nginx.pid """ ) diff --git a/nixos/tests/shattered-pixel-dungeon.nix b/nixos/tests/shattered-pixel-dungeon.nix index d8c4b44819e4..d4e5de22ab9d 100644 --- a/nixos/tests/shattered-pixel-dungeon.nix +++ b/nixos/tests/shattered-pixel-dungeon.nix @@ -19,7 +19,7 @@ import ./make-test-python.nix ({ pkgs, ... }: { testScript = '' machine.wait_for_x() - machine.execute("shattered-pixel-dungeon &") + machine.execute("shattered-pixel-dungeon >&2 &") machine.wait_for_window(r"Shattered Pixel Dungeon") machine.sleep(5) if "Enter" not in machine.get_screen_text(): diff --git a/nixos/tests/signal-desktop.nix b/nixos/tests/signal-desktop.nix index 379af4d3912b..7bc7cfe18cf8 100644 --- a/nixos/tests/signal-desktop.nix +++ b/nixos/tests/signal-desktop.nix @@ -41,7 +41,7 @@ in { machine.wait_for_x() # start signal desktop - machine.execute("su - alice -c signal-desktop &") + machine.execute("su - alice -c signal-desktop >&2 &") # Wait for the Signal window to appear. Since usually the tests # are run sandboxed and therfore with no internet, we can not wait diff --git a/nixos/tests/soapui.nix b/nixos/tests/soapui.nix index 205128df91f4..76a87ed5efa1 100644 --- a/nixos/tests/soapui.nix +++ b/nixos/tests/soapui.nix @@ -16,7 +16,7 @@ import ./make-test-python.nix ({ pkgs, ... }: { testScript = '' machine.wait_for_x() - machine.succeed("soapui &") + machine.succeed("soapui >&2 &") machine.wait_for_window(r"SoapUI \d+\.\d+\.\d+") machine.sleep(1) machine.screenshot("soapui") diff --git a/nixos/tests/systemd-boot.nix b/nixos/tests/systemd-boot.nix index ae3727afaf69..a6742606dbef 100644 --- a/nixos/tests/systemd-boot.nix +++ b/nixos/tests/systemd-boot.nix @@ -42,7 +42,7 @@ in # Check that specialisations create corresponding boot entries. specialisation = makeTest { name = "systemd-boot-specialisation"; - meta.maintainers = with pkgs.stdenv.lib.maintainers; [ lukegb ]; + meta.maintainers = with pkgs.lib.maintainers; [ lukegb ]; machine = { pkgs, lib, ... }: { imports = [ common ]; diff --git a/nixos/tests/tigervnc.nix b/nixos/tests/tigervnc.nix index 092eaf238d80..ed575682d933 100644 --- a/nixos/tests/tigervnc.nix +++ b/nixos/tests/tigervnc.nix @@ -35,13 +35,13 @@ makeTest { for host in [server, client]: host.succeed("echo foobar | vncpasswd -f > vncpasswd") - server.succeed("Xvnc -geometry 720x576 :1 -PasswordFile vncpasswd &") + server.succeed("Xvnc -geometry 720x576 :1 -PasswordFile vncpasswd >&2 &") server.wait_until_succeeds("nc -z localhost 5901", timeout=10) server.succeed("DISPLAY=:1 xwininfo -root | grep 720x576") - server.execute("DISPLAY=:1 display -size 360x200 -font sans -gravity south label:'HELLO VNC WORLD' &") + server.execute("DISPLAY=:1 display -size 360x200 -font sans -gravity south label:'HELLO VNC WORLD' >&2 &") client.wait_for_x() - client.execute("vncviewer server:1 -PasswordFile vncpasswd &") + client.execute("vncviewer server:1 -PasswordFile vncpasswd >&2 &") client.wait_for_window(r"VNC") client.screenshot("screenshot") text = client.get_screen_text() diff --git a/nixos/tests/tinydns.nix b/nixos/tests/tinydns.nix index b80e3451700a..124508bc004b 100644 --- a/nixos/tests/tinydns.nix +++ b/nixos/tests/tinydns.nix @@ -21,6 +21,20 @@ import ./make-test-python.nix ({ lib, ...} : { testScript = '' nameserver.start() nameserver.wait_for_unit("tinydns.service") - nameserver.succeed("host bla.foo.bar 192.168.1.1 | grep '1\.2\.3\.4'") + + # We query tinydns a few times to trigger the bug: + # + # nameserver # [ 6.105872] mmap: tinydns (842): VmData 331776 exceed data ulimit 300000. Update limits or use boot option ignore_rlimit_data. + # + # which was reported in https://github.com/NixOS/nixpkgs/issues/119066. + # Without the patch <nixpkgs/pkgs/tools/networking/djbdns/softlimit.patch> + # it fails on the 10th iteration. + nameserver.succeed( + """ + for i in {1..100}; do + host bla.foo.bar 192.168.1.1 | grep '1\.2\.3\.4' + done + """ + ) ''; }) diff --git a/nixos/tests/turbovnc-headless-server.nix b/nixos/tests/turbovnc-headless-server.nix index dfa17d65f85e..7d705c56ecf3 100644 --- a/nixos/tests/turbovnc-headless-server.nix +++ b/nixos/tests/turbovnc-headless-server.nix @@ -97,7 +97,7 @@ import ./make-test-python.nix ({ pkgs, lib, ... }: { ) machine.execute( # Note trailing & for backgrounding. - f"({xvnc_command} | tee /tmp/Xvnc.stdout) 3>&1 1>&2 2>&3 | tee /tmp/Xvnc.stderr &", + f"({xvnc_command} | tee /tmp/Xvnc.stdout) 3>&1 1>&2 2>&3 | tee /tmp/Xvnc.stderr >&2 &", ) @@ -119,7 +119,7 @@ import ./make-test-python.nix ({ pkgs, lib, ... }: { def test_glxgears_failing_with_bad_driver_path(): machine.execute( # Note trailing & for backgrounding. - "(env DISPLAY=:0 LIBGL_DRIVERS_PATH=/nonexistent glxgears -info | tee /tmp/glxgears-should-fail.stdout) 3>&1 1>&2 2>&3 | tee /tmp/glxgears-should-fail.stderr &" + "(env DISPLAY=:0 LIBGL_DRIVERS_PATH=/nonexistent glxgears -info | tee /tmp/glxgears-should-fail.stdout) 3>&1 1>&2 2>&3 | tee /tmp/glxgears-should-fail.stderr >&2 &" ) machine.wait_until_succeeds("test -f /tmp/glxgears-should-fail.stderr") wait_until_terminated_or_succeeds( @@ -136,7 +136,7 @@ import ./make-test-python.nix ({ pkgs, lib, ... }: { def test_glxgears_prints_renderer(): machine.execute( # Note trailing & for backgrounding. - "(env DISPLAY=:0 glxgears -info | tee /tmp/glxgears.stdout) 3>&1 1>&2 2>&3 | tee /tmp/glxgears.stderr &" + "(env DISPLAY=:0 glxgears -info | tee /tmp/glxgears.stdout) 3>&1 1>&2 2>&3 | tee /tmp/glxgears.stderr >&2 &" ) machine.wait_until_succeeds("test -f /tmp/glxgears.stderr") wait_until_terminated_or_succeeds( diff --git a/nixos/tests/tuxguitar.nix b/nixos/tests/tuxguitar.nix index 6586132d3cd4..63a7b6c7dec9 100644 --- a/nixos/tests/tuxguitar.nix +++ b/nixos/tests/tuxguitar.nix @@ -16,7 +16,7 @@ import ./make-test-python.nix ({ pkgs, ... }: { testScript = '' machine.wait_for_x() - machine.succeed("tuxguitar &") + machine.succeed("tuxguitar >&2 &") machine.wait_for_window("TuxGuitar - Untitled.tg") machine.sleep(1) machine.screenshot("tuxguitar") diff --git a/nixos/tests/virtualbox.nix b/nixos/tests/virtualbox.nix index 09314d93b7d0..f15412d365fa 100644 --- a/nixos/tests/virtualbox.nix +++ b/nixos/tests/virtualbox.nix @@ -430,7 +430,7 @@ in mapAttrs (mkVBoxTest false vboxVMs) { create_vm_simple() - machine.succeed(ru("VirtualBox &")) + machine.succeed(ru("VirtualBox >&2 &")) machine.wait_until_succeeds(ru("xprop -name 'Oracle VM VirtualBox Manager'")) machine.sleep(5) machine.screenshot("gui_manager_started") diff --git a/nixos/tests/vscodium.nix b/nixos/tests/vscodium.nix index ca75da35b1e1..033090aa0e3d 100644 --- a/nixos/tests/vscodium.nix +++ b/nixos/tests/vscodium.nix @@ -31,7 +31,7 @@ import ./make-test-python.nix ({ pkgs, ...} : # Start VSCodium with a file that doesn't exist yet machine.fail("ls /home/alice/foo.txt") - machine.succeed("su - alice -c 'codium foo.txt' &") + machine.succeed("su - alice -c 'codium foo.txt' >&2 &") # Wait for the window to appear machine.wait_for_text("VSCodium") diff --git a/nixos/tests/wine.nix b/nixos/tests/wine.nix new file mode 100644 index 000000000000..c46c7d338b2e --- /dev/null +++ b/nixos/tests/wine.nix @@ -0,0 +1,41 @@ +{ system ? builtins.currentSystem +, pkgs ? import ../.. { inherit system; config = { }; } +}: + +let + inherit (pkgs.lib) concatMapStrings listToAttrs; + inherit (import ../lib/testing-python.nix { inherit system pkgs; }) makeTest; + + hello32 = "${pkgs.pkgsCross.mingw32.hello}/bin/hello.exe"; + hello64 = "${pkgs.pkgsCross.mingwW64.hello}/bin/hello.exe"; + + makeWineTest = packageSet: exes: variant: rec { + name = "${packageSet}-${variant}"; + value = makeTest { + inherit name; + meta = with pkgs.lib.maintainers; { maintainers = [ chkno ]; }; + + machine = { pkgs, ... }: { + environment.systemPackages = [ pkgs."${packageSet}"."${variant}" ]; + virtualisation.diskSize = "800"; + }; + + testScript = '' + machine.wait_for_unit("multi-user.target") + ${concatMapStrings (exe: '' + greeting = machine.succeed( + "bash -c 'wine ${exe} 2> >(tee wine-stderr >&2)'" + ) + assert 'Hello, world!' in greeting + machine.fail( + "fgrep 'Could not find Wine Gecko. HTML rendering will be disabled.' wine-stderr" + ) + '') exes} + ''; + }; + }; + + variants = [ "base" "full" "minimal" "staging" "unstable" ]; + +in listToAttrs (map (makeWineTest "winePackages" [ hello32 ]) variants + ++ map (makeWineTest "wineWowPackages" [ hello32 hello64 ]) variants) diff --git a/nixos/tests/xfce.nix b/nixos/tests/xfce.nix index 99e30342e593..148eccdbe308 100644 --- a/nixos/tests/xfce.nix +++ b/nixos/tests/xfce.nix @@ -38,7 +38,7 @@ import ./make-test-python.nix ({ pkgs, ...} : { # Check that logging in has given the user ownership of devices. machine.succeed("getfacl -p /dev/snd/timer | grep -q ${user.name}") - machine.succeed("su - ${user.name} -c 'DISPLAY=:0.0 xfce4-terminal &'") + machine.succeed("su - ${user.name} -c 'DISPLAY=:0.0 xfce4-terminal >&2 &'") machine.wait_for_window("Terminal") machine.sleep(10) machine.screenshot("screen") diff --git a/nixos/tests/xrdp.nix b/nixos/tests/xrdp.nix index 92eb7d4772ef..0e1d521c5ace 100644 --- a/nixos/tests/xrdp.nix +++ b/nixos/tests/xrdp.nix @@ -32,13 +32,13 @@ import ./make-test-python.nix ({ pkgs, ...} : { client.sleep(5) - client.execute("xterm &") + client.execute("xterm >&2 &") client.sleep(1) client.send_chars("xfreerdp /cert-tofu /w:640 /h:480 /v:127.0.0.1 /u:${user.name} /p:${user.password}\n") client.sleep(5) client.screenshot("localrdp") - client.execute("xterm &") + client.execute("xterm >&2 &") client.sleep(1) client.send_chars("xfreerdp /cert-tofu /w:640 /h:480 /v:server /u:${user.name} /p:${user.password}\n") client.sleep(5) diff --git a/nixos/tests/xterm.nix b/nixos/tests/xterm.nix index 078d1dca9642..4ee31139ab52 100644 --- a/nixos/tests/xterm.nix +++ b/nixos/tests/xterm.nix @@ -13,7 +13,7 @@ import ./make-test-python.nix ({ pkgs, ...} : { testScript = '' machine.wait_for_x() - machine.succeed("DISPLAY=:0 xterm -title testterm -class testterm -fullscreen &") + machine.succeed("DISPLAY=:0 xterm -title testterm -class testterm -fullscreen >&2 &") machine.sleep(2) machine.send_chars("echo $XTERM_VERSION >> /tmp/xterm_version\n") machine.wait_for_file("/tmp/xterm_version") diff --git a/pkgs/applications/audio/ChowKick/default.nix b/pkgs/applications/audio/ChowKick/default.nix new file mode 100644 index 000000000000..135ed3a11a1c --- /dev/null +++ b/pkgs/applications/audio/ChowKick/default.nix @@ -0,0 +1,106 @@ +{ alsa-lib +, at-spi2-core +, brotli +, cmake +, curl +, dbus +, epoxy +, fetchFromGitHub +, freeglut +, freetype +, gtk2-x11 +, lib +, libGL +, libXcursor +, libXdmcp +, libXext +, libXinerama +, libXrandr +, libXtst +, libdatrie +, libjack2 +, libpsl +, libselinux +, libsepol +, libsysprof-capture +, libthai +, libxkbcommon +, lv2 +, pcre +, pkg-config +, python3 +, sqlite +, stdenv +, util-linuxMinimal +, webkitgtk +}: + +stdenv.mkDerivation rec { + pname = "ChowKick"; + version = "1.1.1"; + + src = fetchFromGitHub { + owner = "Chowdhury-DSP"; + repo = pname; + rev = "v${version}"; + sha256 = "0amnp0p7ckbbr9dcbdnld1ryv46kvza2dj8m6hzmi7c1s4df8x5q"; + fetchSubmodules = true; + }; + + nativeBuildInputs = [ + pkg-config + cmake + ]; + buildInputs = [ + alsa-lib + at-spi2-core + brotli + curl + dbus + epoxy + freeglut + freetype + gtk2-x11 + libGL + libXcursor + libXdmcp + libXext + libXinerama + libXrandr + libXtst + libdatrie + libjack2 + libpsl + libselinux + libsepol + libsysprof-capture + libthai + libxkbcommon + lv2 + pcre + python3 + sqlite + util-linuxMinimal + webkitgtk + ]; + + cmakeFlags = [ + "-DCMAKE_AR=${stdenv.cc.cc}/bin/gcc-ar" + "-DCMAKE_RANLIB=${stdenv.cc.cc}/bin/gcc-ranlib" + ]; + + installPhase = '' + mkdir -p $out/lib/lv2 $out/lib/vst3 $out/bin + cp -r ChowKick_artefacts/Release/LV2//${pname}.lv2 $out/lib/lv2 + cp -r ChowKick_artefacts/Release/VST3/${pname}.vst3 $out/lib/vst3 + cp ChowKick_artefacts/Release/Standalone/${pname} $out/bin + ''; + + meta = with lib; { + homepage = "https://github.com/Chowdhury-DSP/ChowKick"; + description = "Kick synthesizer based on old-school drum machine circuits"; + license = with licenses; [ bsd3 ]; + maintainers = with maintainers; [ magnetophon ]; + platforms = platforms.linux; + }; +} diff --git a/pkgs/applications/audio/aether-lv2/default.nix b/pkgs/applications/audio/aether-lv2/default.nix new file mode 100644 index 000000000000..e912c7fa49a4 --- /dev/null +++ b/pkgs/applications/audio/aether-lv2/default.nix @@ -0,0 +1,33 @@ +{ lib, stdenv, fetchFromGitHub, lv2, libX11, libGL, libGLU, mesa, cmake }: + +stdenv.mkDerivation rec { + pname = "aether-lv2"; + version = "1.2.1"; + + src = fetchFromGitHub { + owner = "Dougal-s"; + repo = "aether"; + rev = "v${version}"; + sha256 = "0xhih4smjxn87s0f4gaab51d8594qlp0lyypzxl5lm37j1i9zigs"; + fetchSubmodules = true; + }; + + nativeBuildInputs = [ cmake ]; + + buildInputs = [ + lv2 libX11 libGL libGLU mesa + ]; + + installPhase = '' + mkdir -p $out/lib/lv2 + cp -r aether.lv2 $out/lib/lv2 + ''; + + meta = with lib; { + homepage = "https://dougal-s.github.io/Aether/"; + description = "An algorithmic reverb LV2 based on Cloudseed"; + maintainers = [ maintainers.magnetophon ]; + platforms = platforms.linux; + license = licenses.mit; + }; +} diff --git a/pkgs/applications/audio/ashuffle/default.nix b/pkgs/applications/audio/ashuffle/default.nix index e445132ee3c0..5a1be2eaf0c3 100644 --- a/pkgs/applications/audio/ashuffle/default.nix +++ b/pkgs/applications/audio/ashuffle/default.nix @@ -10,13 +10,13 @@ stdenv.mkDerivation rec { pname = "ashuffle"; - version = "3.10.1"; + version = "3.12.3"; src = fetchFromGitHub { owner = "joshkunz"; repo = "ashuffle"; rev = "v${version}"; - sha256 = "103jhajqwryiaf52qqgshajcnsxsz4l8gn3sz6bxs7k0yq5x1knr"; + sha256 = "sha256-y2DH8SjSZ8hV6DAC4uDw5Wn7O0oj/WIhIr4BE/+jUxM="; fetchSubmodules = true; }; diff --git a/pkgs/applications/audio/aumix/default.nix b/pkgs/applications/audio/aumix/default.nix index b1808ed90f11..51dda20cc3a1 100644 --- a/pkgs/applications/audio/aumix/default.nix +++ b/pkgs/applications/audio/aumix/default.nix @@ -1,30 +1,34 @@ -{lib, stdenv, fetchurl, gettext, ncurses +{ lib +, stdenv +, fetchurl +, gettext +, ncurses , gtkGUI ? false -, pkg-config ? null -, gtk2 ? null}: - -assert gtkGUI -> pkg-config != null && gtk2 != null; +, pkg-config +, gtk2 +}: stdenv.mkDerivation rec { - name = "aumix-2.9.1"; + pname = "aumix"; + version = "2.9.1"; + src = fetchurl { - url = "http://www.jpj.net/~trevor/aumix/releases/${name}.tar.bz2"; + url = "http://www.jpj.net/~trevor/aumix/releases/aumix-${version}.tar.bz2"; sha256 = "0a8fwyxnc5qdxff8sl2sfsbnvgh6pkij4yafiln0fxgg6bal7knj"; }; buildInputs = [ gettext ncurses ] - ++ (if gtkGUI then [pkg-config gtk2] else []); + ++ lib.optionals gtkGUI [ pkg-config gtk2 ]; - meta = { + meta = with lib; { description = "Audio mixer for X and the console"; longDescription = '' Aumix adjusts an audio mixer from X, the console, a terminal, the command line or a script. ''; homepage = "http://www.jpj.net/~trevor/aumix.html"; - license = lib.licenses.gpl2Plus; - - maintainers = [ ]; - platforms = lib.platforms.linux; + license = licenses.gpl2Plus; + maintainers = with maintainers; [ ]; + platforms = platforms.linux; }; } diff --git a/pkgs/applications/audio/bespokesynth/default.nix b/pkgs/applications/audio/bespokesynth/default.nix index c3c33267f65d..e8d2ada38783 100644 --- a/pkgs/applications/audio/bespokesynth/default.nix +++ b/pkgs/applications/audio/bespokesynth/default.nix @@ -106,7 +106,13 @@ stdenv.mkDerivation rec { meta = with lib; { description = "Software modular synth with controllers support, scripting and VST"; homepage = "https://github.com/awwbees/BespokeSynth"; - license = licenses.gpl3Plus; + license = with licenses; [ + gpl3Plus + + # This package is unfree and not distributable due to the license of VST2. + # see #145607 + unfree + ]; maintainers = with maintainers; [ astro ]; platforms = platforms.all; }; diff --git a/pkgs/applications/audio/bitwig-studio/bitwig-studio4.nix b/pkgs/applications/audio/bitwig-studio/bitwig-studio4.nix index 447bc7d6635d..aa9290d9477f 100644 --- a/pkgs/applications/audio/bitwig-studio/bitwig-studio4.nix +++ b/pkgs/applications/audio/bitwig-studio/bitwig-studio4.nix @@ -6,11 +6,11 @@ stdenv.mkDerivation rec { pname = "bitwig-studio"; - version = "4.0.1"; + version = "4.0.7"; src = fetchurl { url = "https://downloads.bitwig.com/stable/${version}/${pname}-${version}.deb"; - sha256 = "sha256-yhCAKlbLjyBywkSYY1aqbUGFlAHBLR8g8xPDIqoUIZk="; + sha256 = "sha256-NAiwHLYhTAQH6xZw5u8bM7MOILcMclQMKtJc7MGJb+Q="; }; nativeBuildInputs = [ dpkg makeWrapper wrapGAppsHook ]; diff --git a/pkgs/applications/audio/clerk/default.nix b/pkgs/applications/audio/clerk/default.nix index ebcd09ca6adf..ff9dca961aea 100644 --- a/pkgs/applications/audio/clerk/default.nix +++ b/pkgs/applications/audio/clerk/default.nix @@ -1,8 +1,18 @@ -{ lib, stdenv, fetchFromGitHub, makeWrapper, rofi, mpc_cli, perl, -util-linux, python3Packages, libnotify }: +{ lib +, stdenv +, fetchFromGitHub +, makeWrapper +, rofi +, mpc_cli +, perl +, util-linux +, python3Packages +, libnotify +}: stdenv.mkDerivation { - name = "clerk-2016-10-14"; + pname = "clerk"; + version = "unstable-2016-10-14"; src = fetchFromGitHub { owner = "carnager"; @@ -26,8 +36,8 @@ stdenv.mkDerivation { meta = with lib; { description = "An MPD client built on top of rofi"; - homepage = "https://github.com/carnager/clerk"; - license = licenses.mit; + homepage = "https://github.com/carnager/clerk"; + license = licenses.mit; maintainers = with maintainers; [ anderspapitto ]; }; } diff --git a/pkgs/applications/audio/ecasound/default.nix b/pkgs/applications/audio/ecasound/default.nix index 47db22016485..108be8726c50 100644 --- a/pkgs/applications/audio/ecasound/default.nix +++ b/pkgs/applications/audio/ecasound/default.nix @@ -1,5 +1,6 @@ { lib, stdenv , fetchurl +, fetchpatch , pkg-config , alsa-lib , audiofile @@ -28,6 +29,16 @@ stdenv.mkDerivation rec { sha256 = "1m7njfjdb7sqf0lhgc4swihgdr4snkg8v02wcly08wb5ar2fr2s6"; }; + patches = [ + # Pull patch pending upstream inclusion for ncurses-6.3: + # https://sourceforge.net/p/ecasound/bugs/54/ + (fetchpatch { + name = "ncursdes-6.3.patch"; + url = "https://sourceforge.net/p/ecasound/bugs/54/attachment/0001-ecasignalview.cpp-always-use-s-style-format-for-prin.patch"; + sha256 = "1x1gsjzd43lh19mhpmwrbq269h56s8bxgyv0yfi5yf0sqjf9vaq0"; + }) + ]; + nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/applications/audio/espeak/default.nix b/pkgs/applications/audio/espeak/default.nix index 675f31b478ce..e5579175bbb7 100644 --- a/pkgs/applications/audio/espeak/default.nix +++ b/pkgs/applications/audio/espeak/default.nix @@ -1,10 +1,11 @@ { lib, stdenv, fetchurl, unzip, portaudio }: stdenv.mkDerivation rec { - name = "espeak-1.48.04"; + pname = "espeak"; + version = "1.48.04"; src = fetchurl { - url = "mirror://sourceforge/espeak/${name}-source.zip"; + url = "mirror://sourceforge/espeak/espeak-${version}-source.zip"; sha256 = "0n86gwh9pw0jqqpdz7mxggllfr8k0r7pc67ayy7w5z6z79kig6mz"; }; diff --git a/pkgs/applications/audio/espeak/edit.nix b/pkgs/applications/audio/espeak/edit.nix index 0b9fa3dfbe54..2240a8561164 100644 --- a/pkgs/applications/audio/espeak/edit.nix +++ b/pkgs/applications/audio/espeak/edit.nix @@ -1,10 +1,11 @@ { lib, stdenv, fetchurl, pkg-config, unzip, portaudio, wxGTK, sox }: stdenv.mkDerivation rec { - name = "espeakedit-1.48.03"; + pname = "espeakedit"; + version = "1.48.03"; src = fetchurl { - url = "mirror://sourceforge/espeak/${name}.zip"; + url = "mirror://sourceforge/espeak/espeakedit-${version}.zip"; sha256 = "0x8s7vpb7rw5x37yjzy1f98m4f2csdg89libb74fm36gn8ly0hli"; }; diff --git a/pkgs/applications/audio/faust/faust2.nix b/pkgs/applications/audio/faust/faust2.nix index c1d351fa53e1..0309031cf785 100644 --- a/pkgs/applications/audio/faust/faust2.nix +++ b/pkgs/applications/audio/faust/faust2.nix @@ -20,13 +20,13 @@ with lib.strings; let - version = "2.30.5"; + version = "2.37.3"; src = fetchFromGitHub { owner = "grame-cncm"; repo = "faust"; rev = version; - sha256 = "0cs52w4rwaj5d8pjak4cxsg02sxvx4y07592nc3ck81clqjmszmm"; + sha256 = "sha256-Jzauw8+vBjtbK73Bh4huhX1ql1cWmh80EzEET3x03rc="; fetchSubmodules = true; }; diff --git a/pkgs/applications/audio/faustPhysicalModeling/default.nix b/pkgs/applications/audio/faustPhysicalModeling/default.nix index 8dd43ead5914..f9dbd3f80f0c 100644 --- a/pkgs/applications/audio/faustPhysicalModeling/default.nix +++ b/pkgs/applications/audio/faustPhysicalModeling/default.nix @@ -1,13 +1,13 @@ { stdenv, lib, fetchFromGitHub, faust2jaqt, faust2lv2 }: stdenv.mkDerivation rec { pname = "faustPhysicalModeling"; - version = "2.33.1"; + version = "2.37.3"; src = fetchFromGitHub { owner = "grame-cncm"; repo = "faust"; rev = version; - sha256 = "sha256-gzkfLfNhJHg/jEhf/RQDhHnXxn3UI15eDZfutKt3yGk="; + sha256 = "sha256-h6L+qRkN2chnI4821WrjD3uRFw3J0sUYVLL8w57vR1U="; }; buildInputs = [ faust2jaqt faust2lv2 ]; diff --git a/pkgs/applications/audio/foo-yc20/default.nix b/pkgs/applications/audio/foo-yc20/default.nix index f7abeb2a91e8..abb13b021c04 100644 --- a/pkgs/applications/audio/foo-yc20/default.nix +++ b/pkgs/applications/audio/foo-yc20/default.nix @@ -1,7 +1,7 @@ -{ lib, stdenv, fetchFromGitHub, libjack2, gtk2, lv2, faust, pkg-config }: +{ lib, stdenv, fetchFromGitHub, libjack2, gtk2, lv2, faust, pkg-config }: stdenv.mkDerivation { - version = "git-2015-05-21"; + version = "unstable-2015-05-21"; pname = "foo-yc20"; src = fetchFromGitHub { owner = "sampov2"; @@ -22,7 +22,7 @@ stdenv.mkDerivation { broken = true; # see: https://github.com/sampov2/foo-yc20/issues/7 description = "A Faust implementation of a 1969 designed Yamaha combo organ, the YC-20"; homepage = "https://github.com/sampov2/foo-yc20"; - license = with licenses; [ bsd3 lgpl21 mpl11 ] ; + license = with licenses; [ bsd3 lgpl21 mpl11 ]; maintainers = [ maintainers.magnetophon ]; platforms = platforms.linux; }; diff --git a/pkgs/applications/audio/freqtweak/default.nix b/pkgs/applications/audio/freqtweak/default.nix index 113894a9357d..71bb0f6f05c8 100644 --- a/pkgs/applications/audio/freqtweak/default.nix +++ b/pkgs/applications/audio/freqtweak/default.nix @@ -21,7 +21,7 @@ stdenv.mkDerivation rec { enableParallelBuilding = true; meta = with lib; { - homepage = http://essej.net/freqtweak/; + homepage = "http://essej.net/freqtweak/"; description = "Realtime audio frequency spectral manipulation"; maintainers = [ maintainers.magnetophon ]; platforms = platforms.linux; diff --git a/pkgs/applications/audio/jconvolver/default.nix b/pkgs/applications/audio/jconvolver/default.nix new file mode 100644 index 000000000000..5294ae5f13a1 --- /dev/null +++ b/pkgs/applications/audio/jconvolver/default.nix @@ -0,0 +1,114 @@ +{ lib, stdenv, fetchurl, flac, unzip, fftwFloat, hybridreverb2, libclthreads, libjack2, libsndfile, zita-convolver }: + +stdenv.mkDerivation rec { + pname = "jconvolver"; + version = "1.1.0"; + + src = fetchurl { + url = "https://kokkinizita.linuxaudio.org/linuxaudio/downloads/${pname}-${version}.tar.bz2"; + sha256 = "03fq1rk5wyn32w0aaa9vqijnw9x9i0i7sv4nhsf949bk5lvi2nmc"; + }; + + reverbs = fetchurl { + url = "http://kokkinizita.linuxaudio.org/linuxaudio/downloads/jconvolver-reverbs.tar.bz2"; + sha256 = "127aj211xfqp37c94d9cn0mmwzbjkj3f6br5gr67ckqirvsdkndi"; + }; + weird = fetchurl { + url = "http://kokkinizita.linuxaudio.org/linuxaudio/downloads/weird.wav"; + sha256 = "14xchdikx5k8zlgwglrqi168vki3n3rwhn73dkbj5qwh2ndrlyrc"; + }; + + porihall-sf = fetchurl { + url = "http://legacy.spa.aalto.fi/projects/poririrs/wavs/sndfld.zip"; + sha256 = "0z1kmdin3vcy6wmnym9jlfh8hwvci9404hff02cb98iw2slxid42"; + }; + porihall-bd = fetchurl { + url = "http://legacy.spa.aalto.fi/projects/poririrs/wavs/bin_dfeq.zip"; + sha256 = "03m2brfxs851sag4z7kd71h6anv6hj34zcambwib0v1byg8vyplp"; + }; + porihall-c = fetchurl { + url = "http://legacy.spa.aalto.fi/projects/poririrs/wavs/cardioid.zip"; + sha256 = "0ilbfvb2kvg5z6zi0mf2k4n0vgpir3iz5fa53xw92c07fs0cx36w"; + }; + + spacenet-hm2 = fetchurl { + url = "https://webfiles.york.ac.uk/OPENAIR/IRs/hamilton-mausoleum/b-format/hm2_000_bformat_48k.wav"; + sha256 = "1icnzfzq3mccbmnvmvh22mw8g8dci4i9h7lgrpmycj58v3gnb1p5"; + }; + spacenet-lyd3 = fetchurl { + url = "https://webfiles.york.ac.uk/OPENAIR/IRs/st-andrews-church/b-format/lyd3_000_bformat_48k.wav"; + sha256 = "144cc0i91q5i72lwbxydx3nvxrd12j7clxjhwa2b8sf69ypz58wd"; + }; + spacenet-mh3 = fetchurl { + url = "https://webfiles.york.ac.uk/OPENAIR/IRs/maes-howe/b-format/mh3_000_bformat_48k.wav"; + sha256 = "1c6v9jlm88l1sx2383yivycdrs9jqfsfx8cpbkjg19v2x1dfns0b"; + }; + spacenet-minster1 = fetchurl { + url = "https://webfiles.york.ac.uk/OPENAIR/IRs/york-minster/b-format/minster1_bformat_48k.wav"; + sha256 = "1cs26pawjkv6qvwhfirfvzh21xvnmx8yh7f4xcr79cxv5c6hhnrw"; + }; + + nativeBuildInputs = [ flac unzip ]; + + buildInputs = [ + fftwFloat + hybridreverb2 + libclthreads + libjack2 + libsndfile + zita-convolver + ]; + + outputs = [ "bin" "out" "doc" ]; + + preConfigure = '' + cd source + ''; + + makeFlags = [ + "PREFIX=$(bin)" + ]; + + postInstall = '' + mkdir -p $doc/share/doc/jconvolver + cp -r ../[A-Z]* $doc/share/doc/jconvolver/ + + mkdir -p $out/share/jconvolver + cp -r ../config-files $out/share/jconvolver/ + cd $out/share/jconvolver + for conf in */*.conf */*/*.conf; do + if grep -q /audio/ $conf; then + substituteInPlace $conf --replace /audio/ $out/share/jconvolver/ + fi + done + substituteInPlace config-files/xtalk-cancel/EYCv2-44.conf --replace /cd "#/cd" + ln -s ${weird} config-files/weird.wav + + tar xf ${reverbs} + cd reverbs + unzip -d porihall ${porihall-sf} s1_r4_sf.wav + unzip -d porihall ${porihall-bd} s1_r3_bd.wav + unzip -d porihall ${porihall-c} s1_r3_c.wav + + mkdir spacenet + ln -s ${spacenet-hm2} spacenet/HM2_000_WXYZ_48k.amb + ln -s ${spacenet-lyd3} spacenet/Lyd3_000_WXYZ_48k.amb + ln -s ${spacenet-mh3} spacenet/MH3_000_WXYZ_48k.amb + ln -s ${spacenet-minster1} spacenet/Minster1_000_WXYZ_48k.amb + + mkdir -p hybridreverb-database/large_concert_hall/music/8m + for flac in ${hybridreverb2}/share/HybridReverb2/RIR_Database/large_concert_hall/music/8m/*.flac; do + flac --output-prefix=hybridreverb-database/large_concert_hall/music/8m/ -d $flac + done + ''; + + enableParallelBuilding = true; + + meta = with lib; { + description = "A JACK client and audio file convolver with reverb samples"; + homepage = "https://kokkinizita.linuxaudio.org/linuxaudio/"; + license = licenses.gpl2Plus; + maintainers = with maintainers; [ orivej ]; + platforms = platforms.linux; + }; +} diff --git a/pkgs/applications/audio/kapitonov-plugins-pack/default.nix b/pkgs/applications/audio/kapitonov-plugins-pack/default.nix index 6e5cc0d51916..655fc6a9608c 100644 --- a/pkgs/applications/audio/kapitonov-plugins-pack/default.nix +++ b/pkgs/applications/audio/kapitonov-plugins-pack/default.nix @@ -35,7 +35,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "Set of LADSPA and LV2 plugins for guitar sound processing"; - homepage = https://github.com/olegkapitonov/Kapitonov-Plugins-Pack; + homepage = "https://github.com/olegkapitonov/Kapitonov-Plugins-Pack"; license = licenses.gpl3; platforms = platforms.linux; maintainers = with maintainers; [ magnetophon ]; diff --git a/pkgs/applications/audio/mixxx/default.nix b/pkgs/applications/audio/mixxx/default.nix index 518c54dc48aa..bbd0e07a64a4 100644 --- a/pkgs/applications/audio/mixxx/default.nix +++ b/pkgs/applications/audio/mixxx/default.nix @@ -53,13 +53,13 @@ mkDerivation rec { pname = "mixxx"; - version = "2.3.0"; + version = "2.3.1"; src = fetchFromGitHub { owner = "mixxxdj"; repo = "mixxx"; rev = version; - sha256 = "18sx4l3zzbn5142xfv5bp0crdd615a5728fkprqacnx3zpa144x6"; + sha256 = "sha256-6M1qaRyRYWTIKqclewuD+RUVDdxVbBHcfpw2qYgO6BA="; }; nativeBuildInputs = [ cmake pkg-config ]; @@ -117,7 +117,7 @@ mkDerivation rec { # mixxx installs udev rules to DATADIR instead of SYSCONFDIR # let's disable this and install udev rules manually via postInstall - # see https://github.com/mixxxdj/mixxx/blob/2.3.0/CMakeLists.txt#L1381-L1392 + # see https://github.com/mixxxdj/mixxx/blob/2.3.1/CMakeLists.txt#L1381-L1392 cmakeFlags = [ "-DINSTALL_USER_UDEV_RULES=OFF" ]; diff --git a/pkgs/applications/audio/mmtc/default.nix b/pkgs/applications/audio/mmtc/default.nix index fc5a2e9b0350..578cecf09b09 100644 --- a/pkgs/applications/audio/mmtc/default.nix +++ b/pkgs/applications/audio/mmtc/default.nix @@ -1,27 +1,26 @@ -{ fetchFromGitHub, installShellFiles, lib, rustPlatform }: +{ lib, rustPlatform, fetchFromGitHub, installShellFiles }: rustPlatform.buildRustPackage rec { pname = "mmtc"; - version = "0.2.13"; + version = "0.2.14"; src = fetchFromGitHub { owner = "figsoda"; repo = pname; rev = "v${version}"; - sha256 = "0ag87hgdg6fvk80fgznba0xjlcajks5w5s6y8lvwhz9irn2kq2rz"; + sha256 = "sha256-g2JHY95vkG/Ep2eqz8guteF8fHUso/JuuVijNGkgykA="; }; - cargoSha256 = "0lkx0zj9xc0rlrq91l4wydzp430hxlrqyq7ii8wq2fcan8ln22lv"; + cargoSha256 = "sha256-tVjy/O5hfnQFC6to8VMGc39mEXhA5lwUIne6pVvDec0="; nativeBuildInputs = [ installShellFiles ]; preFixup = '' completions=($releaseDir/build/mmtc-*/out/completions) - installShellCompletion ''${completions[0]}/mmtc.{bash,fish} - installShellCompletion --zsh ''${completions[0]}/_mmtc + installShellCompletion $completions/mmtc.{bash,fish} --zsh $completions/_mmtc ''; - GEN_COMPLETIONS = "1"; + GEN_COMPLETIONS = 1; meta = with lib; { description = "Minimal mpd terminal client that aims to be simple yet highly configurable"; diff --git a/pkgs/applications/audio/mod-distortion/default.nix b/pkgs/applications/audio/mod-distortion/default.nix index 7c9f2acfd844..7e2b2bf6cfbd 100644 --- a/pkgs/applications/audio/mod-distortion/default.nix +++ b/pkgs/applications/audio/mod-distortion/default.nix @@ -1,8 +1,8 @@ { lib, stdenv, fetchFromGitHub, lv2 }: stdenv.mkDerivation { - pname = "mod-distortion-git"; - version = "2016-08-19"; + pname = "mod-distortion"; + version = "unstable-2016-08-19"; src = fetchFromGitHub { owner = "portalmod"; diff --git a/pkgs/applications/audio/netease-cloud-music-gtk/cargo-lock.patch b/pkgs/applications/audio/netease-cloud-music-gtk/cargo-lock.patch new file mode 100644 index 000000000000..7fc21c11ff7c --- /dev/null +++ b/pkgs/applications/audio/netease-cloud-music-gtk/cargo-lock.patch @@ -0,0 +1,2007 @@ +diff --git a/Cargo.lock b/Cargo.lock +new file mode 100644 +index 0000000..41d41a5 +--- /dev/null ++++ b/Cargo.lock +@@ -0,0 +1,2001 @@ ++# This file is automatically @generated by Cargo. ++# It is not intended for manual editing. ++version = 3 ++ ++[[package]] ++name = "aho-corasick" ++version = "0.7.18" ++source = "registry+https://github.com/rust-lang/crates.io-index" ++checksum = "1e37cfd5e7657ada45f742d6e99ca5788580b5c529dc78faf11ece6dc702656f" ++dependencies = [ ++ "memchr", ++] ++ ++[[package]] 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"0237232789cf037d5480773fe568aac745bfe2afbc11a863e97901780a6b47cc" ++ ++[[package]] ++name = "web-sys" ++version = "0.3.55" ++source = "registry+https://github.com/rust-lang/crates.io-index" ++checksum = "38eb105f1c59d9eaa6b5cdc92b859d85b926e82cb2e0945cd0c9259faa6fe9fb" ++dependencies = [ ++ "js-sys", ++ "wasm-bindgen", ++] ++ ++[[package]] ++name = "wepoll-ffi" ++version = "0.1.2" ++source = "registry+https://github.com/rust-lang/crates.io-index" ++checksum = "d743fdedc5c64377b5fc2bc036b01c7fd642205a0d96356034ae3404d49eb7fb" ++dependencies = [ ++ "cc", ++] ++ ++[[package]] ++name = "winapi" ++version = "0.3.9" ++source = "registry+https://github.com/rust-lang/crates.io-index" ++checksum = "5c839a674fcd7a98952e593242ea400abe93992746761e38641405d28b00f419" ++dependencies = [ ++ "winapi-i686-pc-windows-gnu", ++ "winapi-x86_64-pc-windows-gnu", ++] ++ ++[[package]] ++name = "winapi-i686-pc-windows-gnu" ++version = "0.4.0" ++source = "registry+https://github.com/rust-lang/crates.io-index" ++checksum = "ac3b87c63620426dd9b991e5ce0329eff545bccbbb34f3be09ff6fb6ab51b7b6" ++ ++[[package]] ++name = "winapi-x86_64-pc-windows-gnu" ++version = "0.4.0" ++source = "registry+https://github.com/rust-lang/crates.io-index" ++checksum = "712e227841d057c1ee1cd2fb22fa7e5a5461ae8e48fa2ca79ec42cfc1931183f" ++ ++[[package]] ++name = "xdg" ++version = "2.4.0" ++source = "registry+https://github.com/rust-lang/crates.io-index" ++checksum = "3a23fe958c70412687039c86f578938b4a0bb50ec788e96bce4d6ab00ddd5803" ++dependencies = [ ++ "dirs 3.0.2", ++] diff --git a/pkgs/applications/audio/netease-cloud-music-gtk/default.nix b/pkgs/applications/audio/netease-cloud-music-gtk/default.nix new file mode 100644 index 000000000000..76e1bc3923a8 --- /dev/null +++ b/pkgs/applications/audio/netease-cloud-music-gtk/default.nix @@ -0,0 +1,61 @@ +{ lib +, stdenv +, glib +, gtk3 +, curl +, dbus +, openssl +, gst_all_1 +, pkg-config +, rustPlatform +, wrapGAppsHook +, fetchurl +, fetchFromGitHub +, makeDesktopItem +}: +rustPlatform.buildRustPackage rec { + pname = "netease-cloud-music-gtk"; + version = "1.2.2"; + src = fetchFromGitHub { + owner = "gmg137"; + repo = "netease-cloud-music-gtk"; + rev = version; + sha256 = "sha256-42MaylfG5LY+TiYHWQMoh9CiVLShKXSBpMrxdWhujow="; + }; + cargoSha256 = "sha256-A9wIcESdaJwLY4g/QlOxMU5PBB9wjvIzaXBSqeiRJBM="; + cargoPatches = [ ./cargo-lock.patch ]; + + nativeBuildInputs = [ + glib + gtk3 + dbus + pkg-config + wrapGAppsHook + ]; + + buildInputs = [ + glib + gtk3 + curl + dbus + openssl + ] ++ (with gst_all_1; [ + gstreamer + gst-plugins-base + gst-plugins-good + gst-plugins-bad + gst-plugins-ugly + ]); + + postPatch = '' + install -D netease-cloud-music-gtk.desktop $out/share/applications/netease-cloud-music-gtk.desktop + install -D icons/netease-cloud-music-gtk.svg $out/share/icons/hicolor/scalable/apps/netease-cloud-music-gtk.svg + ''; + + meta = with lib; { + description = "netease-cloud-music-gtk is a Rust + GTK based netease cloud music player"; + homepage = "https://github.com/gmg137/netease-cloud-music-gtk"; + license = licenses.gpl3Plus; + maintainers = with maintainers; [ diffumist ]; + }; +} diff --git a/pkgs/applications/audio/netease-cloud-music-gtk/update-cargo-lock.sh b/pkgs/applications/audio/netease-cloud-music-gtk/update-cargo-lock.sh new file mode 100755 index 000000000000..75b04d1e77ca --- /dev/null +++ b/pkgs/applications/audio/netease-cloud-music-gtk/update-cargo-lock.sh @@ -0,0 +1,20 @@ +#!/usr/bin/env nix-shell +#!nix-shell -i bash -p coreutils ripgrep git cargo + +# Ref: https://github.com/NixOS/nixpkgs/blob/nixos-21.05/pkgs/applications/audio/netease-music-tui/update-cargo-lock.sh + +set -eu -vx + +here=$PWD +version=$(cat default.nix | rg '^ version = "' | cut -d '"' -f 2) +checkout=$(mktemp -d) + +git clone -b "$version" --depth=1 https://github.com/gmg137/netease-cloud-music-gtk "$checkout" +cd "$checkout" + +cargo generate-lockfile +git add -f Cargo.lock +git diff HEAD -- Cargo.lock > "$here"/cargo-lock.patch + +cd "$here" +rm -rf "$checkout" diff --git a/pkgs/applications/audio/nootka/unstable.nix b/pkgs/applications/audio/nootka/unstable.nix index edfb19483646..b5e820e83459 100644 --- a/pkgs/applications/audio/nootka/unstable.nix +++ b/pkgs/applications/audio/nootka/unstable.nix @@ -1,20 +1,38 @@ -{ lib, stdenv, fetchurl, cmake -, alsa-lib, fftwSinglePrec, libjack2, libpulseaudio, libvorbis, soundtouch -, qtbase, qtdeclarative, qtquickcontrols2 +{ lib +, stdenv +, fetchurl +, cmake +, alsa-lib +, fftwSinglePrec +, libjack2 +, libpulseaudio +, libvorbis +, soundtouch +, qtbase +, qtdeclarative +, qtquickcontrols2 }: stdenv.mkDerivation rec { - name = "nootka-1.7.0-beta1"; + pname = "nootka"; + version = "1.7.0-beta1"; src = fetchurl { - url = "mirror://sourceforge/nootka/${name}-source.tar.bz2"; + url = "mirror://sourceforge/nootka/nootka-${version}-source.tar.bz2"; sha256 = "13b50vnpr1zx2mrgkc8fmhsyfa19rqq1rksvn31145dy6fk1f3gc"; }; nativeBuildInputs = [ cmake ]; buildInputs = [ - alsa-lib fftwSinglePrec libjack2 libpulseaudio libvorbis soundtouch - qtbase qtdeclarative qtquickcontrols2 + alsa-lib + fftwSinglePrec + libjack2 + libpulseaudio + libvorbis + soundtouch + qtbase + qtdeclarative + qtquickcontrols2 ]; dontWrapQtApps = true; diff --git a/pkgs/applications/audio/orca-c/default.nix b/pkgs/applications/audio/orca-c/default.nix index 4bad49603373..420055884b45 100644 --- a/pkgs/applications/audio/orca-c/default.nix +++ b/pkgs/applications/audio/orca-c/default.nix @@ -1,8 +1,7 @@ { lib, stdenv, fetchgit, ncurses, portmidi }: stdenv.mkDerivation { pname = "orca-c"; - - version = "git-2021-02-13"; + version = "unstable-2021-02-13"; src = fetchgit { url = "https://git.sr.ht/~rabbits/orca"; diff --git a/pkgs/applications/audio/paprefs/default.nix b/pkgs/applications/audio/paprefs/default.nix index 64e403001a3d..31ccb212cd51 100644 --- a/pkgs/applications/audio/paprefs/default.nix +++ b/pkgs/applications/audio/paprefs/default.nix @@ -1,5 +1,6 @@ { fetchurl -, lib, stdenv +, lib +, stdenv , meson , ninja , gettext @@ -11,10 +12,11 @@ }: stdenv.mkDerivation rec { - name = "paprefs-1.1"; + pname = "paprefs"; + version = "1.1"; src = fetchurl { - url = "https://freedesktop.org/software/pulseaudio/paprefs/${name}.tar.xz"; + url = "https://freedesktop.org/software/pulseaudio/paprefs/paprefs-${version}.tar.xz"; sha256 = "189z5p20hk0xv9vwvym293503j4pwl03xqk9hl7cl6dwgv0l7wkf"; }; diff --git a/pkgs/applications/audio/plexamp/default.nix b/pkgs/applications/audio/plexamp/default.nix index 33df06e77e4c..b5cf068d5691 100644 --- a/pkgs/applications/audio/plexamp/default.nix +++ b/pkgs/applications/audio/plexamp/default.nix @@ -2,12 +2,12 @@ let pname = "plexamp"; - version = "3.7.1"; + version = "3.8.2"; src = fetchurl { url = "https://plexamp.plex.tv/plexamp.plex.tv/desktop/Plexamp-${version}.AppImage"; name="${pname}-${version}.AppImage"; - sha512 = "jKuuM1vQANGYE2W0OGl+35mB1ve5K/xPcBTk2O1azPRBDlRVU0DHRSQy2T71kwhxES1ASRt91qAV/dATk6oUkw=="; + sha512 = "JVzfWlrX21KHw4tSrGpCYqqoWFudnyFG4YnHKsnIUtxLDkjyQA8N2/OrDIR+SlK/b0RRs9KZ4lbqQMX8PXUHsg=="; }; appimageContents = appimageTools.extractType2 { @@ -33,7 +33,7 @@ in appimageTools.wrapType2 { meta = with lib; { description = "A beautiful Plex music player for audiophiles, curators, and hipsters"; homepage = "https://plexamp.com/"; - changelog = "https://forums.plex.tv/t/plexamp-release-notes/221280/32"; + changelog = "https://forums.plex.tv/t/plexamp-release-notes/221280/35"; license = licenses.unfree; maintainers = with maintainers; [ killercup synthetica ]; platforms = [ "x86_64-linux" ]; diff --git a/pkgs/applications/audio/praat/default.nix b/pkgs/applications/audio/praat/default.nix index 75a706cff1ed..ac7f4206dbeb 100644 --- a/pkgs/applications/audio/praat/default.nix +++ b/pkgs/applications/audio/praat/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "praat"; - version = "6.1.53"; + version = "6.1.55"; src = fetchFromGitHub { owner = "praat"; repo = "praat"; rev = "v${version}"; - sha256 = "sha256-4GOVrKVHl/Cj0PNx+rcLESn5fbyIsnzaheMOFLlEVMU="; + sha256 = "sha256-PQVbrohIlmzKcG/8TzOBgyQWWaMH88voMNWAqEfyUWI="; }; configurePhase = '' diff --git a/pkgs/applications/audio/pt2-clone/default.nix b/pkgs/applications/audio/pt2-clone/default.nix index 606f80d1e41e..e5a97aee86cd 100644 --- a/pkgs/applications/audio/pt2-clone/default.nix +++ b/pkgs/applications/audio/pt2-clone/default.nix @@ -8,13 +8,13 @@ stdenv.mkDerivation rec { pname = "pt2-clone"; - version = "1.36"; + version = "1.37"; src = fetchFromGitHub { owner = "8bitbubsy"; repo = "pt2-clone"; rev = "v${version}"; - sha256 = "sha256-QyhBoWCkj7iYXAFsyVH6+XH2P/MQEXZQfAcUDu4Rtco="; + sha256 = "sha256-r9H+qF542j2qjmOEjJLAtnMU7SkJBJB8nH39zhkZu9M="; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/applications/audio/snapcast/default.nix b/pkgs/applications/audio/snapcast/default.nix index 0299f66191ed..d2b6ba07d2eb 100644 --- a/pkgs/applications/audio/snapcast/default.nix +++ b/pkgs/applications/audio/snapcast/default.nix @@ -1,7 +1,10 @@ { stdenv, lib, fetchFromGitHub, cmake, pkg-config , alsa-lib, asio, avahi, boost17x, flac, libogg, libvorbis, soxr +, pulseaudioSupport ? false, libpulseaudio , nixosTests }: +assert pulseaudioSupport -> libpulseaudio != null; + let dependency = { name, version, sha256 }: @@ -50,7 +53,7 @@ stdenv.mkDerivation rec { boost17x alsa-lib asio avahi flac libogg libvorbis aixlog popl soxr - ]; + ] ++ lib.optional pulseaudioSupport libpulseaudio; # Upstream systemd unit files are pretty awful, so we provide our own in a # NixOS module. It might make sense to get that upstreamed... diff --git a/pkgs/applications/audio/spotify/default.nix b/pkgs/applications/audio/spotify/default.nix index c25276ff6e19..f38bd678d9ef 100644 --- a/pkgs/applications/audio/spotify/default.nix +++ b/pkgs/applications/audio/spotify/default.nix @@ -10,14 +10,14 @@ let # If an update breaks things, one of those might have valuable info: # https://aur.archlinux.org/packages/spotify/ # https://community.spotify.com/t5/Desktop-Linux - version = "1.1.68.632.g2b11de83"; + version = "1.1.72.439.gc253025e"; # To get the latest stable revision: # curl -H 'X-Ubuntu-Series: 16' 'https://api.snapcraft.io/api/v1/snaps/details/spotify?channel=stable' | jq '.download_url,.version,.last_updated' # To get general information: # curl -H 'Snap-Device-Series: 16' 'https://api.snapcraft.io/v2/snaps/info/spotify' | jq '.' # More examples of api usage: # https://github.com/canonical-websites/snapcraft.io/blob/master/webapp/publisher/snaps/views.py - rev = "53"; + rev = "56"; deps = [ alsa-lib @@ -80,7 +80,7 @@ stdenv.mkDerivation { # https://community.spotify.com/t5/Desktop-Linux/Redistribute-Spotify-on-Linux-Distributions/td-p/1695334 src = fetchurl { url = "https://api.snapcraft.io/api/v1/snaps/download/pOBIoZ2LrCB3rDohMxoYGnbN14EHOgD7_${rev}.snap"; - sha512 = "ed991691c99fe97ed9ff5d0f5cc9a8883c176fa3b3054293c37d545abbb895c6260afdf1c8c0828d62c36ea7ab384e166b6151effb4614c93e4fa712319a08a3"; + sha512 = "b2bd3d49a18dfebaa4660f9c39d11d57fb80a4ef15ec7b7973e3cc07be74f74aebd2d8c66360d79fe778244c533ed02f9dfca4085f99aae0e5faae7c003ba4ef"; }; nativeBuildInputs = [ makeWrapper wrapGAppsHook squashfsTools ]; diff --git a/pkgs/applications/audio/sublime-music/default.nix b/pkgs/applications/audio/sublime-music/default.nix index 5c9250b45e03..3f7e1e038f8e 100644 --- a/pkgs/applications/audio/sublime-music/default.nix +++ b/pkgs/applications/audio/sublime-music/default.nix @@ -15,14 +15,14 @@ python3Packages.buildPythonApplication rec { pname = "sublime-music"; - version = "0.11.13"; + version = "0.11.16"; format = "pyproject"; src = fetchFromGitLab { owner = "sublime-music"; repo = pname; rev = "v${version}"; - sha256 = "sha256-NzbQtRcsRVppyuG1UuS3IidSnniUOavf5YoAf/kcZqw="; + sha256 = "sha256-n77mTgElwwFaX3WQL8tZzbkPwnsyQ08OW9imSOjpBlg="; }; nativeBuildInputs = [ @@ -57,19 +57,26 @@ python3Packages.buildPythonApplication rec { ++ lib.optional serverSupport bottle ; + postPatch = '' + sed -i "/--cov/d" setup.cfg + sed -i "/--no-cov-on-fail/d" setup.cfg + ''; + # hook for gobject-introspection doesn't like strictDeps # https://github.com/NixOS/nixpkgs/issues/56943 strictDeps = false; - # Use the test suite provided by the upstream project. checkInputs = with python3Packages; [ pytest - pytest-cov ]; - checkPhase = "${xvfb-run}/bin/xvfb-run pytest"; - # Also run the python import check for sanity - pythonImportsCheck = [ "sublime_music" ]; + checkPhase = '' + ${xvfb-run}/bin/xvfb-run pytest + ''; + + pythonImportsCheck = [ + "sublime_music" + ]; postInstall = '' install -Dm444 sublime-music.desktop -t $out/share/applications diff --git a/pkgs/applications/audio/surge-XT/default.nix b/pkgs/applications/audio/surge-XT/default.nix new file mode 100644 index 000000000000..6445723d7781 --- /dev/null +++ b/pkgs/applications/audio/surge-XT/default.nix @@ -0,0 +1,33 @@ +{ stdenv, lib, fetchFromGitHub, cmake, pkg-config, cairo, libxkbcommon, xcbutilcursor, xcbutilkeysyms, xcbutil, libXrandr, libXinerama, libXcursor, alsa-lib, libjack2 +}: + +stdenv.mkDerivation rec { + pname = "surge-XT"; + version = "unstable-2021-11-07"; + + src = fetchFromGitHub { + owner = "surge-synthesizer"; + repo = "surge"; + rev = "ed93833eb44b177c977e3a7b878ffdd9bf9f24e5"; + sha256 = "0b164659ksl6h5nn7jja5zccx2mwzibqs6b7hg8l98gpcy9fi5r2"; + fetchSubmodules = true; + }; + + nativeBuildInputs = [ cmake pkg-config ]; + buildInputs = [ cairo libxkbcommon xcbutilcursor xcbutilkeysyms xcbutil libXrandr libXinerama libXcursor alsa-lib libjack2 ]; + + installPhase = '' + cd .. + cmake --build build --config Release --target install + ''; + + doInstallCheck = false; + + meta = with lib; { + description = "LV2 & VST3 synthesizer plug-in (previously released as Vember Audio Surge)"; + homepage = "https://surge-synthesizer.github.io"; + license = licenses.gpl3; + platforms = [ "x86_64-linux" ]; + maintainers = with maintainers; [ magnetophon orivej ]; + }; +} diff --git a/pkgs/applications/audio/tagutil/default.nix b/pkgs/applications/audio/tagutil/default.nix index 802cd00087a8..e5076188301a 100644 --- a/pkgs/applications/audio/tagutil/default.nix +++ b/pkgs/applications/audio/tagutil/default.nix @@ -30,6 +30,11 @@ stdenv.mkDerivation rec { zlib ]; + postPatch = '' + substituteInPlace CMakeLists.txt \ + --replace "-o aslr" "" + ''; + meta = with lib; { description = "Scriptable music files tags tool and editor"; homepage = "https://github.com/kaworu/tagutil"; diff --git a/pkgs/applications/audio/tenacity/default.nix b/pkgs/applications/audio/tenacity/default.nix new file mode 100644 index 000000000000..160243cdf34f --- /dev/null +++ b/pkgs/applications/audio/tenacity/default.nix @@ -0,0 +1,148 @@ +{ stdenv +, lib +, fetchFromSourcehut +, cmake +, wxGTK +, pkg-config +, python3 +, gettext +, glib +, file +, lame +, libvorbis +, libmad +, libjack2 +, lv2 +, lilv +, makeWrapper +, serd +, sord +, sqlite +, sratom +, suil +, alsa-lib +, libsndfile +, soxr +, flac +, twolame +, expat +, libid3tag +, libopus +, ffmpeg +, soundtouch +, pcre +, portaudio +, linuxHeaders +, at-spi2-core +, dbus +, epoxy +, libXdmcp +, libXtst +, libpthreadstubs +, libselinux +, libsepol +, libxkbcommon +, util-linux +}: + +stdenv.mkDerivation rec { + pname = "tenacity"; + version = "unstable-2021-10-18"; + + src = fetchFromSourcehut { + owner = "~tenacity"; + repo = "tenacity"; + rev = "697c0e764ccb19c1e2f3073ae08ecdac7aa710e4"; + sha256 = "1fc9xz8lyl8si08wkzncpxq92vizan60c3640qr4kbnxg7vi2iy4"; + }; + + postPatch = '' + touch src/RevisionIdent.h + + substituteInPlace src/FileNames.cpp \ + --replace /usr/include/linux/magic.h ${linuxHeaders}/include/linux/magic.h + ''; + + postFixup = '' + rm $out/tenacity + wrapProgram "$out/bin/tenacity" \ + --suffix AUDACITY_PATH : "$out/share/tenacity" \ + --suffix AUDACITY_MODULES_PATH : "$out/lib/tenacity/modules" \ + --prefix LD_LIBRARY_PATH : "$out/lib/tenacity" \ + --prefix XDG_DATA_DIRS : "$out/share:$GSETTINGS_SCHEMAS_PATH" + ''; + + NIX_CFLAGS_COMPILE = "-D GIT_DESCRIBE=\"\""; + + # tenacity only looks for ffmpeg at runtime, so we need to link it in manually + NIX_LDFLAGS = toString [ + "-lavcodec" + "-lavdevice" + "-lavfilter" + "-lavformat" + "-lavresample" + "-lavutil" + "-lpostproc" + "-lswresample" + "-lswscale" + ]; + + nativeBuildInputs = [ + cmake + gettext + makeWrapper + pkg-config + python3 + ] ++ lib.optionals stdenv.isLinux [ + linuxHeaders + ]; + + buildInputs = [ + alsa-lib + expat + ffmpeg + file + flac + glib + lame + libid3tag + libjack2 + libmad + libopus + libsndfile + libvorbis + lilv + lv2 + pcre + portaudio + serd + sord + soundtouch + soxr + sqlite + sratom + suil + twolame + wxGTK + wxGTK.gtk + ] ++ lib.optionals stdenv.isLinux [ + at-spi2-core + dbus + epoxy + libXdmcp + libXtst + libpthreadstubs + libxkbcommon + libselinux + libsepol + util-linux + ]; + + meta = with lib; { + description = "Sound editor with graphical UI"; + homepage = "https://tenacityaudio.org/"; + license = licenses.gpl2Plus; + maintainers = with maintainers; [ irenes lheckemann ]; + platforms = platforms.linux; + }; +} diff --git a/pkgs/applications/audio/tonelib-jam/default.nix b/pkgs/applications/audio/tonelib-jam/default.nix index 54ed7a977f39..1c0d51ed88be 100644 --- a/pkgs/applications/audio/tonelib-jam/default.nix +++ b/pkgs/applications/audio/tonelib-jam/default.nix @@ -56,6 +56,6 @@ stdenv.mkDerivation rec { homepage = "https://tonelib.net/"; license = licenses.unfree; maintainers = with maintainers; [ dan4ik605743 ]; - platforms = platforms.linux; + platforms = [ "x86_64-linux" ]; }; } diff --git a/pkgs/applications/audio/tonelib-zoom/default.nix b/pkgs/applications/audio/tonelib-zoom/default.nix index 2eef1f7bd609..41539503e020 100644 --- a/pkgs/applications/audio/tonelib-zoom/default.nix +++ b/pkgs/applications/audio/tonelib-zoom/default.nix @@ -1,12 +1,18 @@ -{ stdenv -, dpkg -, lib -, autoPatchelfHook +{ lib +, stdenv , fetchurl -, webkitgtk -, libjack2 +, autoPatchelfHook +, dpkg , alsa-lib +, freetype +, libglvnd , curl +, libXcursor +, libXinerama +, libXrandr +, libXrender +, libjack2 +, webkitgtk }: stdenv.mkDerivation rec { @@ -18,36 +24,40 @@ stdenv.mkDerivation rec { sha256 = "sha256-4q2vM0/q7o/FracnO2xxnr27opqfVQoN7fsqTD9Tr/c="; }; - buildInputs = [ - dpkg - webkitgtk - libjack2 - alsa-lib - ]; - nativeBuildInputs = [ autoPatchelfHook + dpkg ]; - unpackPhase = '' - mkdir -p $TMP/ $out/ - dpkg -x $src $TMP - ''; + buildInputs = [ + stdenv.cc.cc.lib + alsa-lib + freetype + libglvnd + webkitgtk + ] ++ runtimeDependencies; + + runtimeDependencies = map lib.getLib [ + curl + libXcursor + libXinerama + libXrandr + libXrender + libjack2 + ]; + + unpackCmd = "dpkg -x $curSrc source"; installPhase = '' - cp -R $TMP/usr/* $out/ - mv $out/bin/ToneLib-Zoom $out/bin/tonelib-zoom + mv usr $out + substituteInPlace $out/share/applications/ToneLib-Zoom.desktop --replace /usr/ $out/ ''; - runtimeDependencies = [ - (lib.getLib curl) - ]; - meta = with lib; { description = "ToneLib Zoom – change and save all the settings in your Zoom(r) guitar pedal"; homepage = "https://tonelib.net/"; license = licenses.unfree; maintainers = with maintainers; [ dan4ik605743 ]; - platforms = platforms.linux; + platforms = [ "x86_64-linux" ]; }; } diff --git a/pkgs/applications/audio/vocal/default.nix b/pkgs/applications/audio/vocal/default.nix index a2fea468de9d..3d6f3aef9e1b 100644 --- a/pkgs/applications/audio/vocal/default.nix +++ b/pkgs/applications/audio/vocal/default.nix @@ -88,5 +88,6 @@ stdenv.mkDerivation rec { license = licenses.gpl3Plus; maintainers = with maintainers; [ ] ++ teams.pantheon.members; platforms = platforms.linux; + mainProgram = "com.github.needleandthread.vocal"; }; } diff --git a/pkgs/applications/audio/wavegain/default.nix b/pkgs/applications/audio/wavegain/default.nix index f4ef7f6d8a57..1820ed2def1c 100644 --- a/pkgs/applications/audio/wavegain/default.nix +++ b/pkgs/applications/audio/wavegain/default.nix @@ -1,7 +1,9 @@ { lib, stdenv, fetchFromGitHub }: stdenv.mkDerivation { - name = "wavegain-1.3.1"; + pname = "wavegain"; + version = "1.3.1"; + src = fetchFromGitHub { owner = "MestreLion"; repo = "wavegain"; diff --git a/pkgs/applications/audio/x42-avldrums/default.nix b/pkgs/applications/audio/x42-avldrums/default.nix index 31ef68714f6a..d698ef68da5c 100644 --- a/pkgs/applications/audio/x42-avldrums/default.nix +++ b/pkgs/applications/audio/x42-avldrums/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "x42-avldrums"; - version = "0.4.1"; + version = "0.4.2"; src = fetchFromGitHub { owner = "x42"; repo = "avldrums.lv2"; rev = "v${version}"; - sha256 = "1vwdp3d8qzd493qa99ddya7iql67bbfxmbcl8hk96lxif2lhmyws"; + sha256 = "sha256-L9rLSHHQIM6PqZ397TIxR6O1N9GKAQtDfWCofV5R85E="; fetchSubmodules = true; }; diff --git a/pkgs/applications/audio/x42-plugins/default.nix b/pkgs/applications/audio/x42-plugins/default.nix index 557802a8a0fb..70353e2497f1 100644 --- a/pkgs/applications/audio/x42-plugins/default.nix +++ b/pkgs/applications/audio/x42-plugins/default.nix @@ -3,12 +3,12 @@ , libGLU, lv2, gtk2, cairo, pango, fftwFloat, zita-convolver }: stdenv.mkDerivation rec { - version = "20210714"; + version = "20211016"; pname = "x42-plugins"; src = fetchurl { url = "https://gareus.org/misc/x42-plugins/${pname}-${version}.tar.xz"; - sha256 = "sha256-X389bA+cf3N5eJpAlpDn/CJQ6xM4qzrBQ47fYPIyIHk="; + sha256 = "sha256-Z2lXaJweOPB9hWOuy2cx1P9/CAJ+IMc7JtPDKAg2boU="; }; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/applications/audio/zam-plugins/default.nix b/pkgs/applications/audio/zam-plugins/default.nix index 777ac79a22da..a07bfa60b054 100644 --- a/pkgs/applications/audio/zam-plugins/default.nix +++ b/pkgs/applications/audio/zam-plugins/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "zam-plugins"; - version = "3.13"; + version = "3.14"; src = fetchFromGitHub { owner = "zamaudio"; repo = pname; rev = version; - sha256 = "02blg0iqich4vx5z1ahj6avkh83yqszdiq83p9jd5qwm0i4llqjq"; + sha256 = "sha256-zlANfFuEXQdXlSu4CuXNyChiuV7wkumaOJqgthl6Y9Q="; fetchSubmodules = true; }; diff --git a/pkgs/applications/audio/zrythm/default.nix b/pkgs/applications/audio/zrythm/default.nix new file mode 100644 index 000000000000..ee6eef5527f9 --- /dev/null +++ b/pkgs/applications/audio/zrythm/default.nix @@ -0,0 +1,169 @@ +{ stdenv +, lib +, fetchFromGitHub +, SDL2 +, alsa-lib +, libaudec +, bash +, bash-completion +, breeze-icons +, carla +, chromaprint +, cmake +, curl +, dconf +, epoxy +, ffmpeg +, fftw +, fftwFloat +, flex +, glib +, gtk3 +, gtksourceview3 +, guile +, graphviz +, help2man +, json-glib +, jq +, libbacktrace +, libcyaml +, libgtop +, libjack2 +, libpulseaudio +, libsamplerate +, libsndfile +, libsoundio +, libxml2 +, libyaml +, lilv +, lv2 +, meson +, ninja +, pandoc +, pcre +, pcre2 +, pkg-config +, python3 +, reproc +, rtaudio +, rtmidi +, rubberband +, serd +, sord +, sratom +, texi2html +, wrapGAppsHook +, xdg-utils +, xxHash +, vamp-plugin-sdk +, zstd +}: + +stdenv.mkDerivation rec { + pname = "zrythm"; + version = "1.0.0-alpha.26.0.13"; + + src = fetchFromGitHub { + owner = pname; + repo = pname; + rev = "v${version}"; + sha256 = "sha256-dkXlkJ+qlfxV9Bv2UvZZa2iRVm8tgpK4JxkWL2Jeq48="; + }; + + nativeBuildInputs = [ + help2man + jq + libaudec + libxml2 + meson + ninja + pandoc + pkg-config + python3 + python3.pkgs.sphinx + texi2html + wrapGAppsHook + cmake + ]; + + buildInputs = [ + SDL2 + alsa-lib + bash-completion + carla + chromaprint + curl + dconf + epoxy + ffmpeg + fftw + fftwFloat + flex + breeze-icons + glib + gtk3 + gtksourceview3 + graphviz + guile + json-glib + libbacktrace + libcyaml + libgtop + libjack2 + libpulseaudio + libsamplerate + libsndfile + libsoundio + libyaml + lilv + lv2 + pcre + pcre2 + reproc + rtaudio + rtmidi + rubberband + serd + sord + sratom + vamp-plugin-sdk + xdg-utils + xxHash + zstd + ]; + + mesonFlags = [ + "-Denable_ffmpeg=true" + "-Denable_rtmidi=true" + "-Denable_rtaudio=true" + "-Denable_sdl=true" + "-Dmanpage=true" + # "-Duser_manual=true" # needs sphinx-intl + "-Dlsp_dsp=disabled" + "-Db_lto=false" + ]; + + NIX_LDFLAGS = '' + -lfftw3_threads -lfftw3f_threads + ''; + + postPatch = '' + chmod +x scripts/meson-post-install.sh + patchShebangs ext/sh-manpage-completions/run.sh scripts/generic_guile_wrap.sh \ + scripts/meson-post-install.sh tools/check_have_unlimited_memlock.sh + ''; + + preFixup = '' + gappsWrapperArgs+=( + --prefix GSETTINGS_SCHEMA_DIR : "$out/share/gsettings-schemas/${pname}-${version}/glib-2.0/schemas/" + ) + ''; + + meta = with lib; { + homepage = "https://www.zrythm.org"; + description = "Highly automated and intuitive digital audio workstation"; + maintainers = with maintainers; [ tshaynik magnetophon ]; + platforms = platforms.linux; + license = licenses.agpl3Plus; + }; +} diff --git a/pkgs/applications/backup/areca/default.nix b/pkgs/applications/backup/areca/default.nix index d16fc0f85c55..816646ab6f12 100644 --- a/pkgs/applications/backup/areca/default.nix +++ b/pkgs/applications/backup/areca/default.nix @@ -1,10 +1,11 @@ { lib, stdenv, fetchurl, ant, jre, jdk, swt, acl, attr }: -stdenv.mkDerivation { - name = "areca-7.5"; +stdenv.mkDerivation rec { + pname = "areca"; + version = "7.5"; src = fetchurl { - url = "mirror://sourceforge/project/areca/areca-stable/areca-7.5/areca-7.5-src.tar.gz"; + url = "mirror://sourceforge/project/areca/areca-stable/areca-${version}/areca-${version}-src.tar.gz"; sha256 = "1q4ha9s96c1syplxm04bh1v1gvjq16l4pa8w25w95d2ywwvyq1xb"; }; diff --git a/pkgs/applications/blockchains/alfis/default.nix b/pkgs/applications/blockchains/alfis/default.nix index 7a808d2c72e9..0738661c0596 100644 --- a/pkgs/applications/blockchains/alfis/default.nix +++ b/pkgs/applications/blockchains/alfis/default.nix @@ -1,6 +1,5 @@ -{ stdenv, lib, fetchFromGitHub, rustPlatform, pkg-config -, withGui ? true, webkitgtk, Cocoa, WebKit -}: +{ stdenv, lib, fetchFromGitHub, rustPlatform, pkg-config, withGui ? true +, webkitgtk, Cocoa, WebKit, zenity, makeWrapper }: rustPlatform.buildRustPackage rec { pname = "alfis"; @@ -27,10 +26,15 @@ rustPlatform.buildRustPackage rec { "--skip=dns::client::tests::test_udp_client" ]; - nativeBuildInputs = [ pkg-config ]; + nativeBuildInputs = [ pkg-config makeWrapper ]; buildInputs = lib.optional (withGui && stdenv.isLinux) webkitgtk ++ lib.optionals (withGui && stdenv.isDarwin) [ Cocoa WebKit ]; + postInstall = lib.optionalString (withGui && stdenv.isLinux) '' + wrapProgram $out/bin/alfis \ + --prefix PATH : ${lib.makeBinPath [ zenity ]} + ''; + meta = with lib; { description = "Alternative Free Identity System"; homepage = "https://alfis.name"; diff --git a/pkgs/applications/blockchains/bitcoin/default.nix b/pkgs/applications/blockchains/bitcoin/default.nix index 7a0237ed2b15..7253d3dff377 100644 --- a/pkgs/applications/blockchains/bitcoin/default.nix +++ b/pkgs/applications/blockchains/bitcoin/default.nix @@ -5,6 +5,7 @@ , pkg-config , util-linux , hexdump +, autoSignDarwinBinariesHook , wrapQtAppsHook ? null , boost , libevent @@ -47,6 +48,7 @@ stdenv.mkDerivation rec { [ autoreconfHook pkg-config ] ++ optionals stdenv.isLinux [ util-linux ] ++ optionals stdenv.isDarwin [ hexdump ] + ++ optionals (stdenv.isDarwin && stdenv.isAarch64) [ autoSignDarwinBinariesHook ] ++ optionals withGui [ wrapQtAppsHook ]; buildInputs = [ boost libevent miniupnpc zeromq zlib ] diff --git a/pkgs/applications/blockchains/btcpayserver/default.nix b/pkgs/applications/blockchains/btcpayserver/default.nix index 23a0e4791609..0d9da9b3cedc 100644 --- a/pkgs/applications/blockchains/btcpayserver/default.nix +++ b/pkgs/applications/blockchains/btcpayserver/default.nix @@ -3,13 +3,13 @@ buildDotnetModule rec { pname = "btcpayserver"; - version = "1.3.1"; + version = "1.3.3"; src = fetchFromGitHub { owner = pname; repo = pname; rev = "v${version}"; - sha256 = "sha256-gJvUW/U+O83Q0VDo6a5VkWx2RuofMNs/mPn/hnM2XiE="; + sha256 = "sha256-IBdQlVZx7Bt4y7B7FvHJihHUWO15a89hs+SGwcobDqY="; }; projectFile = "BTCPayServer/BTCPayServer.csproj"; diff --git a/pkgs/applications/blockchains/btcpayserver/deps.nix b/pkgs/applications/blockchains/btcpayserver/deps.nix index 2cb07e9954fc..c3406494aeb4 100644 --- a/pkgs/applications/blockchains/btcpayserver/deps.nix +++ b/pkgs/applications/blockchains/btcpayserver/deps.nix @@ -31,8 +31,8 @@ }) (fetchNuGet { name = "BTCPayServer.Lightning.All"; - version = "1.2.13"; - sha256 = "16nhahb6bnjwhw3wh044zfkqpb5k40kyhdazs2h6y4phjhm5hq2r"; + version = "1.2.14"; + sha256 = "0avb0jlisx1nv0ary2nc82aamn95qmrrqshwbk8szzjqgvxzv4k2"; }) (fetchNuGet { name = "BTCPayServer.Lightning.Charge"; @@ -44,11 +44,6 @@ version = "1.2.9"; sha256 = "0r855lnh6cyj6hpwhdpdhpp39332v7lmk93ri2q8gs9lsnwdyjr8"; }) - (fetchNuGet { - name = "BTCPayServer.Lightning.Common"; - version = "1.2.6"; - sha256 = "09p2ks1qgy6jnpcfwgdnxvldyyadwnh3mwmq9z89vvzmmgs19xkk"; - }) (fetchNuGet { name = "BTCPayServer.Lightning.Common"; version = "1.2.7"; @@ -61,8 +56,8 @@ }) (fetchNuGet { name = "BTCPayServer.Lightning.LND"; - version = "1.2.9"; - sha256 = "1zyr58kwdyb02dfgxza73fqvzcjlf59msllmf06anl9im4pqcjx6"; + version = "1.2.10"; + sha256 = "10m8kw7598l9ap6y17znvm43cz5ca6qxbrh105knyb6hfzpsyqwp"; }) (fetchNuGet { name = "BTCPayServer.Lightning.Ptarmigan"; diff --git a/pkgs/applications/blockchains/chia-plotter/default.nix b/pkgs/applications/blockchains/chia-plotter/default.nix index 39f2e3cb0edc..b576cd2373ce 100644 --- a/pkgs/applications/blockchains/chia-plotter/default.nix +++ b/pkgs/applications/blockchains/chia-plotter/default.nix @@ -9,13 +9,13 @@ stdenv.mkDerivation { pname = "chia-plotter"; - version = "unstable-2021-07-12"; + version = "1.1.7"; src = fetchFromGitHub { owner = "madMAx43v3r"; repo = "chia-plotter"; - rev = "974d6e5f1440f68c48492122ca33828a98864dfc"; - sha256 = "0dliswvqmi3wq9w8jp0sb0z74n5k37608sig6r60z206g2bwhjja"; + rev = "18cad340858f0dbcc8dafd0bda1ce1af0fe58c65"; + sha256 = "sha256-lXjeqcjn3+LtnVYngdM1T3on7V7wez4oOAZ0RpKJXMM="; fetchSubmodules = true; }; diff --git a/pkgs/applications/blockchains/chia/default.nix b/pkgs/applications/blockchains/chia/default.nix index 83d9cee9ec6c..a62d7f95d606 100644 --- a/pkgs/applications/blockchains/chia/default.nix +++ b/pkgs/applications/blockchains/chia/default.nix @@ -20,7 +20,7 @@ let chia = python3Packages.buildPythonApplication rec { substituteInPlace setup.py \ --replace "==" ">=" - ln -sf ${cacert}/etc/ssl/certs/ca-bundle.crt mozilla-ca/cacert.pem + cp ${cacert}/etc/ssl/certs/ca-bundle.crt mozilla-ca/cacert.pem ''; nativeBuildInputs = [ diff --git a/pkgs/applications/blockchains/clightning/default.nix b/pkgs/applications/blockchains/clightning/default.nix index 0cec96b7a6ee..04f3c1fcbc84 100644 --- a/pkgs/applications/blockchains/clightning/default.nix +++ b/pkgs/applications/blockchains/clightning/default.nix @@ -16,15 +16,15 @@ , zlib }: let - py3 = python3.withPackages (p: [ p.Mako ]); + py3 = python3.withPackages (p: [ p.Mako p.mrkd ]); in stdenv.mkDerivation rec { pname = "clightning"; - version = "0.10.1"; + version = "0.10.2"; src = fetchurl { url = "https://github.com/ElementsProject/lightning/releases/download/v${version}/clightning-v${version}.zip"; - sha256 = "9271e9e89d60332b66afedbf8d6eab2a4a488782ab400ee1f60667d73c5a9a96"; + sha256 = "3c9dcb686217b2efe0e988e90b95777c4591e3335e259e01a94af87e0bf01809"; }; nativeBuildInputs = [ autogen autoconf automake gettext libtool pkg-config py3 unzip which ]; diff --git a/pkgs/applications/blockchains/ledger-live-desktop/default.nix b/pkgs/applications/blockchains/ledger-live-desktop/default.nix index a1ce67abf9ae..636d377ebe48 100644 --- a/pkgs/applications/blockchains/ledger-live-desktop/default.nix +++ b/pkgs/applications/blockchains/ledger-live-desktop/default.nix @@ -2,12 +2,12 @@ let pname = "ledger-live-desktop"; - version = "2.34.3"; + version = "2.34.4"; name = "${pname}-${version}"; src = fetchurl { url = "https://github.com/LedgerHQ/${pname}/releases/download/v${version}/${pname}-${version}-linux-x86_64.AppImage"; - sha256 = "07r7gfn44c4bdcq9rgs6v4frrl2g004lh9lcsrj6rbqy6949r9j2"; + sha256 = "00zl7ywmkbhwzkj7p618rin5pd0ix8cas5q1b8ka6ynw4wlg3w5c"; }; appimageContents = appimageTools.extractType2 { diff --git a/pkgs/applications/blockchains/lightwalletd/default.nix b/pkgs/applications/blockchains/lightwalletd/default.nix index 0c95dde0f15b..be66fee50e7d 100644 --- a/pkgs/applications/blockchains/lightwalletd/default.nix +++ b/pkgs/applications/blockchains/lightwalletd/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "lightwalletd"; - version = "0.4.7"; + version = "0.4.8"; src = fetchFromGitHub { owner = "zcash"; repo = "lightwalletd"; rev = "v${version}"; - sha256 = "0dwam3fhc4caga7kjg6cc06sz47g4ii7n3sa4j2ac4aiy21hsbjk"; + sha256 = "sha256-3cjXQXJqdmAMc+APybAKbpBhTy8Pk/QyBygSa8pGGAs="; }; vendorSha256 = null; diff --git a/pkgs/applications/blockchains/polkadot/default.nix b/pkgs/applications/blockchains/polkadot/default.nix index a64ab5249a53..9b88861d0ea6 100644 --- a/pkgs/applications/blockchains/polkadot/default.nix +++ b/pkgs/applications/blockchains/polkadot/default.nix @@ -7,16 +7,16 @@ }: rustPlatform.buildRustPackage rec { pname = "polkadot"; - version = "0.9.12"; + version = "0.9.12-1"; src = fetchFromGitHub { owner = "paritytech"; repo = "polkadot"; rev = "v${version}"; - sha256 = "1d1ppj8djqm97k18cbdvbgv9a5vhvxdgjiqair0bmxc44hwapl65"; + sha256 = "sha256-+HATcxdIDQGDIQBF08yy/eKBcS10Hp7C0nZFVsYFNwQ="; }; - cargoSha256 = "09kcacz836sm1zsi08mmf4ca5vbqc0lwwaam9p4vi0v4kd45axx9"; + cargoSha256 = "sha256-1qg4ZnSORRVI7eCVMrR7lY3tzo7KJt+dC2RBXqbKrig="; nativeBuildInputs = [ clang ]; diff --git a/pkgs/applications/blockchains/whirlpool-gui/default.nix b/pkgs/applications/blockchains/whirlpool-gui/default.nix index 62c7c3b3da47..d36715bd3066 100644 --- a/pkgs/applications/blockchains/whirlpool-gui/default.nix +++ b/pkgs/applications/blockchains/whirlpool-gui/default.nix @@ -96,7 +96,7 @@ in stdenv.mkDerivation rec { meta = with lib; { description = "Desktop GUI for Whirlpool by Samourai-Wallet"; - homepage = https://www.samouraiwallet.com/whirlpool; + homepage = "https://www.samouraiwallet.com/whirlpool"; license = licenses.unlicense; maintainers = [ maintainers.offline ]; platforms = [ "x86_64-linux" ]; diff --git a/pkgs/applications/display-managers/sddm/default.nix b/pkgs/applications/display-managers/sddm/default.nix index 029501c7787a..4676e770f1b8 100644 --- a/pkgs/applications/display-managers/sddm/default.nix +++ b/pkgs/applications/display-managers/sddm/default.nix @@ -19,6 +19,7 @@ in mkDerivation { patches = [ ./sddm-ignore-config-mtime.patch + ./sddm-default-session.patch # Load `/etc/profile` for `environment.variables` with zsh default shell. # See: https://github.com/sddm/sddm/pull/1382 (fetchpatch { diff --git a/pkgs/applications/display-managers/sddm/sddm-default-session.patch b/pkgs/applications/display-managers/sddm/sddm-default-session.patch new file mode 100644 index 000000000000..455ebbd41577 --- /dev/null +++ b/pkgs/applications/display-managers/sddm/sddm-default-session.patch @@ -0,0 +1,71 @@ +diff --git a/src/common/Configuration.h b/src/common/Configuration.h +index cf44a62..7bb9c03 100644 +--- a/src/common/Configuration.h ++++ b/src/common/Configuration.h +@@ -44,6 +44,7 @@ namespace SDDM { + "NOTE: Currently ignored if autologin is enabled.")); + Entry(InputMethod, QString, QStringLiteral("qtvirtualkeyboard"), _S("Input method module")); + Entry(Namespaces, QStringList, QStringList(), _S("Comma-separated list of Linux namespaces for user session to enter")); ++ Entry(DefaultSession, QString, QString(), _S("System-wide default session")); + // Name Entries (but it's a regular class again) + Section(Theme, + Entry(ThemeDir, QString, _S(DATA_INSTALL_DIR "/themes"), _S("Theme directory path")); +diff --git a/src/greeter/SessionModel.cpp b/src/greeter/SessionModel.cpp +index 1953c76..54fe2f2 100644 +--- a/src/greeter/SessionModel.cpp ++++ b/src/greeter/SessionModel.cpp +@@ -43,6 +43,7 @@ namespace SDDM { + beginResetModel(); + populate(Session::WaylandSession, mainConfig.Wayland.SessionDir.get()); + populate(Session::X11Session, mainConfig.X11.SessionDir.get()); ++ selectDefaultSession(); + endResetModel(); + + // refresh everytime a file is changed, added or removed +@@ -52,6 +53,7 @@ namespace SDDM { + d->sessions.clear(); + populate(Session::WaylandSession, mainConfig.Wayland.SessionDir.get()); + populate(Session::X11Session, mainConfig.X11.SessionDir.get()); ++ selectDefaultSession(); + endResetModel(); + }); + watcher->addPath(mainConfig.Wayland.SessionDir.get()); +@@ -149,11 +151,25 @@ namespace SDDM { + else + delete si; + } ++ } ++ ++ void SessionModel::selectDefaultSession() { ++ d->lastIndex = 0; ++ + // find out index of the last session + for (int i = 0; i < d->sessions.size(); ++i) { + if (d->sessions.at(i)->fileName() == stateConfig.Last.Session.get()) { + d->lastIndex = i; +- break; ++ return; ++ } ++ } ++ ++ // Otherwise, fallback to system-wide default session. ++ auto defaultSession = mainConfig.DefaultSession.get(); ++ for (int i = 0; i < d->sessions.size(); ++i) { ++ if (QFileInfo(d->sessions.at(i)->fileName()).fileName() == defaultSession) { ++ d->lastIndex = i; ++ return; + } + } + } +diff --git a/src/greeter/SessionModel.h b/src/greeter/SessionModel.h +index 2e2efa9..a93315c 100644 +--- a/src/greeter/SessionModel.h ++++ b/src/greeter/SessionModel.h +@@ -58,6 +58,7 @@ namespace SDDM { + SessionModelPrivate *d { nullptr }; + + void populate(Session::Type type, const QString &path); ++ void selectDefaultSession(); + }; + } + diff --git a/pkgs/applications/editors/aewan/default.nix b/pkgs/applications/editors/aewan/default.nix index b9d350cbd438..8472a91c596f 100644 --- a/pkgs/applications/editors/aewan/default.nix +++ b/pkgs/applications/editors/aewan/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchurl, zlib, ncurses }: +{ lib, stdenv, fetchurl, fetchpatch, zlib, ncurses }: stdenv.mkDerivation rec { pname = "aewan"; @@ -9,6 +9,17 @@ stdenv.mkDerivation rec { sha256 = "5266dec5e185e530b792522821c97dfa5f9e3892d0dca5e881d0c30ceac21817"; }; + patches = [ + # Pull patch pending upstream inclusion: + # https://sourceforge.net/p/aewan/bugs/13/ + (fetchpatch { + url = "https://sourceforge.net/p/aewan/bugs/13/attachment/aewan-cvs-ncurses-6.3.patch"; + sha256 = "0pgpk1l3d6d5y37lvvavipwnmv9gmpfdy21jkz6baxhlkgf43r4p"; + # patch is in CVS diff format, add 'a/' prefix + extraPrefix = ""; + }) + ]; + buildInputs = [ zlib ncurses ]; meta = { diff --git a/pkgs/applications/editors/bluefish/default.nix b/pkgs/applications/editors/bluefish/default.nix index 3a5436d4f32d..1919e6b6947d 100644 --- a/pkgs/applications/editors/bluefish/default.nix +++ b/pkgs/applications/editors/bluefish/default.nix @@ -1,24 +1,41 @@ -{ lib, stdenv, fetchurl, intltool, wrapGAppsHook, pkg-config , gtk, libxml2 -, enchant, gucharmap, python3, gnome +{ lib +, stdenv +, fetchurl +, intltool +, wrapGAppsHook +, pkg-config +, gtk +, libxml2 +, enchant +, gucharmap +, python3 +, gnome }: stdenv.mkDerivation rec { - name = "bluefish-2.2.12"; + pname = "bluefish"; + version = "2.2.12"; src = fetchurl { - url = "mirror://sourceforge/bluefish/${name}.tar.bz2"; + url = "mirror://sourceforge/bluefish/bluefish-${version}.tar.bz2"; sha256 = "0slyjx4b4l612505q02crk00pjg9d5wi8gm5gxvcs0f6l9dr1y8d"; }; nativeBuildInputs = [ intltool pkg-config wrapGAppsHook ]; - buildInputs = [ gnome.adwaita-icon-theme gtk libxml2 - enchant gucharmap python3 ]; + buildInputs = [ + gnome.adwaita-icon-theme + gtk + libxml2 + enchant + gucharmap + python3 + ]; meta = with lib; { description = "A powerful editor targeted towards programmers and webdevelopers"; homepage = "http://bluefish.openoffice.nl/"; license = licenses.gpl3Plus; - maintainers = [maintainers.vbgl]; + maintainers = with maintainers; [ vbgl ]; platforms = platforms.all; }; } diff --git a/pkgs/applications/editors/cudatext/default.nix b/pkgs/applications/editors/cudatext/default.nix index f3075d085c45..f840218d850c 100644 --- a/pkgs/applications/editors/cudatext/default.nix +++ b/pkgs/applications/editors/cudatext/default.nix @@ -34,7 +34,7 @@ let inherit (spec) owner rev sha256; } ) - (builtins.fromJSON (builtins.readFile ./deps.json)); + (lib.importJSON ./deps.json); in stdenv.mkDerivation rec { pname = "cudatext"; diff --git a/pkgs/applications/editors/eclipse/plugins.nix b/pkgs/applications/editors/eclipse/plugins.nix index 46a9b6c477ae..337479b16bc6 100644 --- a/pkgs/applications/editors/eclipse/plugins.nix +++ b/pkgs/applications/editors/eclipse/plugins.nix @@ -639,4 +639,99 @@ rec { }; }; + ivyde = buildEclipsePlugin rec { + name = "ivyde-${version}"; + version = "2.2.0.final-201311091524-RELEASE"; + + srcFeature = fetchurl { + url = "https://downloads.apache.org/ant/ivyde/updatesite/ivyde-${version}/features/org.apache.ivyde.feature_${version}.jar"; + sha1 = "c8fb6c4aab32db13db0bd81c1a148032667fff31"; + }; + + srcPlugin = fetchurl { + url = "https://downloads.apache.org/ant/ivyde/updatesite/ivyde-${version}/plugins/org.apache.ivyde.eclipse_${version}.jar"; + sha1 = "0c80c2e228a07f18efab1c56ea026448eda70c06"; + }; + + meta = with lib; { + homepage = "https://ant.apache.org/ivy/ivyde/index.html"; + description = "A plugin which integrates Apache Ivy's dependency management"; + license = licenses.asl20; + platforms = platforms.all; + maintainers = [ maintainers.r3dl3g ]; + }; + }; + + ivyderv = buildEclipsePlugin rec { + name = "ivyderv-${version}"; + version = "2.2.0.final-201311091524-RELEASE"; + + srcFeature = fetchurl { + url = "https://downloads.apache.org/ant/ivyde/updatesite/ivyde-${version}/features/org.apache.ivyde.eclipse.resolvevisualizer.feature_${version}.jar"; + sha1 = "fb1941eaa2c0de54259de01b0da6d5a6b4a2cab1"; + }; + + srcPlugin = fetchurl { + url = "https://downloads.apache.org/ant/ivyde/updatesite/ivyde-${version}/plugins/org.apache.ivyde.eclipse.resolvevisualizer_${version}.jar"; + sha1 = "225e0c8ccb010d622c159560638578c2fc51a67e"; + }; + + meta = with lib; { + homepage = "https://ant.apache.org/ivy/ivyde/index.html"; + description = "A graph viewer of the resolved dependencies."; + longDescription = '' + Apache IvyDE Resolve Visualizer is an optional dependency of Apache IvyDE since + it requires additional plugins to be installed (Zest). + ''; + license = licenses.asl20; + platforms = platforms.all; + maintainers = [ maintainers.r3dl3g ]; + }; + }; + + ivy = buildEclipsePlugin rec { + name = "ivy-${version}"; + version = "2.5.0.final_20191020104435"; + + srcFeature = fetchurl { + url = "https://downloads.apache.org/ant/ivyde/updatesite/ivy-${version}/features/org.apache.ivy.eclipse.ant.feature_${version}.jar"; + sha256 = "de6134171a0edf569bb9b4c3a91639d469f196e86804d218adfdd60a5d7fa133"; + }; + + srcPlugin = fetchurl { + url = "https://downloads.apache.org/ant/ivyde/updatesite/ivy-${version}/plugins/org.apache.ivy.eclipse.ant_${version}.jar"; + sha256 = "9e8ea20480cf73d0f0f3fb032d263c7536b24fd2eef71beb7d62af4e065f9ab5"; + }; + + meta = with lib; { + homepage = "https://ant.apache.org/ivy/index.html"; + description = "A popular dependency manager focusing on flexibility and simplicity"; + license = licenses.asl20; + platforms = platforms.all; + maintainers = [ maintainers.r3dl3g ]; + }; + }; + + ivyant = buildEclipsePlugin rec { + name = "ivyant-${version}"; + version = "2.5.0.final_20191020104435"; + + srcFeature = fetchurl { + url = "https://downloads.apache.org/ant/ivyde/updatesite/ivy-${version}/features/org.apache.ivy.eclipse.ant.feature_${version}.jar"; + sha256 = "de6134171a0edf569bb9b4c3a91639d469f196e86804d218adfdd60a5d7fa133"; + }; + + srcPlugin = fetchurl { + url = "https://downloads.apache.org/ant/ivyde/updatesite/ivy-${version}/plugins/org.apache.ivy.eclipse.ant_${version}.jar"; + sha256 = "9e8ea20480cf73d0f0f3fb032d263c7536b24fd2eef71beb7d62af4e065f9ab5"; + }; + + meta = with lib; { + homepage = "https://ant.apache.org/ivy/ivyde/index.html"; + description = "Ant Tasks integrated into Eclipse's Ant runtime"; + license = licenses.asl20; + platforms = platforms.all; + maintainers = [ maintainers.r3dl3g ]; + }; + }; } diff --git a/pkgs/applications/editors/elvis/default.nix b/pkgs/applications/editors/elvis/default.nix index f63598a7c5e2..eb288ff8b2a8 100644 --- a/pkgs/applications/editors/elvis/default.nix +++ b/pkgs/applications/editors/elvis/default.nix @@ -1,19 +1,22 @@ { fetchurl, fetchpatch, lib, stdenv, ncurses }: -stdenv.mkDerivation { - name = "elvis-2.2_0"; +stdenv.mkDerivation rec { + pname = "elvis"; + version = "2.2_0"; src = fetchurl { - url = "http://www.the-little-red-haired-girl.org/pub/elvis/elvis-2.2_0.tar.gz"; + url = "http://www.the-little-red-haired-girl.org/pub/elvis/elvis-${version}.tar.gz"; sha256 = "182fj9qzyq6cjq1r849gpam6nq9smwv9f9xwaq84961p56r6d14s"; }; buildInputs = [ ncurses ]; - patches = [ (fetchpatch { - url = "https://github.com/mbert/elvis/commit/076cf4ad5cc993be0c6195ec0d5d57e5ad8ac1eb.patch"; - sha256 = "0yzkc1mxjwg09mfmrk20ksa0vfnb2x83ndybwvawq4xjm1qkcahc"; - }) ]; + patches = [ + (fetchpatch { + url = "https://github.com/mbert/elvis/commit/076cf4ad5cc993be0c6195ec0d5d57e5ad8ac1eb.patch"; + sha256 = "0yzkc1mxjwg09mfmrk20ksa0vfnb2x83ndybwvawq4xjm1qkcahc"; + }) + ]; postPatch = '' substituteInPlace configure \ diff --git a/pkgs/applications/editors/emacs/elisp-packages/cedet/default.nix b/pkgs/applications/editors/emacs/elisp-packages/cedet/default.nix index 18dcef129cc2..31106654ae6c 100644 --- a/pkgs/applications/editors/emacs/elisp-packages/cedet/default.nix +++ b/pkgs/applications/editors/emacs/elisp-packages/cedet/default.nix @@ -1,10 +1,11 @@ { lib, fetchurl, stdenv, emacs, python }: stdenv.mkDerivation rec { - name = "cedet-1.1"; + pname = "cedet"; + version = "1.1"; src = fetchurl { - url = "mirror://sourceforge/cedet/${name}.tar.gz"; + url = "mirror://sourceforge/cedet/cedet-${version}.tar.gz"; sha256 = "0p2bwlpwwa019axvgj09xkxbr53j0pq23d46s4la9jfhl47nbh22"; }; diff --git a/pkgs/applications/editors/emacs/elisp-packages/elpa-generated.nix b/pkgs/applications/editors/emacs/elisp-packages/elpa-generated.nix index 13e82ba3cf15..d2b870bb82d6 100644 --- a/pkgs/applications/editors/emacs/elisp-packages/elpa-generated.nix +++ b/pkgs/applications/editors/emacs/elisp-packages/elpa-generated.nix @@ -444,6 +444,21 @@ license = lib.licenses.free; }; }) {}; + capf-autosuggest = callPackage ({ elpaBuild, emacs, fetchurl, lib }: + elpaBuild { + pname = "capf-autosuggest"; + ename = "capf-autosuggest"; + version = "0.2"; + src = fetchurl { + url = "https://elpa.gnu.org/packages/capf-autosuggest-0.2.tar"; + sha256 = "0a3bkf3c1gwv9m4rq9kvgw48y5av4arnymnm64yija55ygrnm88b"; + }; + packageRequires = [ emacs ]; + meta = { + homepage = "https://elpa.gnu.org/packages/capf-autosuggest.html"; + license = lib.licenses.free; + }; + }) {}; caps-lock = callPackage ({ elpaBuild, fetchurl, lib }: elpaBuild { pname = "caps-lock"; @@ -1101,10 +1116,10 @@ elpaBuild { pname = "ebdb"; ename = "ebdb"; - version = "0.8.6"; + version = "0.8.8"; src = fetchurl { - url = "https://elpa.gnu.org/packages/ebdb-0.8.6.tar"; - sha256 = "0amr1s1q5w4513qw31qsr8gpsfgj5b2j7qn017rmwbaf1mj0k6z0"; + url = "https://elpa.gnu.org/packages/ebdb-0.8.8.tar"; + sha256 = "035xakji5vypdpc06qp9yhg8ny7qn80h8kax6cl80p0lljplzrnn"; }; packageRequires = [ emacs seq ]; meta = { @@ -1161,10 +1176,10 @@ elpaBuild { pname = "eev"; ename = "eev"; - version = "20211024"; + version = "20211101"; src = fetchurl { - url = "https://elpa.gnu.org/packages/eev-20211024.tar"; - sha256 = "165mscb1kpgd3db92vklglnaph60rvrr8wm3hpkhrbyac100ryji"; + url = "https://elpa.gnu.org/packages/eev-20211101.tar"; + sha256 = "0sxbf116msfv6ly1dqga2sz2zpqr78nzp3v44qy7rps2887incmr"; }; packageRequires = [ emacs ]; meta = { @@ -1275,6 +1290,41 @@ license = lib.licenses.free; }; }) {}; + embark = callPackage ({ elpaBuild, emacs, fetchurl, lib }: + elpaBuild { + pname = "embark"; + ename = "embark"; + version = "0.13"; + src = fetchurl { + url = "https://elpa.gnu.org/packages/embark-0.13.tar"; + sha256 = "04x3cfikfvzr2xl1zh6kj0q31160kmh1vrzyrla3n6f8z5qch63x"; + }; + packageRequires = [ emacs ]; + meta = { + homepage = "https://elpa.gnu.org/packages/embark.html"; + license = lib.licenses.free; + }; + }) {}; + embark-consult = callPackage ({ consult + , elpaBuild + , emacs + , embark + , fetchurl + , lib }: + elpaBuild { + pname = "embark-consult"; + ename = "embark-consult"; + version = "0.2"; + src = fetchurl { + url = "https://elpa.gnu.org/packages/embark-consult-0.2.tar"; + sha256 = "0f1022yk6d88glrrawa8cl6yd5n44p8wnbfwn0f8z6j1n8wxq37z"; + }; + packageRequires = [ consult emacs embark ]; + meta = { + homepage = "https://elpa.gnu.org/packages/embark-consult.html"; + license = lib.licenses.free; + }; + }) {}; emms = callPackage ({ cl-lib ? null , elpaBuild , fetchurl @@ -1284,10 +1334,10 @@ elpaBuild { pname = "emms"; ename = "emms"; - version = "7.7"; + version = "7.8"; src = fetchurl { - url = "https://elpa.gnu.org/packages/emms-7.7.tar"; - sha256 = "0n9nx4wgjxkr8nsxcq8svg0x0qkqj7bsd2j0ihy4jzj29xmyxl0h"; + url = "https://elpa.gnu.org/packages/emms-7.8.tar"; + sha256 = "1nlb9rrdlbcqghph30r9i9m1brbdha818czbms0zhzdisxb0smi0"; }; packageRequires = [ cl-lib nadvice seq ]; meta = { @@ -1424,10 +1474,10 @@ elpaBuild { pname = "exwm"; ename = "exwm"; - version = "0.24"; + version = "0.25"; src = fetchurl { - url = "https://elpa.gnu.org/packages/exwm-0.24.tar"; - sha256 = "0lj1a3cmbpf4h6x8k6x8cdm1qb51ca6filydnvi5zcda8zpl060s"; + url = "https://elpa.gnu.org/packages/exwm-0.25.tar"; + sha256 = "0imd4v9ccvpsskmfnycz5fgabsvdjp1msg5v8rc7x0v26r3kr4x7"; }; packageRequires = [ xelb ]; meta = { @@ -1499,10 +1549,10 @@ elpaBuild { pname = "flymake-proselint"; ename = "flymake-proselint"; - version = "0.2.2"; + version = "0.2.3"; src = fetchurl { - url = "https://elpa.gnu.org/packages/flymake-proselint-0.2.2.tar"; - sha256 = "0v43d2cszrq8lzshm17x6aiqbkzwz5kj8x5sznc3nip9gaqsrfv1"; + url = "https://elpa.gnu.org/packages/flymake-proselint-0.2.3.tar"; + sha256 = "1384m52zkrlkkkyxg1zimp7dwrxhx8wbvw5ga5vg78yl6cqx9kbc"; }; packageRequires = [ emacs ]; meta = { @@ -2013,10 +2063,10 @@ elpaBuild { pname = "ivy-posframe"; ename = "ivy-posframe"; - version = "0.6.2"; + version = "0.6.3"; src = fetchurl { - url = "https://elpa.gnu.org/packages/ivy-posframe-0.6.2.tar"; - sha256 = "1x6pm0pry2j7yazhxvq1gydbymwll9yg85m8qi4sh8s0pnm0vjzk"; + url = "https://elpa.gnu.org/packages/ivy-posframe-0.6.3.tar"; + sha256 = "0b498qzaydjrhplx4d7zcrs883dlrhfiz812sv4m3pmhfwifcchh"; }; packageRequires = [ emacs ivy posframe ]; meta = { @@ -3005,10 +3055,10 @@ elpaBuild { pname = "phps-mode"; ename = "phps-mode"; - version = "0.4.7"; + version = "0.4.12"; src = fetchurl { - url = "https://elpa.gnu.org/packages/phps-mode-0.4.7.tar"; - sha256 = "0y5milfjf45bi7gj7brl2lhyla8nsj3dc1a4nfq1wx3zw8arlc50"; + url = "https://elpa.gnu.org/packages/phps-mode-0.4.12.tar"; + sha256 = "0xkzx5narbry0kbamzxv1hjgsal98cj9rp3ck25xg2ywb6nspwcw"; }; packageRequires = [ emacs ]; meta = { @@ -3050,10 +3100,10 @@ elpaBuild { pname = "posframe"; ename = "posframe"; - version = "1.0.4"; + version = "1.1.0"; src = fetchurl { - url = "https://elpa.gnu.org/packages/posframe-1.0.4.tar"; - sha256 = "0i2pw90gw9zb22gj8yyvcp3b2k1bxxhbjj0idvr5iz1vd9023bc6"; + url = "https://elpa.gnu.org/packages/posframe-1.1.0.tar"; + sha256 = "0ddm149dz71nksbpz7rwa8cax1nisf6wklv5iq4zrcbf5ghpagkg"; }; packageRequires = [ emacs ]; meta = { @@ -3651,10 +3701,10 @@ elpaBuild { pname = "sketch-mode"; ename = "sketch-mode"; - version = "1.0.3"; + version = "1.0.4"; src = fetchurl { - url = "https://elpa.gnu.org/packages/sketch-mode-1.0.3.tar"; - sha256 = "17xa8754zp07izgd3b9hywlwd1jrbzyc5y1rrhin7w6r0pyvqs51"; + url = "https://elpa.gnu.org/packages/sketch-mode-1.0.4.tar"; + sha256 = "1gv03ykr40laf52hm8p0glfsy895jghkp5a8q599zwg5wpz3zdc9"; }; packageRequires = []; meta = { @@ -4045,10 +4095,10 @@ elpaBuild { pname = "tramp"; ename = "tramp"; - version = "2.5.1.3"; + version = "2.5.1.4"; src = fetchurl { - url = "https://elpa.gnu.org/packages/tramp-2.5.1.3.tar"; - sha256 = "1qcwdavfrbw8yyfy5rbzbcfyqavqbz13jncahkqlgwbkqvmgh7y5"; + url = "https://elpa.gnu.org/packages/tramp-2.5.1.4.tar"; + sha256 = "0mk9r9hj43klah7mwldg4bw7fxcqvrbwv1gj6g90zdfsflqy7nh9"; }; packageRequires = [ emacs ]; meta = { @@ -4090,10 +4140,10 @@ elpaBuild { pname = "transient"; ename = "transient"; - version = "0.3.6"; + version = "0.3.7"; src = fetchurl { - url = "https://elpa.gnu.org/packages/transient-0.3.6.tar"; - sha256 = "11n2551kvfjrqyk0x78bz6pirnfs126cbchiv1pchqwyk8z8c9ks"; + url = "https://elpa.gnu.org/packages/transient-0.3.7.tar"; + sha256 = "0x4xjbaw98dma7232bzw53rbq9q70vms6lvvramng7vfaz0mcy2a"; }; packageRequires = [ emacs ]; meta = { @@ -4219,10 +4269,10 @@ elpaBuild { pname = "vc-backup"; ename = "vc-backup"; - version = "1.0.0"; + version = "1.1.0"; src = fetchurl { - url = "https://elpa.gnu.org/packages/vc-backup-1.0.0.tar"; - sha256 = "0vcrbb4s1rzar9q882kfcslycxvycp61923sg82i29b7yd0yrgdr"; + url = "https://elpa.gnu.org/packages/vc-backup-1.1.0.tar"; + sha256 = "1ipkymndxymbayrgr3jz27p64bkjf1nq9h4w3afpzkpqzw237ak5"; }; packageRequires = []; meta = { @@ -4337,6 +4387,26 @@ license = lib.licenses.free; }; }) {}; + vertico-posframe = callPackage ({ elpaBuild + , emacs + , fetchurl + , lib + , posframe + , vertico }: + elpaBuild { + pname = "vertico-posframe"; + ename = "vertico-posframe"; + version = "0.3.10"; + src = fetchurl { + url = "https://elpa.gnu.org/packages/vertico-posframe-0.3.10.tar"; + sha256 = "1bksipfi92adlmnk2rdw33c2g6qhw8hplcg67xhc299svqlkd0j2"; + }; + packageRequires = [ emacs posframe vertico ]; + meta = { + homepage = "https://elpa.gnu.org/packages/vertico-posframe.html"; + license = lib.licenses.free; + }; + }) {}; vigenere = callPackage ({ elpaBuild, emacs, fetchurl, lib }: elpaBuild { pname = "vigenere"; diff --git a/pkgs/applications/editors/emacs/elisp-packages/nongnu-generated.nix b/pkgs/applications/editors/emacs/elisp-packages/nongnu-generated.nix index 0cf2eae0d654..90f13e870c73 100644 --- a/pkgs/applications/editors/emacs/elisp-packages/nongnu-generated.nix +++ b/pkgs/applications/editors/emacs/elisp-packages/nongnu-generated.nix @@ -282,10 +282,10 @@ elpaBuild { pname = "flymake-kondor"; ename = "flymake-kondor"; - version = "0.1.2"; + version = "0.1.3"; src = fetchurl { - url = "https://elpa.nongnu.org/nongnu/flymake-kondor-0.1.2.tar"; - sha256 = "17mmn9mj4zl5f7byairkgxz6s2mrq73q3219s73c0b2g0g846krn"; + url = "https://elpa.nongnu.org/nongnu/flymake-kondor-0.1.3.tar"; + sha256 = "07k8b3wayp1h4hir98zs5srjjsnh6w0h9pzn4vnq9s2jr355509n"; }; packageRequires = [ emacs ]; meta = { @@ -387,10 +387,10 @@ elpaBuild { pname = "geiser-guile"; ename = "geiser-guile"; - version = "0.17"; + version = "0.18"; src = fetchurl { - url = "https://elpa.nongnu.org/nongnu/geiser-guile-0.17.tar"; - sha256 = "0g4982rfxjp08qi6nxz73lsbdwf388fx511394yw4s7ml6v1m4kd"; + url = "https://elpa.nongnu.org/nongnu/geiser-guile-0.18.tar"; + sha256 = "1jnqra7gysscn0gb1ap56rbjlrnhsmma7q4yfiy3zxsz8m69xhqf"; }; packageRequires = [ emacs geiser ]; meta = { @@ -975,10 +975,10 @@ elpaBuild { pname = "rust-mode"; ename = "rust-mode"; - version = "1.0.0"; + version = "1.0.1"; src = fetchurl { - url = "https://elpa.nongnu.org/nongnu/rust-mode-1.0.0.tar"; - sha256 = "0ch3hf954iy5hh5zyjjg68szdk5icppmi8nbap27wfwgvhvyfa67"; + url = "https://elpa.nongnu.org/nongnu/rust-mode-1.0.1.tar"; + sha256 = "1rybjnaycvjgqp8g8lkjzgvnwd4565cbx88qlnxfrlqd5161r1k3"; }; packageRequires = [ emacs ]; meta = { @@ -1099,10 +1099,10 @@ elpaBuild { pname = "swift-mode"; ename = "swift-mode"; - version = "8.4.1"; + version = "8.4.2"; src = fetchurl { - url = "https://elpa.nongnu.org/nongnu/swift-mode-8.4.1.tar"; - sha256 = "0f87bjgva0iv818bh2dqvc1svrwh5zm134jpxcmvmzr1yqazx4qp"; + url = "https://elpa.nongnu.org/nongnu/swift-mode-8.4.2.tar"; + sha256 = "0rkri1414f2w2bw76dwnmylcdca6x9bkdvlq1aznz76ac259klji"; }; packageRequires = [ emacs seq ]; meta = { diff --git a/pkgs/applications/editors/emacs/elisp-packages/recipes-archive-melpa.json b/pkgs/applications/editors/emacs/elisp-packages/recipes-archive-melpa.json index 5b0ef0fa8e48..118065eb31ca 100644 --- a/pkgs/applications/editors/emacs/elisp-packages/recipes-archive-melpa.json +++ b/pkgs/applications/editors/emacs/elisp-packages/recipes-archive-melpa.json @@ -213,11 +213,11 @@ "repo": "ymarco/auto-activating-snippets", "unstable": { "version": [ - 20211002, - 1952 + 20211103, + 1551 ], - "commit": "ea9d91be117056f1e49479c94d034e8c6f8df5a0", - "sha256": "0z0ilyq0h1ic62gk3gwfiagp8hv4vl2z663fhxwl9g5r94rc3pxi" + "commit": "b868ef7065039899628a2846dd1274233e07a310", + "sha256": "1a8rr7ni9x4n21lysfhczf0j0nqi9xd17s39lfpxmpp10s36mrxf" }, "stable": { "version": [ @@ -1148,8 +1148,8 @@ "auto-complete", "rtags" ], - "commit": "cdff9b47fc17710aad7815652490c3c620b5e792", - "sha256": "0mrb2dayd8ls56cjlp63315ai0ds09d4qsajgv5kks2gqqxbkrjb" + "commit": "db39790fda5c2443bc790b8971ac140914f7e9c2", + "sha256": "05cigdvlq5lfahr9a1z8rvlw2s99j4pha2in59pshz9ph8cqgq10" }, "stable": { "version": [ @@ -1947,6 +1947,26 @@ "sha256": "1p918y24vcn2pdliaymd210xp9fvhd4a1srqbv2lfiqrh59yjidx" } }, + { + "ename": "agda-editor-tactics", + "commit": "1806c594f0ae0d7eb8be7e4baf4bf66af32c3d46", + "sha256": "11lfpa1hdbrnbrrhpqmi3lzx28wbfnw4j29rywwcjlcb6a0ax50v", + "fetcher": "github", + "repo": "alhassy/next-700-module-systems", + "unstable": { + "version": [ + 20211024, + 2357 + ], + "deps": [ + "dash", + "org", + "s" + ], + "commit": "c401c0c1ec0ad38bb5ee1636504e0e531b9e34b9", + "sha256": "0y5dp3i97w96dy5p5yk4gxs4db9n260sn1q2vp1j6afi30mn2mb9" + } + }, { "ename": "agda2-mode", "commit": "714e0fe062981d27e3f1d48b2fd759d60bbb4d8c", @@ -1962,8 +1982,8 @@ "annotation", "eri" ], - "commit": "bea11a04df5f82b2b8782bcad5bf2af2a6b88b65", - "sha256": "043pl1cdyy8yfmw50kqwf7xn0alcm98zzms962v7jdgbhbq07882" + "commit": "475d9add939bf86936a1d5b41c3260f0000bd3c8", + "sha256": "0f7849s67gzzrnkb57hm2p6hbkrd50s02m9l5xfqg286dinhqp0v" }, "stable": { "version": [ @@ -2344,8 +2364,8 @@ "deps": [ "flycheck" ], - "commit": "135be1a851a1110dffe8bb349183b73a49a1f090", - "sha256": "09j59s5agyvngk5z75dl129gdzlq2kn11qlgc9798fy1gx11cahw" + "commit": "1bcc7c68abcd6471604c9b7fe7f85b0878bbd435", + "sha256": "10kpdra8m015xsh7w25v18zd62csayji0p5jqgif20bw6g8g20a7" }, "stable": { "version": [ @@ -2968,6 +2988,21 @@ "sha256": "11fgiy029sqz7nvdm7dcal95lacryz9zql0x5h05z48nrrcl4bib" } }, + { + "ename": "ancient-one-dark-theme", + "commit": "df6184184228dfdb0b0e4a770c30c67d05a9bf94", + "sha256": "064yiab7ll7nwls7p8cyh8glmzr4msmdhl4vvvy45ll5diyfbkfa", + "fetcher": "github", + "repo": "holodata/ancient-one-dark-emacs", + "unstable": { + "version": [ + 20211030, + 1358 + ], + "commit": "2a4319971f42c754dd43806b66c13317741d6939", + "sha256": "1965wfdaqr7p3b0yc287xdb367xib491ljp7yazn3dxxy7ayd25h" + } + }, { "ename": "android-env", "commit": "570ad0e94736d9fd16f3909bcfa928a9153ea703", @@ -3246,8 +3281,8 @@ 20200914, 644 ], - "commit": "bea11a04df5f82b2b8782bcad5bf2af2a6b88b65", - "sha256": "043pl1cdyy8yfmw50kqwf7xn0alcm98zzms962v7jdgbhbq07882" + "commit": 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+ 2 ], - "commit": "167060303b6d9ffb56b2785cec0f7e363f0876c6", - "sha256": "0zaw4zjxsrjfm4rajqlh4wff158crbxyjpajbmh4yckd3gnz1swr" + "commit": "28a033cc7de056d1a74857606397bb294ebe27ac", + "sha256": "18ir7q31l9jqshx3hixiaq9nvlfasxqrmr0a57q852xb0ad31gcj" } }, { @@ -12689,11 +12731,11 @@ "repo": "tumashu/cnfonts", "unstable": { "version": [ - 20200824, - 240 + 20211102, + 2232 ], - "commit": "b967605d571d827c1cb041c174fb363985758729", - "sha256": "1h4c6czj7zr1p8b0233rxmczkaf7hh72869lijsvkvx9xmq9pk8w" + "commit": "46c9034f28cc559f8c93650baa1a64a42b06c535", + "sha256": "1dy6n1cdn05bdr4f1wk72gav5mnfbm23i6cp2vh6nd1nq5kkkchp" }, "stable": { "version": [ @@ -13290,11 +13332,11 @@ "repo": "matthewbauer/comint-hyperlink", "unstable": { "version": [ - 20191104, - 2224 + 20211026, + 100 ], - "commit": "a7878825788ff6b9d6b8a5adf0214a028bad895e", - "sha256": "19fww5aciqx4h67hpmzf564n0ygzg69v1sk1qjyhbs27pq5zrjmq" + "commit": "905f2db1f95950899301b9f71faed9e9362cf5dc", + "sha256": 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'https://github.com/doublep/eldev/archive/4a44c72a8cca50677315b1af7dbcae471421ef3f.tar.gz': Couldn't resolve host name (6); retrying in 517 ms\nwarning: unable to download 'https://github.com/doublep/eldev/archive/4a44c72a8cca50677315b1af7dbcae471421ef3f.tar.gz': Couldn't resolve host name (6); retrying in 1178 ms\nwarning: unable to download 'https://github.com/doublep/eldev/archive/4a44c72a8cca50677315b1af7dbcae471421ef3f.tar.gz': HTTP error 302 (curl error: Couldn't resolve host name); retrying in 2285 ms\nerror: unable to download 'https://github.com/doublep/eldev/archive/4a44c72a8cca50677315b1af7dbcae471421ef3f.tar.gz': HTTP error 302 (curl error: Couldn't resolve host name)\n" + ] }, "stable": { "version": [ @@ -25688,11 +25733,11 @@ "repo": "it-is-wednesday/eldoc-toml", "unstable": { "version": [ - 20211024, - 2247 + 20211026, + 1122 ], - "commit": "60f1de70942e163034ef093c61f50f29820c3c04", - "sha256": "1qkcin1b6b41m69gmhj5q4g2lnzfh2w237f87s5zfpkid0mzw7k9" + "commit": 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+ 2324 ], - "commit": "c088fe627f12597726dfc2062454e2e7bd99798a", - "sha256": "0bhvhhqs55nh1qb212zmmxw76l22xd830pvw0n9wihv02yrg7kim" + "commit": "cb3b873063304ce5e1a5fd386c5f8c933964cd55", + "sha256": "19ly819cg5nnjcsr3aqk21hriyv2v8v64xfmyvk1j5p668y6mqkm" } }, { @@ -110587,8 +110766,8 @@ "org", "transient" ], - "commit": "00b4fd5cae7fe27085995dbb178828fb765c7edc", - "sha256": "1ya91159i58x4mccpnx429kq2k0xc04alikbly549qm8yw1y1hxg" + "commit": "0cb9c2fef6e611b4389f7df7fcccc17744053e9b", + "sha256": "1fv4bn6c04kv39jv25r09pvxc5hz5gwwbj16fhxs5930rf77ikqb" }, "stable": { "version": [ @@ -110678,16 +110857,16 @@ "repo": "wanderlust/wanderlust", "unstable": { "version": [ - 20211008, - 1118 + 20211028, + 1330 ], "deps": [ "apel", "flim", "semi" ], - "commit": "92ded1534ce7143f379b92a4029db275f3e22ee8", - "sha256": "0ai48j19dpyny1mmf81wjwmr5i5i5rnaj4d5n0hfchs4dcng0xrq" + "commit": "475514f22c0869d7b84cdf0b957f9ae75a45605b", + "sha256": "050dglv2l5z7pgrkzpmplzjm5mx3b4yg4zaqp2ghd9ddd19kn3y8" } }, { @@ -111620,11 +111799,11 @@ "repo": "lassik/emacs-whois", "unstable": { "version": [ - 20210429, - 805 + 20211104, + 812 ], - "commit": "6ce65ec5c992b1e1cb538610f1c3708e9d467c39", - "sha256": "0cz5c0zy4lz0534nfr2xf7p0d09ppcfdmry4335gx19vz47fj60n" + "commit": "f22244202fdac5064d5eff95c6f35ae887b01142", + "sha256": "0zv80aarrqlgnp7icvmm9yxlpc9qpdzn73lfrvrpry1rmv301wfp" }, "stable": { "version": [ @@ -112193,11 +112372,11 @@ "repo": "magit/with-editor", "unstable": { "version": [ - 20211015, - 1917 + 20211028, + 2105 ], - "commit": "8d52f933e50624c7bca3880f57297ac17ba4ac2d", - "sha256": "0k0k7mbsizsbgyjb92qj9hp5f2jbwbkzmfbxjhbmniw87q1flmmp" + "commit": "521f75e3f37c7fe204bddb8a29ce862cae8f59bd", + "sha256": "0my9zbrzgn4h6wxl172iw6mn2dvcn3r85bdcl3pyv0hc5n7lkzxz" }, "stable": { "version": [ @@ -113033,8 +113212,8 @@ "repo": "dandavison/xenops", "unstable": { "version": [ - 20210630, - 740 + 20211102, + 1607 ], "deps": [ "aio", @@ -113044,8 +113223,8 @@ "f", "s" ], - "commit": "95b0b37cf5bb6474f054056b0dad9402c700c5b7", - "sha256": "09xiabicada3ziyinlc9fczcdy2nr01fn3fqlq1vpjzb5882k63l" + "commit": "61f4fe7b5cc2549ea7363635307279becac53ea7", + "sha256": "188p1lk7d6gbnshikb7qf646ljpcrsdssr0k9jd1vgga8iz22k0d" } }, { @@ -114261,11 +114440,11 @@ "repo": "ryuslash/yoshi-theme", "unstable": { "version": [ - 20210713, - 455 + 20211031, + 456 ], - "commit": "06a6bcfc58d1f1cd8815c674c9fcbbf193bba0a9", - "sha256": "0mp68h924hfj86rya0kvk16w82lvllmiryz8ry70ngcfmwdh930v" + "commit": "787bb0a13c6e1b28e904e1b7f18564d5e97c9c93", + "sha256": "1yf6nnvzx7pv7qfx1wln9ksanapnf5b0chyrdhzy9wyjfx00hclz" }, "stable": { "version": [ diff --git a/pkgs/applications/editors/emacs/elisp-packages/session-management-for-emacs/default.nix b/pkgs/applications/editors/emacs/elisp-packages/session-management-for-emacs/default.nix index 61749a89fde4..71f9981f461a 100644 --- a/pkgs/applications/editors/emacs/elisp-packages/session-management-for-emacs/default.nix +++ b/pkgs/applications/editors/emacs/elisp-packages/session-management-for-emacs/default.nix @@ -1,27 +1,29 @@ -{stdenv, fetchurl, emacs}: +{ stdenv, fetchurl, emacs, lib }: -stdenv.mkDerivation { - name = "session-management-for-emacs-2.2a"; +stdenv.mkDerivation rec { + pname = "session-management-for-emacs"; + version = "2.2a"; src = fetchurl { - url = "mirror://sourceforge/emacs-session/session-2.2a.tar.gz"; + url = "mirror://sourceforge/emacs-session/session-${version}.tar.gz"; sha256 = "37dfba7420b5164eab90dafa9e8bf9a2c8f76505fe2fefa14a64e81fa76d0144"; }; - buildInputs = [emacs]; + buildInputs = [ emacs ]; installPhase = '' mkdir -p "$out/share/emacs/site-lisp" cp lisp/*.el "$out/share/emacs/site-lisp/" ''; - meta = { + meta = with lib; { /* installation: add to your ~/.emacs - (require 'session) - (add-hook 'after-init-hook 'session-initialize) + (require 'session) + (add-hook 'after-init-hook 'session-initialize) */ description = "Small session management for emacs"; homepage = "http://emacs-session.sourceforge.net/"; - license = "GPL"; + license = licenses.gpl2; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/applications/editors/emacs/elisp-packages/sunrise-commander/default.nix b/pkgs/applications/editors/emacs/elisp-packages/sunrise-commander/default.nix index 1e1fffe9adbc..eaa7d8b57793 100644 --- a/pkgs/applications/editors/emacs/elisp-packages/sunrise-commander/default.nix +++ b/pkgs/applications/editors/emacs/elisp-packages/sunrise-commander/default.nix @@ -6,13 +6,13 @@ trivialBuild rec { pname = "sunrise-commander"; - version = "0.pre+unstable=2021-07-22"; + version = "0.pre+unstable=2021-09-27"; src = fetchFromGitHub { owner = pname; repo = pname; - rev = "7662f635c372224e2356d745185db1e718fb7ee4"; - hash = "sha256-NYUqJ2rDidVchX2B0+ApNbQeZFxxCnKRYXb6Ia+NzLI="; + rev = "16e6df7e86c7a383fb4400fae94af32baf9cb24e"; + hash = "sha256-D36qiRi5OTZrBtJ/bD/javAWizZ8NLlC/YP4rdLCSsw="; }; buildInputs = [ diff --git a/pkgs/applications/editors/fte/default.nix b/pkgs/applications/editors/fte/default.nix index 4f78267dbe5d..05841bb1bac2 100644 --- a/pkgs/applications/editors/fte/default.nix +++ b/pkgs/applications/editors/fte/default.nix @@ -1,7 +1,8 @@ { lib, stdenv, fetchurl, unzip, perl, libX11, libXpm, gpm, ncurses, slang }: stdenv.mkDerivation rec { - name = "fte-0.50.02"; + pname = "fte"; + version = "0.50.02"; nativeBuildInputs = [ unzip ]; buildInputs = [ perl libX11 libXpm gpm ncurses slang ]; diff --git a/pkgs/applications/editors/hexcurse/default.nix b/pkgs/applications/editors/hexcurse/default.nix index a1b90b83d589..9adce387f407 100644 --- a/pkgs/applications/editors/hexcurse/default.nix +++ b/pkgs/applications/editors/hexcurse/default.nix @@ -23,6 +23,22 @@ stdenv.mkDerivation rec { url = "https://github.com/LonnyGomes/hexcurse/commit/716b5d58ac859cc240b8ccb9cbd79ace3e0593c1.patch"; sha256 = "0v6gbp6pjpmnzswlf6d97aywiy015g3kcmfrrkspsbb7lh1y3nix"; }) + + # Fix pending upstream inclusion for gcc10 -fno-common compatibility: + # https://github.com/LonnyGomes/hexcurse/pull/28 + (fetchpatch { + name = "fno-common.patch"; + url = "https://github.com/LonnyGomes/hexcurse/commit/9cf7c9dcd012656df949d06f2986b57db3a72bdc.patch"; + sha256 = "1awsyxys4pd3gkkgyckgjg3njgqy07223kcmnpfdkidh2xb0s360"; + }) + + # Fix pending upstream inclusion for ncurses-6.3 support: + # https://github.com/LonnyGomes/hexcurse/pull/40 + (fetchpatch { + name = "ncurses-6.3.patch"; + url = "https://github.com/LonnyGomes/hexcurse/commit/cb70d4a93a46102f488f471fad31a7cfc9fec025.patch"; + sha256 = "19674zhhp7gc097kl4bxvi0gblq6jzjy8cw8961svbq5y3hv1v5y"; + }) ]; meta = with lib; { diff --git a/pkgs/applications/editors/jetbrains/common.nix b/pkgs/applications/editors/jetbrains/common.nix index 3992fc5c2ec4..4d8835c29c5f 100644 --- a/pkgs/applications/editors/jetbrains/common.nix +++ b/pkgs/applications/editors/jetbrains/common.nix @@ -17,7 +17,7 @@ let loName = toLower product; + ".vmoptions"; in -with stdenv; lib.makeOverridable mkDerivation rec { +with stdenv; lib.makeOverridable mkDerivation (rec { inherit name src; meta = args.meta // { inherit mainProgram; }; @@ -94,4 +94,4 @@ with stdenv; lib.makeOverridable mkDerivation rec { } // lib.optionalAttrs (!(meta.license.free or true)) { preferLocalBuild = true; -} +}) diff --git a/pkgs/applications/editors/jetbrains/default.nix b/pkgs/applications/editors/jetbrains/default.nix index 05ee956e4679..4c65ddcc8f67 100644 --- a/pkgs/applications/editors/jetbrains/default.nix +++ b/pkgs/applications/editors/jetbrains/default.nix @@ -268,12 +268,12 @@ in goland = buildGoland rec { name = "goland-${version}"; - version = "2021.2.3"; /* updated by script */ + version = "2021.2.4"; /* updated by script */ description = "Up and Coming Go IDE"; license = lib.licenses.unfree; src = fetchurl { url = "https://download.jetbrains.com/go/${name}.tar.gz"; - sha256 = "1n0yrk05xv4pard82b6z349ksiw8k75s9525pnpa2ny1ay1klhdg"; /* updated by script */ + sha256 = "03x7yz8jz5r4pblm7cvph39zppa33lalvkpzmgvr3wjq0chqmh65"; /* updated by script */ }; wmClass = "jetbrains-goland"; update-channel = "GoLand RELEASE"; @@ -307,13 +307,13 @@ in mps = buildMps rec { name = "mps-${version}"; - version = "2021.2.1"; /* updated by script */ + version = "2021.2.2"; /* updated by script */ versionMajorMinor = "2021.2"; /* updated by script */ description = "Create your own domain-specific language"; license = lib.licenses.asl20; src = fetchurl { url = "https://download.jetbrains.com/mps/${versionMajorMinor}/MPS-${version}.tar.gz"; - sha256 = "1yawjc5xwga1mmlsl3068ml532941mq08i9ji3dhj1nwdkyav2jz"; /* updated by script */ + sha256 = "011prnpab72kfgkwq0ms27qqnjamh33h023gb01fxvqwwzcmp6sk"; /* updated by script */ }; wmClass = "jetbrains-mps"; update-channel = "MPS RELEASE"; @@ -334,12 +334,12 @@ in pycharm-community = buildPycharm rec { name = "pycharm-community-${version}"; - version = "2021.2.2"; /* updated by script */ + version = "2021.2.3"; /* updated by script */ description = "PyCharm Community Edition"; license = lib.licenses.asl20; src = fetchurl { url = "https://download.jetbrains.com/python/${name}.tar.gz"; - sha256 = "0s9kk3n5ac6lvqi2yw9gvvm45865jchiwyrs8pq2dgdkgaligrjv"; /* updated by script */ + sha256 = "0m98qhkgwnmqkay8sclfyig2xcqvpva74l2kdira3r5sbszmxvcr"; /* updated by script */ }; wmClass = "jetbrains-pycharm-ce"; update-channel = "PyCharm RELEASE"; @@ -347,12 +347,12 @@ in pycharm-professional = buildPycharm rec { name = "pycharm-professional-${version}"; - version = "2021.2.2"; /* updated by script */ + version = "2021.2.3"; /* updated by script */ description = "PyCharm Professional Edition"; license = lib.licenses.unfree; src = fetchurl { url = "https://download.jetbrains.com/python/${name}.tar.gz"; - sha256 = "0mgmmf926n3ipr8fxn6f9hsa5vkil8yrw5qlixi8nwnx7chmkp56"; /* updated by script */ + sha256 = "0zp72ag9jqhq0sv4x5n43d6g9y2yzkxa4pkflc7gd5rpg555cqr7"; /* updated by script */ }; wmClass = "jetbrains-pycharm"; update-channel = "PyCharm RELEASE"; @@ -386,12 +386,12 @@ in webstorm = buildWebStorm rec { name = "webstorm-${version}"; - version = "2021.2.2"; /* updated by script */ + version = "2021.2.3"; /* updated by script */ description = "Professional IDE for Web and JavaScript development"; license = lib.licenses.unfree; src = fetchurl { url = "https://download.jetbrains.com/webstorm/WebStorm-${version}.tar.gz"; - sha256 = "1a3vlqza9nbc4a2qxrzdckmq003zx1db9dy7wx462amc8sbh6v92"; /* updated by script */ + sha256 = "0d79x1jz4ymd6cc1n4s3y3n8lb6gw4g0yj6d4qzjlr5c9snx3zdf"; /* updated by script */ }; wmClass = "jetbrains-webstorm"; update-channel = "WebStorm RELEASE"; diff --git a/pkgs/applications/editors/kakoune/default.nix b/pkgs/applications/editors/kakoune/default.nix index 1e7d38086b79..e8c2760973a6 100644 --- a/pkgs/applications/editors/kakoune/default.nix +++ b/pkgs/applications/editors/kakoune/default.nix @@ -4,12 +4,12 @@ with lib; stdenv.mkDerivation rec { pname = "kakoune-unwrapped"; - version = "2021.10.28"; + version = "2021.11.08"; src = fetchFromGitHub { repo = "kakoune"; owner = "mawww"; rev = "v${version}"; - sha256 = "sha256-ph0063EHyFa7arXvCVD+tGhs8ShyCDYkFVd1w6MZ5Z8="; + sha256 = "sha256-lMGMt0H1G8EN/7zSVSvU1yU4BYPnSF1vWmozLdrRTQk="; }; makeFlags = [ "debug=no" "PREFIX=${placeholder "out"}" ]; diff --git a/pkgs/applications/editors/kakoune/plugins/aliases.nix b/pkgs/applications/editors/kakoune/plugins/aliases.nix index 5ff2a03441de..cf9a65c43f2b 100644 --- a/pkgs/applications/editors/kakoune/plugins/aliases.nix +++ b/pkgs/applications/editors/kakoune/plugins/aliases.nix @@ -33,7 +33,7 @@ let deprecations = lib.mapAttrs (old: info: throw "${old} was renamed to ${info.new} on ${info.date}. Please update to ${info.new}." - ) (builtins.fromJSON (builtins.readFile ./deprecated.json)); + ) (lib.importJSON ./deprecated.json); in mapAliases ({ diff --git a/pkgs/applications/editors/kakoune/plugins/update-shell.nix b/pkgs/applications/editors/kakoune/plugins/update-shell.nix new file mode 100644 index 000000000000..ca83f09c7154 --- /dev/null +++ b/pkgs/applications/editors/kakoune/plugins/update-shell.nix @@ -0,0 +1,15 @@ +{ pkgs ? import ../../../../.. { } }: + +with pkgs; +let + pyEnv = python3.withPackages (ps: [ ps.GitPython ]); +in + +mkShell { + packages = [ + bash + pyEnv + nix + nix-prefetch-scripts + ]; +} diff --git a/pkgs/applications/editors/kakoune/plugins/update.py b/pkgs/applications/editors/kakoune/plugins/update.py index 40a28d9afe2c..9f5f64f9e5b3 100755 --- a/pkgs/applications/editors/kakoune/plugins/update.py +++ b/pkgs/applications/editors/kakoune/plugins/update.py @@ -1,5 +1,5 @@ #!/usr/bin/env nix-shell -#!nix-shell -p nix-prefetch-git -p python3 -p python3Packages.GitPython nix -i python3 +#!nix-shell update-shell.nix -i python3 # format: # $ nix run nixpkgs.python3Packages.black -c black update.py diff --git a/pkgs/applications/editors/kile/default.nix b/pkgs/applications/editors/kile/default.nix index 6819c4337f4c..686113452eb8 100644 --- a/pkgs/applications/editors/kile/default.nix +++ b/pkgs/applications/editors/kile/default.nix @@ -22,10 +22,11 @@ }: mkDerivation rec { - name = "kile-2.9.93"; + pname = "kile"; + version = "2.9.93"; src = fetchurl { - url = "mirror://sourceforge/kile/${name}.tar.bz2"; + url = "mirror://sourceforge/kile/kile-${version}.tar.bz2"; sha256 = "BEmSEv/LJPs6aCkUmnyuTGrV15WYXwgIANbfcviMXfA="; }; diff --git a/pkgs/applications/editors/leo-editor/default.nix b/pkgs/applications/editors/leo-editor/default.nix index cf4a752b1bd0..ee22c591ad77 100644 --- a/pkgs/applications/editors/leo-editor/default.nix +++ b/pkgs/applications/editors/leo-editor/default.nix @@ -2,13 +2,13 @@ mkDerivation rec { pname = "leo-editor"; - version = "6.2.1"; + version = "6.5"; src = fetchFromGitHub { owner = "leo-editor"; repo = "leo-editor"; rev = version; - sha256 = "1s9jvxwzsl32clp78g92nq9p2byf08libr5widl1jnkv1cpkbvh9"; + sha256 = "sha256-f237oXhnu6OtGVhIFDswFwfjcLgYWvLNRtVW4SChFzU="; }; dontBuild = true; diff --git a/pkgs/applications/editors/neovim/default.nix b/pkgs/applications/editors/neovim/default.nix index 8655235f2927..6a55e7c8e396 100644 --- a/pkgs/applications/editors/neovim/default.nix +++ b/pkgs/applications/editors/neovim/default.nix @@ -1,6 +1,6 @@ { lib, stdenv, fetchFromGitHub, cmake, gettext, msgpack, libtermkey, libiconv , libuv, lua, ncurses, pkg-config -, unibilium, xsel, gperf +, unibilium, gperf , libvterm-neovim , tree-sitter , glibcLocales ? null, procps ? null @@ -113,10 +113,6 @@ in substituteInPlace src/nvim/CMakeLists.txt --replace " util" "" ''; - postInstall = lib.optionalString stdenv.isLinux '' - sed -i -e "s|'xsel|'${xsel}/bin/xsel|g" $out/share/nvim/runtime/autoload/provider/clipboard.vim - ''; - # export PATH=$PWD/build/bin:${PATH} shellHook='' export VIMRUNTIME=$PWD/runtime diff --git a/pkgs/applications/editors/oni2/common.nix b/pkgs/applications/editors/oni2/common.nix new file mode 100644 index 000000000000..e049c3ae6416 --- /dev/null +++ b/pkgs/applications/editors/oni2/common.nix @@ -0,0 +1,252 @@ +{ lib, stdenv, nodePackages +# Fetch dependencies +, fetchFromGitHub, gitMinimal, curlMinimal, cacert, yarn, unzip, xorg, nodejs +, ripgrep, fontconfig, libGL, libGLU, ncurses, acl, harfbuzz, libjpeg, expat +, icu58, libpng +# Build +, jq, perl, makeWrapper, bash, which, nasm, python2, gn, ninja, cmake, clang +, fixup_yarn_lock, callPackage }: + +{ variant, version, rev, sha256, fetchDepsSha256, license }: + +let + source = fetchFromGitHub { + repo = variant; + owner = "onivim"; + inherit rev sha256; + }; + + fetchDeps = stdenv.mkDerivation { + name = "oni2-fetch-deps"; + + unpackPhase = '' + cp ${source}/{release,package}.json ./ + cp -r ${source}/{release.esy.lock,node,extensions} ./ + chmod -R +w node extensions + ''; + + nativeBuildInputs = [ + jq + nodePackages.esy + gitMinimal + curlMinimal + cacert + python2 + perl + unzip + yarn + ]; + + buildPhase = '' + export ESY__PREFIX=$NIX_BUILD_TOP/esy + export ESY__GLOBAL_PATH=PATH + + esy '@release' install + + ln -s $NIX_BUILD_TOP/esy/source/i/ $NIX_BUILD_TOP/source + + cd $NIX_BUILD_TOP/source + cd $(ls | grep "^esy_skia") + + # Prefetch esy_skia pinned dependencies + # angle2, dng_sdk, piex and sfntly are unique and need to be fetched + # zlib and webp used here seem to be outdated, so it's impossible to link esy_skia against upstream zlib and webp + cat DEPS | grep -E '{|}|angle2|dng_sdk|piex|sfntly|zlib|webp' > DEPS-upd + mv DEPS{-upd,} + python tools/git-sync-deps + # Patch esy_skia builder to use nixpkgs ninja, gn tools and icu, expat and libpng libraries. + cd esy + patch build.sh ${./esy_skia_use_nixpkgs.patch} + + cd $NIX_BUILD_TOP/source + cd $(ls | grep '^revery' | grep -v '__s__') + jq '.esy.build |= "bash -c \"\(.)\""' package.json > package-upd.json + mv package{-upd,}.json + + # Delete esy_cmake and ninja dependencies (they are brought from Nixpkgs) + # Removing them from release.esy.lock is hard because it reports corruption + for d in "revery__s__esy_cmake" "ninja"; do + cd $NIX_BUILD_TOP/source + cd $(ls | grep $d) + rm -rf * + done + + rm -rf $(find $NIX_BUILD_TOP/esy -name .git) + ''; + + installPhase = '' + mkdir $out + cp -r $NIX_BUILD_TOP/esy $out/ + ''; + + dontPatchShebangs = true; + + impureEnvVars = lib.fetchers.proxyImpureEnvVars; + + outputHashMode = "recursive"; + outputHashAlgo = "sha256"; + outputHash = fetchDepsSha256; + }; +in stdenv.mkDerivation (rec { + pname = "oni2"; + inherit version; + + nativeBuildInputs = [ + clang + makeWrapper + nodePackages.esy + bash + perl + which + nasm + python2 + gn + ninja + cmake + jq + yarn + fixup_yarn_lock + ]; + + buildInputs = [ + nodejs + ripgrep + fontconfig + libGL + libGLU + ncurses + acl + harfbuzz + libjpeg + expat + icu58 + libpng + ] ++ (with xorg; [ + libX11 + libXext + libXi + libXxf86vm + libXrandr + libXinerama + libXcursor + libICE + libSM + libXt + libxkbfile + ]); + + unpackPhase = '' + cp -r ${source}/* ./ + cp -r ${fetchDeps}/esy ./ + + chmod -R +w esy node/ extensions/ + chmod +w assets/configuration + ''; + + hardeningDisable = [ "fortify" ]; + + node = (callPackage ./node.nix { }).offline_cache; + extensions = (callPackage ./extensions.nix { }).offline_cache; + + configurePhase = '' + runHook preConfigure + + # Esy by default erases the entire environment, so the builder makes a wrapper over bash to automatically re-export it + mkdir wrapped-bash + echo "#!${bash}/bin/bash" > wrapped-bash/bash + export | sed 's/PATH="/PATH="$PATH:/' >> wrapped-bash/bash + echo "exec ${bash}/bin/bash \"\$@\"" >> wrapped-bash/bash + chmod +x wrapped-bash/bash + + # Use custom builder for Oni2 to provide necessary environment to it + echo 'declare -x NIX_LDFLAGS="$NIX_LDFLAGS -lXext -lharfbuzz -ljpeg -lpthread -lpng -lexpat"' > build.sh + echo $(jq -r '.esy.build' package.json) >> build.sh + jq '.esy.build |= "bash build.sh"' package.json > package-upd.json + mv package{-upd,}.json + + export PATH="$NIX_BUILD_TOP/wrapped-bash:$PATH" + patchShebangs $NIX_BUILD_TOP/esy/source + + echo "" > assets/configuration/setup.json # it will be set at installation phase. + + substituteInPlace src/gen_buildinfo/generator.re --replace "git rev-parse --short HEAD" "echo '${version}'" + + runHook postConfigure + ''; + + buildPhase = '' + runHook preBuild + + # Required by yarn + export HOME=$(mktemp -d) + + # Install pinned yarn packages + yarnInstall() { + # Remove `resolutions` section from package.json + jq 'del(.resolutions)' $3/package.json > $3/package-upd.json + cp $3/package{-upd,}.json + + # Copy custom yarn.lock to match updated package.json, do fixup + cp $2 $3/yarn.lock + fixup_yarn_lock $3/yarn.lock + + # Make yarn install prefetched dependencies + yarn config --offline set yarn-offline-mirror $1 + # Set explicit node install directory for node-gyp. + npm_config_nodedir=${nodejs} yarn install --frozen-lockfile --offline --no-progress --non-interactive --cwd $3 + } + yarnInstall ${node} ${./node.lock} node + yarnInstall ${extensions} ${./extensions.lock} extensions + + export ESY__PREFIX="$NIX_BUILD_TOP/esy" + esy '@release' install # should do nothing + + export ESY__GLOBAL_PATH=PATH + # Create link to bin directory, currently empty + esy '@release' sh -c "ln -s \$cur__bin result" + # Finish building Oni2 + esy '@release' x Oni2 --help + + runHook postBuild + ''; + + installPhase = '' + runHook preInstall + + mkdir $out + + cp -Lr ./result $out/bin + cp -r ./node $out/ + cp -r ./extensions $out/ + + chmod +w $out/bin + chmod +x $out/bin/Oni2 $out/bin/Oni2_editor + # Unset LANG and XMODIFIERS. See https://github.com/onivim/oni2/issues/3772 + # Unset SDL_VIDEODRIVER because Wayland is not supported. See https://github.com/onivim/oni2/issues/3438 + mv $out/bin/Oni2{,_unwrapped} + makeWrapper $out/bin/Oni2{_unwrapped,} --unset LANG --unset XMODIFIERS --unset SDL_VIDEODRIVER + mv $out/bin/Oni2_editor{,_unwrapped} + makeWrapper $out/bin/Oni2_editor{_unwrapped,} --unset LANG --unset XMODIFIERS --unset SDL_VIDEODRIVER + + rm -f $out/bin/setup.json + jq -n "{node: \"${nodejs}/bin/node\", nodeScript: \"$out/node\", bundledExtensions: \"$out/extensions\", rg: \"${ripgrep}/bin/rg\"}" > $out/bin/setup.json + + mkdir -p $out/share/applications $out/share/pixmaps + cp ${source}/scripts/linux/Onivim2.desktop $out/share/applications + cp ${source}/assets/images/icon512.png $out/share/pixmaps/Onivim2.png + + runHook postInstall + ''; + + meta = with lib; { + description = "Native, lightweight modal code editor"; + longDescription = '' + Onivim 2 is a reimagination of the Oni editor. Onivim 2 aims to bring the speed of Sublime, the language integration of VSCode, and the modal editing experience of Vim together, in a single package. + ''; + homepage = "https://v2.onivim.io/"; + inherit license; + maintainers = with maintainers; [ gardspirito ]; + platforms = [ "x86_64-linux" "x86_64-darwin" ]; + }; +}) + diff --git a/pkgs/applications/editors/oni2/default.nix b/pkgs/applications/editors/oni2/default.nix new file mode 100644 index 000000000000..6721cf24d96b --- /dev/null +++ b/pkgs/applications/editors/oni2/default.nix @@ -0,0 +1,16 @@ +{ callPackage }: + +let mkOni2 = callPackage ./common.nix { }; +in mkOni2 rec { + variant = "oni2"; + license = { + fullName = "Outrun Labs End User License Agreement"; + url = "https://github.com/onivim/oni2/blob/master/Outrun-Labs-EULA-v1.1.md"; + free = false; + }; + version = "0.5.7"; + rev = "v${version}"; + sha256 = "NlN0Ntdwtx5XLjd1ltUzv/bjmJQR5eyRqtmicppP6YU="; + fetchDepsSha256 = "k7G6jPJfxCCSuSucPfiXljCVJhmjl/BxWMCEjv2tfhA="; +} + diff --git a/pkgs/applications/editors/oni2/esy_skia_use_nixpkgs.patch b/pkgs/applications/editors/oni2/esy_skia_use_nixpkgs.patch new file mode 100644 index 000000000000..50a1802816c0 --- /dev/null +++ b/pkgs/applications/editors/oni2/esy_skia_use_nixpkgs.patch @@ -0,0 +1,13 @@ +diff --git a/build-or.sh b/build.sh +index be0bc6f..fddc9cb 100644 +--- a/build-or.sh ++++ b/build.sh +@@ -50,6 +50,6 @@ else + echo "llvm toolset-7.0 does not need to be manually activated" + fi + +- bin/gn gen $cur__target_dir/out/Static --script-executable="$PYTHON_BINARY" "--args=cc=\"$CC\" cxx=\"$CXX\" skia_use_system_libjpeg_turbo=true esy_skia_enable_svg=true is_debug=false extra_cflags=[\"-I${ESY_LIBJPEG_TURBO_PREFIX}/include\"] extra_ldflags=[\"-L${ESY_LIBJPEG_TURBO_PREFIX}/lib\", \"-ljpeg\" ]" || exit -1 +- ninja.exe -C $cur__target_dir/out/Static || exit -1 ++ gn gen $cur__target_dir/out/Static --script-executable="$PYTHON_BINARY" "--args=cc=\"$CC\" cxx=\"$CXX\" skia_use_system_libjpeg_turbo=true skia_use_system_expat=true skia_use_system_icu=true skia_use_system_libpng=true esy_skia_enable_svg=true is_debug=false extra_cflags=[\"-I${ESY_LIBJPEG_TURBO_PREFIX}/include\"] extra_ldflags=[\"-L${ESY_LIBJPEG_TURBO_PREFIX}/lib\", \"-ljpeg\" ]" || exit -1 ++ ninja -C $cur__target_dir/out/Static || exit -1 + fi diff --git a/pkgs/applications/editors/oni2/extensions.lock b/pkgs/applications/editors/oni2/extensions.lock new file mode 100644 index 000000000000..2e757cdf9464 --- /dev/null +++ b/pkgs/applications/editors/oni2/extensions.lock @@ -0,0 +1,497 @@ +# THIS IS AN AUTOGENERATED FILE. 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"http_proxy_agent___http_proxy_agent_2.1.0.tgz"; + path = fetchurl { + name = "http_proxy_agent___http_proxy_agent_2.1.0.tgz"; + url = "https://registry.yarnpkg.com/http-proxy-agent/-/http-proxy-agent-2.1.0.tgz"; + sha1 = "e4821beef5b2142a2026bd73926fe537631c5405"; + }; + } + { + name = "http_proxy_agent___http_proxy_agent_4.0.1.tgz"; + path = fetchurl { + name = "http_proxy_agent___http_proxy_agent_4.0.1.tgz"; + url = "https://registry.yarnpkg.com/http-proxy-agent/-/http-proxy-agent-4.0.1.tgz"; + sha1 = "8a8c8ef7f5932ccf953c296ca8291b95aa74aa3a"; + }; + } + { + name = "https_proxy_agent___https_proxy_agent_2.2.4.tgz"; + path = fetchurl { + name = "https_proxy_agent___https_proxy_agent_2.2.4.tgz"; + url = "https://registry.yarnpkg.com/https-proxy-agent/-/https-proxy-agent-2.2.4.tgz"; + sha1 = "4ee7a737abd92678a293d9b34a1af4d0d08c787b"; + }; + } + { + name = "https_proxy_agent___https_proxy_agent_5.0.0.tgz"; + path = fetchurl { + name = "https_proxy_agent___https_proxy_agent_5.0.0.tgz"; + url = "https://registry.yarnpkg.com/https-proxy-agent/-/https-proxy-agent-5.0.0.tgz"; + sha1 = "e2a90542abb68a762e0a0850f6c9edadfd8506b2"; + }; + } + { + name = "iconv_lite_umd___iconv_lite_umd_0.6.8.tgz"; + path = fetchurl { + name = "iconv_lite_umd___iconv_lite_umd_0.6.8.tgz"; + url = "https://registry.yarnpkg.com/iconv-lite-umd/-/iconv-lite-umd-0.6.8.tgz"; + sha1 = "5ad310ec126b260621471a2d586f7f37b9958ec0"; + }; + } + { + name = "inherits___inherits_2.0.4.tgz"; + path = fetchurl { + name = "inherits___inherits_2.0.4.tgz"; + url = "https://registry.yarnpkg.com/inherits/-/inherits-2.0.4.tgz"; + sha1 = "0fa2c64f932917c3433a0ded55363aae37416b7c"; + }; + } + { + name = "ip___ip_1.1.5.tgz"; + path = fetchurl { + name = "ip___ip_1.1.5.tgz"; + url = "https://registry.yarnpkg.com/ip/-/ip-1.1.5.tgz"; + sha1 = "bdded70114290828c0a039e72ef25f5aaec4354a"; + }; + } + { + name = "isarray___isarray_0.0.1.tgz"; + path = fetchurl { + name = "isarray___isarray_0.0.1.tgz"; + url = "https://registry.yarnpkg.com/isarray/-/isarray-0.0.1.tgz"; + sha1 = "8a18acfca9a8f4177e09abfc6038939b05d1eedf"; + }; + } + { + name = "jsonfile___jsonfile_4.0.0.tgz"; + path = fetchurl { + name = "jsonfile___jsonfile_4.0.0.tgz"; + url = "https://registry.yarnpkg.com/jsonfile/-/jsonfile-4.0.0.tgz"; + sha1 = "8771aae0799b64076b76640fca058f9c10e33ecb"; + }; + } + { + name = "minimist___minimist_1.2.5.tgz"; + path = fetchurl { + name = "minimist___minimist_1.2.5.tgz"; + url = "https://registry.yarnpkg.com/minimist/-/minimist-1.2.5.tgz"; + sha1 = "67d66014b66a6a8aaa0c083c5fd58df4e4e97602"; + }; + } + { + name = "mkdirp___mkdirp_0.5.5.tgz"; + path = fetchurl { + name = "mkdirp___mkdirp_0.5.5.tgz"; + url = "https://registry.yarnpkg.com/mkdirp/-/mkdirp-0.5.5.tgz"; + sha1 = "d91cefd62d1436ca0f41620e251288d420099def"; + }; + } + { + name = "ms___ms_2.0.0.tgz"; + path = fetchurl { + name = "ms___ms_2.0.0.tgz"; + url = "https://registry.yarnpkg.com/ms/-/ms-2.0.0.tgz"; + sha1 = "5608aeadfc00be6c2901df5f9861788de0d597c8"; + }; + } + { + name = "ms___ms_2.1.2.tgz"; + path = fetchurl { + name = "ms___ms_2.1.2.tgz"; + url = "https://registry.yarnpkg.com/ms/-/ms-2.1.2.tgz"; + sha1 = "d09d1f357b443f493382a8eb3ccd183872ae6009"; + }; + } + { + name = "nan___nan_2.15.0.tgz"; + path = fetchurl { + name = "nan___nan_2.15.0.tgz"; + url = "https://registry.yarnpkg.com/nan/-/nan-2.15.0.tgz"; + sha1 = "3f34a473ff18e15c1b5626b62903b5ad6e665fee"; + }; + } + { + name = "native_watchdog___native_watchdog_1.3.0.tgz"; + path = fetchurl { + name = "native_watchdog___native_watchdog_1.3.0.tgz"; + url = "https://registry.yarnpkg.com/native-watchdog/-/native-watchdog-1.3.0.tgz"; + sha1 = "88cee94c9dc766b85c8506eda14c8bd8c9618e27"; + }; + } + { + name = "node_addon_api___node_addon_api_3.2.1.tgz"; + path = fetchurl { + name = "node_addon_api___node_addon_api_3.2.1.tgz"; + url = "https://registry.yarnpkg.com/node-addon-api/-/node-addon-api-3.2.1.tgz"; + sha1 = "81325e0a2117789c0128dab65e7e38f07ceba161"; + }; + } + { + name = "node_pty___node_pty_0.11.0_beta7.tgz"; + path = fetchurl { + name = "node_pty___node_pty_0.11.0_beta7.tgz"; + url = "https://registry.yarnpkg.com/node-pty/-/node-pty-0.11.0-beta7.tgz"; + sha1 = "aed0888b5032d96c54d8473455e6adfae3bbebbe"; + }; + } + { + name = "pend___pend_1.2.0.tgz"; + path = fetchurl { + name = "pend___pend_1.2.0.tgz"; + url = "https://registry.yarnpkg.com/pend/-/pend-1.2.0.tgz"; + sha1 = "7a57eb550a6783f9115331fcf4663d5c8e007a50"; + }; + } + { + name = "readable_stream___readable_stream_1.1.14.tgz"; + path = fetchurl { + name = "readable_stream___readable_stream_1.1.14.tgz"; + url = "https://registry.yarnpkg.com/readable-stream/-/readable-stream-1.1.14.tgz"; + sha1 = "7cf4c54ef648e3813084c636dd2079e166c081d9"; + }; + } + { + name = "smart_buffer___smart_buffer_4.2.0.tgz"; + path = fetchurl { + name = "smart_buffer___smart_buffer_4.2.0.tgz"; + url = "https://registry.yarnpkg.com/smart-buffer/-/smart-buffer-4.2.0.tgz"; + sha1 = "6e1d71fa4f18c05f7d0ff216dd16a481d0e8d9ae"; + }; + } + { + name = "socks_proxy_agent___socks_proxy_agent_5.0.0.tgz"; + path = fetchurl { + name = "socks_proxy_agent___socks_proxy_agent_5.0.0.tgz"; + url = "https://registry.yarnpkg.com/socks-proxy-agent/-/socks-proxy-agent-5.0.0.tgz"; + sha1 = "7c0f364e7b1cf4a7a437e71253bed72e9004be60"; + }; + } + { + name = "socks___socks_2.6.1.tgz"; + path = fetchurl { + name = "socks___socks_2.6.1.tgz"; + url = "https://registry.yarnpkg.com/socks/-/socks-2.6.1.tgz"; + sha1 = "989e6534a07cf337deb1b1c94aaa44296520d30e"; + }; + } + { + name = "spdlog___spdlog_0.13.6.tgz"; + path = fetchurl { + name = "spdlog___spdlog_0.13.6.tgz"; + url = "https://registry.yarnpkg.com/spdlog/-/spdlog-0.13.6.tgz"; + sha1 = "26b2e13d46cbf8f2334c12ba2a8cc82de5a28f02"; + }; + } + { + name = "string_decoder___string_decoder_0.10.31.tgz"; + path = fetchurl { + name = "string_decoder___string_decoder_0.10.31.tgz"; + url = "https://registry.yarnpkg.com/string_decoder/-/string_decoder-0.10.31.tgz"; + sha1 = "62e203bc41766c6c28c9fc84301dab1c5310fa94"; + }; + } + { + name = "sudo_prompt___sudo_prompt_9.2.1.tgz"; + path = fetchurl { + name = "sudo_prompt___sudo_prompt_9.2.1.tgz"; + url = "https://registry.yarnpkg.com/sudo-prompt/-/sudo-prompt-9.2.1.tgz"; + sha1 = "77efb84309c9ca489527a4e749f287e6bdd52afd"; + }; + } + { + name = "typescript___typescript_3.9.10.tgz"; + path = fetchurl { + name = "typescript___typescript_3.9.10.tgz"; + url = "https://registry.yarnpkg.com/typescript/-/typescript-3.9.10.tgz"; + sha1 = "70f3910ac7a51ed6bef79da7800690b19bf778b8"; + }; + } + { + name = "universalify___universalify_0.1.2.tgz"; + path = fetchurl { + name = "universalify___universalify_0.1.2.tgz"; + url = "https://registry.yarnpkg.com/universalify/-/universalify-0.1.2.tgz"; + sha1 = "b646f69be3942dabcecc9d6639c80dc105efaa66"; + }; + } + { + name = "vscode_nls___vscode_nls_4.1.2.tgz"; + path = fetchurl { + name = "vscode_nls___vscode_nls_4.1.2.tgz"; + url = "https://registry.yarnpkg.com/vscode-nls/-/vscode-nls-4.1.2.tgz"; + sha1 = "ca8bf8bb82a0987b32801f9fddfdd2fb9fd3c167"; + }; + } + { + name = "vscode_proxy_agent___vscode_proxy_agent_0.11.0.tgz"; + path = fetchurl { + name = "vscode_proxy_agent___vscode_proxy_agent_0.11.0.tgz"; + url = "https://registry.yarnpkg.com/vscode-proxy-agent/-/vscode-proxy-agent-0.11.0.tgz"; + sha1 = "9dc8d2bb9d448f1e33bb1caef97a741289660f2f"; + }; + } + { + name = "vscode_regexpp___vscode_regexpp_3.1.0.tgz"; + path = fetchurl { + name = "vscode_regexpp___vscode_regexpp_3.1.0.tgz"; + url = "https://registry.yarnpkg.com/vscode-regexpp/-/vscode-regexpp-3.1.0.tgz"; + sha1 = "42d059b6fffe99bd42939c0d013f632f0cad823f"; + }; + } + { + name = "vscode_windows_ca_certs___vscode_windows_ca_certs_0.3.0.tgz"; + path = fetchurl { + name = "vscode_windows_ca_certs___vscode_windows_ca_certs_0.3.0.tgz"; + url = "https://registry.yarnpkg.com/vscode-windows-ca-certs/-/vscode-windows-ca-certs-0.3.0.tgz"; + sha1 = "324e1f8ba842bbf048a39e7c0ee8fe655e9adfcc"; + }; + } + { + name = "xregexp___xregexp_2.0.0.tgz"; + path = fetchurl { + name = "xregexp___xregexp_2.0.0.tgz"; + url = "https://registry.yarnpkg.com/xregexp/-/xregexp-2.0.0.tgz"; + sha1 = "52a63e56ca0b84a7f3a5f3d61872f126ad7a5943"; + }; + } + { + name = "yauzl___yauzl_2.10.0.tgz"; + path = fetchurl { + name = "yauzl___yauzl_2.10.0.tgz"; + url = "https://registry.yarnpkg.com/yauzl/-/yauzl-2.10.0.tgz"; + sha1 = "c7eb17c93e112cb1086fa6d8e51fb0667b79a5f9"; + }; + } + ]; +} diff --git a/pkgs/applications/editors/rstudio/default.nix b/pkgs/applications/editors/rstudio/default.nix index 3ccdd70c455c..62c3a93f76b4 100644 --- a/pkgs/applications/editors/rstudio/default.nix +++ b/pkgs/applications/editors/rstudio/default.nix @@ -168,8 +168,8 @@ mkDerivation rec { ''; postInstall = '' - mkdir -p $out/share/icons $out/bin - ln $out/lib/rstudio/rstudio.png $out/share/icons + mkdir -p $out/share/icons/hicolor/48x48/apps $out/bin + ln $out/lib/rstudio/rstudio.png $out/share/icons/hicolor/48x48/apps for f in {diagnostics,rpostback,rstudio}; do ln -s $out/lib/rstudio/bin/$f $out/bin diff --git a/pkgs/applications/editors/sublime/2/default.nix b/pkgs/applications/editors/sublime/2/default.nix index 7102d6951390..7f14bf8ae14b 100644 --- a/pkgs/applications/editors/sublime/2/default.nix +++ b/pkgs/applications/editors/sublime/2/default.nix @@ -1,26 +1,28 @@ { fetchurl, lib, stdenv, glib, xorg, cairo, gtk2, makeDesktopItem }: let - libPath = lib.makeLibraryPath [glib xorg.libX11 gtk2 cairo]; + libPath = lib.makeLibraryPath [ glib xorg.libX11 gtk2 cairo ]; in stdenv.mkDerivation rec { - name = "sublimetext-2.0.2"; + pname = "sublimetext"; + version = "2.0.2"; + src = if stdenv.hostPlatform.system == "i686-linux" then fetchurl { - name = "sublimetext-2.0.2.tar.bz2"; + name = "sublimetext-${version}.tar.bz2"; urls = [ - "http://c758482.r82.cf2.rackcdn.com/Sublime%20Text%202.0.2.tar.bz2" - "https://download.sublimetext.com/Sublime%20Text%202.0.2.tar.bz2" + "http://c758482.r82.cf2.rackcdn.com/Sublime%20Text%20${version}.tar.bz2" + "https://download.sublimetext.com/Sublime%20Text%20${version}.tar.bz2" ]; sha256 = "026g5mppk28lzzzn9ibykcqkrd5msfmg0sc0z8w8jd7v3h28wcq7"; } else fetchurl { - name = "sublimetext-2.0.2.tar.bz2"; + name = "sublimetext-${version}.tar.bz2"; urls = [ - "http://c758482.r82.cf2.rackcdn.com/Sublime%20Text%202.0.2.tar.bz2" - "https://download.sublimetext.com/Sublime%20Text%202.0.2%20x64.tar.bz2" + "http://c758482.r82.cf2.rackcdn.com/Sublime%20Text%20${version}.tar.bz2" + "https://download.sublimetext.com/Sublime%20Text%20${version}%20x64.tar.bz2" ]; sha256 = "115b71nbv9mv8cz6bkjwpbdf2ywnjc1zy2d3080f6ck4sqqfvfh1"; }; diff --git a/pkgs/applications/editors/supertux-editor/default.nix b/pkgs/applications/editors/supertux-editor/default.nix index ec713d99371b..6888cebec2d0 100644 --- a/pkgs/applications/editors/supertux-editor/default.nix +++ b/pkgs/applications/editors/supertux-editor/default.nix @@ -1,6 +1,6 @@ { lib, stdenv, fetchFromGitHub, mono, gtk-sharp-2_0, pkg-config, makeWrapper, gnome2, gtk2 }: stdenv.mkDerivation { - version = "git-2014-08-20"; + version = "unstable-2014-08-20"; pname = "supertux-editor"; src = fetchFromGitHub { @@ -11,7 +11,7 @@ stdenv.mkDerivation { }; nativeBuildInputs = [ pkg-config makeWrapper ]; - buildInputs = [mono gtk-sharp-2_0 gnome2.libglade gtk2 ]; + buildInputs = [ mono gtk-sharp-2_0 gnome2.libglade gtk2 ]; installPhase = '' mkdir -p $out/bin $out/lib/supertux-editor diff --git a/pkgs/applications/editors/thonny/default.nix b/pkgs/applications/editors/thonny/default.nix index fb5cb4b8e4c1..20d25bb616ff 100644 --- a/pkgs/applications/editors/thonny/default.nix +++ b/pkgs/applications/editors/thonny/default.nix @@ -1,4 +1,4 @@ -{ lib, fetchFromGitHub, python3 }: +{ lib, fetchFromGitHub, python3, makeDesktopItem, copyDesktopItems }: with python3.pkgs; @@ -13,6 +13,17 @@ buildPythonApplication rec { sha256 = "13l8blq7y6p7a235x2lfiqml1bd4ba2brm3vfvs8wasjh3fvm9g5"; }; + nativeBuildInputs = [ copyDesktopItems ]; + + desktopItems = [ (makeDesktopItem { + name = "Thonny"; + exec = "thonny"; + icon = "thonny"; + desktopName = "Thonny"; + comment = "Python IDE for beginners"; + categories = "Development;IDE"; + }) ]; + propagatedBuildInputs = with python3.pkgs; [ jedi pyserial @@ -34,6 +45,10 @@ buildPythonApplication rec { --prefix PYTHONPATH : $PYTHONPATH:$(toPythonPath ${python3.pkgs.jedi}) ''; + postInstall = '' + install -Dm644 ./packaging/icons/thonny-48x48.png $out/share/icons/hicolor/48x48/apps/thonny.png + ''; + # Tests need a DISPLAY doCheck = false; diff --git a/pkgs/applications/editors/vscode/vscode.nix b/pkgs/applications/editors/vscode/vscode.nix index d08f80fda6f5..0c2776778b53 100644 --- a/pkgs/applications/editors/vscode/vscode.nix +++ b/pkgs/applications/editors/vscode/vscode.nix @@ -14,17 +14,17 @@ let archive_fmt = if stdenv.isDarwin then "zip" else "tar.gz"; sha256 = { - x86_64-linux = "1yfaf9qdaf6njvj8kilmivyl0nnhdvd9hbzpf8hv3kw5rfpdvy89"; - x86_64-darwin = "10rx5aif61xipf5lcjzkidz9dhbm5gc2wf87c2j456nixaxbx0b4"; - aarch64-linux = "13h4ffdm9y9p3jnqcjvapykbm73bkjy5jaqwhsi293f9r7jfp9rf"; - aarch64-darwin = "07nmrxc25rfp5ibarhg3c14ksk2ymqmsnc55hicvvhw93g2qczby"; - armv7l-linux = "1gz1mmw2vp986l9sm7rd6hypxs70sz63sbmzyxwfqpvj973dl23q"; + x86_64-linux = "0dwpczbxqy3rsqprdiakmqv6s3jzcg2wqxnf1znarx2qffb4ii9x"; + x86_64-darwin = "0si76v80r0vhl76gbdwbykk6acifhifz8sb8wiyiiywkinlxs19w"; + aarch64-linux = "0nwgdvvsblh2r72ys2ng5b084wizkdjd00mm73506mgbs8pzcky4"; + aarch64-darwin = "0qivq4077g5a4gwkskvvzxaa60w1gpgl67pmdyqn81rina04rdqs"; + armv7l-linux = "0myf96s1vdpllnw0vz0rpmyv2pfirv3p8pqgxxnpw860s2c26f2f"; }.${system}; in callPackage ./generic.nix rec { # Please backport all compatible updates to the stable release. # This is important for the extension ecosystem. - version = "1.61.2"; + version = "1.62.2"; pname = "vscode"; executableName = "code" + lib.optionalString isInsiders "-insiders"; diff --git a/pkgs/applications/editors/vscode/vscodium.nix b/pkgs/applications/editors/vscode/vscodium.nix index f014bf1fda39..11623945c726 100644 --- a/pkgs/applications/editors/vscode/vscodium.nix +++ b/pkgs/applications/editors/vscode/vscodium.nix @@ -13,10 +13,10 @@ let archive_fmt = if system == "x86_64-darwin" then "zip" else "tar.gz"; sha256 = { - x86_64-linux = "1q260kjhyx8djl82275ii63z1mzypsz7rkz3pj1n2wjkwsnw276x"; - x86_64-darwin = "1scx155rm8j6dwn0i31b6ajsdxcn1n24p3k6dx248w0zyiwd5wm1"; - aarch64-linux = "1j788a0p767i65ying9pfg6rss8l7g76n2323dnmj12bhxs6cqd1"; - armv7l-linux = "1yfwmfxpilfv2h3pp698pg4wr6dnyzwg0r266xiwsw7z38jh54fk"; + x86_64-linux = "19r4883qa73b23xw0fz21bnp9vcvsbn1q77n6pcm1achwpxscrg6"; + x86_64-darwin = "0gv4208vcr75wyp6vji1cg6644f5yfwgkgkiav37218v1wjzb4r0"; + aarch64-linux = "00jzjapyj96bqqq6pz4mdlihwa5g1izkqcp4lqml7hqvmcqrjyrs"; + armv7l-linux = "0daji52lfbgz0by11idai55ip0m859s35vbyvgv655s21aakrs50"; }.${system}; sourceRoot = { @@ -31,7 +31,7 @@ in # Please backport all compatible updates to the stable release. # This is important for the extension ecosystem. - version = "1.61.2"; + version = "1.62.2"; pname = "vscodium"; executableName = "codium"; diff --git a/pkgs/applications/editors/your-editor/default.nix b/pkgs/applications/editors/your-editor/default.nix index a191943c3fd6..dd3bde160c37 100644 --- a/pkgs/applications/editors/your-editor/default.nix +++ b/pkgs/applications/editors/your-editor/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "your-editor"; - version = "1203"; + version = "1206"; src = fetchFromGitHub { owner = "kammerdienerb"; repo = "yed"; - rev = "608418f2037dc4ef5647e69fcef45302c50f138c"; - sha256 = "KqK2lcDTn91aCFJIDg+h+QsTrl7745So5aiKCxPkeh4="; + rev = "6cdd99fe1359899b26d8967bd376fd5caa5451eb"; + sha256 = "0XECSolW/xPXd1v3sv9HbJMWuHGnwCOwmHoPNCUsE+w="; }; installPhase = '' diff --git a/pkgs/applications/finance/odoo/default.nix b/pkgs/applications/finance/odoo/default.nix index aee699e85346..69acb43af861 100644 --- a/pkgs/applications/finance/odoo/default.nix +++ b/pkgs/applications/finance/odoo/default.nix @@ -3,19 +3,12 @@ , fetchurl , python3 , python3Packages +, nodePackages , wkhtmltopdf }: with python3Packages; -/* - -TODO: - For languages with right-to-left interface (such as Arabic or Hebrew), the package rtlcss is needed: - $ sudo npm install -g rtlcss - -*/ - buildPythonApplication rec { pname = "odoo"; @@ -40,12 +33,13 @@ buildPythonApplication rec { buildInputs = [ wkhtmltopdf + nodePackages.rtlcss ]; # needs some investigation doCheck = false; - makeWrapperArgs = [ "--prefix" "PATH" ":" "${wkhtmltopdf}/bin" ]; + makeWrapperArgs = [ "--prefix" "PATH" ":" "${lib.makeBinPath [ wkhtmltopdf nodePackages.rtlcss ]}" ]; propagatedBuildInputs = [ Babel diff --git a/pkgs/applications/gis/qmapshack/default.nix b/pkgs/applications/gis/qmapshack/default.nix index d0d39e299aa2..dd440dfffdac 100644 --- a/pkgs/applications/gis/qmapshack/default.nix +++ b/pkgs/applications/gis/qmapshack/default.nix @@ -1,5 +1,5 @@ -{ mkDerivation, lib, fetchFromGitHub, cmake -, qtscript, qtwebengine, gdal, proj, routino, quazip }: +{ mkDerivation, lib, fetchFromGitHub, cmake, substituteAll +, qtscript, qttranslations, qtwebengine, gdal, proj, routino, quazip }: mkDerivation rec { pname = "qmapshack"; @@ -12,6 +12,14 @@ mkDerivation rec { sha256 = "1yzgkdjxwyg8ggbxyjwr0zjrx99ckrbz2p2524iii9i7qqn8wfsx"; }; + patches = [ + # See https://github.com/NixOS/nixpkgs/issues/86054 + (substituteAll { + src = ./fix-qttranslations-path.patch; + inherit qttranslations; + }) + ]; + nativeBuildInputs = [ cmake ]; buildInputs = [ qtscript qtwebengine gdal proj routino quazip ]; diff --git a/pkgs/applications/gis/qmapshack/fix-qttranslations-path.patch b/pkgs/applications/gis/qmapshack/fix-qttranslations-path.patch new file mode 100644 index 000000000000..f91f4228d2ce --- /dev/null +++ b/pkgs/applications/gis/qmapshack/fix-qttranslations-path.patch @@ -0,0 +1,74 @@ +diff --git i/src/qmapshack/setup/CAppSetupLinux.cpp w/src/qmapshack/setup/CAppSetupLinux.cpp +index 63ea06c0..3a03b816 100644 +--- i/src/qmapshack/setup/CAppSetupLinux.cpp ++++ w/src/qmapshack/setup/CAppSetupLinux.cpp +@@ -30,7 +30,7 @@ void CAppSetupLinux::initQMapShack() + prepareGdal("", ""); + + // setup translators +- QString resourceDir = QLibraryInfo::location(QLibraryInfo::TranslationsPath); ++ QLatin1String resourceDir = QLatin1String("@qttranslations@/translations"); + QString translationPath = QCoreApplication::applicationDirPath(); + translationPath.replace(QRegExp("bin$"), "share/qmapshack/translations"); + prepareTranslator(resourceDir, "qt_"); +diff --git i/src/qmapshack/setup/CAppSetupMac.cpp w/src/qmapshack/setup/CAppSetupMac.cpp +index ad9b21e9..9dca8a1e 100644 +--- i/src/qmapshack/setup/CAppSetupMac.cpp ++++ w/src/qmapshack/setup/CAppSetupMac.cpp +@@ -63,7 +63,7 @@ void CAppSetupMac::initQMapShack() + + // setup translators + QString translationPath = getApplicationDir(relTranslationDir).absolutePath(); +- prepareTranslator(translationPath, "qt_"); ++ prepareTranslator(QLatin1String("@qttranslations@/translations"), "qt_"); + prepareTranslator(translationPath, "qmapshack_"); + + // load and apply style sheet +diff --git i/src/qmaptool/setup/CAppSetupLinux.cpp w/src/qmaptool/setup/CAppSetupLinux.cpp +index dea1c4f3..8da95574 100644 +--- i/src/qmaptool/setup/CAppSetupLinux.cpp ++++ w/src/qmaptool/setup/CAppSetupLinux.cpp +@@ -29,7 +29,7 @@ void CAppSetupLinux::initQMapTool() + prepareGdal("", ""); + + // setup translators +- QString resourceDir = QLibraryInfo::location(QLibraryInfo::TranslationsPath); ++ QLatin1String resourceDir = QLatin1String("@qttranslations@/translations"); + QString translationPath = QCoreApplication::applicationDirPath(); + translationPath.replace(QRegExp("bin$"), "share/qmaptool/translations"); + prepareTranslator(resourceDir, "qt_"); +diff --git i/src/qmaptool/setup/CAppSetupMac.cpp w/src/qmaptool/setup/CAppSetupMac.cpp +index 02b27e07..fae27748 100644 +--- i/src/qmaptool/setup/CAppSetupMac.cpp ++++ w/src/qmaptool/setup/CAppSetupMac.cpp +@@ -64,7 +64,7 @@ void CAppSetupMac::initQMapTool() + + // setup translators + QString translationPath = getApplicationDir(relTranslationDir).absolutePath(); +- prepareTranslator(translationPath, "qt_"); ++ prepareTranslator(QLatin1String("@qttranslations@/translations"), "qt_"); + prepareTranslator(translationPath, "qmaptool_"); + + migrateDirContent(defaultCachePath()); +diff --git i/src/qmt_rgb2pct/main.cpp w/src/qmt_rgb2pct/main.cpp +index 21267d03..d539cec8 100644 +--- i/src/qmt_rgb2pct/main.cpp ++++ w/src/qmt_rgb2pct/main.cpp +@@ -50,7 +50,7 @@ static void prepareTranslator(QString translationPath, QString translationPrefix + static void loadTranslations() + { + #if defined(Q_OS_LINUX) || defined(Q_OS_FREEBSD) || defined(__FreeBSD_kernel__) || defined(__GNU__) || defined(Q_OS_CYGWIN) +- QString resourceDir = QLibraryInfo::location(QLibraryInfo::TranslationsPath); ++ QLatin1String resourceDir = QLatin1String("@qttranslations@/translations"); + QString translationPath = QCoreApplication::applicationDirPath(); + translationPath.replace(QRegExp("bin$"), "share/" APP_STR "/translations"); + prepareTranslator(resourceDir, "qt_"); +@@ -61,7 +61,7 @@ static void loadTranslations() + // os x + static QString relTranslationDir = "Resources/translations"; // app + QString translationPath = getApplicationDir(relTranslationDir).absolutePath(); +- prepareTranslator(translationPath, "qt_"); ++ prepareTranslator(QLatin1String("@qttranslations@/translations"), "qt_"); + prepareTranslator(translationPath, APP_STR "_"); + #endif + diff --git a/pkgs/applications/graphics/akira/default.nix b/pkgs/applications/graphics/akira/default.nix index 430c582dd793..efa153df155d 100644 --- a/pkgs/applications/graphics/akira/default.nix +++ b/pkgs/applications/graphics/akira/default.nix @@ -71,5 +71,6 @@ stdenv.mkDerivation rec { license = licenses.gpl3Plus; maintainers = with maintainers; [ Br1ght0ne neonfuz ] ++ teams.pantheon.members; platforms = platforms.linux; + mainProgram = "com.github.akiraux.akira"; }; } diff --git a/pkgs/applications/graphics/autopanosiftc/default.nix b/pkgs/applications/graphics/autopanosiftc/default.nix index 129e3e547691..20874dd55e76 100644 --- a/pkgs/applications/graphics/autopanosiftc/default.nix +++ b/pkgs/applications/graphics/autopanosiftc/default.nix @@ -1,10 +1,11 @@ -{lib, stdenv, fetchurl, cmake, libpng, libtiff, libjpeg, panotools, libxml2 }: +{ lib, stdenv, fetchurl, cmake, libpng, libtiff, libjpeg, panotools, libxml2 }: -stdenv.mkDerivation { - name = "autopano-sift-C-2.5.1"; +stdenv.mkDerivation rec { + pname = "autopano-sift-C"; + version = "2.5.1"; src = fetchurl { - url = "mirror://sourceforge/hugin/autopano-sift-C-2.5.1.tar.gz"; + url = "mirror://sourceforge/hugin/autopano-sift-C-${version}.tar.gz"; sha256 = "0dqk8ff82gmy4v5ns5nr9gpzkc1p7c2y8c8fkid102r47wsjk44s"; }; diff --git a/pkgs/applications/graphics/autotrace/autofig.nix b/pkgs/applications/graphics/autotrace/autofig.nix index 0f53965786b9..9555dd4c02ed 100644 --- a/pkgs/applications/graphics/autotrace/autofig.nix +++ b/pkgs/applications/graphics/autotrace/autofig.nix @@ -1,7 +1,8 @@ { stdenv, fetchurl }: stdenv.mkDerivation { - name = "autofig-0.1"; + pname = "autofig"; + version = "0.1"; src = fetchurl { url = "http://autotrace.sourceforge.net/tools/autofig.tar.gz"; diff --git a/pkgs/applications/graphics/comical/default.nix b/pkgs/applications/graphics/comical/default.nix index 5c6ec804e62c..36da9d26410e 100644 --- a/pkgs/applications/graphics/comical/default.nix +++ b/pkgs/applications/graphics/comical/default.nix @@ -1,13 +1,16 @@ -{lib, stdenv, fetchurl, wxGTK, util-linux, zlib }: +{ lib, stdenv, fetchurl, wxGTK, util-linux, zlib }: stdenv.mkDerivation rec { - name = "comical-0.8"; + pname = "comical"; + version = "0.8"; + src = fetchurl { - url = "mirror://sourceforge/comical/${name}.tar.gz"; + url = "mirror://sourceforge/comical/comical-${version}.tar.gz"; sha256 = "0b6527cc06b25a937041f1eb248d0fd881cf055362097036b939817f785ab85e"; }; + buildInputs = [ wxGTK util-linux zlib ]; - preBuild="makeFlags=\"prefix=$out\""; + makeFlags = [ "prefix=${placeholder "out"}" ]; patches = [ ./wxgtk-2.8.patch ]; @@ -17,7 +20,7 @@ stdenv.mkDerivation rec { description = "Viewer of CBR and CBZ files, often used to store scanned comics"; homepage = "http://comical.sourceforge.net/"; license = lib.licenses.gpl2Plus; - maintainers = with lib.maintainers; [viric]; + maintainers = with lib.maintainers; [ viric ]; platforms = with lib.platforms; linux; }; } diff --git a/pkgs/applications/graphics/drawio/default.nix b/pkgs/applications/graphics/drawio/default.nix index 5bb94baf76f2..02c0fb409110 100644 --- a/pkgs/applications/graphics/drawio/default.nix +++ b/pkgs/applications/graphics/drawio/default.nix @@ -11,11 +11,11 @@ stdenv.mkDerivation rec { pname = "drawio"; - version = "14.5.1"; + version = "15.7.3"; src = fetchurl { url = "https://github.com/jgraph/drawio-desktop/releases/download/v${version}/drawio-x86_64-${version}.rpm"; - hash = "sha256-ZrEoeeEhHQOLm/L3KA43Ru5fruIPK35CCUsllwpPB58="; + sha256 = "3565bcceccb57daee222270164e85b696b8d261ab88b65699912da51946a1c36"; }; nativeBuildInputs = [ @@ -91,7 +91,7 @@ stdenv.mkDerivation rec { homepage = "https://about.draw.io/"; license = licenses.asl20; changelog = "https://github.com/jgraph/drawio-desktop/releases/tag/v${version}"; - maintainers = with maintainers; [ ]; + maintainers = with maintainers; [ darkonion0 ]; platforms = [ "x86_64-linux" ]; }; } diff --git a/pkgs/applications/graphics/exrdisplay/default.nix b/pkgs/applications/graphics/exrdisplay/default.nix index c31c1407da7e..2bb480a54f4d 100644 --- a/pkgs/applications/graphics/exrdisplay/default.nix +++ b/pkgs/applications/graphics/exrdisplay/default.nix @@ -1,10 +1,11 @@ { lib, stdenv, fetchurl, pkg-config, fltk, openexr, libGLU, libGL, ctl }: -stdenv.mkDerivation { - name ="openexr_viewers-2.2.1"; +stdenv.mkDerivation rec { + pname = "openexr_viewers"; + version = "2.2.1"; src = fetchurl { - url = "mirror://savannah/openexr/openexr_viewers-2.2.1.tar.gz"; + url = "mirror://savannah/openexr/openexr_viewers-${version}.tar.gz"; sha256 = "1ixx2wbjp4rvsf7h3bkja010gl1ihjrcjzy7h20jnn47ikg12vj8"; }; diff --git a/pkgs/applications/graphics/fbida/default.nix b/pkgs/applications/graphics/fbida/default.nix index 279f49e6a495..5f13136d0c8c 100644 --- a/pkgs/applications/graphics/fbida/default.nix +++ b/pkgs/applications/graphics/fbida/default.nix @@ -1,12 +1,33 @@ -{ lib, stdenv, fetchurl, libjpeg, libexif, giflib, libtiff, libpng, libwebp, libdrm -, pkg-config, freetype, fontconfig, which, imagemagick, curl, sane-backends, libXpm -, epoxy, poppler, mesa, lirc }: +{ lib +, stdenv +, fetchurl +, libjpeg +, libexif +, giflib +, libtiff +, libpng +, libwebp +, libdrm +, pkg-config +, freetype +, fontconfig +, which +, imagemagick +, curl +, sane-backends +, libXpm +, epoxy +, poppler +, mesa +, lirc +}: stdenv.mkDerivation rec { - name = "fbida-2.14"; + pname = "fbida"; + version = "2.14"; src = fetchurl { - url = "http://dl.bytesex.org/releases/fbida/${name}.tar.gz"; + url = "http://dl.bytesex.org/releases/fbida/fbida-${version}.tar.gz"; sha256 = "0f242mix20rgsqz1llibhsz4r2pbvx6k32rmky0zjvnbaqaw1dwm"; }; @@ -21,8 +42,22 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ pkg-config which ]; buildInputs = [ - libexif libjpeg libpng giflib freetype fontconfig libtiff libwebp - imagemagick curl sane-backends libdrm libXpm epoxy poppler lirc + libexif + libjpeg + libpng + giflib + freetype + fontconfig + libtiff + libwebp + imagemagick + curl + sane-backends + libdrm + libXpm + epoxy + poppler + lirc mesa ]; diff --git a/pkgs/applications/graphics/fondo/default.nix b/pkgs/applications/graphics/fondo/default.nix index abcb77f9f8b2..c8d6fc6030d6 100644 --- a/pkgs/applications/graphics/fondo/default.nix +++ b/pkgs/applications/graphics/fondo/default.nix @@ -58,15 +58,16 @@ stdenv.mkDerivation rec { patchShebangs meson/post_install.py ''; + passthru.updateScript = nix-update-script { + attrPath = pname; + }; + meta = with lib; { homepage = "https://github.com/calo001/fondo"; description = "Find the most beautiful wallpapers for your desktop"; license = licenses.agpl3Plus; maintainers = with maintainers; [ AndersonTorres ] ++ teams.pantheon.members; platforms = platforms.linux; - }; - - passthru.updateScript = nix-update-script { - attrPath = pname; + mainProgram = "com.github.calo001.fondo"; }; } diff --git a/pkgs/applications/graphics/freepv/default.nix b/pkgs/applications/graphics/freepv/default.nix index bf990c4d0ef8..d11798a9b290 100644 --- a/pkgs/applications/graphics/freepv/default.nix +++ b/pkgs/applications/graphics/freepv/default.nix @@ -1,11 +1,24 @@ -{ lib, stdenv, fetchurl, libjpeg, libGLU, libGL, freeglut, zlib, cmake, libX11, libxml2, libpng, - libXxf86vm }: +{ lib +, stdenv +, fetchurl +, libjpeg +, libGLU +, libGL +, freeglut +, zlib +, cmake +, libX11 +, libxml2 +, libpng +, libXxf86vm +}: -stdenv.mkDerivation { - name = "freepv-0.3.0"; +stdenv.mkDerivation rec { + pname = "freepv"; + version = "0.3.0"; src = fetchurl { - url = "mirror://sourceforge/freepv/freepv-0.3.0.tar.gz"; + url = "mirror://sourceforge/freepv/freepv-${version}.tar.gz"; sha256 = "1w19abqjn64w47m35alg7bcdl1p97nf11zn64cp4p0dydihmhv56"; }; diff --git a/pkgs/applications/graphics/gocr/default.nix b/pkgs/applications/graphics/gocr/default.nix index 3c87e62e3d66..21ba4c662c22 100644 --- a/pkgs/applications/graphics/gocr/default.nix +++ b/pkgs/applications/graphics/gocr/default.nix @@ -1,10 +1,11 @@ { lib, stdenv, fetchurl, tk }: stdenv.mkDerivation rec { - name = "gocr-0.52"; + pname = "gocr"; + version = "0.52"; src = fetchurl { - url = "https://www-e.uni-magdeburg.de/jschulen/ocr/${name}.tar.gz"; + url = "https://www-e.uni-magdeburg.de/jschulen/ocr/gocr-${version}.tar.gz"; sha256 = "11l6gds1lrm8lwrrsxnm5fjlwz8q1xbh896cprrl4psz21in946z"; }; diff --git a/pkgs/applications/graphics/gpicview/default.nix b/pkgs/applications/graphics/gpicview/default.nix index b661ba562f9d..edafa5612a2d 100644 --- a/pkgs/applications/graphics/gpicview/default.nix +++ b/pkgs/applications/graphics/gpicview/default.nix @@ -1,10 +1,11 @@ { lib, stdenv, fetchurl, intltool, pkg-config, gtk2, fetchpatch }: -stdenv.mkDerivation { - name = "gpicview-0.2.4"; +stdenv.mkDerivation rec { + pname = "gpicview"; + version = "0.2.4"; src = fetchurl { - url = "mirror://sourceforge/lxde/gpicview-0.2.4.tar.gz"; + url = "mirror://sourceforge/lxde/gpicview-${version}.tar.gz"; sha256 = "1svcy1c8bgk0pl12yhyv16h2fl52x5vzzcv57z6qdcv5czgvgglr"; }; @@ -15,15 +16,16 @@ stdenv.mkDerivation { }) ]; + nativeBuildInputs = [ pkg-config ]; + + buildInputs = [ intltool gtk2 ]; + meta = with lib; { description = "A simple and fast image viewer for X"; - homepage = "http://lxde.sourceforge.net/gpicview/"; + homepage = "http://lxde.sourceforge.net/gpicview/"; repositories.git = "git://lxde.git.sourceforge.net/gitroot/lxde/gpicview"; - license = licenses.gpl2; + license = licenses.gpl2; maintainers = with maintainers; [ lovek323 ]; - platforms = platforms.unix; + platforms = platforms.unix; }; - - nativeBuildInputs = [ pkg-config ]; - buildInputs = [ intltool gtk2 ]; } diff --git a/pkgs/applications/graphics/gqview/default.nix b/pkgs/applications/graphics/gqview/default.nix index 39f7a42b3b3b..427429404a09 100644 --- a/pkgs/applications/graphics/gqview/default.nix +++ b/pkgs/applications/graphics/gqview/default.nix @@ -1,20 +1,17 @@ -{lib, stdenv, fetchurl, pkg-config, gtk2, libpng}: +{ lib, stdenv, fetchurl, pkg-config, gtk2, libpng }: -assert pkg-config != null && gtk2 != null && libpng != null; -# Note that we cannot just copy gtk's png attribute, since gtk might -# not be linked against png. -# !!! assert libpng == gtk2.libpng; - -stdenv.mkDerivation { - name = "gqview-2.1.5"; +stdenv.mkDerivation rec { + pname = "gqview"; + version = "2.1.5"; src = fetchurl { - url = "mirror://sourceforge/gqview/gqview-2.1.5.tar.gz"; + url = "mirror://sourceforge/gqview/gqview-${version}.tar.gz"; sha256 = "0ilm5s7ps9kg4f5hzgjhg0xhn6zg0v9i7jnd67zrx9h7wsaa9zhj"; }; nativeBuildInputs = [ pkg-config ]; - buildInputs = [ gtk2 libpng]; + + buildInputs = [ gtk2 libpng ]; hardeningDisable = [ "format" ]; @@ -25,5 +22,6 @@ stdenv.mkDerivation { homepage = "http://gqview.sourceforge.net"; license = licenses.gpl2; platforms = platforms.unix; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/applications/graphics/graphicsmagick/default.nix b/pkgs/applications/graphics/graphicsmagick/default.nix index 13752bfc05db..268e59d910b5 100644 --- a/pkgs/applications/graphics/graphicsmagick/default.nix +++ b/pkgs/applications/graphics/graphicsmagick/default.nix @@ -45,5 +45,6 @@ stdenv.mkDerivation rec { description = "Swiss army knife of image processing"; license = lib.licenses.mit; platforms = lib.platforms.all; + mainProgram = "gm"; }; } diff --git a/pkgs/applications/graphics/hugin/default.nix b/pkgs/applications/graphics/hugin/default.nix index a83070e5e6b6..ec2ac709f868 100644 --- a/pkgs/applications/graphics/hugin/default.nix +++ b/pkgs/applications/graphics/hugin/default.nix @@ -1,14 +1,46 @@ -{ lib, stdenv, cmake, fetchurl, gnumake, makeWrapper, pkg-config, fetchpatch -, autopanosiftc, boost, cairo, enblend-enfuse, exiv2, fftw, flann, gettext -, glew, ilmbase, lcms2, lensfun, libjpeg, libpng, libtiff, libX11, libXi -, libXmu, libGLU, libGL, openexr, panotools, perlPackages, sqlite, vigra, wxGTK, zlib +{ lib +, stdenv +, cmake +, fetchurl +, gnumake +, makeWrapper +, pkg-config +, fetchpatch +, autopanosiftc +, boost +, cairo +, enblend-enfuse +, exiv2 +, fftw +, flann +, gettext +, glew +, ilmbase +, lcms2 +, lensfun +, libjpeg +, libpng +, libtiff +, libX11 +, libXi +, libXmu +, libGLU +, libGL +, openexr +, panotools +, perlPackages +, sqlite +, vigra +, wxGTK +, zlib }: stdenv.mkDerivation rec { - name = "hugin-2019.0.0"; + pname = "hugin"; + version = "2019.0.0"; src = fetchurl { - url = "mirror://sourceforge/hugin/${name}.tar.bz2"; + url = "mirror://sourceforge/hugin/hugin-${version}.tar.bz2"; sha256 = "1l925qslp98gg7yzmgps10h6dq0nb60wbfk345anlxsv0g2ifizr"; }; @@ -21,9 +53,30 @@ stdenv.mkDerivation rec { ]; buildInputs = [ - boost cairo exiv2 fftw flann gettext glew ilmbase lcms2 lensfun libjpeg - libpng libtiff libX11 libXi libXmu libGLU libGL openexr panotools sqlite vigra - wxGTK zlib + boost + cairo + exiv2 + fftw + flann + gettext + glew + ilmbase + lcms2 + lensfun + libjpeg + libpng + libtiff + libX11 + libXi + libXmu + libGLU + libGL + openexr + panotools + sqlite + vigra + wxGTK + zlib ]; nativeBuildInputs = [ cmake makeWrapper pkg-config ]; diff --git a/pkgs/applications/graphics/hydrus/default.nix b/pkgs/applications/graphics/hydrus/default.nix index 36dad897668c..f5ea3f6f1af4 100644 --- a/pkgs/applications/graphics/hydrus/default.nix +++ b/pkgs/applications/graphics/hydrus/default.nix @@ -10,14 +10,14 @@ python3Packages.buildPythonPackage rec { pname = "hydrus"; - version = "458"; + version = "461"; format = "other"; src = fetchFromGitHub { owner = "hydrusnetwork"; repo = "hydrus"; rev = "v${version}"; - sha256 = "sha256-oVNgXelFMVT5V41SRlnN+pnYzOWbdDKQQcvRWFZqEro="; + sha256 = "sha256-fVqMSzQ4VhiRh6gDFApln1jioIDs80ceyV+ClNRhjKA="; }; nativeBuildInputs = [ diff --git a/pkgs/applications/graphics/ideogram/default.nix b/pkgs/applications/graphics/ideogram/default.nix index f9b123ddb40b..bc608c6735ff 100644 --- a/pkgs/applications/graphics/ideogram/default.nix +++ b/pkgs/applications/graphics/ideogram/default.nix @@ -63,6 +63,7 @@ stdenv.mkDerivation rec { license = licenses.gpl2Plus; maintainers = teams.pantheon.members; platforms = platforms.linux; + mainProgram = "com.github.cassidyjames.ideogram"; }; } diff --git a/pkgs/applications/graphics/imgbrd-grabber/default.nix b/pkgs/applications/graphics/imgbrd-grabber/default.nix index c0115d95ac80..e9f415f722dc 100644 --- a/pkgs/applications/graphics/imgbrd-grabber/default.nix +++ b/pkgs/applications/graphics/imgbrd-grabber/default.nix @@ -6,6 +6,7 @@ , qttools , qtscript , qtdeclarative +, qtnetworkauth , qtbase , autogen , automake @@ -17,15 +18,16 @@ , rsync , typescript }: + stdenv.mkDerivation rec { pname = "imgbrd-grabber"; + version = "7.5.1"; - version = "7.3.2"; src = fetchFromGitHub { owner = "Bionus"; repo = "imgbrd-grabber"; rev = "v${version}"; - sha256 = "053rwvcr88fcba0447a6r115cgnqsm9rl066z8d5jacqnhdij58k"; + sha256 = "sha256-40JCdtRhAQpz2lBGmYh2MgA9rRzHmOZx7lWW0IbfjP4="; fetchSubmodules = true; }; @@ -41,6 +43,7 @@ stdenv.mkDerivation rec { qtbase qtdeclarative qttools + qtnetworkauth nodejs cmake wrapQtAppsHook @@ -67,6 +70,8 @@ stdenv.mkDerivation rec { # link the catch2 sources from nixpkgs ln -sf ${catch2.src} tests/src/vendor/catch + + sed "s|strict\": true|strict\": false|g" -i ./sites/tsconfig.json ''; postInstall = '' diff --git a/pkgs/applications/graphics/minidjvu/default.nix b/pkgs/applications/graphics/minidjvu/default.nix index 40b28dd8566a..f0693cc6121f 100644 --- a/pkgs/applications/graphics/minidjvu/default.nix +++ b/pkgs/applications/graphics/minidjvu/default.nix @@ -1,9 +1,11 @@ -{lib, stdenv, fetchurl, libtiff, gettext }: +{ lib, stdenv, fetchurl, libtiff, gettext }: + +stdenv.mkDerivation rec { + pname = "minidjvu"; + version = "0.8"; -stdenv.mkDerivation { - name = "minidjvu-0.8"; src = fetchurl { - url = "mirror://sourceforge/minidjvu/minidjvu-0.8.tar.gz"; + url = "mirror://sourceforge/minidjvu/minidjvu-${version}.tar.gz"; sha256 = "0jmpvy4g68k6xgplj9zsl6brg6vi81mx3nx2x9hfbr1f4zh95j79"; }; @@ -11,7 +13,7 @@ stdenv.mkDerivation { sed -i s,/usr/bin/gzip,gzip, Makefile.in ''; - buildInputs = [ libtiff gettext]; + buildInputs = [ libtiff gettext ]; preInstall = '' mkdir -p $out/lib diff --git a/pkgs/applications/graphics/monado/default.nix b/pkgs/applications/graphics/monado/default.nix index 219613ad0ce5..028066427951 100644 --- a/pkgs/applications/graphics/monado/default.nix +++ b/pkgs/applications/graphics/monado/default.nix @@ -19,6 +19,7 @@ , libXau , libXdmcp , libXrandr +, libbsd , libffi , libjpeg # , librealsense @@ -88,6 +89,7 @@ stdenv.mkDerivation rec { libXau libXdmcp libXrandr + libbsd libjpeg libffi # librealsense.dev - see below diff --git a/pkgs/applications/graphics/photivo/default.nix b/pkgs/applications/graphics/photivo/default.nix index 4acb50e200fd..338f716e9bbd 100644 --- a/pkgs/applications/graphics/photivo/default.nix +++ b/pkgs/applications/graphics/photivo/default.nix @@ -1,8 +1,22 @@ -{ lib, stdenv, fetchhg, fetchpatch, cmake, qt4, fftw, graphicsmagick_q16, - lcms2, lensfun, pkg-config, libjpeg, exiv2, liblqr1 }: +{ lib +, stdenv +, fetchhg +, fetchpatch +, cmake +, qt4 +, fftw +, graphicsmagick_q16 +, lcms2 +, lensfun +, pkg-config +, libjpeg +, exiv2 +, liblqr1 +}: stdenv.mkDerivation { - name = "photivo-2014-01-25"; + pname = "photivo"; + version = "2014-01-25"; src = fetchhg { url = "http://code.google.com/p/photivo/"; diff --git a/pkgs/applications/graphics/pinta/default.nix b/pkgs/applications/graphics/pinta/default.nix index 2635b2d3d886..66804fc3110b 100644 --- a/pkgs/applications/graphics/pinta/default.nix +++ b/pkgs/applications/graphics/pinta/default.nix @@ -1,14 +1,18 @@ -{ lib, fetchFromGitHub, buildDotnetPackage, dotnetPackages, gtksharp, - gettext }: +{ lib +, fetchFromGitHub +, buildDotnetPackage +, dotnetPackages +, gtksharp +, gettext +}: let mono-addins = dotnetPackages.MonoAddins; in buildDotnetPackage rec { - name = "pinta-1.6"; - baseName = "Pinta"; version = "1.6"; + outputFiles = [ "bin/*" ]; buildInputs = [ gtksharp mono-addins gettext ]; xBuildFiles = [ "Pinta.sln" ]; @@ -37,23 +41,25 @@ buildDotnetPackage rec { "Mono\\.Addins\\.Setup" ]; - stripVersion = name: file: let + stripVersion = name: file: + let match = ''<Reference Include="${name}([ ,][^"]*)?"''; replace = ''<Reference Include="${name}"''; - in "sed -i -re 's/${match}/${replace}/g' ${file}\n"; + in + "sed -i -re 's/${match}/${replace}/g' ${file}\n"; # Map all possible pairs of two lists map2 = f: listA: listB: concatMap (a: map (f a) listB) listA; concatMap2Strings = f: listA: listB: concatStrings (map2 f listA listB); in - concatMap2Strings stripVersion versionedNames csprojFiles - + '' - # For some reason there is no Microsoft.Common.tasks file - # in ''${mono}/lib/mono/3.5 . - substituteInPlace Pinta.Install.proj \ - --replace 'ToolsVersion="3.5"' 'ToolsVersion="4.0"' \ - --replace "/usr/local" "$out" - ''; + concatMap2Strings stripVersion versionedNames csprojFiles + + '' + # For some reason there is no Microsoft.Common.tasks file + # in ''${mono}/lib/mono/3.5 . + substituteInPlace Pinta.Install.proj \ + --replace 'ToolsVersion="3.5"' 'ToolsVersion="4.0"' \ + --replace "/usr/local" "$out" + ''; makeWrapperArgs = [ "--prefix MONO_GAC_PREFIX : ${gtksharp}" diff --git a/pkgs/applications/graphics/qscreenshot/default.nix b/pkgs/applications/graphics/qscreenshot/default.nix index b3e555358bed..6a47760082e0 100644 --- a/pkgs/applications/graphics/qscreenshot/default.nix +++ b/pkgs/applications/graphics/qscreenshot/default.nix @@ -1,10 +1,11 @@ { lib, stdenv, fetchurl, dos2unix, which, qt, Carbon }: stdenv.mkDerivation rec { - name = "qscreenshot-1.0"; + pname = "qscreenshot"; + version = "1.0"; src = fetchurl { - url = "mirror://sourceforge/qscreenshot/${name}-src.tar.gz"; + url = "mirror://sourceforge/qscreenshot/qscreenshot-${version}-src.tar.gz"; sha256 = "1spj5fg2l8p5bk81xsv6hqn1kcrdiy54w19jsfb7g5i94vcb1pcx"; }; diff --git a/pkgs/applications/graphics/sane/backends/brscan4/udev_rules_type1.nix b/pkgs/applications/graphics/sane/backends/brscan4/udev_rules_type1.nix index 9ca0a7020609..05b018215bb1 100644 --- a/pkgs/applications/graphics/sane/backends/brscan4/udev_rules_type1.nix +++ b/pkgs/applications/graphics/sane/backends/brscan4/udev_rules_type1.nix @@ -1,10 +1,11 @@ -{ lib, stdenv, fetchurl, libsaneUDevRuleNumber ? "49"}: +{ lib, stdenv, fetchurl, libsaneUDevRuleNumber ? "49" }: stdenv.mkDerivation rec { - name = "brother-udev-rule-type1-1.0.0-1"; + pname = "brother-udev-rule-type1"; + version = "1.0.0-1"; src = fetchurl { - url = "http://download.brother.com/welcome/dlf006654/${name}.all.deb"; + url = "http://download.brother.com/welcome/dlf006654/brother-udev-rule-type1-${version}.all.deb"; sha256 = "0i0x5jw135pli4jl9mgnr5n2rrdvml57nw84yq2999r4frza53xi"; }; diff --git a/pkgs/applications/graphics/sane/xsane.nix b/pkgs/applications/graphics/sane/xsane.nix index e394acf2b061..007483fb5e26 100644 --- a/pkgs/applications/graphics/sane/xsane.nix +++ b/pkgs/applications/graphics/sane/xsane.nix @@ -1,15 +1,23 @@ -{ lib, stdenv, fetchurl, sane-backends, sane-frontends, libX11, gtk2, pkg-config, libpng -, libusb-compat-0_1 ? null -, gimpSupport ? false, gimp ? null +{ lib +, stdenv +, fetchurl +, sane-backends +, sane-frontends +, libX11 +, gtk2 +, pkg-config +, libpng +, libusb-compat-0_1 +, gimpSupport ? false +, gimp }: -assert gimpSupport -> gimp != null; - stdenv.mkDerivation rec { - name = "xsane-0.999"; + pname = "xsane"; + version = "0.999"; src = fetchurl { - url = "http://www.xsane.org/download/${name}.tar.gz"; + url = "http://www.xsane.org/download/xsane-${version}.tar.gz"; sha256 = "0jrb918sfb9jw3vmrz0z7np4q55hgsqqffpixs0ir5nwcwzd50jp"; }; @@ -19,14 +27,15 @@ stdenv.mkDerivation rec { ''; nativeBuildInputs = [ pkg-config ]; - buildInputs = [libpng sane-backends sane-frontends libX11 gtk2 ] - ++ (if libusb-compat-0_1 != null then [libusb-compat-0_1] else []) + + buildInputs = [ libpng libusb-compat-0_1 sane-backends sane-frontends libX11 gtk2 ] ++ lib.optional gimpSupport gimp; - meta = { + meta = with lib; { homepage = "http://www.sane-project.org/"; description = "Graphical scanning frontend for sane"; - license = lib.licenses.gpl2Plus; - platforms = with lib.platforms; linux; + license = licenses.gpl2Plus; + platforms = platforms.linux; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/applications/graphics/scantailor/default.nix b/pkgs/applications/graphics/scantailor/default.nix index 898cc3336a55..a0e52ab5d303 100644 --- a/pkgs/applications/graphics/scantailor/default.nix +++ b/pkgs/applications/graphics/scantailor/default.nix @@ -1,10 +1,11 @@ -{lib, stdenv, fetchurl, qt4, cmake, libjpeg, libtiff, boost }: +{ lib, stdenv, fetchurl, qt4, cmake, libjpeg, libtiff, boost }: -stdenv.mkDerivation { - name = "scantailor-0.9.12.1"; +stdenv.mkDerivation rec { + pname = "scantailor"; + version = "0.9.12.1"; src = fetchurl { - url = "https://github.com/scantailor/scantailor/archive/RELEASE_0_9_12_1.tar.gz"; + url = "https://github.com/scantailor/scantailor/archive/RELEASE_${lib.replaceStrings ["."] ["_"] version}.tar.gz"; sha256 = "1pjx3a6hs16az6rki59bchy3biy7jndjx8r125q01aq7lbf5npgg"; }; diff --git a/pkgs/applications/graphics/shutter/default.nix b/pkgs/applications/graphics/shutter/default.nix index c7e55be9f041..a6430f4889b9 100644 --- a/pkgs/applications/graphics/shutter/default.nix +++ b/pkgs/applications/graphics/shutter/default.nix @@ -10,6 +10,7 @@ , procps , libwnck , libappindicator-gtk3 +, xdg-utils }: let @@ -64,13 +65,13 @@ let in stdenv.mkDerivation rec { pname = "shutter"; - version = "0.99"; + version = "0.99.2"; src = fetchFromGitHub { owner = "shutter-project"; repo = "shutter"; rev = "v${version}"; - sha256 = "sha256-n5M+Ggk8ulJQMWjAW+/fC8fbqiBGzsx6IXlYxvf8utA="; + sha256 = "sha256-o95skSr6rszh0wsHQTpu1GjqCDmde7aygIP+i4XQW9A="; }; nativeBuildInputs = [ wrapGAppsHook ]; @@ -81,6 +82,7 @@ stdenv.mkDerivation rec { librsvg libwnck libappindicator-gtk3 + hicolor-icon-theme ] ++ perlModules; makeFlags = [ @@ -94,9 +96,7 @@ stdenv.mkDerivation rec { preFixup = '' gappsWrapperArgs+=( --set PERL5LIB ${perlPackages.makePerlPath perlModules} \ - --prefix PATH : ${lib.makeBinPath [ imagemagick ] } \ - --suffix XDG_DATA_DIRS : ${hicolor-icon-theme}/share \ - --set GDK_PIXBUF_MODULE_FILE $GDK_PIXBUF_MODULE_FILE + --prefix PATH : ${lib.makeBinPath [ imagemagick xdg-utils ] } ) ''; diff --git a/pkgs/applications/graphics/smartdeblur/default.nix b/pkgs/applications/graphics/smartdeblur/default.nix index 6a835fb3c71a..c82e22ae0ca8 100644 --- a/pkgs/applications/graphics/smartdeblur/default.nix +++ b/pkgs/applications/graphics/smartdeblur/default.nix @@ -1,15 +1,14 @@ -{ fetchurl, lib, stdenv, cmake, qt4, fftw }: +{ lib, stdenv, fetchFromGitHub, cmake, qt4, fftw }: -let - rev = "9895036d26"; -in stdenv.mkDerivation rec { - name = "smartdeblur-git-${rev}"; + pname = "smartdeblur"; + version = "unstable-2013-01-09"; - src = fetchurl { - url = "https://github.com/Y-Vladimir/SmartDeblur/tarball/${rev}"; - name = "${name}.tar.gz"; - sha256 = "126x9x1zhqdarjz9in0p1qhmqg3jwz7frizadjvx723g2ppi33s4"; + src = fetchFromGitHub { + owner = "Y-Vladimir"; + repo = "SmartDeblur"; + rev = "9895036d26cbb823a9ade28cdcb26fd0ac37258e"; + sha256 = "sha256-+EbqEpOG1fj2OKmlz8NRF/CGfT2OYGwY5/lwJHCHaMw="; }; preConfigure = '' @@ -21,11 +20,11 @@ stdenv.mkDerivation rec { cmakeFlags = [ "-DUSE_SYSTEM_FFTW=ON" ]; - meta = { + meta = with lib; { homepage = "https://github.com/Y-Vladimir/SmartDeblur"; description = "Tool for restoring blurry and defocused images"; - license = lib.licenses.gpl3; - maintainers = with lib.maintainers; [ ]; - platforms = with lib.platforms; linux; + license = licenses.gpl3; + maintainers = with maintainers; [ ]; + platforms = platforms.linux; }; } diff --git a/pkgs/applications/graphics/wings/default.nix b/pkgs/applications/graphics/wings/default.nix index ef8d4b5096e6..53f658590739 100644 --- a/pkgs/applications/graphics/wings/default.nix +++ b/pkgs/applications/graphics/wings/default.nix @@ -1,9 +1,11 @@ { fetchurl, lib, stdenv, erlang, cl, libGL, libGLU, runtimeShell }: stdenv.mkDerivation rec { - name = "wings-2.2.4"; + pname = "wings"; + version = "2.2.4"; + src = fetchurl { - url = "mirror://sourceforge/wings/${name}.tar.bz2"; + url = "mirror://sourceforge/wings/wings-${version}.tar.bz2"; sha256 = "1xcmifs4vq2810pqqvsjsm8z3lz24ys4c05xkh82nyppip2s89a3"; }; @@ -24,13 +26,13 @@ stdenv.mkDerivation rec { # I did not test the *cl* part. I added the -pa just by imitation. installPhase = '' - mkdir -p $out/bin $out/lib/${name}/ebin - cp ebin/* $out/lib/${name}/ebin - cp -R textures shaders plugins $out/lib/$name + mkdir -p $out/bin $out/lib/wings-${version}/ebin + cp ebin/* $out/lib/wings-${version}/ebin + cp -R textures shaders plugins $out/lib/wings-${version} cat << EOF > $out/bin/wings #!${runtimeShell} ${erlang}/bin/erl \ - -pa $out/lib/${name}/ebin -run wings_start start_halt "$@" + -pa $out/lib/wings-${version}/ebin -run wings_start start_halt "$@" EOF chmod +x $out/bin/wings ''; @@ -39,7 +41,7 @@ stdenv.mkDerivation rec { homepage = "http://www.wings3d.com/"; description = "Subdivision modeler inspired by Nendo and Mirai from Izware"; license = lib.licenses.tcltk; - maintainers = with lib.maintainers; [viric]; + maintainers = with lib.maintainers; [ viric ]; platforms = with lib.platforms; linux; }; } diff --git a/pkgs/applications/kde/fetch.sh b/pkgs/applications/kde/fetch.sh index 5742a9b85c4c..f4eb1b85965d 100644 --- a/pkgs/applications/kde/fetch.sh +++ b/pkgs/applications/kde/fetch.sh @@ -1 +1 @@ -WGET_ARGS=( https://download.kde.org/stable/release-service/21.08.2/src -A '*.tar.xz' ) +WGET_ARGS=( https://download.kde.org/stable/release-service/21.08.3/src -A '*.tar.xz' ) diff --git a/pkgs/applications/kde/srcs.nix b/pkgs/applications/kde/srcs.nix index 43fc81b3c247..73032655fc43 100644 --- a/pkgs/applications/kde/srcs.nix +++ b/pkgs/applications/kde/srcs.nix @@ -4,1811 +4,1811 @@ { akonadi = { - version = "21.08.2"; + version = "21.08.3"; src = fetchurl { - url = "${mirror}/stable/release-service/21.08.2/src/akonadi-21.08.2.tar.xz"; - sha256 = "0jwhjdqha82hbyg2wmzjl5qi2rgmyd2sghdw85s77y63bxm9f0s2"; - name = "akonadi-21.08.2.tar.xz"; + url = "${mirror}/stable/release-service/21.08.3/src/akonadi-21.08.3.tar.xz"; + sha256 = "1yqlgzni7kj0n7k2wvi65wfz4il75j7qvmrdjw3a0ld6115j2vqs"; + name = "akonadi-21.08.3.tar.xz"; }; }; akonadi-calendar = { - version = "21.08.2"; + version = "21.08.3"; src = fetchurl { - url = "${mirror}/stable/release-service/21.08.2/src/akonadi-calendar-21.08.2.tar.xz"; - sha256 = "0k4cbcr6cw9rcrzidlbjbpshmsfh0p2m8bd9inkgzxi08drwizsa"; - name = "akonadi-calendar-21.08.2.tar.xz"; + url = "${mirror}/stable/release-service/21.08.3/src/akonadi-calendar-21.08.3.tar.xz"; + sha256 = "17pl7viz89zn43iyp6hk9q2dix1mzfxmxf08jk5wcciphabyj2sc"; + name = "akonadi-calendar-21.08.3.tar.xz"; }; }; akonadi-calendar-tools = { - version = "21.08.2"; + version = "21.08.3"; src = fetchurl { - url = "${mirror}/stable/release-service/21.08.2/src/akonadi-calendar-tools-21.08.2.tar.xz"; - sha256 = "1hxah75grydlaz6hzd3ng91dsap860111alph7vnrqcakhcfm0yc"; - name = "akonadi-calendar-tools-21.08.2.tar.xz"; + url = "${mirror}/stable/release-service/21.08.3/src/akonadi-calendar-tools-21.08.3.tar.xz"; + sha256 = "0wc3yfb8riijmmwqbny7vpfav24w8id4s2ysbcljrvypv420ii2g"; + name = "akonadi-calendar-tools-21.08.3.tar.xz"; }; }; akonadi-contacts = { - version = "21.08.2"; + version = "21.08.3"; src = fetchurl { - url = "${mirror}/stable/release-service/21.08.2/src/akonadi-contacts-21.08.2.tar.xz"; - sha256 = "1ap2c16c0z4m7f3zsp5w5wqwcdr3fn1n2kvb6d647c3knszgibvg"; - name = "akonadi-contacts-21.08.2.tar.xz"; + url = "${mirror}/stable/release-service/21.08.3/src/akonadi-contacts-21.08.3.tar.xz"; + sha256 = "1i5mwjf8vp40mmdfkafhhbcmvdd2sihd6aa4z1wnhnbg59cjvp8i"; + name = "akonadi-contacts-21.08.3.tar.xz"; }; }; akonadi-import-wizard = { - version = "21.08.2"; + version = "21.08.3"; src = fetchurl { - url = "${mirror}/stable/release-service/21.08.2/src/akonadi-import-wizard-21.08.2.tar.xz"; - sha256 = "0hgbjdkl4nva9dy9ljn8f5g4v9bw1rl84x2m0x94msf6bih20nr3"; - name = "akonadi-import-wizard-21.08.2.tar.xz"; + url = "${mirror}/stable/release-service/21.08.3/src/akonadi-import-wizard-21.08.3.tar.xz"; + sha256 = "1splq2fgifk4mh00j4dd1lmgyc4bvz8sbsw0fznmafg76k1fvama"; + name = "akonadi-import-wizard-21.08.3.tar.xz"; }; }; akonadi-mime = { - version = "21.08.2"; + version = "21.08.3"; src = fetchurl { - url = "${mirror}/stable/release-service/21.08.2/src/akonadi-mime-21.08.2.tar.xz"; - sha256 = "0fkv26zl92xijkibpxvbqcmip24qrq58lan3w9s642gqh972a6x3"; - name = "akonadi-mime-21.08.2.tar.xz"; + url = "${mirror}/stable/release-service/21.08.3/src/akonadi-mime-21.08.3.tar.xz"; + sha256 = "19dbgl9940wwsiyhysh1lm5ks9xb6a5m53p9qmdr5siid9karq64"; + name = "akonadi-mime-21.08.3.tar.xz"; }; }; akonadi-notes = { - version = "21.08.2"; + version = "21.08.3"; src = fetchurl { - url = "${mirror}/stable/release-service/21.08.2/src/akonadi-notes-21.08.2.tar.xz"; - sha256 = "0r19g9a0asqlw1qsh9vidbwpgbslfwqc8g577hdkhahfvg7hplmq"; - name = "akonadi-notes-21.08.2.tar.xz"; + url = "${mirror}/stable/release-service/21.08.3/src/akonadi-notes-21.08.3.tar.xz"; + sha256 = "0g1kdhj4qjl29x70dl4fl30f4r67s6ldpmqrf0xnj7zwz008r0fn"; + name = "akonadi-notes-21.08.3.tar.xz"; }; }; akonadi-search = { - version = "21.08.2"; + version = "21.08.3"; src = fetchurl { - url = "${mirror}/stable/release-service/21.08.2/src/akonadi-search-21.08.2.tar.xz"; - sha256 = "1a1pf9q93z0cv7v2fxksiw3vn5dylg0lgniv98z9p6zv0wijxhn5"; - name = "akonadi-search-21.08.2.tar.xz"; + url = "${mirror}/stable/release-service/21.08.3/src/akonadi-search-21.08.3.tar.xz"; + sha256 = "1fvfd1410zy9dbcjl21463wj91s5vly00l53ixaizylnjbj67lm0"; + name = "akonadi-search-21.08.3.tar.xz"; }; }; akonadiconsole = { - version = "21.08.2"; + version = "21.08.3"; src = fetchurl { - url = "${mirror}/stable/release-service/21.08.2/src/akonadiconsole-21.08.2.tar.xz"; - sha256 = "07vr4nwjzz6y1babwnhhidpv8pldx7vk2mq98midqji87xxh7r10"; - name = "akonadiconsole-21.08.2.tar.xz"; + url = "${mirror}/stable/release-service/21.08.3/src/akonadiconsole-21.08.3.tar.xz"; + sha256 = "1id1l6ifc1b8qsx16badhww33idk7c8qnn4lh3bg6mg1whmvy4k2"; + name = "akonadiconsole-21.08.3.tar.xz"; }; }; akregator = { - version = "21.08.2"; + version = "21.08.3"; src = fetchurl { - url = "${mirror}/stable/release-service/21.08.2/src/akregator-21.08.2.tar.xz"; - sha256 = "15qkkfrxiwcd1gz5skqj8sb8fkr1mkc51wc2chqr4jv6aa0lbf5r"; - name = "akregator-21.08.2.tar.xz"; + url = "${mirror}/stable/release-service/21.08.3/src/akregator-21.08.3.tar.xz"; + sha256 = "1jb2vd43pn7i1b7ylhm74q0jkk3hwbjxh6nc2hqpl9c0ic20arf2"; + name = "akregator-21.08.3.tar.xz"; }; }; analitza = { - version = "21.08.2"; + version = "21.08.3"; src = fetchurl { - url = "${mirror}/stable/release-service/21.08.2/src/analitza-21.08.2.tar.xz"; - sha256 = "1y4amcl3sjpxhlqzyjmnpycgv3jfdn4458zch9qzakvjxamq6m9c"; - name = "analitza-21.08.2.tar.xz"; + url = "${mirror}/stable/release-service/21.08.3/src/analitza-21.08.3.tar.xz"; + sha256 = "04g1l9q80j5rigz0667js35zjm3as0dpfkjhcm997bna1yb0d92z"; + name = "analitza-21.08.3.tar.xz"; 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+ url = "${mirror}/stable/release-service/21.08.3/src/libktorrent-21.08.3.tar.xz"; + sha256 = "1zjnnxhd0mv9if61rr28h35wban7sif61dmgc3wsixp4dz1xfrm6"; + name = "libktorrent-21.08.3.tar.xz"; }; }; lokalize = { - version = "21.08.2"; + version = "21.08.3"; src = fetchurl { - url = "${mirror}/stable/release-service/21.08.2/src/lokalize-21.08.2.tar.xz"; - sha256 = "01f48fsrv095vlgxfjfdlm70xwsw73x5zhqbm38szn6r404jcmjm"; - name = "lokalize-21.08.2.tar.xz"; + url = "${mirror}/stable/release-service/21.08.3/src/lokalize-21.08.3.tar.xz"; + sha256 = "0m084mayd9b0iwm4j5cckw22ix1mc4zcwxjfk0cdapm3g2ls1rzd"; + name = "lokalize-21.08.3.tar.xz"; }; }; lskat = { - version = "21.08.2"; + version = "21.08.3"; src = fetchurl { - url = "${mirror}/stable/release-service/21.08.2/src/lskat-21.08.2.tar.xz"; - sha256 = "03www1ix31ifmn6hvzymvhg157rdhahjfwvc9arns23zxpn1sq9p"; - name = "lskat-21.08.2.tar.xz"; + url = "${mirror}/stable/release-service/21.08.3/src/lskat-21.08.3.tar.xz"; + sha256 = "09l209fz82ibsxzg2f53lhbcsaq6zpwllpyklj2988xzn7h49cqg"; + name = "lskat-21.08.3.tar.xz"; }; }; mailcommon = { - version = "21.08.2"; + version = "21.08.3"; src = fetchurl { - url = "${mirror}/stable/release-service/21.08.2/src/mailcommon-21.08.2.tar.xz"; - sha256 = "0d0czxrf3i796pyrlifv4psq3hl4z2abhsqj1ns30xng45pzyrvz"; - name = "mailcommon-21.08.2.tar.xz"; + url = "${mirror}/stable/release-service/21.08.3/src/mailcommon-21.08.3.tar.xz"; + sha256 = "0vpbp88pl462d1j9f3ww22zybrmz92zx3b5cj4gsl7gmb7ijwb19"; + name = "mailcommon-21.08.3.tar.xz"; }; }; mailimporter = { - version = "21.08.2"; + version = "21.08.3"; src = fetchurl { - url = "${mirror}/stable/release-service/21.08.2/src/mailimporter-21.08.2.tar.xz"; - sha256 = "0vd0bghszwr1wh4x2ygd7flg0kypb8m92gvh0q800gdgnqj87lw7"; - name = "mailimporter-21.08.2.tar.xz"; + url = "${mirror}/stable/release-service/21.08.3/src/mailimporter-21.08.3.tar.xz"; + sha256 = "00vm445i5c7vjfmbfgzdj3xildqbnlzpi5i16w4c47wyg5kvpj2c"; + name = "mailimporter-21.08.3.tar.xz"; }; }; marble = { - version = "21.08.2"; + version = "21.08.3"; src = fetchurl { - url = "${mirror}/stable/release-service/21.08.2/src/marble-21.08.2.tar.xz"; - sha256 = "1l8dwj0kyq8r3cap2sjsr4blbz591l6cxhglkhxwds901igacmxa"; - name = "marble-21.08.2.tar.xz"; + url = "${mirror}/stable/release-service/21.08.3/src/marble-21.08.3.tar.xz"; + sha256 = "0bapnmm2x0ihms5gd12brqb2yx7g5h4c8ky70l1czd4a8d95ha0a"; + name = "marble-21.08.3.tar.xz"; }; }; markdownpart = { - version = "21.08.2"; + version = "21.08.3"; src = fetchurl { - url = "${mirror}/stable/release-service/21.08.2/src/markdownpart-21.08.2.tar.xz"; - sha256 = "0vx2d31d9c9ipwkbnlrjhzkaj97a7vz6vigbbkvw4cyaqhq6zkqp"; - name = "markdownpart-21.08.2.tar.xz"; + url = "${mirror}/stable/release-service/21.08.3/src/markdownpart-21.08.3.tar.xz"; + sha256 = "1cqkwvs1ssg203fkaiibcmqjm2viaq3iq880cjlkx9irh0bv9q9h"; + name = "markdownpart-21.08.3.tar.xz"; }; }; mbox-importer = { - version = "21.08.2"; + version = "21.08.3"; src = fetchurl { - url = "${mirror}/stable/release-service/21.08.2/src/mbox-importer-21.08.2.tar.xz"; - sha256 = "1bf4awkrivx209rnwflxrqdxzvj8mzlgzis79hn9n654qy6ar2d5"; - name = "mbox-importer-21.08.2.tar.xz"; + url = "${mirror}/stable/release-service/21.08.3/src/mbox-importer-21.08.3.tar.xz"; + sha256 = "19i5a1rax3xfkcz0hv0vqq9iavggqrliwpqsqnx6zvwjzgjrvsif"; + name = "mbox-importer-21.08.3.tar.xz"; }; }; messagelib = { - version = "21.08.2"; + version = "21.08.3"; src = fetchurl { - url = "${mirror}/stable/release-service/21.08.2/src/messagelib-21.08.2.tar.xz"; - sha256 = "0gsxik4ib72xhw948h257m17w4k49sa3ymbg87n0q8nd6gykxyhr"; - name = "messagelib-21.08.2.tar.xz"; + url = "${mirror}/stable/release-service/21.08.3/src/messagelib-21.08.3.tar.xz"; + sha256 = "0q9mligkkvbwb92ghv5g66rkn0vpbw2xfbgsdnn4jajjxsixipg7"; + name = "messagelib-21.08.3.tar.xz"; }; }; minuet = { - version = "21.08.2"; + version = "21.08.3"; src = fetchurl { - url = "${mirror}/stable/release-service/21.08.2/src/minuet-21.08.2.tar.xz"; - sha256 = "13i37xw2aarmqi25m1r68z9zjwqf9nx8bxlflb0wxghzf3pgrp4v"; - name = "minuet-21.08.2.tar.xz"; + url = "${mirror}/stable/release-service/21.08.3/src/minuet-21.08.3.tar.xz"; + sha256 = "1g2chj23dw9p2lgf094mn9cd26wnhwgslwdwzwax2a23p42j7kb8"; + name = "minuet-21.08.3.tar.xz"; }; }; okular = { - version = "21.08.2"; + version = "21.08.3"; src = fetchurl { - url = "${mirror}/stable/release-service/21.08.2/src/okular-21.08.2.tar.xz"; - sha256 = "0y3n340fbhsgmmrq4vz2p9682xzs7hsvvna8ffh4r15wgl1qdb9q"; - name = "okular-21.08.2.tar.xz"; + url = "${mirror}/stable/release-service/21.08.3/src/okular-21.08.3.tar.xz"; + sha256 = "00ghh7z39904d5x5sa39adkavkhl09hzib6fpwjn14f6sz925f9r"; + name = "okular-21.08.3.tar.xz"; }; }; palapeli = { - version = "21.08.2"; + version = "21.08.3"; src = fetchurl { - url = "${mirror}/stable/release-service/21.08.2/src/palapeli-21.08.2.tar.xz"; - sha256 = "0pl6hi0c5fa6zs3gdicm1s7rmzzdjjvrm8s8ds6f4ghq6dmlknqj"; - name = "palapeli-21.08.2.tar.xz"; + url = "${mirror}/stable/release-service/21.08.3/src/palapeli-21.08.3.tar.xz"; + sha256 = "084nvavgzkmrv77rsg2zf2vykfjwwsvn2i2y24jsh63hs7i5xqhb"; + name = "palapeli-21.08.3.tar.xz"; }; }; parley = { - version = "21.08.2"; + version = "21.08.3"; src = fetchurl { - url = "${mirror}/stable/release-service/21.08.2/src/parley-21.08.2.tar.xz"; - sha256 = "0lykvjaxfj6blgjkmipvlw9531npz46d6jwq6w5wxvk6f1b2cgbh"; - name = "parley-21.08.2.tar.xz"; + url = "${mirror}/stable/release-service/21.08.3/src/parley-21.08.3.tar.xz"; + sha256 = "0wyv5qx4g0941kg870qb9rc9npdw39ggvndjk7ywaad9nkvdj73g"; + name = "parley-21.08.3.tar.xz"; }; }; partitionmanager = { - version = "21.08.2"; + version = "21.08.3"; src = fetchurl { - url = "${mirror}/stable/release-service/21.08.2/src/partitionmanager-21.08.2.tar.xz"; - sha256 = "1fa90mnby2kf5a85wjz7xvb999gh5c2yn0j3g562zndqznqhcpvx"; - name = "partitionmanager-21.08.2.tar.xz"; + url = "${mirror}/stable/release-service/21.08.3/src/partitionmanager-21.08.3.tar.xz"; + sha256 = "0im782ggbnkyzcczxx3mv5qi4nlqmcyhwkbf0mzh8cz56qkfvzhr"; + name = "partitionmanager-21.08.3.tar.xz"; }; }; picmi = { - version = "21.08.2"; + version = "21.08.3"; src = fetchurl { - url = "${mirror}/stable/release-service/21.08.2/src/picmi-21.08.2.tar.xz"; - sha256 = "0qvz4fl4jb256rwmaw0bszr3x2b5jd8priilc3jr33v393f3pd6q"; - name = "picmi-21.08.2.tar.xz"; + url = "${mirror}/stable/release-service/21.08.3/src/picmi-21.08.3.tar.xz"; + sha256 = "0h208sy2r2jzy7a6rmla349d8lydvfvdb2vahdfxrqql0m15s07s"; + name = "picmi-21.08.3.tar.xz"; }; }; pim-data-exporter = { - version = "21.08.2"; + version = "21.08.3"; src = fetchurl { - url = "${mirror}/stable/release-service/21.08.2/src/pim-data-exporter-21.08.2.tar.xz"; - sha256 = "0li96fkwkdg4ziyv4n56vn49wav4kilf7lqb4s9xwj8h44kjpa5f"; - name = "pim-data-exporter-21.08.2.tar.xz"; + url = "${mirror}/stable/release-service/21.08.3/src/pim-data-exporter-21.08.3.tar.xz"; + sha256 = "0l6gkwh6pxp6px50n8i0374by3n7nv0gjkb2qy0s4hsvfz8nwlwk"; + name = "pim-data-exporter-21.08.3.tar.xz"; }; }; pim-sieve-editor = { - version = "21.08.2"; + version = "21.08.3"; src = fetchurl { - url = "${mirror}/stable/release-service/21.08.2/src/pim-sieve-editor-21.08.2.tar.xz"; - sha256 = "173c595djmz3wyzl9dl3br8m3k0940ncdyjf8rjfgrh79y86bh7m"; - name = "pim-sieve-editor-21.08.2.tar.xz"; + url = "${mirror}/stable/release-service/21.08.3/src/pim-sieve-editor-21.08.3.tar.xz"; + sha256 = "1z01c0wsxzl69kr0cxfq23l56dgi0xfjak5qbpfd9p4b2kr095s7"; + name = "pim-sieve-editor-21.08.3.tar.xz"; }; }; pimcommon = { - version = "21.08.2"; + version = "21.08.3"; src = fetchurl { - url = "${mirror}/stable/release-service/21.08.2/src/pimcommon-21.08.2.tar.xz"; - sha256 = "074pbxprzx8hd6fikjvx8hn9g9135swzhj1f5zvfvhyvlpyj90wg"; - name = "pimcommon-21.08.2.tar.xz"; + url = "${mirror}/stable/release-service/21.08.3/src/pimcommon-21.08.3.tar.xz"; + sha256 = "1hj49spfjwqrwh7h86kw7ydcx13rknagj54mhcn60kawz639533l"; + name = "pimcommon-21.08.3.tar.xz"; }; }; poxml = { - version = "21.08.2"; + version = "21.08.3"; src = fetchurl { - url = "${mirror}/stable/release-service/21.08.2/src/poxml-21.08.2.tar.xz"; - sha256 = "1h7y4y1n3xcpgrkabik21ilck5dmq6p3qxs3xm9vzq1jxpb9izyf"; - name = "poxml-21.08.2.tar.xz"; + url = "${mirror}/stable/release-service/21.08.3/src/poxml-21.08.3.tar.xz"; + sha256 = "0yrn2dbdhm3ap55w401ma8z64b7pgs57lzgakzkdpcf69bww9xkw"; + name = "poxml-21.08.3.tar.xz"; }; }; print-manager = { - version = "21.08.2"; + version = "21.08.3"; src = fetchurl { - url = "${mirror}/stable/release-service/21.08.2/src/print-manager-21.08.2.tar.xz"; - sha256 = "0g2y2i7iysi6i397gd9fpqpk9cha7z4b2wz6shcqp0jyvvwl1pd3"; - name = "print-manager-21.08.2.tar.xz"; + url = "${mirror}/stable/release-service/21.08.3/src/print-manager-21.08.3.tar.xz"; + sha256 = "0dmd1wp6c5f58fssnyc977d29gqcr6pmzplvq5pj97xq0i8fq15z"; + name = "print-manager-21.08.3.tar.xz"; }; }; rocs = { - version = "21.08.2"; + version = "21.08.3"; src = fetchurl { - url = "${mirror}/stable/release-service/21.08.2/src/rocs-21.08.2.tar.xz"; - sha256 = "0cvgi42w1a7zd6bzazly9w2azbyp9gzvkyx5wlff5z99nk6v3mp0"; - name = "rocs-21.08.2.tar.xz"; + url = "${mirror}/stable/release-service/21.08.3/src/rocs-21.08.3.tar.xz"; + sha256 = "0mdn58wbv5rhljp7ai0282h5z5j7m9yly6q9s6c8vm5kaxhbwg58"; + name = "rocs-21.08.3.tar.xz"; }; }; signon-kwallet-extension = { - version = "21.08.2"; + version = "21.08.3"; src = fetchurl { - url = "${mirror}/stable/release-service/21.08.2/src/signon-kwallet-extension-21.08.2.tar.xz"; - sha256 = "19jp6h9xqhlyvddgyg9jz74by0pcxqm920c5h8vln5vkkcgsdwws"; - name = "signon-kwallet-extension-21.08.2.tar.xz"; + url = "${mirror}/stable/release-service/21.08.3/src/signon-kwallet-extension-21.08.3.tar.xz"; + sha256 = "1m3wyyndlwk4snjzz45j377hz5plx01bl69y39aw1y53rsx0baln"; + name = "signon-kwallet-extension-21.08.3.tar.xz"; }; }; skanlite = { - version = "21.08.2"; + version = "21.08.3"; src = fetchurl { - url = "${mirror}/stable/release-service/21.08.2/src/skanlite-21.08.2.tar.xz"; - sha256 = "1zwrb7j7x234vbb57p8gzbqz2mfr1n2i84yjf16jrsv1fm53z9md"; - name = "skanlite-21.08.2.tar.xz"; + url = "${mirror}/stable/release-service/21.08.3/src/skanlite-21.08.3.tar.xz"; + sha256 = "1llvq89vdsypbak8lmhnyfr61s72c4lra1yypxmgw0hwqvwqzyjk"; + name = "skanlite-21.08.3.tar.xz"; }; }; spectacle = { - version = "21.08.2"; + version = "21.08.3"; src = fetchurl { - url = "${mirror}/stable/release-service/21.08.2/src/spectacle-21.08.2.tar.xz"; - sha256 = "0m59cnfqkm379i6ayj1g5flszqs26dmnwl79324d1j6bxk24mjrh"; - name = "spectacle-21.08.2.tar.xz"; + url = "${mirror}/stable/release-service/21.08.3/src/spectacle-21.08.3.tar.xz"; + sha256 = "0l1p565y2d04fw9mz1ns11bwc9z5apkjd4llgdihz4qwq5j0ri5y"; + name = "spectacle-21.08.3.tar.xz"; }; }; step = { - version = "21.08.2"; + version = "21.08.3"; src = fetchurl { - url = "${mirror}/stable/release-service/21.08.2/src/step-21.08.2.tar.xz"; - sha256 = "15l11s39hw847kd37fhq6kp3ajbsxidkfpp2ryb9dfh595lncg2r"; - name = "step-21.08.2.tar.xz"; + url = "${mirror}/stable/release-service/21.08.3/src/step-21.08.3.tar.xz"; + sha256 = "1pznz6hxj1h0vcsidsyjm9zgzx4pla47yckykc3mxb9biraalhi5"; + name = "step-21.08.3.tar.xz"; }; }; svgpart = { - version = "21.08.2"; + version = "21.08.3"; src = fetchurl { - url = "${mirror}/stable/release-service/21.08.2/src/svgpart-21.08.2.tar.xz"; - sha256 = "14xgwdvpcvgw0jj4gy3175ah38x9f8lhknqbw5bczvm9cy8j7qfw"; - name = "svgpart-21.08.2.tar.xz"; + url = "${mirror}/stable/release-service/21.08.3/src/svgpart-21.08.3.tar.xz"; + sha256 = "1zpzmhgvxlyalq4nn446k7plz5fw2pl4r7zv7q3hjrzla1wgcqx8"; + name = "svgpart-21.08.3.tar.xz"; }; }; sweeper = { - version = "21.08.2"; + version = "21.08.3"; src = fetchurl { - url = "${mirror}/stable/release-service/21.08.2/src/sweeper-21.08.2.tar.xz"; - sha256 = "1yvcfdhapml1vzqns67v6j2c39g752f8czxs7bnczi69fq1ksh0b"; - name = "sweeper-21.08.2.tar.xz"; + url = "${mirror}/stable/release-service/21.08.3/src/sweeper-21.08.3.tar.xz"; + sha256 = "0sa8dfx26m9ry3pvqryx41w51l76r8l2xh16b783ixqln7x08z5j"; + name = "sweeper-21.08.3.tar.xz"; }; }; umbrello = { - version = "21.08.2"; + version = "21.08.3"; src = fetchurl { - url = "${mirror}/stable/release-service/21.08.2/src/umbrello-21.08.2.tar.xz"; - sha256 = "1xiz006ppgss6rxg7lndgnrbcdbm0iq1hjly3rjn943ff11wq5yr"; - name = "umbrello-21.08.2.tar.xz"; + url = "${mirror}/stable/release-service/21.08.3/src/umbrello-21.08.3.tar.xz"; + sha256 = "025qds7nahm6kpi94j4blk8xpv6vh2alrbgwby20vvn3h678z26x"; + name = "umbrello-21.08.3.tar.xz"; }; }; yakuake = { - version = "21.08.2"; + version = "21.08.3"; src = fetchurl { - url = "${mirror}/stable/release-service/21.08.2/src/yakuake-21.08.2.tar.xz"; - sha256 = "1d8dh10jkpm4pm8fh1bmkdwvv59gk0fg6dr3gahlspnh4hhzy4hg"; - name = "yakuake-21.08.2.tar.xz"; + url = "${mirror}/stable/release-service/21.08.3/src/yakuake-21.08.3.tar.xz"; + sha256 = "1za4vhnr495dadrarqqanavmyn1mmzm3y8jx05cpbjyqmlm353dk"; + name = "yakuake-21.08.3.tar.xz"; }; }; zeroconf-ioslave = { - version = "21.08.2"; + version = "21.08.3"; src = fetchurl { - url = "${mirror}/stable/release-service/21.08.2/src/zeroconf-ioslave-21.08.2.tar.xz"; - sha256 = "0xgm4y29iklal5kd5z76jdw6wgw0mg9xn0f0d07zyshv5hjgllv6"; - name = "zeroconf-ioslave-21.08.2.tar.xz"; + url = "${mirror}/stable/release-service/21.08.3/src/zeroconf-ioslave-21.08.3.tar.xz"; + sha256 = "1dkig267znwyw03fq6mpdb5g1xnkhr0brnvxskjm44a4d5ipbv2g"; + name = "zeroconf-ioslave-21.08.3.tar.xz"; }; }; } diff --git a/pkgs/applications/misc/abook/default.nix b/pkgs/applications/misc/abook/default.nix index 62cba4a5b736..de463cfd6665 100644 --- a/pkgs/applications/misc/abook/default.nix +++ b/pkgs/applications/misc/abook/default.nix @@ -1,19 +1,20 @@ { lib, stdenv, fetchurl, fetchpatch, pkg-config, ncurses, readline, autoreconfHook }: stdenv.mkDerivation rec { - name = "abook-0.6.1"; + pname = "abook"; + version = "0.6.1"; src = fetchurl { - url = "http://abook.sourceforge.net/devel/${name}.tar.gz"; + url = "http://abook.sourceforge.net/devel/abook-${version}.tar.gz"; sha256 = "1yf0ifyjhq2r003pnpn92mn0924bn9yxjifxxj2ldcsgd7w0vagh"; }; patches = [ (fetchpatch { - url = "https://projects.archlinux.org/svntogit/packages.git/plain/trunk/gcc5.patch?h=packages/abook"; - name = "gcc5.patch"; - sha256 = "13n3qd6yy45i5n8ppjn9hj6y63ymjrq96280683xk7f7rjavw5nn"; - }) + url = "https://projects.archlinux.org/svntogit/packages.git/plain/trunk/gcc5.patch?h=packages/abook"; + name = "gcc5.patch"; + sha256 = "13n3qd6yy45i5n8ppjn9hj6y63ymjrq96280683xk7f7rjavw5nn"; + }) ]; nativeBuildInputs = [ pkg-config autoreconfHook ]; diff --git a/pkgs/applications/misc/adobe-reader/default.nix b/pkgs/applications/misc/adobe-reader/default.nix index 8f1b3f5ca88f..2bce30365f08 100644 --- a/pkgs/applications/misc/adobe-reader/default.nix +++ b/pkgs/applications/misc/adobe-reader/default.nix @@ -1,13 +1,23 @@ -{ lib, stdenv, fetchurl, libX11, cups, zlib, libxml2, pango, atk, gtk2, glib -, gdk-pixbuf, gdk-pixbuf-xlib }: +{ lib +, stdenv +, fetchurl +, libX11 +, cups +, zlib +, libxml2 +, pango +, atk +, gtk2 +, glib +, gdk-pixbuf +, gdk-pixbuf-xlib +}: -assert stdenv.hostPlatform.system == "i686-linux"; - -let version = "9.5.5"; in - -stdenv.mkDerivation { - name = "adobe-reader-${version}-1"; +stdenv.mkDerivation rec { + pname = "adobe-reader"; + version = "9.5.5"; + # TODO: convert to phases builder = ./builder.sh; src = fetchurl { @@ -16,11 +26,8 @@ stdenv.mkDerivation { }; # !!! Adobe Reader contains copies of OpenSSL, libcurl, and libicu. - # We should probably remove those and use the regular Nixpkgs - # versions. - - libPath = lib.makeLibraryPath - [ stdenv.cc.cc libX11 zlib libxml2 cups pango atk gtk2 glib gdk-pixbuf gdk-pixbuf-xlib ]; + # We should probably remove those and use the regular Nixpkgs versions. + libPath = lib.makeLibraryPath [ stdenv.cc.cc libX11 zlib libxml2 cups pango atk gtk2 glib gdk-pixbuf gdk-pixbuf-xlib ]; passthru.mozillaPlugin = "/libexec/adobe-reader/Browser/intellinux"; @@ -32,5 +39,6 @@ stdenv.mkDerivation { "Numerous unresolved vulnerabilities" "See: https://www.cvedetails.com/product/497/Adobe-Acrobat-Reader.html?vendor_id=53" ]; + platforms = [ "i686-linux" ]; }; } diff --git a/pkgs/applications/misc/anup/default.nix b/pkgs/applications/misc/anup/default.nix index 9c99c84eabee..3eed2a7501c3 100644 --- a/pkgs/applications/misc/anup/default.nix +++ b/pkgs/applications/misc/anup/default.nix @@ -1,4 +1,4 @@ -{ lib, rustPlatform, fetchFromGitHub, sqlite, xdg-utils}: +{ lib, stdenv, rustPlatform, fetchFromGitHub, Security, sqlite, xdg-utils}: rustPlatform.buildRustPackage rec { pname = "anup"; @@ -14,6 +14,8 @@ rustPlatform.buildRustPackage rec { buildInputs = [ sqlite xdg-utils + ] ++ lib.optionals stdenv.isDarwin [ + Security ]; cargoSha256 = "sha256-1TA2HDHKA3twFtlAWaC2zcRzS8TJwcbBt1OTQ3hC3qM="; diff --git a/pkgs/applications/misc/anytype/default.nix b/pkgs/applications/misc/anytype/default.nix index c7428387d2c8..0632f2b15a00 100644 --- a/pkgs/applications/misc/anytype/default.nix +++ b/pkgs/applications/misc/anytype/default.nix @@ -2,13 +2,13 @@ let pname = "anytype"; - version = "0.20.9"; + version = "0.21.1"; name = "Anytype-${version}"; nameExecutable = pname; src = fetchurl { url = "https://at9412003.fra1.digitaloceanspaces.com/Anytype-${version}.AppImage"; name = "Anytype-${version}.AppImage"; - sha256 = "sha256-dm3bdKbUHI0FFcyYeYd2XSuZuoPsUhk4KcEwzPHiHM8="; + sha256 = "sha256-5QsbB48g11TyfWCbR7Sz2AETEwdyG+bSJQNGRHrIueE="; }; appimageContents = appimageTools.extractType2 { inherit name src; }; in diff --git a/pkgs/applications/misc/appeditor/default.nix b/pkgs/applications/misc/appeditor/default.nix index f8e709e423fd..0643e33885d0 100644 --- a/pkgs/applications/misc/appeditor/default.nix +++ b/pkgs/applications/misc/appeditor/default.nix @@ -59,5 +59,6 @@ stdenv.mkDerivation rec { maintainers = with maintainers; [ xiorcale ] ++ teams.pantheon.members; platforms = platforms.linux; license = licenses.gpl3Plus; + mainProgram = "com.github.donadigo.appeditor"; }; } diff --git a/pkgs/applications/misc/audio/sox/default.nix b/pkgs/applications/misc/audio/sox/default.nix index 9baf2d4d2f24..29a932f40d58 100644 --- a/pkgs/applications/misc/audio/sox/default.nix +++ b/pkgs/applications/misc/audio/sox/default.nix @@ -1,54 +1,72 @@ -{ config, lib, stdenv, fetchurl, pkg-config, CoreAudio -, enableAlsa ? true, alsa-lib ? null -, enableLibao ? true, libao ? null -, enableLame ? config.sox.enableLame or false, lame ? null -, enableLibmad ? true, libmad ? null -, enableLibogg ? true, libogg ? null, libvorbis ? null -, enableOpusfile ? true, opusfile ? null -, enableFLAC ? true, flac ? null -, enablePNG ? true, libpng ? null -, enableLibsndfile ? true, libsndfile ? null -, enableWavpack ? true, wavpack ? null -# amrnb and amrwb are unfree, disabled by default -, enableAMR ? false, amrnb ? null, amrwb ? null -, enableLibpulseaudio ? true, libpulseaudio ? null +{ config +, lib +, stdenv +, fetchurl +, pkg-config +, CoreAudio +, enableAlsa ? true +, alsa-lib +, enableLibao ? true +, libao +, enableLame ? config.sox.enableLame or false +, lame +, enableLibmad ? true +, libmad +, enableLibogg ? true +, libogg +, libvorbis +, enableOpusfile ? true +, opusfile +, enableFLAC ? true +, flac +, enablePNG ? true +, libpng +, enableLibsndfile ? true +, libsndfile +, enableWavpack ? true +, wavpack + # amrnb and amrwb are unfree, disabled by default +, enableAMR ? false +, amrnb +, amrwb +, enableLibpulseaudio ? stdenv.isLinux +, libpulseaudio }: -with lib; - stdenv.mkDerivation rec { - name = "sox-14.4.2"; + pname = "sox"; + version = "14.4.2"; src = fetchurl { - url = "mirror://sourceforge/sox/${name}.tar.gz"; + url = "mirror://sourceforge/sox/sox-${version}.tar.gz"; sha256 = "0v2znlxkxxcd3f48hf3dx9pq7i6fdhb62kgj7wv8xggz8f35jpxl"; }; # configure.ac uses pkg-config only to locate libopusfile - nativeBuildInputs = optional enableOpusfile pkg-config; + nativeBuildInputs = lib.optional enableOpusfile pkg-config; patches = [ ./0001-musl-rewind-pipe-workaround.patch ]; buildInputs = - optional (enableAlsa && stdenv.isLinux) alsa-lib ++ - optional enableLibao libao ++ - optional enableLame lame ++ - optional enableLibmad libmad ++ - optionals enableLibogg [ libogg libvorbis ] ++ - optional enableOpusfile opusfile ++ - optional enableFLAC flac ++ - optional enablePNG libpng ++ - optional enableLibsndfile libsndfile ++ - optional enableWavpack wavpack ++ - optionals enableAMR [ amrnb amrwb ] ++ - optional enableLibpulseaudio libpulseaudio ++ - optional (stdenv.isDarwin) CoreAudio; + lib.optional (enableAlsa && stdenv.isLinux) alsa-lib + ++ lib.optional enableLibao libao + ++ lib.optional enableLame lame + ++ lib.optional enableLibmad libmad + ++ lib.optionals enableLibogg [ libogg libvorbis ] + ++ lib.optional enableOpusfile opusfile + ++ lib.optional enableFLAC flac + ++ lib.optional enablePNG libpng + ++ lib.optional enableLibsndfile libsndfile + ++ lib.optional enableWavpack wavpack + ++ lib.optionals enableAMR [ amrnb amrwb ] + ++ lib.optional enableLibpulseaudio libpulseaudio + ++ lib.optional stdenv.isDarwin CoreAudio; - meta = { + meta = with lib; { description = "Sample Rate Converter for audio"; homepage = "http://sox.sourceforge.net/"; - maintainers = [ lib.maintainers.marcweber ]; - license = if enableAMR then lib.licenses.unfree else lib.licenses.gpl2Plus; - platforms = lib.platforms.linux ++ lib.platforms.darwin; + maintainers = with maintainers; [ marcweber ]; + license = if enableAMR then licenses.unfree else licenses.gpl2Plus; + platforms = platforms.unix; }; } diff --git a/pkgs/applications/misc/audio/wavesurfer/default.nix b/pkgs/applications/misc/audio/wavesurfer/default.nix index 9c8a99a59347..99cdc9ade21b 100644 --- a/pkgs/applications/misc/audio/wavesurfer/default.nix +++ b/pkgs/applications/misc/audio/wavesurfer/default.nix @@ -1,10 +1,11 @@ { lib, stdenv, fetchurl, snack, tcl, tk, makeWrapper }: -stdenv.mkDerivation { - name = "wavesurfer-1.8.5"; +stdenv.mkDerivation rec { + pname = "wavesurfer"; + version = "1.8.5"; src = fetchurl { - url = "https://www.speech.kth.se/wavesurfer/wavesurfer-1.8.5.tar.gz"; + url = "https://www.speech.kth.se/wavesurfer/wavesurfer-${version}.tar.gz"; sha256 = "1yx9s1j47cq0v40cwq2gn7bdizpw46l95ba4zl9z4gg31mfvm807"; }; diff --git a/pkgs/applications/misc/audio/wavrsocvt/default.nix b/pkgs/applications/misc/audio/wavrsocvt/default.nix index 6b09a2e38d8c..10aac715b48a 100644 --- a/pkgs/applications/misc/audio/wavrsocvt/default.nix +++ b/pkgs/applications/misc/audio/wavrsocvt/default.nix @@ -1,7 +1,8 @@ { lib, stdenv, fetchurl }: stdenv.mkDerivation { - name = "wavrsocvt-1.0.2.0"; + pname = "wavrsocvt"; + version = "1.0.2.0"; src = fetchurl { url = "http://bricxcc.sourceforge.net/wavrsocvt.tgz"; @@ -10,23 +11,23 @@ stdenv.mkDerivation { unpackPhase = '' tar -zxf $src - ''; + ''; installPhase = '' mkdir -p $out/bin cp wavrsocvt $out/bin - ''; + ''; meta = with lib; { description = "Convert .wav files into sound files for Lego NXT brick"; longDescription = '' - wavrsocvt is a command-line utility which can be used from a - terminal window or script to convert .wav files into sound - files for the NXT brick (.rso files). It can also convert the - other direction (i.e., .rso -> .wav). It can produce RSO files - with a sample rate between 2000 and 16000 (the min/max range of - supported sample rates in the standard NXT firmware). - You can then upload these with e.g. nxt-python. + wavrsocvt is a command-line utility which can be used from a + terminal window or script to convert .wav files into sound + files for the NXT brick (.rso files). It can also convert the + other direction (i.e., .rso -> .wav). It can produce RSO files + with a sample rate between 2000 and 16000 (the min/max range of + supported sample rates in the standard NXT firmware). + You can then upload these with e.g. nxt-python. ''; homepage = "http://bricxcc.sourceforge.net/"; license = licenses.mpl11; diff --git a/pkgs/applications/misc/avrdudess/default.nix b/pkgs/applications/misc/avrdudess/default.nix index 61cab2b6a2a4..0a42e6f5e2cd 100644 --- a/pkgs/applications/misc/avrdudess/default.nix +++ b/pkgs/applications/misc/avrdudess/default.nix @@ -1,7 +1,8 @@ { lib, stdenv, runtimeShell, fetchurl, unzip, mono, avrdude, gtk2, xdg-utils }: stdenv.mkDerivation { - name = "avrdudess-2.2.20140102"; + pname = "avrdudess"; + version = "2.2.20140102"; src = fetchurl { url = "http://blog.zakkemble.co.uk/download/avrdudess_20140102.zip"; diff --git a/pkgs/applications/misc/azuredatastudio/default.nix b/pkgs/applications/misc/azuredatastudio/default.nix index fca1ad12fd1c..f7e39396602e 100644 --- a/pkgs/applications/misc/azuredatastudio/default.nix +++ b/pkgs/applications/misc/azuredatastudio/default.nix @@ -1,9 +1,12 @@ { stdenv , lib , fetchurl +, copyDesktopItems +, makeDesktopItem , makeWrapper , libuuid , libunwind +, libxkbcommon , icu , openssl , zlib @@ -13,23 +16,69 @@ , gnutar , atomEnv , libkrb5 +, libdrm +, mesa +, xorg }: # from justinwoo/azuredatastudio-nix # https://github.com/justinwoo/azuredatastudio-nix/blob/537c48aa3981cd1a82d5d6e508ab7e7393b3d7c8/default.nix +let + desktopItem = makeDesktopItem { + name = "azuredatastudio"; + desktopName = "Azure Data Studio"; + comment = "Data Management Tool that enables you to work with SQL Server, Azure SQL DB and SQL DW from Windows, macOS and Linux."; + genericName = "Text Editor"; + exec = "azuredatastudio --no-sandbox --unity-launch %F"; + icon = "azuredatastudio"; + startupNotify = "true"; + categories = "Utility;TextEditor;Development;IDE;"; + mimeType = "text/plain;inode/directory;application/x-azuredatastudio-workspace;"; + extraEntries = '' + StartupWMClass=azuredatastudio + Actions=new-empty-window; + Keywords=azuredatastudio; + + [Desktop Action new-empty-window] + Name=New Empty Window + Exec=azuredatastudio --no-sandbox --new-window %F + Icon=azuredatastudio + ''; + }; + + urlHandlerDesktopItem = makeDesktopItem { + name = "azuredatastudio-url-handler"; + desktopName = "Azure Data Studio - URL Handler"; + comment = "Azure Data Studio"; + genericName = "Text Editor"; + exec = "azuredatastudio --no-sandbox --open-url %U"; + icon = "azuredatastudio"; + startupNotify = "true"; + categories = "Utility;TextEditor;Development;IDE;"; + mimeType = "x-scheme-handler/azuredatastudio;"; + extraEntries = '' + NoDisplay=true + Keywords=azuredatastudio; + ''; + }; +in stdenv.mkDerivation rec { pname = "azuredatastudio"; - version = "1.17.1"; + version = "1.33.0"; + + desktopItems = [ desktopItem urlHandlerDesktopItem ]; src = fetchurl { - url = "https://azuredatastudiobuilds.blob.core.windows.net/releases/${version}/azuredatastudio-linux-${version}.tar.gz"; - sha256 = "0px9n9vyjvyddca4x7d0zindd0dim7350vkjg5dd0506fm8dc38k"; + name = "${pname}-${version}.tar.gz"; + url = "https://azuredatastudio-update.azurewebsites.net/${version}/linux-x64/stable"; + sha256 = "0593xs44ryfyxy0hc31hdbj706q16h58jb0qyfyncn7ngybm3423"; }; nativeBuildInputs = [ makeWrapper + copyDesktopItems ]; buildInputs = [ @@ -38,7 +87,14 @@ stdenv.mkDerivation rec { at-spi2-atk ]; - dontInstall = true; + installPhase = '' + runHook preInstall + + mkdir -p $out/share/pixmaps + cp ${targetPath}/resources/app/resources/linux/code.png $out/share/pixmaps/azuredatastudio.png + + runHook postInstall + ''; # change this to azuredatastudio-insiders for insiders releases edition = "azuredatastudio"; @@ -60,7 +116,7 @@ stdenv.mkDerivation rec { ]; # this will most likely need to be updated when azuredatastudio's version changes - sqltoolsservicePath = "${targetPath}/resources/app/extensions/mssql/sqltoolsservice/Linux/2.0.0-release.56"; + sqltoolsservicePath = "${targetPath}/resources/app/extensions/mssql/sqltoolsservice/Linux/3.0.0-release.139"; rpath = lib.concatStringsSep ":" [ atomEnv.libPath @@ -71,6 +127,10 @@ stdenv.mkDerivation rec { at-spi2-atk stdenv.cc.cc.lib libkrb5 + libdrm + libxkbcommon + mesa + xorg.libxshmfence ] ) targetPath @@ -111,5 +171,6 @@ stdenv.mkDerivation rec { description = "A data management tool that enables working with SQL Server, Azure SQL DB and SQL DW"; homepage = "https://docs.microsoft.com/en-us/sql/azure-data-studio/download-azure-data-studio"; license = lib.licenses.unfreeRedistributable; + platforms = [ "x86_64-linux" ]; }; } diff --git a/pkgs/applications/misc/barrier/default.nix b/pkgs/applications/misc/barrier/default.nix index b9dbcf529be1..63a04d181156 100644 --- a/pkgs/applications/misc/barrier/default.nix +++ b/pkgs/applications/misc/barrier/default.nix @@ -5,13 +5,13 @@ mkDerivation rec { pname = "barrier"; - version = "2.3.3"; + version = "2.4.0"; src = fetchFromGitHub { owner = "debauchee"; repo = pname; rev = "v${version}"; - sha256 = "11vqkzpcjiv3pq6ps022223j6skgm1d23dj18n4a5nsf53wsvvp4"; + sha256 = "sha256-2tHqLF3zS3C4UnOVIZfpcuzaemC9++nC7lXgFnFSfKU="; fetchSubmodules = true; }; diff --git a/pkgs/applications/misc/bemenu/default.nix b/pkgs/applications/misc/bemenu/default.nix index 123d839341d6..d230606a3c38 100644 --- a/pkgs/applications/misc/bemenu/default.nix +++ b/pkgs/applications/misc/bemenu/default.nix @@ -1,4 +1,4 @@ -{ stdenv, lib, fetchFromGitHub, cairo, libxkbcommon +{ stdenv, lib, fetchFromGitHub, fetchpatch, cairo, libxkbcommon , pango, fribidi, harfbuzz, pcre, pkg-config , ncursesSupport ? true, ncurses ? null , waylandSupport ? true, wayland ? null, wayland-protocols ? null @@ -20,6 +20,15 @@ stdenv.mkDerivation rec { sha256 = "sha256-U4IMfDvQ0rfEJhE3Uext2c/Cs0mjy1tw+k8uk441Ag8="; }; + patches = [ + # Pull upstream fix for build against ncurses-6.3 + (fetchpatch { + name = "ncurses-6.3.patch"; + url = "https://github.com/Cloudef/bemenu/commit/d31164db756989579468946aba62969e42c7ed28.patch"; + sha256 = "sha256-oyndQI7SaR8cK0IO5wIIxMpmakhfUzwUqLIKRbPkEdw="; + }) + ]; + nativeBuildInputs = [ pkg-config pcre ]; makeFlags = ["PREFIX=$(out)"]; diff --git a/pkgs/applications/misc/binance/default.nix b/pkgs/applications/misc/binance/default.nix index db287cb37e69..c86342f6e787 100644 --- a/pkgs/applications/misc/binance/default.nix +++ b/pkgs/applications/misc/binance/default.nix @@ -1,16 +1,13 @@ -{ lib, stdenv, fetchurl, dpkg, autoPatchelfHook, makeWrapper, electron_12, -alsa-lib, gtk3, libxshmfence, mesa, nss, popt }: +{ lib, stdenv, fetchurl, dpkg, autoPatchelfHook, makeWrapper, electron +, alsa-lib, gtk3, libxshmfence, mesa, nss, popt }: -let - electron = electron_12; - -in stdenv.mkDerivation rec { +stdenv.mkDerivation rec { pname = "binance"; - version = "1.25.0"; + version = "1.26.0"; src = fetchurl { url = "https://github.com/binance/desktop/releases/download/v${version}/${pname}-${version}-amd64-linux.deb"; - sha256 = "sha256-oXXzrRhdaWP8GcWI/Ugl8BrDWomZ+hsy5Om0+ME+zY0="; + sha256 = "sha256-UNqz/0IQ1nWANk83X7IVwvZTJayqNO5xPS6oECCgqHI="; }; nativeBuildInputs = [ diff --git a/pkgs/applications/misc/bklk/default.nix b/pkgs/applications/misc/bklk/default.nix index 86b596d395ec..62aeb7c91a5f 100644 --- a/pkgs/applications/misc/bklk/default.nix +++ b/pkgs/applications/misc/bklk/default.nix @@ -11,6 +11,8 @@ stdenv.mkDerivation rec { sha256 = "sha256-R3H6tv6fzQG41Y2rui0K8fdQ/+Ywnc5hqTPFjktrhF8="; }; + makeFlags = [ "CC=$$CXX" ]; + buildInputs = [ ncurses ]; installPhase = '' diff --git a/pkgs/applications/misc/calibre/default.nix b/pkgs/applications/misc/calibre/default.nix index a96be344b3d4..a991d7c0d13d 100644 --- a/pkgs/applications/misc/calibre/default.nix +++ b/pkgs/applications/misc/calibre/default.nix @@ -27,21 +27,20 @@ mkDerivation rec { pname = "calibre"; - version = "5.30.0"; + version = "5.31.1"; src = fetchurl { url = "https://download.calibre-ebook.com/${version}/${pname}-${version}.tar.xz"; - sha256 = "058dqqxhc3pl4is1idlnc3pz80k4r681d5aj4a26v9acp8j7zy4f"; + sha256 = "sha256-3LGEWuHms54ji9GWSyLl8cFWIRBqHY1Jf/CNPJOywrU="; }; - # https://sources.debian.org/patches/calibre/5.30.0+dfsg-1 + # https://sources.debian.org/patches/calibre/5.31.1+dfsg-1 patches = [ # allow for plugin update check, but no calibre version check (fetchpatch { - name = "0001_only_plugin_update.patch"; - url = - "https://sources.debian.org/data/main/c/calibre/${version}%2Bdfsg-1/debian/patches/0001-only-plugin-update.patch"; - sha256 = "sha256-aGT8rJ/eQKAkmyHBWdY0ouZuWvDwtLVJU5xY6d3hY3k="; + name = "0001-only-plugin-update.patch"; + url = "https://raw.githubusercontent.com/debian-calibre/calibre/debian/${version}%2Bdfsg-1/debian/patches/0001-only-plugin-update.patch"; + sha256 = "sha256-dLzO1TWP7Q4nw2a3oN7qlhGCmcA0NKJrZidUnD6hUMA="; }) ] ++ lib.optional (!unrarSupport) ./dont_build_unrar_plugin.patch; diff --git a/pkgs/applications/misc/catclock/default.nix b/pkgs/applications/misc/catclock/default.nix index 9c6b1812683a..768eb7b308e4 100644 --- a/pkgs/applications/misc/catclock/default.nix +++ b/pkgs/applications/misc/catclock/default.nix @@ -1,7 +1,8 @@ { lib, stdenv, fetchFromGitHub, xlibsWrapper, motif }: stdenv.mkDerivation { - name = "catclock-2015-10-04"; + pname = "catclock"; + version = "unstable-2015-10-04"; src = fetchFromGitHub { owner = "BarkyTheDog"; diff --git a/pkgs/applications/misc/cherrytree/default.nix b/pkgs/applications/misc/cherrytree/default.nix index 61150d56fbbd..5802f21a8749 100644 --- a/pkgs/applications/misc/cherrytree/default.nix +++ b/pkgs/applications/misc/cherrytree/default.nix @@ -13,7 +13,6 @@ , sqlite , curl , libuchardet -, fmt , spdlog }: @@ -44,7 +43,6 @@ stdenv.mkDerivation rec { sqlite curl libuchardet - fmt spdlog ]; diff --git a/pkgs/applications/misc/cipher/default.nix b/pkgs/applications/misc/cipher/default.nix index 5675676d9519..fb373938d5ac 100644 --- a/pkgs/applications/misc/cipher/default.nix +++ b/pkgs/applications/misc/cipher/default.nix @@ -60,5 +60,6 @@ stdenv.mkDerivation rec { maintainers = with maintainers; [ xiorcale ] ++ teams.pantheon.members; platforms = platforms.linux; license = licenses.gpl3Plus; + mainProgram = "com.github.arshubham.cipher"; }; } diff --git a/pkgs/applications/misc/colort/default.nix b/pkgs/applications/misc/colort/default.nix index a4283e5ebb93..7a1ae7a9e2f4 100644 --- a/pkgs/applications/misc/colort/default.nix +++ b/pkgs/applications/misc/colort/default.nix @@ -1,7 +1,8 @@ { lib, stdenv, fetchFromGitHub }: stdenv.mkDerivation { - name = "colort-unstable-2017-03-12"; + pname = "colort"; + version = "unstable-2017-03-12"; src = fetchFromGitHub { owner = "neeasade"; @@ -10,7 +11,7 @@ stdenv.mkDerivation { sha256 = "10n8rbr2h6hz86hcx73f86pjbbfiaw2rvxsk0yfajnma7bpxgdxw"; }; - makeFlags = ["PREFIX=$(out)"]; + makeFlags = [ "PREFIX=$(out)" ]; meta = with lib; { description = "A program for 'tinting' color values"; diff --git a/pkgs/applications/misc/coreaction/default.nix b/pkgs/applications/misc/cubocore-packages/coreaction/default.nix similarity index 96% rename from pkgs/applications/misc/coreaction/default.nix rename to pkgs/applications/misc/cubocore-packages/coreaction/default.nix index be9d02bf3393..f17730cc7e95 100644 --- a/pkgs/applications/misc/coreaction/default.nix +++ b/pkgs/applications/misc/cubocore-packages/coreaction/default.nix @@ -1,4 +1,4 @@ -{ mkDerivation, lib, fetchFromGitLab, fetchpatch, qtsvg, qtbase, libcsys, libcprime, cmake, ninja, }: +{ mkDerivation, lib, fetchFromGitLab, fetchpatch, qtsvg, qtbase, cmake, ninja, libcprime, libcsys }: mkDerivation rec { pname = "coreaction"; @@ -27,8 +27,8 @@ mkDerivation rec { buildInputs = [ qtsvg qtbase - libcsys libcprime + libcsys ]; meta = with lib; { diff --git a/pkgs/tools/archivers/corearchiver/default.nix b/pkgs/applications/misc/cubocore-packages/corearchiver/default.nix similarity index 92% rename from pkgs/tools/archivers/corearchiver/default.nix rename to pkgs/applications/misc/cubocore-packages/corearchiver/default.nix index 217520dde994..56a05bc434ec 100644 --- a/pkgs/tools/archivers/corearchiver/default.nix +++ b/pkgs/applications/misc/cubocore-packages/corearchiver/default.nix @@ -1,4 +1,4 @@ -{ mkDerivation, lib, fetchFromGitLab, qtbase, libarchive, libarchive-qt, libcprime, cmake, ninja, }: +{ mkDerivation, lib, fetchFromGitLab, qtbase, libarchive, libarchive-qt, cmake, ninja, libcprime, libcsys }: mkDerivation rec { pname = "corearchiver"; @@ -18,9 +18,10 @@ mkDerivation rec { buildInputs = [ qtbase - libcprime libarchive-qt libarchive + libcprime + libcsys ]; meta = with lib; { diff --git a/pkgs/applications/misc/corefm/default.nix b/pkgs/applications/misc/cubocore-packages/corefm/default.nix similarity index 88% rename from pkgs/applications/misc/corefm/default.nix rename to pkgs/applications/misc/cubocore-packages/corefm/default.nix index 9ad99e3aa06b..3ec918db7af9 100644 --- a/pkgs/applications/misc/corefm/default.nix +++ b/pkgs/applications/misc/cubocore-packages/corefm/default.nix @@ -1,4 +1,4 @@ -{ mkDerivation, lib, fetchFromGitLab, qtbase, libcprime, libcsys, cmake, ninja }: +{ mkDerivation, lib, fetchFromGitLab, qtbase, cmake, ninja, libcprime, libcsys }: mkDerivation rec { pname = "corefm"; diff --git a/pkgs/applications/misc/coregarage/default.nix b/pkgs/applications/misc/cubocore-packages/coregarage/default.nix similarity index 92% rename from pkgs/applications/misc/coregarage/default.nix rename to pkgs/applications/misc/cubocore-packages/coregarage/default.nix index 6d665479764a..719047c8de7b 100644 --- a/pkgs/applications/misc/coregarage/default.nix +++ b/pkgs/applications/misc/cubocore-packages/coregarage/default.nix @@ -1,4 +1,4 @@ -{ mkDerivation, lib, fetchFromGitLab, qtbase, libarchive, libarchive-qt, libcprime, cmake, ninja }: +{ mkDerivation, lib, fetchFromGitLab, qtbase, libarchive, libarchive-qt, cmake, ninja, libcprime, libcsys }: mkDerivation rec { pname = "coregarage"; @@ -18,9 +18,10 @@ mkDerivation rec { buildInputs = [ qtbase - libcprime libarchive libarchive-qt + libcprime + libcsys ]; meta = with lib; { diff --git a/pkgs/applications/misc/corehunt/default.nix b/pkgs/applications/misc/cubocore-packages/corehunt/default.nix similarity index 86% rename from pkgs/applications/misc/corehunt/default.nix rename to pkgs/applications/misc/cubocore-packages/corehunt/default.nix index ad1fabb25043..fb9bcd5e8ef4 100644 --- a/pkgs/applications/misc/corehunt/default.nix +++ b/pkgs/applications/misc/cubocore-packages/corehunt/default.nix @@ -1,4 +1,4 @@ -{ mkDerivation, lib, fetchFromGitLab, qtbase, libcprime, cmake, ninja }: +{ mkDerivation, lib, fetchFromGitLab, qtbase, cmake, ninja, libcprime, libcsys }: mkDerivation rec { pname = "corehunt"; @@ -19,6 +19,7 @@ mkDerivation rec { buildInputs = [ qtbase libcprime + libcsys ]; meta = with lib; { diff --git a/pkgs/applications/graphics/coreimage/default.nix b/pkgs/applications/misc/cubocore-packages/coreimage/default.nix similarity index 86% rename from pkgs/applications/graphics/coreimage/default.nix rename to pkgs/applications/misc/cubocore-packages/coreimage/default.nix index 1dcff1f6e8f2..224c946d1175 100644 --- a/pkgs/applications/graphics/coreimage/default.nix +++ b/pkgs/applications/misc/cubocore-packages/coreimage/default.nix @@ -1,4 +1,4 @@ -{ mkDerivation, lib, fetchFromGitLab, libcprime, qtbase, cmake, ninja }: +{ mkDerivation, lib, fetchFromGitLab, qtbase, cmake, ninja, libcprime, libcsys }: mkDerivation rec { pname = "coreimage"; @@ -19,6 +19,7 @@ mkDerivation rec { buildInputs = [ qtbase libcprime + libcsys ]; meta = with lib; { diff --git a/pkgs/applications/misc/cubocore-packages/coreinfo/default.nix b/pkgs/applications/misc/cubocore-packages/coreinfo/default.nix new file mode 100644 index 000000000000..d8df86abd870 --- /dev/null +++ b/pkgs/applications/misc/cubocore-packages/coreinfo/default.nix @@ -0,0 +1,35 @@ +{ mkDerivation, lib, fetchFromGitLab, qtbase, libzen, libmediainfo, zlib, cmake, ninja, libcprime, libcsys }: + +mkDerivation rec { + pname = "coreinfo"; + version = "4.2.0"; + + src = fetchFromGitLab { + owner = "cubocore/coreapps"; + repo = pname; + rev = "v${version}"; + sha256 = "sha256-kLBOvvulHE1+4TyZVEVZwEA+Id7+w8fI3ll+QL2ukr0="; + }; + + nativeBuildInputs = [ + cmake + ninja + ]; + + buildInputs = [ + qtbase + libzen + libmediainfo + zlib + libcprime + libcsys + ]; + + meta = with lib; { + description = "A file information tool from the C Suite"; + homepage = "https://gitlab.com/cubocore/coreapps/coreinfo"; + license = licenses.gpl3Plus; + maintainers = with maintainers; [ dan4ik605743 ]; + platforms = platforms.linux; + }; +} diff --git a/pkgs/applications/misc/cubocore-packages/corekeyboard/default.nix b/pkgs/applications/misc/cubocore-packages/corekeyboard/default.nix new file mode 100644 index 000000000000..3d4e6ddc3010 --- /dev/null +++ b/pkgs/applications/misc/cubocore-packages/corekeyboard/default.nix @@ -0,0 +1,35 @@ +{ mkDerivation, lib, fetchFromGitLab, qtbase, qtx11extras, xorg, cmake, ninja, libcprime, libcsys }: + +mkDerivation rec { + pname = "corekeyboard"; + version = "4.2.0"; + + src = fetchFromGitLab { + owner = "cubocore/coreapps"; + repo = pname; + rev = "v${version}"; + sha256 = "sha256-0CbQ43BN4ORvtxs6FwNkgk/0jcVdFJq/tqvjUGYanM4="; + }; + + nativeBuildInputs = [ + cmake + ninja + ]; + + buildInputs = [ + qtbase + qtx11extras + xorg.libXtst + xorg.libX11 + libcprime + libcsys + ]; + + meta = with lib; { + description = "A virtual keyboard for X11 from the C Suite"; + homepage = "https://gitlab.com/cubocore/coreapps/corekeyboard"; + license = licenses.gpl3Plus; + maintainers = with maintainers; [ dan4ik605743 ]; + platforms = platforms.linux; + }; +} diff --git a/pkgs/applications/misc/cubocore-packages/corepad/default.nix b/pkgs/applications/misc/cubocore-packages/corepad/default.nix new file mode 100644 index 000000000000..fcd1bfa4a4ff --- /dev/null +++ b/pkgs/applications/misc/cubocore-packages/corepad/default.nix @@ -0,0 +1,32 @@ +{ mkDerivation, lib, fetchFromGitLab, qtbase, cmake, ninja, libcprime, libcsys }: + +mkDerivation rec { + pname = "corepad"; + version = "4.2.0"; + + src = fetchFromGitLab { + owner = "cubocore/coreapps"; + repo = pname; + rev = "v${version}"; + sha256 = "sha256-2bGHVv0+0NlkIqnvWm014Kr20uARWnOS5xSuNmCt/bQ="; + }; + + nativeBuildInputs = [ + cmake + ninja + ]; + + buildInputs = [ + qtbase + libcprime + libcsys + ]; + + meta = with lib; { + description = "A document editor from the C Suite"; + homepage = "https://gitlab.com/cubocore/coreapps/corepad"; + license = licenses.gpl3Plus; + maintainers = with maintainers; [ dan4ik605743 ]; + platforms = platforms.linux; + }; +} diff --git a/pkgs/applications/misc/cubocore-packages/corepaint/default.nix b/pkgs/applications/misc/cubocore-packages/corepaint/default.nix new file mode 100644 index 000000000000..6410da3ba607 --- /dev/null +++ b/pkgs/applications/misc/cubocore-packages/corepaint/default.nix @@ -0,0 +1,32 @@ +{ mkDerivation, lib, fetchFromGitLab, qtbase, cmake, ninja, libcprime, libcsys }: + +mkDerivation rec { + pname = "corepaint"; + version = "4.2.0"; + + src = fetchFromGitLab { + owner = "cubocore/coreapps"; + repo = pname; + rev = "v${version}"; + sha256 = "sha256-nATraYm7FZEXoNWgXt1G86KdrAvRgM358F+YdfWcnkg="; + }; + + nativeBuildInputs = [ + cmake + ninja + ]; + + buildInputs = [ + qtbase + libcprime + libcsys + ]; + + meta = with lib; { + description = "A paint app from the C Suite"; + homepage = "https://gitlab.com/cubocore/coreapps/corepaint"; + license = licenses.gpl3Plus; + maintainers = with maintainers; [ dan4ik605743 ]; + platforms = platforms.linux; + }; +} diff --git a/pkgs/applications/misc/cubocore-packages/corepdf/default.nix b/pkgs/applications/misc/cubocore-packages/corepdf/default.nix new file mode 100644 index 000000000000..bb93391c2af8 --- /dev/null +++ b/pkgs/applications/misc/cubocore-packages/corepdf/default.nix @@ -0,0 +1,33 @@ +{ mkDerivation, lib, fetchFromGitLab, qtbase, poppler, cmake, ninja, libcprime, libcsys }: + +mkDerivation rec { + pname = "corepdf"; + version = "4.2.0"; + + src = fetchFromGitLab { + owner = "cubocore/coreapps"; + repo = pname; + rev = "v${version}"; + sha256 = "sha256-HeOklgCwJ5h3DeelJOZqasG+eC9DGG3R0Cqg2yPKYhM="; + }; + + nativeBuildInputs = [ + cmake + ninja + ]; + + buildInputs = [ + qtbase + poppler + libcprime + libcsys + ]; + + meta = with lib; { + description = "A PDF viewer from the C Suite"; + homepage = "https://gitlab.com/cubocore/coreapps/corepdf"; + license = licenses.gpl3Plus; + maintainers = with maintainers; [ dan4ik605743 ]; + platforms = platforms.linux; + }; +} diff --git a/pkgs/applications/misc/cubocore-packages/corepins/default.nix b/pkgs/applications/misc/cubocore-packages/corepins/default.nix new file mode 100644 index 000000000000..80d3a096ffe6 --- /dev/null +++ b/pkgs/applications/misc/cubocore-packages/corepins/default.nix @@ -0,0 +1,32 @@ +{ mkDerivation, lib, fetchFromGitLab, qtbase, cmake, ninja, libcprime, libcsys }: + +mkDerivation rec { + pname = "corepins"; + version = "4.2.0"; + + src = fetchFromGitLab { + owner = "cubocore/coreapps"; + repo = pname; + rev = "v${version}"; + sha256 = "sha256-H/l/MHHrTmkfznVKUHFAhim8b/arT5SNK5fxTvjsTE4="; + }; + + nativeBuildInputs = [ + cmake + ninja + ]; + + buildInputs = [ + qtbase + libcprime + libcsys + ]; + + meta = with lib; { + description = "A bookmarking app from the C Suite"; + homepage = "https://gitlab.com/cubocore/coreapps/corepins"; + license = licenses.gpl3Plus; + maintainers = with maintainers; [ dan4ik605743 ]; + platforms = platforms.linux; + }; +} diff --git a/pkgs/applications/misc/cubocore-packages/corerenamer/default.nix b/pkgs/applications/misc/cubocore-packages/corerenamer/default.nix new file mode 100644 index 000000000000..f92d532ba4a5 --- /dev/null +++ b/pkgs/applications/misc/cubocore-packages/corerenamer/default.nix @@ -0,0 +1,32 @@ +{ mkDerivation, lib, fetchFromGitLab, qtbase, cmake, ninja, libcprime, libcsys }: + +mkDerivation rec { + pname = "corerenamer"; + version = "4.2.0"; + + src = fetchFromGitLab { + owner = "cubocore/coreapps"; + repo = pname; + rev = "v${version}"; + sha256 = "sha256-OI7M7vV0CA42J5cWCqgGKEzUUHSgIJCWRTXmKRD6Jb0="; + }; + + nativeBuildInputs = [ + cmake + ninja + ]; + + buildInputs = [ + qtbase + libcprime + libcsys + ]; + + meta = with lib; { + description = "A batch file renamer from the C Suite"; + homepage = "https://gitlab.com/cubocore/coreapps/corerenamer"; + license = licenses.gpl3Plus; + maintainers = with maintainers; [ dan4ik605743 ]; + platforms = platforms.linux; + }; +} diff --git a/pkgs/tools/misc/coreshot/default.nix b/pkgs/applications/misc/cubocore-packages/coreshot/default.nix similarity index 85% rename from pkgs/tools/misc/coreshot/default.nix rename to pkgs/applications/misc/cubocore-packages/coreshot/default.nix index bb2404b1ed52..bf9f5e49aea6 100644 --- a/pkgs/tools/misc/coreshot/default.nix +++ b/pkgs/applications/misc/cubocore-packages/coreshot/default.nix @@ -1,4 +1,4 @@ -{ mkDerivation, lib, fetchFromGitLab, qtbase, qtx11extras, libcprime, cmake, ninja }: +{ mkDerivation, lib, fetchFromGitLab, qtbase, qtx11extras, cmake, ninja, libcprime, libcsys }: mkDerivation rec { pname = "coreshot"; @@ -20,6 +20,7 @@ mkDerivation rec { qtbase qtx11extras libcprime + libcsys ]; meta = with lib; { diff --git a/pkgs/applications/misc/cubocore-packages/corestats/default.nix b/pkgs/applications/misc/cubocore-packages/corestats/default.nix new file mode 100644 index 000000000000..a6d71eaa6cb6 --- /dev/null +++ b/pkgs/applications/misc/cubocore-packages/corestats/default.nix @@ -0,0 +1,33 @@ +{ mkDerivation, lib, fetchFromGitLab, qtbase, lm_sensors, cmake, ninja, libcprime, libcsys }: + +mkDerivation rec { + pname = "corestats"; + version = "4.2.0"; + + src = fetchFromGitLab { + owner = "cubocore/coreapps"; + repo = pname; + rev = "v${version}"; + sha256 = "sha256-/WBetvbd8e4v+j6e2xbGtSLwNMdLlaahSIks6r889B4="; + }; + + nativeBuildInputs = [ + cmake + ninja + ]; + + buildInputs = [ + qtbase + lm_sensors + libcprime + libcsys + ]; + + meta = with lib; { + description = "A system resource viewer from the C Suite"; + homepage = "https://gitlab.com/cubocore/coreapps/corestats"; + license = licenses.gpl3Plus; + maintainers = with maintainers; [ dan4ik605743 ]; + platforms = platforms.linux; + }; +} diff --git a/pkgs/applications/misc/cubocore-packages/corestuff/default.nix b/pkgs/applications/misc/cubocore-packages/corestuff/default.nix new file mode 100644 index 000000000000..57216f4710da --- /dev/null +++ b/pkgs/applications/misc/cubocore-packages/corestuff/default.nix @@ -0,0 +1,35 @@ +{ mkDerivation, lib, fetchFromGitLab, qtbase, qtx11extras, kglobalaccel, xorg, cmake, ninja, libcprime, libcsys }: + +mkDerivation rec { + pname = "corestuff"; + version = "4.2.0"; + + src = fetchFromGitLab { + owner = "cubocore/coreapps"; + repo = pname; + rev = "v${version}"; + sha256 = "sha256-/mmCIHZXn/Jpjr37neI6owWuU1VO6o7wmRj6ZH8tUbo="; + }; + + nativeBuildInputs = [ + cmake + ninja + ]; + + buildInputs = [ + qtbase + qtx11extras + kglobalaccel + xorg.libXcomposite + libcprime + libcsys + ]; + + meta = with lib; { + description = "An activity viewer from the C Suite"; + homepage = "https://gitlab.com/cubocore/coreapps/corestuff"; + license = licenses.gpl3Plus; + maintainers = with maintainers; [ dan4ik605743 ]; + platforms = platforms.linux; + }; +} diff --git a/pkgs/applications/terminal-emulators/coreterminal/default.nix b/pkgs/applications/misc/cubocore-packages/coreterminal/default.nix similarity index 97% rename from pkgs/applications/terminal-emulators/coreterminal/default.nix rename to pkgs/applications/misc/cubocore-packages/coreterminal/default.nix index e358fae0716f..c2085686aab8 100644 --- a/pkgs/applications/terminal-emulators/coreterminal/default.nix +++ b/pkgs/applications/misc/cubocore-packages/coreterminal/default.nix @@ -1,12 +1,13 @@ { mkDerivation , lib , fetchFromGitLab -, cmake -, ninja , qtbase , qtserialport , qtermwidget +, cmake +, ninja , libcprime +, libcsys }: mkDerivation rec { @@ -30,6 +31,7 @@ mkDerivation rec { qtserialport qtermwidget libcprime + libcsys ]; meta = with lib; { diff --git a/pkgs/applications/misc/cubocore-packages/coretime/default.nix b/pkgs/applications/misc/cubocore-packages/coretime/default.nix new file mode 100644 index 000000000000..af33d474e350 --- /dev/null +++ b/pkgs/applications/misc/cubocore-packages/coretime/default.nix @@ -0,0 +1,33 @@ +{ mkDerivation, lib, fetchFromGitLab, qtbase, qtmultimedia, cmake, ninja, libcprime, libcsys }: + +mkDerivation rec { + pname = "coretime"; + version = "4.2.0"; + + src = fetchFromGitLab { + owner = "cubocore/coreapps"; + repo = pname; + rev = "v${version}"; + sha256 = "sha256-b7oqHhsuHsy96IAXPUtw+WqneEHgn/nUDgHiJt2aXXM="; + }; + + nativeBuildInputs = [ + cmake + ninja + ]; + + buildInputs = [ + qtbase + qtmultimedia + libcprime + libcsys + ]; + + meta = with lib; { + description = "A time related task manager from the C Suite"; + homepage = "https://gitlab.com/cubocore/coreapps/coretime"; + license = licenses.gpl3Plus; + maintainers = with maintainers; [ dan4ik605743 ]; + platforms = platforms.linux; + }; +} diff --git a/pkgs/applications/misc/coretoppings/0001-fix-install-phase.patch b/pkgs/applications/misc/cubocore-packages/coretoppings/0001-fix-install-phase.patch similarity index 100% rename from pkgs/applications/misc/coretoppings/0001-fix-install-phase.patch rename to pkgs/applications/misc/cubocore-packages/coretoppings/0001-fix-install-phase.patch diff --git a/pkgs/applications/misc/coretoppings/default.nix b/pkgs/applications/misc/cubocore-packages/coretoppings/default.nix similarity index 76% rename from pkgs/applications/misc/coretoppings/default.nix rename to pkgs/applications/misc/cubocore-packages/coretoppings/default.nix index eff253ffcc2e..154f4a389948 100644 --- a/pkgs/applications/misc/coretoppings/default.nix +++ b/pkgs/applications/misc/cubocore-packages/coretoppings/default.nix @@ -1,8 +1,32 @@ -{ mkDerivation, lib, fetchFromGitLab, libcprime, cmake, ninja -, ffmpeg, qtbase, qtx11extras, qtconnectivity, v4l-utils, grim, wf-recorder -, libdbusmenu, playerctl, xorg, iio-sensor-proxy, inotify-tools -, bluez, networkmanager, connman, redshift, gawk -, polkit, libnotify, systemd, xdg-utils }: +{ mkDerivation +, lib +, fetchFromGitLab +, ffmpeg +, cmake +, ninja +, qtbase +, qtx11extras +, qtconnectivity +, v4l-utils +, grim +, wf-recorder +, libdbusmenu +, playerctl +, xorg +, iio-sensor-proxy +, inotify-tools +, bluez +, networkmanager +, connman +, redshift +, gawk +, polkit +, libnotify +, systemd +, xdg-utils +, libcprime +, libcsys +}: mkDerivation rec { pname = "coretoppings"; @@ -15,22 +39,21 @@ mkDerivation rec { sha256 = "sha256-DpmzGqjW1swLirRLzd5nblAb40LHAmf8nL+VykQNL3E="; }; - nativeBuildInputs = [ - cmake - ninja - ]; - patches = [ # Fix file cannot create directory: /var/empty/share/polkit-1/actions ./0001-fix-install-phase.patch ]; + nativeBuildInputs = [ + cmake + ninja + ]; + buildInputs = [ qtbase qtx11extras qtconnectivity libdbusmenu - libcprime ffmpeg v4l-utils grim @@ -50,6 +73,8 @@ mkDerivation rec { libnotify systemd xdg-utils + libcprime + libcsys ]; meta = with lib; { diff --git a/pkgs/applications/misc/cubocore-packages/coreuniverse/default.nix b/pkgs/applications/misc/cubocore-packages/coreuniverse/default.nix new file mode 100644 index 000000000000..0a6ccaf72142 --- /dev/null +++ b/pkgs/applications/misc/cubocore-packages/coreuniverse/default.nix @@ -0,0 +1,32 @@ +{ mkDerivation, lib, fetchFromGitLab, qtbase, cmake, ninja, libcprime, libcsys }: + +mkDerivation rec { + pname = "coreuniverse"; + version = "4.2.0"; + + src = fetchFromGitLab { + owner = "cubocore/coreapps"; + repo = pname; + rev = "v${version}"; + sha256 = "sha256-YZCMyYMAvd/xQYNUnURIvmQwaM+X+Ql93OS4ZIyAZLY="; + }; + + nativeBuildInputs = [ + cmake + ninja + ]; + + buildInputs = [ + qtbase + libcprime + libcsys + ]; + + meta = with lib; { + description = "Shows information about apps from the C Suite"; + homepage = "https://gitlab.com/cubocore/coreapps/coreuniverse"; + license = licenses.gpl3Plus; + maintainers = with maintainers; [ dan4ik605743 ]; + platforms = platforms.linux; + }; +} diff --git a/pkgs/development/libraries/libcprime/0001-fix-application-dirs.patch b/pkgs/applications/misc/cubocore-packages/libcprime/0001-fix-application-dirs.patch similarity index 100% rename from pkgs/development/libraries/libcprime/0001-fix-application-dirs.patch rename to pkgs/applications/misc/cubocore-packages/libcprime/0001-fix-application-dirs.patch diff --git a/pkgs/development/libraries/libcprime/default.nix b/pkgs/applications/misc/cubocore-packages/libcprime/default.nix similarity index 93% rename from pkgs/development/libraries/libcprime/default.nix rename to pkgs/applications/misc/cubocore-packages/libcprime/default.nix index d312c832243a..00e297bf276a 100644 --- a/pkgs/development/libraries/libcprime/default.nix +++ b/pkgs/applications/misc/cubocore-packages/libcprime/default.nix @@ -19,7 +19,9 @@ mkDerivation rec { sha256 = "sha256-RywvFATA/+fDP/TR5QRWaJlDgy3EID//iVmrJcj3GXI="; }; - patches = [ ./0001-fix-application-dirs.patch ]; + patches = [ + ./0001-fix-application-dirs.patch + ]; nativeBuildInputs = [ cmake diff --git a/pkgs/development/libraries/libcsys/default.nix b/pkgs/applications/misc/cubocore-packages/libcsys/default.nix similarity index 98% rename from pkgs/development/libraries/libcsys/default.nix rename to pkgs/applications/misc/cubocore-packages/libcsys/default.nix index cec6e501bb5b..d1dde9942e92 100644 --- a/pkgs/development/libraries/libcsys/default.nix +++ b/pkgs/applications/misc/cubocore-packages/libcsys/default.nix @@ -1,4 +1,4 @@ -{ mkDerivation, lib, fetchFromGitLab, udisks2, qtbase, cmake, ninja, }: +{ mkDerivation, lib, fetchFromGitLab, udisks2, qtbase, cmake, ninja }: mkDerivation rec { pname = "libcsys"; diff --git a/pkgs/applications/misc/curaengine/stable.nix b/pkgs/applications/misc/curaengine/stable.nix index 148553da1621..3c74aaaded4a 100644 --- a/pkgs/applications/misc/curaengine/stable.nix +++ b/pkgs/applications/misc/curaengine/stable.nix @@ -13,8 +13,6 @@ stdenv.mkDerivation { postPatch = '' substituteInPlace Makefile --replace "--static" "" - '' + lib.optionalString stdenv.isi686 '' - substituteInPlace Makefile --replace "-flto" "" ''; installPhase = '' diff --git a/pkgs/applications/misc/dfilemanager/default.nix b/pkgs/applications/misc/dfilemanager/default.nix index 19cfa95a88e4..6a9453eb583a 100644 --- a/pkgs/applications/misc/dfilemanager/default.nix +++ b/pkgs/applications/misc/dfilemanager/default.nix @@ -2,7 +2,7 @@ mkDerivation { pname = "dfilemanager"; - version = "git-2020-09-04"; + version = "unstable-2020-09-04"; src = fetchFromGitHub { owner = "probonopd"; diff --git a/pkgs/applications/misc/ding/default.nix b/pkgs/applications/misc/ding/default.nix index 649fbe55fae2..3c193d3f569a 100644 --- a/pkgs/applications/misc/ding/default.nix +++ b/pkgs/applications/misc/ding/default.nix @@ -10,10 +10,11 @@ let }; in stdenv.mkDerivation rec { - name = "ding-1.9"; + pname = "ding"; + version = "1.9"; src = fetchurl { - url = "http://ftp.tu-chemnitz.de/pub/Local/urz/ding/${name}.tar.gz"; + url = "http://ftp.tu-chemnitz.de/pub/Local/urz/ding/ding-${version}.tar.gz"; sha256 = "sha256-aabIH894WihsBTo1LzIBzIZxxyhRYVxLcHpDQwmwmOU="; }; diff --git a/pkgs/applications/misc/dmenu/default.nix b/pkgs/applications/misc/dmenu/default.nix index 62f02ce67142..42bc05998667 100644 --- a/pkgs/applications/misc/dmenu/default.nix +++ b/pkgs/applications/misc/dmenu/default.nix @@ -1,10 +1,11 @@ { lib, stdenv, fetchurl, libX11, libXinerama, libXft, zlib, patches ? null }: stdenv.mkDerivation rec { - name = "dmenu-5.0"; + pname = "dmenu"; + version = "5.0"; src = fetchurl { - url = "https://dl.suckless.org/tools/${name}.tar.gz"; + url = "https://dl.suckless.org/tools/dmenu-${version}.tar.gz"; sha256 = "1lvfxzg3chsgcqbc2vr0zic7vimijgmbvnspayx73kyvqi1f267y"; }; @@ -24,10 +25,10 @@ stdenv.mkDerivation rec { makeFlags = [ "CC:=$(CC)" ]; meta = with lib; { - description = "A generic, highly customizable, and efficient menu for the X Window System"; - homepage = "https://tools.suckless.org/dmenu"; - license = licenses.mit; - maintainers = with maintainers; [ pSub globin ]; - platforms = platforms.all; + description = "A generic, highly customizable, and efficient menu for the X Window System"; + homepage = "https://tools.suckless.org/dmenu"; + license = licenses.mit; + maintainers = with maintainers; [ pSub globin ]; + platforms = platforms.all; }; } diff --git a/pkgs/applications/misc/dunst/default.nix b/pkgs/applications/misc/dunst/default.nix index 67753b6e3710..698a9b7c3b5f 100644 --- a/pkgs/applications/misc/dunst/default.nix +++ b/pkgs/applications/misc/dunst/default.nix @@ -1,29 +1,22 @@ -{ stdenv, lib, fetchFromGitHub, makeWrapper, fetchpatch +{ stdenv, lib, fetchFromGitHub, makeWrapper , pkg-config, which, perl, libXrandr , cairo, dbus, systemd, gdk-pixbuf, glib, libX11, libXScrnSaver , wayland, wayland-protocols , libXinerama, libnotify, pango, xorgproto, librsvg +, testVersion, dunst }: stdenv.mkDerivation rec { pname = "dunst"; - version = "1.7.0"; + version = "1.7.1"; src = fetchFromGitHub { owner = "dunst-project"; repo = "dunst"; rev = "v${version}"; - sha256 = "sha256-BWbvGetXXCXbfPRY+u6gEfzBmX8PLSnI6a5vfCByiC0="; + sha256 = "0v15fhwzcg7zfn092sry0f4qb6dccz9bb312y9dadg745wf3n9qw"; }; - patches = [ - (fetchpatch { - # fixes double free (https://github.com/dunst-project/dunst/issues/957) - url = "https://github.com/dunst-project/dunst/commit/dc8efbbaff0e9ba881fa187a01bfe5c033fbdcf9.patch"; - sha256 = "sha256-xuODOFDP9Eqr3g8OtNnaMmTihhurfj2NLeZPr0TF4vY="; - }) - ]; - nativeBuildInputs = [ perl pkg-config which systemd makeWrapper ]; buildInputs = [ @@ -47,6 +40,8 @@ stdenv.mkDerivation rec { --set GDK_PIXBUF_MODULE_FILE "$GDK_PIXBUF_MODULE_FILE" ''; + passthru.tests.version = testVersion { package = dunst; }; + meta = with lib; { description = "Lightweight and customizable notification daemon"; homepage = "https://dunst-project.org/"; diff --git a/pkgs/applications/misc/far2l/default.nix b/pkgs/applications/misc/far2l/default.nix index 87eaed975352..3e74d04c5128 100644 --- a/pkgs/applications/misc/far2l/default.nix +++ b/pkgs/applications/misc/far2l/default.nix @@ -1,6 +1,6 @@ { lib, stdenv, fetchFromGitHub, makeWrapper, cmake, pkg-config, wxGTK30, glib, pcre, m4, bash , xdg-utils, gvfs, zip, unzip, gzip, bzip2, gnutar, p7zip, xz, imagemagick -, libuchardet, spdlog, xercesc, fmt, openssl, libssh, samba, neon, libnfs, libarchive }: +, libuchardet, spdlog, xercesc, openssl, libssh, samba, neon, libnfs, libarchive }: stdenv.mkDerivation rec { pname = "far2l"; @@ -15,7 +15,7 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ cmake pkg-config m4 makeWrapper imagemagick ]; - buildInputs = [ wxGTK30 glib pcre libuchardet spdlog xercesc fmt ] # base requirements of the build + buildInputs = [ wxGTK30 glib pcre libuchardet spdlog xercesc ] # base requirements of the build ++ [ openssl libssh samba neon libnfs libarchive ]; # optional feature packages, like protocol support for Network panel, or archive formats #++ lib.optional stdenv.isDarwin Cocoa # Mac support -- disabled, see "meta.broken" below diff --git a/pkgs/applications/misc/fbreader/default.nix b/pkgs/applications/misc/fbreader/default.nix index c2347d5fbb8b..c684d273bc75 100644 --- a/pkgs/applications/misc/fbreader/default.nix +++ b/pkgs/applications/misc/fbreader/default.nix @@ -1,9 +1,21 @@ -{ lib, stdenv, fetchFromGitHub, fetchpatch, pkg-config -, bzip2, curl, expat, fribidi, libunibreak, sqlite, zlib +{ lib +, stdenv +, fetchFromGitHub +, fetchpatch +, pkg-config +, bzip2 +, curl +, expat +, fribidi +, libunibreak +, sqlite +, zlib , uiTarget ? if !stdenv.isDarwin then "desktop" else "macosx" , uiType ? if !stdenv.isDarwin then "qt4" else "cocoa" -, qt4, gtk2 -, AppKit, Cocoa +, qt4 +, gtk2 +, AppKit +, Cocoa }: with lib; @@ -16,7 +28,8 @@ assert uiTarget == "macosx" -> uiType == "cocoa"; # which is way to old and no longer in nixpkgs. stdenv.mkDerivation { - name = "fbreader-${uiType}-0.99.6"; + pname = "fbreader-${uiType}"; + version = "0.99.6"; src = fetchFromGitHub { owner = "geometer"; @@ -53,7 +66,13 @@ stdenv.mkDerivation { nativeBuildInputs = [ pkg-config ]; buildInputs = [ - bzip2 curl expat fribidi libunibreak sqlite zlib + bzip2 + curl + expat + fribidi + libunibreak + sqlite + zlib ] ++ optional (uiType == "qt4") qt4 ++ optional (uiType == "gtk") gtk2 @@ -68,7 +87,7 @@ stdenv.mkDerivation { homepage = "http://www.fbreader.org/"; license = licenses.gpl3; broken = stdenv.isDarwin # untested, might work - || uiType == "gtk"; # builds, but the result is unusable, hangs a lot + || uiType == "gtk"; # builds, but the result is unusable, hangs a lot platforms = platforms.unix; maintainers = [ maintainers.coroa ]; }; diff --git a/pkgs/applications/misc/fehlstart/default.nix b/pkgs/applications/misc/fehlstart/default.nix index 992b62780828..69050ca661f9 100644 --- a/pkgs/applications/misc/fehlstart/default.nix +++ b/pkgs/applications/misc/fehlstart/default.nix @@ -1,7 +1,8 @@ { lib, stdenv, pkg-config, gtk2, keybinder, fetchFromGitLab }: stdenv.mkDerivation { - name = "fehlstart-9f4342d7"; + pname = "fehlstart"; + version = "unstable-2016-05-23"; src = fetchFromGitLab { owner = "fehlstart"; diff --git a/pkgs/applications/misc/flavours/default.nix b/pkgs/applications/misc/flavours/default.nix index c054c36859cc..5eafa0390771 100644 --- a/pkgs/applications/misc/flavours/default.nix +++ b/pkgs/applications/misc/flavours/default.nix @@ -2,18 +2,18 @@ rustPlatform.buildRustPackage rec { pname = "flavours"; - version = "0.5.1"; + version = "0.5.2"; src = fetchFromGitHub { owner = "Misterio77"; repo = pname; rev = "v${version}"; - sha256 = "sha256-77nSz3J/9TsptpSHRFYY8mZAvn+o35gro2OwQkGzEC0="; + sha256 = "sha256-P7F7PHP2EiZz6RgKbmqXRQOGG1P8TJ1emR0BEY9yBqk="; }; buildInputs = lib.optionals stdenv.isDarwin [ libiconv ]; - cargoSha256 = "sha256-UukLWMd8+wq5Y0dtePH312c1Nm4ztXPsoPHPN0nUb1w="; + cargoSha256 = "sha256-QlCjAtQGITGrWNKQM39QPmv/MPZaaHfwdHjal2i1qv4="; nativeBuildInputs = [ installShellFiles ]; diff --git a/pkgs/applications/misc/formatter/default.nix b/pkgs/applications/misc/formatter/default.nix index 4532b766f47b..440022da6eeb 100644 --- a/pkgs/applications/misc/formatter/default.nix +++ b/pkgs/applications/misc/formatter/default.nix @@ -74,5 +74,6 @@ stdenv.mkDerivation rec { maintainers = with maintainers; [ xiorcale ] ++ teams.pantheon.members; platforms = platforms.linux; license = licenses.lgpl2Plus; + mainProgram = "com.github.djaler.formatter"; }; } diff --git a/pkgs/applications/misc/gallery-dl/default.nix b/pkgs/applications/misc/gallery-dl/default.nix index 656a5f3bea48..20590552fc99 100644 --- a/pkgs/applications/misc/gallery-dl/default.nix +++ b/pkgs/applications/misc/gallery-dl/default.nix @@ -1,15 +1,15 @@ -{ lib, buildPythonApplication, fetchPypi, requests, pytestCheckHook }: +{ lib, buildPythonApplication, fetchPypi, requests, youtube-dl, pytestCheckHook }: buildPythonApplication rec { pname = "gallery_dl"; - version = "1.19.1"; + version = "1.19.2"; src = fetchPypi { inherit pname version; - sha256 = "ea1a7bf908507a87edffde6d6be93b8859ab0832ca788b61690a13aa5dd52216"; + sha256 = "7fec9ac69582dbd9922666e6ece3142ae52dc9679a2c4a613f6ee94ad09e5f68"; }; - propagatedBuildInputs = [ requests ]; + propagatedBuildInputs = [ requests youtube-dl ]; checkInputs = [ pytestCheckHook ]; pytestFlagsArray = [ diff --git a/pkgs/applications/misc/garmin-plugin/default.nix b/pkgs/applications/misc/garmin-plugin/default.nix index c2c3a69140b9..c401b2722565 100644 --- a/pkgs/applications/misc/garmin-plugin/default.nix +++ b/pkgs/applications/misc/garmin-plugin/default.nix @@ -1,26 +1,39 @@ -{ lib, stdenv, fetchurl, garmintools, libgcrypt, libusb-compat-0_1, pkg-config, tinyxml, zlib }: -stdenv.mkDerivation { - name = "garmin-plugin-0.3.26"; - src = fetchurl { - url = "https://github.com/adiesner/GarminPlugin/archive/V0.3.26.tar.gz"; - sha256 = "15gads1fj4sj970m5960dgnhys41ksi4cm53ldkf67wn8dc9i4k0"; +{ lib, stdenv, fetchFromGitHub, garmintools, libgcrypt, libusb-compat-0_1, pkg-config, tinyxml, zlib }: + +stdenv.mkDerivation rec { + pname = "garmin-plugin"; + version = "0.3.26"; + + src = fetchFromGitHub { + owner = "adiesner"; + repo = "GarminPlugin"; + rev = "V${version}"; + sha256 = "sha256-l0WAbEsQl1dCADf5gTepYjsA1rQCJMLcrTxRR4PfUus="; }; - sourceRoot = "GarminPlugin-0.3.26/src"; + + preConfigure = '' + cd src + ''; + nativeBuildInputs = [ pkg-config ]; + buildInputs = [ garmintools libusb-compat-0_1 libgcrypt tinyxml zlib ]; + configureFlags = [ "--with-libgcrypt-prefix=${libgcrypt.dev}" "--with-garmintools-incdir=${garmintools}/include" "--with-garmintools-libdir=${garmintools}/lib" ]; + installPhase = '' mkdir -p $out/lib/mozilla/plugins cp npGarminPlugin.so $out/lib/mozilla/plugins ''; - meta = { - homepage = "http://www.andreas-diesner.de/garminplugin"; - license = lib.licenses.gpl3; - maintainers = [ ]; - platforms = lib.platforms.linux; + + meta = with lib; { + homepage = "https://adiesner.github.io/GarminPlugin/"; + license = licenses.gpl3Plus; + maintainers = with maintainers; [ ]; + platforms = platforms.linux; }; } diff --git a/pkgs/applications/misc/gitit/default.nix b/pkgs/applications/misc/gitit/default.nix index a4ffd3bf88d3..365b3f6acd97 100644 --- a/pkgs/applications/misc/gitit/default.nix +++ b/pkgs/applications/misc/gitit/default.nix @@ -14,13 +14,13 @@ let plugins = if pluginSupport then plain - else haskell.lib.disableCabalFlag plain "plugins"; - static = haskell.lib.justStaticExecutables plugins; + else haskell.lib.compose.disableCabalFlag "plugins" plain; + static = haskell.lib.compose.justStaticExecutables plugins; in - (haskell.lib.overrideCabal static (drv: { + (haskell.lib.compose.overrideCabal (drv: { buildTools = (drv.buildTools or []) ++ [ removeReferencesTo ]; - })).overrideAttrs (drv: { + }) static).overrideAttrs (drv: { # These libraries are still referenced, because they generate # a `Paths_*` module for figuring out their version. diff --git a/pkgs/applications/misc/gkrellm/default.nix b/pkgs/applications/misc/gkrellm/default.nix index aaaab255c763..0a62ce4ea518 100644 --- a/pkgs/applications/misc/gkrellm/default.nix +++ b/pkgs/applications/misc/gkrellm/default.nix @@ -1,20 +1,32 @@ -{ lib, fetchurl, stdenv, gettext, pkg-config, glib, gtk2, libX11, libSM, libICE, which -, IOKit, copyDesktopItems, makeDesktopItem, wrapGAppsHook +{ lib +, fetchurl +, stdenv +, gettext +, pkg-config +, glib +, gtk2 +, libX11 +, libSM +, libICE +, which +, IOKit +, copyDesktopItems +, makeDesktopItem +, wrapGAppsHook }: -with lib; - stdenv.mkDerivation rec { - name = "gkrellm-2.3.11"; + pname = "gkrellm"; + version = "2.3.11"; src = fetchurl { - url = "http://gkrellm.srcbox.net/releases/${name}.tar.bz2"; + url = "http://gkrellm.srcbox.net/releases/gkrellm-${version}.tar.bz2"; sha256 = "01lccz4fga40isv09j8rjgr0qy10rff9vj042n6gi6gdv4z69q0y"; }; nativeBuildInputs = [ copyDesktopItems pkg-config which wrapGAppsHook ]; - buildInputs = [gettext glib gtk2 libX11 libSM libICE] - ++ optionals stdenv.isDarwin [ IOKit ]; + buildInputs = [ gettext glib gtk2 libX11 libSM libICE ] + ++ lib.optionals stdenv.isDarwin [ IOKit ]; hardeningDisable = [ "format" ]; @@ -48,7 +60,7 @@ stdenv.mkDerivation rec { }) ]; - meta = { + meta = with lib; { description = "Themeable process stack of system monitors"; longDescription = '' GKrellM is a single process stack of system monitors which diff --git a/pkgs/applications/misc/gpa/default.nix b/pkgs/applications/misc/gpa/default.nix index af204b235062..0d567dd79a10 100644 --- a/pkgs/applications/misc/gpa/default.nix +++ b/pkgs/applications/misc/gpa/default.nix @@ -1,10 +1,11 @@ { lib, stdenv, fetchurl, intltool, pkg-config, gtk2, gpgme, libgpg-error, libassuan }: stdenv.mkDerivation rec { - name = "gpa-0.10.0"; + pname = "gpa"; + version = "0.10.0"; src = fetchurl { - url = "mirror://gnupg/gpa/${name}.tar.bz2"; + url = "mirror://gnupg/gpa/gpa-${version}.tar.bz2"; sha256 = "1cbpc45f8qbdkd62p12s3q2rdq6fa5xdzwmcwd3xrj55bzkspnwm"; }; diff --git a/pkgs/applications/misc/gpxsee/default.nix b/pkgs/applications/misc/gpxsee/default.nix index bbe77c182205..85fef2cbb00d 100644 --- a/pkgs/applications/misc/gpxsee/default.nix +++ b/pkgs/applications/misc/gpxsee/default.nix @@ -2,13 +2,13 @@ mkDerivation rec { pname = "gpxsee"; - version = "9.6"; + version = "9.11"; src = fetchFromGitHub { owner = "tumic0"; repo = "GPXSee"; rev = version; - sha256 = "sha256-Yj8lR8zgIV+gshea7rzLbMF84n1nyN3DytiIkr3B274="; + sha256 = "sha256-5FGdcmkVOxjDngVQIlXnH3OPRMjaixqJ2Xb239usUuo="; }; patches = (substituteAll { diff --git a/pkgs/applications/misc/grip/default.nix b/pkgs/applications/misc/grip/default.nix index 557cd45c42c9..6a6666763c18 100644 --- a/pkgs/applications/misc/grip/default.nix +++ b/pkgs/applications/misc/grip/default.nix @@ -15,10 +15,11 @@ }: stdenv.mkDerivation rec { - name = "grip-4.2.2"; + pname = "grip"; + version = "4.2.2"; src = fetchurl { - url = "mirror://sourceforge/grip/${name}.tar.gz"; + url = "mirror://sourceforge/grip/grip-${version}.tar.gz"; sha256 = "sha256-nXtGgJeNYM8lyllNi9UdmsnVcHOCXfryWmKGZ9QFTHE="; }; diff --git a/pkgs/applications/misc/gv/default.nix b/pkgs/applications/misc/gv/default.nix index aa07058dc808..851f2d80c976 100644 --- a/pkgs/applications/misc/gv/default.nix +++ b/pkgs/applications/misc/gv/default.nix @@ -1,13 +1,11 @@ { lib, stdenv, fetchurl, Xaw3d, ghostscriptX, perl, pkg-config, libiconv }: -let - name = "gv-3.7.4"; -in -stdenv.mkDerivation { - inherit name; +stdenv.mkDerivation rec { + pname = "gv"; + version = "3.7.4"; src = fetchurl { - url = "mirror://gnu/gv/${name}.tar.gz"; + url = "mirror://gnu/gv/gv-${version}.tar.gz"; sha256 = "0q8s43z14vxm41pfa8s5h9kyyzk1fkwjhkiwbf2x70alm6rv6qi1"; }; diff --git a/pkgs/applications/misc/gxneur/default.nix b/pkgs/applications/misc/gxneur/default.nix index 9e8c5ddaef4a..7c32cec72192 100644 --- a/pkgs/applications/misc/gxneur/default.nix +++ b/pkgs/applications/misc/gxneur/default.nix @@ -1,10 +1,11 @@ { lib, stdenv, fetchurl, pkg-config, intltool, gtk2, xorg, glib, xneur, libglade, GConf, libappindicator-gtk2, pcre }: -stdenv.mkDerivation { - name = "gxneur-0.20.0"; +stdenv.mkDerivation rec { + pname = "gxneur"; + version = "0.20.0"; src = fetchurl { - url = "https://github.com/AndrewCrewKuznetsov/xneur-devel/raw/f66723feb272c68f7c22a8bf0dbcafa5e3a8a5ee/dists/0.20.0/gxneur_0.20.0.orig.tar.gz"; + url = "https://github.com/AndrewCrewKuznetsov/xneur-devel/raw/f66723feb272c68f7c22a8bf0dbcafa5e3a8a5ee/dists/${version}/gxneur_${version}.orig.tar.gz"; sha256 = "0avmhdcj0hpr55fc0iih8fjykmdhn34c8mwdnqvl8jh4nhxxchxr"; }; @@ -13,8 +14,17 @@ stdenv.mkDerivation { nativeBuildInputs = [ pkg-config intltool ]; buildInputs = [ - xorg.libX11 glib gtk2 xorg.libXpm xorg.libXt xorg.libXext xneur - libglade GConf pcre libappindicator-gtk2 + xorg.libX11 + glib + gtk2 + xorg.libXpm + xorg.libXt + xorg.libXext + xneur + libglade + GConf + pcre + libappindicator-gtk2 ]; meta = with lib; { diff --git a/pkgs/applications/misc/haxor-news/default.nix b/pkgs/applications/misc/haxor-news/default.nix index f5a723f59018..43c2eb242241 100644 --- a/pkgs/applications/misc/haxor-news/default.nix +++ b/pkgs/applications/misc/haxor-news/default.nix @@ -15,6 +15,7 @@ let sha256 = "09h1153wgr5x2ny7ds0w2m81n3bb9j8hjb8sjfnrg506r01clkyx"; }; }); + click = self.callPackage ../../../development/python-modules/click/7.nix { }; }; }; in diff --git a/pkgs/applications/misc/hstr/default.nix b/pkgs/applications/misc/hstr/default.nix index 3cda6d0a3181..888c7892514b 100644 --- a/pkgs/applications/misc/hstr/default.nix +++ b/pkgs/applications/misc/hstr/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchFromGitHub, readline, ncurses +{ lib, stdenv, fetchFromGitHub, fetchpatch, readline, ncurses , autoreconfHook, pkg-config, gettext }: stdenv.mkDerivation rec { @@ -12,6 +12,16 @@ stdenv.mkDerivation rec { sha256 = "1chmfdi1dwg3sarzd01nqa82g65q7wdr6hrnj96l75vikwsg986y"; }; + patches = [ + # pull pending upstream inclusion fix for ncurses-6.3: + # https://github.com/dvorka/hstr/pull/435 + (fetchpatch { + name = "ncurses-6.3.patch"; + url = "https://github.com/dvorka/hstr/commit/7fbd852c464ae3cfcd2f4fed9c62a21fb84c5439.patch"; + sha256 = "15f0ja4bsh4jnchcg0ray8ijpdraag7k07ss87a6ymfs1rg6i0jr"; + }) + ]; + nativeBuildInputs = [ autoreconfHook pkg-config ]; buildInputs = [ readline ncurses gettext ]; diff --git a/pkgs/applications/misc/jigdo/default.nix b/pkgs/applications/misc/jigdo/default.nix index b4573a816359..9e07193cdb7f 100644 --- a/pkgs/applications/misc/jigdo/default.nix +++ b/pkgs/applications/misc/jigdo/default.nix @@ -1,11 +1,11 @@ { lib, stdenv, fetchurl, db, gtk2, bzip2 }: -stdenv.mkDerivation { - name = "jigdo-0.7.3"; +stdenv.mkDerivation rec { + pname = "jigdo"; + version = "0.7.3"; - # Debian sources src = fetchurl { - url = "http://ftp.de.debian.org/debian/pool/main/j/jigdo/jigdo_0.7.3.orig.tar.gz"; + url = "http://ftp.de.debian.org/debian/pool/main/j/jigdo/jigdo_${version}.orig.tar.gz"; sha256 = "1qvqzgzb0dzq82fa1ffs6hyij655rajnfwkljk1y0mnkygnha1xv"; }; @@ -21,10 +21,11 @@ stdenv.mkDerivation { configureFlags = [ "--without-libdb" ]; - meta = { + meta = with lib; { description = "Download utility that can fetch files from several sources simultaneously"; - homepage = "http://atterer.net/jigdo/"; - license = lib.licenses.gpl2; - platforms = lib.platforms.unix; + homepage = "http://atterer.org/jigdo/"; + license = licenses.gpl2Only; + platforms = platforms.unix; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/applications/misc/joplin-desktop/default.nix b/pkgs/applications/misc/joplin-desktop/default.nix index 4701fe0b54f3..9d3b751fcd6a 100644 --- a/pkgs/applications/misc/joplin-desktop/default.nix +++ b/pkgs/applications/misc/joplin-desktop/default.nix @@ -2,7 +2,7 @@ let pname = "joplin-desktop"; - version = "2.4.6"; + version = "2.5.12"; name = "${pname}-${version}"; inherit (stdenv.hostPlatform) system; @@ -16,8 +16,8 @@ let src = fetchurl { url = "https://github.com/laurent22/joplin/releases/download/v${version}/Joplin-${version}.${suffix}"; sha256 = { - x86_64-linux = "sha256-BMpRWtfx5fXEJy3hp/+q86sd+Yd/QPJbSqi2nWE2dcQ="; - x86_64-darwin = "sha256-4UNKdoGtQSN5/m+xQZrY77ZE5A7jvpDOUCRvwrS5e6g="; + x86_64-linux = "sha256-/S/paqMKVerSQFjA4wQ9fLV0WaqKm4CzQfy+0OdH7c8="; + x86_64-darwin = "sha256-5eKTfZRpW7IYwFt8TeJiytrwEpiHBgN4k9kth+Lh0Bo="; }.${system} or throwSystem; }; diff --git a/pkgs/applications/misc/koreader/default.nix b/pkgs/applications/misc/koreader/default.nix index af66e2282b40..3d11162241eb 100644 --- a/pkgs/applications/misc/koreader/default.nix +++ b/pkgs/applications/misc/koreader/default.nix @@ -13,12 +13,12 @@ let font-droid = nerdfonts.override { fonts = [ "DroidSansMono" ]; }; in stdenv.mkDerivation rec { pname = "koreader"; - version = "2021.09"; + version = "2021.10.1"; src = fetchurl { url = "https://github.com/koreader/koreader/releases/download/v${version}/koreader-${version}-amd64.deb"; - sha256 = "1q2mbmczx2y5ylriq4k3lbjlpw4pwfq2vvcx06ymax31fsrvix84"; + sha256 = "sha256-UpDwexBfjlne/uNMTtNjIyZb3TDMYFeDvtwtTFARovw="; }; sourceRoot = "."; diff --git a/pkgs/applications/misc/lavalauncher/default.nix b/pkgs/applications/misc/lavalauncher/default.nix index 533d3757a6ef..f6071978b867 100644 --- a/pkgs/applications/misc/lavalauncher/default.nix +++ b/pkgs/applications/misc/lavalauncher/default.nix @@ -7,24 +7,26 @@ , scdoc , cairo , librsvg +, libxkbcommon , wayland , wayland-protocols }: stdenv.mkDerivation rec { pname = "lavalauncher"; - version = "2.0.0"; + version = "2.1.1"; src = fetchgit { url = "https://git.sr.ht/~leon_plickat/lavalauncher"; rev = "v${version}"; - sha256 = "MXREycR4ZetTe71ZwEqyozMJN9OLTDvU0W4J8qkTQAs="; + sha256 = "hobhZ6s9m2xCdAurdj0EF1BeS88j96133zu+2jb1FMM="; }; nativeBuildInputs = [ meson ninja pkg-config scdoc ]; buildInputs = [ cairo librsvg + libxkbcommon wayland wayland-protocols ]; diff --git a/pkgs/applications/misc/lifelines/default.nix b/pkgs/applications/misc/lifelines/default.nix index 50827355cac0..f7f6c5fa2a38 100644 --- a/pkgs/applications/misc/lifelines/default.nix +++ b/pkgs/applications/misc/lifelines/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchFromGitHub, gettext, libiconv, bison, ncurses, perl, autoreconfHook }: +{ lib, stdenv, fetchFromGitHub, fetchpatch, gettext, libiconv, bison, ncurses, perl, autoreconfHook }: stdenv.mkDerivation rec { pname = "lifelines"; @@ -11,6 +11,16 @@ stdenv.mkDerivation rec { sha256 = "1agszzlmkxmznpc1xj0vzxkskrcfagfjvqsdyw1yp5yg6bsq272y"; }; + patches = [ + # Fix pending upstream inclusion for ncurses-6.3 support: + # https://github.com/lifelines/lifelines/pull/437 + (fetchpatch { + name = "ncurses-6.3.patch"; + url = "https://github.com/lifelines/lifelines/commit/e04ce2794d458c440787c191877fbbc0784447bd.patch"; + sha256 = "1smnz4z5hfjas79bfvlnpw9x8199a5g0p9cvhf17zpcnz1432kg7"; + }) + ]; + buildInputs = [ gettext libiconv diff --git a/pkgs/applications/misc/limesctl/default.nix b/pkgs/applications/misc/limesctl/default.nix index 24a16eeb8b1f..d7f0624ad3f3 100644 --- a/pkgs/applications/misc/limesctl/default.nix +++ b/pkgs/applications/misc/limesctl/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "limesctl"; - version = "2.0.0"; + version = "2.0.1"; src = fetchFromGitHub { owner = "sapcc"; repo = pname; rev = "v${version}"; - sha256 = "sha256-fhmGVgJ/4xnf6pe8aXxx1KEmLInxm54my+qgSU4Vc/k="; + sha256 = "sha256-E6LwNiCykBqjkifUSi6oBWqCEhkRO+03HSKn4p45kh0="; }; vendorSha256 = "sha256-9MlymY5gM9/K2+7/yTa3WaSIfDJ4gRf33vSCwdIpNqw="; diff --git a/pkgs/applications/misc/loxodo/default.nix b/pkgs/applications/misc/loxodo/default.nix index 65f9a9f0f17e..2e7a1365f4d2 100644 --- a/pkgs/applications/misc/loxodo/default.nix +++ b/pkgs/applications/misc/loxodo/default.nix @@ -1,18 +1,17 @@ -{ lib, python27Packages, fetchgit }: -let - py = python27Packages; - python = py.python; -in -py.buildPythonApplication { - name = "loxodo-0.20150124"; +{ lib, python2, fetchFromGitHub }: - src = fetchgit { - url = "https://github.com/sommer/loxodo.git"; +python2.pkgs.buildPythonApplication { + pname = "loxodo"; + version = "unstable-2015-01-24"; + + src = fetchFromGitHub { + owner = "sommer"; + repo = "loxodo"; rev = "6c56efb4511fd6f645ad0f8eb3deafc8071c5795"; sha256 = "1cg0dfcv57ps54f1a0ksib7hgkrbdi9q699w302xyyfyvjcb5dd2"; }; - propagatedBuildInputs = with py; [ wxPython ]; + propagatedBuildInputs = with python2.pkgs; [ wxPython ]; postInstall = '' mv $out/bin/loxodo.py $out/bin/loxodo @@ -21,7 +20,7 @@ py.buildPythonApplication { [Desktop Entry] Type=Application Exec=$out/bin/loxodo - Icon=$out/lib/${python.libPrefix}/site-packages/resources/loxodo-icon.png + Icon=$out/lib/${python2.libPrefix}/site-packages/resources/loxodo-icon.png Name=Loxodo GenericName=Password Vault Categories=Application;Other; @@ -33,5 +32,6 @@ py.buildPythonApplication { homepage = "https://www.christoph-sommer.de/loxodo/"; license = licenses.gpl2Plus; platforms = platforms.linux; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/applications/misc/mdzk/default.nix b/pkgs/applications/misc/mdzk/default.nix index fb1923d932ea..17365e009bc0 100644 --- a/pkgs/applications/misc/mdzk/default.nix +++ b/pkgs/applications/misc/mdzk/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "mdzk"; - version = "0.4.2"; + version = "0.4.3"; src = fetchFromGitHub { owner = "mdzk-rs"; repo = "mdzk"; rev = version; - sha256 = "sha256-yz8lLFAP2/16fixknqGziyrUJKs3Qo1+whV82kUPuAE="; + sha256 = "sha256-VUvV1XA9Bd3ugYHcKOcAQLUt0etxS/Cw2EgnFGxX0z0="; }; - cargoSha256 = "sha256-TGNzi8fMU7RhX2SJyxpYfJLgGYxpO/XkmDXzMdlX/2o="; + cargoSha256 = "sha256-lZ4fc/94ESlhpfa5ylg45oZNeaF1mZPxQUSLZrl2V3o="; buildInputs = lib.optionals stdenv.isDarwin [ CoreServices ]; diff --git a/pkgs/applications/misc/mencal/default.nix b/pkgs/applications/misc/mencal/default.nix index 806d6a53cfaa..c4973b275534 100644 --- a/pkgs/applications/misc/mencal/default.nix +++ b/pkgs/applications/misc/mencal/default.nix @@ -1,17 +1,18 @@ { lib, stdenv, fetchurl, perl }: stdenv.mkDerivation rec { - name = "mencal-3.0"; + pname = "mencal"; + version = "3.0"; src = fetchurl { - url = "http://kyberdigi.cz/projects/mencal/files/${name}.tar.gz"; + url = "http://kyberdigi.cz/projects/mencal/files/mencal-${version}.tar.gz"; sha256 = "9328d0b2f3f57847e8753c5184531f4832be7123d1b6623afdff892074c03080"; }; installPhase = '' - mkdir -p $out/bin - cp mencal $out/bin/ - ''; + mkdir -p $out/bin + cp mencal $out/bin/ + ''; buildInputs = [ perl ]; diff --git a/pkgs/applications/misc/metadata-cleaner/default.nix b/pkgs/applications/misc/metadata-cleaner/default.nix index 46da03b8a882..d869164f6609 100644 --- a/pkgs/applications/misc/metadata-cleaner/default.nix +++ b/pkgs/applications/misc/metadata-cleaner/default.nix @@ -5,8 +5,9 @@ , desktop-file-utils , glib , gobject-introspection -, gtk3 -, libhandy +, gtk4 +, itstool +, libadwaita , librsvg , meson , ninja @@ -17,7 +18,7 @@ python3.pkgs.buildPythonApplication rec { pname = "metadata-cleaner"; - version = "1.0.7"; + version = "2.0.1"; format = "other"; @@ -25,14 +26,15 @@ python3.pkgs.buildPythonApplication rec { owner = "rmnvgr"; repo = "metadata-cleaner"; rev = "v${version}"; - sha256 = "sha256-HlP/QahVFCAct06pKanjozFqeyTdHoHanIemq5ID2CQ="; + sha256 = "sha256-iTKs3DEZSzqRARXJKPPygvCS5JNUMbQBkfjacwd168Y="; }; nativeBuildInputs = [ appstream desktop-file-utils glib - gtk3 + gtk4 + itstool meson ninja pkg-config @@ -41,8 +43,8 @@ python3.pkgs.buildPythonApplication rec { buildInputs = [ gobject-introspection - gtk3 - libhandy + gtk4 + libadwaita librsvg poppler_gi ]; diff --git a/pkgs/applications/misc/metar/default.nix b/pkgs/applications/misc/metar/default.nix index d9e1922f1c48..07ac41f7281e 100644 --- a/pkgs/applications/misc/metar/default.nix +++ b/pkgs/applications/misc/metar/default.nix @@ -1,10 +1,12 @@ -{ lib, stdenv, fetchgit, curl }: +{ lib, stdenv, fetchFromGitHub, curl }: stdenv.mkDerivation { - name = "metar-20161013.1"; + pname = "metar"; + version = "unstable-2017-02-17"; - src = fetchgit { - url = "https://github.com/keesL/metar.git"; + src = fetchFromGitHub { + owner = "keesL"; + repo = "metar"; rev = "20e9ca69faea330f6c2493b6829131c24cb55147"; sha256 = "1fgrlnpasqf1ihh9y6zy6mzzybqx0lxvh7gmv03rjdb55dr42dxj"; }; @@ -13,8 +15,6 @@ stdenv.mkDerivation { meta = with lib; { homepage = "https://github.com/keesL/metar"; - license = licenses.gpl2; - maintainers = [ maintainers.zalakain ]; description = "Downloads weather reports and optionally decodes them"; longDescription = '' METAR reports are meteorogical weather reports for aviation. Metar is a small @@ -26,5 +26,7 @@ stdenv.mkDerivation { more work in the area of clouds need to be done, as support for Cumulus or Cumulunimbus is not yet decoded. ''; + license = licenses.gpl2Plus; + maintainers = with maintainers; [ zalakain ]; }; } diff --git a/pkgs/applications/misc/minder/default.nix b/pkgs/applications/misc/minder/default.nix index 607eeb5eaa3c..63840b3f0b29 100644 --- a/pkgs/applications/misc/minder/default.nix +++ b/pkgs/applications/misc/minder/default.nix @@ -75,5 +75,6 @@ stdenv.mkDerivation rec { license = licenses.gpl3Plus; platforms = platforms.linux; maintainers = with maintainers; [ dtzWill ] ++ teams.pantheon.members; + mainProgram = "com.github.phase1geo.minder"; }; } diff --git a/pkgs/applications/misc/mkgmap/default.nix b/pkgs/applications/misc/mkgmap/default.nix index c88ac932e4f9..29c0dce205d0 100644 --- a/pkgs/applications/misc/mkgmap/default.nix +++ b/pkgs/applications/misc/mkgmap/default.nix @@ -14,11 +14,11 @@ let in stdenv.mkDerivation rec { pname = "mkgmap"; - version = "4810"; + version = "4813"; src = fetchurl { url = "https://www.mkgmap.org.uk/download/mkgmap-r${version}-src.tar.gz"; - sha256 = "j21WTEu+MTmnFrRH5B8Eb1tS2elFR715R8jhgKZ5Gmw="; + sha256 = "Zx3j3ITsL3eOMVYxKLnfzwPMkr+BQ+soK+zhzYbnnak="; }; patches = [ diff --git a/pkgs/applications/misc/mkgmap/deps.nix b/pkgs/applications/misc/mkgmap/deps.nix index 22b5410d6bbc..68cd5a79fe72 100644 --- a/pkgs/applications/misc/mkgmap/deps.nix +++ b/pkgs/applications/misc/mkgmap/deps.nix @@ -9,23 +9,23 @@ sha256 = "0zb4pqkwly5z30ww66qhhasdhdrzwmrw00347yrbgyk2ii4wjad3"; }; protobuf = fetchurl { - url = "https://repo1.maven.org/maven2/com/google/protobuf/protobuf-java/2.5.0/protobuf-java-2.5.0.jar"; + url = "mirror://maven/com/google/protobuf/protobuf-java/2.5.0/protobuf-java-2.5.0.jar"; sha256 = "0x6c4pbsizvk3lm6nxcgi1g2iqgrxcna1ip74lbn01f0fm2wdhg0"; }; xpp3 = fetchurl { - url = "https://repo1.maven.org/maven2/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar"; + url = "mirror://maven/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar"; sha256 = "1f9ifnxxj295xb1494jycbfm76476xm5l52p7608gf0v91d3jh83"; }; jaxb-api = fetchurl { - url = "https://repo1.maven.org/maven2/javax/xml/bind/jaxb-api/2.3.0/jaxb-api-2.3.0.jar"; + url = "mirror://maven/javax/xml/bind/jaxb-api/2.3.0/jaxb-api-2.3.0.jar"; sha256 = "00rxpc0m30d3jc572ni01ryxq8gcbnr955xsabrijg9pknc0fc48"; }; junit = fetchurl { - url = "https://repo1.maven.org/maven2/junit/junit/4.11/junit-4.11.jar"; + url = "mirror://maven/junit/junit/4.11/junit-4.11.jar"; sha256 = "1zh6klzv8w30dx7jg6pkhllk4587av4znflzhxz8x97c7rhf3a4h"; }; hamcrest-core = fetchurl { - url = "https://repo1.maven.org/maven2/org/hamcrest/hamcrest-core/1.3/hamcrest-core-1.3.jar"; + url = "mirror://maven/org/hamcrest/hamcrest-core/1.3/hamcrest-core-1.3.jar"; sha256 = "1sfqqi8p5957hs9yik44an3lwpv8ln2a6sh9gbgli4vkx68yzzb6"; }; } diff --git a/pkgs/applications/misc/mkgmap/splitter/default.nix b/pkgs/applications/misc/mkgmap/splitter/default.nix index 1bd8b5899240..1684003fb760 100644 --- a/pkgs/applications/misc/mkgmap/splitter/default.nix +++ b/pkgs/applications/misc/mkgmap/splitter/default.nix @@ -13,11 +13,11 @@ let in stdenv.mkDerivation rec { pname = "splitter"; - version = "642"; + version = "643"; src = fetchurl { url = "https://www.mkgmap.org.uk/download/splitter-r${version}-src.tar.gz"; - sha256 = "zMuMutkk0RsbEH+5undcMmZRCGYJ7LRvdK1pxAgQRYk="; + sha256 = "gyMCQAKnP4FDcHEgJiiftKhBEG9N92etpwKBnmIbzhU="; }; patches = [ diff --git a/pkgs/applications/misc/mob/default.nix b/pkgs/applications/misc/mob/default.nix index e9e0559b0d08..f558e520da86 100644 --- a/pkgs/applications/misc/mob/default.nix +++ b/pkgs/applications/misc/mob/default.nix @@ -2,14 +2,14 @@ buildGoPackage rec { pname = "mob"; - version = "1.12.0"; + version = "2.0.0"; goPackagePath = "github.com/remotemobprogramming/mob"; src = fetchFromGitHub { rev = "v${version}"; owner = "remotemobprogramming"; repo = pname; - sha256 = "sha256-5hvuaKlaWrB8nEeHytnn4ywciLbOSoXdBdc3K/PqMG8="; + sha256 = "sha256-sSeXL+eHroxDr+91rwmUJ+WwDgefZgJBRTxy4wo6DDM="; }; meta = with lib; { diff --git a/pkgs/applications/misc/mpvc/default.nix b/pkgs/applications/misc/mpvc/default.nix index 69aca239d311..bfdfeebae271 100644 --- a/pkgs/applications/misc/mpvc/default.nix +++ b/pkgs/applications/misc/mpvc/default.nix @@ -1,7 +1,8 @@ { lib, stdenv, socat, fetchFromGitHub, makeWrapper }: stdenv.mkDerivation { - name = "mpvc-unstable-2017-03-18"; + pname = "mpvc"; + version = "unstable-2017-03-18"; src = fetchFromGitHub { owner = "wildefyr"; diff --git a/pkgs/applications/misc/navipowm/default.nix b/pkgs/applications/misc/navipowm/default.nix index 0727f8672910..6527a4f57411 100644 --- a/pkgs/applications/misc/navipowm/default.nix +++ b/pkgs/applications/misc/navipowm/default.nix @@ -1,9 +1,10 @@ { lib, stdenv, fetchurl, qt4, qmake4Hook }: stdenv.mkDerivation rec { - name = "navipowm-0.2.4"; + pname = "navipowm"; + version = "0.2.4"; src = fetchurl { - url = "mirror://sourceforge/navipowm/NaviPOWM-0.2.4.tar.gz"; + url = "mirror://sourceforge/navipowm/NaviPOWM-${version}.tar.gz"; sha256 = "1kdih8kwpgcgfh6l6njkr9gq2j5hv39xvzmzgvhip553kn6bss7b"; }; @@ -12,10 +13,10 @@ stdenv.mkDerivation rec { ''; installPhase = '' - mkdir -p $out/bin $out/share/${name}/Icons + mkdir -p $out/bin $out/share/navipowm-${version}/Icons cp bin/NaviPOWM $out/bin - cp ../../common/Config/navipowm.ini $out/share/${name} - cp ../../common/Images/* $out/share/${name} + cp ../../common/Config/navipowm.ini $out/share/navipowm-${version} + cp ../../common/Images/* $out/share/navipowm-${version} ''; buildInputs = [ qt4 ]; diff --git a/pkgs/applications/misc/nerd-font-patcher/default.nix b/pkgs/applications/misc/nerd-font-patcher/default.nix new file mode 100644 index 000000000000..6807cd9024f5 --- /dev/null +++ b/pkgs/applications/misc/nerd-font-patcher/default.nix @@ -0,0 +1,41 @@ +{ python3Packages, lib, fetchFromGitHub }: + +python3Packages.buildPythonApplication rec { + pname = "nerd-font-patcher"; + version = "2.1.0"; + + # The size of the nerd fonts repository is bigger than 2GB, because it + # contains a lot of fonts and the patcher. + # until https://github.com/ryanoasis/nerd-fonts/issues/484 is not fixed, + # we download the patcher from an alternative repository + src = fetchFromGitHub { + owner = "betaboon"; + repo = "nerd-fonts-patcher"; + rev = "180684d7a190f75fd2fea7ca1b26c6540db8d3c0"; + sha256 = "sha256-FAbdLf0XiUXGltAgmq33Wqv6PFo/5qCv62UxXnj3SgI="; + }; + + propagatedBuildInputs = with python3Packages; [ fontforge ]; + + format = "other"; + + postPatch = '' + sed -i font-patcher \ + -e 's,__dir__ + "/src,"'$out'/share/${pname},' + ''; + + dontBuild = true; + + installPhase = '' + mkdir -p $out/bin $out/share/${pname} + install -Dm755 font-patcher $out/bin/${pname} + cp -ra src/glyphs $out/share/${pname} + ''; + + meta = with lib; { + description = "Font patcher to generate Nerd font"; + homepage = "https://nerdfonts.com/"; + license = licenses.mit; + maintainers = with maintainers; [ ck3d ]; + }; +} diff --git a/pkgs/applications/misc/notejot/default.nix b/pkgs/applications/misc/notejot/default.nix index 435bbda24d03..aad182bd1875 100644 --- a/pkgs/applications/misc/notejot/default.nix +++ b/pkgs/applications/misc/notejot/default.nix @@ -64,5 +64,6 @@ stdenv.mkDerivation rec { license = licenses.gpl3Plus; maintainers = with maintainers; [ AndersonTorres ] ++ teams.pantheon.members; platforms = platforms.linux; + mainProgram = "io.github.lainsce.Notejot"; }; } diff --git a/pkgs/applications/misc/numberstation/default.nix b/pkgs/applications/misc/numberstation/default.nix index 9809a2a62058..76a583fc8fdf 100644 --- a/pkgs/applications/misc/numberstation/default.nix +++ b/pkgs/applications/misc/numberstation/default.nix @@ -15,7 +15,7 @@ python3.pkgs.buildPythonApplication rec { pname = "numberstation"; - version = "0.5.0"; + version = "1.0.0"; format = "other"; @@ -23,7 +23,7 @@ python3.pkgs.buildPythonApplication rec { owner = "~martijnbraam"; repo = "numberstation"; rev = version; - sha256 = "1hh66i0rfm85a97iajxlh965wk68hn0kkfgi9cljjkqf98xiy0bb"; + sha256 = "1mr0rmm7hcyn8qr485h1ihbb5f581sab4fgvs7lhwy9lxsqk0r0l"; }; postPatch = '' diff --git a/pkgs/applications/misc/nwg-launchers/default.nix b/pkgs/applications/misc/nwg-launchers/default.nix index 3f82db124229..24deebce1781 100644 --- a/pkgs/applications/misc/nwg-launchers/default.nix +++ b/pkgs/applications/misc/nwg-launchers/default.nix @@ -13,13 +13,13 @@ stdenv.mkDerivation rec { pname = "nwg-launchers"; - version = "0.5.0"; + version = "0.6.3"; src = fetchFromGitHub { owner = "nwg-piotr"; repo = pname; rev = "v${version}"; - sha256 = "sha256-ZtlAs7McVQKH626h2iOhjpVaiEHeaqs9ncZ6/KnGibg="; + sha256 = "sha256-QWDYy0TBxoYxfRAOtAEVM8wsPUi2SnzMXsu38guAURU="; }; nativeBuildInputs = [ diff --git a/pkgs/applications/misc/nwg-wrapper/default.nix b/pkgs/applications/misc/nwg-wrapper/default.nix index 043ea23e3a73..770227186ff6 100644 --- a/pkgs/applications/misc/nwg-wrapper/default.nix +++ b/pkgs/applications/misc/nwg-wrapper/default.nix @@ -2,13 +2,13 @@ python3Packages.buildPythonPackage rec { pname = "nwg-wrapper"; - version = "0.0.2"; + version = "0.1.0"; src = fetchFromGitHub { owner = "nwg-piotr"; repo = pname; rev = "v${version}"; - sha256 = "sha256-LkAB0MrwQxP3X7glfSnI0GZMv8tjaeSOz7WSOW33wuo="; + sha256 = "0xkxyfbj8zljx7k5wbniz3x9jg0l4jnbbjv8hy5y5p4l10m0vpjs"; }; nativeBuildInputs = [ gobject-introspection wrapGAppsHook ]; diff --git a/pkgs/applications/misc/openbrf/default.nix b/pkgs/applications/misc/openbrf/default.nix index 663a7bf43eae..c0fb436b7f8a 100644 --- a/pkgs/applications/misc/openbrf/default.nix +++ b/pkgs/applications/misc/openbrf/default.nix @@ -2,7 +2,8 @@ mkDerivation { - name = "openbrf-unstable-2016-01-09"; + pname = "openbrf"; + version = "unstable-2016-01-09"; src = fetchFromGitHub { owner = "cfcohen"; diff --git a/pkgs/applications/misc/pass-secret-service/default.nix b/pkgs/applications/misc/pass-secret-service/default.nix index 932fa588d271..12f8935797c8 100644 --- a/pkgs/applications/misc/pass-secret-service/default.nix +++ b/pkgs/applications/misc/pass-secret-service/default.nix @@ -19,9 +19,8 @@ python3.pkgs.buildPythonApplication rec { # /etc/ in check phase. postPatch = '' substituteInPlace Makefile \ - --replace \ - "dbus-run-session" \ - "dbus-run-session --config-file=${dbus}/share/dbus-1/session.conf" + --replace "dbus-run-session" "dbus-run-session --config-file=${dbus}/share/dbus-1/session.conf" \ + --replace '-p $(relpassstore)' '-p $(PASSWORD_STORE_DIR)' ''; propagatedBuildInputs = with python3.pkgs; [ diff --git a/pkgs/applications/misc/pcmanfm/default.nix b/pkgs/applications/misc/pcmanfm/default.nix index a8b407dd7b5d..deb9a98a517c 100644 --- a/pkgs/applications/misc/pcmanfm/default.nix +++ b/pkgs/applications/misc/pcmanfm/default.nix @@ -1,5 +1,18 @@ -{ lib, stdenv, fetchurl, glib, intltool, libfm, libX11, pango, pkg-config -, wrapGAppsHook, gnome, withGtk3 ? true, gtk2, gtk3 }: +{ lib +, stdenv +, fetchurl +, glib +, intltool +, libfm +, libX11 +, pango +, pkg-config +, wrapGAppsHook +, gnome +, withGtk3 ? true +, gtk2 +, gtk3 +}: let libfm' = libfm.override { inherit withGtk3; }; @@ -7,9 +20,11 @@ let inherit (lib) optional; in stdenv.mkDerivation rec { - name = "pcmanfm-1.3.2"; + pname = "pcmanfm"; + version = "1.3.2"; + src = fetchurl { - url = "mirror://sourceforge/pcmanfm/${name}.tar.xz"; + url = "mirror://sourceforge/pcmanfm/pcmanfm-${version}.tar.xz"; sha256 = "sha256-FMt7JHSTxMzmX7tZAmEeOtAKeocPvB5QrcUEKMUUDPc="; }; diff --git a/pkgs/applications/misc/pdfsam-basic/default.nix b/pkgs/applications/misc/pdfsam-basic/default.nix index fac17c978db9..9aed6daa5c31 100644 --- a/pkgs/applications/misc/pdfsam-basic/default.nix +++ b/pkgs/applications/misc/pdfsam-basic/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "pdfsam-basic"; - version = "4.2.6"; + version = "4.2.7"; src = fetchurl { url = "https://github.com/torakiki/pdfsam/releases/download/v${version}/pdfsam_${version}-1_amd64.deb"; - sha256 = "sha256-H8vFbQHFTO7blTJyfaEuyVUIljhfFautIrXV73zmBeI="; + sha256 = "sha256-PVG4KZX6KxkrooywgEmqOItyLt5hGs+b/KCaguduGyc="; }; unpackPhase = '' diff --git a/pkgs/applications/misc/pinfo/default.nix b/pkgs/applications/misc/pinfo/default.nix index b0fc64a1a5e9..179af6ca87dc 100644 --- a/pkgs/applications/misc/pinfo/default.nix +++ b/pkgs/applications/misc/pinfo/default.nix @@ -1,6 +1,7 @@ { lib , autoreconfHook , fetchFromGitHub +, fetchpatch , gettext , ncurses , readline @@ -19,6 +20,31 @@ stdenv.mkDerivation rec { sha256 = "173d2p22irwiabvr4z6qvr6zpr6ysfkhmadjlyhyiwd7z62larvy"; }; + patches = [ + # Pull upstream fix for -fno-common toolchains + (fetchpatch { + name = "fno-common.patch"; + url = "https://github.com/baszoetekouw/pinfo/commit/16dba5978146b6d3a540ac7c8f415eda49280847.patch"; + sha256 = "148fm32chvq8x9ayq9cnhgszh10g5v0cv0xph67fa7sp341p09wy"; + }) + + # Fix pending upstream inclusion for build on ncurses-6.3: + # https://github.com/baszoetekouw/pinfo/pull/27 + (fetchpatch { + name = "ncurses-6.3.patch"; + url = "https://github.com/baszoetekouw/pinfo/commit/fc67ceacd81f0c74fcab85447c23a532ae482827.patch"; + sha256 = "08phmng8vgfqjjazys05acpd5gh110malhw3sx29dg86nsrg2khs"; + }) + + # Fix pending upstream inclusion for build on gcc-11: + # https://github.com/baszoetekouw/pinfo/pull/27 + (fetchpatch { + name = "gcc-11.patch"; + url = "https://github.com/baszoetekouw/pinfo/commit/ab604fdb67296dad27f3a25f3c9aabdd2fb8c3fa.patch"; + sha256 = "09g8msgan2x48hxcbm7l6j3av6n8i0bsd4g0vf5xd8bxwzynb13m"; + }) + ]; + nativeBuildInputs = [ autoreconfHook ]; diff --git a/pkgs/applications/misc/pipr/default.nix b/pkgs/applications/misc/pipr/default.nix index 96627f5cccb5..2f5ba3e6d9cb 100644 --- a/pkgs/applications/misc/pipr/default.nix +++ b/pkgs/applications/misc/pipr/default.nix @@ -7,16 +7,16 @@ rustPlatform.buildRustPackage rec { pname = "pipr"; - version = "0.0.15"; + version = "0.0.16"; src = fetchFromGitHub { owner = "ElKowar"; repo = pname; rev = "v${version}"; - sha256 = "1pbj198nqi27kavz9bm31a3h7h70by6l00046x09yf9n8qjpp01w"; + sha256 = "sha256-6jtUNhib6iveuZ7qUKK7AllyMKFpZ8OUUaIieFqseY8="; }; - cargoSha256 = "05ryaxi479fxzdcl51r1xlqbiasfzxcxgvl4wnxync8qi8q2yqk0"; + cargoSha256 = "sha256-SLOiX8z8LuQ9VA/lg0lOhqs85MGs0vmeP74cS6sgghI="; nativeBuildInputs = [ makeWrapper ]; postFixup = '' diff --git a/pkgs/applications/misc/posterazor/default.nix b/pkgs/applications/misc/posterazor/default.nix index 602ac3e5e3b4..77e5e34899ea 100644 --- a/pkgs/applications/misc/posterazor/default.nix +++ b/pkgs/applications/misc/posterazor/default.nix @@ -1,10 +1,11 @@ { lib, stdenv, fetchurl, cmake, unzip, pkg-config, libXpm, fltk13, freeimage }: -stdenv.mkDerivation { - name = "posterazor-1.5.1"; +stdenv.mkDerivation rec { + pname = "posterazor"; + version = "1.5.1"; src = fetchurl { - url = "mirror://sourceforge/posterazor/1.5.1/PosteRazor-1.5.1-Source.zip"; + url = "mirror://sourceforge/posterazor/${version}/PosteRazor-${version}-Source.zip"; sha256 = "1dqpdk8zl0smdg4fganp3hxb943q40619qmxjlga9jhjc01s7fq5"; }; diff --git a/pkgs/applications/misc/procmail/default.nix b/pkgs/applications/misc/procmail/default.nix index 1244347cc53c..dafc73925b54 100644 --- a/pkgs/applications/misc/procmail/default.nix +++ b/pkgs/applications/misc/procmail/default.nix @@ -1,7 +1,13 @@ { lib, stdenv, fetchurl }: -stdenv.mkDerivation { - name = "procmail-3.22"; +stdenv.mkDerivation rec { + pname = "procmail"; + version = "3.22"; + + src = fetchurl { + url = "ftp://ftp.fu-berlin.de/pub/unix/mail/procmail/procmail-${version}.tar.gz"; + sha256 = "05z1c803n5cppkcq99vkyd5myff904lf9sdgynfqngfk9nrpaz08"; + }; patches = [ ./CVE-2014-3618.patch @@ -15,20 +21,16 @@ stdenv.mkDerivation { # getline is defined differently in glibc now. So rename it. # Without the .PHONY target "make install" won't install anything on Darwin. postPatch = '' - sed -e "s%^RM.*$%#%" -i Makefile - sed -e "s%^BASENAME.*%\BASENAME=$out%" -i Makefile - sed -e "s%^LIBS=.*%LIBS=-lm%" -i Makefile + sed -i Makefile \ + -e "s%^RM.*$%#%" \ + -e "s%^BASENAME.*%\BASENAME=$out%" \ + -e "s%^LIBS=.*%LIBS=-lm%" sed -e "s%getline%thisgetline%g" -i src/*.c src/*.h sed -e "3i\ -.PHONY: install -" -i Makefile + .PHONY: install + " -i Makefile ''; - src = fetchurl { - url = "ftp://ftp.fu-berlin.de/pub/unix/mail/procmail/procmail-3.22.tar.gz"; - sha256 = "05z1c803n5cppkcq99vkyd5myff904lf9sdgynfqngfk9nrpaz08"; - }; - meta = with lib; { description = "Mail processing and filtering utility"; homepage = "http://www.procmail.org/"; diff --git a/pkgs/applications/misc/ptask/default.nix b/pkgs/applications/misc/ptask/default.nix index b243f1941817..739003720447 100644 --- a/pkgs/applications/misc/ptask/default.nix +++ b/pkgs/applications/misc/ptask/default.nix @@ -1,10 +1,11 @@ { lib, stdenv, fetchurl, pkg-config, makeWrapper, gtk3, json_c, taskwarrior }: stdenv.mkDerivation rec { - name = "ptask-1.0.0"; + pname = "ptask"; + version = "1.0.0"; src = fetchurl { - url = "https://wpitchoune.net/ptask/files/${name}.tar.gz"; + url = "https://wpitchoune.net/ptask/files/ptask-${version}.tar.gz"; sha256 = "13nirr7b29bv3w2zc8zxphhmc9ayhs61i11jl4819nabk7vy1kdq"; }; diff --git a/pkgs/applications/misc/pueue/default.nix b/pkgs/applications/misc/pueue/default.nix index ac79f5be8460..4771666cc20a 100644 --- a/pkgs/applications/misc/pueue/default.nix +++ b/pkgs/applications/misc/pueue/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "pueue"; - version = "1.0.3"; + version = "1.0.4"; src = fetchFromGitHub { owner = "Nukesor"; repo = pname; rev = "v${version}"; - sha256 = "sha256-1iAXLs3O7EV7LfbXnajlDm75tQtanFInfNWZmnittlk="; + sha256 = "sha256-tNTKX++LrWwuVGdmAjvBStNYp4p1ai12JwJmozo1GV0="; }; - cargoSha256 = "sha256-x/qRNxZS++DBq5B9+/9eXN95QZN/FSLi+3XyJ06Y1hg="; + cargoSha256 = "sha256-t1d8K0v7kHPjH78lYCRCa4pyPCvyQT1kaQtVpoROZIE="; nativeBuildInputs = [ installShellFiles ]; diff --git a/pkgs/applications/misc/remarkable/rmapi/default.nix b/pkgs/applications/misc/remarkable/rmapi/default.nix index 11373756f8d0..8482f85d927a 100644 --- a/pkgs/applications/misc/remarkable/rmapi/default.nix +++ b/pkgs/applications/misc/remarkable/rmapi/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "rmapi"; - version = "0.0.15"; + version = "0.0.17"; src = fetchFromGitHub { owner = "juruen"; repo = "rmapi"; rev = "v${version}"; - sha256 = "sha256-ju54JSd3Zyye5YGLPEOkhY93ONh0b7eDSnvJlIawizE="; + sha256 = "sha256-KFoaZ0OAqwJm4tEUaEAGJ+70nHJUbxg0kvhm71mQB6E="; }; - vendorSha256 = "sha256-SE/0a8QUJsWoGwkSiZqYx1eXuOIL3avJujyg8iSdcBU="; + vendorSha256 = "sha256-gu+BU2tL/xZ7D6lZ1ueO/9IB9H3NNm4mloCZaGqZskU="; doCheck = false; diff --git a/pkgs/applications/misc/rofi-menugen/default.nix b/pkgs/applications/misc/rofi-menugen/default.nix index 6c9e5f6feff8..569ae6ef4cd8 100644 --- a/pkgs/applications/misc/rofi-menugen/default.nix +++ b/pkgs/applications/misc/rofi-menugen/default.nix @@ -1,24 +1,28 @@ { lib, stdenv, fetchFromGitHub, rofi, gnused }: stdenv.mkDerivation rec { - rev = "168efd2608fdb88b1aff3e0244bda8402169f207"; - name = "rofi-menugen-2015-12-28-${builtins.substring 0 7 rev}"; + pname = "rofi-menugen"; + version = "unstable-2015-12-28"; + src = fetchFromGitHub { owner = "octotep"; repo = "menugen"; - inherit rev; + rev = "168efd2608fdb88b1aff3e0244bda8402169f207"; sha256 = "09fk9i6crw772qlc5zld35pcff1jq4jcag0syial2q000fbpjx5m"; }; - patchPhase = '' + + postPatch = '' sed -i -e "s|menugenbase|$out/bin/rofi-menugenbase|" menugen sed -i -e "s|rofi |${rofi}/bin/rofi |" menugen sed -i -e "s|sed |${gnused}/bin/sed |" menugenbase ''; + installPhase = '' mkdir -p $out/bin cp menugen $out/bin/rofi-menugen cp menugenbase $out/bin/rofi-menugenbase ''; + meta = with lib; { description = "Generates menu based applications using rofi"; homepage = "https://github.com/octotep/menugen"; diff --git a/pkgs/applications/misc/sbagen/default.nix b/pkgs/applications/misc/sbagen/default.nix index 215447ed4e9f..4ddfa6f9cf28 100644 --- a/pkgs/applications/misc/sbagen/default.nix +++ b/pkgs/applications/misc/sbagen/default.nix @@ -1,10 +1,11 @@ { lib, stdenv, fetchurl }: stdenv.mkDerivation rec { - name = "sbagen-1.4.4"; + pname = "sbagen"; + version = "1.4.4"; src = fetchurl { - url = "https://uazu.net/sbagen/${name}.tgz"; + url = "https://uazu.net/sbagen/sbagen-${version}.tgz"; sha256 = "0w62yk1b0hq79kl0angma897yqa8p1ww0dwydf3zlwav333prkd2"; }; diff --git a/pkgs/applications/misc/seatd/default.nix b/pkgs/applications/misc/seatd/default.nix index 0565c8add3b8..e142ec47af99 100644 --- a/pkgs/applications/misc/seatd/default.nix +++ b/pkgs/applications/misc/seatd/default.nix @@ -10,13 +10,13 @@ stdenv.mkDerivation rec { pname = "seatd"; - version = "0.6.2"; + version = "0.6.3"; src = fetchFromSourcehut { owner = "~kennylevinsen"; repo = "seatd"; rev = version; - sha256 = "0c07i1nq0k60xmcsnr37ryqs7nzbg4qfq6fzbnzwbh1yhr8kypcm"; + sha256 = "sha256-LLRGi3IACqaIHExLhALnUeiPyUnlhAJzsMFE2p+QSp4="; }; outputs = [ "bin" "out" "dev" "man" ]; diff --git a/pkgs/applications/misc/sequeler/default.nix b/pkgs/applications/misc/sequeler/default.nix index 123e01fe798a..7ba7d15478a7 100644 --- a/pkgs/applications/misc/sequeler/default.nix +++ b/pkgs/applications/misc/sequeler/default.nix @@ -47,5 +47,6 @@ in stdenv.mkDerivation rec { license = licenses.gpl3; maintainers = with maintainers; [ etu ] ++ teams.pantheon.members; platforms = platforms.linux; + mainProgram = "com.github.alecaddd.sequeler"; }; } diff --git a/pkgs/applications/misc/sfm/default.nix b/pkgs/applications/misc/sfm/default.nix index 355c5915db27..800ea9419cbe 100644 --- a/pkgs/applications/misc/sfm/default.nix +++ b/pkgs/applications/misc/sfm/default.nix @@ -2,19 +2,21 @@ stdenv.mkDerivation rec { pname = "sfm"; - version = "0.3.1"; + version = "0.4"; src = fetchFromGitHub { owner = "afify"; repo = pname; rev = "v${version}"; - hash = "sha256-NmafUezwKK9bYPAWDNhegyjqkb4GY/i1WEtQ9puIaig="; + hash = "sha256-VwPux6n+azpR4qDkzZJia95pJJOaFDBBoz6/VwlC0zw="; }; configFile = lib.optionalString (conf!=null) (writeText "config.def.h" conf); postPatch = lib.optionalString (conf!=null) "cp ${configFile} config.def.h"; + makeFlags = [ "CC:=$(CC)" ]; + installFlags = [ "PREFIX=$(out)" ]; meta = with lib; { diff --git a/pkgs/applications/misc/slade/git.nix b/pkgs/applications/misc/slade/git.nix index f263c4ee74dd..124ae206c8ce 100644 --- a/pkgs/applications/misc/slade/git.nix +++ b/pkgs/applications/misc/slade/git.nix @@ -1,4 +1,6 @@ -{ lib, stdenv, fetchFromGitHub +{ lib +, stdenv +, fetchFromGitHub , cmake , pkg-config , wxGTK @@ -15,7 +17,8 @@ }: stdenv.mkDerivation { - name = "slade-git-3.2.0.2021.05.13"; + pname = "slade"; + version = "unstable-2021-05-13"; src = fetchFromGitHub { owner = "sirjuddington"; diff --git a/pkgs/applications/misc/smos/default.nix b/pkgs/applications/misc/smos/default.nix index aa2f53b5a2c7..1039deb43a11 100644 --- a/pkgs/applications/misc/smos/default.nix +++ b/pkgs/applications/misc/smos/default.nix @@ -19,7 +19,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "A comprehensive self-management system"; - homepage = https://smos.online; + homepage = "https://smos.online"; license = licenses.mit; maintainers = with maintainers; [ norfair ]; platforms = platforms.linux ++ platforms.darwin; diff --git a/pkgs/applications/misc/smpq/default.nix b/pkgs/applications/misc/smpq/default.nix new file mode 100644 index 000000000000..fd6b5937b8e5 --- /dev/null +++ b/pkgs/applications/misc/smpq/default.nix @@ -0,0 +1,26 @@ +{ lib, stdenv, fetchurl, cmake, StormLib }: + +stdenv.mkDerivation rec { + pname = "smpq"; + version = "1.6"; + + src = fetchurl { + url = "https://launchpad.net/smpq/trunk/${version}/+download/${pname}_${version}.orig.tar.gz"; + sha256 = "1jqq5x3b17jy66x3kkf5hs5l322dx2v14djxxrqrnqp8bn5drlmm"; + }; + + cmakeFlags = [ + "-DWITH_KDE=OFF" + ]; + + nativeBuildInputs = [ cmake ]; + buildInputs = [ StormLib ]; + + meta = with lib; { + description = "StormLib MPQ archiving utility"; + homepage = "https://launchpad.net/smpq"; + license = licenses.gpl3Only; + platforms = platforms.all; + maintainers = with maintainers; [ aanderse karolchmist ]; + }; +} diff --git a/pkgs/applications/misc/snapmaker-luban/default.nix b/pkgs/applications/misc/snapmaker-luban/default.nix new file mode 100644 index 000000000000..84ad34637f58 --- /dev/null +++ b/pkgs/applications/misc/snapmaker-luban/default.nix @@ -0,0 +1,88 @@ +{ lib, stdenv, autoPatchelfHook, makeDesktopItem, copyDesktopItems, wrapGAppsHook, fetchurl +, alsa-lib, at-spi2-atk, at-spi2-core, atk, cairo, cups +, gtk3, nss, glib, dbus, nspr, gdk-pixbuf +, libX11, libXScrnSaver, libXcomposite, libXcursor, libXdamage, libXext +, libXfixes, libXi, libXrandr, libXrender, libXtst, libxcb, pango +, gcc-unwrapped, udev +}: + +stdenv.mkDerivation rec { + pname = "snapmaker-luban"; + version = "4.0.3"; + + src = fetchurl { + url = "https://github.com/Snapmaker/Luban/releases/download/v${version}/snapmaker-luban-${version}-linux-x64.tar.gz"; + sha256 = "13qk7ssfawjaa5p4mnml4ndzzsqs26qpi76hc9qaipi74ss3jih4"; + }; + + nativeBuildInputs = [ + autoPatchelfHook + wrapGAppsHook + copyDesktopItems + ]; + + buildInputs = [ + alsa-lib + at-spi2-atk + at-spi2-core + cairo + cups + gcc-unwrapped + gtk3 + libXdamage + libX11 + libXScrnSaver + libXtst + libxcb + nspr + nss + ]; + + libPath = lib.makeLibraryPath [ + stdenv.cc.cc alsa-lib atk at-spi2-atk at-spi2-core cairo cups + gdk-pixbuf glib gtk3 libX11 libXcomposite + libXcursor libXdamage libXext libXfixes libXi libXrandr libXrender + libXtst nspr nss libxcb pango libXScrnSaver udev + ]; + + dontWrapGApps = true; + + installPhase = '' + runHook preInstall + + mkdir -p $out/{bin,opt,share/pixmaps}/ + mv * $out/opt/ + + patchelf --set-interpreter ${stdenv.cc.bintools.dynamicLinker} \ + $out/opt/snapmaker-luban + + wrapProgram $out/opt/snapmaker-luban \ + "''${gappsWrapperArgs[@]}" \ + --prefix XDG_DATA_DIRS : "${gtk3}/share/gsettings-schemas/${gtk3.name}/" \ + --prefix LD_LIBRARY_PATH : ${libPath}:$out/snapmaker-luban + + ln -s $out/opt/snapmaker-luban $out/bin/snapmaker-luban + ln -s $out/opt/resources/app/app/resources/images/snap-luban-logo-64x64.png $out/share/pixmaps/snapmaker-luban.png + + runHook postInstall + ''; + + desktopItems = [ + (makeDesktopItem { + name = pname; + exec = "snapmaker-luban"; + icon = "snapmaker-luban"; + desktopName = "Snapmaker Luban"; + genericName = meta.description; + categories = "Office;Printing;"; + }) + ]; + + meta = with lib; { + description = "Snapmaker Luban is an easy-to-use 3-in-1 software tailor-made for Snapmaker machines"; + homepage = "https://github.com/Snapmaker/Luban"; + license = licenses.gpl3; + maintainers = [ maintainers.simonkampe ]; + platforms = [ "x86_64-linux" ]; + }; +} diff --git a/pkgs/applications/misc/speedread/default.nix b/pkgs/applications/misc/speedread/default.nix index a7b9cb591a5e..451382cda373 100644 --- a/pkgs/applications/misc/speedread/default.nix +++ b/pkgs/applications/misc/speedread/default.nix @@ -1,12 +1,13 @@ { lib, stdenv, fetchFromGitHub, perl }: stdenv.mkDerivation rec { - name = "speedread-unstable-2016-09-21"; + pname = "speedread"; + version = "unstable-2016-09-21"; src = fetchFromGitHub { - owner = "pasky"; - repo = "speedread"; - rev = "93acfd61a1bf4482537ce5d71b9164b8446cb6bd"; + owner = "pasky"; + repo = "speedread"; + rev = "93acfd61a1bf4482537ce5d71b9164b8446cb6bd"; sha256 = "1h94jx3v18fdlc64lfmj2g5x63fjyqb8c56k5lihl7bva0xgdkxd"; }; diff --git a/pkgs/applications/misc/stag/default.nix b/pkgs/applications/misc/stag/default.nix index 03c90af23689..f9c91d28f14a 100644 --- a/pkgs/applications/misc/stag/default.nix +++ b/pkgs/applications/misc/stag/default.nix @@ -1,10 +1,12 @@ -{ lib, stdenv, fetchgit, curses }: +{ lib, stdenv, fetchFromGitHub, curses }: stdenv.mkDerivation { - name = "stag-1.0"; + pname = "stag"; + version = "1.0"; - src = fetchgit { - url = "https://github.com/seenaburns/stag.git"; + src = fetchFromGitHub { + owner = "seenaburns"; + repo = "stag"; rev = "90e2964959ea8242349250640d24cee3d1966ad6"; sha256 = "1yrzjhcwrxrxq5jj695wvpgb0pz047m88yq5n5ymkcw5qr78fy1v"; }; @@ -15,11 +17,11 @@ stdenv.mkDerivation { make install PREFIX=$out ''; - meta = { + meta = with lib; { homepage = "https://github.com/seenaburns/stag"; description = "Terminal streaming bar graph passed through stdin"; - license = lib.licenses.bsdOriginal; - maintainers = [ lib.maintainers.matthiasbeyer ]; - platforms = lib.platforms.unix; + license = licenses.bsdOriginal; + maintainers = with maintainers; [ matthiasbeyer ]; + platforms = platforms.unix; }; } diff --git a/pkgs/applications/misc/synergy/build-tests.patch b/pkgs/applications/misc/synergy/build-tests.patch deleted file mode 100644 index ab08195e794d..000000000000 --- a/pkgs/applications/misc/synergy/build-tests.patch +++ /dev/null @@ -1,97 +0,0 @@ -From 9c2278dad498b8e4040f30c80cf65b3a089ba218 Mon Sep 17 00:00:00 2001 -From: talyz <kim.lindberger@gmail.com> -Date: Fri, 14 Feb 2020 16:26:36 +0100 -Subject: [PATCH] Build tests again - -The tests were accidentally disabled in -688095d0a7d22704b5c3282bc68b41ceca42ab7e. Since then, the code has -drifted slightly: the synergy lib has been renamed from synergy to -synlib in 4263fd17177d7717b04ac6d6ec62efa2f657ed74 and the curl -dependency was dropped in 491bb2de000245a943b8298462c4a9d8f34c9a44. - -This reenables the tests, targets the right lib and removes the -obsolete test. ---- - src/CMakeLists.txt | 2 + - src/test/integtests/CMakeLists.txt | 2 +- - .../integtests/arch/ArchInternetTests.cpp | 37 ------------------- - src/test/unittests/CMakeLists.txt | 2 +- - 4 files changed, 4 insertions(+), 39 deletions(-) - delete mode 100644 src/test/integtests/arch/ArchInternetTests.cpp - -diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt -index ab63a066..fee080ab 100644 ---- a/src/CMakeLists.txt -+++ b/src/CMakeLists.txt -@@ -22,3 +22,5 @@ add_subdirectory(cmd) - if (SYNERGY_BUILD_LEGACY_GUI) - add_subdirectory(gui) - endif (SYNERGY_BUILD_LEGACY_GUI) -+ -+add_subdirectory(test) -diff --git a/src/test/integtests/CMakeLists.txt b/src/test/integtests/CMakeLists.txt -index f39968a3..096ba3d5 100644 ---- a/src/test/integtests/CMakeLists.txt -+++ b/src/test/integtests/CMakeLists.txt -@@ -68,4 +68,4 @@ endif() - - add_executable(integtests ${sources}) - target_link_libraries(integtests -- arch base client common io ipc mt net platform server synergy gtest gmock ${libs} ${OPENSSL_LIBS}) -+ arch base client common io ipc mt net platform server synlib gtest gmock ${libs} ${OPENSSL_LIBS}) -diff --git a/src/test/integtests/arch/ArchInternetTests.cpp b/src/test/integtests/arch/ArchInternetTests.cpp -deleted file mode 100644 -index 95823e9f..00000000 ---- a/src/test/integtests/arch/ArchInternetTests.cpp -+++ /dev/null -@@ -1,37 +0,0 @@ --/* -- * synergy -- mouse and keyboard sharing utility -- * Copyright (C) 2014-2016 Symless Ltd. -- * -- * This package is free software; you can redistribute it and/or -- * modify it under the terms of the GNU General Public License -- * found in the file LICENSE that should have accompanied this file. -- * -- * This package is distributed in the hope that it will be useful, -- * but WITHOUT ANY WARRANTY; without even the implied warranty of -- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -- * GNU General Public License for more details. -- * -- * You should have received a copy of the GNU General Public License -- * along with this program. If not, see <http://www.gnu.org/licenses/>. -- */ -- --#include "arch/Arch.h" -- --#include "test/global/gtest.h" -- --#define TEST_URL "https://symless.com/tests/?testString" --//#define TEST_URL "http://localhost/synergy/tests/?testString" -- --TEST(ArchInternetTests, get) --{ -- ARCH_INTERNET internet; -- String result = internet.get(TEST_URL); -- ASSERT_EQ("Hello world!", result); --} -- --TEST(ArchInternetTests, urlEncode) --{ -- ARCH_INTERNET internet; -- String result = internet.urlEncode("hello=+&world"); -- ASSERT_EQ("hello%3D%2B%26world", result); --} -diff --git a/src/test/unittests/CMakeLists.txt b/src/test/unittests/CMakeLists.txt -index 54131eb2..46307e90 100644 ---- a/src/test/unittests/CMakeLists.txt -+++ b/src/test/unittests/CMakeLists.txt -@@ -68,4 +68,4 @@ endif() - - add_executable(unittests ${sources}) - target_link_libraries(unittests -- arch base client server common io net platform server synergy mt ipc gtest gmock shared ${libs} ${OPENSSL_LIBS}) -+ arch base client server common io net platform server synlib mt ipc gtest gmock shared ${libs} ${OPENSSL_LIBS}) --- -2.25.0 - diff --git a/pkgs/applications/misc/synergy/default.nix b/pkgs/applications/misc/synergy/default.nix index 8d3cc8c30966..803456dc85f0 100644 --- a/pkgs/applications/misc/synergy/default.nix +++ b/pkgs/applications/misc/synergy/default.nix @@ -1,41 +1,90 @@ -{ stdenv, lib, fetchpatch, fetchFromGitHub, cmake, openssl, qttools -, ApplicationServices, Carbon, Cocoa, CoreServices, ScreenSaver -, xlibsWrapper, libX11, libXi, libXtst, libXrandr, xinput, avahi-compat -, withGUI ? true, wrapQtAppsHook }: +{ withGUI ? true +, stdenv +, lib +, fetchpatch +, fetchFromGitHub +, wrapQtAppsHook + +, cmake +, openssl +, pcre +, util-linux +, libselinux +, libsepol +, pkg-config +, gdk-pixbuf +, libnotify +, qttools +, xlibsWrapper +, libX11 +, libXi +, libXtst +, libXrandr +, xinput +, avahi-compat + +# macOS / darwin +, ApplicationServices +, Carbon +, Cocoa +, CoreServices +, ScreenSaver +}: stdenv.mkDerivation rec { pname = "synergy"; - version = "1.13.1.41"; + version = "1.14.1.32"; src = fetchFromGitHub { owner = "symless"; repo = "synergy-core"; rev = "${version}-stable"; fetchSubmodules = true; - sha256 = "1phg0szc9g018zxs5wbys4drzq1cdhyzajfg45l6a3fmi6qdi1kw"; + sha256 = "123p75rm22vb3prw1igh0yii2y4bvv7r18iykfvmnr41hh4w7z2p"; }; - patches = lib.optional stdenv.isDarwin ./macos_build_fix.patch; + patches = [ ./macos_build_fix.patch ]; postPatch = '' substituteInPlace src/gui/src/SslCertificate.cpp \ --replace 'kUnixOpenSslCommand[] = "openssl";' 'kUnixOpenSslCommand[] = "${openssl}/bin/openssl";' ''; - cmakeFlags = lib.optional (!withGUI) "-DSYNERGY_BUILD_LEGACY_GUI=OFF"; + cmakeFlags = lib.optionals (!withGUI) [ + "-DSYNERGY_BUILD_LEGACY_GUI=OFF" + ] ++ lib.optionals stdenv.isDarwin [ + "-DCMAKE_OSX_DEPLOYMENT_TARGET=10.09" + ]; + NIX_CFLAGS_COMPILE = lib.optionalString stdenv.isDarwin "-Wno-inconsistent-missing-override"; - nativeBuildInputs = [ cmake ] ++ lib.optional withGUI wrapQtAppsHook; + nativeBuildInputs = [ cmake pkg-config wrapQtAppsHook ]; dontWrapQtApps = true; buildInputs = [ openssl + pcre ] ++ lib.optionals withGUI [ qttools ] ++ lib.optionals stdenv.isDarwin [ - ApplicationServices Carbon Cocoa CoreServices ScreenSaver + ApplicationServices + Carbon + Cocoa + CoreServices + ScreenSaver ] ++ lib.optionals stdenv.isLinux [ - xlibsWrapper libX11 libXi libXtst libXrandr xinput avahi-compat + util-linux + libselinux + libsepol + xlibsWrapper + libX11 + libXi + libXtst + libXrandr + xinput + avahi-compat + gdk-pixbuf + libnotify ]; installPhase = '' @@ -60,7 +109,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "Share one mouse and keyboard between multiple computers"; - homepage = "https://synergy-project.org/"; + homepage = "https://symless.com/synergy"; license = licenses.gpl2; maintainers = with maintainers; [ talyz ]; platforms = platforms.all; diff --git a/pkgs/applications/misc/synergy/macos_build_fix.patch b/pkgs/applications/misc/synergy/macos_build_fix.patch index 50087a2c4b4b..c304f3bfdd44 100644 --- a/pkgs/applications/misc/synergy/macos_build_fix.patch +++ b/pkgs/applications/misc/synergy/macos_build_fix.patch @@ -1,20 +1,29 @@ diff --git a/CMakeLists.txt b/CMakeLists.txt -index c1e78d1d..13639ba1 100644 +index 50e712fa..d39c2ce4 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt -@@ -328,14 +328,7 @@ if (${CMAKE_SYSTEM_NAME} MATCHES "Windows") - ${OPENSSL_ROOT}/lib/libssl.lib - ${OPENSSL_ROOT}/lib/libcrypto.lib - ) --elseif (${CMAKE_SYSTEM_NAME} MATCHES "Darwin") -- set (OPENSSL_ROOT /usr/local/opt/openssl) -- include_directories (BEFORE SYSTEM ${OPENSSL_ROOT}/include) -- set (OPENSSL_LIBS -- ${OPENSSL_ROOT}/lib/libssl.a -- ${OPENSSL_ROOT}/lib/libcrypto.a -- ) --elseif (${CMAKE_SYSTEM_NAME} MATCHES "Linux|.*BSD|DragonFly") -+elseif (${CMAKE_SYSTEM_NAME} MATCHES "Linux|Darwin|.*BSD|DragonFly") - set (OPENSSL_LIBS ssl crypto) - else() - message (FATAL_ERROR "Couldn't find OpenSSL") +@@ -326,9 +326,6 @@ endif() + # Apple has to use static libraries because + # "Use of the Apple-provided OpenSSL libraries by apps is strongly discouraged." + # https://developer.apple.com/library/archive/documentation/Security/Conceptual/cryptoservices/SecureNetworkCommunicationAPIs/SecureNetworkCommunicationAPIs.html +-if(APPLE) +- set(OPENSSL_USE_STATIC_LIBS TRUE) +-endif() + find_package(OpenSSL REQUIRED) + + # +diff --git a/src/gui/src/OSXHelpers.mm b/src/gui/src/OSXHelpers.mm +index 0c98afc1..38c190a6 100644 +--- a/src/gui/src/OSXHelpers.mm ++++ b/src/gui/src/OSXHelpers.mm +@@ -20,10 +20,6 @@ + #import <Foundation/Foundation.h> + #import <CoreData/CoreData.h> + #import <Cocoa/Cocoa.h> +-#import <UserNotifications/UNNotification.h> +-#import <UserNotifications/UNUserNotificationCenter.h> +-#import <UserNotifications/UNNotificationContent.h> +-#import <UserNotifications/UNNotificationTrigger.h> + + #import <QtGlobal> + diff --git a/pkgs/applications/misc/tasknc/default.nix b/pkgs/applications/misc/tasknc/default.nix index d24a7d3e0d13..5250581762b0 100644 --- a/pkgs/applications/misc/tasknc/default.nix +++ b/pkgs/applications/misc/tasknc/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchFromGitHub, makeWrapper, perl, ncurses5, taskwarrior }: +{ lib, stdenv, fetchFromGitHub, fetchpatch, makeWrapper, perl, ncurses5, taskwarrior }: stdenv.mkDerivation rec { version = "2020-12-17"; @@ -11,6 +11,16 @@ stdenv.mkDerivation rec { sha256 = "0jrv2k1yizfdjndbl06lmy2bb62ky2rjdk308967j31c5kqqnw56"; }; + # Pull pending upstream inclusion for ncurses-6.3: + # https://github.com/lharding/tasknc/pull/57 + patches = [ + (fetchpatch { + name = "ncurses-6.3.patch"; + url = "https://github.com/lharding/tasknc/commit/f74ea0641e9bf287acf22fac9f6eeea571b01800.patch"; + sha256 = "18a90zj85sw2zfnfcv055nvi0lx3h8lcgsyabdfk94ksn78pygrv"; + }) + ]; + nativeBuildInputs = [ makeWrapper perl # For generating the man pages with pod2man diff --git a/pkgs/applications/misc/twmn/default.nix b/pkgs/applications/misc/twmn/default.nix index b7974966be45..d4b4d1d9d803 100644 --- a/pkgs/applications/misc/twmn/default.nix +++ b/pkgs/applications/misc/twmn/default.nix @@ -1,7 +1,8 @@ { lib, mkDerivation, fetchFromGitHub, qtbase, qtx11extras, qmake, pkg-config, boost }: mkDerivation { - name = "twmn-git-2018-10-01"; + pname = "twmn"; + version = "unstable-2018-10-01"; src = fetchFromGitHub { owner = "sboli"; diff --git a/pkgs/applications/misc/waybar/default.nix b/pkgs/applications/misc/waybar/default.nix index a38c1002a01f..38ea7c909c05 100644 --- a/pkgs/applications/misc/waybar/default.nix +++ b/pkgs/applications/misc/waybar/default.nix @@ -10,7 +10,6 @@ , gtkmm3 , libsigcxx , jsoncpp -, fmt , scdoc , spdlog , gtk-layer-shell @@ -51,7 +50,7 @@ stdenv.mkDerivation rec { strictDeps = false; buildInputs = with lib; - [ wayland wlroots gtkmm3 libsigcxx jsoncpp fmt spdlog gtk-layer-shell howard-hinnant-date libxkbcommon ] + [ wayland wlroots gtkmm3 libsigcxx jsoncpp spdlog gtk-layer-shell howard-hinnant-date libxkbcommon ] ++ optional traySupport libdbusmenu-gtk3 ++ optional pulseSupport libpulseaudio ++ optional sndioSupport sndio diff --git a/pkgs/applications/misc/wmname/default.nix b/pkgs/applications/misc/wmname/default.nix index cb4f5ec34425..438bd5c5d56a 100644 --- a/pkgs/applications/misc/wmname/default.nix +++ b/pkgs/applications/misc/wmname/default.nix @@ -1,10 +1,11 @@ { lib, stdenv, fetchurl, libX11 }: stdenv.mkDerivation rec { - name = "wmname-0.1"; + pname = "wmname"; + version = "0.1"; src = fetchurl { - url = "https://dl.suckless.org/tools/${name}.tar.gz"; + url = "https://dl.suckless.org/tools/wmname-${version}.tar.gz"; sha256 = "559ad188b2913167dcbb37ecfbb7ed474a7ec4bbcb0129d8d5d08cb9208d02c5"; }; diff --git a/pkgs/applications/misc/xcruiser/default.nix b/pkgs/applications/misc/xcruiser/default.nix index db7fe260b924..d57eb4878173 100644 --- a/pkgs/applications/misc/xcruiser/default.nix +++ b/pkgs/applications/misc/xcruiser/default.nix @@ -1,12 +1,13 @@ { lib, stdenv, fetchurl, gccmakedep, imake, libXt, libXaw, libXpm, libXext }: -stdenv.mkDerivation { - name = "xcruiser-0.30"; +stdenv.mkDerivation rec { + pname = "xcruiser"; + version = "0.30"; src = fetchurl { - url = "mirror://sourceforge/xcruiser/xcruiser/xcruiser-0.30/xcruiser-0.30.tar.gz"; - sha256 = "1r8whva38xizqdh7jmn6wcmfmsndc67pkw22wzfzr6rq0vf6hywi"; - }; + url = "mirror://sourceforge/xcruiser/xcruiser/xcruiser-${version}/xcruiser-${version}.tar.gz"; + sha256 = "1r8whva38xizqdh7jmn6wcmfmsndc67pkw22wzfzr6rq0vf6hywi"; + }; nativeBuildInputs = [ gccmakedep imake ]; buildInputs = [ libXt libXaw libXpm libXext ]; diff --git a/pkgs/applications/misc/xfe/default.nix b/pkgs/applications/misc/xfe/default.nix index 17e58cb54d71..d59b936608c8 100644 --- a/pkgs/applications/misc/xfe/default.nix +++ b/pkgs/applications/misc/xfe/default.nix @@ -1,10 +1,11 @@ { lib, stdenv, fetchurl, fox, pkg-config, gettext, xlibsWrapper, gcc, intltool, file, libpng }: stdenv.mkDerivation rec { - name = "xfe-1.42"; + pname = "xfe"; + version = "1.42"; src = fetchurl { - url = "mirror://sourceforge/xfe/${name}.tar.gz"; + url = "mirror://sourceforge/xfe/xfe-${version}.tar.gz"; sha256 = "1v1v0vcbnm30kpyd3rj8f56yh7lfnwy7nbs9785wi229b29fiqx1"; }; @@ -17,7 +18,7 @@ stdenv.mkDerivation rec { enableParallelBuilding = true; - meta = { + meta = with lib; { description = "MS-Explorer like file manager for X"; longDescription = '' X File Explorer (Xfe) is an MS-Explorer like file manager for X. @@ -25,8 +26,8 @@ stdenv.mkDerivation rec { Xfe aims to be the filemanager of choice for all the Unix addicts! ''; homepage = "https://sourceforge.net/projects/xfe/"; - license = lib.licenses.gpl2; - maintainers = []; - platforms = lib.platforms.linux; + license = licenses.gpl2; + maintainers = with maintainers; [ ]; + platforms = platforms.linux; }; } diff --git a/pkgs/applications/misc/xfontsel/default.nix b/pkgs/applications/misc/xfontsel/default.nix index 365f6217861b..d056dd66e8da 100644 --- a/pkgs/applications/misc/xfontsel/default.nix +++ b/pkgs/applications/misc/xfontsel/default.nix @@ -2,17 +2,20 @@ # at https://www.x.org/releases/individual/. # That is why this expression is not inside pkgs.xorg -{lib, stdenv, fetchurl, makeWrapper, libX11, pkg-config, libXaw}: +{ lib, stdenv, fetchurl, makeWrapper, libX11, pkg-config, libXaw }: + stdenv.mkDerivation rec { - name = "xfontsel-1.0.6"; + pname = "xfontsel"; + version = "1.0.6"; src = fetchurl { - url = "mirror://xorg/individual/app/${name}.tar.bz2"; + url = "mirror://xorg/individual/app/xfontsel-${version}.tar.bz2"; sha256 = "0700lf6hx7dg88wq1yll7zjvf9gbwh06xff20yffkxb289y0pai5"; }; nativeBuildInputs = [ pkg-config makeWrapper ]; - buildInputs = [libX11 libXaw]; + + buildInputs = [ libX11 libXaw ]; # Without this, it gets Xmu as a dependency, but without rpath entry NIX_LDFLAGS = "-lXmu"; @@ -26,11 +29,11 @@ stdenv.mkDerivation rec { --set XAPPLRESDIR $out/share/X11/app-defaults ''; - meta = { + meta = with lib; { homepage = "https://www.x.org/"; description = "Allows testing the fonts available in an X server"; - license = lib.licenses.free; - maintainers = with lib.maintainers; [viric]; - platforms = with lib.platforms; linux ++ darwin; + license = licenses.free; + maintainers = with maintainers; [ viric ]; + platforms = platforms.unix; }; } diff --git a/pkgs/applications/misc/xpdf/libxpdf.nix b/pkgs/applications/misc/xpdf/libxpdf.nix index 065ca813155d..61c696f1309e 100644 --- a/pkgs/applications/misc/xpdf/libxpdf.nix +++ b/pkgs/applications/misc/xpdf/libxpdf.nix @@ -1,8 +1,11 @@ -{ lib, stdenv, fetchurl +{ lib +, stdenv +, fetchurl }: stdenv.mkDerivation { - name = "libxpdf-3.02pl5"; + pname = "libxpdf"; + version = "3.02pl5"; src = fetchurl { url = "https://dl.xpdfreader.com/old/xpdf-3.02.tar.gz"; diff --git a/pkgs/applications/misc/xrq/default.nix b/pkgs/applications/misc/xrq/default.nix index e8e6490cbd64..22ad3d789ac9 100644 --- a/pkgs/applications/misc/xrq/default.nix +++ b/pkgs/applications/misc/xrq/default.nix @@ -1,7 +1,8 @@ -{ lib, stdenv, fetchFromGitHub, libX11}: +{ lib, stdenv, fetchFromGitHub, libX11 }: stdenv.mkDerivation { - name = "xrq-unstable-2016-01-15"; + pname = "xrq"; + version = "unstable-2016-01-15"; src = fetchFromGitHub { owner = "arianon"; diff --git a/pkgs/applications/misc/xxkb/default.nix b/pkgs/applications/misc/xxkb/default.nix index b579579195f6..d6514e58517e 100644 --- a/pkgs/applications/misc/xxkb/default.nix +++ b/pkgs/applications/misc/xxkb/default.nix @@ -1,21 +1,35 @@ -{ lib, stdenv, fetchurl, libX11, libXt, libXext, libXpm, imake, gccmakedep -, svgSupport ? false, librsvg, glib, gdk-pixbuf, pkg-config +{ lib +, stdenv +, fetchurl +, libX11 +, libXt +, libXext +, libXpm +, imake +, gccmakedep +, svgSupport ? false +, librsvg +, glib +, gdk-pixbuf +, pkg-config }: -assert svgSupport -> - librsvg != null && glib != null && gdk-pixbuf != null && pkg-config != null; - stdenv.mkDerivation rec { - name = "xxkb-1.11.1"; + pname = "xxkb"; + version = "1.11.1"; src = fetchurl { - url = "mirror://sourceforge/xxkb/${name}-src.tar.gz"; + url = "mirror://sourceforge/xxkb/xxkb-${version}-src.tar.gz"; sha256 = "0hl1i38z9xnbgfjkaz04vv1n8xbgfg88g5z8fyzyb2hxv2z37anf"; }; nativeBuildInputs = [ imake gccmakedep ]; + buildInputs = [ - libX11 libXt libXext libXpm + libX11 + libXt + libXext + libXpm ] ++ lib.optionals svgSupport [ librsvg glib gdk-pixbuf pkg-config ]; outputs = [ "out" "man" ]; @@ -33,11 +47,11 @@ stdenv.mkDerivation rec { installTargets = [ "install" "install.man" ]; - meta = { + meta = with lib; { description = "A keyboard layout indicator and switcher"; homepage = "http://xxkb.sourceforge.net/"; - license = lib.licenses.artistic2; - maintainers = with lib.maintainers; [ rasendubi ]; - platforms = lib.platforms.linux; + license = licenses.artistic2; + maintainers = with maintainers; [ rasendubi ]; + platforms = platforms.linux; }; } diff --git a/pkgs/applications/misc/yarssr/default.nix b/pkgs/applications/misc/yarssr/default.nix index 93e8f1fc9d75..d031f63a097a 100644 --- a/pkgs/applications/misc/yarssr/default.nix +++ b/pkgs/applications/misc/yarssr/default.nix @@ -2,16 +2,33 @@ let perlDeps = with perlPackages; [ - Glib Gtk2 Gnome2 Pango Cairo Gnome2Canvas Gnome2VFS Gtk2GladeXML Gtk2TrayIcon - XMLLibXML XMLSAXBase XMLParser XMLRSS + Glib + Gtk2 + Gnome2 + Pango + Cairo + Gnome2Canvas + Gnome2VFS + Gtk2GladeXML + Gtk2TrayIcon + XMLLibXML + XMLSAXBase + XMLParser + XMLRSS HTMLParser - DateTime DateTimeFormatMail DateTimeFormatW3CDTF DateTimeLocale DateTimeTimeZone + DateTime + DateTimeFormatMail + DateTimeFormatW3CDTF + DateTimeLocale + DateTimeTimeZone ParamsValidate - ModuleImplementation ModuleRuntime + ModuleImplementation + ModuleRuntime TryTiny ClassSingleton URI - AnyEvent AnyEventHTTP + AnyEvent + AnyEventHTTP commonsense FileSlurp JSON @@ -24,7 +41,7 @@ let ]; in stdenv.mkDerivation { - version = "git-2017-12-01"; + version = "unstable-2017-12-01"; pname = "yarssr"; src = fetchFromGitHub { @@ -35,7 +52,7 @@ stdenv.mkDerivation { }; nativeBuildInputs = [ perlPackages.perl gettext makeWrapper ]; - buildInputs = perlDeps ++ [gnome2.libglade]; + buildInputs = perlDeps ++ [ gnome2.libglade ]; propagatedBuildInputs = libs ++ perlDeps; installPhase = '' diff --git a/pkgs/applications/misc/zettlr/default.nix b/pkgs/applications/misc/zettlr/default.nix index 26b925d51a83..65aca548e4c3 100644 --- a/pkgs/applications/misc/zettlr/default.nix +++ b/pkgs/applications/misc/zettlr/default.nix @@ -10,11 +10,11 @@ # Based on https://gist.github.com/msteen/96cb7df66a359b827497c5269ccbbf94 and joplin-desktop nixpkgs. let pname = "zettlr"; - version = "2.0.1"; + version = "2.0.2"; name = "${pname}-${version}"; src = fetchurl { url = "https://github.com/Zettlr/Zettlr/releases/download/v${version}/Zettlr-${version}-x86_64.appimage"; - sha256 = "sha256-vnkZGxuLvj8Pjmey6NO3mcHuWbtO0bYEfgKwvgumbPA="; + sha256 = "sha256-AUGfD7FFB5+pfKyIqvychD4mvFU+GTRneQTRI+8bwBM="; }; appimageContents = appimageTools.extractType2 { inherit name src; diff --git a/pkgs/applications/networking/browsers/brave/default.nix b/pkgs/applications/networking/browsers/brave/default.nix index ce69121c6cac..a60f9da39bc6 100644 --- a/pkgs/applications/networking/browsers/brave/default.nix +++ b/pkgs/applications/networking/browsers/brave/default.nix @@ -93,11 +93,11 @@ in stdenv.mkDerivation rec { pname = "brave"; - version = "1.31.87"; + version = "1.31.91"; src = fetchurl { url = "https://github.com/brave/brave-browser/releases/download/v${version}/brave-browser_${version}_amd64.deb"; - sha256 = "lfkTB8oXxZqgbO7d8cdktSd6ivQc3g5kiAYZKyrrLpw="; + sha256 = "LuzflA96UQehLHUVYdPDTXs+YuFLEkpzTdO2liGrWtE="; }; dontConfigure = true; diff --git a/pkgs/applications/networking/browsers/chromium/upstream-info.json b/pkgs/applications/networking/browsers/chromium/upstream-info.json index acc11144def9..624dde9e1702 100644 --- a/pkgs/applications/networking/browsers/chromium/upstream-info.json +++ b/pkgs/applications/networking/browsers/chromium/upstream-info.json @@ -18,9 +18,9 @@ } }, "beta": { - "version": "96.0.4664.27", - "sha256": "1ym9llqmkhlnrmawc0dcnzkvr714kykvdcldkar5yqp0x46k7bi6", - "sha256bin64": "1x4y589qmiz0zgkpv17phcl8h5c7qankpfvv6c42w5bysx6mn1f7", + "version": "96.0.4664.45", + "sha256": "01q4fsf2cbx6g9nnaihvc5jj3ap8jq2gf16pnhf7ixzbhgcnm328", + "sha256bin64": "1vaazcrlx0999xd9yp25i9kzb8y8g0yqd28xssw7jqwrhz033wgr", "deps": { "gn": { "version": "2021-09-24", @@ -31,15 +31,15 @@ } }, "dev": { - "version": "97.0.4682.3", - "sha256": "1z2d3r3d4g3ng1p73s243jllvvfkh085vvqz0vaa6pv7c9631pn4", - "sha256bin64": "0xravg4jjbwj7vifabz94mfammv0zx754hpa6kynjaqzvlxbax2a", + "version": "97.0.4692.8", + "sha256": "0n47jfxs05g55p69f5939jf5pgyw88n4cpg78k019n3zr2vlv1qf", + "sha256bin64": "1gisqc6dz7yfigj0dji7cnx5jdcjz0gmn248cp2a6zs9mfvwwbqv", "deps": { "gn": { - "version": "2021-10-08", + "version": "2021-11-03", "url": "https://gn.googlesource.com/gn", - "rev": "693f9fb87e4febdd4299db9f73d8d2c958e63148", - "sha256": "1qfjj2mdpflry4f9fkagvb76zwfibys4nqz9lddy1zh5nnbd9mff" + "rev": "90294ccdcf9334ed25a76ac9b67689468e506342", + "sha256": "0n0jml8s00ayy186jzrf207hbz70pxiq426znxwxd4gjcp60scsa" } } }, diff --git a/pkgs/applications/networking/browsers/ephemeral/default.nix b/pkgs/applications/networking/browsers/ephemeral/default.nix index 1fea44e66279..7ff3b843bc22 100644 --- a/pkgs/applications/networking/browsers/ephemeral/default.nix +++ b/pkgs/applications/networking/browsers/ephemeral/default.nix @@ -67,5 +67,6 @@ stdenv.mkDerivation rec { maintainers = with maintainers; [ xiorcale ] ++ teams.pantheon.members; platforms = platforms.linux; license = licenses.gpl3; + mainProgram = "com.github.cassidyjames.ephemeral"; }; } diff --git a/pkgs/applications/networking/browsers/firefox-bin/release_sources.nix b/pkgs/applications/networking/browsers/firefox-bin/release_sources.nix index 8d91260b6bb0..4c47eb3b285e 100644 --- a/pkgs/applications/networking/browsers/firefox-bin/release_sources.nix +++ b/pkgs/applications/networking/browsers/firefox-bin/release_sources.nix @@ -1,985 +1,985 @@ { - version = "93.0"; + version = "94.0"; sources = [ - { url = "http://archive.mozilla.org/pub/firefox/releases/93.0/linux-x86_64/ach/firefox-93.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/94.0/linux-x86_64/ach/firefox-94.0.tar.bz2"; locale = "ach"; arch = "linux-x86_64"; - sha256 = "8be7f497a9bd28eedb3b30c4c5437242cbd599df3fa5e7a6a2912acadc126707"; + sha256 = "de15198bb4e95a84482694415e656c03aa4d4b0c3cc0e3631e8454189a516835"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/93.0/linux-x86_64/af/firefox-93.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/94.0/linux-x86_64/af/firefox-94.0.tar.bz2"; locale = "af"; arch = "linux-x86_64"; - sha256 = "aaab5d767d832e883a5ca2ad0a81b128c0fbebe141238835064210b27e47db6b"; + sha256 = "01419633778013bfa5c5577dcb58f03fc74f851b53af6585a7d69ec25145d13a"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/93.0/linux-x86_64/an/firefox-93.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/94.0/linux-x86_64/an/firefox-94.0.tar.bz2"; locale = "an"; arch = "linux-x86_64"; - sha256 = "8340801d581d55a249b94378c69061466aa6e6181d64790d5bda43d2b3631a27"; + sha256 = "6ac71816131c4540131e81b0d53957cd83112bc97da4fe6c1302743c4ca45c54"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/93.0/linux-x86_64/ar/firefox-93.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/94.0/linux-x86_64/ar/firefox-94.0.tar.bz2"; locale = "ar"; arch = "linux-x86_64"; - sha256 = "03e0cd262aad9e49b10f6626ec2c96f1646a51d1e461998be5d5487a40709626"; + sha256 = "74253d1a9325bbe0ce20f8dad8eee0d22b4cb6080a38e3a780b831d75e6e73db"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/93.0/linux-x86_64/ast/firefox-93.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/94.0/linux-x86_64/ast/firefox-94.0.tar.bz2"; locale = "ast"; arch = "linux-x86_64"; - sha256 = "062e4bdc3144b19b5f85ded44078ef64e988bc4c9658ac189771b3411b3e0145"; + sha256 = "f1e0d0d63ae5ba972592ed07b7844090aefdc07d67dec25e444e6f68a8fee834"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/93.0/linux-x86_64/az/firefox-93.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/94.0/linux-x86_64/az/firefox-94.0.tar.bz2"; locale = "az"; arch = "linux-x86_64"; - sha256 = "175fb26412691b06d82f0175bdb51bf5635ff16564df93cdd4c332d6614fbcb9"; + sha256 = "1bf3613239e288de9c1116d2f292fe86c8cef38da4d8e459b1ac907ead624c14"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/93.0/linux-x86_64/be/firefox-93.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/94.0/linux-x86_64/be/firefox-94.0.tar.bz2"; locale = "be"; arch = "linux-x86_64"; - sha256 = "9841d99dd7407397388384d37a1b4d11027344e1710073ad3425163144445341"; + sha256 = "820de9fd56247c99a62fee8b01b0274b1171d7093de7f2261e4457651392d523"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/93.0/linux-x86_64/bg/firefox-93.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/94.0/linux-x86_64/bg/firefox-94.0.tar.bz2"; locale = "bg"; arch = "linux-x86_64"; - sha256 = "2932865a731d33c3447aa17d545185faff6fb8db32502236537301ec7eb3d54f"; + sha256 = "dbb01c85c26d21ea8b971e7bfb1cd0af45ebc0378783368b7f0801d4f712e4a5"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/93.0/linux-x86_64/bn/firefox-93.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/94.0/linux-x86_64/bn/firefox-94.0.tar.bz2"; locale = "bn"; arch = "linux-x86_64"; - sha256 = "b9d7a1d69e0bf88fcdb24038f410289187a3de5047fa28925513a5f6ac47ae46"; + sha256 = "06bf17d84782c636b84f0239900256c23b353e17fceca2c31bd3f3a128c72c67"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/93.0/linux-x86_64/br/firefox-93.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/94.0/linux-x86_64/br/firefox-94.0.tar.bz2"; locale = "br"; arch = "linux-x86_64"; - sha256 = "ef5b6a548c200cd0e519c67a6542624a6b085ed20ca78e162b0dfb5b9d921a0a"; + sha256 = "5473adf681b62bd3316a14b3d1fe54c86bebce1960495630c83eb556bad3115e"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/93.0/linux-x86_64/bs/firefox-93.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/94.0/linux-x86_64/bs/firefox-94.0.tar.bz2"; locale = "bs"; arch = "linux-x86_64"; - sha256 = "4a8e64d088509a8df5b95eea4c39267a884bb2906a71ac39056214dfc10a62c2"; + sha256 = "c1de2c5f685e5c62a75b4bb9ff26486f968de3aac16a92fd86c9fd927d24289e"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/93.0/linux-x86_64/ca-valencia/firefox-93.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/94.0/linux-x86_64/ca-valencia/firefox-94.0.tar.bz2"; 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+ sha256 = "ba8656ec5386b77fcc850be8f5218c3bfca154a2aadf20248bf3307290c03646"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/93.0/linux-i686/uz/firefox-93.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/94.0/linux-i686/uz/firefox-94.0.tar.bz2"; locale = "uz"; arch = "linux-i686"; - sha256 = "7f92bd0536d32ca7af1f8dbe4fd7dd5eb7ce8c2f2d1383b21bfd5b1c8c7ca30e"; + sha256 = "f3ca1728f5bd101c57171c820f6831fa1c2d2c03cfc84aa52b47d74d6a044dda"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/93.0/linux-i686/vi/firefox-93.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/94.0/linux-i686/vi/firefox-94.0.tar.bz2"; locale = "vi"; arch = "linux-i686"; - sha256 = "04d7ac16f2d28bfe3d70e717c8a4ee10c291bea54f022521eb22856d41f421ae"; + sha256 = "98d119cea1d534c5390c68066424eeca8cccf8c842e27608aff1a66fb07feda0"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/93.0/linux-i686/xh/firefox-93.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/94.0/linux-i686/xh/firefox-94.0.tar.bz2"; locale = "xh"; arch = "linux-i686"; - sha256 = "12591a4fe50ef293015484dcef03d43e1922cca4724b3901d38e0cd136b12274"; + sha256 = "980e757674515b98d197ea27a33d8b3f9fee9a284a578c22f76b038917007b86"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/93.0/linux-i686/zh-CN/firefox-93.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/94.0/linux-i686/zh-CN/firefox-94.0.tar.bz2"; locale = "zh-CN"; arch = "linux-i686"; - sha256 = "a9b69bde93512f6531740a4bea967717fb56ad5cfe88a9b89db0e4fc1a971feb"; + sha256 = "87f6d9188135de2389c2288324ed2063aa5adc21ac7c1412d99922d75e0f0156"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/93.0/linux-i686/zh-TW/firefox-93.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/94.0/linux-i686/zh-TW/firefox-94.0.tar.bz2"; locale = "zh-TW"; arch = "linux-i686"; - sha256 = "3c790d0a8ba551c22e7b92bd993eb077159e21e2e3748e64d2aa635739511c36"; + sha256 = "10a77bf3f63e669226bb44c6ada46c8224b73b9bfa03d05480fa6255fa9744eb"; } ]; } diff --git a/pkgs/applications/networking/browsers/firefox/packages.nix b/pkgs/applications/networking/browsers/firefox/packages.nix index d1cbe5d44732..689ef8c59154 100644 --- a/pkgs/applications/networking/browsers/firefox/packages.nix +++ b/pkgs/applications/networking/browsers/firefox/packages.nix @@ -7,10 +7,10 @@ in rec { firefox = common rec { pname = "firefox"; - version = "94.0"; + version = "94.0.1"; src = fetchurl { url = "mirror://mozilla/firefox/releases/${version}/source/firefox-${version}.source.tar.xz"; - sha512 = "5eb65450a0f1842d28d73235f3ef95fa1dbf8cf1467c354f13df51313bd227aaf5a48b741ee49b13378aaaf054bff52004c1dd5a274eddef4a3cf1b913ef7071"; + sha512 = "634665ed64f2ef205fad03ba023bc915df110c0d4b0a5e36aa470627808fbb3bce5418ea607f909d4e1eaf7d90c5dcacf398b8a434e26906dcfa366292a18b66"; }; meta = { diff --git a/pkgs/applications/networking/browsers/gmni/default.nix b/pkgs/applications/networking/browsers/gmni/default.nix index 7baca62e6732..4bc4e360120f 100644 --- a/pkgs/applications/networking/browsers/gmni/default.nix +++ b/pkgs/applications/networking/browsers/gmni/default.nix @@ -1,24 +1,24 @@ -{ stdenv, lib, fetchFromSourcehut, pkg-config, bearssl, scdoc }: +{ stdenv, lib, fetchFromSourcehut, bearssl, scdoc }: stdenv.mkDerivation rec { pname = "gmni"; - version = "unstable-2021-03-26"; + version = "1.0"; src = fetchFromSourcehut { owner = "~sircmpwn"; repo = "gmni"; - rev = "77b73efbcd3ea7ed9e3e4c0aa19d9247e21d3c87"; - sha256 = "1wvnzyv7vyddcd39y6q5aflpnnsdl4k4y5aj5ssb7vgkld0h1b7r"; + rev = version; + sha256 = "sha256-3MFNAI/SfFigNfitfFs3o9kkz7JeEflMHiH7iJpLfi4="; }; - nativeBuildInputs = [ pkg-config ]; - buildInputs = [ bearssl scdoc ]; + nativeBuildInputs = [ scdoc ]; + buildInputs = [ bearssl ]; meta = with lib; { description = "A Gemini client"; homepage = "https://git.sr.ht/~sircmpwn/gmni"; license = licenses.gpl3Only; maintainers = with maintainers; [ bsima jb55 ]; - platforms = platforms.all; + platforms = platforms.linux; }; } diff --git a/pkgs/applications/networking/browsers/tor-browser-bundle-bin/default.nix b/pkgs/applications/networking/browsers/tor-browser-bundle-bin/default.nix index 8ac9235121c3..0e1f67800a20 100644 --- a/pkgs/applications/networking/browsers/tor-browser-bundle-bin/default.nix +++ b/pkgs/applications/networking/browsers/tor-browser-bundle-bin/default.nix @@ -43,12 +43,11 @@ # Hardening , graphene-hardened-malloc -# crashes with intel driver -, useHardenedMalloc ? false +# Whether to use graphene-hardened-malloc +, useHardenedMalloc ? true -# Whether to disable multiprocess support to work around crashing tabs -# TODO: fix the underlying problem instead of this terrible work-around -, disableContentSandbox ? true +# Whether to disable multiprocess support +, disableContentSandbox ? false # Extra preferences , extraPrefs ? "" @@ -88,7 +87,7 @@ let fteLibPath = makeLibraryPath [ stdenv.cc.cc gmp ]; # Upstream source - version = "10.5.8"; + version = "11.0"; lang = "en-US"; @@ -98,7 +97,7 @@ let "https://dist.torproject.org/torbrowser/${version}/tor-browser-linux64-${version}_${lang}.tar.xz" "https://tor.eff.org/dist/torbrowser/${version}/tor-browser-linux64-${version}_${lang}.tar.xz" ]; - sha256 = "1bn31r3cayv79pjw5ndji5qzxy552cb2mcavij3nwchsmnfqp4z1"; + sha256 = "0938a9yjfg9qa9rv5acrmbgqq11mc8j0pvl1n64jrdz29crk6sj2"; }; i686-linux = fetchurl { @@ -106,7 +105,7 @@ let "https://dist.torproject.org/torbrowser/${version}/tor-browser-linux32-${version}_${lang}.tar.xz" "https://tor.eff.org/dist/torbrowser/${version}/tor-browser-linux32-${version}_${lang}.tar.xz" ]; - sha256 = "1j3xxflwwjwxfayixj75dn6a2ka751s53f60dpkfzwpp5rfwl572"; + sha256 = "07v1ca66a69jl238qdq81mw654yffrcyq685y4rvv8xvx11fnzzp"; }; }; in diff --git a/pkgs/applications/networking/browsers/yandex-browser/default.nix b/pkgs/applications/networking/browsers/yandex-browser/default.nix index 7fa9fb5237a9..a54ccfdf6cc3 100644 --- a/pkgs/applications/networking/browsers/yandex-browser/default.nix +++ b/pkgs/applications/networking/browsers/yandex-browser/default.nix @@ -131,5 +131,6 @@ stdenv.mkDerivation rec { license = licenses.unfree; maintainers = with maintainers; [ dan4ik605743 ]; platforms = [ "x86_64-linux" ]; + broken = true; }; } diff --git a/pkgs/applications/networking/cisco-packet-tracer/7.nix b/pkgs/applications/networking/cisco-packet-tracer/7.nix new file mode 100644 index 000000000000..33f35ba12af3 --- /dev/null +++ b/pkgs/applications/networking/cisco-packet-tracer/7.nix @@ -0,0 +1,90 @@ +{ stdenv +, lib +, buildFHSUserEnvBubblewrap +, callPackage +, copyDesktopItems +, dpkg +, lndir +, makeDesktopItem +, makeWrapper +, requireFile +}: + +let + version = "7.3.1"; + + ptFiles = stdenv.mkDerivation { + name = "PacketTracer7drv"; + inherit version; + + dontUnpack = true; + src = requireFile { + name = "PacketTracer_${builtins.replaceStrings ["."] [""] version}_amd64.deb"; + sha256 = "c39802d15dd61d00ba27fb8c116da45fd8562ab4b49996555ad66b88deace27f"; + url = "https://www.netacad.com"; + }; + + nativeBuildInputs = [ dpkg makeWrapper ]; + + installPhase = '' + dpkg-deb -x $src $out + makeWrapper "$out/opt/pt/bin/PacketTracer7" "$out/bin/packettracer7" \ + --prefix LD_LIBRARY_PATH : "$out/opt/pt/bin" + ''; + }; + + desktopItem = makeDesktopItem { + name = "cisco-pt7.desktop"; + desktopName = "Cisco Packet Tracer 7"; + icon = "${ptFiles}/opt/pt/art/app.png"; + exec = "packettracer7 %f"; + mimeType = "application/x-pkt;application/x-pka;application/x-pkz;"; + }; + + fhs = buildFHSUserEnvBubblewrap { + name = "packettracer7"; + runScript = "${ptFiles}/bin/packettracer7"; + + targetPkgs = pkgs: with pkgs; [ + alsa-lib + dbus + expat + fontconfig + glib + libglvnd + libpulseaudio + libudev0-shim + libxkbcommon + libxml2 + libxslt + nspr + nss + xorg.libICE + xorg.libSM + xorg.libX11 + xorg.libXScrnSaver + ]; + }; +in stdenv.mkDerivation { + pname = "ciscoPacketTracer7"; + inherit version; + + dontUnpack = true; + + installPhase = '' + mkdir $out + ${lndir}/bin/lndir -silent ${fhs} $out + ''; + + desktopItems = [ desktopItem ]; + + nativeBuildInputs = [ copyDesktopItems ]; + + meta = with lib; { + description = "Network simulation tool from Cisco"; + homepage = "https://www.netacad.com/courses/packet-tracer"; + license = licenses.unfree; + maintainers = with maintainers; [ lucasew ]; + platforms = [ "x86_64-linux" ]; + }; +} diff --git a/pkgs/applications/networking/cisco-packet-tracer/8.nix b/pkgs/applications/networking/cisco-packet-tracer/8.nix new file mode 100644 index 000000000000..c823dcbb1d35 --- /dev/null +++ b/pkgs/applications/networking/cisco-packet-tracer/8.nix @@ -0,0 +1,131 @@ +{ stdenv +, lib +, alsa-lib +, autoPatchelfHook +, buildFHSUserEnvBubblewrap +, callPackage +, copyDesktopItems +, dbus +, dpkg +, expat +, fontconfig +, glib +, libdrm +, libglvnd +, libpulseaudio +, libudev0-shim +, libxkbcommon +, libxml2 +, libxslt +, lndir +, makeDesktopItem +, makeWrapper +, nspr +, nss +, requireFile +, xorg +}: + +let + version = "8.0.1"; + + ptFiles = stdenv.mkDerivation { + name = "PacketTracer8Drv"; + inherit version; + + dontUnpack = true; + src = requireFile { + name = "CiscoPacketTracer_${builtins.replaceStrings ["."] [""] version}_Ubuntu_64bit.deb"; + sha256 = "77a25351b016faed7c78959819c16c7013caa89c6b1872cb888cd96edd259140"; + url = "https://www.netacad.com"; + }; + + nativeBuildInputs = [ + alsa-lib + autoPatchelfHook + dbus + dpkg + expat + fontconfig + glib + libdrm + libglvnd + libpulseaudio + libudev0-shim + libxkbcommon + libxml2 + libxslt + makeWrapper + nspr + nss + ] ++ (with xorg; [ + libICE + libSM + libX11 + libxcb + libXcomposite + libXcursor + libXdamage + libXext + libXfixes + libXi + libXrandr + libXrender + libXScrnSaver + xcbutilimage + xcbutilkeysyms + xcbutilrenderutil + xcbutilwm + ]); + + installPhase = '' + dpkg-deb -x $src $out + chmod 755 "$out" + makeWrapper "$out/opt/pt/bin/PacketTracer" "$out/bin/packettracer" \ + --prefix LD_LIBRARY_PATH : "$out/opt/pt/bin" + + # Keep source archive cached, to avoid re-downloading + ln -s $src $out/usr/share/ + ''; + }; + + desktopItem = makeDesktopItem { + name = "cisco-pt8.desktop"; + desktopName = "Cisco Packet Tracer 8"; + icon = "${ptFiles}/opt/pt/art/app.png"; + exec = "packettracer8 %f"; + mimeType = "application/x-pkt;application/x-pka;application/x-pkz;"; + }; + + fhs = buildFHSUserEnvBubblewrap { + name = "packettracer8"; + runScript = "${ptFiles}/bin/packettracer"; + targetPkgs = pkgs: [ libudev0-shim ]; + + extraInstallCommands = '' + mkdir -p "$out/share/applications" + cp "${desktopItem}"/share/applications/* "$out/share/applications/" + ''; + }; +in stdenv.mkDerivation { + pname = "ciscoPacketTracer8"; + inherit version; + + dontUnpack = true; + + installPhase = '' + mkdir $out + ${lndir}/bin/lndir -silent ${fhs} $out + ''; + + desktopItems = [ desktopItem ]; + nativeBuildInputs = [ copyDesktopItems ]; + + meta = with lib; { + description = "Network simulation tool from Cisco"; + homepage = "https://www.netacad.com/courses/packet-tracer"; + license = licenses.unfree; + maintainers = with maintainers; [ lucasew ]; + platforms = [ "x86_64-linux" ]; + }; +} diff --git a/pkgs/applications/networking/cluster/argocd/default.nix b/pkgs/applications/networking/cluster/argocd/default.nix index 3eddad8c823c..38b6467857b8 100644 --- a/pkgs/applications/networking/cluster/argocd/default.nix +++ b/pkgs/applications/networking/cluster/argocd/default.nix @@ -69,6 +69,6 @@ buildGoModule rec { downloadPage = "https://github.com/argoproj/argo-cd"; homepage = "https://argo-cd.readthedocs.io/en/stable/"; license = licenses.asl20; - maintainers = with maintainers; [ shahrukh330 ]; + maintainers = with maintainers; [ shahrukh330 bryanasdev000 ]; }; } diff --git a/pkgs/applications/networking/cluster/fluxcd/default.nix b/pkgs/applications/networking/cluster/fluxcd/default.nix index bc6ef18c6446..3ff2621e29f3 100644 --- a/pkgs/applications/networking/cluster/fluxcd/default.nix +++ b/pkgs/applications/networking/cluster/fluxcd/default.nix @@ -1,9 +1,9 @@ { lib, buildGoModule, fetchFromGitHub, fetchzip, installShellFiles }: let - version = "0.20.1"; - sha256 = "1cbppkfw5jb0w36jjg32a4kffq616zdmib4kdhny4wwgskq4b2ng"; - manifestsSha256 = "0hwza39a31fjk37lgd0bdk8ja46sradyvkrnq2ad587zr8a8ddvb"; + version = "0.23.0"; + sha256 = "15j4r43hy3slyahx4am7lj7jns4x3axrcbr9qwiznmk8qbvrzrdy"; + manifestsSha256 = "10rh0q1la5dq6n9y1yvw9ilj5lhzx8vh1zi2lznfjsvc5niwx7wf"; manifests = fetchzip { url = "https://github.com/fluxcd/flux2/releases/download/v${version}/manifests.tar.gz"; @@ -23,7 +23,7 @@ buildGoModule rec { inherit sha256; }; - vendorSha256 = "sha256-pY+fTOZocHygT8GdRQGOujr+Pik2f21H8cqIFBKvzYQ="; + vendorSha256 = "sha256-vFm9ai+VWOPLRckKJ7gfD/0iQ8b4o5HNQE4cekb0vA0="; postUnpack = '' cp -r ${manifests} source/cmd/flux/manifests @@ -66,6 +66,6 @@ buildGoModule rec { ''; homepage = "https://fluxcd.io"; license = licenses.asl20; - maintainers = with maintainers; [ jlesquembre ]; + maintainers = with maintainers; [ jlesquembre bryanasdev000 ]; }; } diff --git a/pkgs/applications/networking/cluster/helm-docs/default.nix b/pkgs/applications/networking/cluster/helm-docs/default.nix new file mode 100644 index 000000000000..7214530a046d --- /dev/null +++ b/pkgs/applications/networking/cluster/helm-docs/default.nix @@ -0,0 +1,29 @@ +{ lib, buildGoModule, fetchFromGitHub }: + +buildGoModule rec { + pname = "helm-docs"; + version = "1.5.0"; + + src = fetchFromGitHub { + owner = "norwoodj"; + repo = "helm-docs"; + rev = "v${version}"; + sha256 = "sha256-eyFuF03rqwfXyjEkqNRkjrJlHBazGYij1EtN0LAKdFk="; + }; + + vendorSha256 = "sha256-aAn969C4UhFGu5/qXIG/rc1cErQIDtPwEA+f0d43y0w="; + + subPackages = [ "cmd/helm-docs" ]; + ldflags = [ + "-w" + "-s" + "-X main.version=v${version}" + ]; + + meta = with lib; { + homepage = "https://github.com/norwoodj/helm-docs"; + description = "A tool for automatically generating markdown documentation for Helm charts"; + license = licenses.gpl3Only; + maintainers = with maintainers; [ sagikazarmark ]; + }; +} diff --git a/pkgs/applications/networking/cluster/helm/default.nix b/pkgs/applications/networking/cluster/helm/default.nix index 425e7e2c2462..f13c812d604d 100644 --- a/pkgs/applications/networking/cluster/helm/default.nix +++ b/pkgs/applications/networking/cluster/helm/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "helm"; - version = "3.7.0"; - gitCommit = "eeac83883cb4014fe60267ec6373570374ce770b"; + version = "3.7.1"; + gitCommit = "1d11fcb5d3f3bf00dbe6fe31b8412839a96b3dc4"; src = fetchFromGitHub { owner = "helm"; repo = "helm"; rev = "v${version}"; - sha256 = "sha256-dV6Bx6XVzPqaRBeCzEFR473xnxjff4f24jd5vETVX78="; + sha256 = "sha256-NjBG3yLtvnAXziLH/ALRJVaFW327qo7cvnf1Jpq3QlI="; }; - vendorSha256 = "sha256-Q/ycpLCIvf+PP+03ug3fKT+uIOdzDwP7709VfFVJglk="; + vendorSha256 = "sha256-gmyF/xuf5dTxorgqvW4PNA1l2SQ2oJuZCAFw7d8ufGc="; doCheck = false; diff --git a/pkgs/applications/networking/cluster/helmfile/default.nix b/pkgs/applications/networking/cluster/helmfile/default.nix index a802ce67941b..d24dff6fb8a9 100644 --- a/pkgs/applications/networking/cluster/helmfile/default.nix +++ b/pkgs/applications/networking/cluster/helmfile/default.nix @@ -1,4 +1,4 @@ -{ lib, buildGoModule, fetchFromGitHub, makeWrapper, kubernetes-helm }: +{ lib, buildGoModule, fetchFromGitHub }: buildGoModule rec { pname = "helmfile"; @@ -15,17 +15,10 @@ buildGoModule rec { doCheck = false; - nativeBuildInputs = [ makeWrapper ]; - subPackages = [ "." ]; ldflags = [ "-s" "-w" "-X github.com/roboll/helmfile/pkg/app/version.Version=${version}" ]; - postInstall = '' - wrapProgram $out/bin/helmfile \ - --prefix PATH : ${lib.makeBinPath [ kubernetes-helm ]} - ''; - meta = { description = "Deploy Kubernetes Helm charts"; homepage = "https://github.com/roboll/helmfile"; diff --git a/pkgs/applications/networking/cluster/istioctl/default.nix b/pkgs/applications/networking/cluster/istioctl/default.nix index 508ea403c5fa..acf9cea24e6b 100644 --- a/pkgs/applications/networking/cluster/istioctl/default.nix +++ b/pkgs/applications/networking/cluster/istioctl/default.nix @@ -2,15 +2,15 @@ buildGoModule rec { pname = "istioctl"; - version = "1.11.2"; + version = "1.11.4"; src = fetchFromGitHub { owner = "istio"; repo = "istio"; rev = version; - sha256 = "sha256-4v/2lEq2BJX90P3UpSyDcHkxclMOTK9bmvyq0MyB7Pg="; + sha256 = "sha256-DkZRRjnTWziAL6WSPy5V8fgjpRO2g3Ew25j3F47pDnk="; }; - vendorSha256 = "sha256-TY7l5ttLKC3rqZ2kcy0l2gRXZg3vRrZBNzYsGerPe0k="; + vendorSha256 = "sha256-kioicA4vdWuv0mvpjZRH0r1EuosS06Q3hIEkxdV4/1A="; doCheck = false; diff --git a/pkgs/applications/networking/cluster/k0sctl/default.nix b/pkgs/applications/networking/cluster/k0sctl/default.nix index b552af837bd0..689922515de5 100644 --- a/pkgs/applications/networking/cluster/k0sctl/default.nix +++ b/pkgs/applications/networking/cluster/k0sctl/default.nix @@ -5,13 +5,13 @@ buildGoModule rec { pname = "k0sctl"; - version = "0.10.4"; + version = "0.11.4"; src = fetchFromGitHub { owner = "k0sproject"; repo = pname; rev = "v${version}"; - sha256 = "sha256-22jZWRnymIYN1LlGOo8abVx8DTUe9VK1xAHddLknt6A="; + sha256 = "sha256-Fk1aYSa3LqzxiHtlzH5pcNtodOprjfnCFh4UMqCa6Rc="; }; vendorSha256 = "sha256-N4cU9wzBRZn71mZHkNDXKgSXvlN2QFS6K4MtlR25DJc="; diff --git a/pkgs/applications/networking/cluster/kn/default.nix b/pkgs/applications/networking/cluster/kn/default.nix index a41c3c0ad35b..411efb6e527e 100644 --- a/pkgs/applications/networking/cluster/kn/default.nix +++ b/pkgs/applications/networking/cluster/kn/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "kn"; - version = "0.26.0"; + version = "0.27.0"; src = fetchFromGitHub { owner = "knative"; repo = "client"; rev = "v${version}"; - sha256 = "sha256-hquxv1BluR535WvMtJlVyP7JuARDNGDjPAbdSSj2juo="; + sha256 = "sha256-nuSx+JKXBgkVwuy6RMZc8pxDv5WjXN3+5pIudazTttc="; }; vendorSha256 = null; diff --git a/pkgs/applications/networking/cluster/kube-score/default.nix b/pkgs/applications/networking/cluster/kube-score/default.nix index 707abd5e2bf4..6ef24ded1a67 100644 --- a/pkgs/applications/networking/cluster/kube-score/default.nix +++ b/pkgs/applications/networking/cluster/kube-score/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "kube-score"; - version = "1.12.0"; + version = "1.13.0"; src = fetchFromGitHub { owner = "zegl"; repo = pname; rev = "v${version}"; - sha256 = "sha256-FZbq7f8Urx3tlJOBPnPyp1enFsmtrxqNjR42CTNo6GI="; + sha256 = "sha256-QAtsXNmR+Sg9xmvP7x6b2jAJkUcL/sMYk8i5CSzjVos="; }; - vendorSha256 = "sha256-8Rg57Uj/hdNqAj40MKZ/5PObRkdsInbsRT1ZkRqGTfo="; + vendorSha256 = "sha256-kPYvkovzQDmoB67TZHCKZ5jtW6pN3gHxBPKAU8prbgo="; meta = with lib; { description = "Kubernetes object analysis with recommendations for improved reliability and security"; diff --git a/pkgs/applications/networking/cluster/kube3d/default.nix b/pkgs/applications/networking/cluster/kube3d/default.nix index 2c571ff83a83..b30d6999470c 100644 --- a/pkgs/applications/networking/cluster/kube3d/default.nix +++ b/pkgs/applications/networking/cluster/kube3d/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "kube3d"; - version = "5.0.0"; + version = "5.0.3"; src = fetchFromGitHub { owner = "rancher"; repo = "k3d"; rev = "v${version}"; - sha256 = "1pkrcjr78xxw3idmyzpkbx0rp20972dl44bzwkkp06milrzsq27i"; + sha256 = "sha256-BUQG+Nq5BsL+4oBksL8Im9CtNFvwuaW/HebMp9VoORo="; }; vendorSha256 = null; diff --git a/pkgs/applications/networking/cluster/kubebuilder/default.nix b/pkgs/applications/networking/cluster/kubebuilder/default.nix index eb29cba7de88..02c1c834781a 100644 --- a/pkgs/applications/networking/cluster/kubebuilder/default.nix +++ b/pkgs/applications/networking/cluster/kubebuilder/default.nix @@ -4,19 +4,20 @@ , makeWrapper , git , go +, gnumake }: buildGoModule rec { pname = "kubebuilder"; - version = "3.1.0"; + version = "3.2.0"; src = fetchFromGitHub { owner = "kubernetes-sigs"; repo = "kubebuilder"; rev = "v${version}"; - sha256 = "0bl5ff2cplal6hg75800crhyviamk1ws85sq60h4zg21hzf21y68"; + sha256 = "sha256-V/g2RHnZPa/9hkVG5WVXmbx6hnJAwUEyyUX/Q3OR2DM="; }; - vendorSha256 = "0zxyd950ksjswja64rfri5v2yaalfg6qmq8215ildgrcavl9974n"; + vendorSha256 = "sha256-bTCLuAo5xXNoafjGpjKLKlKVKB29PEFwdPu9+qjvufs="; subPackages = ["cmd"]; @@ -33,7 +34,7 @@ buildGoModule rec { postInstall = '' mv $out/bin/cmd $out/bin/kubebuilder wrapProgram $out/bin/kubebuilder \ - --prefix PATH : ${lib.makeBinPath [ go ]} + --prefix PATH : ${lib.makeBinPath [ go gnumake ]} ''; allowGoReference = true; diff --git a/pkgs/applications/networking/cluster/kubecfg/default.nix b/pkgs/applications/networking/cluster/kubecfg/default.nix index 5efee961b424..0169442e1bfe 100644 --- a/pkgs/applications/networking/cluster/kubecfg/default.nix +++ b/pkgs/applications/networking/cluster/kubecfg/default.nix @@ -2,13 +2,13 @@ buildGoPackage rec { pname = "kubecfg"; - version = "0.21.0"; + version = "0.22.0"; src = fetchFromGitHub { owner = "bitnami"; repo = "kubecfg"; rev = "v${version}"; - sha256 = "sha256-Wu7+Xmb7ha3OG37DzLg2+/Sr9hB5oD3OIkC9h9Fa4QA="; + sha256 = "sha256-8U/A4F4DboS46ftpuk5fQGT2Y0V+X0y0L3/o4x8qpnY="; }; goPackagePath = "github.com/bitnami/kubecfg"; diff --git a/pkgs/applications/networking/cluster/kubeconform/default.nix b/pkgs/applications/networking/cluster/kubeconform/default.nix index 7249c2a5cef4..29a8388bd5cc 100644 --- a/pkgs/applications/networking/cluster/kubeconform/default.nix +++ b/pkgs/applications/networking/cluster/kubeconform/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "kubeconform"; - version = "0.4.10"; + version = "0.4.12"; src = fetchFromGitHub { owner = "yannh"; repo = pname; rev = "v${version}"; - sha256 = "sha256-D1/ljIOc5vK6HcYmk0WNnIRGBt1vJk9dGxl5GjhKhuA="; + sha256 = "sha256-03eGWuDV/GS2YgDQ7LaqonU7K/ohI8sQD4dXbJGXeXw="; }; vendorSha256 = null; diff --git a/pkgs/applications/networking/cluster/kubectl-evict-pod/default.nix b/pkgs/applications/networking/cluster/kubectl-evict-pod/default.nix new file mode 100644 index 000000000000..bd160db33cb8 --- /dev/null +++ b/pkgs/applications/networking/cluster/kubectl-evict-pod/default.nix @@ -0,0 +1,22 @@ +{ lib, buildGoModule, fetchFromGitHub }: + +buildGoModule rec { + pname = "kubectl-evict-pod"; + version = "0.0.10"; + + src = fetchFromGitHub { + owner = "rajatjindal"; + repo = pname; + rev = "v${version}"; + sha256 = "sha256-Z4fJzU317p7K+klcDQAukXAfZOpHd3PlH5fKO0PgKHA="; + }; + + vendorSha256 = "sha256-8VTrywlzrzoBEi/xOqkwhGW/R2B2oGqgh01Gv9FcW80="; + + meta = with lib; { + description = "This plugin evicts the given pod and is useful for testing pod disruption budget rules"; + homepage = "https://github.com/rajatjindal/kubectl-evict-pod"; + license = licenses.asl20; + maintainers = [ maintainers.j4m3s ]; + }; +} diff --git a/pkgs/applications/networking/cluster/kubedb-cli/default.nix b/pkgs/applications/networking/cluster/kubedb-cli/default.nix index 655150580b58..cbf14f43d260 100644 --- a/pkgs/applications/networking/cluster/kubedb-cli/default.nix +++ b/pkgs/applications/networking/cluster/kubedb-cli/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "kubedb-cli"; - version = "0.21.0"; + version = "0.22.0"; src = fetchFromGitHub { owner = "kubedb"; repo = "cli"; rev = "v${version}"; - sha256 = "sha256-7e1VQ9uXNj6Lmnl1IXHLcADSLuK7Jgiww8acxtD4xFM="; + sha256 = "sha256-pAvaScbwGJMW3iFS26D71nImWsXcEVx7ONUP82f6QDQ="; }; vendorSha256 = null; diff --git a/pkgs/applications/networking/cluster/kubernetes/default.nix b/pkgs/applications/networking/cluster/kubernetes/default.nix index 13b15da38cde..c974b830344b 100644 --- a/pkgs/applications/networking/cluster/kubernetes/default.nix +++ b/pkgs/applications/networking/cluster/kubernetes/default.nix @@ -21,13 +21,13 @@ stdenv.mkDerivation rec { pname = "kubernetes"; - version = "1.22.2"; + version = "1.22.3"; src = fetchFromGitHub { owner = "kubernetes"; repo = "kubernetes"; rev = "v${version}"; - sha256 = "sha256-O+FY9wJ0fztO7i5qJfw+cfhfBgaMWKX7IBBXJV4uuCk="; + sha256 = "sha256-yXis1nq36MO/RnYLxOYBs6xnaTf9lk+VJBzSamrHcEU="; }; nativeBuildInputs = [ removeReferencesTo makeWrapper which go rsync installShellFiles ]; diff --git a/pkgs/applications/networking/cluster/lens/default.nix b/pkgs/applications/networking/cluster/lens/default.nix index 6e04391d7a8a..985ae1763236 100644 --- a/pkgs/applications/networking/cluster/lens/default.nix +++ b/pkgs/applications/networking/cluster/lens/default.nix @@ -2,13 +2,13 @@ let pname = "lens"; - version = "5.1.3"; - build = "${version}-latest.20210722.1"; + version = "5.2.6"; + build = "${version}-latest.20211104.1"; name = "${pname}-${version}"; src = fetchurl { url = "https://api.k8slens.dev/binaries/Lens-${build}.x86_64.AppImage"; - sha256 = "1iwwyqpn1x1m8n22f99snlhcbcr65i4przx697hlbpmnm40dw7q9"; + sha256 = "1lkxzgwrgafraimpnciv89fs6r399275vb73drxlg5z83acacf5z"; name="${pname}.AppImage"; }; diff --git a/pkgs/applications/networking/cluster/levant/default.nix b/pkgs/applications/networking/cluster/levant/default.nix new file mode 100644 index 000000000000..ff91caf4095e --- /dev/null +++ b/pkgs/applications/networking/cluster/levant/default.nix @@ -0,0 +1,28 @@ +{ lib, buildGoModule, fetchFromGitHub }: + +buildGoModule rec { + pname = "levant"; + version = "0.3.0"; + + src = fetchFromGitHub { + owner = "hashicorp"; + repo = "levant"; + rev = "v${version}"; + sha256 = "9M7a4i+DPKb1H9jOEVAvhvYxGwtj3dK/40n4GSy4Rqo="; + }; + + vendorSha256 = "5JlrgmIfhX0rPR72sUkFcofw/iIbIaca359GN9C9dhU="; + + runVend = true; + + # The tests try to connect to a Nomad cluster. + doCheck = false; + + meta = with lib; { + description = "An open source templating and deployment tool for HashiCorp Nomad jobs"; + homepage = "https://github.com/hashicorp/levant"; + license = licenses.mpl20; + maintainers = with maintainers; [ max-niederman ]; + platforms = platforms.unix; + }; +} diff --git a/pkgs/applications/networking/cluster/nerdctl/default.nix b/pkgs/applications/networking/cluster/nerdctl/default.nix index 2a6d642d0c98..874a6fdecc4f 100644 --- a/pkgs/applications/networking/cluster/nerdctl/default.nix +++ b/pkgs/applications/networking/cluster/nerdctl/default.nix @@ -10,16 +10,16 @@ buildGoModule rec { pname = "nerdctl"; - version = "0.12.1"; + version = "0.13.0"; src = fetchFromGitHub { owner = "containerd"; repo = pname; rev = "v${version}"; - sha256 = "sha256-FRu1h6DT43rPaa9dcgz83w9K+xtzJgB4l/eTu+Fbb+c="; + sha256 = "sha256-uyLY2yH/6J0rtra0brBATadPqrNyyuCcaGfOrng9h4Y="; }; - vendorSha256 = "sha256-QFACe1/5MVbXKTknEyqjWclEQgJSZAJ/QljhLq/tWe4="; + vendorSha256 = "sha256-r7xzvntTIJocdYMQpFXunI2XV65eRG+piEEzS5N2xsY="; nativeBuildInputs = [ makeWrapper installShellFiles ]; @@ -35,7 +35,9 @@ buildGoModule rec { --prefix CNI_PATH : "${cni-plugins}/bin" installShellCompletion --cmd nerdctl \ - --bash <($out/bin/nerdctl completion bash) + --bash <($out/bin/nerdctl completion bash) \ + --fish <($out/bin/nerdctl completion fish) \ + --zsh <($out/bin/nerdctl completion zsh) ''; doInstallCheck = true; diff --git a/pkgs/applications/networking/cluster/nixops/default.nix b/pkgs/applications/networking/cluster/nixops/default.nix index 9eabf0ac1b5d..87c4c2d6b2c8 100644 --- a/pkgs/applications/networking/cluster/nixops/default.nix +++ b/pkgs/applications/networking/cluster/nixops/default.nix @@ -23,7 +23,7 @@ let ''; meta = old.meta // { - homepage = https://github.com/NixOS/nixops; + homepage = "https://github.com/NixOS/nixops"; description = "NixOS cloud provisioning and deployment tool"; maintainers = with lib.maintainers; [ adisbladis aminechikhaoui eelco rob domenkozar ]; platforms = lib.platforms.unix; diff --git a/pkgs/applications/networking/cluster/nixops/poetry-git-overlay.nix b/pkgs/applications/networking/cluster/nixops/poetry-git-overlay.nix index 75b9471c9e09..b542a1eff955 100644 --- a/pkgs/applications/networking/cluster/nixops/poetry-git-overlay.nix +++ b/pkgs/applications/networking/cluster/nixops/poetry-git-overlay.nix @@ -15,8 +15,8 @@ self: super: { _: { src = pkgs.fetchgit { url = "https://github.com/NixOS/nixops-aws.git"; - rev = "371aedeb7fd53b8978a60dd7c37d3a6c38101c48"; - sha256 = "15jz9x3ra3hsh6xj4cbri1fvvjk2rplnnhnccz7qc6f176b5r01j"; + rev = "44f774272bd522cc7e87074c056f2225f771ded0"; + sha256 = "0x9pv186nkcfisr1c1nxw8gpazkrg546dfl95140rif0xzw3pizx"; }; } ); diff --git a/pkgs/applications/networking/cluster/nixops/poetry.lock b/pkgs/applications/networking/cluster/nixops/poetry.lock index 87d8fce2f23c..642b063368c6 100644 --- a/pkgs/applications/networking/cluster/nixops/poetry.lock +++ b/pkgs/applications/networking/cluster/nixops/poetry.lock @@ -38,14 +38,14 @@ python-versions = "*" [[package]] name = "boto3" -version = "1.18.64" +version = "1.19.9" description = "The AWS SDK for Python" category = "main" optional = false python-versions = ">= 3.6" [package.dependencies] -botocore = ">=1.21.64,<1.22.0" +botocore = ">=1.22.9,<1.23.0" jmespath = ">=0.7.1,<1.0.0" s3transfer = ">=0.5.0,<0.6.0" @@ -54,7 +54,7 @@ crt = ["botocore[crt] (>=1.21.0,<2.0a0)"] [[package]] name = "botocore" -version = "1.21.64" +version = "1.22.9" description = "Low-level, data-driven core of boto 3." category = "main" optional = false @@ -173,7 +173,7 @@ python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*" [[package]] name = "libvirt-python" -version = "7.8.0" +version = "7.9.0" description = "The libvirt virtualization API python binding" category = "main" optional = false @@ -228,7 +228,7 @@ typing-extensions = "^3.7.4" type = "git" url = "https://github.com/NixOS/nixops-aws.git" reference = "master" -resolved_reference = "371aedeb7fd53b8978a60dd7c37d3a6c38101c48" +resolved_reference = "44f774272bd522cc7e87074c056f2225f771ded0" [[package]] name = "nixops-encrypted-links" @@ -344,14 +344,14 @@ resolved_reference = "81a1c2ef424dcf596a97b2e46a58ca73a1dd1ff8" [[package]] name = "packaging" -version = "21.0" +version = "21.2" description = "Core utilities for Python packages" category = "dev" optional = false python-versions = ">=3.6" [package.dependencies] -pyparsing = ">=2.0.2" +pyparsing = ">=2.0.2,<3" [[package]] name = "pluggy" @@ -621,12 +621,12 @@ boto = [ {file = "boto-2.49.0.tar.gz", hash = "sha256:ea0d3b40a2d852767be77ca343b58a9e3a4b00d9db440efb8da74b4e58025e5a"}, ] boto3 = [ - {file = "boto3-1.18.64-py3-none-any.whl", hash = "sha256:b4d6299dd16a3042b7750cde00fe38d57fd59d3ce242308ba8488618ca931694"}, - {file = "boto3-1.18.64.tar.gz", hash = "sha256:9223b433b0d3b74f2b9574fb3c384048998343ccd6b608044318a7f9b904f661"}, + {file = "boto3-1.19.9-py3-none-any.whl", hash = "sha256:efa4aea4d30e93f8913a5731ab4de7b6d2020ee77cdde7e61bfae56670da1a14"}, + {file = "boto3-1.19.9.tar.gz", hash = "sha256:2fe4edec0e02705059e6baac52e29f97fae6086bf8b817e6ca0e49b48c0fbbf2"}, ] botocore = [ - {file = "botocore-1.21.64-py3-none-any.whl", hash = "sha256:d57287377e4c7c7d7bf6c5fa39e02994de1d99fced9492a58a00e5a54bae1cca"}, - {file = "botocore-1.21.64.tar.gz", hash = "sha256:0a30dca4dad7d43fd856e671ace95f9afc4726caa1e22f0ae11b654fc76e0c7d"}, + {file = "botocore-1.22.9-py3-none-any.whl", hash = "sha256:612d26b58f790d267cc7714e82262104b681db799655b6dd6b64fcd9caf08bef"}, + {file = "botocore-1.22.9.tar.gz", hash = "sha256:7b59367bace96595e9feeed9765c7178278c55531b2b9e07b7618911e9f0a00b"}, ] certifi = [ {file = "certifi-2021.10.8-py2.py3-none-any.whl", hash = "sha256:d62a0163eb4c2344ac042ab2bdf75399a71a2d8c7d47eac2e2ee91b9d6339569"}, @@ -699,6 +699,8 @@ cryptography = [ {file = "cryptography-3.4.8-cp36-abi3-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = 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a/pkgs/applications/networking/cluster/popeye/default.nix +++ b/pkgs/applications/networking/cluster/popeye/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "popeye"; - version = "0.9.7"; + version = "0.9.8"; src = fetchFromGitHub { rev = "v${version}"; owner = "derailed"; repo = "popeye"; - sha256 = "sha256-oft1zLLd5TP8S9GMjp5kYaoPoOYnbhJwL2wBerkhp+c="; + sha256 = "sha256-uGy2BbZS4SGT0w9ICYPUIfFawSvIVMsEezPfPAPQU/Q="; }; ldflags = [ @@ -21,6 +21,11 @@ buildGoModule rec { doCheck = true; + doInstallCheck = true; + installCheckPhase = '' + $out/bin/popeye version | grep ${version} > /dev/null + ''; + meta = with lib; { description = "A Kubernetes cluster resource sanitizer"; homepage = "https://github.com/derailed/popeye"; diff --git a/pkgs/applications/networking/cluster/terraform-providers/lxd/default.nix b/pkgs/applications/networking/cluster/terraform-providers/lxd/default.nix index ab3d07a7f47b..4ea2194a03a3 100644 --- a/pkgs/applications/networking/cluster/terraform-providers/lxd/default.nix +++ b/pkgs/applications/networking/cluster/terraform-providers/lxd/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "terraform-provider-lxd"; - version = "1.5.0"; + version = "1.6.0"; src = fetchFromGitHub { owner = "sl1pm4t"; repo = "terraform-provider-lxd"; rev = "v${version}"; - sha256 = "sha256-ikI8LQ6qawdeUSb1Ee03H409DQw2M4QtsIxAESxXNRI="; + sha256 = "sha256-fl9sYoyrVV6LvnIrnyAXy18QLLazQajjcLO1JWsqAR4="; }; - vendorSha256 = "sha256-IjpC7bFodqdrqVUEQdZBc6N8py5+t2kRYvcQiPr7CHc="; + vendorSha256 = "sha256-ervfG/BAaF4M+BXsp0eCDM6nPWQOS3pthClhArsUoYc="; doCheck = false; diff --git a/pkgs/applications/networking/cluster/terraform/default.nix b/pkgs/applications/networking/cluster/terraform/default.nix index 8dfc8c701e3a..036ee7d8243f 100644 --- a/pkgs/applications/networking/cluster/terraform/default.nix +++ b/pkgs/applications/networking/cluster/terraform/default.nix @@ -195,9 +195,9 @@ rec { }; terraform_1_0 = mkTerraform { - version = "1.0.10"; - sha256 = "1jcgp9q99785m85754ipza7b3dd3g58adpnyh5w2imqj01cas6mb"; - vendorSha256 = "00cl42w1mzsi9qd09wydfvp5f2h7lxaay6s2dv0mf47k6h7prf42"; + version = "1.0.11"; + sha256 = "0k05s4zm16vksq21f1q00y2lzfgi5fhs1ygydm8jk0srs9x8ask7"; + vendorSha256 = "1brgghl7fb26va4adix443rl1dkjaqrr4jkknxjkcaps0knqp172"; patches = [ ./provider-path-0_15.patch ]; passthru = { inherit plugins; }; }; diff --git a/pkgs/applications/networking/cluster/terranix/default.nix b/pkgs/applications/networking/cluster/terranix/default.nix index d06393718a4b..a8541336b3de 100644 --- a/pkgs/applications/networking/cluster/terranix/default.nix +++ b/pkgs/applications/networking/cluster/terranix/default.nix @@ -1,28 +1,31 @@ -{ lib, stdenv, fetchFromGitHub, ... }: +{ stdenv, lib, fetchFromGitHub, jq, nix, makeWrapper }: stdenv.mkDerivation rec { pname = "terranix"; - version = "2.4.0"; + version = "2.5.0"; src = fetchFromGitHub { owner = "mrVanDalo"; repo = "terranix"; rev = version; - sha256 = "sha256-3N4a5VhZqIgJW11w8oJKJ9T8mhfwEM33kEwV/zZkCs8="; + sha256 = "sha256-HDiyJGgyDUoLnpL8N+wDm3cM/vEfYYc/p4N1kKH/kLk="; }; + nativeBuildInputs = [ makeWrapper ]; + installPhase = '' - mkdir -p $out + mkdir -p $out/{bin,core,modules,lib} mv bin core modules lib $out/ + + wrapProgram $out/bin/terranix-doc-json \ + --prefix PATH : ${lib.makeBinPath [ jq nix ]} ''; meta = with lib; { description = "A NixOS like terraform-json generator"; homepage = "https://terranix.org"; license = licenses.gpl3; - platforms = platforms.linux; + platforms = platforms.unix; maintainers = with maintainers; [ mrVanDalo ]; }; - } - diff --git a/pkgs/applications/networking/cluster/tilt/default.nix b/pkgs/applications/networking/cluster/tilt/default.nix index eee449de53e3..cd8d1f703d2d 100644 --- a/pkgs/applications/networking/cluster/tilt/default.nix +++ b/pkgs/applications/networking/cluster/tilt/default.nix @@ -5,13 +5,13 @@ buildGoModule rec { /* Do not use "dev" as a version. If you do, Tilt will consider itself running in development environment and try to serve assets from the source tree, which is not there once build completes. */ - version = "0.22.9"; + version = "0.22.15"; src = fetchFromGitHub { owner = "tilt-dev"; repo = pname; rev = "v${version}"; - sha256 = "sha256-h19Cj4ztgypT/j1gB+PbvgDJ7jlJ3CYPEbK62tJeMss="; + sha256 = "sha256-Aim80bg1vGRkiIlVqDa4qOFQ+mwSOL75HOPYQYovYlE="; }; vendorSha256 = null; diff --git a/pkgs/applications/networking/dropbox/default.nix b/pkgs/applications/networking/dropbox/default.nix index 845d0f2779c2..9c4340fffedb 100644 --- a/pkgs/applications/networking/dropbox/default.nix +++ b/pkgs/applications/networking/dropbox/default.nix @@ -26,6 +26,7 @@ let genericName = "File Synchronizer"; categories = "Network;FileTransfer;"; startupNotify = "false"; + icon = "dropbox"; }; in diff --git a/pkgs/applications/networking/feedreaders/newsflash/default.nix b/pkgs/applications/networking/feedreaders/newsflash/default.nix index 012d00026cf5..fdecf62c6a43 100644 --- a/pkgs/applications/networking/feedreaders/newsflash/default.nix +++ b/pkgs/applications/networking/feedreaders/newsflash/default.nix @@ -21,19 +21,19 @@ stdenv.mkDerivation rec { pname = "newsflash"; - version = "1.4.3"; + version = "1.5.1"; src = fetchFromGitLab { owner = "news-flash"; repo = "news_flash_gtk"; - rev = "v.${version}"; - hash = "sha256-c/zT+FNRDu7jdooNTEYbeG9jLrL+9txe+aC7nSy4bB0="; + rev = version; + hash = "sha256-fLG7oYt+gdl3Lwnu6c7VLJWSHCFY5LyNeDKoUNGg3Yw="; }; cargoDeps = rustPlatform.fetchCargoTarball { inherit src; name = "${pname}-${version}"; - hash = "sha256-yTElaPSoTiJpfIGzuNJCWxVzdWBzim5rt0N2r0ARhvM="; + hash = "sha256-dQlbK3SfY6p1xinroXz5wcaBbq2LuDM9sMlfJ6ueTTg="; }; patches = [ @@ -93,7 +93,7 @@ stdenv.mkDerivation rec { description = "A modern feed reader designed for the GNOME desktop"; homepage = "https://gitlab.com/news-flash/news_flash_gtk"; license = licenses.gpl3Plus; - maintainers = with maintainers; [ kira-bruneau ]; + maintainers = with maintainers; [ kira-bruneau stunkymonkey ]; platforms = platforms.unix; }; } diff --git a/pkgs/applications/networking/flexget/default.nix b/pkgs/applications/networking/flexget/default.nix index 22fd08e3f4a8..c4f54a756b76 100644 --- a/pkgs/applications/networking/flexget/default.nix +++ b/pkgs/applications/networking/flexget/default.nix @@ -2,14 +2,14 @@ python3Packages.buildPythonApplication rec { pname = "flexget"; - version = "3.1.149"; + version = "3.1.150"; # Fetch from GitHub in order to use `requirements.in` src = fetchFromGitHub { owner = "flexget"; repo = "flexget"; rev = "v${version}"; - sha256 = "1yrb8cfrc6y7gpfgzn0q6ldx9vk06qp229wjs4q8rccp72p6d6gg"; + sha256 = "sha256-tSA1pDGzIX2uIEWM0xV53jj1vBcJFMNCRakczs7Hue4="; }; postPatch = '' diff --git a/pkgs/applications/networking/ftp/taxi/default.nix b/pkgs/applications/networking/ftp/taxi/default.nix index c6015a669638..411031f605ed 100644 --- a/pkgs/applications/networking/ftp/taxi/default.nix +++ b/pkgs/applications/networking/ftp/taxi/default.nix @@ -52,15 +52,16 @@ stdenv.mkDerivation rec { patchShebangs meson/post_install.py ''; + passthru.updateScript = nix-update-script { + attrPath = pname; + }; + meta = with lib; { homepage = "https://github.com/Alecaddd/taxi"; description = "The FTP Client that drives you anywhere"; license = licenses.lgpl3Plus; maintainers = with maintainers; [ AndersonTorres ] ++ teams.pantheon.members; platforms = platforms.linux; - }; - - passthru.updateScript = nix-update-script { - attrPath = pname; + mainProgram = "com.github.alecaddd.taxi"; }; } diff --git a/pkgs/applications/networking/instant-messengers/element/element-desktop-package.json b/pkgs/applications/networking/instant-messengers/element/element-desktop-package.json index fbc61c23b5c4..235955ac14e5 100644 --- a/pkgs/applications/networking/instant-messengers/element/element-desktop-package.json +++ b/pkgs/applications/networking/instant-messengers/element/element-desktop-package.json @@ -2,7 +2,7 @@ "name": "element-desktop", "productName": "Element", "main": "lib/electron-main.js", - "version": "1.9.3", + "version": "1.9.4", "description": "A feature-rich client for Matrix.org", "author": "Element", "repository": { @@ -54,7 +54,7 @@ "@types/minimist": "^1.2.1", "@typescript-eslint/eslint-plugin": "^4.17.0", "@typescript-eslint/parser": "^4.17.0", - "allchange": "^1.0.2", + "allchange": "^1.0.5", "asar": "^2.0.1", "chokidar": "^3.5.2", "electron": "13.5", diff --git a/pkgs/applications/networking/instant-messengers/element/element-desktop.nix b/pkgs/applications/networking/instant-messengers/element/element-desktop.nix index dd7c6f0c573e..bce13052e5ac 100644 --- a/pkgs/applications/networking/instant-messengers/element/element-desktop.nix +++ b/pkgs/applications/networking/instant-messengers/element/element-desktop.nix @@ -16,7 +16,7 @@ }: let - pinData = (builtins.fromJSON (builtins.readFile ./pin.json)); + pinData = lib.importJSON ./pin.json; executableName = "element-desktop"; electron_exec = if stdenv.isDarwin then "${electron}/Applications/Electron.app/Contents/MacOS/Electron" else "${electron}/bin/electron"; in diff --git a/pkgs/applications/networking/instant-messengers/element/element-web.nix b/pkgs/applications/networking/instant-messengers/element/element-web.nix index 33af19a9a576..fae96e8e5e7a 100644 --- a/pkgs/applications/networking/instant-messengers/element/element-web.nix +++ b/pkgs/applications/networking/instant-messengers/element/element-web.nix @@ -1,7 +1,7 @@ { lib, stdenv, fetchurl, writeText, jq, conf ? {} }: let - pinData = (builtins.fromJSON (builtins.readFile ./pin.json)); + pinData = lib.importJSON ./pin.json; noPhoningHome = { disable_guests = true; # disable automatic guest account registration at matrix.org piwik = false; # disable analytics diff --git a/pkgs/applications/networking/instant-messengers/element/keytar/default.nix b/pkgs/applications/networking/instant-messengers/element/keytar/default.nix index 432d69ac7a47..ae9627afe30d 100644 --- a/pkgs/applications/networking/instant-messengers/element/keytar/default.nix +++ b/pkgs/applications/networking/instant-messengers/element/keytar/default.nix @@ -2,7 +2,7 @@ , fixup_yarn_lock, yarn, pkg-config, libsecret, xcbuild, Security, AppKit, fetchYarnDeps }: let - pinData = (builtins.fromJSON (builtins.readFile ./pin.json)); + pinData = lib.importJSON ./pin.json; in stdenv.mkDerivation rec { pname = "keytar"; diff --git a/pkgs/applications/networking/instant-messengers/element/pin.json b/pkgs/applications/networking/instant-messengers/element/pin.json index dfb9791b3aa9..6d47eb9fe711 100644 --- a/pkgs/applications/networking/instant-messengers/element/pin.json +++ b/pkgs/applications/networking/instant-messengers/element/pin.json @@ -1,6 +1,6 @@ { - "version": "1.9.3", - "desktopSrcHash": "Pb9iiCYtmuD6DzdvgY8c6pCFdVAxIIUZTWLCa7y5RMI=", - "desktopYarnHash": "0iwbszhaxaxggymixljzjb2gqrsij67fwakxhd3yj9g1zds49ghh", - "webHash": "06lpb8i7fyimm06y6h3ngh19bx416if9lvs2ah2112vx28hs14zp" + "version": "1.9.4", + "desktopSrcHash": "sTY55DWeEKV3Ma5DTr4W6K6BjrE019aY8LRk/5f8pPM=", + "desktopYarnHash": "0axz0d5qryd0k89lrziah1r6j1154c1cibf1qsjk1azlri3k4298", + "webHash": "141iz2jcvwyv3fpi63ddi697qzkk6jg100d0lz6iam98m8m35g24" } diff --git a/pkgs/applications/networking/instant-messengers/element/seshat/default.nix b/pkgs/applications/networking/instant-messengers/element/seshat/default.nix index ff3b2ba9134d..de38c7a90bad 100644 --- a/pkgs/applications/networking/instant-messengers/element/seshat/default.nix +++ b/pkgs/applications/networking/instant-messengers/element/seshat/default.nix @@ -1,7 +1,7 @@ { lib, stdenv, rustPlatform, fetchFromGitHub, callPackage, sqlcipher, nodejs-14_x, python3, yarn, fixup_yarn_lock, CoreServices, fetchYarnDeps }: let - pinData = (builtins.fromJSON (builtins.readFile ./pin.json)); + pinData = lib.importJSON ./pin.json; in rustPlatform.buildRustPackage rec { pname = "seshat-node"; diff --git a/pkgs/applications/networking/instant-messengers/ferdi/default.nix b/pkgs/applications/networking/instant-messengers/ferdi/default.nix index 05ba66f93703..a1c63cc9837f 100644 --- a/pkgs/applications/networking/instant-messengers/ferdi/default.nix +++ b/pkgs/applications/networking/instant-messengers/ferdi/default.nix @@ -17,10 +17,10 @@ in mkFranzDerivation' rec { pname = "ferdi"; name = "Ferdi"; - version = "5.6.2"; + version = "5.6.3"; src = fetchurl { url = "https://github.com/getferdi/ferdi/releases/download/v${version}/ferdi_${version}_amd64.deb"; - sha256 = "sha256-8rB7SnaIaeCXAaKELNO1CnxpV8TyeKRCVamwpATeia4="; + sha256 = "sha256-cfX3x0ZRxT6sxMm20uL8lKhMbrI/yiCHVrBTPKIlDSE="; }; extraBuildInputs = [ xorg.libxshmfence ]; meta = with lib; { diff --git a/pkgs/applications/networking/instant-messengers/jami/client-gnome.nix b/pkgs/applications/networking/instant-messengers/jami/client-gnome.nix index 019ffb468d27..8cb748f54059 100644 --- a/pkgs/applications/networking/instant-messengers/jami/client-gnome.nix +++ b/pkgs/applications/networking/instant-messengers/jami/client-gnome.nix @@ -39,6 +39,10 @@ stdenv.mkDerivation { dontWrapGApps = true; preFixup = '' qtWrapperArgs+=("''${gappsWrapperArgs[@]}") + # Users that set CLUTTER_BACKEND=wayland in their default environment will + # encounter a segfault due to: + # https://git.jami.net/savoirfairelinux/jami-client-gnome/-/issues/1100 . + qtWrapperArgs+=("--unset" "CLUTTER_BACKEND") ''; buildInputs = [ diff --git a/pkgs/applications/networking/instant-messengers/jami/daemon.nix b/pkgs/applications/networking/instant-messengers/jami/daemon.nix index 456ca85ed12c..2fe6d7191e74 100644 --- a/pkgs/applications/networking/instant-messengers/jami/daemon.nix +++ b/pkgs/applications/networking/instant-messengers/jami/daemon.nix @@ -49,6 +49,10 @@ let ++ lib.optionals stdenv.isLinux (readLinesToList ./config/ffmpeg_args_linux) ++ lib.optionals (stdenv.isx86_32 || stdenv.isx86_64) (readLinesToList ./config/ffmpeg_args_x86); outputs = [ "out" "doc" ]; + meta = old.meta // { + # undefined reference to `ff_nlmeans_init_aarch64' + broken = stdenv.isAarch64; + }; }); pjsip-jami = pjsip.overrideAttrs (old: diff --git a/pkgs/applications/networking/instant-messengers/kdeltachat/default.nix b/pkgs/applications/networking/instant-messengers/kdeltachat/default.nix index a7cd9116195b..c9cbdd379864 100644 --- a/pkgs/applications/networking/instant-messengers/kdeltachat/default.nix +++ b/pkgs/applications/networking/instant-messengers/kdeltachat/default.nix @@ -14,13 +14,13 @@ mkDerivation rec { pname = "kdeltachat"; - version = "unstable-2021-09-10"; + version = "unstable-2021-10-27"; src = fetchFromSourcehut { owner = "~link2xt"; repo = "kdeltachat"; - rev = "40092aa096bac7e279eb5a4cc97758bac484236c"; - sha256 = "0vmsbxx4hxh35v1lbj82vq2w8z8inj83xpf24wzlbdr9inlbmym4"; + rev = "e1201cdcce4311061643d90cc0132745023a82d2"; + sha256 = "04xqvyj4rzgl9r7sfjjw1kc3vql30c80rwppff2zr5aijr15fgjj"; }; nativeBuildInputs = [ diff --git a/pkgs/applications/networking/instant-messengers/matrix-commander/default.nix b/pkgs/applications/networking/instant-messengers/matrix-commander/default.nix index 2ebf762c418b..ad3248fabba9 100644 --- a/pkgs/applications/networking/instant-messengers/matrix-commander/default.nix +++ b/pkgs/applications/networking/instant-messengers/matrix-commander/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation { pname = "matrix-commander"; - version = "unstable-2021-05-26"; + version = "unstable-2021-08-05"; src = fetchFromGitHub { owner = "8go"; repo = "matrix-commander"; - rev = "06b4738bc74ee86fb3ac88c04b8230abf82e7421"; - sha256 = "1skpq3xfnz11m298qnsw68xv391p5qg47flagzsk86pnzi841vc1"; + rev = "7ab3fd9a0ef4eb19d882cb3701d2025b4d41b63a"; + sha256 = "sha256-WWf7GbJxGlqIdsS1d0T1DO0WN2RBepHGgJrl/nt7UIg="; }; buildInputs = [ @@ -20,6 +20,7 @@ stdenv.mkDerivation { pillow urllib3 aiofiles + notify2 ]))]; installPhase = '' diff --git a/pkgs/applications/networking/instant-messengers/mcabber/default.nix b/pkgs/applications/networking/instant-messengers/mcabber/default.nix index 7c5bff940848..2ca94953c4f6 100644 --- a/pkgs/applications/networking/instant-messengers/mcabber/default.nix +++ b/pkgs/applications/networking/instant-messengers/mcabber/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchurl, openssl, ncurses, pkg-config, glib, loudmouth, libotr +{ lib, stdenv, fetchurl, fetchpatch, openssl, ncurses, pkg-config, glib, loudmouth, libotr , gpgme }: @@ -11,6 +11,16 @@ stdenv.mkDerivation rec { sha256 = "0q1i5acyghsmzas88qswvki8kkk2nfpr8zapgnxbcd3lwcxl38f4"; }; + patches = [ + # Pull upstream patch for ncurses-6.3. + (fetchpatch { + name = "ncurses-6.3.patch"; + url = "https://github.com/McKael/mcabber/commit/5a0893d69023b77b7671731defbdca5d47731130.patch"; + sha256 = "01bc23z0mva9l9jv587sq2r9w3diachgkmb9ad99hlzgj02fmq4v"; + stripLen = 1; + }) + ]; + nativeBuildInputs = [ pkg-config ]; buildInputs = [ openssl ncurses glib loudmouth libotr gpgme ]; diff --git a/pkgs/applications/networking/instant-messengers/nheko/default.nix b/pkgs/applications/networking/instant-messengers/nheko/default.nix index b097864af431..ffd04fd829ed 100644 --- a/pkgs/applications/networking/instant-messengers/nheko/default.nix +++ b/pkgs/applications/networking/instant-messengers/nheko/default.nix @@ -18,7 +18,6 @@ , mtxclient , boost17x , spdlog -, fmt , olm , pkg-config , nlohmann_json @@ -52,7 +51,6 @@ mkDerivation rec { libsecret lmdb spdlog - fmt cmark qtbase qtmultimedia diff --git a/pkgs/applications/networking/instant-messengers/pantalaimon/default.nix b/pkgs/applications/networking/instant-messengers/pantalaimon/default.nix index 153819fc8417..9722d3b89e32 100644 --- a/pkgs/applications/networking/instant-messengers/pantalaimon/default.nix +++ b/pkgs/applications/networking/instant-messengers/pantalaimon/default.nix @@ -1,7 +1,7 @@ { lib, stdenv, buildPythonApplication, fetchFromGitHub, pythonOlder, attrs, aiohttp, appdirs, click, keyring, Logbook, peewee, janus, prompt-toolkit, matrix-nio, dbus-python, pydbus, notify2, pygobject3, - setuptools, installShellFiles, + setuptools, installShellFiles, nixosTests, pytest, faker, pytest-aiohttp, aioresponses, @@ -63,6 +63,10 @@ buildPythonApplication rec { installManPage docs/man/*.[1-9] ''; + passthru.tests = { + inherit (nixosTests) pantalaimon; + }; + meta = with lib; { description = "An end-to-end encryption aware Matrix reverse proxy daemon"; homepage = "https://github.com/matrix-org/pantalaimon"; diff --git a/pkgs/applications/networking/instant-messengers/pidgin-plugins/purple-lurch/default.nix b/pkgs/applications/networking/instant-messengers/pidgin-plugins/purple-lurch/default.nix index 2170aac16e05..c0497ed86ce1 100644 --- a/pkgs/applications/networking/instant-messengers/pidgin-plugins/purple-lurch/default.nix +++ b/pkgs/applications/networking/instant-messengers/pidgin-plugins/purple-lurch/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "purple-lurch"; - version = "0.6.7"; + version = "0.7.0"; src = fetchFromGitHub { owner = "gkdr"; repo = "lurch"; rev = "v${version}"; - sha256 = "029jjqinsfhpv0zgji3sv1cyk54fn9qp176fwy97d1clf0vflxrz"; + sha256 = "sha256-yyzotKL1Z4B2BxloJndJKemONMPLG9pVDVe2K5AL05g="; fetchSubmodules = true; }; diff --git a/pkgs/applications/networking/instant-messengers/pidgin/default.nix b/pkgs/applications/networking/instant-messengers/pidgin/default.nix index a7ea5bee3089..bd6febeaf9d1 100644 --- a/pkgs/applications/networking/instant-messengers/pidgin/default.nix +++ b/pkgs/applications/networking/instant-messengers/pidgin/default.nix @@ -1,27 +1,18 @@ -{ stdenv, fetchurl, makeWrapper, pkg-config, gtk2, gtk2-x11 -, gtkspell2, aspell -, gst_all_1, startupnotification, gettext -, perlPackages, libxml2, nss, nspr, farstream -, libXScrnSaver, avahi, dbus, dbus-glib, intltool, libidn -, lib, python3, libICE, libXext, libSM -, libgnt, ncurses -, cyrus_sasl ? null -, openssl ? null -, gnutls ? null -, libgcrypt ? null -, plugins, symlinkJoin -, cacert +{ callPackage, stdenv, fetchurl, makeWrapper, pkg-config, gtk2, gtk2-x11, gtkspell2, aspell +, gst_all_1, libstartup_notification, gettext, perlPackages, libxml2, nss +, nspr, farstream, libXScrnSaver, avahi, dbus, dbus-glib, intltool, libidn +, lib, python3, libICE, libXext, libSM, libgnt, ncurses, cyrus_sasl, openssl +, gnutls, libgcrypt, symlinkJoin, cacert, plugins, withOpenssl, withGnutls, withCyrus_sasl ? true }: # FIXME: clean the mess around choosing the SSL library (nss by default) let unwrapped = stdenv.mkDerivation rec { pname = "pidgin"; - majorVersion = "2"; - version = "${majorVersion}.14.8"; + version = "2.14.8"; src = fetchurl { - url = "mirror://sourceforge/pidgin/${pname}-${version}.tar.bz2"; + url = "mirror://sourceforge/pidgin/pidgin-${version}.tar.bz2"; sha256 = "1jjc15pfyw3012q5ffv7q4r88wv07ndqh0wakyxa2k0w4708b01z"; }; @@ -32,7 +23,7 @@ let unwrapped = stdenv.mkDerivation rec { buildInputs = let python-with-dbus = python3.withPackages (pp: with pp; [ dbus-python ]); in [ - aspell startupnotification + aspell libstartup_notification gst_all_1.gstreamer gst_all_1.gst-plugins-base gst_all_1.gst-plugins-good libxml2 nss nspr libXScrnSaver python-with-dbus @@ -40,17 +31,16 @@ let unwrapped = stdenv.mkDerivation rec { libICE libXext libSM cyrus_sasl libgnt ncurses # optional: build finch - the console UI ] - ++ (lib.optional (openssl != null) openssl) - ++ (lib.optional (gnutls != null) gnutls) - ++ (lib.optional (libgcrypt != null) libgcrypt) - ++ (lib.optionals (stdenv.isLinux) [gtk2 gtkspell2 farstream]) - ++ (lib.optional (stdenv.isDarwin) gtk2-x11); + ++ lib.optional withOpenssl openssl + ++ lib.optionals withGnutls [ gnutls libgcrypt ] + ++ lib.optionals stdenv.isLinux [ gtk2 gtkspell2 farstream ] + ++ lib.optional stdenv.isDarwin gtk2-x11; propagatedBuildInputs = [ pkg-config gettext ] ++ (with perlPackages; [ perl XMLParser ]) - ++ (lib.optional (stdenv.isLinux) gtk2) - ++ (lib.optional (stdenv.isDarwin) gtk2-x11); + ++ lib.optional stdenv.isLinux gtk2 + ++ lib.optional stdenv.isDarwin gtk2-x11; patches = [ ./pidgin-makefile.patch ./add-search-path.patch ]; @@ -66,9 +56,9 @@ let unwrapped = stdenv.mkDerivation rec { "--disable-tcl" "--disable-gevolution" ] - ++ (lib.optionals (cyrus_sasl != null) [ "--enable-cyrus-sasl=yes" ]) - ++ (lib.optionals (gnutls != null) ["--enable-gnutls=yes" "--enable-nss=no"]) - ++ (lib.optionals (stdenv.isDarwin) ["--disable-gtkspell" "--disable-vv"]); + ++ lib.optionals withCyrus_sasl [ "--enable-cyrus-sasl=yes" ] + ++ lib.optionals withGnutls ["--enable-gnutls=yes" "--enable-nss=no"] + ++ lib.optionals stdenv.isDarwin ["--disable-gtkspell" "--disable-vv"]; enableParallelBuilding = true; @@ -90,12 +80,12 @@ let unwrapped = stdenv.mkDerivation rec { ''; passthru = { - makePluginPath = lib.makeSearchPathOutput "lib" "lib/purple-${majorVersion}"; + makePluginPath = lib.makeSearchPathOutput "lib" "lib/purple-${lib.versions.major version}"; }; meta = with lib; { description = "Multi-protocol instant messaging client"; - homepage = "http://pidgin.im"; + homepage = "https://pidgin.im/"; license = licenses.gpl2Plus; platforms = platforms.unix; maintainers = [ maintainers.vcunat ]; @@ -103,7 +93,7 @@ let unwrapped = stdenv.mkDerivation rec { }; in if plugins == [] then unwrapped - else import ./wrapper.nix { - inherit makeWrapper symlinkJoin plugins; + else callPackage ./wrapper.nix { + inherit plugins; pidgin = unwrapped; } diff --git a/pkgs/applications/networking/instant-messengers/pidgin/wrapper.nix b/pkgs/applications/networking/instant-messengers/pidgin/wrapper.nix index 095f838fe981..d5641c24fb07 100644 --- a/pkgs/applications/networking/instant-messengers/pidgin/wrapper.nix +++ b/pkgs/applications/networking/instant-messengers/pidgin/wrapper.nix @@ -1,4 +1,4 @@ -{ symlinkJoin, pidgin, makeWrapper, plugins }: +{ lib, symlinkJoin, pidgin, makeWrapper, plugins }: let extraArgs = map (x: x.wrapArgs or "") plugins; @@ -11,10 +11,10 @@ in symlinkJoin { postBuild = '' wrapProgram $out/bin/pidgin \ - --suffix-each PURPLE_PLUGIN_PATH ':' "$out/lib/purple-${pidgin.majorVersion} $out/lib/pidgin" \ + --suffix-each PURPLE_PLUGIN_PATH ':' "$out/lib/purple-${lib.versions.major pidgin.version} $out/lib/pidgin" \ ${toString extraArgs} wrapProgram $out/bin/finch \ - --suffix-each PURPLE_PLUGIN_PATH ':' "$out/lib/purple-${pidgin.majorVersion}" \ + --suffix-each PURPLE_PLUGIN_PATH ':' "$out/lib/purple-${lib.versions.major pidgin.version}" \ ${toString extraArgs} ''; } diff --git a/pkgs/applications/networking/instant-messengers/schildichat/schildichat-web.nix b/pkgs/applications/networking/instant-messengers/schildichat/schildichat-web.nix index 015c44e428bd..c1bfc98047be 100644 --- a/pkgs/applications/networking/instant-messengers/schildichat/schildichat-web.nix +++ b/pkgs/applications/networking/instant-messengers/schildichat/schildichat-web.nix @@ -8,7 +8,7 @@ }: let - pinData = builtins.fromJSON (builtins.readFile ./pin.json); + pinData = lib.importJSON ./pin.json; noPhoningHome = { disable_guests = true; # disable automatic guest account registration at matrix.org }; diff --git a/pkgs/applications/networking/instant-messengers/signal-cli/default.nix b/pkgs/applications/networking/instant-messengers/signal-cli/default.nix index 33a746e0395b..59ff3554ebf5 100644 --- a/pkgs/applications/networking/instant-messengers/signal-cli/default.nix +++ b/pkgs/applications/networking/instant-messengers/signal-cli/default.nix @@ -2,12 +2,12 @@ stdenv.mkDerivation rec { pname = "signal-cli"; - version = "0.9.0"; + version = "0.9.2"; # Building from source would be preferred, but is much more involved. src = fetchurl { url = "https://github.com/AsamK/signal-cli/releases/download/v${version}/signal-cli-${version}.tar.gz"; - sha256 = "sha256-wk8kk+PG0nw2OE7mccGjP435SEytStRy1unxg6EqP/8="; + sha256 = "sha256-CumrIlOPmvQ3x7Ua5I2G7ZlTSAbhLgAQMPUg4I5WCeQ="; }; buildInputs = lib.optionals stdenv.isLinux [ libmatthew_java dbus dbus_java ]; diff --git a/pkgs/applications/networking/instant-messengers/signal-desktop/default.nix b/pkgs/applications/networking/instant-messengers/signal-desktop/default.nix index 01a214bed233..c8797423bedb 100644 --- a/pkgs/applications/networking/instant-messengers/signal-desktop/default.nix +++ b/pkgs/applications/networking/instant-messengers/signal-desktop/default.nix @@ -58,7 +58,7 @@ let }); in stdenv.mkDerivation rec { pname = "signal-desktop"; - version = "5.22.0"; # Please backport all updates to the stable channel. + version = "5.23.1"; # Please backport all updates to the stable channel. # All releases have a limited lifetime and "expire" 90 days after the release. # When releases "expire" the application becomes unusable until an update is # applied. The expiration date for the current release can be extracted with: @@ -68,7 +68,7 @@ in stdenv.mkDerivation rec { src = fetchurl { url = "https://updates.signal.org/desktop/apt/pool/main/s/signal-desktop/signal-desktop_${version}_amd64.deb"; - sha256 = "1y88qw57wk187fjb05zqvagv4pamc8171xwvznqb2k0vclsg82j8"; + sha256 = "0scbnkkbaqyqiz6bfvhdrc0yqnccjsf66iggjpa7kjyk3cy61s6c"; }; nativeBuildInputs = [ diff --git a/pkgs/applications/networking/instant-messengers/slack/default.nix b/pkgs/applications/networking/instant-messengers/slack/default.nix index 4f876013903e..1e2d87f031e5 100644 --- a/pkgs/applications/networking/instant-messengers/slack/default.nix +++ b/pkgs/applications/networking/instant-messengers/slack/default.nix @@ -45,14 +45,14 @@ let pname = "slack"; - x86_64-darwin-version = "4.20.0"; - x86_64-darwin-sha256 = "1argl690i4dgz5ih02zg9v4zrlzm282wmibnc6p7xy5jisd5g79w"; + x86_64-darwin-version = "4.21.1"; + x86_64-darwin-sha256 = "1xhhll7mbz3f98xd2pzhyv3a49sam2v9fmvglmsvnkrmqppzsr4g"; - x86_64-linux-version = "4.20.0"; - x86_64-linux-sha256 = "1r8w8s3y74lh4klsmzq2d3f0h721b3a2b53nx8v7b0s6j8w0g0mh"; + x86_64-linux-version = "4.21.1"; + x86_64-linux-sha256 = "0mmpvrg2gfjarhrh0cy6axmhbx8v8rkn51gyp9xhr9ll9zrjpvjq"; - aarch64-darwin-version = "4.20.0"; - aarch64-darwin-sha256 = "1argl690i4dgz5ih02zg9v4zrlzm282wmibnc6p7xy5jisd5g79w"; + aarch64-darwin-version = "4.21.1"; + aarch64-darwin-sha256 = "1rkixwg0b0nqp7wzvm24qskc9q3cl43fqfbkv6i2qkrrhpyr3zqw"; version = { x86_64-darwin = x86_64-darwin-version; diff --git a/pkgs/applications/networking/instant-messengers/telegram/tdesktop/default.nix b/pkgs/applications/networking/instant-messengers/telegram/tdesktop/default.nix index 5cbb2d974701..0764c484ec9a 100644 --- a/pkgs/applications/networking/instant-messengers/telegram/tdesktop/default.nix +++ b/pkgs/applications/networking/instant-messengers/telegram/tdesktop/default.nix @@ -66,7 +66,7 @@ let in mkDerivation rec { pname = "telegram-desktop"; - version = "3.1.9"; + version = "3.1.11"; # Note: Update via pkgs/applications/networking/instant-messengers/telegram/tdesktop/update.py # Telegram-Desktop with submodules @@ -75,7 +75,7 @@ mkDerivation rec { repo = "tdesktop"; rev = "v${version}"; fetchSubmodules = true; - sha256 = "1nmakl9jxmw3k8gka56cyywbjwv06a5983dy6h9jhkkq950fn33s"; + sha256 = "0hpcsraw3gx37wk3r88q51qf68ny0kb3kd6slnklwf22d1jqr3fn"; }; postPatch = '' diff --git a/pkgs/applications/networking/instant-messengers/telegram/tdesktop/tg_owt.nix b/pkgs/applications/networking/instant-messengers/telegram/tdesktop/tg_owt.nix index 60baf734aa1a..878fea994db3 100644 --- a/pkgs/applications/networking/instant-messengers/telegram/tdesktop/tg_owt.nix +++ b/pkgs/applications/networking/instant-messengers/telegram/tdesktop/tg_owt.nix @@ -8,13 +8,13 @@ stdenv.mkDerivation { pname = "tg_owt"; - version = "unstable-2021-09-15"; + version = "unstable-2021-10-21"; src = fetchFromGitHub { owner = "desktop-app"; repo = "tg_owt"; - rev = "575fb17d2853c43329e45f6693370f5e41668055"; - sha256 = "17lhy5g4apdakspv75zm070k7003crf1i80m8wy8f631s86v30md"; + rev = "d578c760dc6f1ae5f0f3bb5317b0b2ed04b79138"; + sha256 = "12lr50nma3j9df55sxi6p48yhn9yxrwzz5yrx7r29p8p4fv1c75w"; fetchSubmodules = true; }; diff --git a/pkgs/applications/networking/instant-messengers/tensor/default.nix b/pkgs/applications/networking/instant-messengers/tensor/default.nix index 477e5442b829..943ec299cdbd 100644 --- a/pkgs/applications/networking/instant-messengers/tensor/default.nix +++ b/pkgs/applications/networking/instant-messengers/tensor/default.nix @@ -1,17 +1,24 @@ -{ mkDerivation, lib, stdenv, fetchgit, qtbase, qtquickcontrols, qmake -, makeDesktopItem }: +{ mkDerivation +, lib +, stdenv +, fetchgit +, qtbase +, qtquickcontrols +, qmake +, makeDesktopItem +}: # we now have libqmatrixclient so a future version of tensor that supports it # should use that mkDerivation rec { - pname = "tensor-git"; - version = "2017-02-21"; + pname = "tensor"; + version = "unstable-2017-02-21"; src = fetchgit { - url = "https://github.com/davidar/tensor.git"; - rev = "f3f3056d770d7fb4a21c610cee7936ee900569f5"; - sha256 = "19in8c7a2hxsx2c4lj540w5c3pn1882645m21l91mcriynqr67k9"; + url = "https://github.com/davidar/tensor.git"; + rev = "f3f3056d770d7fb4a21c610cee7936ee900569f5"; + sha256 = "19in8c7a2hxsx2c4lj540w5c3pn1882645m21l91mcriynqr67k9"; fetchSubmodules = true; }; @@ -19,14 +26,14 @@ mkDerivation rec { nativeBuildInputs = [ qmake ]; desktopItem = makeDesktopItem { - name = "tensor"; - exec = "@bin@"; - icon = "tensor.png"; - comment = meta.description; + name = "tensor"; + exec = "@bin@"; + icon = "tensor.png"; + comment = meta.description; desktopName = "Tensor Matrix Client"; genericName = meta.description; - categories = "Chat;Utility"; - mimeType = "application/x-chat"; + categories = "Chat;Utility"; + mimeType = "application/x-chat"; }; installPhase = if stdenv.isDarwin then '' diff --git a/pkgs/applications/networking/instant-messengers/toxic/default.nix b/pkgs/applications/networking/instant-messengers/toxic/default.nix index 3082748a3518..a6d6cac4ac76 100644 --- a/pkgs/applications/networking/instant-messengers/toxic/default.nix +++ b/pkgs/applications/networking/instant-messengers/toxic/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchFromGitHub, libsodium, ncurses, curl +{ lib, stdenv, fetchFromGitHub, fetchpatch, libsodium, ncurses, curl , libtoxcore, openal, libvpx, freealut, libconfig, pkg-config, libopus , qrencode, gdk-pixbuf, libnotify }: @@ -13,6 +13,15 @@ stdenv.mkDerivation rec { sha256 = "sha256-5jLXXI+IMrYa7ZtdMjJrah1zB5TJ3GdHfvcMd1TYE4E="; }; + patches = [ + # Pending for upstream inclusion fix for ncurses-6.3 compatibility. + (fetchpatch { + name = "ncurses-6.3.patch"; + url = "https://github.com/JFreegman/toxic/commit/41e93adbdbd56db065166af5a6676a7996e9e451.patch"; + sha256 = "sha256-LYEseB5FmXFNifa1RZUxhkXeWlkEEMm3ASD55IoUPa0="; + }) + ]; + makeFlags = [ "PREFIX=$(out)"]; installFlags = [ "PREFIX=$(out)"]; diff --git a/pkgs/applications/networking/instant-messengers/turses/default.nix b/pkgs/applications/networking/instant-messengers/turses/default.nix index 256e026a060e..42dd9f835c9a 100644 --- a/pkgs/applications/networking/instant-messengers/turses/default.nix +++ b/pkgs/applications/networking/instant-messengers/turses/default.nix @@ -1,7 +1,30 @@ -{ lib, fetchpatch, python3Packages }: +{ lib +, fetchpatch +, fetchFromGitHub +, python3 +}: -with lib; -with python3Packages; +let + py = python3.override { + packageOverrides = self: super: { + + # Support for later tweepy releases is missing + # https://github.com/louipc/turses/issues/12 + tweepy = super.tweepy.overridePythonAttrs (oldAttrs: rec { + version = "3.10.0"; + + src = fetchFromGitHub { + owner = "tweepy"; + repo = "tweepy"; + rev = "v${version}"; + sha256 = "0k4bdlwjna6f1k19jki4xqgckrinkkw8b9wihzymr1l04rwd05nw"; + }; + doCheck = false; + }); + }; + }; +in +with py.pkgs; buildPythonPackage rec { pname = "turses"; @@ -12,8 +35,18 @@ buildPythonPackage rec { sha256 = "15mkhm3b5ka42h8qph0mhh8izfc1200v7651c62k7ldcs50ib9j6"; }; - checkInputs = [ mock pytest coverage tox ]; - propagatedBuildInputs = [ urwid tweepy future ]; + propagatedBuildInputs = with py.pkgs; [ + urwid + tweepy + future + ]; + + checkInputs = with py.pkgs; [ + mock + pytest + coverage + tox + ]; LC_ALL = "en_US.UTF-8"; @@ -29,6 +62,17 @@ buildPythonPackage rec { }) ]; + postPatch = '' + substituteInPlace setup.py \ + --replace "urwid==1.3.0" "urwid" \ + --replace "future==0.14.3" "future" \ + --replace "tweepy==3.3.0" "tweepy" + substituteInPlace tests/test_config.py \ + --replace "config.generate_config_file.assert_called_once()" "assert config.generate_config_file.call_count == 1" + substituteInPlace tests/test_meta.py \ + --replace "self.observer.update.assert_called_once()" "assert self.observer.update.call_count == 1" + ''; + checkPhase = '' TMP_TURSES=`echo turses-$RANDOM` mkdir $TMP_TURSES @@ -36,18 +80,10 @@ buildPythonPackage rec { rm -rf $TMP_TURSES ''; - postPatch = '' - sed -i -e 's|urwid==1.3.0|urwid==${getVersion urwid}|' setup.py - sed -i -e "s|future==0.14.3|future==${getVersion future}|" setup.py - sed -i -e "s|tweepy==3.3.0|tweepy==${getVersion tweepy}|" setup.py - sed -i -e "s|config.generate_config_file.assert_called_once()|assert config.generate_config_file.call_count == 1|" tests/test_config.py - sed -i -e "s|self.observer.update.assert_called_once()|assert self.observer.update.call_count == 1|" tests/test_meta.py - ''; - meta = with lib; { - homepage = "https://github.com/louipc/turses"; description = "A Twitter client for the console"; - license = licenses.gpl3; + homepage = "https://github.com/louipc/turses"; + license = licenses.gpl3Only; maintainers = with maintainers; [ ]; platforms = platforms.unix; }; diff --git a/pkgs/applications/networking/instant-messengers/whatsapp-for-linux/default.nix b/pkgs/applications/networking/instant-messengers/whatsapp-for-linux/default.nix index 4e61f39cac58..0d5355a1eb4d 100644 --- a/pkgs/applications/networking/instant-messengers/whatsapp-for-linux/default.nix +++ b/pkgs/applications/networking/instant-messengers/whatsapp-for-linux/default.nix @@ -1,25 +1,26 @@ { fetchFromGitHub , lib , stdenv -, gtkmm3 -, webkitgtk , cmake -, pkg-config -, libappindicator-gtk3 +, glib-networking , gst_all_1 +, gtkmm3 +, libappindicator-gtk3 , pcre +, pkg-config +, webkitgtk , wrapGAppsHook }: stdenv.mkDerivation rec { pname = "whatsapp-for-linux"; - version = "1.2.1"; + version = "1.3.0"; src = fetchFromGitHub { owner = "eneshecan"; repo = pname; rev = "v${version}"; - sha256 = "sha256-dEJRufOqlY+DnJdUaG5WP9hR1qO7KxR6MjKWq1SJB8A="; + sha256 = "sha256-VdkCjzmZqP/ZVY1H9FxBGe5rN0nZEPZbMp3MVKL6WLc="; }; nativeBuildInputs = [ @@ -29,14 +30,15 @@ stdenv.mkDerivation rec { ]; buildInputs = [ - gtkmm3 - webkitgtk - libappindicator-gtk3 + glib-networking + gst_all_1.gst-libav + gst_all_1.gst-plugins-bad gst_all_1.gst-plugins-base gst_all_1.gst-plugins-good - gst_all_1.gst-plugins-bad - gst_all_1.gst-libav + gtkmm3 + libappindicator-gtk3 pcre + webkitgtk ]; meta = with lib; { diff --git a/pkgs/applications/networking/irc/srain/default.nix b/pkgs/applications/networking/irc/srain/default.nix new file mode 100644 index 000000000000..282506c5e0af --- /dev/null +++ b/pkgs/applications/networking/irc/srain/default.nix @@ -0,0 +1,60 @@ +{ lib +, stdenv +, fetchFromGitHub +, pkg-config +, gtk3 +, libconfig +, libsoup +, libsecret +, openssl +, gettext +, glib +, glib-networking +, appstream-glib +, dbus-glib +, python3Packages +, meson +, ninja +, wrapGAppsHook +}: + +stdenv.mkDerivation rec { + pname = "srain"; + version = "1.3.0"; + + src = fetchFromGitHub { + owner = "SrainApp"; + repo = "srain"; + rev = version; + sha256 = "14s0h5wgvlkdylnjis2fa7m835142jzw0d0yqjnir1wqnwmq1rld"; + }; + + nativeBuildInputs = [ + meson + ninja + pkg-config + gettext + appstream-glib + wrapGAppsHook + python3Packages.sphinx + ]; + + buildInputs = [ + gtk3 + glib + glib-networking + dbus-glib + libconfig + libsoup + libsecret + openssl + ]; + + meta = with lib; { + description = "Modern IRC client written in GTK"; + homepage = "https://srain.im"; + license = licenses.gpl3Plus; + platforms = platforms.linux; + maintainers = with maintainers; [ rewine ]; + }; +} diff --git a/pkgs/applications/networking/irc/tiny/default.nix b/pkgs/applications/networking/irc/tiny/default.nix index 253143d00047..fde521c53d58 100644 --- a/pkgs/applications/networking/irc/tiny/default.nix +++ b/pkgs/applications/networking/irc/tiny/default.nix @@ -10,21 +10,16 @@ rustPlatform.buildRustPackage rec { pname = "tiny"; - version = "0.9.0"; + version = "0.10.0"; src = fetchFromGitHub { owner = "osa1"; repo = pname; rev = "v${version}"; - sha256 = "gKyHR3FZHDybaP38rqB8/gvr8T+mDO4QQxoTtWS+TlE="; + sha256 = "177d1x4z0mh0p7c5ldq70cn1j3pac50d8cil2ni50hl49c3x6yy1"; }; - cargoSha256 = "0ChfW8vaqC2kCp4lpS0HOvhuihPw9G5TOmgwKzVDfws="; - - # Fix Cargo.lock version. Remove with the next release. - cargoPatches = [ - ./fix-Cargo.lock.patch - ]; + cargoSha256 = "05q3f1wp48mwkz8n0102rwb6jzrgpx3dlbxzf3zcw8r1mblgzim1"; cargoBuildFlags = lib.optionals stdenv.isLinux [ "--features=desktop-notifications" ]; @@ -34,7 +29,7 @@ rustPlatform.buildRustPackage rec { meta = with lib; { description = "A console IRC client"; homepage = "https://github.com/osa1/tiny"; - changelog = "https://github.com/osa1/tiny/blob/v${version}/CHANGELOG.md"; + changelog = "https://github.com/osa1/tiny/raw/v${version}/CHANGELOG.md"; license = licenses.mit; maintainers = with maintainers; [ Br1ght0ne vyp ]; }; diff --git a/pkgs/applications/networking/irc/tiny/fix-Cargo.lock.patch b/pkgs/applications/networking/irc/tiny/fix-Cargo.lock.patch deleted file mode 100644 index 71bc4709bece..000000000000 --- a/pkgs/applications/networking/irc/tiny/fix-Cargo.lock.patch +++ /dev/null @@ -1,13 +0,0 @@ -diff --git a/Cargo.lock b/Cargo.lock -index 3a184dc..0e58cb1 100644 ---- a/Cargo.lock -+++ b/Cargo.lock -@@ -1023,7 +1023,7 @@ dependencies = [ - - [[package]] - name = "tiny" --version = "0.8.0" -+version = "0.9.0" - dependencies = [ - "clap", - "dirs 3.0.1", diff --git a/pkgs/applications/networking/mailreaders/notmuch/default.nix b/pkgs/applications/networking/mailreaders/notmuch/default.nix index a618a696d0fe..df5c9de29d17 100644 --- a/pkgs/applications/networking/mailreaders/notmuch/default.nix +++ b/pkgs/applications/networking/mailreaders/notmuch/default.nix @@ -11,11 +11,11 @@ stdenv.mkDerivation rec { pname = "notmuch"; - version = "0.34"; + version = "0.34.1"; src = fetchurl { url = "https://notmuchmail.org/releases/notmuch-${version}.tar.xz"; - sha256 = "1dk16xa9q7adp1jaswxvw4p92f4h5mg0zkrh3zv8gqxn88amisc3"; + sha256 = "05nq64gp8vnrwrl22d60v7ixgdhm9339ajhcdfkq0ll1qiycyyj5"; }; nativeBuildInputs = [ diff --git a/pkgs/applications/networking/mailreaders/thunderbird-bin/release_sources.nix b/pkgs/applications/networking/mailreaders/thunderbird-bin/release_sources.nix index 5af24287c171..d53bcda2a69d 100644 --- a/pkgs/applications/networking/mailreaders/thunderbird-bin/release_sources.nix +++ b/pkgs/applications/networking/mailreaders/thunderbird-bin/release_sources.nix @@ -1,655 +1,655 @@ { - version = "91.2.1"; + version = "91.3.0"; sources = [ - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.2.1/linux-x86_64/af/thunderbird-91.2.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.3.0/linux-x86_64/af/thunderbird-91.3.0.tar.bz2"; locale = "af"; arch = "linux-x86_64"; - sha256 = "953e07d7198b8b13f312ef620caf6e232c361f78dd04ebd69c753f7b75e55f42"; + sha256 = "067592da3bdc40cb8a7d8f64e3c5d116575604f1305b8eac4b5b1cc7f79dccf0"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.2.1/linux-x86_64/ar/thunderbird-91.2.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.3.0/linux-x86_64/ar/thunderbird-91.3.0.tar.bz2"; locale = "ar"; arch = "linux-x86_64"; - sha256 = "29f34eac79855c01550a259d3663c662ec9bd259c0b20bf392efb0de1f44af8d"; + sha256 = "3a52d7c0e48496cd2259494196b0514412e922535877ddd322ceb82d02a47a39"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.2.1/linux-x86_64/ast/thunderbird-91.2.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.3.0/linux-x86_64/ast/thunderbird-91.3.0.tar.bz2"; locale = "ast"; arch = "linux-x86_64"; - sha256 = "284d8935a5527b58f84ba9acabc0a67c51a7e1587f843d8b0ec9555e6f6d8f4e"; + sha256 = "e07001f03b642887ae4a4e2415ce6bb50542d5af7cd8a9f0531081bb084e56eb"; 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} - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.2.1/linux-i686/kk/thunderbird-91.2.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.3.0/linux-i686/kk/thunderbird-91.3.0.tar.bz2"; locale = "kk"; arch = "linux-i686"; - sha256 = "29479a9970a622e23901c6022058d635874b41e24c7f5aef42536abc922dd1ea"; + sha256 = "8a973b47dfbe996d8e7dc894bb0cc0b473743eec0caf05f11646b3552c287516"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.2.1/linux-i686/ko/thunderbird-91.2.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.3.0/linux-i686/ko/thunderbird-91.3.0.tar.bz2"; locale = "ko"; arch = "linux-i686"; - sha256 = "f34050010ff533a1c3949b11ad51c6902d6efec8c92904b2906ab80f95291e6d"; + sha256 = "6f7a992d226028a6398932c8bcaf9d522ff72cfbb60336875b83e74d22564967"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.2.1/linux-i686/lt/thunderbird-91.2.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.3.0/linux-i686/lt/thunderbird-91.3.0.tar.bz2"; locale = "lt"; arch = "linux-i686"; - sha256 = "be3e4c5bff078c2129d6f4e1a6a820efa62cce2750e3e1359dfba0ea93e58b5a"; + sha256 = "76cda4386e76388de5d0b660541f1ae5c40ef31609c329226e07573265b34c05"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.2.1/linux-i686/lv/thunderbird-91.2.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.3.0/linux-i686/lv/thunderbird-91.3.0.tar.bz2"; locale = "lv"; arch = "linux-i686"; - sha256 = "bd6ec1783bcd5efbf51f963eef3db42f71b50e8826fe4896dc7356d10f4eefce"; + sha256 = "9bc2b1358965e4bdaf875625296d2e40bc6f21709237b38011f82169937cf022"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.2.1/linux-i686/ms/thunderbird-91.2.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.3.0/linux-i686/ms/thunderbird-91.3.0.tar.bz2"; locale = "ms"; arch = "linux-i686"; - sha256 = "6279588bd47020c61250c211849b8fcbc4f480318a725090f316bb9f2099c31f"; + sha256 = "5860567197e95c1fbca7585796b34adaf453923be9e726ea33e54e390a7e800f"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.2.1/linux-i686/nb-NO/thunderbird-91.2.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.3.0/linux-i686/nb-NO/thunderbird-91.3.0.tar.bz2"; locale = "nb-NO"; arch = "linux-i686"; - sha256 = "0f0a0fb9f6556f4207e63a12e846d2917d8e221321b51ba34860094876c3528f"; + sha256 = "5b50ebc02d93303547704312f11e10a5470bcc116da55573f6d256ec90e5d5cc"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.2.1/linux-i686/nl/thunderbird-91.2.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.3.0/linux-i686/nl/thunderbird-91.3.0.tar.bz2"; locale = "nl"; arch = "linux-i686"; - sha256 = "2f3c40fffa081ec62396fc3b715331280603b38b6d5fe5f4b16de1ab6727a713"; + sha256 = "99756c19427ab548d6cd64a5805549ed51af95e41eaa97eff821bfea2b3691ee"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.2.1/linux-i686/nn-NO/thunderbird-91.2.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.3.0/linux-i686/nn-NO/thunderbird-91.3.0.tar.bz2"; locale = "nn-NO"; arch = "linux-i686"; - sha256 = "da9c9cc55abbd4f0679b53b6635868fb2a5f56165292a82903512058fa57f988"; + sha256 = "2888793a3490fbebd2148128662a63a7a482c7d770e8e4c4be3e725af5eb5c1c"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.2.1/linux-i686/pa-IN/thunderbird-91.2.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.3.0/linux-i686/pa-IN/thunderbird-91.3.0.tar.bz2"; locale = "pa-IN"; arch = "linux-i686"; - sha256 = "065db90edaec65fc7cb240d7793afae97110761bca269ffc4e172d0fd5dcbeae"; + sha256 = "a4d6ffa089fc309e208508986f91283a6c839f8cee109e073d3d6a0d25397292"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.2.1/linux-i686/pl/thunderbird-91.2.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.3.0/linux-i686/pl/thunderbird-91.3.0.tar.bz2"; locale = "pl"; arch = "linux-i686"; - sha256 = "4e0a43f1633728dbb25dcd60218b31fa45131a8189f94d8ebeff202bc251ac55"; + sha256 = "7a9f677c39700e7b1212047327f1b080004c42c3094eb4bf7a487b39a65458df"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.2.1/linux-i686/pt-BR/thunderbird-91.2.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.3.0/linux-i686/pt-BR/thunderbird-91.3.0.tar.bz2"; locale = "pt-BR"; arch = "linux-i686"; - sha256 = "a013acdee4b7e983c71dd39607103f1794b967addc57c538a8ca94437551743c"; + sha256 = "0967d12e7cd9d2fd4d55dc75bfb02fb07ca61c60d2f0ccb295b8c264cb565957"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.2.1/linux-i686/pt-PT/thunderbird-91.2.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.3.0/linux-i686/pt-PT/thunderbird-91.3.0.tar.bz2"; locale = "pt-PT"; arch = "linux-i686"; - sha256 = "4bf7b530490f1fc1d031040790a568bee42206f393f8c13994551e6ff4d1ede2"; + sha256 = "1be6b84a42c215928de2dbb36bd9e0f01303eb1ba4224126c12a98205316746c"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.2.1/linux-i686/rm/thunderbird-91.2.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.3.0/linux-i686/rm/thunderbird-91.3.0.tar.bz2"; locale = "rm"; arch = "linux-i686"; - sha256 = "829ffbd9402f5cf80cdd8b001081d6f67628c842cc3c73f8191b6f6ff1d54d52"; + sha256 = "54b4f955412f9c53d37188f42be5a7cc8ee1357458171d6134299145acde76d5"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.2.1/linux-i686/ro/thunderbird-91.2.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.3.0/linux-i686/ro/thunderbird-91.3.0.tar.bz2"; locale = "ro"; arch = "linux-i686"; - sha256 = "6bc72633a3b45faf2aa51627caf5674f1b05e16840b952f58f7f86ef6ad483b9"; + sha256 = "4f31a0eeafbe516c93b00b5ac5e7b06a35db471a19965955b8f25713984b7b9a"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.2.1/linux-i686/ru/thunderbird-91.2.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.3.0/linux-i686/ru/thunderbird-91.3.0.tar.bz2"; locale = "ru"; arch = "linux-i686"; - sha256 = "141787ba7f5aeb0faa2a33e0d84fda8fa8d31681c6fdd0e884a69cc339042048"; + sha256 = "247c78a1dc8d6013744de242efc6ddac6f2f3d10d86e1348769e90124f5eb6df"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.2.1/linux-i686/sk/thunderbird-91.2.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.3.0/linux-i686/sk/thunderbird-91.3.0.tar.bz2"; locale = "sk"; arch = "linux-i686"; - sha256 = "90363481a491a239e4c3da49bc87ed3ca795e4ce0eaf2239ac5a298e5d7abc10"; + sha256 = "73b69b08de497cc2c5e50e7226b7c6de61546b1198a6757b8a63c6399fd2a9e9"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.2.1/linux-i686/sl/thunderbird-91.2.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.3.0/linux-i686/sl/thunderbird-91.3.0.tar.bz2"; locale = "sl"; arch = "linux-i686"; - sha256 = "95e57777da6f9fcb41bb3116771be2e90b023315433d41e21884b34feb6a38e4"; + sha256 = "3d822e2c79d38e26353cb8810b8468580d2157b62aadcfca1d96874bb7ee0681"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.2.1/linux-i686/sq/thunderbird-91.2.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.3.0/linux-i686/sq/thunderbird-91.3.0.tar.bz2"; locale = "sq"; arch = "linux-i686"; - sha256 = "d7e0a12bd5c7edfb130e4defdc25b8776fb71722fb146cd5309d52405ad231bd"; + sha256 = "c8e185af246c6059e85554968fa91c1ff0477e824fdf05d1860dc36ff7dd8a47"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.2.1/linux-i686/sr/thunderbird-91.2.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.3.0/linux-i686/sr/thunderbird-91.3.0.tar.bz2"; locale = "sr"; arch = "linux-i686"; - sha256 = "b17dbc3424ce90c0360a75476d1d25568fb4e7c6e1e90a197ab332e5584cb88e"; + sha256 = "61da012cc5aa8dab7855deef3f26c20efdbca12c788caede60a4825289850b72"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.2.1/linux-i686/sv-SE/thunderbird-91.2.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.3.0/linux-i686/sv-SE/thunderbird-91.3.0.tar.bz2"; locale = "sv-SE"; arch = "linux-i686"; - sha256 = "027f7f817823e939261c05113b3cc5518b3fff1d061e66e8fcd5703504259f2b"; + sha256 = "064e2ca29bd5c1d63bae872d4419b537d5a75bec75a602847a115da15a0dcfae"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.2.1/linux-i686/th/thunderbird-91.2.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.3.0/linux-i686/th/thunderbird-91.3.0.tar.bz2"; locale = "th"; arch = "linux-i686"; - sha256 = "268473436cc5230bc60b38c0678eaa71c64b5f9c3780120df51c1063790e1855"; + sha256 = "791adf04802aca3323c4a7659a83ca3affa9b93c1ae9a011447d6ad638f256df"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.2.1/linux-i686/tr/thunderbird-91.2.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.3.0/linux-i686/tr/thunderbird-91.3.0.tar.bz2"; locale = "tr"; arch = "linux-i686"; - sha256 = "79bad44e8e9dd7962d67b395d27c046d84c50f3eb66c53bc10de8a9c3d94a059"; + sha256 = "494fa955b325df483902df74c99e0a5a24c50670bcac7f62d5da5989b4c3555f"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.2.1/linux-i686/uk/thunderbird-91.2.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.3.0/linux-i686/uk/thunderbird-91.3.0.tar.bz2"; locale = "uk"; arch = "linux-i686"; - sha256 = "c363f700537f3a466fb438ec4339b5e83b60c721faa647b4ab77c907ab9b1f21"; + sha256 = "aaf7fd5dd2c2ad95cf0ea5333a59e6f953e36ad2b19b0a24cd42075ff6a96e44"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.2.1/linux-i686/uz/thunderbird-91.2.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.3.0/linux-i686/uz/thunderbird-91.3.0.tar.bz2"; locale = "uz"; arch = "linux-i686"; - sha256 = "2de957d36eb6c2b5a7d33d6a06e9f4f1072981fd8530aa18d609a892f963c975"; + sha256 = "5ae7dee3ae3c33a0278c5b10401be741ed91d2cef3d00c9e6686d065830e0f32"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.2.1/linux-i686/vi/thunderbird-91.2.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.3.0/linux-i686/vi/thunderbird-91.3.0.tar.bz2"; locale = "vi"; arch = "linux-i686"; - sha256 = "5006d6c79aff928e307a92eb3867364f206ee1d872e275d3ebf63b9a4cf286de"; + sha256 = "455183213bfc0936a71c3f8fd35d4b753cfafb5c72df514232df97b2af75f10f"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.2.1/linux-i686/zh-CN/thunderbird-91.2.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.3.0/linux-i686/zh-CN/thunderbird-91.3.0.tar.bz2"; locale = "zh-CN"; arch = "linux-i686"; - sha256 = "4893ea232fa746efc32cb0d84800b46fbdffb49a13fbc244559ca0382561ebca"; + sha256 = "13b600caa35aae9e6d82b7969afeb6951f2d2824a4c5af33eecf7b004e421ebd"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.2.1/linux-i686/zh-TW/thunderbird-91.2.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.3.0/linux-i686/zh-TW/thunderbird-91.3.0.tar.bz2"; locale = "zh-TW"; arch = "linux-i686"; - sha256 = "37ad46134d268639514eeb267a89aeb20fc318bde923b9eb552c281b23ae153e"; + sha256 = "4f01236b849f03599df14efc1f4cf7519077b72697758f41c69ce84a084ac37e"; } ]; } diff --git a/pkgs/applications/networking/mailreaders/thunderbird/packages.nix b/pkgs/applications/networking/mailreaders/thunderbird/packages.nix index 9c0359ea558c..4bae5387255d 100644 --- a/pkgs/applications/networking/mailreaders/thunderbird/packages.nix +++ b/pkgs/applications/networking/mailreaders/thunderbird/packages.nix @@ -10,12 +10,12 @@ in rec { thunderbird = common rec { pname = "thunderbird"; - version = "91.2.1"; + version = "91.3.0"; application = "comm/mail"; binaryName = pname; src = fetchurl { url = "mirror://mozilla/thunderbird/releases/${version}/source/thunderbird-${version}.source.tar.xz"; - sha512 = "3152f20ad5f0fd3ce2c1672e91f07ab8921ffb5ecf487e6b0d7d7464445c8d8df106eea0bd8d912ffa84ab0ad403dfcfb19be97f50a015150c9091201a0dff6d"; + sha512 = "938de817ed2cad90f665559da1dfc266f34b6ca2e688ee364112edfdb1167183a8225132ed50b672ceb14402be933be82fd1ef8b46f103cdf1534a403fb472d9"; }; patches = [ ]; diff --git a/pkgs/applications/networking/msmtp/default.nix b/pkgs/applications/networking/msmtp/default.nix index d87d23be429c..3bcbdf0cf02b 100644 --- a/pkgs/applications/networking/msmtp/default.nix +++ b/pkgs/applications/networking/msmtp/default.nix @@ -9,11 +9,11 @@ let in stdenv.mkDerivation rec { pname = "msmtp"; - version = "1.8.18"; + version = "1.8.19"; src = fetchurl { url = "https://marlam.de/${pname}/releases/${pname}-${version}.tar.xz"; - sha256 = "sha256-FPxirzfr3MXtGaJFoF64N27+cBYRjwDJxZS8mZ1VYKU="; + sha256 = "sha256-NKHhmBF2h02+TuZu4NkQPJCYmqTc3Ehh5N4Fzn5EUms="; }; patches = [ @@ -26,8 +26,8 @@ in stdenv.mkDerivation rec { nativeBuildInputs = [ autoreconfHook pkg-config texinfo ]; - configureFlags = - [ "--sysconfdir=/etc" ] ++ lib.optional stdenv.isDarwin [ "--with-macosx-keyring" ]; + configureFlags = [ "--sysconfdir=/etc" "--with-libgsasl" ] + ++ lib.optional stdenv.isDarwin [ "--with-macosx-keyring" ]; postInstall = '' install -d $out/share/doc/${pname}/scripts diff --git a/pkgs/applications/networking/mullvad-vpn/default.nix b/pkgs/applications/networking/mullvad-vpn/default.nix index 4a5b5708aaca..e03d6fa23f5a 100644 --- a/pkgs/applications/networking/mullvad-vpn/default.nix +++ b/pkgs/applications/networking/mullvad-vpn/default.nix @@ -72,7 +72,7 @@ stdenv.mkDerivation rec { mv usr/bin/* $out/bin mv opt/Mullvad\ VPN/* $out/share/mullvad - sed -i 's|\/opt\/Mullvad.*VPN|env MULLVAD_DISABLE_UPDATE_NOTIFICATION=1 '$out'/bin|g' $out/share/applications/mullvad-vpn.desktop + sed -i 's|"\/opt\/Mullvad.*VPN|env MULLVAD_DISABLE_UPDATE_NOTIFICATION=1 "'$out'/bin|g' $out/share/applications/mullvad-vpn.desktop ln -s $out/share/mullvad/mullvad-{gui,vpn} $out/bin/ ln -s $out/share/mullvad/resources/mullvad-daemon $out/bin/mullvad-daemon diff --git a/pkgs/applications/networking/nali/default.nix b/pkgs/applications/networking/nali/default.nix new file mode 100644 index 000000000000..9e0978c80d6e --- /dev/null +++ b/pkgs/applications/networking/nali/default.nix @@ -0,0 +1,24 @@ +{ lib, fetchFromGitHub, buildGoModule }: + +buildGoModule rec { + pname = "nali"; + version = "0.3.2"; + + src = fetchFromGitHub { + owner = "zu1k"; + repo = "nali"; + rev = "v${version}"; + sha256 = "sha256-iRLoUBA+Kzv1/LZQ8HCvR79K1riYErxEWhB0OmvFy2g="; + }; + + vendorSha256 = "sha256-Kb2T+zDUuH+Rx8amYsTIhR5L3DIx5nGcDGqxHOn90NU="; + subPackages = [ "." ]; + runVend = true; + + meta = with lib; { + description = "An offline tool for querying IP geographic information and CDN provider"; + homepage = "https://github.com/zu1k/nali"; + license = licenses.mit; + maintainers = with maintainers; [ diffumist ]; + }; +} diff --git a/pkgs/applications/networking/nextcloud-client/0001-When-creating-the-autostart-entry-do-not-use-an-abso.patch b/pkgs/applications/networking/nextcloud-client/0001-When-creating-the-autostart-entry-do-not-use-an-abso.patch new file mode 100644 index 000000000000..73325791fc2b --- /dev/null +++ b/pkgs/applications/networking/nextcloud-client/0001-When-creating-the-autostart-entry-do-not-use-an-abso.patch @@ -0,0 +1,26 @@ +From bade623bb98c957d9a274df75b58296beb8ae6a7 Mon Sep 17 00:00:00 2001 +From: Marvin Dostal <maffinmaffinmaffinmaffin@gmail.com> +Date: Sun, 17 Oct 2021 21:26:51 +0200 +Subject: [PATCH] When creating the autostart entry, do not use an absolute + path + +--- + src/common/utility_unix.cpp | 2 +- + 1 file changed, 1 insertion(+), 1 deletion(-) + +diff --git a/src/common/utility_unix.cpp b/src/common/utility_unix.cpp +index 010408395..16964c64f 100644 +--- a/src/common/utility_unix.cpp ++++ b/src/common/utility_unix.cpp +@@ -83,7 +83,7 @@ void setLaunchOnStartup_private(const QString &appName, const QString &guiName, + ts << QLatin1String("[Desktop Entry]") << endl + << QLatin1String("Name=") << guiName << endl + << QLatin1String("GenericName=") << QLatin1String("File Synchronizer") << endl +- << QLatin1String("Exec=\"") << executablePath << "\" --background" << endl ++ << QLatin1String("Exec=") << "nextcloud --background" << endl + << QLatin1String("Terminal=") << "false" << endl + << QLatin1String("Icon=") << APPLICATION_ICON_NAME << endl + << QLatin1String("Categories=") << QLatin1String("Network") << endl +-- +2.31.1 + diff --git a/pkgs/applications/networking/nextcloud-client/default.nix b/pkgs/applications/networking/nextcloud-client/default.nix index d3612321c352..b7ff968f79bd 100644 --- a/pkgs/applications/networking/nextcloud-client/default.nix +++ b/pkgs/applications/networking/nextcloud-client/default.nix @@ -21,18 +21,19 @@ mkDerivation rec { pname = "nextcloud-client"; - version = "3.3.5"; + version = "3.3.6"; src = fetchFromGitHub { owner = "nextcloud"; repo = "desktop"; rev = "v${version}"; - sha256 = "sha256-kqNN9P0G/Obi/8PStmLxImQdqkhLnJoFZ7dLpqe11TI="; + sha256 = "sha256-HhFm8rIsDaV4QmvHplbj49gf1vYCZyBl8WH5bvRHT7I="; }; patches = [ # Explicitly move dbus configuration files to the store path rather than `/etc/dbus-1/services`. ./0001-Explicitly-copy-dbus-files-into-the-store-dir.patch + ./0001-When-creating-the-autostart-entry-do-not-use-an-abso.patch ]; nativeBuildInputs = [ @@ -59,6 +60,8 @@ mkDerivation rec { qtWrapperArgs = [ "--prefix LD_LIBRARY_PATH : ${lib.makeLibraryPath [ libsecret ]}" + # See also: https://bugreports.qt.io/browse/QTBUG-85967 + "--set QML_DISABLE_DISK_CACHE 1" ]; cmakeFlags = [ diff --git a/pkgs/applications/networking/nextdns/default.nix b/pkgs/applications/networking/nextdns/default.nix index 561a1c77b1ca..ae7eb49a1c66 100644 --- a/pkgs/applications/networking/nextdns/default.nix +++ b/pkgs/applications/networking/nextdns/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "nextdns"; - version = "1.37.2"; + version = "1.37.3"; src = fetchFromGitHub { owner = "nextdns"; repo = "nextdns"; rev = "v${version}"; - sha256 = "sha256-R0n/wRCaQ8WvQer3bBLUmOdIojtfjXU0bs0pTn7L0lc="; + sha256 = "sha256-BCDVn4JaRYIexI7NrRDchUl9u4AEJa+An9ItYYJDs3A="; }; vendorSha256 = "sha256-YZm+DUrH+1xdJrGjmlajbcsnqVODVbZKivVjmqZ2e48="; diff --git a/pkgs/applications/networking/p2p/qbittorrent/default.nix b/pkgs/applications/networking/p2p/qbittorrent/default.nix index 38e1b7cfceb2..f5f5b3bde762 100644 --- a/pkgs/applications/networking/p2p/qbittorrent/default.nix +++ b/pkgs/applications/networking/p2p/qbittorrent/default.nix @@ -12,13 +12,13 @@ assert trackerSearch -> (python3 != null); with lib; mkDerivation rec { pname = "qbittorrent"; - version = "4.3.8"; + version = "4.3.9"; src = fetchFromGitHub { owner = "qbittorrent"; repo = "qBittorrent"; rev = "release-${version}"; - sha256 = "sha256-on5folzKuRoVlvDOpme+aWxUKUC5PnO+N3L51qwG2gY="; + sha256 = "sha256-pFHeozx72qVjA3cmW6GK058IIAOWmyNm1UQVCQ1v5EU="; }; enableParallelBuilding = true; diff --git a/pkgs/applications/networking/p2p/torrential/default.nix b/pkgs/applications/networking/p2p/torrential/default.nix index 7290ec65ad56..1954ebe543da 100644 --- a/pkgs/applications/networking/p2p/torrential/default.nix +++ b/pkgs/applications/networking/p2p/torrential/default.nix @@ -77,5 +77,6 @@ stdenv.mkDerivation rec { maintainers = with maintainers; [ xiorcale ] ++ teams.pantheon.members; platforms = platforms.linux; license = licenses.gpl2Plus; + mainProgram = "com.github.davidmhewitt.torrential"; }; } diff --git a/pkgs/applications/networking/ping/default.nix b/pkgs/applications/networking/ping/default.nix index 82194e38eae7..8b8748d70ff3 100644 --- a/pkgs/applications/networking/ping/default.nix +++ b/pkgs/applications/networking/ping/default.nix @@ -64,5 +64,6 @@ stdenv.mkDerivation rec { maintainers = with maintainers; [ xiorcale ] ++ teams.pantheon.members; platforms = platforms.linux; license = licenses.gpl3; + mainProgram = "com.github.jeremyvaartjes.ping"; }; } diff --git a/pkgs/applications/networking/soju/default.nix b/pkgs/applications/networking/soju/default.nix index 5940b7cb19b4..f52ee1a8bb07 100644 --- a/pkgs/applications/networking/soju/default.nix +++ b/pkgs/applications/networking/soju/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "soju"; - version = "0.1.2"; + version = "0.2.2"; src = fetchFromSourcehut { owner = "~emersion"; repo = "soju"; rev = "v${version}"; - sha256 = "sha256-dauhGfwSjjRt1vl2+OPhtcme/QaRNTs43heQVnI7oRU="; + sha256 = "sha256-ssq4fED7YIJkSHhxybBIqOr5qVEHGordBxuJOmilSOY="; }; - vendorSha256 = "sha256-0JLbqqybLZ/cYyHAyNR4liAVJI2oIsHELJLWlQy0qjE="; + vendorSha256 = "sha256-60b0jhyXQg9RG0mkvUOmJOEGv96FZq/Iwv1S9c6C35c="; subPackages = [ "cmd/soju" diff --git a/pkgs/applications/networking/sync/rclone/default.nix b/pkgs/applications/networking/sync/rclone/default.nix index 8022c48a5c2e..f9fbb071b06a 100644 --- a/pkgs/applications/networking/sync/rclone/default.nix +++ b/pkgs/applications/networking/sync/rclone/default.nix @@ -5,16 +5,16 @@ buildGoModule rec { pname = "rclone"; - version = "1.56.2"; + version = "1.57.0"; src = fetchFromGitHub { owner = pname; repo = pname; rev = "v${version}"; - sha256 = "sha256-cEh1SgIOgX04ECEF0K2pvwJdugapoUzh8xbboRaMdTs="; + sha256 = "0pwbprbkx5y0c93b61k8znan4aimk7dkssapjhkhzw4c38xd4lza"; }; - vendorSha256 = "sha256-wQYVn8yGDIYlnlVTS7tiLEMwkNLF6p3OcY35nw1mvA8="; + vendorSha256 = "0353pff07lwpa1jmi095kb2izcw09z73x6nninnnpyqppwzas6ha"; subPackages = [ "." ]; diff --git a/pkgs/applications/networking/tmpmail/default.nix b/pkgs/applications/networking/tmpmail/default.nix index 433c6cf6fc24..70e144cb05ca 100644 --- a/pkgs/applications/networking/tmpmail/default.nix +++ b/pkgs/applications/networking/tmpmail/default.nix @@ -2,13 +2,13 @@ stdenvNoCC.mkDerivation rec { pname = "tmpmail"; - version = "unstable-2021-02-10"; + version = "1.1.4"; src = fetchFromGitHub { owner = "sdushantha"; repo = "tmpmail"; - rev = "150b32083d36006cf7f496e112715ae12ee87727"; - sha256 = "sha256-yQ9/UUxBTEXK5z3f+tvVRUzIGrAnrqurQ0x56Ad7RKE="; + rev = "v${version}"; + sha256 = "sha256-Rcu1qNmUZhMRvPiaWrDlzLtGksv09XBiF2GJUxXKs1Y="; }; dontConfigure = true; diff --git a/pkgs/applications/networking/zerobin/default.nix b/pkgs/applications/networking/zerobin/default.nix index 16a52d670450..56d5274751fc 100644 --- a/pkgs/applications/networking/zerobin/default.nix +++ b/pkgs/applications/networking/zerobin/default.nix @@ -40,7 +40,7 @@ python3Packages.buildPythonApplication rec { # relax version constraints of some dependencies substituteInPlace setup.cfg \ --replace "clize==4.1.1" "clize" \ - --replace "bleach==3.1.5" "bleach>=3.1.5,<4" \ + --replace "bleach==3.1.5" "bleach>=3.1.5,<5" \ --replace "bottle==0.12.18" "bottle>=0.12.18,<1" \ --replace "Paste==3.4.3" "Paste>=3.4.3,<4" ''; diff --git a/pkgs/applications/networking/znc/modules.nix b/pkgs/applications/networking/znc/modules.nix index 562372b1bb70..ddd94bff522a 100644 --- a/pkgs/applications/networking/znc/modules.nix +++ b/pkgs/applications/networking/znc/modules.nix @@ -1,25 +1,29 @@ { lib, stdenv, fetchFromGitHub, znc }: let - zncDerivation = a@{ - pname, src, module_name, - buildPhase ? "${znc}/bin/znc-buildmod ${module_name}.cpp", - installPhase ? "install -D ${module_name}.so $out/lib/znc/${module_name}.so", ... - } : stdenv.mkDerivation (a // { - inherit buildPhase; - inherit installPhase; + zncDerivation = + a@{ pname + , src + , module_name + , buildPhase ? "${znc}/bin/znc-buildmod ${module_name}.cpp" + , installPhase ? "install -D ${module_name}.so $out/lib/znc/${module_name}.so" + , ... + }: stdenv.mkDerivation (a // { + inherit buildPhase; + inherit installPhase; - buildInputs = znc.buildInputs; + buildInputs = znc.buildInputs; - meta = a.meta // { platforms = lib.platforms.unix; }; - passthru.module_name = module_name; - }); + meta = a.meta // { platforms = lib.platforms.unix; }; + passthru.module_name = module_name; + }); -in { +in +{ backlog = zncDerivation rec { pname = "znc-backlog"; - version = "git-2017-06-13"; + version = "unstable-2017-06-13"; module_name = "backlog"; src = fetchFromGitHub { @@ -39,7 +43,7 @@ in { clientbuffer = zncDerivation rec { pname = "znc-clientbuffer"; - version = "git-2020-04-24"; + version = "unstable-2020-04-24"; module_name = "clientbuffer"; src = fetchFromGitHub { @@ -59,7 +63,7 @@ in { clientaway = zncDerivation rec { pname = "znc-clientaway"; - version = "git-2017-04-28"; + version = "unstable-2017-04-28"; module_name = "clientaway"; src = fetchFromGitHub { @@ -79,7 +83,7 @@ in { fish = zncDerivation rec { pname = "znc-fish"; - version = "git-2017-06-26"; + version = "unstable-2017-06-26"; module_name = "fish"; src = fetchFromGitHub { @@ -99,7 +103,7 @@ in { ignore = zncDerivation rec { pname = "znc-ignore"; - version = "git-2017-04-28"; + version = "unstable-2017-04-28"; module_name = "ignore"; src = fetchFromGitHub { @@ -139,7 +143,7 @@ in { playback = zncDerivation rec { pname = "znc-playback"; - version = "git-2015-08-04"; + version = "unstable-2015-08-04"; module_name = "playback"; src = fetchFromGitHub { @@ -159,7 +163,7 @@ in { privmsg = zncDerivation rec { pname = "znc-privmsg"; - version = "git-2015-02-22"; + version = "unstable-2015-02-22"; module_name = "privmsg"; src = fetchFromGitHub { @@ -177,7 +181,7 @@ in { push = zncDerivation rec { pname = "znc-push"; - version = "git-2016-10-12"; + version = "unstable-2016-10-12"; module_name = "push"; src = fetchFromGitHub { diff --git a/pkgs/applications/office/agenda/default.nix b/pkgs/applications/office/agenda/default.nix index c42052e5f7d4..25f394e33f32 100644 --- a/pkgs/applications/office/agenda/default.nix +++ b/pkgs/applications/office/agenda/default.nix @@ -62,6 +62,7 @@ stdenv.mkDerivation rec { maintainers = with maintainers; [ xiorcale ] ++ teams.pantheon.members; platforms = platforms.linux; license = licenses.gpl3; + mainProgram = "com.github.dahenson.agenda"; }; } diff --git a/pkgs/applications/office/antiword/default.nix b/pkgs/applications/office/antiword/default.nix index f0aa32355450..5da7d84905bb 100644 --- a/pkgs/applications/office/antiword/default.nix +++ b/pkgs/applications/office/antiword/default.nix @@ -1,13 +1,11 @@ { lib, fetchurl, stdenv }: -let - name = "antiword-0.37"; -in -stdenv.mkDerivation { - inherit name; +stdenv.mkDerivation rec{ + pname = "antiword"; + version = "0.37"; src = fetchurl { - url = "http://www.winfield.demon.nl/linux/${name}.tar.gz"; + url = "http://www.winfield.demon.nl/linux/antiword-${version}.tar.gz"; sha256 = "1b7mi1l20jhj09kyh0bq14qzz8vdhhyf35gzwsq43mn6rc7h0b4f"; }; diff --git a/pkgs/applications/office/beancount/bean-add.nix b/pkgs/applications/office/beancount/bean-add.nix index ba3afbff9467..1d5bafbdb406 100644 --- a/pkgs/applications/office/beancount/bean-add.nix +++ b/pkgs/applications/office/beancount/bean-add.nix @@ -1,7 +1,8 @@ { lib, stdenv, fetchFromGitHub, python3Packages }: stdenv.mkDerivation { - name = "bean-add-2018-01-08"; + pname = "bean-add"; + version = "unstable-2018-01-08"; src = fetchFromGitHub { owner = "simon-v"; diff --git a/pkgs/applications/office/elementary-planner/default.nix b/pkgs/applications/office/elementary-planner/default.nix index 550316b82c55..c0cdfd75d9be 100644 --- a/pkgs/applications/office/elementary-planner/default.nix +++ b/pkgs/applications/office/elementary-planner/default.nix @@ -85,6 +85,8 @@ stdenv.mkDerivation rec { homepage = "https://planner-todo.web.app"; license = licenses.gpl3; maintainers = with maintainers; [ dtzWill ] ++ teams.pantheon.members; + platforms = platforms.linux; + mainProgram = "com.github.alainm23.planner"; }; } diff --git a/pkgs/applications/office/jabref/default.nix b/pkgs/applications/office/jabref/default.nix index b87e74c256f6..0b4ce74cdfa7 100644 --- a/pkgs/applications/office/jabref/default.nix +++ b/pkgs/applications/office/jabref/default.nix @@ -52,7 +52,7 @@ stdenv.mkDerivation rec { makeWrapper $out/lib/runtime/bin/java $out/bin/jabref \ --add-flags '-Djava.library.path=${systemLibPaths}' --add-flags "-p $out/lib/app -m org.jabref/org.jabref.JabRefLauncher" \ - --run 'export LD_LIBRARY_PATH=${systemLibPaths}:$LD_LIBRARY_PATH' + --prefix LD_LIBRARY_PATH : '${systemLibPaths}' cp -r ${desktopItem}/share/applications $out/share/ diff --git a/pkgs/applications/office/keepnote/default.nix b/pkgs/applications/office/keepnote/default.nix index 14f48da22309..1ff88d49d2b7 100644 --- a/pkgs/applications/office/keepnote/default.nix +++ b/pkgs/applications/office/keepnote/default.nix @@ -1,11 +1,12 @@ { lib, fetchurl, python2Packages }: -python2Packages.buildPythonApplication { - name = "keepnote-0.7.8"; +python2Packages.buildPythonApplication rec { + pname = "keepnote"; + version = "0.7.8"; namePrefix = ""; src = fetchurl { - url = "http://keepnote.org/download/keepnote-0.7.8.tar.gz"; + url = "http://keepnote.org/download/keepnote-${version}.tar.gz"; sha256 = "0nhkkv1n0lqf3zn17pxg5cgryv1wwlj4hfmhixwd76rcy8gs45dh"; }; diff --git a/pkgs/applications/office/notes-up/default.nix b/pkgs/applications/office/notes-up/default.nix index 4422968efbca..1aa6f7f78e93 100644 --- a/pkgs/applications/office/notes-up/default.nix +++ b/pkgs/applications/office/notes-up/default.nix @@ -68,5 +68,6 @@ stdenv.mkDerivation rec { license = licenses.gpl2Only; maintainers = with maintainers; [ ] ++ teams.pantheon.members; platforms = platforms.linux; + mainProgram = "com.github.philip-scott.notes-up"; }; } diff --git a/pkgs/applications/office/spice-up/default.nix b/pkgs/applications/office/spice-up/default.nix index b51eeb1ad954..7b72ddcf0d98 100644 --- a/pkgs/applications/office/spice-up/default.nix +++ b/pkgs/applications/office/spice-up/default.nix @@ -74,5 +74,6 @@ stdenv.mkDerivation rec { platforms = platforms.linux; # The COPYING file has GPLv3; some files have GPLv2+ and some have GPLv3+ license = licenses.gpl3Plus; + mainProgram = "com.github.philip-scott.spice-up"; }; } diff --git a/pkgs/applications/office/tagainijisho/default.nix b/pkgs/applications/office/tagainijisho/default.nix index 18126b5e2b76..7869b54a5f04 100644 --- a/pkgs/applications/office/tagainijisho/default.nix +++ b/pkgs/applications/office/tagainijisho/default.nix @@ -1,9 +1,11 @@ { lib, stdenv, fetchurl, qt4, cmake, sqlite }: -stdenv.mkDerivation { - name = "tagainijisho-1.0.3"; +stdenv.mkDerivation rec { + pname = "tagainijisho"; + version = "1.0.3"; + src = fetchurl { - url = "https://github.com/Gnurou/tagainijisho/releases/download/1.0.3/tagainijisho-1.0.3.tar.gz"; + url = "https://github.com/Gnurou/tagainijisho/releases/download/${version}/tagainijisho-${version}.tar.gz"; sha256 = "0kmg1940yiqfm4vpifyj680283ids4nsij9s750nrshwxiwwbqvg"; }; @@ -14,8 +16,10 @@ stdenv.mkDerivation { description = "A free, open-source Japanese dictionary and kanji lookup tool"; homepage = "https://www.tagaini.net/"; license = with licenses; [ - /* program */ gpl3Plus - /* data */ cc-by-sa-30 + /* program */ + gpl3Plus + /* data */ + cc-by-sa-30 ]; platforms = platforms.linux; maintainers = with maintainers; [ vbgl ]; diff --git a/pkgs/applications/office/todoman/default.nix b/pkgs/applications/office/todoman/default.nix index e01391519e49..8c7b4ee43842 100644 --- a/pkgs/applications/office/todoman/default.nix +++ b/pkgs/applications/office/todoman/default.nix @@ -4,7 +4,6 @@ , installShellFiles , jq }: - let inherit (python3.pkgs) buildPythonApplication fetchPypi setuptools-scm; in @@ -23,6 +22,7 @@ buildPythonApplication rec { installShellFiles setuptools-scm ]; + propagatedBuildInputs = with python3.pkgs; [ atomicwrites click @@ -42,25 +42,37 @@ buildPythonApplication rec { flake8-import-order freezegun hypothesis - pytest - pytest-runner - pytest-cov + pytestCheckHook glibcLocales ]; LC_ALL = "en_US.UTF-8"; + postPatch = '' + substituteInPlace setup.cfg \ + --replace " --cov=todoman --cov-report=term-missing" "" + ''; + postInstall = '' installShellCompletion --bash contrib/completion/bash/_todo substituteInPlace contrib/completion/zsh/_todo --replace "jq " "${jq}/bin/jq " installShellCompletion --zsh contrib/completion/zsh/_todo ''; - preCheck = '' - # Remove one failing test that only checks whether the command line works - rm tests/test_main.py - rm tests/test_cli.py - ''; + disabledTests = [ + # Testing of the CLI part and output + "test_color_due_dates" + "test_color_flag" + "test_default_command" + "test_main" + "test_missing_cache_dir" + "test_sorting_null_values" + "test_xdg_existant" + ]; + + pythonImportsCheck = [ + "todoman" + ]; meta = with lib; { homepage = "https://github.com/pimutils/todoman"; diff --git a/pkgs/applications/radio/csdr/default.nix b/pkgs/applications/radio/csdr/default.nix new file mode 100644 index 000000000000..9b1e75c1040f --- /dev/null +++ b/pkgs/applications/radio/csdr/default.nix @@ -0,0 +1,38 @@ +{ stdenv, lib, fetchFromGitHub +, autoreconfHook, pkg-config, fftwFloat, libsamplerate +}: + +stdenv.mkDerivation rec { + pname = "csdr"; + version = "0.17.1"; + + src = fetchFromGitHub { + owner = "jketterl"; + repo = pname; + rev = version; + sha256 = "1vip5a3xgskcwba3xi66zfr986xrsch9na7my818cm8vw345y57b"; + }; + + patchPhase = '' + substituteInPlace configure.ac \ + --replace -Wformat=0 "" + ''; + + nativeBuildInputs = [ + autoreconfHook + pkg-config + ]; + + buildInputs = [ + fftwFloat + libsamplerate + ]; + + meta = with lib; { + homepage = "https://github.com/jketterl/csdr"; + description = "A simple DSP library and command-line tool for Software Defined Radio"; + license = licenses.gpl3Only; + platforms = platforms.unix; + maintainers = with maintainers; [ astro ]; + }; +} diff --git a/pkgs/applications/radio/dsd/default.nix b/pkgs/applications/radio/dsd/default.nix index 35a3e9f44bb2..46b851ec704e 100644 --- a/pkgs/applications/radio/dsd/default.nix +++ b/pkgs/applications/radio/dsd/default.nix @@ -34,7 +34,7 @@ stdenv.mkDerivation rec { tap audio and synthesize the decoded speech. Speech synthesis requires mbelib, which is a separate package. ''; - homepage = https://github.com/szechyjs/dsd; + homepage = "https://github.com/szechyjs/dsd"; license = licenses.gpl2; platforms = platforms.unix; maintainers = with maintainers; [ andrew-d ]; diff --git a/pkgs/applications/radio/kalibrate-hackrf/default.nix b/pkgs/applications/radio/kalibrate-hackrf/default.nix index 5792031c802d..f10840e1bea9 100644 --- a/pkgs/applications/radio/kalibrate-hackrf/default.nix +++ b/pkgs/applications/radio/kalibrate-hackrf/default.nix @@ -1,7 +1,8 @@ { lib, stdenv, fetchFromGitHub, autoreconfHook, pkg-config, fftw, hackrf, libusb1 }: stdenv.mkDerivation { - name = "kalibrate-hackrf-unstable-20160827"; + pname = "kalibrate-hackrf"; + version = "unstable-2016-08-27"; # There are no tags/releases, so use the latest commit from git master. # Currently, the latest commit is from 2016-07-03. diff --git a/pkgs/applications/radio/kalibrate-rtl/default.nix b/pkgs/applications/radio/kalibrate-rtl/default.nix index 255938b11d52..4fe9ad086781 100644 --- a/pkgs/applications/radio/kalibrate-rtl/default.nix +++ b/pkgs/applications/radio/kalibrate-rtl/default.nix @@ -1,17 +1,18 @@ -{ lib, stdenv, fetchgit, autoreconfHook, pkg-config, fftw, rtl-sdr, libusb1 }: +{ lib, stdenv, fetchFromGitHub, autoreconfHook, pkg-config, fftw, rtl-sdr, libusb1 }: stdenv.mkDerivation { - name = "kalibrate-rtl-20131214"; + pname = "kalibrate-rtl"; + version = "unstable-2013-12-14"; - # There are no tags/releases, so use the latest commit from git master. - # Currently, the latest commit is from 2013-12-14. - src = fetchgit { - url = "https://github.com/steve-m/kalibrate-rtl.git"; + src = fetchFromGitHub { + owner = "steve-m"; + repo = "kalibrate-rtl"; rev = "aae11c8a8dc79692a94ccfee39ba01e8c8c05d38"; sha256 = "1spbfflkqnw9s8317ppsf7b1nnkicqsmaqsnz1zf8i49ix70i6kn"; }; nativeBuildInputs = [ autoreconfHook pkg-config ]; + buildInputs = [ fftw rtl-sdr libusb1 ]; meta = with lib; { @@ -26,6 +27,6 @@ stdenv.mkDerivation { homepage = "https://github.com/steve-m/kalibrate-rtl"; license = licenses.bsd2; platforms = platforms.linux; - maintainers = [ maintainers.bjornfor ]; + maintainers = with maintainers; [ bjornfor ]; }; } diff --git a/pkgs/applications/radio/openwebrx/default.nix b/pkgs/applications/radio/openwebrx/default.nix new file mode 100644 index 000000000000..928bc4168ebd --- /dev/null +++ b/pkgs/applications/radio/openwebrx/default.nix @@ -0,0 +1,92 @@ +{ stdenv, lib, buildPythonPackage, buildPythonApplication, fetchFromGitHub +, pkg-config, cmake, setuptools +, rtl-sdr, soapysdr-with-plugins, csdr, direwolf +}: + +let + + js8py = buildPythonPackage rec { + pname = "js8py"; + version = "0.1.1"; + + src = fetchFromGitHub { + owner = "jketterl"; + repo = pname; + rev = version; + sha256 = "1j80zclg1cl5clqd00qqa16prz7cyc32bvxqz2mh540cirygq24w"; + }; + + pythonImportsCheck = [ "js8py" "test" ]; + + meta = with lib; { + homepage = "https://github.com/jketterl/js8py"; + description = "A library to decode the output of the js8 binary of JS8Call"; + license = licenses.gpl3Only; + maintainers = with maintainers; [ astro ]; + }; + }; + + owrx_connector = stdenv.mkDerivation rec { + pname = "owrx_connector"; + version = "0.5.0"; + + src = fetchFromGitHub { + owner = "jketterl"; + repo = pname; + rev = version; + sha256 = "0gz4nf2frrkx1mpjfjpz2j919fkc99g5lxd8lhva3lgqyisvf4yj"; + }; + + nativeBuildInputs = [ + cmake + pkg-config + ]; + + buildInputs = [ + rtl-sdr + soapysdr-with-plugins + ]; + + meta = with lib; { + homepage = "https://github.com/jketterl/owrx_connector"; + description = "A set of connectors that are used by OpenWebRX to interface with SDR hardware"; + license = licenses.gpl3Only; + platforms = platforms.unix; + maintainers = with maintainers; [ astro ]; + }; + }; + +in +buildPythonApplication rec { + pname = "openwebrx"; + version = "1.1.0"; + + src = fetchFromGitHub { + owner = "jketterl"; + repo = pname; + rev = version; + sha256 = "0maxs07yx235xknvkbmhi2zds3vfkd66l6wz6kspz3jzl4c0v1f9"; + }; + + propagatedBuildInputs = [ + setuptools + csdr + js8py + soapysdr-with-plugins + owrx_connector + direwolf + ]; + + pythonImportsCheck = [ "csdr" "owrx" "test" ]; + + passthru = { + inherit js8py owrx_connector; + }; + + meta = with lib; { + homepage = "https://github.com/jketterl/openwebrx"; + description = "A simple DSP library and command-line tool for Software Defined Radio"; + license = licenses.gpl3Only; + maintainers = with maintainers; [ astro ]; + }; +} diff --git a/pkgs/applications/radio/sdrangel/default.nix b/pkgs/applications/radio/sdrangel/default.nix index 4c22d0e9325e..2ba379400382 100644 --- a/pkgs/applications/radio/sdrangel/default.nix +++ b/pkgs/applications/radio/sdrangel/default.nix @@ -33,13 +33,13 @@ mkDerivation rec { pname = "sdrangel"; - version = "6.17.1"; + version = "6.17.2"; src = fetchFromGitHub { owner = "f4exb"; repo = "sdrangel"; rev = "v${version}"; - sha256 = "sha256-VWHFrgJVyI3CtLXUiG3/4/cRTD8jSdunbrro34yLKvs="; + sha256 = "sha256-sMD2JTJJlssMdXCUHdFYjEqGknhGGuG4szfnvFFN7t4="; fetchSubmodules = false; }; diff --git a/pkgs/applications/science/astronomy/gravit/default.nix b/pkgs/applications/science/astronomy/gravit/default.nix index baf9ed7fc184..d557f32bb6da 100644 --- a/pkgs/applications/science/astronomy/gravit/default.nix +++ b/pkgs/applications/science/astronomy/gravit/default.nix @@ -1,10 +1,11 @@ { lib, stdenv, fetchurl, SDL, SDL_ttf, SDL_image, libSM, libICE, libGLU, libGL, libpng, lua5, autoconf, automake }: stdenv.mkDerivation rec { - name = "gravit-0.5.1"; + pname = "gravit"; + version = "0.5.1"; src = fetchurl { - url = "https://gravit.slowchop.com/media/downloads/${name}.tgz"; + url = "https://gravit.slowchop.com/media/downloads/gravit-${version}.tgz"; sha256 = "14vf7zj2bgrl96wsl3f1knsggc8h9624354ajzd72l46y09x5ky7"; }; diff --git a/pkgs/applications/science/biology/cmtk/default.nix b/pkgs/applications/science/biology/cmtk/default.nix index f147c0422e45..b6286d11c8cb 100644 --- a/pkgs/applications/science/biology/cmtk/default.nix +++ b/pkgs/applications/science/biology/cmtk/default.nix @@ -1,11 +1,12 @@ -{lib, stdenv, fetchurl, cmake}: +{ lib, stdenv, fetchurl, cmake }: -stdenv.mkDerivation { - name = "cmtk-3.3.1"; +stdenv.mkDerivation rec { + pname = "cmtk"; + version = "3.3.1"; src = fetchurl { name = "cmtk-source.tar.gz"; - url = "https://www.nitrc.org/frs/download.php/8198/CMTK-3.3.1-Source.tar.gz//?i_agree=1&download_now=1"; + url = "https://www.nitrc.org/frs/download.php/8198/CMTK-${version}-Source.tar.gz//?i_agree=1&download_now=1"; sha256 = "1nmsga9m7vcc4y4a6zl53ra3mwlgjwdgsq1j291awkn7zr1az6qs"; }; @@ -14,13 +15,13 @@ stdenv.mkDerivation { NIX_CFLAGS_COMPILE = lib.optionalString stdenv.cc.isClang "-Wno-error=c++11-narrowing"; meta = with lib; { - description = "Computational Morphometry Toolkit "; + description = "Computational Morphometry Toolkit "; longDescription = ''A software toolkit for computational morphometry of biomedical images, CMTK comprises a set of command line tools and a back-end general-purpose library for processing and I/O''; maintainers = with maintainers; [ tbenst ]; platforms = platforms.all; - license = licenses.gpl3; - homepage = "https://www.nitrc.org/projects/cmtk/"; + license = licenses.gpl3; + homepage = "https://www.nitrc.org/projects/cmtk/"; }; } diff --git a/pkgs/applications/science/biology/diamond/default.nix b/pkgs/applications/science/biology/diamond/default.nix index 2e11c1d8c58c..4f23f3f9a82c 100644 --- a/pkgs/applications/science/biology/diamond/default.nix +++ b/pkgs/applications/science/biology/diamond/default.nix @@ -1,10 +1,11 @@ { lib, stdenv, fetchurl, cmake, zlib }: -stdenv.mkDerivation { - name = "diamond-0.8.36"; +stdenv.mkDerivation rec { + pname = "diamond"; + version = "0.8.36"; src = fetchurl { - url = "https://github.com/bbuchfink/diamond/archive/v0.8.36.tar.gz"; + url = "https://github.com/bbuchfink/diamond/archive/v${version}.tar.gz"; sha256 = "092smzzjcg51n3x4h84k52ijpz9m40ri838j9k2i463ribc3c8rh"; }; @@ -30,7 +31,7 @@ stdenv.mkDerivation { B. Buchfink, Xie C., D. Huson, "Fast and sensitive protein alignment using DIAMOND", Nature Methods 12, 59-60 (2015). - ''; + ''; homepage = "https://github.com/bbuchfink/diamond"; license = { fullName = "University of Tuebingen, Benjamin Buchfink"; diff --git a/pkgs/applications/science/biology/ecopcr/default.nix b/pkgs/applications/science/biology/ecopcr/default.nix index 019370378605..4ed11857a30e 100644 --- a/pkgs/applications/science/biology/ecopcr/default.nix +++ b/pkgs/applications/science/biology/ecopcr/default.nix @@ -1,10 +1,11 @@ { lib, stdenv, fetchurl, gcc, zlib, python27 }: stdenv.mkDerivation rec { - name = "ecopcr-0.8.0"; + pname = "ecopcr"; + version = "0.8.0"; src = fetchurl { - url = "https://git.metabarcoding.org/obitools/ecopcr/uploads/6f37991b325c8c171df7e79e6ae8d080/${name}.tar.gz"; + url = "https://git.metabarcoding.org/obitools/ecopcr/uploads/6f37991b325c8c171df7e79e6ae8d080/ecopcr-${version}.tar.gz"; sha256 = "10c58hj25z78jh0g3zcbx4890yd2qrvaaanyx8mn9p49mmyf5pk6"; }; diff --git a/pkgs/applications/science/biology/emboss/default.nix b/pkgs/applications/science/biology/emboss/default.nix index 5cbcd46ee07c..29669d027303 100644 --- a/pkgs/applications/science/biology/emboss/default.nix +++ b/pkgs/applications/science/biology/emboss/default.nix @@ -1,9 +1,11 @@ -{lib, stdenv, fetchurl, readline, perl, libharu, libX11, libpng, libXt, zlib}: +{ lib, stdenv, fetchurl, readline, perl, libharu, libX11, libpng, libXt, zlib }: + +stdenv.mkDerivation rec { + pname = "emboss"; + version = "6.6.0"; -stdenv.mkDerivation { - name = "emboss-6.6.0"; src = fetchurl { - url = "ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-6.6.0.tar.gz"; + url = "ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-${version}.tar.gz"; sha256 = "7184a763d39ad96bb598bfd531628a34aa53e474db9e7cac4416c2a40ab10c6e"; }; @@ -16,13 +18,13 @@ stdenv.mkDerivation { ''; meta = { - description = "The European Molecular Biology Open Software Suite"; + description = "The European Molecular Biology Open Software Suite"; longDescription = ''EMBOSS is a free Open Source software analysis package specially developed for the needs of the molecular biology (e.g. EMBnet) user community, including libraries. The software automatically copes with data in a variety of formats and even allows transparent retrieval of sequence data from the web.''; - license = lib.licenses.gpl2; - homepage = "http://emboss.sourceforge.net/"; + license = lib.licenses.gpl2; + homepage = "http://emboss.sourceforge.net/"; }; } diff --git a/pkgs/applications/science/biology/iv/default.nix b/pkgs/applications/science/biology/iv/default.nix index 72cf9c86e65b..ba1b91298bb3 100644 --- a/pkgs/applications/science/biology/iv/default.nix +++ b/pkgs/applications/science/biology/iv/default.nix @@ -1,32 +1,43 @@ -{ lib, stdenv, fetchurl, neuron-version -, libX11, libXext, patchelf +{ lib +, stdenv +, fetchurl +, neuron-version +, libX11 +, libXext +, patchelf }: -stdenv.mkDerivation rec - { name = "iv-19"; - src = fetchurl - { url = "https://www.neuron.yale.edu/ftp/neuron/versions/v${neuron-version}/${name}.tar.gz"; - sha256 = "07a3g8zzay4h0bls7fh89dd0phn7s34c2g15pij6dsnwpmjg06yx"; - }; - nativeBuildInputs = [ patchelf ]; - buildInputs = [ libXext ]; - propagatedBuildInputs = [ libX11 ]; - hardeningDisable = [ "format" ]; - postInstall = '' - for dir in $out/*; do # */ - if [ -d $dir/lib ]; then - mv $dir/* $out # */ - rmdir $dir - break - fi - done - '' + lib.optionalString stdenv.isLinux '' - patchelf --add-needed ${libX11}/lib/libX11.so $out/lib/libIVhines.so - ''; - meta = with lib; - { description = "InterViews graphical library for Neuron"; - license = licenses.bsd3; - homepage = "http://www.neuron.yale.edu/neuron"; - platforms = platforms.all; - }; - } +stdenv.mkDerivation rec { + pname = "iv"; + version = "19"; + + src = fetchurl { + url = "https://www.neuron.yale.edu/ftp/neuron/versions/v${neuron-version}/iv-${version}.tar.gz"; + sha256 = "07a3g8zzay4h0bls7fh89dd0phn7s34c2g15pij6dsnwpmjg06yx"; + }; + + nativeBuildInputs = [ patchelf ]; + buildInputs = [ libXext ]; + propagatedBuildInputs = [ libX11 ]; + + hardeningDisable = [ "format" ]; + + postInstall = '' + for dir in $out/*; do # */ + if [ -d $dir/lib ]; then + mv $dir/* $out # */ + rmdir $dir + break + fi + done + '' + lib.optionalString stdenv.isLinux '' + patchelf --add-needed ${libX11}/lib/libX11.so $out/lib/libIVhines.so + ''; + + meta = with lib; { + description = "InterViews graphical library for Neuron"; + license = licenses.bsd3; + homepage = "http://www.neuron.yale.edu/neuron"; + platforms = platforms.all; + }; +} diff --git a/pkgs/applications/science/biology/obitools/obitools3.nix b/pkgs/applications/science/biology/obitools/obitools3.nix index c636942ca781..b38af2f64b54 100644 --- a/pkgs/applications/science/biology/obitools/obitools3.nix +++ b/pkgs/applications/science/biology/obitools/obitools3.nix @@ -1,10 +1,6 @@ -{ lib, fetchurl, python3Packages, cmake, python3 }: +{ stdenv, lib, fetchurl, python3Packages, cmake, python3 }: -let - pythonPackages = python3Packages; -in - -pythonPackages.buildPythonApplication rec { +python3Packages.buildPythonApplication rec { pname = "obitools3"; version = "3.0.1b11"; @@ -13,15 +9,18 @@ pythonPackages.buildPythonApplication rec { sha256 = "1x7a0nrr9agg1pfgq8i1j8r1p6c0jpyxsv196ylix1dd2iivmas1"; }; + nativeBuildInputs = [ python3Packages.cython cmake ]; + + postPatch = lib.optionalString stdenv.isAarch64 '' + substituteInPlace setup.py \ + --replace "'-msse2'," "" + ''; + preBuild = '' substituteInPlace src/CMakeLists.txt --replace \$'{PYTHONLIB}' "$out/lib/${python3.libPrefix}/site-packages"; export NIX_CFLAGS_COMPILE="-L $out/lib/${python3.libPrefix}/site-packages $NIX_CFLAGS_COMPILE" ''; - disabled = !pythonPackages.isPy3k; - - nativeBuildInputs = [ pythonPackages.cython cmake ]; - dontConfigure = true; doCheck = true; diff --git a/pkgs/applications/science/biology/picard-tools/default.nix b/pkgs/applications/science/biology/picard-tools/default.nix index 4c16413746dd..855f90a74a32 100644 --- a/pkgs/applications/science/biology/picard-tools/default.nix +++ b/pkgs/applications/science/biology/picard-tools/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "picard-tools"; - version = "2.26.3"; + version = "2.26.4"; src = fetchurl { url = "https://github.com/broadinstitute/picard/releases/download/${version}/picard.jar"; - sha256 = "sha256-H7VgD75tmAEd01Pj1o6BNT0QaXhd1pUIpAFmKM6OUlo="; + sha256 = "sha256-KVOQuqudne0SAdgFEft/lTuoDn9vcpuDtMAafztYvPo="; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/applications/science/chemistry/avogadro/default.nix b/pkgs/applications/science/chemistry/avogadro/default.nix index f5c6d79e28aa..c6339bab1228 100644 --- a/pkgs/applications/science/chemistry/avogadro/default.nix +++ b/pkgs/applications/science/chemistry/avogadro/default.nix @@ -1,10 +1,11 @@ { lib, stdenv, fetchurl, cmake, qt4, zlib, eigen, openbabel, pkg-config, libGLU, libGL, libX11, doxygen }: stdenv.mkDerivation rec { - name = "avogadro-1.1.1"; + pname = "avogadro"; + version = "1.1.1"; src = fetchurl { - url = "mirror://sourceforge/avogadro/${name}.tar.bz2"; + url = "mirror://sourceforge/avogadro/avogadro-${version}.tar.bz2"; sha256 = "050ag9p4vg7jg8hj1wqfv7lsm6ar2isxjw2vw85s49vsl7g7nvzy"; }; diff --git a/pkgs/applications/science/chemistry/octopus/default.nix b/pkgs/applications/science/chemistry/octopus/default.nix index 732e97b9b095..0434bfe120c8 100644 --- a/pkgs/applications/science/chemistry/octopus/default.nix +++ b/pkgs/applications/science/chemistry/octopus/default.nix @@ -11,13 +11,13 @@ assert (!blas.isILP64) && (!lapack.isILP64); stdenv.mkDerivation rec { pname = "octopus"; - version = "10.5"; + version = "11.2"; src = fetchFromGitLab { owner = "octopus-code"; repo = "octopus"; rev = version; - sha256 = "1bgdkmsp6pwq3b6nxxkimrdmz71wqr8qi25gdzwpcv9wmcf1q27v"; + sha256 = "sha256-leEcUSjpiP13l65K9WKN2GXTtTa8vvK/MFxR2zH6Xno="; }; nativeBuildInputs = [ diff --git a/pkgs/applications/science/chemistry/openmolcas/default.nix b/pkgs/applications/science/chemistry/openmolcas/default.nix index 3cd991796989..1c3203354873 100644 --- a/pkgs/applications/science/chemistry/openmolcas/default.nix +++ b/pkgs/applications/science/chemistry/openmolcas/default.nix @@ -5,9 +5,9 @@ } : let - version = "21.06"; + version = "21.10"; # The tag keeps moving, fix a hash instead - gitLabRev = "dd982ad4bc94dec8ac1e3e99cb6a7dd249ff71de"; + gitLabRev = "117305462bac932106e8e3a0347238b768bcb058"; python = python3.withPackages (ps : with ps; [ six pyparsing ]); @@ -19,7 +19,7 @@ in stdenv.mkDerivation { owner = "Molcas"; repo = "OpenMolcas"; rev = gitLabRev; - sha256 = "07dm73n0s7ckif561yb3s9yqxsv39a73kb9qwny4yp39wdvv52hz"; + sha256 = "sha256-GMi2dsNBog+TmpmP6fhQcp6Z5Bh2LelV//MqLnvRP5c="; }; patches = [ @@ -56,7 +56,9 @@ in stdenv.mkDerivation { "-DOPENBLASROOT=${openblas.dev}" ]; - GAROOT=globalarrays; + preConfigure = '' + export GAROOT=${globalarrays}; + ''; postConfigure = '' # The Makefile will install pymolcas during the build grrr. diff --git a/pkgs/applications/science/electronics/archimedes/default.nix b/pkgs/applications/science/electronics/archimedes/default.nix index 731f2db56af5..8bceed08e1db 100644 --- a/pkgs/applications/science/electronics/archimedes/default.nix +++ b/pkgs/applications/science/electronics/archimedes/default.nix @@ -1,10 +1,11 @@ -{lib, stdenv, fetchurl}: +{ lib, stdenv, fetchurl }: stdenv.mkDerivation rec { - name = "archimedes-2.0.1"; + pname = "archimedes"; + version = "2.0.1"; src = fetchurl { - url = "mirror://gnu/archimedes/${name}.tar.gz"; + url = "mirror://gnu/archimedes/archimedes-${version}.tar.gz"; sha256 = "0jfpnd3pns5wxcxbiw49v5sgpmm5b4v8s4q1a5292hxxk2hzmb3z"; }; diff --git a/pkgs/applications/science/electronics/hal-hardware-analyzer/default.nix b/pkgs/applications/science/electronics/hal-hardware-analyzer/default.nix index b30a18931213..f1d34062d2aa 100644 --- a/pkgs/applications/science/electronics/hal-hardware-analyzer/default.nix +++ b/pkgs/applications/science/electronics/hal-hardware-analyzer/default.nix @@ -1,6 +1,6 @@ { lib, stdenv, fetchFromGitHub, cmake, ninja, pkg-config, python3Packages , boost, rapidjson, qtbase, qtsvg, igraph, spdlog, wrapQtAppsHook -, fmt, graphviz, llvmPackages, z3 +, graphviz, llvmPackages, z3 }: stdenv.mkDerivation rec { @@ -22,7 +22,7 @@ stdenv.mkDerivation rec { ''; nativeBuildInputs = [ cmake ninja pkg-config ]; - buildInputs = [ qtbase qtsvg boost rapidjson igraph spdlog fmt graphviz wrapQtAppsHook z3 ] + buildInputs = [ qtbase qtsvg boost rapidjson igraph spdlog graphviz wrapQtAppsHook z3 ] ++ (with python3Packages; [ python pybind11 ]) ++ lib.optional stdenv.cc.isClang llvmPackages.openmp; diff --git a/pkgs/applications/science/electronics/librepcb/default.nix b/pkgs/applications/science/electronics/librepcb/default.nix index 53a67cea40bc..15b64938b256 100644 --- a/pkgs/applications/science/electronics/librepcb/default.nix +++ b/pkgs/applications/science/electronics/librepcb/default.nix @@ -1,37 +1,22 @@ { stdenv, lib, fetchFromGitHub -, qtbase, qttools, qmake, wrapQtAppsHook +, qtbase, qttools, cmake, wrapQtAppsHook }: stdenv.mkDerivation rec { pname = "librepcb"; - version = "0.1.5"; + version = "0.1.6"; src = fetchFromGitHub { owner = pname; repo = pname; rev = version; - sha256 = "0ag8h3id2c1k9ds22rfrvyhf2vjhkv82xnrdrz4n1hnlr9566vcx"; + sha256 = "0gzf3asdgdicpikb412134ybqnbbark948yrfhvba2w4i9cwbk2r"; fetchSubmodules = true; }; - nativeBuildInputs = [ qmake qttools wrapQtAppsHook ]; + nativeBuildInputs = [ cmake qttools wrapQtAppsHook ]; buildInputs = [ qtbase ]; - qmakeFlags = ["-r"]; - - # the build system tries to use 'git' at build time to find the HEAD hash. - # that's a no-no, so replace it with a quick hack. NOTE: the # adds a comment - # at the end of the line to remove the git call. - postPatch = '' - substituteInPlace ./libs/librepcb/common/common.pro \ - --replace 'GIT_COMMIT_SHA' 'GIT_COMMIT_SHA="\\\"${src.rev}\\\"" # ' - ''; - - postInstall = '' - mkdir -p $out/share/librepcb/fontobene - cp share/librepcb/fontobene/newstroke.bene $out/share/librepcb/fontobene/ - ''; - meta = with lib; { description = "A free EDA software to develop printed circuit boards"; homepage = "https://librepcb.org/"; diff --git a/pkgs/applications/science/electronics/picoscope/default.nix b/pkgs/applications/science/electronics/picoscope/default.nix new file mode 100644 index 000000000000..344d54d10a6d --- /dev/null +++ b/pkgs/applications/science/electronics/picoscope/default.nix @@ -0,0 +1,136 @@ +{ stdenv, lib, fetchurl, dpkg, makeWrapper , mono, gtk-sharp-3_0 +, glib, libusb1 , zlib, gtk3-x11, callPackage +, scopes ? [ + "picocv" + "ps2000" + "ps2000a" + "ps3000" + "ps3000a" + "ps4000" + "ps4000a" + "ps5000" + "ps5000a" + "ps6000" + "ps6000a" +] }: + +let + shared_meta = lib: + with lib; { + homepage = "https://www.picotech.com/downloads/linux"; + maintainers = with maintainers; [ expipiplus1 yorickvp wirew0rm ]; + platforms = [ "x86_64-linux" ]; + license = licenses.unfree; + }; + + libpicoipp = callPackage ({ stdenv, lib, fetchurl, autoPatchelfHook, dpkg }: + stdenv.mkDerivation rec { + pname = "libpicoipp"; + inherit (sources.libpicoipp) version; + src = fetchurl { inherit (sources.libpicoipp) url sha256; }; + nativeBuildInputs = [ dpkg autoPatchelfHook ]; + buildInputs = [ stdenv.cc.cc.lib ]; + sourceRoot = "."; + unpackCmd = "dpkg-deb -x $src ."; + installPhase = '' + runHook preInstall + mkdir -p $out/lib + cp -d opt/picoscope/lib/* $out/lib + install -Dt $out/usr/share/doc/libpicoipp usr/share/doc/libpicoipp/copyright + runHook postInstall + ''; + meta = with lib; + shared_meta lib // { + description = "library for picotech oscilloscope software"; + }; + }) { }; + + # If we don't have a platform available, put a dummy version here, so at + # least evaluation succeeds. + sources = + (lib.importJSON ./sources.json).${stdenv.system} or { picoscope.version = "unknown"; }; + + scopePkg = name: + { url, version, sha256 }: + stdenv.mkDerivation rec { + pname = "lib${name}"; + inherit version; + src = fetchurl { inherit url sha256; }; + # picoscope does a signature check, so we can't patchelf these + nativeBuildInputs = [ dpkg ]; + sourceRoot = "."; + unpackCmd = "dpkg-deb -x $src ."; + installPhase = '' + runHook preInstall + mkdir -p $out/lib + cp -d opt/picoscope/lib/* $out/lib + runHook postInstall + ''; + meta = with lib; + shared_meta lib // { + description = "library for picotech oscilloscope ${name} series"; + }; + }; + + scopePkgs = lib.mapAttrs scopePkg sources; + +in stdenv.mkDerivation rec { + pname = "picoscope"; + inherit (sources.picoscope) version; + + src = fetchurl { inherit (sources.picoscope) url sha256; }; + + nativeBuildInputs = [ dpkg makeWrapper ]; + buildInputs = [ gtk-sharp-3_0 mono glib libusb1 zlib ]; + + unpackCmd = "dpkg-deb -x $src ."; + sourceRoot = "."; + scopeLibs = lib.attrVals (map (x: "lib${x}") scopes) scopePkgs; + MONO_PATH = "${gtk-sharp-3_0}/lib/mono/gtk-sharp-3.0:" + (lib.makeLibraryPath + ([ + glib + gtk3-x11 + gtk-sharp-3_0 + libusb1 + zlib + libpicoipp + ] ++ scopeLibs)); + + installPhase = '' + runHook preInstall + mkdir -p $out/ + cp -dr usr/share $out/share + cp -dr opt/picoscope/* $out/ + makeWrapper "$(command -v mono)" $out/bin/picoscope \ + --add-flags $out/lib/PicoScope.GTK.exe \ + --prefix MONO_PATH : "$MONO_PATH" \ + --prefix LD_LIBRARY_PATH : "$MONO_PATH" + runHook postInstall + ''; + + # usage: + # services.udev.packages = [ pkgs.picoscope.rules ]; + # users.groups.pico = {}; + # users.users.you.extraGroups = [ "pico" ]; + passthru.rules = lib.writeTextDir "lib/udev/rules.d/95-pico.rules" '' + SUBSYSTEMS=="usb", ATTRS{idVendor}=="0ce9", MODE="664",GROUP="pico" + ''; + + meta = with lib; + shared_meta lib // { + description = + "Oscilloscope application that works with all PicoScope models"; + longDescription = '' + PicoScope for Linux is a powerful oscilloscope application that works + with all PicoScope models. The most important features from PicoScope + for Windows are included—scope, spectrum analyzer, advanced triggers, + automated measurements, interactive zoom, persistence modes and signal + generator control. More features are being added all the time. + + Waveform captures can be saved for off-line analysis, and shared with + PicoScope for Linux, PicoScope for macOS and PicoScope for Windows + users, or exported in text, CSV and MathWorks MATLAB 4 formats. + ''; + }; +} + diff --git a/pkgs/applications/science/electronics/picoscope/sources.json b/pkgs/applications/science/electronics/picoscope/sources.json new file mode 100644 index 000000000000..7404259b231e --- /dev/null +++ b/pkgs/applications/science/electronics/picoscope/sources.json @@ -0,0 +1,69 @@ +{ + "x86_64-linux": { + "libpicocv": { + "sha256": "c2e74c2b0679df0226993d063b38d0eda5b05ff59f29bbfa12ded5226df37024", + "url": "https://labs.picotech.com/rc/picoscope7/debian/pool/main/libp/libpicocv/libpicocv_1.1.27-1r153_amd64.deb", + "version": "1.1.27-1r153" + }, + "libpicoipp": { + "sha256": "87ae49cd5e8dda4a73a835b95ea13e4c3fc4d1c4c9d6495c9affdf6fa6b1b4aa", + "url": "https://labs.picotech.com/rc/picoscope7/debian/pool/main/libp/libpicoipp/libpicoipp_1.3.0-4r121_amd64.deb", + "version": "1.3.0-4r121" + }, + "libps2000": { + "sha256": "792e506c08cebbd617e833e1547d3e5a13a186f93cea3f84608b7ed9451fb077", + "url": "https://labs.picotech.com/rc/picoscope7/debian/pool/main/libp/libps2000/libps2000_3.0.75-3r2957_amd64.deb", + "version": "3.0.75-3r2957" + }, + "libps2000a": { + "sha256": "f31b3a8e9c6af14a59e348e4b302f12f582cdb08a47a3c04d8a6a612b4630305", + "url": "https://labs.picotech.com/rc/picoscope7/debian/pool/main/libp/libps2000a/libps2000a_2.1.75-5r2957_amd64.deb", + "version": "2.1.75-5r2957" + }, + "libps3000": { + "sha256": "27dce3c924bb0169768a4964ce567b4a18ce74079537ca1fcba61e9234691580", + "url": "https://labs.picotech.com/rc/picoscope7/debian/pool/main/libp/libps3000/libps3000_4.0.75-3r2957_amd64.deb", + "version": "4.0.75-3r2957" + }, + "libps3000a": { + "sha256": "31cf00ce136526af6e8b211a44a56b221d137de6eaec4d6fd7f31593b4245d62", + "url": "https://labs.picotech.com/rc/picoscope7/debian/pool/main/libp/libps3000a/libps3000a_2.1.75-6r2957_amd64.deb", + "version": "2.1.75-6r2957" + }, + "libps4000": { + "sha256": "c976f09647f1fd2c980aafd1efe7f557bfc7c283fb9c135725c38dd59cc297e9", + "url": "https://labs.picotech.com/rc/picoscope7/debian/pool/main/libp/libps4000/libps4000_2.1.75-2r2957_amd64.deb", + "version": "2.1.75-2r2957" + }, + "libps4000a": { + "sha256": "727f24fa74759385902d41d52a26a4636b3e3f08a8743901d15cc49622207b97", + "url": "https://labs.picotech.com/rc/picoscope7/debian/pool/main/libp/libps4000a/libps4000a_2.1.75-2r2957_amd64.deb", + "version": "2.1.75-2r2957" + }, + "libps5000": { + "sha256": "3237c1dfdb384079b7039d2b4a8e0b0126e804830b29d60e89ae018182667edb", + "url": "https://labs.picotech.com/rc/picoscope7/debian/pool/main/libp/libps5000/libps5000_2.1.75-3r2957_amd64.deb", + "version": "2.1.75-3r2957" + }, + "libps5000a": { + "sha256": "27947f8461a16cf59d64cd23d7a78ddd27826e38dfe9fca3902e3b553591fb19", + "url": "https://labs.picotech.com/rc/picoscope7/debian/pool/main/libp/libps5000a/libps5000a_2.1.75-5r2957_amd64.deb", + "version": "2.1.75-5r2957" + }, + "libps6000": { + "sha256": "d65e923db969e306fb9f3f3892229a297d6187574d901dde44375270cc1e1404", + "url": "https://labs.picotech.com/rc/picoscope7/debian/pool/main/libp/libps6000/libps6000_2.1.75-6r2957_amd64.deb", + "version": "2.1.75-6r2957" + }, + "libps6000a": { + "sha256": "eff8644ad44f9cc1cf9052e27786a1480a4ab599766c1c01e370fef40a76b224", + "url": "https://labs.picotech.com/rc/picoscope7/debian/pool/main/libp/libps6000a/libps6000a_1.0.75-0r2957_amd64.deb", + "version": "1.0.75-0r2957" + }, + "picoscope": { + "sha256": "3d2a0e360c8143fc03c29b394c16bfc2387164e33099a46b6905af992cfab440", + "url": "https://labs.picotech.com/rc/picoscope7/debian/pool/main/p/picoscope/picoscope_7.0.83-1r9320_amd64.deb", + "version": "7.0.83-1r9320" + } + } +} diff --git a/pkgs/applications/science/electronics/picoscope/update.py b/pkgs/applications/science/electronics/picoscope/update.py new file mode 100755 index 000000000000..ecbd2292030d --- /dev/null +++ b/pkgs/applications/science/electronics/picoscope/update.py @@ -0,0 +1,44 @@ +#!/usr/bin/env nix-shell +#!nix-shell --pure -i python3 -p "python3.withPackages (ps: with ps; [ requests ])" +import json +import os +import requests +import sys + +def parse_packages(text): + res = [] + for package in resp.text.split("\n\n"): + if not package: continue + pkg = {} + for field in package.split("\n"): + if field.startswith(" "): # multiline string + pkg[k] += "\n" + field[1:] + else: + [k, v] = field.split(": ", 1) + pkg[k] = v + res.append(pkg) + return res + +def generate_sources(packages): + sources_spec = {} + for pkg in pkgs: + sources_spec[pkg['Package']] = { + "url": "https://labs.picotech.com/rc/picoscope7/debian/" + pkg["Filename"], + "sha256": pkg["SHA256"], + "version": pkg["Version"] + } + return sources_spec + +out = {} +for nix_system, release in {"x86_64-linux": "amd64"}.items(): + resp = requests.get("https://labs.picotech.com/rc/picoscope7/debian//dists/picoscope/main/binary-"+release+"/Packages") + if resp.status_code != 200: + print("error: could not fetch data for release {} (code {})".format(release, resp.code), file=sys.stderr) + sys.exit(1) + pkgs = parse_packages(resp.text) + out[nix_system] = generate_sources(pkgs) + +with open(os.path.dirname(__file__) + "/sources.json", "w") as f: + json.dump(out, f, indent=2, sort_keys=True) + f.write('\n') + diff --git a/pkgs/applications/science/electronics/qfsm/default.nix b/pkgs/applications/science/electronics/qfsm/default.nix index de79abc3e511..b2e3704cba70 100644 --- a/pkgs/applications/science/electronics/qfsm/default.nix +++ b/pkgs/applications/science/electronics/qfsm/default.nix @@ -1,10 +1,11 @@ { lib, stdenv, fetchurl, qt4, cmake, graphviz, pkg-config }: stdenv.mkDerivation rec { - name = "qfsm-0.54.0"; + pname = "qfsm"; + version = "0.54.0"; src = fetchurl { - url = "mirror://sourceforge/qfsm/${name}-Source.tar.bz2"; + url = "mirror://sourceforge/qfsm/qfsm-${version}-Source.tar.bz2"; sha256 = "0rl7bc5cr29ng67yij4akciyid9z7npal812ys4c3m229vjvflrb"; }; diff --git a/pkgs/applications/science/electronics/tkgate/1.x.nix b/pkgs/applications/science/electronics/tkgate/1.x.nix index 6a3999585534..f8741cd8d180 100644 --- a/pkgs/applications/science/electronics/tkgate/1.x.nix +++ b/pkgs/applications/science/electronics/tkgate/1.x.nix @@ -5,10 +5,11 @@ let libiconvLib = lib.optionalString stdenv.isLinux "${glibc.out}/lib"; in stdenv.mkDerivation rec { - name = "tkgate-1.8.7"; + pname = "tkgate"; + version = "1.8.7"; src = fetchurl { - url = "http://www.tkgate.org/downloads/${name}.tgz"; + url = "http://www.tkgate.org/downloads/tkgate-${version}.tgz"; sha256 = "1pqywkidfpdbj18i03h97f4cimld4fb3mqfy8jjsxs12kihm18fs"; }; diff --git a/pkgs/applications/science/geometry/tetgen/1.4.nix b/pkgs/applications/science/geometry/tetgen/1.4.nix index 245d4c12bfe0..684f5913f79f 100644 --- a/pkgs/applications/science/geometry/tetgen/1.4.nix +++ b/pkgs/applications/science/geometry/tetgen/1.4.nix @@ -1,10 +1,11 @@ -{lib, stdenv, fetchurl}: +{ lib, stdenv, fetchurl }: stdenv.mkDerivation rec { - name = "tetgen-1.4.3"; + pname = "tetgen"; + version = "1.4.3"; src = fetchurl { - url = "${meta.homepage}/files/tetgen1.4.3.tar.gz"; + url = "${meta.homepage}/files/tetgen${version}.tar.gz"; sha256 = "0d70vjqdapmy1ghlsxjlvl5z9yp310zw697bapc4zxmp0sxi29wm"; }; diff --git a/pkgs/applications/science/logic/aspino/default.nix b/pkgs/applications/science/logic/aspino/default.nix index f9cc97893da8..fc16423b671e 100644 --- a/pkgs/applications/science/logic/aspino/default.nix +++ b/pkgs/applications/science/logic/aspino/default.nix @@ -8,7 +8,8 @@ let in stdenv.mkDerivation { - name = "aspino-unstable-2017-03-09"; + pname = "aspino"; + version = "unstable-2017-03-09"; src = fetchFromGitHub { owner = "alviano"; diff --git a/pkgs/applications/science/logic/boolector/default.nix b/pkgs/applications/science/logic/boolector/default.nix index 7d90dca46f59..74927dd434d0 100644 --- a/pkgs/applications/science/logic/boolector/default.nix +++ b/pkgs/applications/science/logic/boolector/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchFromGitHub, lib, python3 +{ stdenv, fetchFromGitHub, lib, python3, fetchpatch , cmake, lingeling, btor2tools, gtest, gmp }: @@ -13,6 +13,15 @@ stdenv.mkDerivation rec { sha256 = "1smcy6yp8wvnw2brgnv5bf40v87k4v4fbdbrhi7987vja632k50z"; }; + patches = [ + # present in master - remove after 3.2.2 + (fetchpatch { + name = "fix-parser-getc-char-casts.patch"; + url = "https://github.com/Boolector/boolector/commit/cc3a70918538c1e71ea5e7273fa1ac098da37c1b.patch"; + sha256 = "0pjvagcy74vxa2q75zbshcz8j7rvhl98549xfcf5y8yyxf5h8hyq"; + }) + ]; + postPatch = '' sed s@REPLACEME@file://${gtest.src}@ ${./cmake-gtest.patch} | patch -p1 ''; diff --git a/pkgs/applications/science/logic/elan/default.nix b/pkgs/applications/science/logic/elan/default.nix index fb636da0ec41..a5709b69fbb8 100644 --- a/pkgs/applications/science/logic/elan/default.nix +++ b/pkgs/applications/science/logic/elan/default.nix @@ -7,16 +7,16 @@ in rustPlatform.buildRustPackage rec { pname = "elan"; - version = "1.3.0"; + version = "1.3.1"; src = fetchFromGitHub { owner = "leanprover"; repo = "elan"; rev = "v${version}"; - sha256 = "0gql015zb3y95v68kmv2dscz7fnh89x1shrqxxqk5a0jhd2z93n1"; + sha256 = "sha256-QNVzpnT77+9PXhq4Yz0q3o+GiQTVy7dOrg2yBTscoek="; }; - cargoSha256 = "sha256-rL++3RstCSBMYFj9BeOo6gepfId/sje4ES3Wm+Mb4cQ="; + cargoSha256 = "sha256-G70QopoMqFrkOnuui3+3cEHYvmnf0meX1Ecv4q8FCpM="; nativeBuildInputs = [ pkg-config makeWrapper ]; diff --git a/pkgs/applications/science/logic/gappa/default.nix b/pkgs/applications/science/logic/gappa/default.nix index be1d6f253bc5..af6673caa54f 100644 --- a/pkgs/applications/science/logic/gappa/default.nix +++ b/pkgs/applications/science/logic/gappa/default.nix @@ -1,10 +1,11 @@ { lib, stdenv, fetchurl, gmp, mpfr, boost }: -stdenv.mkDerivation { - name = "gappa-1.4.0"; +stdenv.mkDerivation rec { + pname = "gappa"; + version = "1.4.0"; src = fetchurl { - url = "https://gforge.inria.fr/frs/download.php/file/38436/gappa-1.4.0.tar.gz"; + url = "https://gforge.inria.fr/frs/download.php/file/38436/gappa-${version}.tar.gz"; sha256 = "12x42z901pr05ldmparqdi8sq9s7fxbavhzk2dbq3l6hy247dwbb"; }; diff --git a/pkgs/applications/science/logic/hol_light/default.nix b/pkgs/applications/science/logic/hol_light/default.nix index 24faa98f777b..e66fe992e189 100644 --- a/pkgs/applications/science/logic/hol_light/default.nix +++ b/pkgs/applications/science/logic/hol_light/default.nix @@ -3,11 +3,11 @@ let load_num = if num == null then "" else - '' - -I ${num}/lib/ocaml/${ocaml.version}/site-lib/num \ - -I ${num}/lib/ocaml/${ocaml.version}/site-lib/top-num \ - -I ${num}/lib/ocaml/${ocaml.version}/site-lib/stublibs \ - ''; + '' + -I ${num}/lib/ocaml/${ocaml.version}/site-lib/num \ + -I ${num}/lib/ocaml/${ocaml.version}/site-lib/top-num \ + -I ${num}/lib/ocaml/${ocaml.version}/site-lib/stublibs \ + ''; start_script = '' @@ -21,19 +21,22 @@ let in stdenv.mkDerivation { - name = "hol_light-2019-10-06"; + pname = "hol_light"; + version = "unstable-2019-10-06"; src = fetchFromGitHub { - owner = "jrh13"; - repo = "hol-light"; - rev = "5c91b2ded8a66db571824ecfc18b4536c103b23e"; + owner = "jrh13"; + repo = "hol-light"; + rev = "5c91b2ded8a66db571824ecfc18b4536c103b23e"; sha256 = "0sxsk8z08ba0q5aixdyczcx5l29lb51ba4ip3d2fry7y604kjsx6"; }; - patches = [(fetchpatch { - url = "https://salsa.debian.org/ocaml-team/hol-light/-/raw/master/debian/patches/0004-Fix-compilation-with-camlp5-7.11.patch"; - sha256 = "180qmxbrk3vb1ix7j77hcs8vsar91rs11s5mm8ir5352rz7ylicr"; - })]; + patches = [ + (fetchpatch { + url = "https://salsa.debian.org/ocaml-team/hol-light/-/raw/master/debian/patches/0004-Fix-compilation-with-camlp5-7.11.patch"; + sha256 = "180qmxbrk3vb1ix7j77hcs8vsar91rs11s5mm8ir5352rz7ylicr"; + }) + ]; buildInputs = [ ocaml camlp5 ]; propagatedBuildInputs = [ num ]; @@ -47,9 +50,9 @@ stdenv.mkDerivation { meta = with lib; { description = "Interactive theorem prover based on Higher-Order Logic"; - homepage = "http://www.cl.cam.ac.uk/~jrh13/hol-light/"; - license = licenses.bsd2; - platforms = platforms.unix; + homepage = "http://www.cl.cam.ac.uk/~jrh13/hol-light/"; + license = licenses.bsd2; + platforms = platforms.unix; maintainers = with maintainers; [ thoughtpolice maggesi vbgl ]; }; } diff --git a/pkgs/applications/science/logic/lingeling/default.nix b/pkgs/applications/science/logic/lingeling/default.nix index 08bd0e4d6375..1abf38b49cf8 100644 --- a/pkgs/applications/science/logic/lingeling/default.nix +++ b/pkgs/applications/science/logic/lingeling/default.nix @@ -4,15 +4,14 @@ stdenv.mkDerivation { pname = "lingeling"; - # This is the version used in satcomp2018, which was - # relicensed, and also known as version 'bcj' - version = "pre1_03b4860d"; + # This is the version used in satcomp2020 + version = "pre1_708beb26"; src = fetchFromGitHub { owner = "arminbiere"; repo = "lingeling"; - rev = "03b4860d14016f42213ea271014f2f13d181f504"; - sha256 = "1lw1yfy219p7rrk88sbq4zl24b70040zapbjdrpv5a6i0jsblksx"; + rev = "708beb26a7d5b5d5e7abd88d6f552fb1946b07c1"; + sha256 = "1lb2g37nd8qq5hw5g6l691nx5095336yb2zlbaw43mg56hkj8357"; }; configurePhase = '' diff --git a/pkgs/applications/science/logic/logisim-evolution/default.nix b/pkgs/applications/science/logic/logisim-evolution/default.nix index 10266abffea1..cf7470b5475b 100644 --- a/pkgs/applications/science/logic/logisim-evolution/default.nix +++ b/pkgs/applications/science/logic/logisim-evolution/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "logisim-evolution"; - version = "3.5.0"; + version = "3.7.1"; src = fetchurl { url = "https://github.com/logisim-evolution/logisim-evolution/releases/download/v${version}/logisim-evolution-${version}-all.jar"; - sha256 = "1r6im4gmjbnckx8jig6bxi5lxv06lwdnpxkyfalsfmw4nybd5arw"; + sha256 = "04q9bzhnzpi8cgv3ly4ii88qvmlw9n09c4p1qmg8dhxqkskdqj6h"; }; dontUnpack = true; @@ -30,8 +30,11 @@ stdenv.mkDerivation rec { mkdir -p $out/bin makeWrapper ${jre}/bin/java $out/bin/logisim-evolution --add-flags "-jar $src" - unzip $src resources/logisim/img/logisim-icon.svg - install -D resources/logisim/img/logisim-icon.svg $out/share/pixmaps/logisim-evolution.svg + # Create icons + unzip $src "resources/logisim/img/*" + for size in 16 32 48 128 256; do + install -D "./resources/logisim/img/logisim-icon-$size.png" "$out/share/icons/hicolor/''${size}x''${size}/apps/logisim-evolution.png" + done runHook postInstall ''; diff --git a/pkgs/applications/science/logic/open-wbo/default.nix b/pkgs/applications/science/logic/open-wbo/default.nix index 77db8ae3384d..193f603656dc 100644 --- a/pkgs/applications/science/logic/open-wbo/default.nix +++ b/pkgs/applications/science/logic/open-wbo/default.nix @@ -1,7 +1,8 @@ { lib, stdenv, fetchFromGitHub, zlib, gmp }: stdenv.mkDerivation { - name = "open-wbo-2.0"; + pname = "open-wbo"; + version = "2.0"; src = fetchFromGitHub { owner = "sat-group"; diff --git a/pkgs/applications/science/logic/opensmt/default.nix b/pkgs/applications/science/logic/opensmt/default.nix index 2ef494cca266..e701fb2711f0 100644 --- a/pkgs/applications/science/logic/opensmt/default.nix +++ b/pkgs/applications/science/logic/opensmt/default.nix @@ -6,13 +6,13 @@ stdenv.mkDerivation rec { pname = "opensmt"; - version = "2.1.1"; + version = "2.2.0"; src = fetchFromGitHub { owner = "usi-verification-and-security"; repo = "opensmt"; rev = "v${version}"; - sha256 = "sha256-StnEvkSSKDHGYXIQsDUu9T9Ztl+RtDTP47JvnRyH0bE="; + sha256 = "sha256-6VkBGDzqG3mplpvFh5DIR0I1I2/J0Pi7xYk/yVn04Kg="; }; nativeBuildInputs = [ cmake bison flex ]; diff --git a/pkgs/applications/science/logic/prover9/default.nix b/pkgs/applications/science/logic/prover9/default.nix index 7fedca72b698..aa01469bfbb8 100644 --- a/pkgs/applications/science/logic/prover9/default.nix +++ b/pkgs/applications/science/logic/prover9/default.nix @@ -1,7 +1,8 @@ -{lib, stdenv, fetchurl}: +{ lib, stdenv, fetchurl }: stdenv.mkDerivation { - name = "prover9-2009-11a"; + pname = "prover9"; + version = "2009-11a"; src = fetchurl { url = "https://www.cs.unm.edu/~mccune/mace4/download/LADR-2009-11A.tar.gz"; @@ -10,7 +11,7 @@ stdenv.mkDerivation { hardeningDisable = [ "format" ]; - patchPhase = '' + postPatch = '' RM=$(type -tp rm) MV=$(type -tp mv) CP=$(type -tp cp) @@ -30,16 +31,16 @@ stdenv.mkDerivation { cp bin/* $out/bin ''; - meta = { + meta = with lib; { homepage = "https://www.cs.unm.edu/~mccune/mace4/"; - license = "GPL"; + license = licenses.gpl1; description = "Automated theorem prover for first-order and equational logic"; longDescription = '' Prover9 is a resolution/paramodulation automated theorem prover for first-order and equational logic. Prover9 is a successor of the Otter Prover. This is the LADR command-line version. ''; - platforms = lib.platforms.linux; - maintainers = []; + platforms = platforms.linux; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/applications/science/logic/proverif/default.nix b/pkgs/applications/science/logic/proverif/default.nix index ba46d87581e0..fbc9eb2d8a15 100644 --- a/pkgs/applications/science/logic/proverif/default.nix +++ b/pkgs/applications/science/logic/proverif/default.nix @@ -2,28 +2,28 @@ stdenv.mkDerivation rec { pname = "proverif"; - version = "2.02pl1"; + version = "2.03"; src = fetchurl { - url = "http://prosecco.gforge.inria.fr/personal/bblanche/proverif/proverif${version}.tar.gz"; - sha256 = "1jmzfpx0hdgfmkq0jp6i3k5av9xxgndjaj743wfy37svn0ga4jjx"; + url = "https://bblanche.gitlabpages.inria.fr/proverif/proverif${version}.tar.gz"; + sha256 = "sha256:1q5mp9il09jylimcaqczb3kh34gb5px88js127gxv0jj5b4bqfc7"; }; - buildInputs = with ocamlPackages; [ ocaml findlib lablgtk ]; + buildInputs = with ocamlPackages; [ ocaml findlib ]; - buildPhase = "./build"; + buildPhase = "./build -nointeract"; installPhase = '' - mkdir -p $out/bin - cp ./proverif $out/bin - cp ./proveriftotex $out/bin + runHook preInstall + install -D -t $out/bin proverif proveriftotex install -D -t $out/share/emacs/site-lisp/ emacs/proverif.el + runHook postInstall ''; meta = { - description = "Cryptographic protocol verifier in the Dolev-Yao model"; - homepage = "https://prosecco.gforge.inria.fr/personal/bblanche/proverif/"; + description = "Cryptographic protocol verifier in the formal model"; + homepage = "https://bblanche.gitlabpages.inria.fr/proverif/"; license = lib.licenses.gpl2; platforms = lib.platforms.unix; - maintainers = [ lib.maintainers.thoughtpolice ]; + maintainers = with lib.maintainers; [ thoughtpolice vbgl ]; }; } diff --git a/pkgs/applications/science/logic/redprl/default.nix b/pkgs/applications/science/logic/redprl/default.nix index 43a2ec7e97e2..656f3f1b653e 100644 --- a/pkgs/applications/science/logic/redprl/default.nix +++ b/pkgs/applications/science/logic/redprl/default.nix @@ -1,28 +1,37 @@ -{ lib, stdenv, fetchgit, mlton }: +{ lib, stdenv, fetchFromGitHub, mlton }: + stdenv.mkDerivation { - name = "redprl-2017-03-28"; - src = fetchgit { - url = "https://github.com/RedPRL/sml-redprl.git"; - rev = "bdf027de732e4a8d10f9f954389dfff0c822f18b"; - sha256 = "0cihwnd78d3ksxp6mppifm7xpi3fsii5mixvicajy87ggw8z305c"; + pname = "redprl"; + version = "unstable-2019-11-04"; + + src = fetchFromGitHub { + owner = "RedPRL"; + repo = "sml-redprl"; + rev = "c72190de76f7ed1cfbe1d2046c96e99ac5022b0c"; fetchSubmodules = true; + sha256 = "sha256-xrQT5o0bsIN+mCYUOz9iY4+j3HGROb1I6R2ADcLy8n4="; }; + buildInputs = [ mlton ]; - patchPhase = '' + + postPatch = '' patchShebangs ./script/ ''; + buildPhase = '' ./script/mlton.sh ''; + installPhase = '' mkdir -p $out/bin mv ./bin/redprl $out/bin ''; - meta = { + + meta = with lib; { description = "A proof assistant for Nominal Computational Type Theory"; homepage = "http://www.redprl.org/"; - license = lib.licenses.mit; - maintainers = [ lib.maintainers.acowley ]; - platforms = lib.platforms.unix; + license = licenses.mit; + maintainers = with maintainers; [ acowley ]; + platforms = platforms.unix; }; } diff --git a/pkgs/applications/science/logic/sad/default.nix b/pkgs/applications/science/logic/sad/default.nix index fe0ca1b3017b..a509d70ed462 100644 --- a/pkgs/applications/science/logic/sad/default.nix +++ b/pkgs/applications/science/logic/sad/default.nix @@ -1,9 +1,10 @@ { lib, stdenv, fetchurl, haskell, spass }: -stdenv.mkDerivation { - name = "system-for-automated-deduction-2.3.25"; +stdenv.mkDerivation rec { + pname = "system-for-automated-deduction"; + version = "2.3.25"; src = fetchurl { - url = "http://nevidal.org/download/sad-2.3-25.tar.gz"; + url = "http://nevidal.org/download/sad-${version}.tar.gz"; sha256 = "10jd93xgarik7xwys5lq7fx4vqp7c0yg1gfin9cqfch1k1v8ap4b"; }; buildInputs = [ haskell.compiler.ghc844 spass ]; @@ -15,7 +16,7 @@ stdenv.mkDerivation { ]; postPatch = '' substituteInPlace Alice/Main.hs --replace init.opt $out/init.opt - ''; + ''; installPhase = '' mkdir -p $out/{bin,provers} install alice $out/bin @@ -23,18 +24,18 @@ stdenv.mkDerivation { substituteAll provers/provers.dat $out/provers/provers.dat substituteAll init.opt $out/init.opt cp -r examples $out - ''; + ''; inherit spass; meta = { description = "A program for automated proving of mathematical texts"; longDescription = '' The system for automated deduction is intended for automated processing of formal mathematical texts written in a special language called ForTheL (FORmal THEory Language) or in a traditional first-order language - ''; + ''; license = lib.licenses.gpl3Plus; maintainers = [ lib.maintainers.schmitthenner ]; homepage = "http://nevidal.org/sad.en.html"; platforms = lib.platforms.linux; - broken = true; # ghc-8.4.4 is gone from Nixpkgs + broken = true; # ghc-8.4.4 is gone from Nixpkgs }; } diff --git a/pkgs/applications/science/machine-learning/shogun/default.nix b/pkgs/applications/science/machine-learning/shogun/default.nix index a7010966c26d..911d0043ed26 100644 --- a/pkgs/applications/science/machine-learning/shogun/default.nix +++ b/pkgs/applications/science/machine-learning/shogun/default.nix @@ -1,13 +1,38 @@ -{ stdenv, lib, fetchFromGitHub, fetchpatch, fetchurl, cmake, ctags, swig -# data, compression -, bzip2, curl, hdf5, json_c, xz, lzo, protobuf, snappy -# maths -, blas, lapack, eigen, nlopt, lp_solve, colpack, glpk -# libraries -, libarchive, libxml2 -# extra support -, pythonSupport ? true, pythonPackages ? null -, opencvSupport ? false, opencv ? null +{ lib +, stdenv +, fetchFromGitHub +, fetchpatch +, fetchurl + # build +, cmake +, ctags +, pythonPackages +, swig + # math +, eigen +, blas +, lapack +, glpk + # data +, protobuf +, json_c +, libxml2 +, hdf5 +, curl + # compression +, libarchive +, bzip2 +, xz +, snappy +, lzo + # more math +, nlopt +, lp_solve +, colpack + # extra support +, pythonSupport ? true +, opencvSupport ? false +, opencv ? null , withSvmLight ? false }: @@ -19,8 +44,10 @@ assert (!blas.isILP64) && (!lapack.isILP64); let pname = "shogun"; version = "6.1.4"; + rxcppVersion = "4.0.0"; gtestVersion = "1.8.0"; + srcs = { toolbox = fetchFromGitHub { owner = pname + "-toolbox"; @@ -29,7 +56,8 @@ let sha256 = "05s9dclmk7x5d7wnnj4qr6r6c827m72a44gizcv09lxr28pr9inz"; fetchSubmodules = true; }; - # we need the packed archive + + # The CMake external projects expect the packed archives rxcpp = fetchurl { url = "https://github.com/Reactive-Extensions/RxCpp/archive/v${rxcppVersion}.tar.gz"; sha256 = "0y2isr8dy2n1yjr9c5570kpc9lvdlch6jv0jvw000amwn5d3krsh"; @@ -42,54 +70,90 @@ let in stdenv.mkDerivation rec { - inherit pname version; + outputs = [ "out" "dev" "doc" ]; + src = srcs.toolbox; - postUnpack = '' - mkdir -p $sourceRoot/third_party/{rxcpp,gtest} - ln -s ${srcs.rxcpp} $sourceRoot/third_party/rxcpp/v${rxcppVersion}.tar.gz - ln -s ${srcs.gtest} $sourceRoot/third_party/gtest/release-${gtestVersion}.tar.gz - ''; - - # broken - doCheck = false; - patches = [ + # Fix compile errors with json-c + # https://github.com/shogun-toolbox/shogun/pull/4104 (fetchpatch { - url = "https://github.com/awild82/shogun/commit/365ce4c4c700736d2eec8ba6c975327a5ac2cd9b.patch"; + url = "https://github.com/shogun-toolbox/shogun/commit/365ce4c4c700736d2eec8ba6c975327a5ac2cd9b.patch"; sha256 = "158hqv4xzw648pmjbwrhxjp7qcppqa7kvriif87gn3zdn711c49s"; }) + + # Fix compile errors with GCC 9+ + # https://github.com/shogun-toolbox/shogun/pull/4811 + (fetchpatch { + url = "https://github.com/shogun-toolbox/shogun/commit/c8b670be4790e0f06804b048a6f3d77c17c3ee95.patch"; + sha256 = "sha256-MxsR3Y2noFQevfqWK3nmX5iK4OVWeKBl5tfeDNgjcXk="; + }) + (fetchpatch { + url = "https://github.com/shogun-toolbox/shogun/commit/5aceefd9fb0e2132c354b9a0c0ceb9160cc9b2f7.patch"; + sha256 = "sha256-AgJJKQA8vc5oKaTQDqMdwBR4hT4sn9+uW0jLe7GteJw="; + }) + + # Fix compile errors with Eigen 3.4 + ./eigen-3.4.patch + ] ++ lib.optional (!withSvmLight) ./svmlight-scrubber.patch; - CCACHE_DISABLE="1"; - CCACHE_DIR=".ccache"; + nativeBuildInputs = [ cmake swig ctags ] + ++ (with pythonPackages; [ python jinja2 ply ]); - nativeBuildInputs = [ cmake ]; - buildInputs = with lib; [ - blas lapack bzip2 colpack curl ctags eigen hdf5 json_c lp_solve xz lzo - protobuf nlopt snappy swig (libarchive.dev) libxml2 lapack glpk - ] - ++ optionals (pythonSupport) (with pythonPackages; [ python ply numpy ]) - ++ optional (opencvSupport) opencv; + buildInputs = [ + eigen + blas + lapack + glpk + protobuf + json_c + libxml2 + hdf5 + curl + libarchive + bzip2 + xz + snappy + lzo + nlopt + lp_solve + colpack + ] ++ lib.optionals pythonSupport (with pythonPackages; [ python numpy ]) + ++ lib.optional opencvSupport opencv; - NIX_CFLAGS_COMPILE="-faligned-new"; - - cmakeFlags = - let - onOff = b: if b then "ON" else "OFF"; - flag = n: b: "-D"+n+"="+onOff b; - in - with lib; [ - (flag "ENABLE_TESTING" doCheck) - (flag "BUILD_META_EXAMPLES" doCheck) - (flag "CMAKE_VERBOSE_MAKEFILE:BOOL" doCheck) - (flag "PythonModular" pythonSupport) - (flag "OpenCV" opencvSupport) - (flag "USE_SVMLIGHT" withSvmLight) + cmakeFlags = let + enableIf = cond: if cond then "ON" else "OFF"; + in [ + "-DBUILD_META_EXAMPLES=ON" + "-DCMAKE_DISABLE_FIND_PACKAGE_ARPACK=ON" + "-DCMAKE_DISABLE_FIND_PACKAGE_ARPREC=ON" + "-DCMAKE_DISABLE_FIND_PACKAGE_CPLEX=ON" + "-DCMAKE_DISABLE_FIND_PACKAGE_Mosek=ON" + "-DCMAKE_DISABLE_FIND_PACKAGE_TFLogger=ON" + "-DCMAKE_DISABLE_FIND_PACKAGE_ViennaCL=ON" + "-DCMAKE_SKIP_BUILD_RPATH=OFF" + "-DCMAKE_CTEST_ARGUMENTS='--exclude-regex;TrainedModelSerialization'" # Sporadic segfault + "-DENABLE_TESTING=${enableIf doCheck}" + "-DDISABLE_META_INTEGRATION_TESTS=ON" + "-DTRAVIS_DISABLE_META_CPP=ON" + "-DPythonModular=${enableIf pythonSupport}" + "-DOpenCV=${enableIf opencvSupport}" + "-DUSE_SVMLIGHT=${enableIf withSvmLight}" ]; + CXXFLAGS = "-faligned-new"; + + doCheck = true; + + postUnpack = '' + mkdir -p $sourceRoot/third_party/{rxcpp,GoogleMock} + ln -s ${srcs.rxcpp} $sourceRoot/third_party/rxcpp/v${rxcppVersion}.tar.gz + ln -s ${srcs.gtest} $sourceRoot/third_party/GoogleMock/release-${gtestVersion}.tar.gz + ''; + postPatch = '' # Fix preprocessing SVMlight code sed -i \ @@ -106,10 +170,17 @@ stdenv.mkDerivation rec { ./scripts/light-scrubber.sh ''; + postInstall = '' + mkdir -p $doc/share/doc/shogun/examples + mv $out/share/shogun/examples/cpp $doc/share/doc/shogun/examples + cp ../examples/undocumented/libshogun/*.cpp $doc/share/doc/shogun/examples/cpp + rm -r $out/share + ''; + meta = with lib; { description = "A toolbox which offers a wide range of efficient and unified machine learning methods"; homepage = "http://shogun-toolbox.org/"; license = if withSvmLight then licenses.unfree else licenses.gpl3Plus; - maintainers = with maintainers; [ edwtjo ]; + maintainers = with maintainers; [ edwtjo smancill ]; }; } diff --git a/pkgs/applications/science/machine-learning/shogun/eigen-3.4.patch b/pkgs/applications/science/machine-learning/shogun/eigen-3.4.patch new file mode 100644 index 000000000000..863bd75918b0 --- /dev/null +++ b/pkgs/applications/science/machine-learning/shogun/eigen-3.4.patch @@ -0,0 +1,74 @@ +From: Sebastián Mancilla <smancill@smancill.dev> +Subject: [PATCH] Fix compile errors when using Eigen 3.4 + +--- + .../machine/gp/MultiLaplaceInferenceMethod.cpp | 18 +++++++++--------- + 1 file changed, 9 insertions(+), 9 deletions(-) + +diff --git a/src/shogun/machine/gp/MultiLaplaceInferenceMethod.cpp b/src/shogun/machine/gp/MultiLaplaceInferenceMethod.cpp +index 2e27678d2..60050afea 100644 +--- a/src/shogun/machine/gp/MultiLaplaceInferenceMethod.cpp ++++ b/src/shogun/machine/gp/MultiLaplaceInferenceMethod.cpp +@@ -84,9 +84,9 @@ class CMultiPsiLine : public func_base + float64_t result=0; + for(index_t bl=0; bl<C; bl++) + { +- eigen_f.block(bl*n,0,n,1)=K*alpha->block(bl*n,0,n,1)*CMath::exp(log_scale*2.0); +- result+=alpha->block(bl*n,0,n,1).dot(eigen_f.block(bl*n,0,n,1))/2.0; +- eigen_f.block(bl*n,0,n,1)+=eigen_m; ++ eigen_f.segment(bl*n,n)=K*alpha->segment(bl*n,n)*CMath::exp(log_scale*2.0); ++ result+=alpha->segment(bl*n,n).dot(eigen_f.segment(bl*n,n))/2.0; ++ eigen_f.segment(bl*n,n)+=eigen_m; + } + + // get first and second derivatives of log likelihood +@@ -272,7 +272,7 @@ void CMultiLaplaceInferenceMethod::update_alpha() + { + Map<VectorXd> alpha(m_alpha.vector, m_alpha.vlen); + for(index_t bl=0; bl<C; bl++) +- eigen_mu.block(bl*n,0,n,1)=eigen_ktrtr*CMath::exp(m_log_scale*2.0)*alpha.block(bl*n,0,n,1); ++ eigen_mu.segment(bl*n,n)=eigen_ktrtr*CMath::exp(m_log_scale*2.0)*alpha.segment(bl*n,n); + + //alpha'*(f-m)/2.0 + Psi_New=alpha.dot(eigen_mu)/2.0; +@@ -316,7 +316,7 @@ void CMultiLaplaceInferenceMethod::update_alpha() + + for(index_t bl=0; bl<C; bl++) + { +- VectorXd eigen_sD=eigen_dpi.block(bl*n,0,n,1).cwiseSqrt(); ++ VectorXd eigen_sD=eigen_dpi.segment(bl*n,n).cwiseSqrt(); + LLT<MatrixXd> chol_tmp((eigen_sD*eigen_sD.transpose()).cwiseProduct(eigen_ktrtr*CMath::exp(m_log_scale*2.0))+ + MatrixXd::Identity(m_ktrtr.num_rows, m_ktrtr.num_cols)); + MatrixXd eigen_L_tmp=chol_tmp.matrixU(); +@@ -341,11 +341,11 @@ void CMultiLaplaceInferenceMethod::update_alpha() + VectorXd tmp2=m_tmp.array().rowwise().sum(); + + for(index_t bl=0; bl<C; bl++) +- eigen_b.block(bl*n,0,n,1)+=eigen_dpi.block(bl*n,0,n,1).cwiseProduct(eigen_mu.block(bl*n,0,n,1)-eigen_mean_bl-tmp2); ++ eigen_b.segment(bl*n,n)+=eigen_dpi.segment(bl*n,n).cwiseProduct(eigen_mu.segment(bl*n,n)-eigen_mean_bl-tmp2); + + Map<VectorXd> &eigen_c=eigen_W; + for(index_t bl=0; bl<C; bl++) +- eigen_c.block(bl*n,0,n,1)=eigen_E.block(0,bl*n,n,n)*(eigen_ktrtr*CMath::exp(m_log_scale*2.0)*eigen_b.block(bl*n,0,n,1)); ++ eigen_c.segment(bl*n,n)=eigen_E.block(0,bl*n,n,n)*(eigen_ktrtr*CMath::exp(m_log_scale*2.0)*eigen_b.segment(bl*n,n)); + + Map<MatrixXd> c_tmp(eigen_c.data(),n,C); + +@@ -409,7 +409,7 @@ float64_t CMultiLaplaceInferenceMethod::get_derivative_helper(SGMatrix<float64_t + { + result+=((eigen_E.block(0,bl*n,n,n)-eigen_U.block(0,bl*n,n,n).transpose()*eigen_U.block(0,bl*n,n,n)).array() + *eigen_dK.array()).sum(); +- result-=(eigen_dK*eigen_alpha.block(bl*n,0,n,1)).dot(eigen_alpha.block(bl*n,0,n,1)); ++ result-=(eigen_dK*eigen_alpha.segment(bl*n,n)).dot(eigen_alpha.segment(bl*n,n)); + } + + return result/2.0; +@@ -489,7 +489,7 @@ SGVector<float64_t> CMultiLaplaceInferenceMethod::get_derivative_wrt_mean( + result[i]=0; + //currently only compute the explicit term + for(index_t bl=0; bl<C; bl++) +- result[i]-=eigen_alpha.block(bl*n,0,n,1).dot(eigen_dmu); ++ result[i]-=eigen_alpha.segment(bl*n,n).dot(eigen_dmu); + } + + return result; diff --git a/pkgs/applications/science/machine-learning/starspace/default.nix b/pkgs/applications/science/machine-learning/starspace/default.nix index ca7500cd5c35..81e0ccc71d66 100644 --- a/pkgs/applications/science/machine-learning/starspace/default.nix +++ b/pkgs/applications/science/machine-learning/starspace/default.nix @@ -29,7 +29,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "General-purpose neural model for efficient learning of entity embeddings"; - homepage = https://ai.facebook.com/tools/starspace/; + homepage = "https://ai.facebook.com/tools/starspace/"; license = licenses.mit; platforms = platforms.unix; maintainers = [ maintainers.mausch ]; diff --git a/pkgs/applications/science/machine-learning/vowpal-wabbit/default.nix b/pkgs/applications/science/machine-learning/vowpal-wabbit/default.nix index 7ecbe09f5e18..7e9b322b4157 100644 --- a/pkgs/applications/science/machine-learning/vowpal-wabbit/default.nix +++ b/pkgs/applications/science/machine-learning/vowpal-wabbit/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchFromGitHub, cmake, boost, flatbuffers, fmt, rapidjson, spdlog, zlib }: +{ lib, stdenv, fetchFromGitHub, cmake, boost, flatbuffers, rapidjson, spdlog, zlib }: stdenv.mkDerivation rec { pname = "vowpal-wabbit"; @@ -16,7 +16,6 @@ stdenv.mkDerivation rec { buildInputs = [ boost flatbuffers - fmt rapidjson spdlog zlib diff --git a/pkgs/applications/science/math/R/default.nix b/pkgs/applications/science/math/R/default.nix index dbd2fb095e00..0a9a976f18a3 100644 --- a/pkgs/applications/science/math/R/default.nix +++ b/pkgs/applications/science/math/R/default.nix @@ -14,11 +14,11 @@ assert (!blas.isILP64) && (!lapack.isILP64); stdenv.mkDerivation rec { pname = "R"; - version = "4.1.1"; + version = "4.1.2"; src = fetchurl { url = "https://cran.r-project.org/src/base/R-${lib.versions.major version}/${pname}-${version}.tar.gz"; - sha256 = "0r6kpnxjbvb7gdfg4m1z8zc6xd225vw81wrnf05ps9ajawk06pji"; + sha256 = "sha256-IDYiXp9yB9TOCX5Ulyrs2qi0DX2ZEc0mSR+sWg+rOK8="; }; dontUseImakeConfigure = true; @@ -31,7 +31,6 @@ stdenv.mkDerivation rec { patches = [ ./no-usr-local-search-paths.patch - ./skip-check-for-aarch64.patch ]; prePatch = lib.optionalString stdenv.isDarwin '' diff --git a/pkgs/applications/science/math/R/skip-check-for-aarch64.patch b/pkgs/applications/science/math/R/skip-check-for-aarch64.patch deleted file mode 100644 index 8721bf6b422d..000000000000 --- a/pkgs/applications/science/math/R/skip-check-for-aarch64.patch +++ /dev/null @@ -1,11 +0,0 @@ -diff -ur a/src/library/stats/man/nls.Rd b/src/library/stats/man/nls.Rd ---- a/src/library/stats/man/nls.Rd 2021-05-21 19:15:02.000000000 -0300 -+++ b/src/library/stats/man/nls.Rd 2021-08-12 12:39:00.094758280 -0300 -@@ -287,7 +287,7 @@ - options(digits = 10) # more accuracy for 'trace' - ## IGNORE_RDIFF_BEGIN - try(nlm1 <- update(nlmod, control = list(tol = 1e-7))) # where central diff. work here: -- (nlm2 <- update(nlmod, control = list(tol = 8e-8, nDcentral=TRUE), trace=TRUE)) -+ (nlm2 <- update(nlmod, control = list(tol = 8e-8, nDcentral=TRUE, warnOnly=TRUE), trace=TRUE)) - ## --> convergence tolerance 4.997e-8 (in 11 iter.) - ## IGNORE_RDIFF_END diff --git a/pkgs/applications/science/math/cemu/default.nix b/pkgs/applications/science/math/cemu/default.nix index 9d56ac70d921..35b9200a4774 100644 --- a/pkgs/applications/science/math/cemu/default.nix +++ b/pkgs/applications/science/math/cemu/default.nix @@ -1,6 +1,5 @@ { fetchFromGitHub , lib -, mkDerivation , SDL2 , libGL , libarchive @@ -10,9 +9,11 @@ , git , libpng_apng , pkg-config +, wrapQtAppsHook +, stdenv }: -mkDerivation rec { +stdenv.mkDerivation rec { pname = "CEmu"; version = "1.3"; src = fetchFromGitHub { @@ -26,6 +27,7 @@ mkDerivation rec { nativeBuildInputs = [ qmake git + wrapQtAppsHook pkg-config ]; @@ -40,6 +42,7 @@ mkDerivation rec { qmakeFlags = [ "gui/qt" + "CONFIG+=ltcg" ]; meta = with lib; { @@ -49,5 +52,6 @@ mkDerivation rec { license = licenses.gpl3; maintainers = with maintainers; [ luc65r ]; platforms = [ "x86_64-linux" "x86_64-darwin" ]; + broken = stdenv.isDarwin; }; } diff --git a/pkgs/applications/science/math/csdp/default.nix b/pkgs/applications/science/math/csdp/default.nix index 02c4c134f92e..6ce03008d3a9 100644 --- a/pkgs/applications/science/math/csdp/default.nix +++ b/pkgs/applications/science/math/csdp/default.nix @@ -1,10 +1,11 @@ { lib, stdenv, fetchurl, blas, gfortran, lapack }: -stdenv.mkDerivation { - name = "csdp-6.1.1"; +stdenv.mkDerivation rec { + pname = "csdp"; + version = "6.1.1"; src = fetchurl { - url = "https://www.coin-or.org/download/source/Csdp/Csdp-6.1.1.tgz"; + url = "https://www.coin-or.org/download/source/Csdp/Csdp-${version}.tgz"; sha256 = "1f9ql6cjy2gwiyc51ylfan24v1ca9sjajxkbhszlds1lqmma8n05"; }; diff --git a/pkgs/applications/science/math/glsurf/default.nix b/pkgs/applications/science/math/glsurf/default.nix index 58b2a617bd63..808d89ef9636 100644 --- a/pkgs/applications/science/math/glsurf/default.nix +++ b/pkgs/applications/science/math/glsurf/default.nix @@ -1,5 +1,13 @@ -{ lib, stdenv, fetchurl, ocamlPackages, makeWrapper -, libGLU, libGL, freeglut, mpfr, gmp +{ lib +, stdenv +, fetchurl +, ocamlPackages +, makeWrapper +, libGLU +, libGL +, freeglut +, mpfr +, gmp , pkgsHostTarget }: @@ -7,24 +15,32 @@ let inherit (pkgsHostTarget.targetPackages.stdenv) cc; in -stdenv.mkDerivation { - name = "glsurf-3.3.1"; +stdenv.mkDerivation rec { + pname = "glsurf"; + version = "3.3.1"; src = fetchurl { - url = "https://raffalli.eu/~christophe/glsurf/glsurf-3.3.1.tar.gz"; + url = "https://raffalli.eu/~christophe/glsurf/glsurf-${version}.tar.gz"; sha256 = "0w8xxfnw2snflz8wdr2ca9f5g91w5vbyp1hwlx1v7vg83d4bwqs7"; }; nativeBuildInputs = [ makeWrapper ] ++ (with ocamlPackages; [ - ocaml findlib + ocaml + findlib ]); buildInputs = [ - freeglut libGL libGLU mpfr gmp + freeglut + libGL + libGLU + mpfr + gmp ] ++ (with ocamlPackages; [ - camlp4 lablgl camlimages_4_2_4 + camlp4 + lablgl + camlimages_4_2_4 ]); postPatch = '' diff --git a/pkgs/applications/science/math/jags/default.nix b/pkgs/applications/science/math/jags/default.nix index 5c0de33a71ae..3ddcd6206d68 100644 --- a/pkgs/applications/science/math/jags/default.nix +++ b/pkgs/applications/science/math/jags/default.nix @@ -1,9 +1,11 @@ -{lib, stdenv, fetchurl, gfortran, blas, lapack}: +{ lib, stdenv, fetchurl, gfortran, blas, lapack }: stdenv.mkDerivation rec { - name = "JAGS-4.3.0"; + pname = "JAGS"; + version = "4.3.0"; + src = fetchurl { - url = "mirror://sourceforge/mcmc-jags/${name}.tar.gz"; + url = "mirror://sourceforge/mcmc-jags/JAGS-${version}.tar.gz"; sha256 = "1z3icccg2ic56vmhyrpinlsvpq7kcaflk1731rgpvz9bk1bxvica"; }; @@ -15,8 +17,8 @@ stdenv.mkDerivation rec { meta = with lib; { description = "Just Another Gibbs Sampler"; - license = licenses.gpl2; - homepage = "http://mcmc-jags.sourceforge.net"; + license = licenses.gpl2; + homepage = "http://mcmc-jags.sourceforge.net"; maintainers = [ maintainers.andres ]; platforms = platforms.unix; }; diff --git a/pkgs/applications/science/math/mathematica/9.nix b/pkgs/applications/science/math/mathematica/9.nix index 88db3c4b2e92..90a7ada99504 100644 --- a/pkgs/applications/science/math/mathematica/9.nix +++ b/pkgs/applications/science/math/mathematica/9.nix @@ -1,4 +1,5 @@ -{ lib, stdenv +{ lib +, stdenv , coreutils , patchelf , requireFile @@ -22,11 +23,11 @@ let throw "Mathematica requires i686-linux or x86_64 linux"; in stdenv.mkDerivation rec { - - name = "mathematica-9.0.0"; + pname = "mathematica"; + version = "9.0.0"; src = requireFile { - name = "Mathematica_9.0.0_LINUX.sh"; + name = "Mathematica_${version}_LINUX.sh"; message = '' This nix expression requires that Mathematica_9.0.0_LINUX.sh is already part of the store. Find the file on your Mathematica CD @@ -61,7 +62,7 @@ stdenv.mkDerivation rec { ldpath = lib.makeLibraryPath buildInputs + lib.optionalString (stdenv.hostPlatform.system == "x86_64-linux") - (":" + lib.makeSearchPathOutput "lib" "lib64" buildInputs); + (":" + lib.makeSearchPathOutput "lib" "lib64" buildInputs); phases = "unpackPhase installPhase fixupPhase"; diff --git a/pkgs/applications/science/math/msieve/default.nix b/pkgs/applications/science/math/msieve/default.nix index 588df51554ab..6456608e7dbc 100644 --- a/pkgs/applications/science/math/msieve/default.nix +++ b/pkgs/applications/science/math/msieve/default.nix @@ -1,10 +1,11 @@ -{lib, stdenv, fetchurl, zlib, gmp, ecm }: +{ lib, stdenv, fetchurl, zlib, gmp, ecm }: -stdenv.mkDerivation { - name = "msieve-1.53"; +stdenv.mkDerivation rec { + pname = "msieve"; + version = "1.53"; src = fetchurl { - url = "mirror://sourceforge/msieve/msieve/Msieve%20v1.53/msieve153_src.tar.gz"; + url = "mirror://sourceforge/msieve/msieve/Msieve%20v${version}/msieve${lib.replaceStrings ["."] [""] version}_src.tar.gz"; sha256 = "1d1vv7j4rh3nnxsmvafi73qy7lw7n3akjlm5pjl3m936yapvmz65"; }; diff --git a/pkgs/applications/science/math/nasc/default.nix b/pkgs/applications/science/math/nasc/default.nix index dffbdaa23aa8..2fe027365cdc 100644 --- a/pkgs/applications/science/math/nasc/default.nix +++ b/pkgs/applications/science/math/nasc/default.nix @@ -83,5 +83,6 @@ stdenv.mkDerivation rec { maintainers = teams.pantheon.members; platforms = platforms.linux; license = licenses.gpl3Plus; + mainProgram = "com.github.parnold_x.nasc"; }; } diff --git a/pkgs/applications/science/math/perseus/default.nix b/pkgs/applications/science/math/perseus/default.nix index d53236d8070c..4545203dacca 100644 --- a/pkgs/applications/science/math/perseus/default.nix +++ b/pkgs/applications/science/math/perseus/default.nix @@ -1,7 +1,7 @@ { lib, stdenv, fetchurl, unzip }: stdenv.mkDerivation { - name = "perseus-4-beta"; + pname = "perseus"; version = "4-beta"; nativeBuildInputs = [ unzip ]; @@ -34,7 +34,7 @@ stdenv.mkDerivation { ''; homepage = "http://www.sas.upenn.edu/~vnanda/perseus/index.html"; license = lib.licenses.gpl3; - maintainers = with lib.maintainers; [erikryb]; + maintainers = with lib.maintainers; [ erikryb ]; platforms = lib.platforms.linux; }; } diff --git a/pkgs/applications/science/math/ries/default.nix b/pkgs/applications/science/math/ries/default.nix index e46553d7b09e..eb759723256d 100644 --- a/pkgs/applications/science/math/ries/default.nix +++ b/pkgs/applications/science/math/ries/default.nix @@ -1,10 +1,11 @@ { lib, stdenv, fetchzip }: -stdenv.mkDerivation { - name = "ries-2018-04-11"; +stdenv.mkDerivation rec { + pname = "ries"; + version = "2018.04.11-1"; # upstream does not provide a stable link src = fetchzip { - url = "https://salsa.debian.org/debian/ries/-/archive/debian/2018.04.11-1/ries-debian-2018.04.11-1.zip"; + url = "https://salsa.debian.org/debian/ries/-/archive/debian/${version}/ries-debian-${version}.zip"; sha256 = "1h2wvd4k7f0l0i1vm9niz453xdbcs3nxccmri50qyrzzzc1b0842"; }; diff --git a/pkgs/applications/science/math/sage/sage-src.nix b/pkgs/applications/science/math/sage/sage-src.nix index 3ba21cf6c8be..ed10121e5cdf 100644 --- a/pkgs/applications/science/math/sage/sage-src.nix +++ b/pkgs/applications/science/math/sage/sage-src.nix @@ -110,6 +110,14 @@ stdenv.mkDerivation rec { rev = "9808325853ba9eb035115e5b056305a1c9d362a0"; sha256 = "sha256-gJSqycCtbAVr5qnVEbHFUvIuTOvaxFIeffpzd6nH4DE="; }) + + # https://trac.sagemath.org/ticket/32420 + (fetchSageDiff { + base = "9.5.beta2"; + name = "sympy-1.9-update.patch"; + rev = "beed4e16aff32e47d0c3b1c58cb1e2f4c38590f8"; + sha256 = "sha256-3eJPfWfCrCAQ5filIn7FbzjRQeO9QyTIVl/HyRuqFtE="; + }) ]; patches = nixPatches ++ bugfixPatches ++ packageUpgradePatches; diff --git a/pkgs/applications/science/medicine/xmedcon/default.nix b/pkgs/applications/science/medicine/xmedcon/default.nix index e4a5f22891e8..bee2be729d1e 100644 --- a/pkgs/applications/science/medicine/xmedcon/default.nix +++ b/pkgs/applications/science/medicine/xmedcon/default.nix @@ -10,11 +10,11 @@ stdenv.mkDerivation rec { pname = "xmedcon"; - version = "0.21.0"; + version = "0.21.2"; src = fetchurl { - url = "https://prdownloads.sourceforge.net/${pname}/${pname}-${version}.tar.bz2"; - sha256 = "0yfnbrcil5i76z1wbg308pb1mnjbcxy6nih46qpqs038v1lhh4q8"; + url = "mirror://sourceforge/${pname}/${pname}-${version}.tar.bz2"; + sha256 = "0svff8rc3j2p47snaq1hx9mv4ydmxawpb0hf3d165g1ccjwvmm6m"; }; buildInputs = [ @@ -31,6 +31,6 @@ stdenv.mkDerivation rec { homepage = "https://xmedcon.sourceforge.io/Main/HomePage"; license = licenses.lgpl2Plus; maintainers = with maintainers; [ arianvp flokli ]; - platforms = with platforms; [ darwin linux ]; + platforms = platforms.darwin ++ platforms.linux; }; } diff --git a/pkgs/applications/science/misc/cwltool/default.nix b/pkgs/applications/science/misc/cwltool/default.nix index 21e3c47b323d..7cbd9354a372 100644 --- a/pkgs/applications/science/misc/cwltool/default.nix +++ b/pkgs/applications/science/misc/cwltool/default.nix @@ -1,22 +1,35 @@ { lib -, python3Packages +, fetchFromGitHub +, git +, nodejs +, python3 }: -python3Packages.buildPythonApplication rec { +python3.pkgs.buildPythonApplication rec { pname = "cwltool"; - version = "3.1.20210628163208"; + version = "3.1.20211104071347"; + format = "setuptools"; - src = python3Packages.fetchPypi { - inherit pname version; - sha256 = "21b885f725420413d2f87eadc5e81c08a9c91beceda89b35d1a702ec4df47e52"; + disabled = python3.pythonOlder "3.6"; + + src = fetchFromGitHub { + owner = "common-workflow-language"; + repo = pname; + rev = version; + sha256 = "sha256-tp4SdilW2PKav7b3/BchXYl33W9U0aQH6FPdOhHSvIQ="; }; postPatch = '' substituteInPlace setup.py \ - --replace 'prov == 1.5.1' 'prov' + --replace 'prov == 1.5.1' 'prov' \ + --replace "setup_requires=PYTEST_RUNNER," "" ''; - propagatedBuildInputs = with python3Packages; [ + nativeBuildInputs = [ + git + ]; + + propagatedBuildInputs = with python3.pkgs; [ argcomplete bagit coloredlogs @@ -24,18 +37,41 @@ python3Packages.buildPythonApplication rec { prov psutil pydot + rdflib + requests + ruamel-yaml schema-salad shellescape typing-extensions ]; - doCheck = false; # hard to setup - pythonImportsCheck = [ "cwltool" ]; + checkInputs = with python3.pkgs; [ + mock + nodejs + pytest-mock + pytest-xdist + pytestCheckHook + ]; + + disabledTests = [ + "test_content_types" + "test_env_filtering" + "test_http_path_mapping" + ]; + + disabledTestPaths = [ + "tests/test_udocker.py" + "tests/test_provenance.py" + ]; + + pythonImportsCheck = [ + "cwltool" + ]; meta = with lib; { + description = "Common Workflow Language reference implementation"; homepage = "https://www.commonwl.org"; license = with licenses; [ asl20 ]; - description = "Common Workflow Language reference implementation"; maintainers = with maintainers; [ veprbl ]; }; } diff --git a/pkgs/applications/science/misc/openmvs/default.nix b/pkgs/applications/science/misc/openmvs/default.nix index 731230130caf..a92920c5e795 100644 --- a/pkgs/applications/science/misc/openmvs/default.nix +++ b/pkgs/applications/science/misc/openmvs/default.nix @@ -1,9 +1,24 @@ -{ lib, stdenv, fetchFromGitHub, pkg-config, cmake -, eigen, opencv, ceres-solver, cgal, boost, vcg -, gmp, mpfr, glog, gflags, libjpeg_turbo }: +{ lib +, stdenv +, fetchFromGitHub +, pkg-config +, cmake +, eigen +, opencv +, ceres-solver +, cgal +, boost +, vcg +, gmp +, mpfr +, glog +, gflags +, libjpeg_turbo +}: stdenv.mkDerivation { - name = "openmvs-unstable-2018-05-26"; + pname = "openmvs"; + version = "unstable-2018-05-26"; src = fetchFromGitHub { owner = "cdcseacave"; diff --git a/pkgs/applications/science/misc/vite/default.nix b/pkgs/applications/science/misc/vite/default.nix index ed9d18528756..7d284d5eebb7 100644 --- a/pkgs/applications/science/misc/vite/default.nix +++ b/pkgs/applications/science/misc/vite/default.nix @@ -10,7 +10,8 @@ let }; in stdenv.mkDerivation { - name = "vite-1.2pre${rev}"; + pname = "vite"; + version = "1.2pre${rev}"; src = fetchsvn { url = "svn://scm.gforge.inria.fr/svn/vite/trunk"; diff --git a/pkgs/applications/science/molecular-dynamics/gromacs/default.nix b/pkgs/applications/science/molecular-dynamics/gromacs/default.nix index f7756f33499e..bbe8f6f9f536 100644 --- a/pkgs/applications/science/molecular-dynamics/gromacs/default.nix +++ b/pkgs/applications/science/molecular-dynamics/gromacs/default.nix @@ -19,11 +19,11 @@ let in stdenv.mkDerivation rec { pname = "gromacs"; - version = "2021.3"; + version = "2021.4"; src = fetchurl { url = "ftp://ftp.gromacs.org/pub/gromacs/gromacs-${version}.tar.gz"; - sha256 = "4QmFbsREdo373kHzBZ4xI6vbj+Vsozsag/Me1FdaHMY="; + sha256 = "07ds8abxq0k7vfpjvxb8in3fhb6lz0pbdzbmlidyzaw37qz8lw6b"; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/applications/science/physics/xflr5/default.nix b/pkgs/applications/science/physics/xflr5/default.nix index 85e20f38b668..dd3fef5bf26c 100644 --- a/pkgs/applications/science/physics/xflr5/default.nix +++ b/pkgs/applications/science/physics/xflr5/default.nix @@ -13,7 +13,7 @@ mkDerivation rec { meta = with lib; { description = "An analysis tool for airfoils, wings and planes"; - homepage = https://sourceforge.net/projects/xflr5/; + homepage = "https://sourceforge.net/projects/xflr5/"; license = licenses.gpl3; maintainers = [ maintainers.esclear ]; platforms = platforms.linux; diff --git a/pkgs/applications/search/doodle/default.nix b/pkgs/applications/search/doodle/default.nix index c4f6362465ff..2016d6afff74 100644 --- a/pkgs/applications/search/doodle/default.nix +++ b/pkgs/applications/search/doodle/default.nix @@ -1,12 +1,13 @@ { lib, stdenv, fetchurl, libextractor, gettext }: stdenv.mkDerivation rec { - name = "doodle-0.7.2"; + pname = "doodle"; + version = "0.7.2"; buildInputs = [ libextractor gettext ]; src = fetchurl { - url = "https://grothoff.org/christian/doodle/download/${name}.tar.gz"; + url = "https://grothoff.org/christian/doodle/download/doodle-${version}.tar.gz"; sha256 = "sha256-dtRPfUjhBNgN+5zHMYmszISmBv1+K6yjKsbQBiAXWRA="; }; @@ -14,7 +15,7 @@ stdenv.mkDerivation rec { homepage = "https://grothoff.org/christian/doodle/"; description = "Tool to quickly index and search documents on a computer"; license = lib.licenses.gpl2Plus; - maintainers = with lib.maintainers; [viric]; + maintainers = with lib.maintainers; [ viric ]; platforms = with lib.platforms; linux; }; } diff --git a/pkgs/applications/system/pantheon-tweaks/default.nix b/pkgs/applications/system/pantheon-tweaks/default.nix index 5834e8d96308..67e1bb32aeab 100644 --- a/pkgs/applications/system/pantheon-tweaks/default.nix +++ b/pkgs/applications/system/pantheon-tweaks/default.nix @@ -14,13 +14,13 @@ stdenv.mkDerivation rec { pname = "pantheon-tweaks"; - version = "1.0.1"; + version = "1.0.2"; src = fetchFromGitHub { owner = "pantheon-tweaks"; repo = pname; rev = version; - sha256 = "sha256-tAfDxX/RD7pO5PN/LaZ92Cj/iZtBI/EHb0+pORfYnPM="; + sha256 = "sha256-2spZ6RQ5PhBNrv/xG1TNbYsJrmuRpaZ72CeH2s8+P8g="; }; patches = [ @@ -38,9 +38,12 @@ stdenv.mkDerivation rec { buildInputs = [ gtk3 libgee - pantheon.granite - pantheon.switchboard - ]; + ] ++ (with pantheon; [ + elementary-files # settings schemas + elementary-terminal # settings schemas + granite + switchboard + ]); postPatch = '' chmod +x meson/post_install.py diff --git a/pkgs/applications/terminal-emulators/mrxvt/default.nix b/pkgs/applications/terminal-emulators/mrxvt/default.nix index bd01b0843fb1..ba6c6ab87c15 100644 --- a/pkgs/applications/terminal-emulators/mrxvt/default.nix +++ b/pkgs/applications/terminal-emulators/mrxvt/default.nix @@ -1,11 +1,27 @@ -{ lib, stdenv, fetchurl, libX11, libXft, libXi, xorgproto, libSM, libICE -, freetype, pkg-config, which }: +{ lib +, stdenv +, fetchurl +, libX11 +, libXft +, libXi +, xorgproto +, libSM +, libICE +, freetype +, pkg-config +, which +}: -stdenv.mkDerivation { - name = "mrxvt-0.5.4"; +stdenv.mkDerivation rec { + pname = "mrxvt"; + version = "0.5.4"; - buildInputs = - [ libX11 libXft libXi xorgproto libSM libICE freetype pkg-config which ]; + src = fetchurl { + url = "mirror://sourceforge/materm/mrxvt-${version}.tar.gz"; + sha256 = "1mqhmnlz32lvld9rc6c1hyz7gjw4anwf39yhbsjkikcgj1das0zl"; + }; + + buildInputs = [ libX11 libXft libXi xorgproto libSM libICE freetype pkg-config which ]; configureFlags = [ "--with-x" @@ -22,11 +38,6 @@ stdenv.mkDerivation { NIX_CFLAGS_COMPILE="$NIX_CFLAGS_COMPILE -I${freetype.dev}/include/freetype2"; ''; - src = fetchurl { - url = "mirror://sourceforge/materm/mrxvt-0.5.4.tar.gz"; - sha256 = "1mqhmnlz32lvld9rc6c1hyz7gjw4anwf39yhbsjkikcgj1das0zl"; - }; - meta = with lib; { description = "Lightweight multitabbed feature-rich X11 terminal emulator"; longDescription = " @@ -36,6 +47,7 @@ stdenv.mkDerivation { homepage = "https://sourceforge.net/projects/materm"; license = licenses.gpl2; platforms = platforms.linux; + maintainers = with maintainers; [ ]; knownVulnerabilities = [ "Usage of ANSI escape sequences causes unexpected newline-termination, leading to unexpected command execution (https://www.openwall.com/lists/oss-security/2021/05/17/1)" ]; diff --git a/pkgs/applications/terminal-emulators/roxterm/default.nix b/pkgs/applications/terminal-emulators/roxterm/default.nix index fff534aaff1a..66c96ab87986 100644 --- a/pkgs/applications/terminal-emulators/roxterm/default.nix +++ b/pkgs/applications/terminal-emulators/roxterm/default.nix @@ -1,4 +1,4 @@ -{ at-spi2-core, cmake, dbus, dbus-glib, docbook_xsl, epoxy, fetchpatch, fetchFromGitHub +{ at-spi2-core, cmake, dbus, dbus-glib, docbook_xsl, epoxy, fetchFromGitHub , glib, gtk3, harfbuzz, libXdmcp, libXtst, libpthreadstubs , libselinux, libsepol, libtasn1, libxkbcommon, libxslt, p11-kit, pcre2 , pkg-config, lib, stdenv, util-linuxMinimal, vte, wrapGAppsHook, xmlto @@ -6,25 +6,15 @@ stdenv.mkDerivation rec { pname = "roxterm"; - version = "3.7.5"; + version = "3.11.1"; src = fetchFromGitHub { owner = "realh"; repo = "roxterm"; rev = version; - sha256 = "042hchvgk9jzz035zsgnfhh8105zvspbzz6b78waylsdlgqn0pp1"; + sha256 = "1n7588bl83sp51jwjq97f526c7fkh0kq90idw3nayb4zmi530irx"; }; - patches = [ - # This is the commit directly after v3.7.5. It is needed to get roxterm to - # build correctly. It can be removed when v3.7.6 (or v3.8.0) has been - # released. - (fetchpatch { - url = "https://github.com/realh/roxterm/commit/f7c38fd48bd1810e16d82794bdfb61a9760a2fe1.patch"; - sha256 = "1v77b7ilgf8zy1npxxcyc06mq6lck6bi6lw4aksnq3mi61n5znmx"; - }) - ]; - nativeBuildInputs = [ cmake pkg-config wrapGAppsHook libxslt ]; buildInputs = diff --git a/pkgs/applications/terminal-emulators/rxvt-unicode-plugins/urxvt-perl/default.nix b/pkgs/applications/terminal-emulators/rxvt-unicode-plugins/urxvt-perl/default.nix index b9c72c97d6de..9ecaffb185cc 100644 --- a/pkgs/applications/terminal-emulators/rxvt-unicode-plugins/urxvt-perl/default.nix +++ b/pkgs/applications/terminal-emulators/rxvt-unicode-plugins/urxvt-perl/default.nix @@ -1,7 +1,8 @@ { lib, stdenv, fetchFromGitHub, wmctrl }: stdenv.mkDerivation { - name = "urxvt-perl-2015-01-16"; + pname = "urxvt-perl"; + version = "unstable-2015-01-16"; src = fetchFromGitHub { owner = "effigies"; diff --git a/pkgs/applications/terminal-emulators/rxvt-unicode-plugins/urxvt-theme-switch/default.nix b/pkgs/applications/terminal-emulators/rxvt-unicode-plugins/urxvt-theme-switch/default.nix index 303555db7224..c7510568e264 100644 --- a/pkgs/applications/terminal-emulators/rxvt-unicode-plugins/urxvt-theme-switch/default.nix +++ b/pkgs/applications/terminal-emulators/rxvt-unicode-plugins/urxvt-theme-switch/default.nix @@ -1,14 +1,15 @@ { lib, stdenv, fetchFromGitHub }: stdenv.mkDerivation rec { - rev = "cfcbcc3dd5a5b09a3fec0f6a1fea95f4a36a48c4"; - name = "urxvt-theme-switch-2014-12-21_rev${builtins.substring 0 1 rev}"; + pname = "urxvt-theme-switch"; + version = "unstable-2014-12-21"; + dontPatchShebangs = true; src = fetchFromGitHub { owner = "felixr"; repo = "urxvt-theme-switch"; - inherit rev; + rev = "cfcbcc3dd5a5b09a3fec0f6a1fea95f4a36a48c4"; sha256 = "0x27m1vdqprn3lqpwgxvffill7prmaj6j9rhgvkvi13mzl5wmlli"; }; @@ -23,6 +24,6 @@ stdenv.mkDerivation rec { homepage = "https://github.com/felixr/urxvt-theme-switch"; license = "CCBYNC"; maintainers = with maintainers; [ ]; - platforms = with platforms; unix; + platforms = platforms.unix; }; } diff --git a/pkgs/applications/terminal-emulators/rxvt-unicode-plugins/urxvt-vtwheel/default.nix b/pkgs/applications/terminal-emulators/rxvt-unicode-plugins/urxvt-vtwheel/default.nix index 446126aad748..7d3d69122f62 100644 --- a/pkgs/applications/terminal-emulators/rxvt-unicode-plugins/urxvt-vtwheel/default.nix +++ b/pkgs/applications/terminal-emulators/rxvt-unicode-plugins/urxvt-vtwheel/default.nix @@ -1,13 +1,13 @@ { lib, stdenv, fetchgit, perl }: stdenv.mkDerivation { - - name = "rxvt-unicode-vtwheel-0.3.2"; + pname = "rxvt-unicode-vtwheel"; + version = "0.3.2"; src = fetchgit { - url = "https://aur.archlinux.org/urxvt-vtwheel.git"; - rev = "36d3e861664aeae36a45f96100f10f8fe2218035"; - sha256 = "1h3vrsbli5q9kr84j5ijbivlhpwlh3l8cv233pg362v2zz4ja8i7"; + url = "https://aur.archlinux.org/urxvt-vtwheel.git"; + rev = "36d3e861664aeae36a45f96100f10f8fe2218035"; + sha256 = "1h3vrsbli5q9kr84j5ijbivlhpwlh3l8cv233pg362v2zz4ja8i7"; }; installPhase = '' diff --git a/pkgs/applications/terminal-emulators/tilix/default.nix b/pkgs/applications/terminal-emulators/tilix/default.nix index a5c4b4574df3..c217ae7f991d 100644 --- a/pkgs/applications/terminal-emulators/tilix/default.nix +++ b/pkgs/applications/terminal-emulators/tilix/default.nix @@ -26,7 +26,7 @@ stdenv.mkDerivation rec { src = fetchFromGitHub { owner = "gnunn1"; repo = "tilix"; - rev = "${version}"; + rev = version; sha256 = "sha256:020gr4q7kmqq8vnsh8rw97gf1p2n1yq4d7ncyjjh9l13zkaxqqv9"; }; diff --git a/pkgs/applications/version-management/commitizen/node-packages.nix b/pkgs/applications/version-management/commitizen/node-packages.nix index 396dedf56fd9..bee45d1727ce 100644 --- a/pkgs/applications/version-management/commitizen/node-packages.nix +++ b/pkgs/applications/version-management/commitizen/node-packages.nix @@ -9061,7 +9061,7 @@ in buildInputs = globalBuildInputs; meta = { description = "Git commit, but play nice with conventions."; - homepage = https://github.com/commitizen/cz-cli; + homepage = "https://github.com/commitizen/cz-cli"; license = "MIT"; }; production = false; diff --git a/pkgs/applications/version-management/cvs/default.nix b/pkgs/applications/version-management/cvs/default.nix index 2879b688c6a5..9f039c4ab004 100644 --- a/pkgs/applications/version-management/cvs/default.nix +++ b/pkgs/applications/version-management/cvs/default.nix @@ -1,10 +1,11 @@ { lib, stdenv, fetchurl, fetchpatch, nano }: -stdenv.mkDerivation { - name = "cvs-1.12.13"; +stdenv.mkDerivation rec { + pname = "cvs"; + version = "1.12.13"; src = fetchurl { - url = "mirror://savannah/cvs/source/feature/1.12.13/cvs-1.12.13.tar.bz2"; + url = "mirror://savannah/cvs/source/feature/${version}/cvs-${version}.tar.bz2"; sha256 = "0pjir8cwn0087mxszzbsi1gyfc6373vif96cw4q3m1x6p49kd1bq"; }; diff --git a/pkgs/applications/version-management/git-and-tools/git-big-picture/default.nix b/pkgs/applications/version-management/git-and-tools/git-big-picture/default.nix index 35aada8b870f..decd3c51a392 100644 --- a/pkgs/applications/version-management/git-and-tools/git-big-picture/default.nix +++ b/pkgs/applications/version-management/git-and-tools/git-big-picture/default.nix @@ -21,7 +21,6 @@ python3Packages.buildPythonApplication rec { description = "Tool for visualization of Git repositories"; homepage = "https://github.com/git-big-picture/git-big-picture"; license = lib.licenses.gpl3Plus; - platforms = lib.platforms.linux; maintainers = [ lib.maintainers.nthorne ]; }; } diff --git a/pkgs/applications/version-management/git-and-tools/git-machete/default.nix b/pkgs/applications/version-management/git-and-tools/git-machete/default.nix index 97b96f7461f6..f08a74bd3401 100644 --- a/pkgs/applications/version-management/git-and-tools/git-machete/default.nix +++ b/pkgs/applications/version-management/git-and-tools/git-machete/default.nix @@ -11,13 +11,13 @@ buildPythonApplication rec { pname = "git-machete"; - version = "3.4.1"; + version = "3.5.0"; src = fetchFromGitHub { owner = "virtuslab"; repo = pname; rev = "v${version}"; - sha256 = "sha256-drfMD9tQe1dc61MH3Cxu9oin137f4FsZJY3X2kDHdh4="; + sha256 = "sha256-kR37TClFMkoe4e46g/omfwZCrQFr7gukW7I70WI9+dw="; }; nativeBuildInputs = [ installShellFiles ]; diff --git a/pkgs/applications/version-management/git-and-tools/git2cl/default.nix b/pkgs/applications/version-management/git-and-tools/git2cl/default.nix index a1c63538220b..b68179b182bc 100644 --- a/pkgs/applications/version-management/git-and-tools/git2cl/default.nix +++ b/pkgs/applications/version-management/git-and-tools/git2cl/default.nix @@ -1,7 +1,8 @@ { fetchgit, lib, stdenv, perl }: -stdenv.mkDerivation { - name = "git2cl-20080827"; +stdenv.mkDerivation rec { + pname = "git2cl"; + version = "unstable-2008-08-27"; src = fetchgit { url = "git://repo.or.cz/git2cl.git"; diff --git a/pkgs/applications/version-management/git-and-tools/glitter/default.nix b/pkgs/applications/version-management/git-and-tools/glitter/default.nix index d256e212ecae..7b19d754a720 100644 --- a/pkgs/applications/version-management/git-and-tools/glitter/default.nix +++ b/pkgs/applications/version-management/git-and-tools/glitter/default.nix @@ -2,22 +2,25 @@ rustPlatform.buildRustPackage rec { pname = "glitter"; - version = "1.4.10"; + version = "1.5.4"; src = fetchFromGitHub { owner = "milo123459"; repo = pname; rev = "v${version}"; - sha256 = "sha256-5yv0RZfGLS/cxOxettHQHSPldcq+xa+TNj6dDIAmzOM="; + sha256 = "sha256-SJp/iRF5os0f+WsHnLtcqmj0uD7fe8iODJ4F+gpWtJo="; }; - cargoSha256 = "sha256-xG7aic7NCcltz9YmQ4V40/h3OR8Vt5IgApp4yoDbPuc="; + cargoSha256 = "sha256-CVqLwXgoHQjJ6NMyiZkxVaTO6qgzBQz8mH/6dsyhhYY="; # tests require it to be in a git repository preCheck = '' git init ''; + # error: Found argument '--test-threads' which wasn't expected, or isn't valid in this context + checkFlags = [ "--skip" "runs_correctly" ]; + meta = with lib; { description = "A git wrapper that allows you to compress multiple commands into one"; homepage = "https://github.com/milo123459/glitter"; diff --git a/pkgs/applications/version-management/git-and-tools/stgit/default.nix b/pkgs/applications/version-management/git-and-tools/stgit/default.nix index 02888b3f87ef..1c3fdf90aa79 100644 --- a/pkgs/applications/version-management/git-and-tools/stgit/default.nix +++ b/pkgs/applications/version-management/git-and-tools/stgit/default.nix @@ -12,13 +12,13 @@ python3Packages.buildPythonApplication rec { pname = "stgit"; - version = "1.3"; + version = "1.4"; src = fetchFromGitHub { owner = "stacked-git"; repo = "stgit"; rev = "v${version}"; - sha256 = "0wa3ba7afnbb1h08n9xr0cqsg93rx0qd9jv8a34mmpp0lpijmjw6"; + sha256 = "0yx81d61kp33h7n0c14wvcrh8vvjjjq4xjh1qwq2sdbmqc43p3hg"; }; nativeBuildInputs = [ installShellFiles asciidoc xmlto docbook_xsl docbook_xml_dtd_45 ]; diff --git a/pkgs/applications/version-management/git-and-tools/subgit/default.nix b/pkgs/applications/version-management/git-and-tools/subgit/default.nix index 8f06050d0902..6d6a3a4f9882 100644 --- a/pkgs/applications/version-management/git-and-tools/subgit/default.nix +++ b/pkgs/applications/version-management/git-and-tools/subgit/default.nix @@ -1,7 +1,8 @@ { lib, stdenv, fetchurl, unzip, makeWrapper, jre }: stdenv.mkDerivation rec { - name = "subgit-3.3.11"; + pname = "subgit"; + version = "3.3.11"; meta = { description = "A tool for a smooth, stress-free SVN to Git migration"; @@ -20,7 +21,7 @@ stdenv.mkDerivation rec { ''; src = fetchurl { - url = "https://subgit.com/download/${name}.zip"; + url = "https://subgit.com/download/subgit-${version}.zip"; sha256 = "sha256-ltTpmXPCIGTmVDxKc6oelMEzQWXRbIf0NESzRugaXo0="; }; } diff --git a/pkgs/applications/version-management/gitlab/data.json b/pkgs/applications/version-management/gitlab/data.json index 279d17937ec2..004560bff995 100644 --- a/pkgs/applications/version-management/gitlab/data.json +++ b/pkgs/applications/version-management/gitlab/data.json @@ -1,14 +1,14 @@ { - "version": "14.4.1", - "repo_hash": "0sm44iyn32frc7njg6ypgbcip77mj5c3agn3cihk3lz7z5kr48lm", + "version": "14.4.2", + "repo_hash": "0zhac96b6p7p9vpj083ajfsj5a2fwkv602zxv79cjvpd924c5ws2", "yarn_hash": "0l0lgcgxaira980a1y550pfsm4f2pw97gi8s5pghyfil2v2lyxyw", "owner": "gitlab-org", "repo": "gitlab", - "rev": "v14.4.1-ee", + "rev": "v14.4.2-ee", "passthru": { - "GITALY_SERVER_VERSION": "14.4.1", + "GITALY_SERVER_VERSION": "14.4.2", "GITLAB_PAGES_VERSION": "1.46.0", "GITLAB_SHELL_VERSION": "13.21.1", - "GITLAB_WORKHORSE_VERSION": "14.4.1" + "GITLAB_WORKHORSE_VERSION": "14.4.2" } } diff --git a/pkgs/applications/version-management/gitlab/default.nix b/pkgs/applications/version-management/gitlab/default.nix index fe43c494dd42..c386add243e2 100644 --- a/pkgs/applications/version-management/gitlab/default.nix +++ b/pkgs/applications/version-management/gitlab/default.nix @@ -5,7 +5,7 @@ }: let - data = (builtins.fromJSON (builtins.readFile ./data.json)); + data = lib.importJSON ./data.json; version = data.version; src = fetchFromGitLab { @@ -198,7 +198,7 @@ stdenv.mkDerivation { meta = with lib; { homepage = "http://www.gitlab.com/"; platforms = platforms.linux; - maintainers = with maintainers; [ fpletz globin krav talyz yuka ]; + maintainers = with maintainers; [ fpletz globin krav talyz yayayayaka yuka ]; } // (if gitlabEnterprise then { license = licenses.unfreeRedistributable; # https://gitlab.com/gitlab-org/gitlab-ee/raw/master/LICENSE diff --git a/pkgs/applications/version-management/gitlab/gitaly/default.nix b/pkgs/applications/version-management/gitlab/gitaly/default.nix index c6f4df537748..41e5908c629d 100644 --- a/pkgs/applications/version-management/gitlab/gitaly/default.nix +++ b/pkgs/applications/version-management/gitlab/gitaly/default.nix @@ -20,7 +20,8 @@ let }; }; }; - version = "14.4.1"; + + version = "14.4.2"; gitaly_package = "gitlab.com/gitlab-org/gitaly/v${lib.versions.major version}"; in @@ -32,7 +33,7 @@ buildGoModule { owner = "gitlab-org"; repo = "gitaly"; rev = "v${version}"; - sha256 = "sha256-bATqaB7q3MlyacEiBXdcEDs+xsJUbULVnYTSpEznxFg="; + sha256 = "sha256-MzYUSoG+HjW9o2zn6Q9Pd5NfI7hZkw1xFXOXHbbxJvo="; }; vendorSha256 = "sha256-9RhPQosen70E9t1iAoc2SeKs9pYMMpMqgXLekWfKNf8="; diff --git a/pkgs/applications/version-management/gitlab/gitlab-workhorse/default.nix b/pkgs/applications/version-management/gitlab/gitlab-workhorse/default.nix index 63df2be4a27a..eaae6eacf44f 100644 --- a/pkgs/applications/version-management/gitlab/gitlab-workhorse/default.nix +++ b/pkgs/applications/version-management/gitlab/gitlab-workhorse/default.nix @@ -1,11 +1,11 @@ { lib, fetchFromGitLab, git, buildGoModule }: let - data = (builtins.fromJSON (builtins.readFile ../data.json)); + data = lib.importJSON ../data.json; in buildGoModule rec { pname = "gitlab-workhorse"; - version = "14.4.1"; + version = "14.4.2"; src = fetchFromGitLab { owner = data.owner; diff --git a/pkgs/applications/version-management/mercurial/default.nix b/pkgs/applications/version-management/mercurial/default.nix index 3780be96fd6f..eea3e7afb774 100644 --- a/pkgs/applications/version-management/mercurial/default.nix +++ b/pkgs/applications/version-management/mercurial/default.nix @@ -13,11 +13,11 @@ let self = python3Packages.buildPythonApplication rec { pname = "mercurial"; - version = "5.9.1"; + version = "5.9.3"; src = fetchurl { url = "https://mercurial-scm.org/release/mercurial-${version}.tar.gz"; - sha256 = "09wzyhyajy1dbp5kxkmvs9x8jk964wri19p5jgf83mv27i1zkvrj"; + sha256 = "sha256-O0P2iXetD6dap/HlyPCoO6k1YhqyOWEpq7SY5W0b4I4="; }; format = "other"; @@ -27,7 +27,7 @@ let cargoDeps = if rustSupport then rustPlatform.fetchCargoTarball { inherit src; name = "${pname}-${version}"; - sha256 = "1f7q0kmp46rphw38rlzh1yvpn3rdjdnzzbxzjkrjks8n1gm8baca"; + sha256 = "sha256:1d911jaawdrcv2mdhlp2ylr10791zj7dhb69aiw5yy7vn7gry82n"; sourceRoot = "${pname}-${version}/rust"; } else null; cargoRoot = if rustSupport then "rust" else null; diff --git a/pkgs/applications/version-management/monotone-viz/graphviz-2.0.nix b/pkgs/applications/version-management/monotone-viz/graphviz-2.0.nix index 541a2262f999..e3c48c5724f7 100644 --- a/pkgs/applications/version-management/monotone-viz/graphviz-2.0.nix +++ b/pkgs/applications/version-management/monotone-viz/graphviz-2.0.nix @@ -1,25 +1,49 @@ -{ lib, stdenv, fetchurl, pkg-config, xlibsWrapper, libpng, libjpeg, expat, libXaw -, bison, libtool, fontconfig, pango, gd, libwebp +{ lib +, stdenv +, fetchurl +, pkg-config +, xlibsWrapper +, libpng +, libjpeg +, expat +, libXaw +, bison +, libtool +, fontconfig +, pango +, gd +, libwebp }: stdenv.mkDerivation rec { - name = "graphviz-2.0"; + pname = "graphviz"; + version = "2.0"; src = fetchurl { - url = "http://www.graphviz.org/pub/graphviz/ARCHIVE/${name}.tar.gz"; + url = "http://www.graphviz.org/pub/graphviz/ARCHIVE/graphviz-${version}.tar.gz"; sha256 = "39b8e1f2ba4cc1f5bdc8e39c7be35e5f831253008e4ee2c176984f080416676c"; }; nativeBuildInputs = [ pkg-config ]; buildInputs = [ - xlibsWrapper libpng libjpeg expat libXaw bison - libtool fontconfig pango gd libwebp + xlibsWrapper + libpng + libjpeg + expat + libXaw + bison + libtool + fontconfig + pango + gd + libwebp ]; hardeningDisable = [ "format" "fortify" ]; configureFlags = - [ "--with-pngincludedir=${libpng.dev}/include" + [ + "--with-pngincludedir=${libpng.dev}/include" "--with-pnglibdir=${libpng.out}/lib" "--with-jpegincludedir=${libjpeg.dev}/include" "--with-jpeglibdir=${libjpeg.out}/lib" diff --git a/pkgs/applications/version-management/tkcvs/default.nix b/pkgs/applications/version-management/tkcvs/default.nix index 6a9e910f8012..36e9154571be 100644 --- a/pkgs/applications/version-management/tkcvs/default.nix +++ b/pkgs/applications/version-management/tkcvs/default.nix @@ -1,11 +1,11 @@ -{lib, stdenv, fetchurl, tcl, tk}: +{ lib, stdenv, fetchurl, tcl, tk }: -stdenv.mkDerivation -{ - name = "tkcvs-8.2.1"; +stdenv.mkDerivation rec { + pname = "tkcvs"; + version = "8.2.1"; src = fetchurl { - url = "mirror://sourceforge/tkcvs/tkcvs_8_2_1.tar.gz"; + url = "mirror://sourceforge/tkcvs/tkcvs_${lib.replaceStrings ["."] ["_"] version}.tar.gz"; sha256 = "0kvj6rcx1153wq0n1lmd8imbrki6xy5wxghwzlb9i15l65sclg3i"; }; diff --git a/pkgs/applications/video/cinelerra/default.nix b/pkgs/applications/video/cinelerra/default.nix index 75d3cdbcc667..0ce0623ec9d9 100644 --- a/pkgs/applications/video/cinelerra/default.nix +++ b/pkgs/applications/video/cinelerra/default.nix @@ -1,13 +1,50 @@ -{ lib, stdenv, fetchFromGitHub, autoconf, automake, libtool -, pkg-config, faad2, faac, a52dec, alsa-lib, fftw, lame, libavc1394 -, libiec61883, libraw1394, libsndfile, libvorbis, libogg, libjpeg -, libtiff, freetype, mjpegtools, x264, gettext, openexr -, libXext, libXxf86vm, libXv, libXi, libX11, libXft, xorgproto, libtheora, libpng -, libdv, libuuid, file, nasm, perl -, fontconfig, intltool }: +{ lib +, stdenv +, fetchFromGitHub +, autoconf +, automake +, libtool +, pkg-config +, faad2 +, faac +, a52dec +, alsa-lib +, fftw +, lame +, libavc1394 +, libiec61883 +, libraw1394 +, libsndfile +, libvorbis +, libogg +, libjpeg +, libtiff +, freetype +, mjpegtools +, x264 +, gettext +, openexr +, libXext +, libXxf86vm +, libXv +, libXi +, libX11 +, libXft +, xorgproto +, libtheora +, libpng +, libdv +, libuuid +, file +, nasm +, perl +, fontconfig +, intltool +}: stdenv.mkDerivation { - name = "cinelerra-cv-2021-02-14"; + pname = "cinelerra-cv"; + version = "unstable-2021-02-14"; src = fetchFromGitHub { owner = "cinelerra-cv-team"; @@ -26,20 +63,46 @@ stdenv.mkDerivation { preBuild = '' make -C cinelerra versioninfo.h ''; + enableParallelBuilding = true; nativeBuildInputs = [ automake autoconf libtool pkg-config file intltool ]; - buildInputs = - [ faad2 faac - a52dec alsa-lib fftw lame libavc1394 libiec61883 - libraw1394 libsndfile libvorbis libogg libjpeg libtiff freetype - mjpegtools x264 gettext openexr - libXext libXxf86vm libXv libXi libX11 libXft xorgproto - libtheora libpng libdv libuuid - nasm - perl - fontconfig - ]; + + buildInputs = [ + faad2 + faac + a52dec + alsa-lib + fftw + lame + libavc1394 + libiec61883 + libraw1394 + libsndfile + libvorbis + libogg + libjpeg + libtiff + freetype + mjpegtools + x264 + gettext + openexr + libXext + libXxf86vm + libXv + libXi + libX11 + libXft + xorgproto + libtheora + libpng + libdv + libuuid + nasm + perl + fontconfig + ]; meta = with lib; { description = "Professional video editing and compositing environment (community version)"; diff --git a/pkgs/applications/video/coriander/default.nix b/pkgs/applications/video/coriander/default.nix index 09289840030e..7f57c79c5fe5 100644 --- a/pkgs/applications/video/coriander/default.nix +++ b/pkgs/applications/video/coriander/default.nix @@ -1,11 +1,24 @@ -{ lib, stdenv, fetchurl, pkg-config, glib, gtk2, libgnomeui, libXv, libraw1394, libdc1394 -, SDL, automake, GConf }: +{ lib +, stdenv +, fetchurl +, pkg-config +, glib +, gtk2 +, libgnomeui +, libXv +, libraw1394 +, libdc1394 +, SDL +, automake +, GConf +}: -stdenv.mkDerivation { - name = "coriander-2.0.1"; +stdenv.mkDerivation rec { + pname = "coriander"; + version = "2.0.1"; src = fetchurl { - url = "http://damien.douxchamps.net/ieee1394/coriander/archives/coriander-2.0.1.tar.gz"; + url = "http://damien.douxchamps.net/ieee1394/coriander/archives/coriander-${version}.tar.gz"; sha256 = "0l6hpfgy5r4yardilmdrggsnn1fbfww516sk5a90g1740cd435x5"; }; @@ -20,7 +33,7 @@ stdenv.mkDerivation { homepage = "https://damien.douxchamps.net/ieee1394/coriander/"; description = "GUI for controlling a Digital Camera through the IEEE1394 bus"; license = lib.licenses.gpl3Plus; - maintainers = with lib.maintainers; [viric]; + maintainers = with lib.maintainers; [ viric ]; platforms = with lib.platforms; linux; }; } diff --git a/pkgs/applications/video/dvd-slideshow/default.nix b/pkgs/applications/video/dvd-slideshow/default.nix index 95f3169718d9..165cb4ab4d63 100644 --- a/pkgs/applications/video/dvd-slideshow/default.nix +++ b/pkgs/applications/video/dvd-slideshow/default.nix @@ -1,7 +1,7 @@ -{ stdenv, lib, fetchurl, writeScript, cdrtools, dvdauthor, ffmpeg_3, imagemagick, lame, mjpegtools, sox, transcode, vorbis-tools, runtimeShell }: +{ stdenv, lib, fetchurl, writeScript, cdrtools, dvdauthor, ffmpeg, imagemagick, lame, mjpegtools, sox, transcode, vorbis-tools, runtimeShell }: let - binPath = lib.makeBinPath [ cdrtools dvdauthor ffmpeg_3 imagemagick lame mjpegtools sox transcode vorbis-tools ]; + binPath = lib.makeBinPath [ cdrtools dvdauthor ffmpeg imagemagick lame mjpegtools sox transcode vorbis-tools ]; wrapper = writeScript "dvd-slideshow.sh" '' #!${runtimeShell} diff --git a/pkgs/applications/video/dvdauthor/default.nix b/pkgs/applications/video/dvdauthor/default.nix index 502c4c69c3f8..941b0808886e 100644 --- a/pkgs/applications/video/dvdauthor/default.nix +++ b/pkgs/applications/video/dvdauthor/default.nix @@ -1,15 +1,28 @@ -{ lib, stdenv, fetchurl, imagemagick, libdvdread, libxml2, freetype, fribidi, libpng, zlib, pkg-config -, flex, bison }: +{ lib +, stdenv +, fetchurl +, imagemagick +, libdvdread +, libxml2 +, freetype +, fribidi +, libpng +, zlib +, pkg-config +, flex +, bison +}: stdenv.mkDerivation rec { - name = "dvdauthor-0.7.1"; + pname = "dvdauthor"; + version = "0.7.1"; src = fetchurl { - url = "mirror://sourceforge/dvdauthor/${name}.tar.gz"; + url = "mirror://sourceforge/dvdauthor/dvdauthor-${version}.tar.gz"; sha256 = "1s8zqlim0s3hk5sbdsilip3qqh0yv05l1jwx49d9rsy614dv27sh"; }; - buildInputs = [ libpng freetype libdvdread libxml2 zlib fribidi imagemagick flex bison]; + buildInputs = [ libpng freetype libdvdread libxml2 zlib fribidi imagemagick flex bison ]; nativeBuildInputs = [ pkg-config ]; patches = [ diff --git a/pkgs/applications/video/entangle/default.nix b/pkgs/applications/video/entangle/default.nix index 1575421175d3..6d8905d2c003 100644 --- a/pkgs/applications/video/entangle/default.nix +++ b/pkgs/applications/video/entangle/default.nix @@ -35,6 +35,7 @@ , udev , util-linux , xorg +, zstd }: stdenv.mkDerivation rec { @@ -86,6 +87,7 @@ stdenv.mkDerivation rec { pcre udev util-linux + zstd ] ++ (with xorg; [ libXdmcp libXtst diff --git a/pkgs/applications/video/freetube/default.nix b/pkgs/applications/video/freetube/default.nix index aa32e8828e06..c5a2a3138609 100644 --- a/pkgs/applications/video/freetube/default.nix +++ b/pkgs/applications/video/freetube/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "freetube"; - version = "0.15.0"; + version = "0.15.1"; src = fetchurl { url = "https://github.com/FreeTubeApp/FreeTube/releases/download/v${version}-beta/freetube_${version}_amd64.AppImage"; - sha256 = "sha256-52cVY3SBT048tErydk3l27yBvM/FMVpEMf5miAeInDM="; + sha256 = "sha256-7jmKD6HjsTqW/SRmD4xI3uQJnwmyDgjJZRJX9XygZyU="; }; appimageContents = appimageTools.extractType2 { diff --git a/pkgs/applications/video/handbrake/default.nix b/pkgs/applications/video/handbrake/default.nix index 5007f7419aeb..ce64a702379c 100644 --- a/pkgs/applications/video/handbrake/default.nix +++ b/pkgs/applications/video/handbrake/default.nix @@ -7,85 +7,120 @@ # be nice to add the native GUI (and/or the GTK GUI) as an option too, but that # requires invoking the Xcode build system, which is non-trivial for now. -{ stdenv, lib, fetchFromGitHub, fetchpatch, +{ stdenv +, lib +, fetchFromGitHub +, nixosTests # Main build tools - pkg-config, autoconf, automake, libtool, m4, xz, python3, - numactl, +, pkg-config +, autoconf +, automake +, libtool +, m4 +, xz +, python3 +, numactl +, writeText # Processing, video codecs, containers - ffmpeg-full, nv-codec-headers, libogg, x264, x265, libvpx, libtheora, dav1d, +, ffmpeg-full +, nv-codec-headers +, libogg +, x264 +, x265 +, libvpx +, libtheora +, dav1d +, zimg # Codecs, audio - libopus, lame, libvorbis, a52dec, speex, libsamplerate, +, libopus +, lame +, libvorbis +, a52dec +, speex +, libsamplerate # Text processing - libiconv, fribidi, fontconfig, freetype, libass, jansson, libxml2, harfbuzz, +, libiconv +, fribidi +, fontconfig +, freetype +, libass +, jansson +, libxml2 +, harfbuzz +, libjpeg_turbo # Optical media - libdvdread, libdvdnav, libdvdcss, libbluray, +, libdvdread +, libdvdnav +, libdvdcss +, libbluray # Darwin-specific - AudioToolbox ? null, - Foundation ? null, - libobjc ? null, - VideoToolbox ? null, +, AudioToolbox ? null +, Foundation ? null +, libobjc ? null +, VideoToolbox ? null # GTK # NOTE: 2019-07-19: The gtk3 package has a transitive dependency on dbus, # which in turn depends on systemd. systemd is not supported on Darwin, so # for now we disable GTK GUI support on Darwin. (It may be possible to remove # this restriction later.) - useGtk ? !stdenv.isDarwin, wrapGAppsHook ? null, - intltool ? null, - glib ? null, - gtk3 ? null, - libappindicator-gtk3 ? null, - libnotify ? null, - gst_all_1 ? null, - dbus-glib ? null, - udev ? null, - libgudev ? null, - hicolor-icon-theme ? null, +, useGtk ? !stdenv.isDarwin +, wrapGAppsHook +, intltool +, glib +, gtk3 +, libappindicator-gtk3 +, libnotify +, gst_all_1 +, dbus-glib +, udev +, libgudev +, hicolor-icon-theme # FDK - useFdk ? false, fdk_aac ? null +, useFdk ? false +, fdk_aac }: -stdenv.mkDerivation rec { - pname = "handbrake"; - version = "1.3.3"; +let + version = "1.4.2"; src = fetchFromGitHub { owner = "HandBrake"; repo = "HandBrake"; rev = version; - sha256 = "0bsmk37543zv3p32a7wxnh2w483am23ha2amj339q3nnb4142krn"; - extraPostFetch = '' - echo "DATE=$(date +"%F %T %z" -r $out/NEWS.markdown)" > $out/version.txt - ''; + sha256 = "sha256-Usz2+U1Wb8yJ5W2HqV0FqBaaE25fuVKk/NwKBHaKzwk="; }; - # Remove with a release after 1.3.3 - patches = [ - (fetchpatch { - name = "audio-fix-ffmpeg-4_4"; - url = "https://github.com/HandBrake/HandBrake/commit/f28289fb06ab461ea082b4be56d6d1504c0c31c2.patch"; - sha256 = "sha256:1zcwa4h97d8wjspb8kbd8b1jg0a9vvmv9zaphzry4m9q0bj3h3kz"; - }) - ]; + versionFile = writeText "version.txt" '' + BRANCH=${versions.majorMinor version}.x + DATE=1970-01-01 00:00:01 +0000 + HASH=${src.rev} + REV=${src.rev} + SHORTHASH=${src.rev} + TAG=${version} + URL=${src.meta.homepage} + ''; + + inherit (lib) optional optionals optionalString versions; + +in +stdenv.mkDerivation rec { + pname = "handbrake"; + inherit version src; - # we put as little as possible in src.extraPostFetch as it's much easier to - # add to it here without having to fiddle with src.sha256 - # only DATE and HASH are absolutely necessary postPatch = '' - cat >> version.txt <<_EOF -HASH=${src.rev} -SHORTHASH=${src.rev} -TAG=${version} -URL=${src.meta.homepage} -_EOF + install -Dm444 ${versionFile} ${versionFile.name} patchShebangs scripts + substituteInPlace libhb/hb.c \ + --replace 'return hb_version;' 'return "${version}";' + # Force using nixpkgs dependencies sed -i '/MODULES += contrib/d' make/include/main.defs sed -e 's/^[[:space:]]*\(meson\|ninja\|nasm\)[[:space:]]*= ToolProbe.*$//g' \ -e '/ ## Additional library and tool checks/,/ ## MinGW specific library and tool checks/d' \ -i make/configure.py - '' + (lib.optionalString stdenv.isDarwin '' + '' + optionalString stdenv.isDarwin '' # Use the Nix-provided libxml2 instead of the patched version available on # the Handbrake website. substituteInPlace libhb/module.defs \ @@ -95,51 +130,92 @@ _EOF # which it isn't in the Nix context. (The actual build goes fine without # xcodebuild.) sed -e '/xcodebuild = ToolProbe/s/abort=.\+)/abort=False)/' -i make/configure.py - '') + (lib.optionalString stdenv.isLinux '' + '' + optionalString stdenv.isLinux '' # Use the Nix-provided libxml2 instead of the system-provided one. substituteInPlace libhb/module.defs \ --replace /usr/include/libxml2 ${libxml2.dev}/include/libxml2 - ''); + ''; nativeBuildInputs = [ - pkg-config autoconf automake libtool m4 python3 - ] ++ lib.optionals useGtk [ intltool wrapGAppsHook ]; + autoconf + automake + libtool + m4 + pkg-config + python3 + ] + ++ optionals useGtk [ intltool wrapGAppsHook ]; buildInputs = [ - ffmpeg-full libogg libtheora x264 x265 libvpx dav1d - libopus lame libvorbis a52dec speex libsamplerate - libiconv fribidi fontconfig freetype libass jansson libxml2 harfbuzz - libdvdread libdvdnav libdvdcss libbluray xz - ] ++ lib.optional (!stdenv.isDarwin) numactl - ++ lib.optionals useGtk [ - glib gtk3 libappindicator-gtk3 libnotify - gst_all_1.gstreamer gst_all_1.gst-plugins-base dbus-glib udev - libgudev hicolor-icon-theme - ] ++ lib.optional useFdk fdk_aac - ++ lib.optionals stdenv.isDarwin [ AudioToolbox Foundation libobjc VideoToolbox ] + a52dec + dav1d + ffmpeg-full + fontconfig + freetype + fribidi + harfbuzz + jansson + lame + libass + libbluray + libdvdcss + libdvdnav + libdvdread + libiconv + libjpeg_turbo + libogg + libopus + libsamplerate + libtheora + libvorbis + libvpx + libxml2 + speex + x264 + x265 + xz + zimg + ] + ++ optional (!stdenv.isDarwin) numactl + ++ optionals useGtk [ + dbus-glib + glib + gst_all_1.gst-plugins-base + gst_all_1.gstreamer + gtk3 + hicolor-icon-theme + libappindicator-gtk3 + libgudev + libnotify + udev + ] + ++ optional useFdk fdk_aac + ++ optionals stdenv.isDarwin [ AudioToolbox Foundation libobjc VideoToolbox ] # NOTE: 2018-12-27: Handbrake supports nv-codec-headers for Linux only, # look at ./make/configure.py search "enable_nvenc" - ++ lib.optional stdenv.isLinux nv-codec-headers; + ++ optional stdenv.isLinux nv-codec-headers; configureFlags = [ "--disable-df-fetch" "--disable-df-verify" - (if useGtk then "--disable-gtk-update-checks" else "--disable-gtk") - (if useFdk then "--enable-fdk-aac" else "") - (if stdenv.isDarwin then "--disable-xcode" else "") - ] ++ lib.optional (stdenv.isx86_32 || stdenv.isx86_64) "--harden"; + "--disable-gtk-update-checks" + ] + ++ optional (!useGtk) "--disable-gtk" + ++ optional useFdk "--enable-fdk-aac" + ++ optional stdenv.isDarwin "--disable-xcode" + ++ optional (stdenv.isx86_32 || stdenv.isx86_64) "--harden"; # NOTE: 2018-12-27: Check NixOS HandBrake test if changing - NIX_LDFLAGS = [ - "-lx265" - ]; + NIX_LDFLAGS = [ "-lx265" ]; - preBuild = '' - cd build - ''; + makeFlags = [ "--directory=build" ]; + + passthru.tests = { + basic-conversion = nixosTests.handbrake; + }; meta = with lib; { - homepage = "http://handbrake.fr/"; + homepage = "https://handbrake.fr/"; description = "A tool for converting video files and ripping DVDs"; longDescription = '' Tool for converting and remuxing video files @@ -149,8 +225,9 @@ _EOF CLI - `HandbrakeCLI` GTK GUI - `ghb` ''; - license = licenses.gpl2; + license = licenses.gpl2Only; maintainers = with maintainers; [ Anton-Latukha wmertens ]; platforms = with platforms; unix; + broken = stdenv.isDarwin && lib.versionOlder stdenv.hostPlatform.darwinMinVersion "10.13"; }; } diff --git a/pkgs/applications/video/kodi-packages/archive_tool/default.nix b/pkgs/applications/video/kodi-packages/archive_tool/default.nix new file mode 100644 index 000000000000..4788556a8793 --- /dev/null +++ b/pkgs/applications/video/kodi-packages/archive_tool/default.nix @@ -0,0 +1,28 @@ +{ lib, buildKodiAddon, fetchFromGitHub, vfs-libarchive }: +buildKodiAddon rec { + pname = "archive_tool"; + namespace = "script.module.archive_tool"; + version = "2.0.3"; + + src = fetchFromGitHub { + owner = "zach-morris"; + repo = "script.module.archive_tool"; + rev = version; + sha256 = "0hbkyk59xxfjv6vzfjplahmqxi5564qjlwyq6k8ijy6jjcwnd3p7"; + }; + + propagatedBuildInputs = [ + vfs-libarchive + ]; + + passthru = { + pythonPath = "lib"; + }; + + meta = with lib; { + homepage = "https://github.com/zach-morris/script.module.archive_tool"; + description = "A set of common python functions to work with the Kodi archive virtual file system (vfs) binary addons"; + license = licenses.gpl3Plus; + maintainers = teams.kodi.members; + }; +} diff --git a/pkgs/applications/video/kodi-packages/defusedxml/default.nix b/pkgs/applications/video/kodi-packages/defusedxml/default.nix new file mode 100644 index 000000000000..11738065ff60 --- /dev/null +++ b/pkgs/applications/video/kodi-packages/defusedxml/default.nix @@ -0,0 +1,26 @@ +{ lib, buildKodiAddon, fetchzip, addonUpdateScript }: + +buildKodiAddon rec { + pname = "defusedxml"; + namespace = "script.module.defusedxml"; + version = "0.6.0+matrix.1"; + + src = fetchzip { + url = "https://mirrors.kodi.tv/addons/matrix/${namespace}/${namespace}-${version}.zip"; + sha256 = "026i5rx9rmxcc18ixp6qhbryqdl4pn7cbwqicrishivan6apnacd"; + }; + + passthru = { + pythonPath = "lib"; + updateScript = addonUpdateScript { + attrPath = "kodi.packages.defusedxml"; + }; + }; + + meta = with lib; { + homepage = "https://github.com/tiran/defusedxml"; + description = "defusing XML bombs and other exploits"; + license = licenses.psfl; + maintainers = teams.kodi.members; + }; +} diff --git a/pkgs/applications/video/kodi-packages/iagl/default.nix b/pkgs/applications/video/kodi-packages/iagl/default.nix new file mode 100644 index 000000000000..8ca0abdf960b --- /dev/null +++ b/pkgs/applications/video/kodi-packages/iagl/default.nix @@ -0,0 +1,30 @@ +{ lib, buildKodiAddon, fetchFromGitHub, fetchzip, dateutil, requests, routing, vfs-libarchive, archive_tool, youtube }: + +buildKodiAddon rec { + pname = "iagl"; + namespace = "plugin.program.iagl"; + version = "1101521-2"; + + src = fetchFromGitHub { + owner = "zach-morris"; + repo = "plugin.program.iagl"; + rev = "30e82eec1a909b31767f0e298cf77fc970b256d3"; + sha256 = "11y05i5f7lzik23w2kr52jdgr8db3gin8i683sy1hzxlmplk4699"; + }; + + propagatedBuildInputs = [ + dateutil + requests + routing + vfs-libarchive + archive_tool + youtube + ]; + + meta = with lib; { + homepage = "https://github.com/zach-morris/plugin.program.iagl"; + description = "Launch Games from the Internet using Kodi"; + license = licenses.gpl3Plus; + maintainers = teams.kodi.members; + }; +} diff --git a/pkgs/applications/video/kodi-packages/keymap/default.nix b/pkgs/applications/video/kodi-packages/keymap/default.nix new file mode 100644 index 000000000000..d7b45485d683 --- /dev/null +++ b/pkgs/applications/video/kodi-packages/keymap/default.nix @@ -0,0 +1,24 @@ +{ lib, addonDir, buildKodiAddon, fetchzip, defusedxml, kodi-six }: + +buildKodiAddon rec { + pname = "keymap"; + namespace = "script.keymap"; + version = "1.1.3+matrix.1"; + + src = fetchzip { + url = "https://mirrors.kodi.tv/addons/matrix/${namespace}/${namespace}-${version}.zip"; + sha256 = "1icrailzpf60nw62xd0khqdp66dnr473m2aa9wzpmkk3qj1ay6jv"; + }; + + propagatedBuildInputs = [ + defusedxml + kodi-six + ]; + + meta = with lib; { + homepage = "https://github.com/tamland/xbmc-keymap-editor"; + description = "A GUI for configuring mappings for remotes, keyboard and other inputs supported by Kodi"; + license = licenses.gpl3Plus; + maintainers = teams.kodi.members; + }; +} diff --git a/pkgs/applications/video/kodi-packages/libretro-genplus/default.nix b/pkgs/applications/video/kodi-packages/libretro-genplus/default.nix new file mode 100644 index 000000000000..064375107e26 --- /dev/null +++ b/pkgs/applications/video/kodi-packages/libretro-genplus/default.nix @@ -0,0 +1,31 @@ +{ lib, rel, buildKodiBinaryAddon, fetchFromGitHub, libretro, genesis-plus-gx }: + +buildKodiBinaryAddon rec { + pname = "kodi-libretro-genplus"; + namespace = "game.libretro.genplus"; + version = "1.7.4.31"; + + src = fetchFromGitHub { + owner = "kodi-game"; + repo = "game.libretro.genplus"; + rev = "${version}-${rel}"; + sha256 = "0lcii32wzpswjjkwhv250l238g31akr66dhkbv8gj4v1i4z7hry8"; + }; + + extraCMakeFlags = [ + "-DGENPLUS_LIB=${genesis-plus-gx}/lib/retroarch/cores/genesis_plus_gx_libretro.so" + ]; + + extraBuildInputs = [ genesis-plus-gx ]; + propagatedBuildInputs = [ + libretro + ]; + + meta = with lib; { + homepage = "https://github.com/kodi-game/game.libretro.genplus"; + description = "Genesis Plus GX GameClient for Kodi"; + platforms = platforms.all; + license = licenses.gpl2Only; + maintainers = teams.kodi.members; + }; +} diff --git a/pkgs/applications/video/kodi/unwrapped.nix b/pkgs/applications/video/kodi/unwrapped.nix index 7221e668f4e1..5fa652de0c7e 100644 --- a/pkgs/applications/video/kodi/unwrapped.nix +++ b/pkgs/applications/video/kodi/unwrapped.nix @@ -16,7 +16,7 @@ , libcec, libcec_platform, dcadec, libuuid , libcrossguid, libmicrohttpd , bluez, doxygen, giflib, glib, harfbuzz, lcms2, libidn, libpthreadstubs, libtasn1 -, libplist, p11-kit, zlib, flatbuffers, fmt, fstrcmp, rapidjson +, libplist, p11-kit, zlib, flatbuffers, fstrcmp, rapidjson , lirc , x11Support ? true, libX11, xorgproto, libXt, libXmu, libXext, libXinerama, libXrandr, libXtst, libXfixes, xdpyinfo, libXdmcp , dbusSupport ? true, dbus @@ -125,7 +125,7 @@ in stdenv.mkDerivation { libgcrypt libgpg-error libunistring libcrossguid libplist bluez giflib glib harfbuzz lcms2 libpthreadstubs - ffmpeg flatbuffers fmt fstrcmp rapidjson + ffmpeg flatbuffers fstrcmp rapidjson lirc mesa # for libEGL ] diff --git a/pkgs/applications/video/lxdvdrip/default.nix b/pkgs/applications/video/lxdvdrip/default.nix index 6a10aca398cb..60604a4b8abf 100644 --- a/pkgs/applications/video/lxdvdrip/default.nix +++ b/pkgs/applications/video/lxdvdrip/default.nix @@ -1,10 +1,11 @@ { lib, stdenv, fetchurl, libdvdread }: stdenv.mkDerivation rec { - name = "lxdvdrip-1.76"; + pname = "lxdvdrip"; + version = "1.76"; src = fetchurl { - url = "mirror://sourceforge/lxdvdrip/${name}.tgz"; + url = "mirror://sourceforge/lxdvdrip/lxdvdrip-${version}.tgz"; sha256 = "0vgslc7dapfrbgslnaicc8bggdccyrvcgjv1dwi19qswhh7jkzj6"; }; diff --git a/pkgs/applications/video/minitube/default.nix b/pkgs/applications/video/minitube/default.nix index 84b5e2a1d735..62e7e21cbbb3 100644 --- a/pkgs/applications/video/minitube/default.nix +++ b/pkgs/applications/video/minitube/default.nix @@ -6,10 +6,10 @@ mkDerivation rec { pname = "minitube"; - version = "3.8.1"; + version = "3.9.1"; src = fetchFromGitHub { - sha256 = "3lpZyPwo4NnxZJKfmCFsH4WdakV4KB5BtCr5xsleeIQ="; + sha256 = "sha256-1BVHxB7WtXCAJqP+uADszdVPc+T3ctCCzfoJPCb5ZTE="; rev = version; repo = "minitube"; owner = "flaviotordini"; diff --git a/pkgs/applications/video/motion/default.nix b/pkgs/applications/video/motion/default.nix index 53db96e31d4e..c9ea2a51d3d4 100644 --- a/pkgs/applications/video/motion/default.nix +++ b/pkgs/applications/video/motion/default.nix @@ -3,13 +3,13 @@ stdenv.mkDerivation rec { pname = "motion"; - version = "4.3.2"; + version = "4.4.0"; src = fetchFromGitHub { owner = "Motion-Project"; repo = "motion"; rev = "release-${version}"; - sha256 = "09xs815jsivcilpmnrx2jkcxirj4lg5kp99fkr0p2sdxw03myi95"; + sha256 = "sha256-srL9F99HHq5cw82rnQpywkTuY4s6hqIO64Pw5CnaG5Q="; }; nativeBuildInputs = [ autoreconfHook pkg-config ]; diff --git a/pkgs/applications/video/mpv/default.nix b/pkgs/applications/video/mpv/default.nix index 12ca0dfe4cb6..97e707a587e3 100644 --- a/pkgs/applications/video/mpv/default.nix +++ b/pkgs/applications/video/mpv/default.nix @@ -1,7 +1,25 @@ -{ config, lib, stdenv, fetchFromGitHub, fetchpatch -, addOpenGLRunpath, docutils, perl, pkg-config, python3, wafHook, which -, ffmpeg, freefont_ttf, freetype, libass, libpthreadstubs, mujs -, nv-codec-headers, lua, libuchardet, libiconv ? null +{ config +, lib +, stdenv +, fetchFromGitHub +, fetchpatch +, addOpenGLRunpath +, docutils +, perl +, pkg-config +, python3 +, wafHook +, which +, ffmpeg +, freefont_ttf +, freetype +, libass +, libpthreadstubs +, mujs +, nv-codec-headers +, lua +, libuchardet +, libiconv ? null , CoreFoundation, Cocoa, CoreAudio, MediaPlayer , waylandSupport ? stdenv.isLinux @@ -30,7 +48,7 @@ , libdrm ? null , mesa ? null -, alsaSupport ? stdenv.isLinux, alsa-lib ? null +, alsaSupport ? stdenv.isLinux, alsa-lib ? null , archiveSupport ? true, libarchive ? null , bluraySupport ? true, libbluray ? null , bs2bSupport ? true, libbs2b ? null @@ -95,54 +113,22 @@ let in stdenv.mkDerivation rec { pname = "mpv"; - version = "0.33.1"; + version = "0.34.0"; - outputs = [ "out" "dev" ]; + outputs = [ "out" "dev" "man" ]; src = fetchFromGitHub { - owner = "mpv-player"; - repo = "mpv"; - rev = "v${version}"; - sha256 = "06rw1f55zcsj78ql8w70j9ljp2qb1pv594xj7q9cmq7i92a7hq45"; + owner = "mpv-player"; + repo = "mpv"; + rev = "v${version}"; + sha256 = "sha256-qa6xZV4aLcHBMa2bIqoKjte4+KWEGGZre4L0u1+eDE8="; }; - patches = [ - # To make mpv build with libplacebo 3.104.0: - (fetchpatch { # vo_gpu: placebo: update for upstream API changes - url = "https://github.com/mpv-player/mpv/commit/7c4465cefb27d4e0d07535d368febdf77b579566.patch"; - sha256 = "1yfc6220ak5kc5kf7zklmsa944nr9q0qaa27l507pgrmvcyiyzrx"; - }) - # TOREMOVE when > 0.33.1 - # youtube-dl has been abandonned and is now unusable w/ - # youtube.com. Mpv migrated to yt-dlp since the 0.33.1 but did not - # cut a new release yet. See - # https://github.com/mpv-player/mpv/pull/9209 - (fetchpatch { - url = "https://github.com/mpv-player/mpv/commit/d1c92bfd79ef81ac804fcc20aee2ed24e8d587aa.patch"; - sha256 = "1dwxzng3gsrx0gjljm5jmfcjz3pzdss9z2l0n25rmmb4nbcrcx1f"; - }) - ]; - postPatch = '' patchShebangs ./TOOLS/ ''; - - passthru = { - inherit - # The wrapper consults luaEnv and lua.version - luaEnv - lua - # In the wrapper, we want to reference vapoursynth which has the - # `python3` passthru attribute (which has the `sitePrefix` - # attribute). This way we'll be sure that in the wrapper we'll - # use the same python3.sitePrefix used to build vapoursynth. - vapoursynthSupport - vapoursynth - ; - }; - - NIX_LDFLAGS = optionalString x11Support "-lX11 -lXext " - + optionalString stdenv.isDarwin "-framework CoreFoundation"; + NIX_LDFLAGS = lib.optionalString x11Support "-lX11 -lXext " + + lib.optionalString stdenv.isDarwin "-framework CoreFoundation"; wafConfigureFlags = [ "--enable-libmpv-shared" @@ -150,60 +136,71 @@ in stdenv.mkDerivation rec { "--disable-libmpv-static" "--disable-static-build" "--disable-build-date" # Purity - (enableFeature archiveSupport "libarchive") - (enableFeature cddaSupport "cdda") - (enableFeature dvdnavSupport "dvdnav") - (enableFeature openalSupport "openal") - (enableFeature sdl2Support "sdl2") - (enableFeature sixelSupport "sixel") - (enableFeature vaapiSupport "vaapi") - (enableFeature waylandSupport "wayland") - (enableFeature stdenv.isLinux "dvbin") + (lib.enableFeature archiveSupport "libarchive") + (lib.enableFeature cddaSupport "cdda") + (lib.enableFeature dvdnavSupport "dvdnav") + (lib.enableFeature openalSupport "openal") + (lib.enableFeature sdl2Support "sdl2") + (lib.enableFeature sixelSupport "sixel") + (lib.enableFeature vaapiSupport "vaapi") + (lib.enableFeature waylandSupport "wayland") + (lib.enableFeature stdenv.isLinux "dvbin") ] # Disable whilst Swift isn't supported ++ lib.optional (!swiftSupport) "--disable-macos-cocoa-cb"; nativeBuildInputs = [ - addOpenGLRunpath docutils perl pkg-config python3 wafHook which - ] ++ optional swiftSupport swift; + addOpenGLRunpath + docutils + perl + pkg-config + python3 + wafHook + which + ] ++ lib.optionals swiftSupport [ swift ]; buildInputs = [ - ffmpeg freetype libass libpthreadstubs - luaEnv libuchardet mujs - ] ++ optional alsaSupport alsa-lib - ++ optional archiveSupport libarchive - ++ optional bluraySupport libbluray - ++ optional bs2bSupport libbs2b - ++ optional cacaSupport libcaca - ++ optional cmsSupport lcms2 - ++ optional jackaudioSupport libjack2 - ++ optional libpngSupport libpng - ++ optional openalSupport openalSoft - ++ optional pulseSupport libpulseaudio - ++ optional rubberbandSupport rubberband - ++ optional screenSaverSupport libXScrnSaver - ++ optional sdl2Support SDL2 - ++ optional sixelSupport libsixel - ++ optional speexSupport speex - ++ optional theoraSupport libtheora - ++ optional vaapiSupport libva - ++ optional vapoursynthSupport vapoursynth - ++ optional vdpauSupport libvdpau - ++ optional xineramaSupport libXinerama - ++ optional xvSupport libXv - ++ optional zimgSupport zimg - ++ optional stdenv.isDarwin libiconv - ++ optional stdenv.isLinux nv-codec-headers - ++ optionals cddaSupport [ libcdio libcdio-paranoia ] - ++ optionals drmSupport [ libdrm mesa ] - ++ optionals dvdnavSupport [ libdvdnav libdvdnav.libdvdread ] - ++ optionals waylandSupport [ wayland wayland-protocols libxkbcommon ] - ++ optionals x11Support [ libX11 libXext libGLU libGL libXxf86vm libXrandr ] - ++ optionals vulkanSupport [ libplacebo shaderc vulkan-headers vulkan-loader ] - ++ optionals stdenv.isDarwin [ CoreFoundation Cocoa CoreAudio MediaPlayer ]; + ffmpeg + freetype + libass + libpthreadstubs + libuchardet + luaEnv + mujs + ] ++ lib.optionals alsaSupport [ alsa-lib ] + ++ lib.optionals archiveSupport [ libarchive ] + ++ lib.optionals bluraySupport [ libbluray ] + ++ lib.optionals bs2bSupport [ libbs2b ] + ++ lib.optionals cacaSupport [ libcaca ] + ++ lib.optionals cddaSupport [ libcdio libcdio-paranoia ] + ++ lib.optionals cmsSupport [ lcms2 ] + ++ lib.optionals drmSupport [ libdrm mesa ] + ++ lib.optionals dvdnavSupport [ libdvdnav libdvdnav.libdvdread ] + ++ lib.optionals jackaudioSupport [ libjack2 ] + ++ lib.optionals libpngSupport [ libpng ] + ++ lib.optionals openalSupport [ openalSoft ] + ++ lib.optionals pulseSupport [ libpulseaudio ] + ++ lib.optionals rubberbandSupport [ rubberband ] + ++ lib.optionals screenSaverSupport [ libXScrnSaver ] + ++ lib.optionals sdl2Support [ SDL2 ] + ++ lib.optionals sixelSupport [ libsixel ] + ++ lib.optionals speexSupport [ speex ] + ++ lib.optionals theoraSupport [ libtheora ] + ++ lib.optionals vaapiSupport [ libva ] + ++ lib.optionals vapoursynthSupport [ vapoursynth ] + ++ lib.optionals vdpauSupport [ libvdpau ] + ++ lib.optionals vulkanSupport [ libplacebo shaderc vulkan-headers vulkan-loader ] + ++ lib.optionals waylandSupport [ wayland wayland-protocols libxkbcommon ] + ++ lib.optionals x11Support [ libX11 libXext libGLU libGL libXxf86vm libXrandr ] + ++ lib.optionals xineramaSupport [ libXinerama ] + ++ lib.optionals xvSupport [ libXv ] + ++ lib.optionals zimgSupport [ zimg ] + ++ lib.optionals stdenv.isLinux [ nv-codec-headers ] + ++ lib.optionals stdenv.isDarwin [ libiconv ] + ++ lib.optionals stdenv.isDarwin [ CoreFoundation Cocoa CoreAudio MediaPlayer ]; enableParallelBuilding = true; - postBuild = optionalString stdenv.isDarwin '' + postBuild = lib.optionalString stdenv.isDarwin '' python3 TOOLS/osxbundle.py -s build/mpv ''; @@ -219,28 +216,40 @@ in stdenv.mkDerivation rec { substituteInPlace $out/lib/pkgconfig/mpv.pc \ --replace "$out/include" "$dev/include" - '' + optionalString stdenv.isDarwin '' + '' + lib.optionalString stdenv.isDarwin '' mkdir -p $out/Applications cp -r build/mpv.app $out/Applications ''; # Set RUNPATH so that libcuda in /run/opengl-driver(-32)/lib can be found. # See the explanation in addOpenGLRunpath. - postFixup = optionalString stdenv.isLinux '' + postFixup = lib.optionalString stdenv.isLinux '' addOpenGLRunpath $out/bin/mpv ''; meta = with lib; { - description = "A media player that supports many video formats (MPlayer and mplayer2 fork)"; homepage = "https://mpv.io"; + description = "General-purpose media player, fork of MPlayer and mplayer2"; + longDescription = '' + mpv is a free and open-source general-purpose video player, based on the + MPlayer and mplayer2 projects, with great improvements above both. + ''; license = licenses.gpl2Plus; maintainers = with maintainers; [ AndersonTorres fpletz globin ma27 tadeokondrak ]; platforms = platforms.darwin ++ platforms.linux; + }; - longDescription = '' - mpv is a free and open-source general-purpose video player, - based on the MPlayer and mplayer2 projects, with great - improvements above both. - ''; + passthru = { + inherit + # The wrapper consults luaEnv and lua.version + luaEnv + lua + # In the wrapper, we want to reference vapoursynth which has the `python3` + # passthru attribute (which has the `sitePrefix` attribute). This way we'll + # be sure that in the wrapper we'll use the same python3.sitePrefix used to + # build vapoursynth. + vapoursynthSupport + vapoursynth + ; }; } diff --git a/pkgs/applications/video/mpv/wrapper.nix b/pkgs/applications/video/mpv/wrapper.nix index 984623ed7780..6166ae10d4eb 100644 --- a/pkgs/applications/video/mpv/wrapper.nix +++ b/pkgs/applications/video/mpv/wrapper.nix @@ -1,8 +1,8 @@ # Arguments that this derivation gets when it is created with `callPackage` { stdenv , lib -, symlinkJoin , makeWrapper +, symlinkJoin , yt-dlp }: @@ -10,7 +10,7 @@ mpv: let - # arguments to the function (called `wrapMpv` in all-packages.nix) + # arguments to the function (exposed as `wrapMpv` in all-packages.nix) wrapper = { extraMakeWrapperArgs ? [], youtubeSupport ? true, diff --git a/pkgs/applications/video/obs-studio/default.nix b/pkgs/applications/video/obs-studio/default.nix index 85a072547714..31f478c47c0b 100644 --- a/pkgs/applications/video/obs-studio/default.nix +++ b/pkgs/applications/video/obs-studio/default.nix @@ -21,16 +21,14 @@ , curl , wayland , xorg -, makeWrapper , pkg-config , libvlc , mbedtls - +, wrapGAppsHook , scriptingSupport ? true , luajit , swig , python3 - , alsaSupport ? stdenv.isLinux , alsa-lib , pulseaudioSupport ? config.pulseaudio or stdenv.isLinux @@ -68,7 +66,7 @@ mkDerivation rec { addOpenGLRunpath cmake pkg-config - makeWrapper + wrapGAppsHook ] ++ optional scriptingSupport swig; @@ -121,9 +119,13 @@ mkDerivation rec { "-DCEF_ROOT_DIR=../../cef" ]; - qtWrapperArgs = [ - "--prefix LD_LIBRARY_PATH : ${lib.makeLibraryPath [ xorg.libX11 libvlc ]}" - ]; + dontWrapGApps = true; + preFixup = '' + qtWrapperArgs+=( + --prefix LD_LIBRARY_PATH : "${lib.makeLibraryPath [ xorg.libX11 libvlc ]}" + ''${gappsWrapperArgs[@]} + ) + ''; postFixup = lib.optionalString stdenv.isLinux '' addOpenGLRunpath $out/lib/lib*.so diff --git a/pkgs/applications/video/ogmtools/default.nix b/pkgs/applications/video/ogmtools/default.nix index aa0f2404ab80..9f7e08a9ddf4 100644 --- a/pkgs/applications/video/ogmtools/default.nix +++ b/pkgs/applications/video/ogmtools/default.nix @@ -1,14 +1,15 @@ { lib, stdenv, fetchurl, libogg, libvorbis, libdvdread }: stdenv.mkDerivation rec { - name = "ogmtools-1.5"; + pname = "ogmtools"; + version = "1.5"; src = fetchurl { - url = "https://www.bunkus.org/videotools/ogmtools/${name}.tar.bz2"; + url = "https://www.bunkus.org/videotools/ogmtools/ogmtools-${version}.tar.bz2"; sha256 = "1spx81p5wf59ksl3r3gvf78d77sh7gj8a6lw773iv67bphfivmn8"; }; - buildInputs = [libogg libvorbis libdvdread]; + buildInputs = [ libogg libvorbis libdvdread ]; meta = { description = "Tools for modifying and inspecting OGG media streams"; diff --git a/pkgs/applications/video/omxplayer/default.nix b/pkgs/applications/video/omxplayer/default.nix index 3fe3dcf454a1..e01d0a2f49c7 100644 --- a/pkgs/applications/video/omxplayer/default.nix +++ b/pkgs/applications/video/omxplayer/default.nix @@ -1,17 +1,25 @@ -{ lib, stdenv, fetchurl -, raspberrypifw, pcre, boost, freetype, zlib +{ lib +, stdenv +, fetchFromGitHub +, fetchurl +, raspberrypifw +, pcre +, boost +, freetype +, zlib }: let ffmpeg = stdenv.mkDerivation rec { - name = "ffmpeg-1.1.3"; + pname = "ffmpeg"; + version = "1.1.3"; src = fetchurl { - url = "http://www.ffmpeg.org/releases/${name}.tar.bz2"; + url = "http://www.ffmpeg.org/releases/ffmpeg-${version}.tar.bz2"; sha256 = "03s1zsprz5p6gjgwwqcf7b6cvzwwid6l8k7bamx9i0f1iwkgdm0j"; }; - configurePlatforms = []; + configurePlatforms = [ ]; configureFlags = [ "--arch=${stdenv.hostPlatform.parsed.cpu.name}" ] ++ lib.optionals stdenv.hostPlatform.isAarch32 [ @@ -61,26 +69,32 @@ let }; in stdenv.mkDerivation rec { - name = "omxplayer-20130328-fbee325dc2"; - src = fetchurl { - url = "https://github.com/huceke/omxplayer/tarball/fbee325dc2"; - name = "${name}.tar.gz"; + pname = "omxplayer"; + version = "unstable-2013-03-28"; + + src = fetchFromGitHub { + owner = "huceke"; + repo = "omxplayer"; + rev = "fbee325dc20441138d04d8d2022ad85956302e97"; sha256 = "0fkvv8il7ffqxki2gp8cxa5shh6sz9jsy5vv3f4025g4gss6afkg"; }; - patchPhase = '' + + postPatch = '' sed -i 1d Makefile export INCLUDES="-I${raspberrypifw}/include/interface/vcos/pthreads -I${raspberrypifw}/include/interface/vmcs_host/linux/" ''; + installPhase = '' mkdir -p $out/bin cp omxplayer.bin $out/bin ''; + buildInputs = [ raspberrypifw ffmpeg pcre boost freetype zlib ]; - meta = { + meta = with lib; { homepage = "https://github.com/huceke/omxplayer"; description = "Commandline OMX player for the Raspberry Pi"; - license = lib.licenses.gpl2Plus; - platforms = lib.platforms.arm; + license = licenses.gpl2Plus; + platforms = platforms.arm; }; } diff --git a/pkgs/applications/video/openshot-qt/default.nix b/pkgs/applications/video/openshot-qt/default.nix index ac396f4be80a..bb6bfa637cec 100644 --- a/pkgs/applications/video/openshot-qt/default.nix +++ b/pkgs/applications/video/openshot-qt/default.nix @@ -1,7 +1,14 @@ -{ lib, stdenv, mkDerivationWith, fetchFromGitHub, fetchpatch -, doxygen, python3Packages, libopenshot -, wrapGAppsHook, gtk3 -, qtsvg }: +{ lib +, stdenv +, mkDerivationWith +, fetchFromGitHub +, doxygen +, gtk3 +, libopenshot +, python3Packages +, qtsvg +, wrapGAppsHook +}: mkDerivationWith python3Packages.buildPythonApplication rec { pname = "openshot-qt"; @@ -14,11 +21,23 @@ mkDerivationWith python3Packages.buildPythonApplication rec { sha256 = "0pa8iwl217503bjlqg2zlrw5lxyq5hvxrf5apxrh3843hj1w1myv"; }; - nativeBuildInputs = [ doxygen wrapGAppsHook ]; + nativeBuildInputs = [ + doxygen + wrapGAppsHook + ]; - buildInputs = [ gtk3 ]; + buildInputs = [ + gtk3 + ]; - propagatedBuildInputs = with python3Packages; [ libopenshot pyqt5_with_qtwebkit requests sip_4 httplib2 pyzmq ]; + propagatedBuildInputs = with python3Packages; [ + httplib2 + libopenshot + pyqt5_with_qtwebkit + pyzmq + requests + sip_4 + ]; dontWrapGApps = true; dontWrapQtApps = true; @@ -56,4 +75,9 @@ mkDerivationWith python3Packages.buildPythonApplication rec { maintainers = with maintainers; [ AndersonTorres ]; platforms = with platforms; unix; }; + + passthru = { + inherit libopenshot; + inherit (libopenshot) libopenshot-audio; + }; } diff --git a/pkgs/applications/video/openshot-qt/libopenshot-audio.nix b/pkgs/applications/video/openshot-qt/libopenshot-audio.nix index c3bcc09cd3fb..c5a33af44377 100644 --- a/pkgs/applications/video/openshot-qt/libopenshot-audio.nix +++ b/pkgs/applications/video/openshot-qt/libopenshot-audio.nix @@ -1,34 +1,58 @@ -{ lib, stdenv, fetchFromGitHub, pkg-config, cmake, doxygen -, alsa-lib, libX11, libXft, libXrandr, libXinerama, libXext, libXcursor -, zlib, AGL, Cocoa, Foundation +{ lib +, stdenv +, fetchFromGitHub +, alsa-lib +, cmake +, doxygen +, libX11 +, libXcursor +, libXext +, libXft +, libXinerama +, libXrandr +, pkg-config +, zlib +, AGL +, Cocoa +, Foundation }: -with lib; stdenv.mkDerivation rec { pname = "libopenshot-audio"; - version = "0.2.0"; + version = "0.2.2"; src = fetchFromGitHub { owner = "OpenShot"; repo = "libopenshot-audio"; rev = "v${version}"; - sha256 = "13if0m5mvlqly8gmbhschzb9papkgp3yqivklhb949dhy16m8zgf"; + sha256 = "sha256-XtwTZsj/L/sw/28E7Qr5UyghGlBFFXvbmZLGXBB8vg0="; }; - nativeBuildInputs = - [ pkg-config cmake doxygen ]; + nativeBuildInputs = [ + cmake + doxygen + pkg-config + ]; - buildInputs = - optionals stdenv.isLinux [ alsa-lib ] - ++ (if stdenv.isDarwin then - [ zlib AGL Cocoa Foundation ] - else - [ libX11 libXft libXrandr libXinerama libXext libXcursor ]) - ; + buildInputs = lib.optionals stdenv.isLinux [ + alsa-lib + ] ++ (if stdenv.isDarwin then [ + AGL + Cocoa + Foundation + zlib + ] else [ + libX11 + libXcursor + libXext + libXft + libXinerama + libXrandr + ]); doCheck = false; - meta = { + meta = with lib; { homepage = "http://openshot.org/"; description = "High-quality sound editing library"; longDescription = '' diff --git a/pkgs/applications/video/openshot-qt/libopenshot.nix b/pkgs/applications/video/openshot-qt/libopenshot.nix index 246c3d5cab86..8a98010ef642 100644 --- a/pkgs/applications/video/openshot-qt/libopenshot.nix +++ b/pkgs/applications/video/openshot-qt/libopenshot.nix @@ -1,56 +1,69 @@ -{ lib, stdenv, fetchFromGitHub, fetchpatch -, pkg-config, cmake, doxygen -, libopenshot-audio, imagemagick, ffmpeg -, swig, python3, jsoncpp -, cppzmq, zeromq -, qtbase, qtmultimedia +{ lib +, stdenv +, fetchFromGitHub +, alsa-lib +, cmake +, cppzmq +, doxygen +, ffmpeg +, imagemagick +, jsoncpp +, libopenshot-audio , llvmPackages +, pkg-config +, python3 +, qtbase +, qtmultimedia +, swig +, zeromq }: -with lib; stdenv.mkDerivation rec { pname = "libopenshot"; - version = "0.2.5"; + version = "0.2.7"; src = fetchFromGitHub { owner = "OpenShot"; repo = "libopenshot"; rev = "v${version}"; - sha256 = "1mxjkgjmjzgf628y3rscc6rqf55hxgjpmvwxlncfk1216i5xskwp"; + sha256 = "sha256-aF8wrPxFIjCy5gw72e/WyL/Wcx9tUGDkrqHS+ZDVK0U="; }; - patches = [ - # Fix build with GCC 10. - (fetchpatch { - name = "fix-build-with-gcc-10.patch"; - url = "https://github.com/OpenShot/libopenshot/commit/13290364e7bea54164ab83d973951f2898ad9e23.diff"; - sha256 = "0i7rpdsr8y9dphil8yq75qbh20vfqjc2hp5ahv0ws58z9wj6ngnz"; - }) - ]; - postPatch = '' sed -i 's/{UNITTEST++_INCLUDE_DIR}/ENV{UNITTEST++_INCLUDE_DIR}/g' tests/CMakeLists.txt - sed -i 's/{_REL_PYTHON_MODULE_PATH}/ENV{_REL_PYTHON_MODULE_PATH}/g' src/bindings/python/CMakeLists.txt + sed -i 's/{_REL_PYTHON_MODULE_PATH}/ENV{_REL_PYTHON_MODULE_PATH}/g' bindings/python/CMakeLists.txt export _REL_PYTHON_MODULE_PATH=$(toPythonPath $out) ''; - nativeBuildInputs = [ pkg-config cmake doxygen swig ]; + nativeBuildInputs = [ + alsa-lib + cmake + doxygen + pkg-config + swig + ]; - buildInputs = - [ imagemagick ffmpeg python3 jsoncpp - cppzmq zeromq qtbase qtmultimedia ] - ++ optional stdenv.isDarwin llvmPackages.openmp - ; + buildInputs = [ + cppzmq + ffmpeg + imagemagick + jsoncpp + libopenshot-audio + python3 + qtbase + qtmultimedia + zeromq + ] ++ lib.optionals stdenv.isDarwin [ + llvmPackages.openmp + ]; dontWrapQtApps = true; - LIBOPENSHOT_AUDIO_DIR = libopenshot-audio; - doCheck = false; cmakeFlags = [ "-DENABLE_RUBY=OFF" ]; - meta = { + meta = with lib; { homepage = "http://openshot.org/"; description = "Free, open-source video editor library"; longDescription = '' @@ -58,8 +71,12 @@ stdenv.mkDerivation rec { delivering high quality video editing, animation, and playback solutions to the world. API currently supports C++, Python, and Ruby. ''; - license = with licenses; gpl3Plus; + license = licenses.gpl3Plus; maintainers = with maintainers; [ AndersonTorres ]; - platforms = with platforms; unix; + platforms = platforms.unix; + }; + + passthru = { + inherit libopenshot-audio; }; } diff --git a/pkgs/applications/video/smplayer/default.nix b/pkgs/applications/video/smplayer/default.nix index 007ef4262ef2..6d4e0f18d6fb 100644 --- a/pkgs/applications/video/smplayer/default.nix +++ b/pkgs/applications/video/smplayer/default.nix @@ -1,6 +1,6 @@ { lib , stdenv -, fetchurl +, fetchFromGitHub , qmake , qtscript , wrapQtAppsHook @@ -8,14 +8,20 @@ stdenv.mkDerivation rec { pname = "smplayer"; - version = "21.1.0"; + version = "21.10.0"; - src = fetchurl { - url = "mirror://sourceforge/${pname}/${pname}-${version}.tar.bz2"; - hash = "sha256-Y0uq32XoQ8fpIJDScRfA7p3RYd6x1PWZSsYyAYYKf/c="; + src = fetchFromGitHub { + owner = "smplayer-dev"; + repo = pname; + rev = "v${version}"; + hash = "sha256-p6036c8KX3GCINmkjHZlDLgHhLKri+t2WNWzP4KsSI8="; }; - nativeBuildInputs = [ qmake wrapQtAppsHook ]; + nativeBuildInputs = [ + qmake + wrapQtAppsHook + ]; + buildInputs = [ qtscript ]; dontUseQmakeConfigure = true; diff --git a/pkgs/applications/video/subdl/default.nix b/pkgs/applications/video/subdl/default.nix index e115fbcdd04d..95f7be2cbcaf 100644 --- a/pkgs/applications/video/subdl/default.nix +++ b/pkgs/applications/video/subdl/default.nix @@ -1,7 +1,8 @@ { lib, stdenv, fetchFromGitHub, python3 }: stdenv.mkDerivation { - name = "subdl-0.0pre.2017.11.06"; + pname = "subdl"; + version = "unstable-2017-11.06"; src = fetchFromGitHub { owner = "alexanderwink"; @@ -10,6 +11,12 @@ stdenv.mkDerivation { sha256 = "0kmk5ck1j49q4ww0lvas2767kwnzhkq0vdwkmjypdx5zkxz73fn8"; }; + buildInputs = [ python3 ]; + + installPhase = '' + install -vD subdl $out/bin/subdl + ''; + meta = { homepage = "https://github.com/alexanderwink/subdl"; description = "A command-line tool to download subtitles from opensubtitles.org"; @@ -17,10 +24,4 @@ stdenv.mkDerivation { license = lib.licenses.gpl3; maintainers = [ lib.maintainers.exfalso ]; }; - - buildInputs = [ python3 ]; - - installPhase = '' - install -vD subdl $out/bin/subdl - ''; } diff --git a/pkgs/applications/video/uvccapture/default.nix b/pkgs/applications/video/uvccapture/default.nix index 70c3baa0b811..be0a7fcd2416 100644 --- a/pkgs/applications/video/uvccapture/default.nix +++ b/pkgs/applications/video/uvccapture/default.nix @@ -8,11 +8,12 @@ let in -stdenv.mkDerivation { - name = "uvccapture-0.5"; +stdenv.mkDerivation rec { + pname = "uvccapture"; + version = "0.5"; src = fetchurl { - url = "mirror://debian/pool/main/u/uvccapture/uvccapture_0.5.orig.tar.gz"; + url = "mirror://debian/pool/main/u/uvccapture/uvccapture_${version}.orig.tar.gz"; sha256 = "1b3akkcmr3brbf93akr8xi20w8zqf2g0qfq928500wy04qi6jqpi"; }; diff --git a/pkgs/applications/video/vdr/plugins.nix b/pkgs/applications/video/vdr/plugins.nix index d694ad8004e0..96b3733b02d6 100644 --- a/pkgs/applications/video/vdr/plugins.nix +++ b/pkgs/applications/video/vdr/plugins.nix @@ -1,5 +1,5 @@ { lib, stdenv, fetchurl, fetchgit, vdr, alsa-lib, fetchFromGitHub -, libvdpau, libxcb, xcbutilwm, graphicsmagick, libav, pcre, xorgserver, ffmpeg_3 +, libvdpau, libxcb, xcbutilwm, graphicsmagick, libav, pcre, xorgserver, ffmpeg , libiconv, boost, libgcrypt, perl, util-linux, groff, libva, xorg, ncurses , callPackage }: let @@ -52,7 +52,7 @@ in { version = "20190525"; buildInputs = [ - vdr libxcb xcbutilwm ffmpeg_3 + vdr libxcb xcbutilwm ffmpeg alsa-lib libvdpau # vdpau libva # va-api diff --git a/pkgs/applications/video/xawtv/default.nix b/pkgs/applications/video/xawtv/default.nix index b046fbebaa26..d52feb8a66b0 100644 --- a/pkgs/applications/video/xawtv/default.nix +++ b/pkgs/applications/video/xawtv/default.nix @@ -1,4 +1,5 @@ -{ lib, stdenv +{ lib +, stdenv , fetchurl , ncurses , libjpeg @@ -19,10 +20,11 @@ }: stdenv.mkDerivation rec { - name = "xawtv-3.107"; + pname = "xawtv"; + version = "3.107"; src = fetchurl { - url = "https://linuxtv.org/downloads/xawtv/${name}.tar.bz2"; + url = "https://linuxtv.org/downloads/xawtv/xawtv-${version}.tar.bz2"; sha256 = "055p0wia0xsj073l8mg4ifa6m81dmv6p45qyh99brramq5iylfy5"; }; diff --git a/pkgs/applications/video/xvidcap/default.nix b/pkgs/applications/video/xvidcap/default.nix index e0cca0409878..06dc6bb465cc 100644 --- a/pkgs/applications/video/xvidcap/default.nix +++ b/pkgs/applications/video/xvidcap/default.nix @@ -1,12 +1,26 @@ -{ lib, stdenv, fetchurl, perlPackages, pkg-config, gtk2 -, scrollkeeper, libglade, libXmu, libX11, libXext, gettext -, lame, libXfixes, libXdamage }: +{ lib +, stdenv +, fetchurl +, perlPackages +, pkg-config +, gtk2 +, scrollkeeper +, libglade +, libXmu +, libX11 +, libXext +, gettext +, lame +, libXfixes +, libXdamage +}: -stdenv.mkDerivation { - name = "xvidcap-1.1.7"; +stdenv.mkDerivation rec { + pname = "xvidcap"; + version = "1.1.7"; src = fetchurl { - url = "mirror://sourceforge/xvidcap/xvidcap-1.1.7.tar.gz"; + url = "mirror://sourceforge/xvidcap/xvidcap-${version}.tar.gz"; sha256 = "0p8rhpyhxgy37crf1xk1046z4p663jg7ww776jw92pld3s024ihm"; }; @@ -14,8 +28,16 @@ stdenv.mkDerivation { nativeBuildInputs = [ pkg-config ]; buildInputs = [ - gtk2 scrollkeeper - libglade libXmu gettext lame libXdamage libXfixes libXext libX11 + gtk2 + scrollkeeper + libglade + libXmu + gettext + lame + libXdamage + libXfixes + libXext + libX11 ] ++ (with perlPackages; [ perl XMLParser ]); # !!! don't know why this is necessary @@ -24,7 +46,7 @@ stdenv.mkDerivation { meta = with lib; { description = "Screencast video catpuring tool"; homepage = "http://xvidcap.sourceforge.net/"; - license = lib.licenses.gpl2; + license = licenses.gpl2; platforms = platforms.linux; }; } diff --git a/pkgs/applications/virtualization/OVMF/default.nix b/pkgs/applications/virtualization/OVMF/default.nix index 54378dbe13d3..7adcd328add7 100644 --- a/pkgs/applications/virtualization/OVMF/default.nix +++ b/pkgs/applications/virtualization/OVMF/default.nix @@ -31,7 +31,7 @@ edk2.mkDerivation projectDscPath { hardeningDisable = [ "format" "stackprotector" "pic" "fortify" ]; buildFlags = - lib.optional secureBoot "-D SECURE_BOOT_ENABLE=TRUE" + lib.optionals secureBoot [ "-D SECURE_BOOT_ENABLE=TRUE" ] ++ lib.optionals csmSupport [ "-D CSM_ENABLE" "-D FD_SIZE_2MB" ] ++ lib.optionals httpSupport [ "-D NETWORK_HTTP_ENABLE=TRUE" "-D NETWORK_HTTP_BOOT_ENABLE=TRUE" ] ++ lib.optionals tpmSupport [ "-D TPM_ENABLE" "-D TPM2_ENABLE" "-D TPM2_CONFIG_ENABLE"]; diff --git a/pkgs/applications/virtualization/arion/default.nix b/pkgs/applications/virtualization/arion/default.nix index f144ec976779..33b2b000cbfc 100644 --- a/pkgs/applications/virtualization/arion/default.nix +++ b/pkgs/applications/virtualization/arion/default.nix @@ -18,11 +18,11 @@ let arion = justStaticExecutables ( overrideCabal - arion-compose cabalOverrides + arion-compose ); - inherit (haskell.lib) justStaticExecutables overrideCabal; + inherit (haskell.lib.compose) justStaticExecutables overrideCabal; inherit (haskellPackages) arion-compose; diff --git a/pkgs/applications/virtualization/catatonit/default.nix b/pkgs/applications/virtualization/catatonit/default.nix index e311be68ab8c..e059a254cb97 100644 --- a/pkgs/applications/virtualization/catatonit/default.nix +++ b/pkgs/applications/virtualization/catatonit/default.nix @@ -1,16 +1,26 @@ -{ lib, stdenv, fetchFromGitHub, autoreconfHook, glibc, nixosTests }: +{ lib, stdenv, fetchFromGitHub, fetchpatch, autoreconfHook, glibc, nixosTests }: stdenv.mkDerivation rec { pname = "catatonit"; - version = "0.1.6"; + version = "0.1.7"; src = fetchFromGitHub { owner = "openSUSE"; repo = pname; rev = "v${version}"; - sha256 = "sha256-hokG6o7toZxU984EvIlne33Aa2EZVZ3qu1jTZMm5nt4="; + sha256 = "sha256-jX4fYC/rpfd3ro2UZ6OEu4kU5wpusOwmEVPWEjxwlW4="; }; + patches = [ + # Pull the fix pending upstream inclusion to support automake-1.16.5: + # https://github.com/openSUSE/catatonit/pull/18 + (fetchpatch { + name = "automake-1.16.5.patch"; + url = "https://github.com/openSUSE/catatonit/commit/99bb9048f532257f3a2c3856cfa19fe957ab6cec.patch"; + sha256 = "sha256-ooxVjtWXJddQiBvO9I5aRyLeL8y3ecxW/Kvtfg/bpRA="; + }) + ]; + nativeBuildInputs = [ autoreconfHook ]; buildInputs = lib.optionals (!stdenv.hostPlatform.isMusl) [ glibc glibc.static ]; diff --git a/pkgs/applications/virtualization/crun/default.nix b/pkgs/applications/virtualization/crun/default.nix index c91bf3d142ab..2f09c3a29c77 100644 --- a/pkgs/applications/virtualization/crun/default.nix +++ b/pkgs/applications/virtualization/crun/default.nix @@ -37,13 +37,13 @@ let in stdenv.mkDerivation rec { pname = "crun"; - version = "1.2"; + version = "1.3"; src = fetchFromGitHub { owner = "containers"; repo = pname; rev = version; - sha256 = "sha256-7YDU7H4dVT6qI+Gt3bkm7vqHlU0Fr7ZhF4SWcA+RhYw="; + sha256 = "sha256-c0jXhqYdEpt4De1Z6VNwyrv0KJcf039Wp3ye0oTW0Qc="; fetchSubmodules = true; }; diff --git a/pkgs/applications/virtualization/docker-slim/default.nix b/pkgs/applications/virtualization/docker-slim/default.nix index 277c06438f53..ebfaac0bde1f 100644 --- a/pkgs/applications/virtualization/docker-slim/default.nix +++ b/pkgs/applications/virtualization/docker-slim/default.nix @@ -6,7 +6,7 @@ buildGoPackage rec { pname = "docker-slim"; - version = "1.37.0"; + version = "1.37.2"; goPackagePath = "github.com/docker-slim/docker-slim"; @@ -14,7 +14,7 @@ buildGoPackage rec { owner = "docker-slim"; repo = "docker-slim"; rev = version; - sha256 = "1gxbgn61qv4zhzxwdd917hywwicr3jand34ghjzha35r44lmyzgz"; + sha256 = "1svhi9xf71zrk843bnwkpmq4iaaln07dpfrdvq0vdqhj5xvbx47g"; }; subPackages = [ "cmd/docker-slim" "cmd/docker-slim-sensor" ]; diff --git a/pkgs/applications/virtualization/driver/win-pvdrivers/default.nix b/pkgs/applications/virtualization/driver/win-pvdrivers/default.nix index cf6395c8a53b..75cf99caf861 100644 --- a/pkgs/applications/virtualization/driver/win-pvdrivers/default.nix +++ b/pkgs/applications/virtualization/driver/win-pvdrivers/default.nix @@ -1,29 +1,30 @@ -{ lib, stdenv, fetchgit }: +{ lib, stdenv, fetchFromGitHub }: -stdenv.mkDerivation { - name = "win-pvdrivers-git-20150701"; - version = "20150701"; +stdenv.mkDerivation { + pname = "win-pvdrivers"; + version = "unstable-2015-07-01"; - src = fetchgit { - url = "https://github.com/ts468/win-pvdrivers"; + src = fetchFromGitHub { + owner = "ts468"; + repo = "win-pvdrivers"; rev = "3054d645fc3ee182bea3e97ff01869f01cc3637a"; sha256 = "6232ca2b7c9af874abbcb9262faf2c74c819727ed2eb64599c790879df535106"; }; buildPhase = let unpack = x: "tar xf $src/${x}.tar; mkdir -p x86/${x} amd64/${x}; cp ${x}/x86/* x86/${x}/.; cp ${x}/x64/* amd64/${x}/."; - in lib.concatStringsSep "\n" (map unpack ["xenbus" "xeniface" "xenvif" "xennet" "xenvbd"]); + in lib.concatStringsSep "\n" (map unpack [ "xenbus" "xeniface" "xenvif" "xennet" "xenvbd" ]); installPhase = '' mkdir -p $out cp -r x86 $out/. cp -r amd64 $out/. - ''; + ''; meta = with lib; { description = "Xen Subproject: Windows PV Driver"; homepage = "http://xenproject.org/downloads/windows-pv-drivers.html"; - maintainers = [ maintainers.tstrobel ]; + maintainers = with maintainers; [ tstrobel ]; platforms = platforms.linux; license = licenses.bsd3; }; diff --git a/pkgs/applications/virtualization/driver/win-qemu/default.nix b/pkgs/applications/virtualization/driver/win-qemu/default.nix index 7c1eb0055a30..a4cd8dacc449 100644 --- a/pkgs/applications/virtualization/driver/win-qemu/default.nix +++ b/pkgs/applications/virtualization/driver/win-qemu/default.nix @@ -1,19 +1,19 @@ { lib, stdenv, fetchurl, p7zip }: -stdenv.mkDerivation { - name = "win-qemu-0.1.105-1"; +stdenv.mkDerivation rec { + pname = "win-qemu"; version = "0.1.105-1"; dontUnpack = true; src = fetchurl { - url = "https://fedorapeople.org/groups/virt/virtio-win/direct-downloads/archive-virtio/virtio-win-0.1.105-1/virtio-win.iso"; + url = "https://fedorapeople.org/groups/virt/virtio-win/direct-downloads/archive-virtio/virtio-win-${version}/virtio-win.iso"; sha256 = "065gz7s77y0q9kfqbr27451sr28rm9azpi88sqjkfph8c6r8q3wc"; }; buildPhase = '' ${p7zip}/bin/7z x $src - ''; + ''; installPhase = let @@ -23,10 +23,10 @@ stdenv.mkDerivation { mkdir -p $out/${arch}/qemuagent cp guest-agent/${if arch=="x86" then "qemu-ga-x86.msi" else "qemu-ga-x64.msi"} $out/${arch}/qemuagent/qemu-guest-agent.msi (cd $out/${arch}/qemuagent; ${p7zip}/bin/7z x qemu-guest-agent.msi; rm qemu-guest-agent.msi) - ''; + ''; copy = arch: version: (copy_pvpanic arch version) + (copy_pciserial arch) + (copy_agent arch); in - (copy "amd64" "w8.1") + (copy "x86" "w8.1"); + (copy "amd64" "w8.1") + (copy "x86" "w8.1"); meta = with lib; { description = "Windows QEMU Drivers"; diff --git a/pkgs/applications/virtualization/driver/win-signed-gplpv-drivers/default.nix b/pkgs/applications/virtualization/driver/win-signed-gplpv-drivers/default.nix index e9ad3b863386..ef8ec062e4d8 100644 --- a/pkgs/applications/virtualization/driver/win-signed-gplpv-drivers/default.nix +++ b/pkgs/applications/virtualization/driver/win-signed-gplpv-drivers/default.nix @@ -12,8 +12,8 @@ let }; in -stdenv.mkDerivation { - name = "gplpv-0.11.0.373"; +stdenv.mkDerivation { + pname = "gplpv"; version = "0.11.0.373"; dontUnpack = true; @@ -23,13 +23,13 @@ stdenv.mkDerivation { (cd x86; ${p7zip}/bin/7z e ${src_x86}) mkdir -p amd64 (cd amd64; ${p7zip}/bin/7z e ${src_amd64}) - ''; + ''; installPhase = '' mkdir -p $out/x86 $out/amd64 cp x86/* $out/x86/. cp amd64/* $out/amd64/. - ''; + ''; meta = with lib; { description = '' @@ -37,7 +37,7 @@ stdenv.mkDerivation { Windows to be para-virtualized. The drivers are signed by Univention with a Software Publishers Certificate obtained from the VeriSign CA. - ''; + ''; homepage = "http://wiki.univention.de/index.php?title=Installing-signed-GPLPV-drivers"; maintainers = [ maintainers.tstrobel ]; platforms = platforms.linux; diff --git a/pkgs/applications/virtualization/lima/default.nix b/pkgs/applications/virtualization/lima/default.nix index 9b6c412fa211..cb45f5b7a827 100644 --- a/pkgs/applications/virtualization/lima/default.nix +++ b/pkgs/applications/virtualization/lima/default.nix @@ -8,16 +8,16 @@ buildGoModule rec { pname = "lima"; - version = "0.7.2"; + version = "0.7.3"; src = fetchFromGitHub { owner = "lima-vm"; repo = pname; rev = "v${version}"; - sha256 = "sha256-XJZg3uX++gU65bO1uqJblXXcVPzFXROCWFTn/gfkea0="; + sha256 = "sha256-HVWZ0XF1oBUHhkOQHELlZ/pxXUsUo2cVo6EhZl6S0W4="; }; - vendorSha256 = "sha256-+fx/Iy78gmhxRjXPkHYdixpaMkOwEANUsZA+KSdQkWU="; + vendorSha256 = "sha256-LhmZRa7vDylA4DRTfKFRs3lQMnwNfzF1H6ki1/zdpUg="; nativeBuildInputs = [ makeWrapper installShellFiles ]; diff --git a/pkgs/applications/virtualization/qboot/default.nix b/pkgs/applications/virtualization/qboot/default.nix index 8ac00d1f8e15..c7a3620d644e 100644 --- a/pkgs/applications/virtualization/qboot/default.nix +++ b/pkgs/applications/virtualization/qboot/default.nix @@ -1,7 +1,8 @@ { lib, stdenv, meson, ninja, fetchFromGitHub, nixosTests }: stdenv.mkDerivation { - name = "qboot-20200423"; + pname = "qboot"; + version = "unstable-2020-04-23"; src = fetchFromGitHub { owner = "bonzini"; @@ -26,6 +27,6 @@ stdenv.mkDerivation { homepage = "https://github.com/bonzini/qboot"; license = lib.licenses.gpl2; maintainers = with lib.maintainers; [ tstrobel ]; - platforms = ["x86_64-linux" "i686-linux"]; + platforms = [ "x86_64-linux" "i686-linux" ]; }; } diff --git a/pkgs/applications/virtualization/qemu/default.nix b/pkgs/applications/virtualization/qemu/default.nix index 4e0f459ac287..477b1603d27d 100644 --- a/pkgs/applications/virtualization/qemu/default.nix +++ b/pkgs/applications/virtualization/qemu/default.nix @@ -97,12 +97,21 @@ stdenv.mkDerivation rec { url = "https://gitlab.com/qemu-project/qemu/-/commit/13b250b12ad3c59114a6a17d59caf073ce45b33a.patch"; sha256 = "0lkzfc7gdlvj4rz9wk07fskidaqysmx8911g914ds1jnczgk71mf"; }) + # Fixes a crash that frequently happens in some setups that share /nix/store over 9p like nixos tests + # on some systems. Remove with next release. + (fetchpatch { + name = "fix-crash-in-v9fs_walk.patch"; + url = "https://gitlab.com/qemu-project/qemu/-/commit/f83df00900816476cca41bb536e4d532b297d76e.patch"; + sha256 = "sha256-LYGbBLS5YVgq8Bf7NVk7HBFxXq34NmZRPCEG79JPwk8="; + }) + # Fixes an io error on discard/unmap operation for aio/file backend. Remove with next release. + (fetchpatch { + name = "fix-aio-discard-return-value.patch"; + url = "https://gitlab.com/qemu-project/qemu/-/commit/13a028336f2c05e7ff47dfdaf30dfac7f4883e80.patch"; + sha256 = "sha256-23xVixVl+JDBNdhe5j5WY8CB4MsnUo+sjrkAkG+JS6M="; + }) ] ++ lib.optional nixosTestRunner ./force-uid0-on-9p.patch ++ lib.optionals stdenv.hostPlatform.isMusl [ - (fetchpatch { - url = "https://raw.githubusercontent.com/alpinelinux/aports/2bb133986e8fa90e2e76d53369f03861a87a74ef/main/qemu/musl-F_SHLCK-and-F_EXLCK.patch"; - sha256 = "1gm67v41gw6apzgz7jr3zv9z80wvkv0jaxd2w4d16hmipa8bhs0k"; - }) ./sigrtminmax.patch (fetchpatch { url = "https://raw.githubusercontent.com/alpinelinux/aports/2bb133986e8fa90e2e76d53369f03861a87a74ef/main/qemu/fix-sigevent-and-sigval_t.patch"; diff --git a/pkgs/applications/virtualization/singularity/default.nix b/pkgs/applications/virtualization/singularity/default.nix index 37fad321cada..e8d78c5bb4a1 100644 --- a/pkgs/applications/virtualization/singularity/default.nix +++ b/pkgs/applications/virtualization/singularity/default.nix @@ -15,11 +15,11 @@ with lib; buildGoPackage rec { pname = "singularity"; - version = "3.8.3"; + version = "3.8.4"; src = fetchurl { url = "https://github.com/hpcng/singularity/releases/download/v${version}/singularity-${version}.tar.gz"; - sha256 = "sha256-LiLrnuG3P91RuHgxSfDk2DwNLYoMHt9gNBV9UO7vuDU="; + sha256 = "sha256-y5Xm1osNIPK4fWDyOjv3B7fT6HzuDdSqQ4D49IGlfrw="; }; goPackagePath = "github.com/sylabs/singularity"; diff --git a/pkgs/applications/virtualization/virtualbox/default.nix b/pkgs/applications/virtualization/virtualbox/default.nix index 98c7f80df8ad..128753f26433 100644 --- a/pkgs/applications/virtualization/virtualbox/default.nix +++ b/pkgs/applications/virtualization/virtualbox/default.nix @@ -2,24 +2,24 @@ , libX11, xorgproto, libXext, libXcursor, libXmu, libIDL, SDL, libcap, libGL , libpng, glib, lvm2, libXrandr, libXinerama, libopus, qtbase, qtx11extras , qttools, qtsvg, qtwayland, pkg-config, which, docbook_xsl, docbook_xml_dtd_43 -, alsa-lib, curl, libvpx, nettools, dbus, substituteAll +, alsa-lib, curl, libvpx, nettools, dbus, substituteAll, gsoap, zlib # If open-watcom-bin is not passed, VirtualBox will fall back to use # the shipped alternative sources (assembly). -, open-watcom-bin ? null +, open-watcom-bin , makeself, perl -, javaBindings ? true, jdk ? null # Almost doesn't affect closure size -, pythonBindings ? false, python3 ? null -, extensionPack ? null, fakeroot ? null -, pulseSupport ? config.pulseaudio or stdenv.isLinux, libpulseaudio ? null +, javaBindings ? true, jdk # Almost doesn't affect closure size +, pythonBindings ? false, python3 +, extensionPack ? null, fakeroot +, pulseSupport ? config.pulseaudio or stdenv.isLinux, libpulseaudio , enableHardening ? false , headless ? false , enable32bitGuests ? true +, enableWebService ? false }: with lib; let - python = python3; buildType = "release"; # Use maintainers/scripts/update.nix to update the version and all related hashes or # change the hashes in extpack.nix and guest-additions/default.nix as well manually. @@ -41,22 +41,23 @@ in stdenv.mkDerivation { # Wrap manually because we wrap just a small number of executables. dontWrapQtApps = true; - buildInputs = - [ acpica-tools dev86 libxslt libxml2 xorgproto libX11 libXext libXcursor libIDL - libcap glib lvm2 alsa-lib curl libvpx pam makeself perl - libXmu libpng libopus python ] + buildInputs = [ + acpica-tools dev86 libxslt libxml2 xorgproto libX11 libXext libXcursor libIDL + libcap glib lvm2 alsa-lib curl libvpx pam makeself perl + libXmu libpng libopus python3 ] ++ optional javaBindings jdk - ++ optional pythonBindings python # Python is needed even when not building bindings + ++ optional pythonBindings python3 # Python is needed even when not building bindings ++ optional pulseSupport libpulseaudio - ++ optionals (headless) [ libXrandr libGL ] - ++ optionals (!headless) [ qtbase qtx11extras libXinerama SDL ]; + ++ optionals headless [ libXrandr libGL ] + ++ optionals (!headless) [ qtbase qtx11extras libXinerama SDL ] + ++ optionals enableWebService [ gsoap zlib ]; hardeningDisable = [ "format" "fortify" "pic" "stackprotector" ]; prePatch = '' set -x sed -e 's@MKISOFS --version@MKISOFS -version@' \ - -e 's@PYTHONDIR=.*@PYTHONDIR=${if pythonBindings then python else ""}@' \ + -e 's@PYTHONDIR=.*@PYTHONDIR=${lib.optionalString pythonBindings python3}@' \ -e 's@CXX_FLAGS="\(.*\)"@CXX_FLAGS="-std=c++11 \1"@' \ ${optionalString (!headless) '' -e 's@TOOLQT5BIN=.*@TOOLQT5BIN="${getDev qtbase}/bin"@' \ @@ -133,6 +134,10 @@ in stdenv.mkDerivation { PATH_QT5_X11_EXTRAS_INC := ${getDev qtx11extras}/include TOOL_QT5_LRC := ${getDev qttools}/bin/lrelease ''} + ${optionalString enableWebService '' + # fix gsoap missing zlib include and produce errors with --as-needed + VBOX_GSOAP_CXX_LIBS := gsoapssl++ z + ''} LOCAL_CONFIG ./configure \ @@ -142,6 +147,7 @@ in stdenv.mkDerivation { ${optionalString (!pulseSupport) "--disable-pulse"} \ ${optionalString (!enableHardening) "--disable-hardening"} \ ${optionalString (!enable32bitGuests) "--disable-vmmraw"} \ + ${optionalString enableWebService "--enable-webservice"} \ ${optionalString (open-watcom-bin != null) "--with-ow-dir=${open-watcom-bin}"} \ --disable-kmods sed -e 's@PKG_CONFIG_PATH=.*@PKG_CONFIG_PATH=${libIDL}/lib/pkgconfig:${glib.dev}/lib/pkgconfig ${libIDL}/bin/libIDL-config-2@' \ @@ -168,7 +174,7 @@ in stdenv.mkDerivation { -name src -o -exec cp -avt "$libexec" {} + mkdir -p $out/bin - for file in ${optionalString (!headless) "VirtualBox VBoxSDL rdesktop-vrdp"} VBoxManage VBoxBalloonCtrl VBoxHeadless; do + for file in ${optionalString (!headless) "VirtualBox VBoxSDL rdesktop-vrdp"} ${optionalString enableWebService "vboxwebsrv"} VBoxManage VBoxBalloonCtrl VBoxHeadless; do echo "Linking $file to /bin" test -x "$libexec/$file" ln -s "$libexec/$file" $out/bin/$file @@ -176,14 +182,14 @@ in stdenv.mkDerivation { ${optionalString (extensionPack != null) '' mkdir -p "$share" - "${fakeroot}/bin/fakeroot" "${stdenv.shell}" <<EXTHELPER + "${fakeroot}/bin/fakeroot" "${stdenv.shell}" <<EOF "$libexec/VBoxExtPackHelperApp" install \ --base-dir "$share/ExtensionPacks" \ --cert-dir "$share/ExtPackCertificates" \ --name "Oracle VM VirtualBox Extension Pack" \ --tarball "${extensionPack}" \ --sha-256 "${extensionPack.outputHash}" - EXTHELPER + EOF ''} ${optionalString (!headless) '' diff --git a/pkgs/applications/window-managers/dzen2/default.nix b/pkgs/applications/window-managers/dzen2/default.nix index 84380bfc9d86..df7521cd2c41 100644 --- a/pkgs/applications/window-managers/dzen2/default.nix +++ b/pkgs/applications/window-managers/dzen2/default.nix @@ -1,13 +1,14 @@ { lib, stdenv, fetchurl, pkg-config, libX11, libXft, libXinerama, libXpm }: -stdenv.mkDerivation { - name = "dzen2-0.9.5"; +stdenv.mkDerivation rec { + pname = "dzen2"; + version = "0.9.5"; nativeBuildInputs = [ pkg-config ]; buildInputs = [ libX11 libXft libXinerama libXpm ]; src = fetchurl { - url = "https://github.com/robm/dzen/tarball/master/dzen2-0.9.5git.tar.gz"; + url = "https://github.com/robm/dzen/tarball/master/dzen2-${version}git.tar.gz"; sha256 = "d4f7943cd39dc23fd825eb684b49dc3484860fa8443d30b06ee38af72a53b556"; }; diff --git a/pkgs/applications/window-managers/evilwm/default.nix b/pkgs/applications/window-managers/evilwm/default.nix index 94562cd0d224..0855e512fd8e 100644 --- a/pkgs/applications/window-managers/evilwm/default.nix +++ b/pkgs/applications/window-managers/evilwm/default.nix @@ -1,19 +1,36 @@ -{ lib, stdenv, fetchurl, libX11, libXext, libXrandr, libXrender, - xorgproto, patches ? [] }: +{ lib +, stdenv +, fetchurl +, libX11 +, libXext +, libXrandr +, libXrender +, xorgproto +, patches ? [ ] +}: stdenv.mkDerivation rec { - name = "evilwm-1.1.1"; + pname = "evilwm"; + version = "1.1.1"; src = fetchurl { - url = "http://www.6809.org.uk/evilwm/${name}.tar.gz"; + url = "http://www.6809.org.uk/evilwm/evilwm-${version}.tar.gz"; sha256 = "79589c296a5915ee0bae1d231e8912601fc794d9f0a9cacb6b648ff9a5f2602a"; }; - buildInputs = [ libX11 libXext libXrandr libXrender - xorgproto ]; + buildInputs = [ + libX11 + libXext + libXrandr + libXrender + xorgproto + ]; - prePatch = ''substituteInPlace ./Makefile --replace /usr $out \ - --replace "CC = gcc" "#CC = gcc"''; + postPatch = '' + substituteInPlace ./Makefile \ + --replace /usr $out \ + --replace "CC = gcc" "#CC = gcc" + ''; # Allow users set their own list of patches inherit patches; @@ -21,14 +38,12 @@ stdenv.mkDerivation rec { meta = with lib; { homepage = "http://www.6809.org.uk/evilwm/"; description = "Minimalist window manager for the X Window System"; - license = { shortName = "evilwm"; fullName = "Custom, inherited from aewm and 9wm"; url = "http://www.6809.org.uk/evilwm/"; free = true; - }; # like BSD/MIT, but Share-Alike'y; See README. - + }; # like BSD/MIT, but Share-Alike'y; See README. maintainers = with maintainers; [ amiloradovsky ]; platforms = platforms.all; }; diff --git a/pkgs/applications/window-managers/eww/default.nix b/pkgs/applications/window-managers/eww/default.nix index 08160690dcbc..c2cc2f23cdb8 100644 --- a/pkgs/applications/window-managers/eww/default.nix +++ b/pkgs/applications/window-managers/eww/default.nix @@ -5,6 +5,7 @@ , gtk3 , withWayland ? false , gtk-layer-shell +, stdenv }: rustPlatform.buildRustPackage rec { @@ -39,5 +40,6 @@ rustPlatform.buildRustPackage rec { homepage = "https://github.com/elkowar/eww"; license = licenses.mit; maintainers = with maintainers; [ figsoda legendofmiracles ]; + broken = stdenv.isDarwin; }; } diff --git a/pkgs/applications/window-managers/i3/lock-fancy.nix b/pkgs/applications/window-managers/i3/lock-fancy.nix index 7e42a8efd7e9..9a1b959690a2 100644 --- a/pkgs/applications/window-managers/i3/lock-fancy.nix +++ b/pkgs/applications/window-managers/i3/lock-fancy.nix @@ -1,36 +1,49 @@ -{ lib, stdenv, fetchFromGitHub, coreutils, scrot, imagemagick, gawk -, i3lock-color, getopt, fontconfig +{ lib +, stdenv +, fetchFromGitHub +, coreutils +, scrot +, imagemagick +, gawk +, i3lock-color +, getopt +, fontconfig }: stdenv.mkDerivation rec { - rev = "7accfb2aa2f918d1a3ab975b860df1693d20a81a"; - name = "i3lock-fancy-unstable-2018-11-25_rev${builtins.substring 0 7 rev}"; + pname = "i3lock-fancy"; + version = "unstable-2018-11-25"; + src = fetchFromGitHub { owner = "meskarune"; repo = "i3lock-fancy"; - inherit rev; + rev = "7accfb2aa2f918d1a3ab975b860df1693d20a81a"; sha256 = "00lqsvz1knb8iqy8lnkn3sf4c2c4nzb0smky63qf48m8za5aw9b1"; }; - patchPhase = '' - sed -i -e "s|mktemp|${coreutils}/bin/mktemp|" i3lock-fancy - sed -i -e "s|'rm -f |'${coreutils}/bin/rm -f |" i3lock-fancy - sed -i -e "s|scrot -z |${scrot}/bin/scrot -z |" i3lock-fancy - sed -i -e "s|convert |${imagemagick.out}/bin/convert |" i3lock-fancy - sed -i -e "s|awk -F|${gawk}/bin/awk -F|" i3lock-fancy - sed -i -e "s| awk | ${gawk}/bin/awk |" i3lock-fancy - sed -i -e "s|i3lock -i |${i3lock-color}/bin/i3lock-color -i |" i3lock-fancy - sed -i -e 's|icon="/usr/share/i3lock-fancy/icons/lockdark.png"|icon="'$out'/share/i3lock-fancy/icons/lockdark.png"|' i3lock-fancy - sed -i -e 's|icon="/usr/share/i3lock-fancy/icons/lock.png"|icon="'$out'/share/i3lock-fancy/icons/lock.png"|' i3lock-fancy - sed -i -e "s|getopt |${getopt}/bin/getopt |" i3lock-fancy - sed -i -e "s|fc-match |${fontconfig.bin}/bin/fc-match |" i3lock-fancy - sed -i -e "s|shot=(import -window root)|shot=(${scrot}/bin/scrot -z -o)|" i3lock-fancy + + postPatch = '' + sed -i i3lock-fancy \ + -e "s|mktemp|${coreutils}/bin/mktemp|" \ + -e "s|'rm -f |'${coreutils}/bin/rm -f |" \ + -e "s|scrot -z |${scrot}/bin/scrot -z |" \ + -e "s|convert |${imagemagick.out}/bin/convert |" \ + -e "s|awk -F|${gawk}/bin/awk -F|" \ + -e "s| awk | ${gawk}/bin/awk |" \ + -e "s|i3lock -i |${i3lock-color}/bin/i3lock-color -i |" \ + -e 's|icon="/usr/share/i3lock-fancy/icons/lockdark.png"|icon="'$out'/share/i3lock-fancy/icons/lockdark.png"|' \ + -e 's|icon="/usr/share/i3lock-fancy/icons/lock.png"|icon="'$out'/share/i3lock-fancy/icons/lock.png"|' \ + -e "s|getopt |${getopt}/bin/getopt |" \ + -e "s|fc-match |${fontconfig.bin}/bin/fc-match |" \ + -e "s|shot=(import -window root)|shot=(${scrot}/bin/scrot -z -o)|" rm Makefile ''; + installPhase = '' mkdir -p $out/bin $out/share/i3lock-fancy/icons cp i3lock-fancy $out/bin/i3lock-fancy cp icons/lock*.png $out/share/i3lock-fancy/icons ''; + meta = with lib; { description = "i3lock is a bash script that takes a screenshot of the desktop, blurs the background and adds a lock icon and text"; homepage = "https://github.com/meskarune/i3lock-fancy"; diff --git a/pkgs/applications/window-managers/i3/status-rust.nix b/pkgs/applications/window-managers/i3/status-rust.nix index edb482ad15f0..defb44f0f35d 100644 --- a/pkgs/applications/window-managers/i3/status-rust.nix +++ b/pkgs/applications/window-managers/i3/status-rust.nix @@ -12,16 +12,16 @@ rustPlatform.buildRustPackage rec { pname = "i3status-rust"; - version = "0.20.4"; + version = "0.20.6"; src = fetchFromGitHub { owner = "greshake"; repo = pname; rev = "v${version}"; - sha256 = "sha256-lohMrsMCAnb2p7H+xfa24Wx3LEFxCAlGHfP9A70Hg48="; + sha256 = "sha256-FLMfXloAAIz/9KAtKFfB8uokQz/J8R+WsGarq/5cblo="; }; - cargoSha256 = "sha256-pe96VNTH49qgQ4yxKcAcQPN31W2k1mD9TdhNKBp4x5Q="; + cargoSha256 = "sha256-UVAF2rz0y6h3/rcTJ+31mMyJDLG7q40n6vBK8Wxultg="; nativeBuildInputs = [ pkg-config makeWrapper ]; diff --git a/pkgs/applications/window-managers/i3/status.nix b/pkgs/applications/window-managers/i3/status.nix index 8e9cb2d2b76f..bbbad532d096 100644 --- a/pkgs/applications/window-managers/i3/status.nix +++ b/pkgs/applications/window-managers/i3/status.nix @@ -1,10 +1,11 @@ { fetchurl, lib, stdenv, libconfuse, yajl, alsa-lib, libpulseaudio, libnl, pkg-config, asciidoc, xmlto, docbook_xml_dtd_45, docbook_xsl }: stdenv.mkDerivation rec { - name = "i3status-2.13"; + pname = "i3status"; + version = "2.13"; src = fetchurl { - url = "https://i3wm.org/i3status/${name}.tar.bz2"; + url = "https://i3wm.org/i3status/i3status-${version}.tar.bz2"; sha256 = "0rhlzb96mw64z2jnhwz9nibc7pxg549626lz5642xxk5hpzwk2ff"; }; diff --git a/pkgs/applications/window-managers/ion-3/default.nix b/pkgs/applications/window-managers/ion-3/default.nix index 8f172ac87003..4794de1d5f84 100644 --- a/pkgs/applications/window-managers/ion-3/default.nix +++ b/pkgs/applications/window-managers/ion-3/default.nix @@ -1,18 +1,25 @@ { lib, stdenv, fetchurl, xlibsWrapper, lua, gettext, groff }: -stdenv.mkDerivation { - name = "ion-3-20090110"; - meta = { - description = "Tiling tabbed window manager designed with keyboard users in mind"; - homepage = "http://modeemi.fi/~tuomov/ion"; - platforms = with lib.platforms; linux; - license = lib.licenses.lgpl21; - }; +stdenv.mkDerivation rec { + pname = "ion"; + version = "3-20090110"; + src = fetchurl { - url = "http://tuomov.iki.fi/software/dl/ion-3-20090110.tar.gz"; + url = "http://tuomov.iki.fi/software/dl/ion-${version}.tar.gz"; sha256 = "1nkks5a95986nyfkxvg2rik6zmwx0lh7szd5fji7yizccwzc9xns"; }; + buildInputs = [ xlibsWrapper lua gettext groff ]; + buildFlags = [ "LUA_DIR=${lua}" "X11_PREFIX=/no-such-path" "PREFIX=\${out}" ]; + installFlags = [ "PREFIX=\${out}" ]; + + meta = with lib; { + description = "Tiling tabbed window manager designed with keyboard users in mind"; + homepage = "http://modeemi.fi/~tuomov/ion"; + platforms = with platforms; linux; + license = licenses.lgpl21; + maintainers = with maintainers; [ ]; + }; } diff --git a/pkgs/applications/window-managers/jwm/0001-Fix-Gettext-Requirement.patch b/pkgs/applications/window-managers/jwm/0001-Fix-Gettext-Requirement.patch deleted file mode 100644 index f7b6a4cb9f16..000000000000 --- a/pkgs/applications/window-managers/jwm/0001-Fix-Gettext-Requirement.patch +++ /dev/null @@ -1,14 +0,0 @@ -diff --git a/configure.ac b/configure.ac -index 347d325..dce95a0 100644 ---- a/configure.ac -+++ b/configure.ac -@@ -489,7 +489,8 @@ fi - ############################################################################ - AM_ICONV - AM_GNU_GETTEXT([external]) --AM_GNU_GETTEXT_VERSION([0.19]) -+AM_GNU_GETTEXT_VERSION([0.19.6]) -+AM_GNU_GETTEXT_REQUIRE_VERSION([0.19.6]) - LDFLAGS="$LDFLAGS $LIBINTL $LIBICONV" - - ############################################################################ diff --git a/pkgs/applications/window-managers/jwm/default.nix b/pkgs/applications/window-managers/jwm/default.nix index 3c97c5630b08..2c9461d6388b 100644 --- a/pkgs/applications/window-managers/jwm/default.nix +++ b/pkgs/applications/window-managers/jwm/default.nix @@ -1,21 +1,19 @@ -{ lib, stdenv, fetchFromGitHub, pkg-config, automake, autoconf, libtool, gettext +{ lib, stdenv, fetchFromGitHub, pkg-config, autoreconfHook, gettext , which, xorg, libX11, libXext, libXinerama, libXpm, libXft, libXau, libXdmcp , libXmu, libpng, libjpeg, expat, xorgproto, librsvg, freetype, fontconfig }: stdenv.mkDerivation rec { pname = "jwm"; - version = "1685"; + version = "2.4.0"; src = fetchFromGitHub { owner = "joewing"; repo = "jwm"; - rev = "s${version}"; - sha256 = "1kyvy022sij898g2hm5spy5vq0kw6aqd7fsnawl2xyh06gwh29wg"; + rev = "v${version}"; + sha256 = "19fnrlw05njib13ljh7pmi48myfclra1xhy4b6hi74c6w6yz2fgj"; }; - patches = [ ./0001-Fix-Gettext-Requirement.patch ]; - - nativeBuildInputs = [ pkg-config automake autoconf libtool gettext which ]; + nativeBuildInputs = [ pkg-config gettext which autoreconfHook ]; buildInputs = [ libX11 @@ -38,12 +36,10 @@ stdenv.mkDerivation rec { enableParallelBuilding = true; - preConfigure = "./autogen.sh"; - meta = { homepage = "http://joewing.net/projects/jwm/"; description = "Joe's Window Manager is a light-weight X11 window manager"; - license = lib.licenses.gpl2; + license = lib.licenses.mit; platforms = lib.platforms.unix; maintainers = [ lib.maintainers.romildo ]; }; diff --git a/pkgs/applications/window-managers/larswm/default.nix b/pkgs/applications/window-managers/larswm/default.nix index e9d400378e62..ce212b1c682b 100644 --- a/pkgs/applications/window-managers/larswm/default.nix +++ b/pkgs/applications/window-managers/larswm/default.nix @@ -1,10 +1,11 @@ { lib, stdenv, fetchurl, imake, gccmakedep, libX11, libXext, libXmu }: -stdenv.mkDerivation { - name = "larswm-7.5.3"; +stdenv.mkDerivation rec { + pname = "larswm"; + version = "7.5.3"; src = fetchurl { - url = "mirror://sourceforge/larswm/larswm-7.5.3.tar.gz"; + url = "mirror://sourceforge/larswm/larswm-${version}.tar.gz"; sha256 = "1xmlx9g1nhklxjrg0wvsya01s4k5b9fphnpl9zdwp29mm484ni3v"; }; diff --git a/pkgs/applications/window-managers/oroborus/default.nix b/pkgs/applications/window-managers/oroborus/default.nix index 0124261e423f..d24abb68fb7e 100644 --- a/pkgs/applications/window-managers/oroborus/default.nix +++ b/pkgs/applications/window-managers/oroborus/default.nix @@ -15,7 +15,7 @@ stdenv.mkDerivation rec { libXft libXpm libXrandr libXrender xorgproto libXinerama ]; src = fetchurl { - url = "http://ftp.debian.org/debian/pool/main/o/oroborus/oroborus_${version}.tar.gz"; + url = "mirror://debian/pool/main/o/oroborus/oroborus_${version}.tar.gz"; sha256 = "12bvk8x8rfnymbfbwmdcrd9g8m1zxbcq7rgvfdkjr0gnpi0aa82j"; }; diff --git a/pkgs/applications/window-managers/picom/picom-next.nix b/pkgs/applications/window-managers/picom/picom-next.nix new file mode 100644 index 000000000000..67b510396f7d --- /dev/null +++ b/pkgs/applications/window-managers/picom/picom-next.nix @@ -0,0 +1,13 @@ +{ picom, lib, fetchFromGitHub }: + +picom.overrideAttrs (oldAttrs: rec { + pname = "picom-next"; + version = "unstable-2021-10-31"; + src = fetchFromGitHub { + owner = "yshui"; + repo = "picom"; + rev = "fade045eadf171d2c732820d6ebde7d1943a1397"; + sha256 = "fPiLZ63+Bw5VCxVNqj9i5had2YLa+jFMMf85MYdqvHU="; + }; + meta.maintainers = with lib.maintainers; oldAttrs.meta.maintainers ++ [ GKasparov ]; +}) diff --git a/pkgs/applications/window-managers/qtile/default.nix b/pkgs/applications/window-managers/qtile/default.nix index 786a47d49c34..e17cbce7e2bb 100644 --- a/pkgs/applications/window-managers/qtile/default.nix +++ b/pkgs/applications/window-managers/qtile/default.nix @@ -47,6 +47,9 @@ let psutil pyxdg pygobject3 + pywayland + pywlroots + xkbcommon ]; doCheck = false; # Requires X server #TODO this can be worked out with the existing NixOS testing infrastructure. diff --git a/pkgs/applications/window-managers/river/default.nix b/pkgs/applications/window-managers/river/default.nix index ff253b951b84..e59ce5449e2c 100644 --- a/pkgs/applications/window-managers/river/default.nix +++ b/pkgs/applications/window-managers/river/default.nix @@ -19,13 +19,13 @@ stdenv.mkDerivation rec { pname = "river"; - version = "unstable-2021-11-01"; + version = "0.1.0"; src = fetchFromGitHub { owner = "ifreund"; repo = pname; - rev = "363fd3f6a466004eec157a40e51684e56992b857"; - sha256 = "sha256-RzReUo1p2z4UQaO5n6PKQlEv0vTBGg+1Wq1UIYii0Mo="; + rev = "v${version}"; + sha256 = "03pdgrcpj8db9s14249815z76dyjwwma8xv6p9hpw79flk6rk7v7"; fetchSubmodules = true; }; @@ -34,7 +34,6 @@ stdenv.mkDerivation rec { buildInputs = [ wayland-protocols wlroots - pixman libxkbcommon pixman udev diff --git a/pkgs/applications/window-managers/tabbed/default.nix b/pkgs/applications/window-managers/tabbed/default.nix index 2eeae7f4da5e..7366ff196954 100644 --- a/pkgs/applications/window-managers/tabbed/default.nix +++ b/pkgs/applications/window-managers/tabbed/default.nix @@ -1,9 +1,8 @@ -{lib, stdenv, fetchgit, xorgproto, libX11, libXft, customConfig ? null, patches ? [] }: - -with lib; +{ lib, stdenv, fetchgit, xorgproto, libX11, libXft, customConfig ? null, patches ? [ ] }: stdenv.mkDerivation { - name = "tabbed-20180310"; + pname = "tabbed"; + version = "unstable-2018-03-10"; src = fetchgit { url = "https://git.suckless.org/tabbed"; @@ -23,7 +22,7 @@ stdenv.mkDerivation { "PREFIX=$(out)" ]; - meta = { + meta = with lib; { homepage = "https://tools.suckless.org/tabbed"; description = "Simple generic tabbed fronted to xembed aware applications"; license = licenses.mit; diff --git a/pkgs/applications/window-managers/trayer/default.nix b/pkgs/applications/window-managers/trayer/default.nix index c210b39fe181..57cf0fc93fac 100644 --- a/pkgs/applications/window-managers/trayer/default.nix +++ b/pkgs/applications/window-managers/trayer/default.nix @@ -1,22 +1,24 @@ { lib, stdenv, fetchFromGitHub, pkg-config, gdk-pixbuf, gtk2 }: stdenv.mkDerivation rec { - name = "trayer-1.1.8"; - - nativeBuildInputs = [ pkg-config ]; - buildInputs = [ gdk-pixbuf gtk2 ]; + pname = "trayer"; + version = "1.1.8"; src = fetchFromGitHub { owner = "sargon"; repo = "trayer-srg"; - rev = name; + rev = "${pname}-${version}"; sha256 = "1mvhwaqa9bng9wh3jg3b7y8gl7nprbydmhg963xg0r076jyzv0cg"; }; - preConfigure = '' + postPatch = '' patchShebangs configure ''; + nativeBuildInputs = [ pkg-config ]; + + buildInputs = [ gdk-pixbuf gtk2 ]; + makeFlags = [ "PREFIX=$(out)" ]; meta = with lib; { diff --git a/pkgs/applications/window-managers/vwm/default.nix b/pkgs/applications/window-managers/vwm/default.nix index 9eea18f79d60..7c47eb9c4d99 100644 --- a/pkgs/applications/window-managers/vwm/default.nix +++ b/pkgs/applications/window-managers/vwm/default.nix @@ -1,11 +1,21 @@ -{lib, stdenv, fetchurl, ncurses, pkg-config, glib, libviper, libpseudo, gpm, -libvterm}: +{ lib +, stdenv +, fetchurl +, ncurses +, pkg-config +, glib +, libviper +, libpseudo +, gpm +, libvterm +}: stdenv.mkDerivation rec { - name = "vwm-2.1.3"; + pname = "vwm"; + version = "2.1.3"; src = fetchurl { - url = "mirror://sourceforge/vwm/${name}.tar.gz"; + url = "mirror://sourceforge/vwm/vwm-${version}.tar.gz"; sha256 = "1r5wiqyfqwnyx7dfihixlnavbvg8rni36i4gq169aisjcg7laxaf"; }; diff --git a/pkgs/build-support/build-dotnet-package/default.nix b/pkgs/build-support/build-dotnet-package/default.nix index 440b10044f0f..16dfd694ed3d 100644 --- a/pkgs/build-support/build-dotnet-package/default.nix +++ b/pkgs/build-support/build-dotnet-package/default.nix @@ -3,7 +3,7 @@ attrsOrig @ { baseName , version -, buildInputs ? [] +, nativeBuildInputs ? [] , xBuildFiles ? [ ] , xBuildFlags ? [ "/p:Configuration=Release" ] , outputFiles ? [ "bin/Release/*" ] @@ -19,12 +19,12 @@ attrsOrig @ attrs = { name = "${baseName}-${version}"; - nativeBuildInputs = [ pkg-config ]; - buildInputs = [ - mono - dotnetbuildhelpers + nativeBuildInputs = [ + pkg-config makeWrapper - ] ++ buildInputs; + dotnetbuildhelpers + mono + ] ++ nativeBuildInputs; configurePhase = '' runHook preConfigure @@ -87,7 +87,7 @@ attrsOrig @ then echo "$dll already exported by a buildInputs, not re-exporting" else - ${dotnetbuildhelpers}/bin/create-pkg-config-for-dll.sh "$out/lib/pkgconfig" "$dll" + create-pkg-config-for-dll.sh "$out/lib/pkgconfig" "$dll" fi done done @@ -113,4 +113,4 @@ attrsOrig @ ''; }; in - stdenv.mkDerivation (attrs // (builtins.removeAttrs attrsOrig [ "buildInputs" ] )) + stdenv.mkDerivation (attrs // (builtins.removeAttrs attrsOrig [ "nativeBuildInputs" ] )) diff --git a/pkgs/build-support/fetchgit/default.nix b/pkgs/build-support/fetchgit/default.nix index c139030ea973..3a05008dacb5 100644 --- a/pkgs/build-support/fetchgit/default.nix +++ b/pkgs/build-support/fetchgit/default.nix @@ -12,7 +12,7 @@ else ""; in "${if matched == null then base else builtins.head matched}${appendShort}"; in -{ url, rev ? "HEAD", md5 ? "", sha256 ? "", leaveDotGit ? deepClone +{ url, rev ? "HEAD", md5 ? "", sha256 ? "", hash ? "", leaveDotGit ? deepClone , fetchSubmodules ? true, deepClone ? false , branchName ? null , name ? urlToName url rev @@ -54,6 +54,8 @@ assert deepClone -> leaveDotGit; if md5 != "" then throw "fetchgit does not support md5 anymore, please use sha256" +else if hash != "" && sha256 != "" then + throw "Only one of sha256 or hash can be set" else stdenvNoCC.mkDerivation { inherit name; @@ -63,9 +65,14 @@ stdenvNoCC.mkDerivation { nativeBuildInputs = [ git ] ++ lib.optionals fetchLFS [ git-lfs ]; - outputHashAlgo = "sha256"; + outputHashAlgo = if hash != "" then null else "sha256"; outputHashMode = "recursive"; - outputHash = sha256; + outputHash = if hash != "" then + hash + else if sha256 != "" then + sha256 + else + lib.fakeSha256; inherit url rev leaveDotGit fetchLFS fetchSubmodules deepClone branchName postFetch; diff --git a/pkgs/build-support/fetchurl/mirrors.nix b/pkgs/build-support/fetchurl/mirrors.nix index 8dc4f4207b6c..3ab4be4d8be2 100644 --- a/pkgs/build-support/fetchurl/mirrors.nix +++ b/pkgs/build-support/fetchurl/mirrors.nix @@ -2,7 +2,7 @@ # Content-addressable Nix mirrors. hashedMirrors = [ - "http://tarballs.nixos.org" + "https://tarballs.nixos.org" ]; # Mirrors for mirror://site/filename URIs, where "site" is @@ -11,7 +11,7 @@ luarocks = [ "https://luarocks.org/" "https://raw.githubusercontent.com/rocks-moonscript-org/moonrocks-mirror/master/" - "http://luafr.org/moonrocks/" + "https://luafr.org/moonrocks/" "http://luarocks.logiceditor.com/rocks/" ]; @@ -41,21 +41,22 @@ # mirror. "https://ftpmirror.gnu.org/" - "http://ftp.nluug.nl/pub/gnu/" - "http://mirrors.kernel.org/gnu/" - "http://mirror.ibcp.fr/pub/gnu/" - "http://mirror.dogado.de/gnu/" - "http://mirror.tochlab.net/pub/gnu/" - "ftp://ftp.funet.fi/pub/mirrors/ftp.gnu.org/gnu/" + "https://ftp.nluug.nl/pub/gnu/" + "https://mirrors.kernel.org/gnu/" + "https://mirror.ibcp.fr/pub/gnu/" + "https://mirror.dogado.de/gnu/" + "https://mirror.tochlab.net/pub/gnu/" # This one is the master repository, and thus it's always up-to-date. - "http://ftp.gnu.org/pub/gnu/" + "https://ftp.gnu.org/pub/gnu/" + + "ftp://ftp.funet.fi/pub/mirrors/ftp.gnu.org/gnu/" ]; # GCC. gcc = [ "https://bigsearcher.com/mirrors/gcc/" - "http://mirror.koddos.net/gcc/" + "https://mirror.koddos.net/gcc/" "ftp://ftp.nluug.nl/mirror/languages/gcc/" "ftp://ftp.fu-berlin.de/unix/languages/gcc/" "ftp://ftp.irisa.fr/pub/mirrors/gcc.gnu.org/gcc/" @@ -65,18 +66,16 @@ # GnuPG. gnupg = [ "https://gnupg.org/ftp/gcrypt/" + "https://mirrors.dotsrc.org/gcrypt/" + "https://ftp.heanet.ie/mirrors/ftp.gnupg.org/gcrypt/" + "https://www.mirrorservice.org/sites/ftp.gnupg.org/gcrypt/" "http://www.ring.gr.jp/pub/net/" - "http://mirrors.dotsrc.org/gcrypt/" - "http://ftp.heanet.ie/mirrors/ftp.gnupg.org/gcrypt/" - "http://www.mirrorservice.org/sites/ftp.gnupg.org/gcrypt/" ]; # kernel.org's /pub (/pub/{linux,software}) tree. kernel = [ - "http://cdn.kernel.org/pub/" - "http://ramses.wh2.tu-dresden.de/pub/mirrors/kernel.org/" + "https://cdn.kernel.org/pub/" "http://linux-kernel.uio.no/pub/" - "http://kernel.osuosl.org/pub/" "ftp://ftp.funet.fi/pub/mirrors/ftp.kernel.org/pub/" ]; @@ -85,52 +84,46 @@ "https://download.kde.org/download.php?url=" "https://ftp.gwdg.de/pub/linux/kde/" "https://mirrors.ocf.berkeley.edu/kde/" - "http://mirrors.mit.edu/kde/" + "https://mirrors.mit.edu/kde/" "https://mirrors.ustc.edu.cn/kde/" - "http://ftp.funet.fi/pub/mirrors/ftp.kde.org/pub/kde/" + "https://ftp.funet.fi/pub/mirrors/ftp.kde.org/pub/kde/" ]; # Gentoo files. gentoo = [ - "http://ftp.snt.utwente.nl/pub/os/linux/gentoo/" - "http://distfiles.gentoo.org/" - "ftp://mirrors.kernel.org/gentoo/" + "https://ftp.snt.utwente.nl/pub/os/linux/gentoo/" + "https://distfiles.gentoo.org/" + "https://mirrors.kernel.org/gentoo/" ]; savannah = [ # Mirrors from https://download-mirror.savannah.gnu.org/releases/00_MIRRORS.html - "http://mirror.easyname.at/nongnu/" + "https://mirror.easyname.at/nongnu/" + "https://savannah.c3sl.ufpr.br/" + "https://mirror.csclub.uwaterloo.ca/nongnu/" + "https://mirror.cedia.org.ec/nongnu/" + "https://ftp.igh.cnrs.fr/pub/nongnu/" + "https://mirror6.layerjet.com/nongnu" + "https://mirror.netcologne.de/savannah/" + "https://ftp.cc.uoc.gr/mirrors/nongnu.org/" + "https://nongnu.uib.no/" + "https://ftp.acc.umu.se/mirror/gnu.org/savannah/" "http://mirror2.klaus-uwe.me/nongnu/" - "http://savannah.c3sl.ufpr.br/" - "http://mirror.csclub.uwaterloo.ca/nongnu/" - "http://mirror.cedia.org.ec/nongnu/" - "http://ftp.igh.cnrs.fr/pub/nongnu/" - "http://mirror6.layerjet.com/nongnu" - "http://mirror.netcologne.de/savannah/" - "http://ftp.cc.uoc.gr/mirrors/nongnu.org/" - "http://nongnu.uib.no/" "http://mirrors.fe.up.pt/pub/nongnu/" - "http://ftp.acc.umu.se/mirror/gnu.org/savannah/" "http://ftp.twaren.net/Unix/NonGNU/" - "http://ftp.yzu.edu.tw/pub/nongnu/" - "http://mirror.rackdc.com/savannah/" "http://savannah-nongnu-org.ip-connect.vn.ua/" "http://www.mirrorservice.org/sites/download.savannah.gnu.org/releases/" "http://gnu.mirrors.pair.com/savannah/savannah/" "ftp://mirror.easyname.at/nongnu/" "ftp://mirror2.klaus-uwe.me/nongnu/" - "ftp://savannah.c3sl.ufpr.br/savannah-nongnu/" "ftp://mirror.csclub.uwaterloo.ca/nongnu/" - "ftp://mirror.cedia.org.ec/nongnu" "ftp://ftp.igh.cnrs.fr/pub/nongnu/" "ftp://mirror.netcologne.de/savannah/" "ftp://nongnu.uib.no/pub/nongnu/" "ftp://mirrors.fe.up.pt/pub/nongnu/" "ftp://ftp.twaren.net/Unix/NonGNU/" - "ftp://ftp.yzu.edu.tw/pub/nongnu/" "ftp://savannah-nongnu-org.ip-connect.vn.ua/mirror/savannah.nongnu.org/" "ftp://ftp.mirrorservice.org/sites/download.savannah.gnu.org/releases/" - "ftp://spinellicreations.com/gnu_dot_org_savannah_mirror/" ]; samba = [ @@ -140,8 +133,8 @@ # BitlBee mirrors, see https://www.bitlbee.org/main.php/mirrors.html . bitlbee = [ - "http://get.bitlbee.org/" - "http://ftp.snt.utwente.nl/pub/software/bitlbee/" + "https://get.bitlbee.org/" + "https://ftp.snt.utwente.nl/pub/software/bitlbee/" "http://bitlbee.intergenia.de/" ]; @@ -150,109 +143,92 @@ "https://www.imagemagick.org/download/" "https://mirror.checkdomain.de/imagemagick/" "https://ftp.nluug.nl/ImageMagick/" - "ftp://ftp.sunet.se/pub/multimedia/graphics/ImageMagick/" # also contains older versions removed from most mirrors - "http://ftp.sunet.se/pub/multimedia/graphics/ImageMagick/" - "ftp://ftp.imagemagick.org/pub/ImageMagick/" - "http://ftp.fifi.org/ImageMagick/" - "ftp://ftp.fifi.org/ImageMagick/" + "https://ftp.sunet.se/mirror/imagemagick.org/ftp/" + "ftp://ftp.sunet.se/mirror/imagemagick.org/ftp/" # also contains older versions removed from most mirrors ]; # CPAN mirrors. cpan = [ "https://cpan.metacpan.org/" "https://cpan.perl.org/" - "http://backpan.perl.org/" # for old releases + "https://backpan.perl.org/" # for old releases ]; # CentOS. centos = [ - "http://mirror.centos.org/centos/" # For old releases - "http://vault.centos.org/" + "https://vault.centos.org/" "https://archive.kernel.org/centos-vault/" - "http://ftp.jaist.ac.jp/pub/Linux/CentOS-vault/" - "http://mirrors.aliyun.com/centos-vault/" + "https://ftp.jaist.ac.jp/pub/Linux/CentOS-vault/" + "https://mirrors.aliyun.com/centos-vault/" "https://mirror.chpc.utah.edu/pub/vault.centos.org/" "https://mirror.math.princeton.edu/pub/centos-vault/" "https://mirrors.tripadvisor.com/centos-vault/" + "http://mirror.centos.org/centos/" ]; # Debian. debian = [ - "http://httpredir.debian.org/debian/" + "https://httpredir.debian.org/debian/" + "https://ftp.debian.org/debian/" "ftp://ftp.de.debian.org/debian/" "ftp://ftp.fr.debian.org/debian/" "ftp://ftp.nl.debian.org/debian/" "ftp://ftp.ru.debian.org/debian/" - "http://ftp.debian.org/debian/" "http://archive.debian.org/debian-archive/debian/" "ftp://ftp.funet.fi/pub/mirrors/ftp.debian.org/debian/" ]; # Ubuntu. ubuntu = [ - "http://nl.archive.ubuntu.com/ubuntu/" + "https://nl.archive.ubuntu.com/ubuntu/" + "https://old-releases.ubuntu.com/ubuntu/" "http://de.archive.ubuntu.com/ubuntu/" "http://archive.ubuntu.com/ubuntu/" - "http://old-releases.ubuntu.com/ubuntu/" ]; # Fedora (please only add full mirrors that carry old Fedora distributions as well). # See: https://mirrors.fedoraproject.org/publiclist (but not all carry old content). fedora = [ - "http://archives.fedoraproject.org/pub/fedora/" - "http://fedora.osuosl.org/" + "https://archives.fedoraproject.org/pub/fedora/" + "https://fedora.osuosl.org/" + "https://ftp.funet.fi/pub/mirrors/ftp.redhat.com/pub/fedora/" + "https://ftp.linux.cz/pub/linux/fedora/" + "https://archives.fedoraproject.org/pub/archive/fedora/" "http://ftp.nluug.nl/pub/os/Linux/distr/fedora/" - "http://ftp.funet.fi/pub/mirrors/ftp.redhat.com/pub/fedora/" - "http://fedora.bhs.mirrors.ovh.net/" "http://mirror.csclub.uwaterloo.ca/fedora/" - "http://ftp.linux.cz/pub/linux/fedora/" - "http://ftp.heanet.ie/pub/fedora/" "http://mirror.1000mbps.com/fedora/" - "http://archives.fedoraproject.org/pub/archive/fedora/" ]; # openSUSE. opensuse = [ - "http://opensuse.hro.nl/opensuse/distribution/" - "http://ftp.funet.fi/pub/linux/mirrors/opensuse/distribution/" - "http://ftp.belnet.be/mirror/ftp.opensuse.org/distribution/" - "http://ftp.uni-kassel.de/opensuse/distribution/" - "http://ftp.opensuse.org/pub/opensuse/distribution/" - "http://ftp5.gwdg.de/pub/opensuse/discontinued/distribution/" + "https://opensuse.hro.nl/opensuse/distribution/" + "https://ftp.funet.fi/pub/linux/mirrors/opensuse/distribution/" + "https://ftp.opensuse.org/pub/opensuse/distribution/" + "https://ftp5.gwdg.de/pub/opensuse/discontinued/distribution/" "http://ftp.hosteurope.de/mirror/ftp.opensuse.org/discontinued/" - "http://opensuse.mirror.server4you.net/distribution/" - "http://ftp.nsysu.edu.tw/Linux/OpenSuSE/distribution/" ]; - # Gnome (see http://ftp.gnome.org/pub/GNOME/MIRRORS). gnome = [ # This one redirects to some mirror closeby, so it should be all you need. - "http://download.gnome.org/" + "https://download.gnome.org/" - "http://ftp.unina.it/pub/linux/GNOME/" - "http://fr2.rpmfind.net/linux/gnome.org/" - "ftp://ftp.dit.upm.es/pub/GNOME/" - "http://ftp.acc.umu.se/pub/GNOME/" - "http://ftp.belnet.be/mirror/ftp.gnome.org/" - "http://linorg.usp.br/gnome/" - "http://mirror.aarnet.edu.au/pub/GNOME/" + "https://fr2.rpmfind.net/linux/gnome.org/" + "https://ftp.acc.umu.se/pub/GNOME/" + "https://ftp.belnet.be/mirror/ftp.gnome.org/" "ftp://ftp.cse.buffalo.edu/pub/Gnome/" "ftp://ftp.nara.wide.ad.jp/pub/X11/GNOME/" ]; xfce = [ - "http://archive.xfce.org/" - "http://mirror.netcologne.de/xfce/" + "https://archive.xfce.org/" + "https://mirror.netcologne.de/xfce/" + "https://archive.be.xfce.org/xfce/" + "https://archive.al-us.xfce.org/" "http://archive.se.xfce.org/xfce/" - "http://archive.be.xfce.org/xfce/" "http://mirror.perldude.de/archive.xfce.org/" "http://archive.be2.xfce.org/" "http://ftp.udc.es/xfce/" - "http://archive.al-us.xfce.org/" - "http://mirror.yongbok.net/X11/xfce-mirror/" - "http://mirrors.tummy.com/pub/archive.xfce.org/" - "http://xfce.mirror.uber.com.au/" ]; # X.org. @@ -261,24 +237,19 @@ "https://ftp.x.org/archive/" ]; - # Apache mirrors (see http://www.apache.org/mirrors/). apache = [ "https://www-eu.apache.org/dist/" "https://ftp.wayne.edu/apache/" - "http://www.eu.apache.org/dist/" - "ftp://ftp.fu-berlin.de/unix/www/apache/" - "http://ftp.tudelft.nl/apache/" - "http://mirror.cc.columbia.edu/pub/software/apache/" "https://www.apache.org/dist/" "https://archive.apache.org/dist/" # fallback for old releases + "https://apache.cs.uu.nl/" + "https://apache.cs.utah.edu/" + "http://ftp.tudelft.nl/apache/" "ftp://ftp.funet.fi/pub/mirrors/apache.org/" - "http://apache.cs.uu.nl/" - "http://apache.cs.utah.edu/" ]; postgresql = [ - "http://ftp.postgresql.org/pub/" - "ftp://ftp.postgresql.org/pub/" + "https://ftp.postgresql.org/pub/" ]; metalab = [ @@ -286,7 +257,7 @@ "ftp://ftp.metalab.unc.edu/pub/linux/" ]; - # Bioconductor mirrors (from http://bioconductor.org/about/mirrors) + # Bioconductor mirrors (from https://bioconductor.org/about/mirrors/) # The commented-out ones don't seem to allow direct package downloads; # they serve error messages that result in hash mismatches instead. bioc = [ @@ -295,82 +266,80 @@ # http://bioconductor.fmrp.usp.br/ # http://mirror.aarnet.edu.au/pub/bioconductor/ # http://watson.nci.nih.gov/bioc_mirror/ + "https://bioconductor.statistik.tu-dortmund.de/packages/" + "https://mirrors.ustc.edu.cn/bioc/" "http://bioconductor.jp/packages/" - "http://bioconductor.statistik.tu-dortmund.de/packages/" - "http://mirrors.ustc.edu.cn/bioc/" ]; # Hackage mirrors hackage = [ - "http://hackage.haskell.org/package/" - "http://hdiff.luite.com/packages/archive/package/" - "http://hackage.fpcomplete.com/package/" - "http://objects-us-east-1.dream.io/hackage-mirror/package/" + "https://hackage.haskell.org/package/" ]; # Roy marples mirrors roy = [ - "http://roy.marples.name/downloads/" - "http://cflags.cc/roy/" + "https://roy.marples.name/downloads/" + "https://cflags.cc/roy/" ]; - # Sage mirrors (http://www.sagemath.org/mirrors.html) + # Sage mirrors (https://www.sagemath.org/mirrors.html) sageupstream = [ - # Africa - "ftp://ftp.sun.ac.za/pub/mirrors/www.sagemath.org/spkg/upstream/" - "http://sagemath.mirror.ac.za/spkg/upstream/" - "https://ftp.leg.uct.ac.za/pub/packages/sage/spkg/upstream/" - "http://mirror.ufs.ac.za/sagemath/spkg/upstream/" + # Africa (HTTPS) + "https://sagemath.mirror.ac.za/spkg/upstream/" + "https://mirror.ufs.ac.za/sagemath/spkg/upstream/" - # America, North - "http://mirrors-usa.go-parts.com/sage/sagemath/spkg/upstream/" - "http://mirrors.mit.edu/sage/spkg/upstream/" - "http://www.cecm.sfu.ca/sage/spkg/upstream/" - "http://files.sagemath.org/spkg/upstream/" - "http://mirror.clibre.uqam.ca/sage/spkg/upstream/" + # America, North (HTTPS) + "https://mirrors.mit.edu/sage/spkg/upstream/" "https://mirrors.xmission.com/sage/spkg/upstream/" - # America, South - "http://sagemath.c3sl.ufpr.br/spkg/upstream/" - "http://linorg.usp.br/sage/spkg/upstream" - - # Asia - "http://mirror.hust.edu.cn/sagemath/spkg/upstream/" - "https://ftp.iitm.ac.in/sage/spkg/upstream/" - "http://ftp.kaist.ac.kr/sage/spkg/upstream/" - "http://ftp.riken.jp/sagemath/spkg/upstream/" + # Asia (HTTPS) "https://mirrors.tuna.tsinghua.edu.cn/sagemath/spkg/upstream/" "https://mirrors.ustc.edu.cn/sagemath/spkg/upstream/" "http://ftp.tsukuba.wide.ad.jp/software/sage/spkg/upstream/" - "http://ftp.yz.yamagata-u.ac.jp/pub/math/sage/spkg/upstream/" + "https://ftp.yz.yamagata-u.ac.jp/pub/math/sage/spkg/upstream/" "https://mirror.yandex.ru/mirrors/sage.math.washington.edu/spkg/upstream/" - # Australia - "http://mirror.aarnet.edu.au/pub/sage/spkg/upstream/" + # Australia (HTTPS) + "https://mirror.aarnet.edu.au/pub/sage/spkg/upstream/" - # Europe - "http://sage.mirror.garr.it/mirrors/sage/spkg/upstream/" - "http://mirror.switch.ch/mirror/sagemath/spkg/upstream/" + # Europe (HTTPS) + "https://sage.mirror.garr.it/mirrors/sage/spkg/upstream/" + "https://www-ftp.lip6.fr/pub/math/sagemath/spkg/upstream/" + + # Africa (non-HTTPS) + "ftp://ftp.sun.ac.za/pub/mirrors/www.sagemath.org/spkg/upstream/" + + # America, North (non-HTTPS) + "http://www.cecm.sfu.ca/sage/spkg/upstream/" + + # America, South (non-HTTPS) + "http://sagemath.c3sl.ufpr.br/spkg/upstream/" + "http://linorg.usp.br/sage/spkg/upstream" + + # Asia (non-HTTPS) + "http://ftp.kaist.ac.kr/sage/spkg/upstream/" + "http://ftp.riken.jp/sagemath/spkg/upstream/" + + # Europe (non-HTTPS) "http://mirrors.fe.up.pt/pub/sage/spkg/upstream/" - "http://www-ftp.lip6.fr/pub/math/sagemath/spkg/upstream/" "http://ftp.ntua.gr/pub/sagemath/spkg/upstream/" ]; # MySQL mirrors mysql = [ - "http://cdn.mysql.com/Downloads/" + "https://cdn.mysql.com/Downloads/" ]; # OpenBSD mirrors openbsd = [ - "http://ftp.openbsd.org/pub/OpenBSD/" + "https://ftp.openbsd.org/pub/OpenBSD/" "ftp://ftp.nluug.nl/pub/OpenBSD/" "ftp://ftp-stud.fht-esslingen.de/pub/OpenBSD/" ]; # Steam Runtime mirrors steamrt = [ - "http://repo.steampowered.com/steamrt/" + "https://repo.steampowered.com/steamrt/" "https://public.abbradar.moe/steamrt/" ]; @@ -389,7 +358,7 @@ # Mozilla projects. mozilla = [ - "http://download.cdn.mozilla.net/pub/mozilla.org/" + "https://download.cdn.mozilla.net/pub/mozilla.org/" "https://archive.mozilla.org/pub/" ]; diff --git a/pkgs/build-support/libredirect/default.nix b/pkgs/build-support/libredirect/default.nix index 42525ec98a7e..f87c6d23dd79 100644 --- a/pkgs/build-support/libredirect/default.nix +++ b/pkgs/build-support/libredirect/default.nix @@ -38,11 +38,11 @@ stdenv.mkDerivation rec { install -vD "$libName" "$out/lib/$libName" + # Provide a setup hook that injects our library into every process. mkdir -p "$hook/nix-support" cat <<SETUP_HOOK > "$hook/nix-support/setup-hook" ${if stdenv.isDarwin then '' export DYLD_INSERT_LIBRARIES="$out/lib/$libName" - export DYLD_FORCE_FLAT_NAMESPACE=1 '' else '' export LD_PRELOAD="$out/lib/$libName" ''} diff --git a/pkgs/build-support/libredirect/libredirect.c b/pkgs/build-support/libredirect/libredirect.c index c7058ce123c5..7dac4684722f 100644 --- a/pkgs/build-support/libredirect/libredirect.c +++ b/pkgs/build-support/libredirect/libredirect.c @@ -2,6 +2,7 @@ #include <stdio.h> #include <stdarg.h> #include <stdlib.h> +#include <unistd.h> #include <dlfcn.h> #include <sys/types.h> #include <sys/stat.h> @@ -13,6 +14,22 @@ #define MAX_REDIRECTS 128 +#ifdef __APPLE__ + struct dyld_interpose { + const void * replacement; + const void * replacee; + }; + #define WRAPPER(ret, name) static ret _libredirect_wrapper_##name + #define LOOKUP_REAL(name) &name + #define WRAPPER_DEF(name) \ + __attribute__((used)) static struct dyld_interpose _libredirect_interpose_##name \ + __attribute__((section("__DATA,__interpose"))) = { &_libredirect_wrapper_##name, &name }; +#else + #define WRAPPER(ret, name) ret name + #define LOOKUP_REAL(name) dlsym(RTLD_NEXT, #name) + #define WRAPPER_DEF(name) +#endif + static int nrRedirects = 0; static char * from[MAX_REDIRECTS]; static char * to[MAX_REDIRECTS]; @@ -80,9 +97,9 @@ static int open_needs_mode(int flags) it contains only what we needed for programs in Nixpkgs. Just add more functions as needed. */ -int open(const char * path, int flags, ...) +WRAPPER(int, open)(const char * path, int flags, ...) { - int (*open_real) (const char *, int, mode_t) = dlsym(RTLD_NEXT, "open"); + int (*open_real) (const char *, int, mode_t) = LOOKUP_REAL(open); mode_t mode = 0; if (open_needs_mode(flags)) { va_list ap; @@ -93,10 +110,12 @@ int open(const char * path, int flags, ...) char buf[PATH_MAX]; return open_real(rewrite(path, buf), flags, mode); } +WRAPPER_DEF(open) -int open64(const char * path, int flags, ...) +#ifndef __APPLE__ +WRAPPER(int, open64)(const char * path, int flags, ...) { - int (*open64_real) (const char *, int, mode_t) = dlsym(RTLD_NEXT, "open64"); + int (*open64_real) (const char *, int, mode_t) = LOOKUP_REAL(open64); mode_t mode = 0; if (open_needs_mode(flags)) { va_list ap; @@ -107,10 +126,12 @@ int open64(const char * path, int flags, ...) char buf[PATH_MAX]; return open64_real(rewrite(path, buf), flags, mode); } +WRAPPER_DEF(open64) +#endif -int openat(int dirfd, const char * path, int flags, ...) +WRAPPER(int, openat)(int dirfd, const char * path, int flags, ...) { - int (*openat_real) (int, const char *, int, mode_t) = dlsym(RTLD_NEXT, "openat"); + int (*openat_real) (int, const char *, int, mode_t) = LOOKUP_REAL(openat); mode_t mode = 0; if (open_needs_mode(flags)) { va_list ap; @@ -121,57 +142,73 @@ int openat(int dirfd, const char * path, int flags, ...) char buf[PATH_MAX]; return openat_real(dirfd, rewrite(path, buf), flags, mode); } +WRAPPER_DEF(openat) -FILE * fopen(const char * path, const char * mode) +WRAPPER(FILE *, fopen)(const char * path, const char * mode) { - FILE * (*fopen_real) (const char *, const char *) = dlsym(RTLD_NEXT, "fopen"); + FILE * (*fopen_real) (const char *, const char *) = LOOKUP_REAL(fopen); char buf[PATH_MAX]; return fopen_real(rewrite(path, buf), mode); } +WRAPPER_DEF(fopen) -FILE * __nss_files_fopen(const char * path) +#ifndef __APPLE__ +WRAPPER(FILE *, __nss_files_fopen)(const char * path) { - FILE * (*__nss_files_fopen_real) (const char *) = dlsym(RTLD_NEXT, "__nss_files_fopen"); + FILE * (*__nss_files_fopen_real) (const char *) = LOOKUP_REAL(__nss_files_fopen); char buf[PATH_MAX]; return __nss_files_fopen_real(rewrite(path, buf)); } +WRAPPER_DEF(__nss_files_fopen) +#endif -FILE * fopen64(const char * path, const char * mode) +#ifndef __APPLE__ +WRAPPER(FILE *, fopen64)(const char * path, const char * mode) { - FILE * (*fopen64_real) (const char *, const char *) = dlsym(RTLD_NEXT, "fopen64"); + FILE * (*fopen64_real) (const char *, const char *) = LOOKUP_REAL(fopen64); char buf[PATH_MAX]; return fopen64_real(rewrite(path, buf), mode); } +WRAPPER_DEF(fopen64) +#endif -int __xstat(int ver, const char * path, struct stat * st) +#ifndef __APPLE__ +WRAPPER(int, __xstat)(int ver, const char * path, struct stat * st) { - int (*__xstat_real) (int ver, const char *, struct stat *) = dlsym(RTLD_NEXT, "__xstat"); + int (*__xstat_real) (int ver, const char *, struct stat *) = LOOKUP_REAL(__xstat); char buf[PATH_MAX]; return __xstat_real(ver, rewrite(path, buf), st); } +WRAPPER_DEF(__xstat) +#endif -int __xstat64(int ver, const char * path, struct stat64 * st) +#ifndef __APPLE__ +WRAPPER(int, __xstat64)(int ver, const char * path, struct stat64 * st) { - int (*__xstat64_real) (int ver, const char *, struct stat64 *) = dlsym(RTLD_NEXT, "__xstat64"); + int (*__xstat64_real) (int ver, const char *, struct stat64 *) = LOOKUP_REAL(__xstat64); char buf[PATH_MAX]; return __xstat64_real(ver, rewrite(path, buf), st); } +WRAPPER_DEF(__xstat64) +#endif -int stat(const char * path, struct stat * st) +WRAPPER(int, stat)(const char * path, struct stat * st) { - int (*__stat_real) (const char *, struct stat *) = dlsym(RTLD_NEXT, "stat"); + int (*__stat_real) (const char *, struct stat *) = LOOKUP_REAL(stat); char buf[PATH_MAX]; return __stat_real(rewrite(path, buf), st); } +WRAPPER_DEF(stat) -int access(const char * path, int mode) +WRAPPER(int, access)(const char * path, int mode) { - int (*access_real) (const char *, int mode) = dlsym(RTLD_NEXT, "access"); + int (*access_real) (const char *, int mode) = LOOKUP_REAL(access); char buf[PATH_MAX]; return access_real(rewrite(path, buf), mode); } +WRAPPER_DEF(access) -int posix_spawn(pid_t * pid, const char * path, +WRAPPER(int, posix_spawn)(pid_t * pid, const char * path, const posix_spawn_file_actions_t * file_actions, const posix_spawnattr_t * attrp, char * const argv[], char * const envp[]) @@ -179,12 +216,13 @@ int posix_spawn(pid_t * pid, const char * path, int (*posix_spawn_real) (pid_t *, const char *, const posix_spawn_file_actions_t *, const posix_spawnattr_t *, - char * const argv[], char * const envp[]) = dlsym(RTLD_NEXT, "posix_spawn"); + char * const argv[], char * const envp[]) = LOOKUP_REAL(posix_spawn); char buf[PATH_MAX]; return posix_spawn_real(pid, rewrite(path, buf), file_actions, attrp, argv, envp); } +WRAPPER_DEF(posix_spawn) -int posix_spawnp(pid_t * pid, const char * file, +WRAPPER(int, posix_spawnp)(pid_t * pid, const char * file, const posix_spawn_file_actions_t * file_actions, const posix_spawnattr_t * attrp, char * const argv[], char * const envp[]) @@ -192,43 +230,48 @@ int posix_spawnp(pid_t * pid, const char * file, int (*posix_spawnp_real) (pid_t *, const char *, const posix_spawn_file_actions_t *, const posix_spawnattr_t *, - char * const argv[], char * const envp[]) = dlsym(RTLD_NEXT, "posix_spawnp"); + char * const argv[], char * const envp[]) = LOOKUP_REAL(posix_spawnp); char buf[PATH_MAX]; return posix_spawnp_real(pid, rewrite(file, buf), file_actions, attrp, argv, envp); } +WRAPPER_DEF(posix_spawnp) -int execv(const char * path, char * const argv[]) +WRAPPER(int, execv)(const char * path, char * const argv[]) { - int (*execv_real) (const char * path, char * const argv[]) = dlsym(RTLD_NEXT, "execv"); + int (*execv_real) (const char * path, char * const argv[]) = LOOKUP_REAL(execv); char buf[PATH_MAX]; return execv_real(rewrite(path, buf), argv); } +WRAPPER_DEF(execv) -int execvp(const char * path, char * const argv[]) +WRAPPER(int, execvp)(const char * path, char * const argv[]) { - int (*_execvp) (const char *, char * const argv[]) = dlsym(RTLD_NEXT, "execvp"); + int (*_execvp) (const char *, char * const argv[]) = LOOKUP_REAL(execvp); char buf[PATH_MAX]; return _execvp(rewrite(path, buf), argv); } +WRAPPER_DEF(execvp) -int execve(const char * path, char * const argv[], char * const envp[]) +WRAPPER(int, execve)(const char * path, char * const argv[], char * const envp[]) { - int (*_execve) (const char *, char * const argv[], char * const envp[]) = dlsym(RTLD_NEXT, "execve"); + int (*_execve) (const char *, char * const argv[], char * const envp[]) = LOOKUP_REAL(execve); char buf[PATH_MAX]; return _execve(rewrite(path, buf), argv, envp); } +WRAPPER_DEF(execve) -DIR * opendir(const char * path) +WRAPPER(DIR *, opendir)(const char * path) { char buf[PATH_MAX]; - DIR * (*_opendir) (const char*) = dlsym(RTLD_NEXT, "opendir"); + DIR * (*_opendir) (const char*) = LOOKUP_REAL(opendir); return _opendir(rewrite(path, buf)); } +WRAPPER_DEF(opendir) #define SYSTEM_CMD_MAX 512 -char *replace_substring(char * source, char * buf, char * replace_string, char * start_ptr, char * suffix_ptr) { +static char * replace_substring(char * source, char * buf, char * replace_string, char * start_ptr, char * suffix_ptr) { char head[SYSTEM_CMD_MAX] = {0}; strncpy(head, source, start_ptr - source); @@ -241,7 +284,7 @@ char *replace_substring(char * source, char * buf, char * replace_string, char * return buf; } -char *replace_string(char * buf, char * from, char * to) { +static char * replace_string(char * buf, char * from, char * to) { int num_matches = 0; char * matches[SYSTEM_CMD_MAX]; int from_len = strlen(from); @@ -264,32 +307,48 @@ char *replace_string(char * buf, char * from, char * to) { return buf; } -void rewriteSystemCall(const char * command, char * buf) { - strcpy(buf, command); +static void rewriteSystemCall(const char * command, char * buf) { + char * p = buf; + + #ifdef __APPLE__ + // The dyld environment variable is not inherited by the subprocess spawned + // by system(), so this hack redefines it. + Dl_info info; + dladdr(&rewriteSystemCall, &info); + p = stpcpy(p, "export DYLD_INSERT_LIBRARIES="); + p = stpcpy(p, info.dli_fname); + p = stpcpy(p, ";"); + #endif + + stpcpy(p, command); + for (int n = 0; n < nrRedirects; ++n) { replace_string(buf, from[n], to[n]); } } -int system(const char *command) +WRAPPER(int, system)(const char *command) { - int (*_system) (const char*) = dlsym(RTLD_NEXT, "system"); + int (*_system) (const char*) = LOOKUP_REAL(system); char newCommand[SYSTEM_CMD_MAX]; rewriteSystemCall(command, newCommand); return _system(newCommand); } +WRAPPER_DEF(system) -int mkdir(const char *path, mode_t mode) +WRAPPER(int, mkdir)(const char *path, mode_t mode) { - int (*mkdir_real) (const char *path, mode_t mode) = dlsym(RTLD_NEXT, "mkdir"); + int (*mkdir_real) (const char *path, mode_t mode) = LOOKUP_REAL(mkdir); char buf[PATH_MAX]; return mkdir_real(rewrite(path, buf), mode); } +WRAPPER_DEF(mkdir) -int mkdirat(int dirfd, const char *path, mode_t mode) +WRAPPER(int, mkdirat)(int dirfd, const char *path, mode_t mode) { - int (*mkdirat_real) (int dirfd, const char *path, mode_t mode) = dlsym(RTLD_NEXT, "mkdirat"); + int (*mkdirat_real) (int dirfd, const char *path, mode_t mode) = LOOKUP_REAL(mkdirat); char buf[PATH_MAX]; return mkdirat_real(dirfd, rewrite(path, buf), mode); } +WRAPPER_DEF(mkdirat) diff --git a/pkgs/build-support/ocaml/default.nix b/pkgs/build-support/ocaml/default.nix index cd17eb688c2e..1fe99bb6320e 100644 --- a/pkgs/build-support/ocaml/default.nix +++ b/pkgs/build-support/ocaml/default.nix @@ -1,6 +1,6 @@ { lib, stdenv, writeText, ocaml, findlib, ocamlbuild, camlp4 }: -{ name, version, nativeBuildInputs ? [], +{ pname ? args.name, version, nativeBuildInputs ? [], createFindlibDestdir ? true, dontStrip ? true, minimumSupportedOcamlVersion ? null, @@ -17,13 +17,13 @@ in lib.versionOlder minimumSupportedOcamlVersion ocaml.version; stdenv.mkDerivation (args // { - name = "ocaml-${name}-${version}"; + name = "ocaml-${pname}-${version}"; nativeBuildInputs = [ ocaml findlib ocamlbuild camlp4 ] ++ nativeBuildInputs; setupHook = if setupHook == null && hasSharedObjects then writeText "setupHook.sh" '' - export CAML_LD_LIBRARY_PATH="''${CAML_LD_LIBRARY_PATH-}''${CAML_LD_LIBRARY_PATH:+:}''$1/lib/ocaml/${ocaml.version}/site-lib/${name}/" + export CAML_LD_LIBRARY_PATH="''${CAML_LD_LIBRARY_PATH-}''${CAML_LD_LIBRARY_PATH:+:}''$1/lib/ocaml/${ocaml.version}/site-lib/${pname}/" '' else setupHook; diff --git a/pkgs/build-support/rust/default.nix b/pkgs/build-support/rust/build-rust-package/default.nix similarity index 100% rename from pkgs/build-support/rust/default.nix rename to pkgs/build-support/rust/build-rust-package/default.nix diff --git a/pkgs/build-support/rust/patch-registry-deps/pkg-config b/pkgs/build-support/rust/build-rust-package/patch-registry-deps/pkg-config similarity index 100% rename from pkgs/build-support/rust/patch-registry-deps/pkg-config rename to pkgs/build-support/rust/build-rust-package/patch-registry-deps/pkg-config diff --git a/pkgs/build-support/rust/sysroot/Cargo.lock b/pkgs/build-support/rust/build-rust-package/sysroot/Cargo.lock similarity index 100% rename from pkgs/build-support/rust/sysroot/Cargo.lock rename to pkgs/build-support/rust/build-rust-package/sysroot/Cargo.lock diff --git a/pkgs/build-support/rust/sysroot/cargo.py b/pkgs/build-support/rust/build-rust-package/sysroot/cargo.py similarity index 100% rename from pkgs/build-support/rust/sysroot/cargo.py rename to pkgs/build-support/rust/build-rust-package/sysroot/cargo.py diff --git a/pkgs/build-support/rust/sysroot/default.nix b/pkgs/build-support/rust/build-rust-package/sysroot/default.nix similarity index 100% rename from pkgs/build-support/rust/sysroot/default.nix rename to pkgs/build-support/rust/build-rust-package/sysroot/default.nix diff --git a/pkgs/build-support/rust/sysroot/update-lockfile.sh b/pkgs/build-support/rust/build-rust-package/sysroot/update-lockfile.sh similarity index 100% rename from pkgs/build-support/rust/sysroot/update-lockfile.sh rename to pkgs/build-support/rust/build-rust-package/sysroot/update-lockfile.sh diff --git a/pkgs/build-support/rust/cargo-vendor-normalise.py b/pkgs/build-support/rust/fetch-cargo-tarball/cargo-vendor-normalise.py similarity index 100% rename from pkgs/build-support/rust/cargo-vendor-normalise.py rename to pkgs/build-support/rust/fetch-cargo-tarball/cargo-vendor-normalise.py diff --git a/pkgs/build-support/rust/fetchCargoTarball.nix b/pkgs/build-support/rust/fetch-cargo-tarball/default.nix similarity index 95% rename from pkgs/build-support/rust/fetchCargoTarball.nix rename to pkgs/build-support/rust/fetch-cargo-tarball/default.nix index c2be9aac82df..d36200aa5f90 100644 --- a/pkgs/build-support/rust/fetchCargoTarball.nix +++ b/pkgs/build-support/rust/fetch-cargo-tarball/default.nix @@ -9,8 +9,8 @@ let cargo-vendor-normalise = stdenv.mkDerivation { postFixup = "wrapPythonPrograms"; doInstallCheck = true; installCheckPhase = '' - # check that ./fetchcargo-default-config.toml is a fix point - reference=${./fetchcargo-default-config.toml} + # check that ../fetchcargo-default-config.toml is a fix point + reference=${../fetchcargo-default-config.toml} < $reference $out/bin/cargo-vendor-normalise > test; cmp test $reference ''; diff --git a/pkgs/build-support/rust/lib/default.nix b/pkgs/build-support/rust/lib/default.nix new file mode 100644 index 000000000000..24adcf2cb4e2 --- /dev/null +++ b/pkgs/build-support/rust/lib/default.nix @@ -0,0 +1,37 @@ +{ lib }: + +rec { + # https://doc.rust-lang.org/reference/conditional-compilation.html#target_arch + toTargetArch = platform: + if platform.isAarch32 then "arm" + else platform.parsed.cpu.name; + + # https://doc.rust-lang.org/reference/conditional-compilation.html#target_os + toTargetOs = platform: + if platform.isDarwin then "macos" + else platform.parsed.kernel.name; + + # Returns the name of the rust target, even if it is custom. Adjustments are + # because rust has slightly different naming conventions than we do. + toRustTarget = platform: let + inherit (platform.parsed) cpu vendor kernel abi; + cpu_ = platform.rustc.platform.arch or { + "armv7a" = "armv7"; + "armv7l" = "armv7"; + "armv6l" = "arm"; + "armv5tel" = "armv5te"; + "riscv64" = "riscv64gc"; + }.${cpu.name} or cpu.name; + vendor_ = platform.rustc.platform.vendor or { + "w64" = "pc"; + }.${vendor.name} or vendor.name; + in platform.rustc.config + or "${cpu_}-${vendor_}-${kernel.name}${lib.optionalString (abi.name != "unknown") "-${abi.name}"}"; + + # Returns the name of the rust target if it is standard, or the json file + # containing the custom target spec. + toRustTargetSpec = platform: + if (platform.rustc or {}) ? platform + then builtins.toFile (toRustTarget platform + ".json") (builtins.toJSON platform.rustc.platform) + else toRustTarget platform; +} diff --git a/pkgs/build-support/singularity-tools/default.nix b/pkgs/build-support/singularity-tools/default.nix index 318f5b430fef..a6a3cd001b4a 100644 --- a/pkgs/build-support/singularity-tools/default.nix +++ b/pkgs/build-support/singularity-tools/default.nix @@ -73,7 +73,7 @@ rec { ''} # Build /bin and copy across closure - mkdir -p bin nix/store + mkdir -p bin ./${builtins.storeDir} for f in $(cat $layerClosure) ; do cp -ar $f ./$f done diff --git a/pkgs/build-support/trivial-builders.nix b/pkgs/build-support/trivial-builders.nix index 58cdeb269d58..2966675be7ca 100644 --- a/pkgs/build-support/trivial-builders.nix +++ b/pkgs/build-support/trivial-builders.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, stdenvNoCC, lndir, runtimeShell }: +{ lib, stdenv, stdenvNoCC, lndir, runtimeShell, shellcheck }: rec { @@ -111,9 +111,10 @@ rec { , executable ? false # run chmod +x ? , destination ? "" # relative path appended to $out eg "/bin/foo" , checkPhase ? "" # syntax checks, e.g. for scripts + , meta ? { } }: runCommand name - { inherit text executable checkPhase; + { inherit text executable checkPhase meta; passAsFile = [ "text" ]; # Pointless to do this on a remote machine. preferLocalBuild = true; @@ -249,6 +250,60 @@ rec { ''; }; + /* + * Similar to writeShellScriptBin and writeScriptBin. + * Writes an executable Shell script to /nix/store/<store path>/bin/<name> and + * checks its syntax with shellcheck and the shell's -n option. + * Automatically includes sane set of shellopts (errexit, nounset, pipefail) + * and handles creation of PATH based on runtimeInputs + * + * Note that the checkPhase uses stdenv.shell for the test run of the script, + * while the generated shebang uses runtimeShell. If, for whatever reason, + * those were to mismatch you might lose fidelity in the default checks. + * + * Example: + * # Writes my-file to /nix/store/<store path>/bin/my-file and makes executable. + * writeShellApplication { + * name = "my-file"; + * runtimeInputs = [ curl w3m ]; + * text = '' + * curl -s 'https://nixos.org' | w3m -dump -T text/html + * ''; + * } + */ + writeShellApplication = + { name + , text + , runtimeInputs ? [ ] + , checkPhase ? null + }: + writeTextFile { + inherit name; + executable = true; + destination = "/bin/${name}"; + text = '' + #!${runtimeShell} + set -o errexit + set -o nounset + set -o pipefail + + export PATH="${lib.makeBinPath runtimeInputs}:$PATH" + + ${text} + ''; + + checkPhase = + if checkPhase == null then '' + runHook preCheck + ${stdenv.shell} -n $out/bin/${name} + ${shellcheck}/bin/shellcheck $out/bin/${name} + runHook postCheck + '' + else checkPhase; + + meta.mainProgram = name; + }; + # Create a C binary writeCBin = name: code: runCommandCC name diff --git a/pkgs/build-support/trivial-builders/test.sh b/pkgs/build-support/trivial-builders/test/references-test.sh similarity index 67% rename from pkgs/build-support/trivial-builders/test.sh rename to pkgs/build-support/trivial-builders/test/references-test.sh index b7c4726a9be0..473ca6e10769 100755 --- a/pkgs/build-support/trivial-builders/test.sh +++ b/pkgs/build-support/trivial-builders/test/references-test.sh @@ -8,11 +8,11 @@ # # This file can be run independently (quick): # -# $ pkgs/build-support/trivial-builders/test.sh +# $ pkgs/build-support/trivial-builders/references-test.sh # # or in the build sandbox with a ~20s VM overhead # -# $ nix-build -A tests.trivial-builders +# $ nix-build -A tests.trivial-builders.references # # -------------------------------------------------------------------------- # @@ -26,9 +26,15 @@ set -euo pipefail cd "$(dirname ${BASH_SOURCE[0]})" # nixpkgs root if [[ -z ${SAMPLE:-} ]]; then - sample=( `nix-build test/sample.nix` ) - directRefs=( `nix-build test/invoke-writeDirectReferencesToFile.nix` ) - references=( `nix-build test/invoke-writeReferencesToFile.nix` ) + echo "Running the script directly is currently not supported." + echo "If you need to iterate, remove the raw path, which is not returned by nix-build." + exit 1 +# sample=( `nix-build --no-out-link sample.nix` ) +# directRefs=( `nix-build --no-out-link invoke-writeDirectReferencesToFile.nix` ) +# references=( `nix-build --no-out-link invoke-writeReferencesToFile.nix` ) +# echo "sample: ${#sample[@]}" +# echo "direct: ${#directRefs[@]}" +# echo "indirect: ${#references[@]}" else # Injected by Nix (to avoid evaluating in a derivation) # turn them into arrays diff --git a/pkgs/build-support/trivial-builders/test.nix b/pkgs/build-support/trivial-builders/test/references.nix similarity index 55% rename from pkgs/build-support/trivial-builders/test.nix rename to pkgs/build-support/trivial-builders/test/references.nix index 420a0fd0114d..a2bee51b13e7 100644 --- a/pkgs/build-support/trivial-builders/test.nix +++ b/pkgs/build-support/trivial-builders/test/references.nix @@ -8,11 +8,11 @@ # # This file can be run independently (quick): # -# $ pkgs/build-support/trivial-builders/test.sh +# $ pkgs/build-support/trivial-builders/references-test.sh # # or in the build sandbox with a ~20s VM overhead # -# $ nix-build -A tests.trivial-builders +# $ nix-build -A tests.trivial-builders.references # # -------------------------------------------------------------------------- # @@ -33,30 +33,15 @@ nixosTest { builtins.toJSON [hello figlet stdenvNoCC] ); environment.variables = { - SAMPLE = invokeSamples ./test/sample.nix; - REFERENCES = invokeSamples ./test/invoke-writeReferencesToFile.nix; - DIRECT_REFS = invokeSamples ./test/invoke-writeDirectReferencesToFile.nix; + SAMPLE = invokeSamples ./sample.nix; + REFERENCES = invokeSamples ./invoke-writeReferencesToFile.nix; + DIRECT_REFS = invokeSamples ./invoke-writeDirectReferencesToFile.nix; }; }; testScript = - let - sample = import ./test/sample.nix { inherit pkgs; }; - samplePaths = lib.unique (lib.attrValues sample); - sampleText = pkgs.writeText "sample-text" (lib.concatStringsSep "\n" samplePaths); - stringReferencesText = - pkgs.writeStringReferencesToFile - ((lib.concatMapStringsSep "fillertext" - (d: "${d}") - (lib.attrValues sample)) + '' - STORE=${builtins.storeDir};\nsystemctl start bar-foo.service - ''); - in '' + '' machine.succeed(""" - ${./test.sh} 2>/dev/console - """) - machine.succeed(""" - echo >&2 Testing string references... - diff -U3 <(sort ${stringReferencesText}) <(sort ${sampleText}) + ${./references-test.sh} 2>/dev/console """) ''; meta = { diff --git a/pkgs/build-support/trivial-builders/test/sample.nix b/pkgs/build-support/trivial-builders/test/sample.nix index 807594d74bb3..a4eedce8417e 100644 --- a/pkgs/build-support/trivial-builders/test/sample.nix +++ b/pkgs/build-support/trivial-builders/test/sample.nix @@ -1,10 +1,11 @@ -{ pkgs ? import ../../../.. { config = {}; overlays = []; } }: +{ pkgs ? import ../../../.. { config = { }; overlays = [ ]; } }: let inherit (pkgs) figlet zlib hello writeText + runCommand ; in { @@ -17,7 +18,10 @@ in helloRef = writeText "hi" "hello ${hello}"; helloRefDup = writeText "hi" "hello ${hello}"; path = ./invoke-writeReferencesToFile.nix; + pathLike.outPath = ./invoke-writeReferencesToFile.nix; helloFigletRef = writeText "hi" "hello ${hello} ${figlet}"; + selfRef = runCommand "self-ref-1" {} "echo $out >$out"; + selfRef2 = runCommand "self-ref-2" {} ''echo "${figlet}, $out" >$out''; inherit (pkgs) emptyFile emptyDirectory diff --git a/pkgs/build-support/trivial-builders/test/writeStringReferencesToFile.nix b/pkgs/build-support/trivial-builders/test/writeStringReferencesToFile.nix new file mode 100644 index 000000000000..b93b43b74aa4 --- /dev/null +++ b/pkgs/build-support/trivial-builders/test/writeStringReferencesToFile.nix @@ -0,0 +1,18 @@ +{ callPackage, lib, pkgs, runCommand, writeText, writeStringReferencesToFile }: +let + sample = import ./sample.nix { inherit pkgs; }; + samplePaths = lib.unique (lib.attrValues sample); + stri = x: "${x}"; + sampleText = writeText "sample-text" (lib.concatStringsSep "\n" (lib.unique (map stri samplePaths))); + stringReferencesText = + writeStringReferencesToFile + ((lib.concatMapStringsSep "fillertext" + stri + (lib.attrValues sample)) + '' + STORE=${builtins.storeDir};\nsystemctl start bar-foo.service + ''); +in +runCommand "test-writeStringReferencesToFile" { } '' + diff -U3 <(sort ${stringReferencesText}) <(sort ${sampleText}) + touch $out +'' diff --git a/pkgs/build-support/vm/default.nix b/pkgs/build-support/vm/default.nix index d2aeb784e7fd..a6633d11286f 100644 --- a/pkgs/build-support/vm/default.nix +++ b/pkgs/build-support/vm/default.nix @@ -390,7 +390,7 @@ rec { diskImage=$(pwd)/disk-image.qcow2 origImage=${attrs.diskImage} if test -d "$origImage"; then origImage="$origImage/disk-image.qcow2"; fi - ${qemu}/bin/qemu-img create -b "$origImage" -f qcow2 $diskImage + ${qemu}/bin/qemu-img create -F ${attrs.diskImageFormat} -b "$origImage" -f qcow2 $diskImage ''; /* Inside the VM, run the stdenv setup script normally, but at the diff --git a/pkgs/build-support/vm/test.nix b/pkgs/build-support/vm/test.nix index 1a29554ee80c..384c92088083 100644 --- a/pkgs/build-support/vm/test.nix +++ b/pkgs/build-support/vm/test.nix @@ -28,10 +28,10 @@ with vmTools; buildInDebian = runInLinuxImage (stdenv.mkDerivation { name = "deb-compile"; src = patchelf.src; - diskImage = diskImages.ubuntu1204i386; + diskImage = diskImages.ubuntu1804i386; + diskImageFormat = "qcow2"; memSize = 512; - prePhases = [ sysInfoPhase ]; - sysInfoPhase = '' + postHook = '' dpkg-query --list ''; }); diff --git a/pkgs/build-support/writers/default.nix b/pkgs/build-support/writers/default.nix index 216e41f6d7ec..4b4d4bb203e0 100644 --- a/pkgs/build-support/writers/default.nix +++ b/pkgs/build-support/writers/default.nix @@ -1,4 +1,4 @@ -{ pkgs, buildPackages, lib, gawk, gnused, gixy }: +{ pkgs, buildPackages, lib, stdenv, libiconv, gawk, gnused, gixy }: with lib; rec { @@ -150,10 +150,13 @@ rec { rustcArgs ? [], strip ? true }: + let + darwinArgs = lib.optionals stdenv.isDarwin [ "-L${lib.getLib libiconv}/lib" ]; + in makeBinWriter { compileScript = '' cp "$contentPath" tmp.rs - PATH=${makeBinPath [pkgs.gcc]} ${lib.getBin rustc}/bin/rustc ${lib.escapeShellArgs rustcArgs} -o "$out" tmp.rs + PATH=${makeBinPath [pkgs.gcc]} ${lib.getBin rustc}/bin/rustc ${lib.escapeShellArgs rustcArgs} ${lib.escapeShellArgs darwinArgs} -o "$out" tmp.rs ''; inherit strip; } name; diff --git a/pkgs/data/documentation/execline-man-pages/default.nix b/pkgs/data/documentation/execline-man-pages/default.nix index 1e4a34cba882..ed4389cad6c9 100644 --- a/pkgs/data/documentation/execline-man-pages/default.nix +++ b/pkgs/data/documentation/execline-man-pages/default.nix @@ -2,8 +2,8 @@ buildManPages { pname = "execline-man-pages"; - version = "2.8.1.0.2"; - sha256 = "1fl3pyjh9328l1h2b6s08j048jl4pfyyc24mjs45qx545kcp65q4"; + version = "2.8.1.0.3"; + sha256 = "1n7c75lmyrjzzcbwjl6fxhfs4k29qlr66r1q35799h942cn4li7v"; description = "Port of the documentation for the execline suite to mdoc"; maintainers = [ lib.maintainers.sternenseemann ]; } diff --git a/pkgs/data/fonts/arphic/default.nix b/pkgs/data/fonts/arphic/default.nix index 714af585d255..02e2a2de417b 100644 --- a/pkgs/data/fonts/arphic/default.nix +++ b/pkgs/data/fonts/arphic/default.nix @@ -6,7 +6,7 @@ in { arphic-ukai = fetchzip { name = "arphic-ukai-${version}"; - url = "http://archive.ubuntu.com/ubuntu/pool/main/f/fonts-arphic-ukai/fonts-arphic-ukai_${version}.orig.tar.bz2"; + url = "mirror://ubuntu/pool/main/f/fonts-arphic-ukai/fonts-arphic-ukai_${version}.orig.tar.bz2"; postFetch = '' tar -xjvf $downloadedFile --strip-components=1 @@ -31,7 +31,7 @@ in { arphic-uming = fetchzip { name = "arphic-uming-${version}"; - url = "http://archive.ubuntu.com/ubuntu/pool/main/f/fonts-arphic-uming/fonts-arphic-uming_${version}.orig.tar.bz2"; + url = "mirror://ubuntu/pool/main/f/fonts-arphic-uming/fonts-arphic-uming_${version}.orig.tar.bz2"; postFetch = '' tar -xjvf $downloadedFile --strip-components=1 diff --git a/pkgs/data/fonts/noto-fonts/default.nix b/pkgs/data/fonts/noto-fonts/default.nix index 27e414b12e2a..88c17e8f4a31 100644 --- a/pkgs/data/fonts/noto-fonts/default.nix +++ b/pkgs/data/fonts/noto-fonts/default.nix @@ -110,20 +110,25 @@ in }; noto-fonts-emoji = let - version = "2.028"; + version = "2.034"; emojiPythonEnv = python3.withPackages (p: with p; [ fonttools nototools ]); in stdenv.mkDerivation { pname = "noto-fonts-emoji"; - version = builtins.replaceStrings [ "_" ] [ "." ] version; + inherit version; src = fetchFromGitHub { owner = "googlefonts"; repo = "noto-emoji"; rev = "v${version}"; - sha256 = "0dy7px7wfl6bqkfzz82jm4gvbjp338ddsx0mwfl6m7z48l7ng4v6"; + sha256 = "1d6zzk0ii43iqfnjbldwp8sasyx99lbjp1nfgqjla7ixld6yp98l"; }; + makeFlags = [ + # TODO(@sternenseemann): remove if afdko is new enough to know about Unicode 14.0 + "BYPASS_SEQUENCE_CHECK=True" + ]; + nativeBuildInputs = [ cairo imagemagick @@ -166,31 +171,32 @@ in homepage = "https://github.com/googlefonts/noto-emoji"; license = with licenses; [ ofl asl20 ]; platforms = platforms.all; - maintainers = with maintainers; [ mathnerd314 ]; + maintainers = with maintainers; [ mathnerd314 sternenseemann ]; }; }; - noto-fonts-emoji-blob-bin = stdenv.mkDerivation rec { - pname = "noto-fonts-emoji-blob-bin"; - version = "2019-06-14-Emoji-12"; - - src = fetchurl { + noto-fonts-emoji-blob-bin = + let + pname = "noto-fonts-emoji-blob-bin"; + version = "14.0.1"; + in + fetchurl { + name = "${pname}-${version}"; url = "https://github.com/C1710/blobmoji/releases/download/v${version}/Blobmoji.ttf"; - sha256 = "0snvymglmvpnfgsriw2cnnqm0f4llav0jvzir6mpd17mqqhhabbh"; + sha256 = "sha256-wSH9kRJ8y2i5ZDqzeT96dJcEJnHDSpU8bOhmxaT+UCg="; + + downloadToTemp = true; + recursiveHash = true; + postFetch = '' + install -Dm 444 $downloadedFile $out/share/fonts/blobmoji/Blobmoji.ttf + ''; + + meta = with lib; { + description = "Noto Emoji with extended Blob support"; + homepage = "https://github.com/C1710/blobmoji"; + license = with licenses; [ ofl asl20 ]; + platforms = platforms.all; + maintainers = with maintainers; [ rileyinman jk ]; + }; }; - - dontUnpack = true; - - installPhase = '' - install -D $src $out/share/fonts/blobmoji/Blobmoji.ttf - ''; - - meta = with lib; { - description = "Noto Emoji with extended Blob support"; - homepage = "https://github.com/C1710/blobmoji"; - license = with licenses; [ ofl asl20 ]; - platforms = platforms.all; - maintainers = with maintainers; [ rileyinman ]; - }; - }; } diff --git a/pkgs/data/fonts/noto-fonts/tools.nix b/pkgs/data/fonts/noto-fonts/tools.nix index 791aa6534d28..7d850ef71667 100644 --- a/pkgs/data/fonts/noto-fonts/tools.nix +++ b/pkgs/data/fonts/noto-fonts/tools.nix @@ -7,7 +7,7 @@ buildPythonPackage rec { pname = "nototools"; - version = "0.2.13"; + version = "0.2.16"; disabled = pythonOlder "3.6"; @@ -15,7 +15,7 @@ buildPythonPackage rec { owner = "googlefonts"; repo = "nototools"; rev = "v${version}"; - sha256 = "0ggp65xgkf9y7jamncm65lkm84wapsa47abf133pcb702875v8jz"; + sha256 = "14rrdamkmhrykff8ln07fq9cm8zwj3k113lzwjcy0lgz23g51jyl"; }; postPatch = '' diff --git a/pkgs/data/fonts/public-sans/default.nix b/pkgs/data/fonts/public-sans/default.nix index 7d7a81ec7e73..88da0cb5d558 100644 --- a/pkgs/data/fonts/public-sans/default.nix +++ b/pkgs/data/fonts/public-sans/default.nix @@ -1,7 +1,7 @@ { lib, fetchzip }: let - version = "1.008"; + version = "2.000"; in fetchzip { name = "public-sans-${version}"; @@ -9,14 +9,11 @@ in fetchzip { postFetch = '' mkdir -p $out/share/fonts - unzip -j $downloadedFile binaries/otf/\*.otf -d $out/share/fonts/opentype - unzip -j $downloadedFile binaries/variable/\*.ttf -d $out/share/fonts/truetype - unzip -j $downloadedFile binaries/webfonts/\*.ttf -d $out/share/fonts/truetype - unzip -j $downloadedFile binaries/webfonts/\*.woff -d $out/share/fonts/woff - unzip -j $downloadedFile binaries/webfonts/\*.woff2 -d $out/share/fonts/woff2 + unzip -j $downloadedFile \*.otf -d $out/share/fonts/opentype + unzip -j $downloadedFile \*.ttf -d $out/share/fonts/truetype ''; - sha256 = "1s4xmliri3r1gcn1ws3wa6davj6giliqjdbcv0bh9ryg3dfpjz74"; + sha256 = "0r34h9mim5c3h48cpq2m2ixkdqhv3i594pip10pavkmskldpbha5"; meta = with lib; { description = "A strong, neutral, principles-driven, open source typeface for text or display"; diff --git a/pkgs/data/fonts/sarasa-gothic/default.nix b/pkgs/data/fonts/sarasa-gothic/default.nix index 00030ad57423..00caa09a00b4 100644 --- a/pkgs/data/fonts/sarasa-gothic/default.nix +++ b/pkgs/data/fonts/sarasa-gothic/default.nix @@ -5,8 +5,10 @@ let in fetchurl { name = "sarasa-gothic-${version}"; - url = "https://github.com/be5invis/Sarasa-Gothic/releases/download/v${version}/sarasa-gothic-ttf-${version}.7z"; - sha256 = "094sl6gklrdv9pk4r6451dvz0fjyjmwys7i81qrz4ik1km5dfq9b"; + # Use the 'ttc' files here for a smaller closure size. + # (Using 'ttf' files gives a closure size about 15x larger, as of November 2021.) + url = "https://github.com/be5invis/Sarasa-Gothic/releases/download/v${version}/sarasa-gothic-ttc-${version}.7z"; + sha256 = "0fzbqj32jiffqsr4s0i8fignk01v5d1rik6ldg2q7dgl1298sgk8"; recursiveHash = true; downloadToTemp = true; @@ -21,7 +23,6 @@ in fetchurl { homepage = "https://github.com/be5invis/Sarasa-Gothic"; license = licenses.ofl; maintainers = [ maintainers.ChengCat ]; - hydraPlatforms = [ ]; # disabled from hydra because it's so big platforms = platforms.all; }; } diff --git a/pkgs/data/fonts/terminus-font/SOURCE_DATE_EPOCH-for-otb.patch b/pkgs/data/fonts/terminus-font/SOURCE_DATE_EPOCH-for-otb.patch new file mode 100644 index 000000000000..6154b8014759 --- /dev/null +++ b/pkgs/data/fonts/terminus-font/SOURCE_DATE_EPOCH-for-otb.patch @@ -0,0 +1,83 @@ +From 2f935030ddb834426da1180b768e6b1e71d0824a Mon Sep 17 00:00:00 2001 +From: Sergei Trofimovich <slyich@gmail.com> +Date: Sat, 9 Oct 2021 10:17:05 +0100 +Subject: [PATCH] terminus-font: bin/otb1cli.py: add support for + SOURCE_DATE_EPOCH + +NixOS (and a few other distributions) strive for bit-reproducible +builds. terminus-font-4.49.1 fails reproducibility test due to +timestamp embedding into .otb files. diffoscope says that two +consecutive builds differ at file creation timestamp: + + $ diffoscope '...-terminus-font-4.49.1' '...-terminus-font-4.49.1.check' + - ...-terminus-font-4.49.1/share/fonts/terminus/ter-u12b.otb + + ...-terminus-font-4.49.1.check/share/fonts/terminus/ter-u12b.otb + showttf {} + @@ -1,32 +1,32 @@ + version=1, numtables=12, searchRange=128 entrySel=3 rangeshift=64 + File Checksum =b1b0afba (should be 0xb1b0afba), diff=0 + EBDT checksum=5263c696 actual=5263c696 diff=0 offset=204 len=23056 + EBLC checksum=350f1222 actual=350f1222 diff=0 offset=23260 len=84 + OS/2 checksum=8b4939dd actual=8b4939dd diff=0 offset=23344 len=96 + cmap checksum=da4e56f3 actual=da4e56f3 diff=0 offset=23440 len=1220 + glyf checksum=00000000 actual=00000000 diff=0 offset=24660 len=0 + -head checksum=1cb1374e actual=9db28c18 diff=8103bb56 offset=24660 len=54 + +head checksum=1cb528c7 actual=9dae9a9f diff=811bb258 offset=24660 len=54 + hhea checksum=055706a2 actual=055706a2 diff=0 offset=24716 len=36 + hmtx checksum=98000000 actual=98000000 diff=0 offset=24752 len=5424 + loca checksum=00000000 actual=00000000 diff=0 offset=30176 len=2714 + maxp checksum=058e0003 actual=058e0003 diff=0 offset=32892 len=32 + name checksum=208d345e actual=208d345e diff=0 offset=32924 len=448 + post checksum=ffd80056 actual=ffd80056 diff=0 offset=33372 len=32 + + HEAD table (at 24660) + Version=1 + fontRevision=1 + - checksumAdj=810154ca + + checksumAdj=80f971d8 + magicNumber=5f0f3cf5 (0x5f0f3cf5, diff=0) + flags=20b baseline_at_0 lsb_at_0 ppem_to_int + unitsPerEm=1024 + create[0]=0 + - create[1]=dd831dec + - File created: Wed Oct 6 09:33:32 2021 + + create[1]=dd870f65 + + File created: Sat Oct 9 09:20:37 2021 + +The change uses SOURCE_DATE_EPOCH environment variable to override +on-disk timestamps: + https://reproducible-builds.org/docs/source-date-epoch/ +--- + bin/otb1cli.py | 9 +++++++-- + 1 file changed, 7 insertions(+), 2 deletions(-) + +diff --git a/bin/otb1cli.py b/bin/otb1cli.py +index 92ab07b..847b570 100644 +--- a/bin/otb1cli.py ++++ b/bin/otb1cli.py +@@ -17,6 +17,7 @@ + # + + from datetime import datetime, timezone ++import os + + import fnutil + import fncli +@@ -81,8 +82,12 @@ def main_program(nonopt, parsed): + try: + stat = ifs.fstat() + if stat: +- parsed.created = datetime.fromtimestamp(stat.st_ctime, timezone.utc) +- parsed.modified = datetime.fromtimestamp(stat.st_mtime, timezone.utc) ++ # Allow deterministic builds when SOURCE_DATE_EPOCH is set: ++ # https://reproducible-builds.org/docs/source-date-epoch/ ++ ct = int(os.environ.get('SOURCE_DATE_EPOCH', stat.st_ctime)) ++ mt = int(os.environ.get('SOURCE_DATE_EPOCH', stat.st_mtime)) ++ parsed.created = datetime.fromtimestamp(ct, timezone.utc) ++ parsed.modified = datetime.fromtimestamp(mt, timezone.utc) + except Exception as ex: + fnutil.warning(ifs.location(), str(ex)) + +-- +2.33.0 + diff --git a/pkgs/data/fonts/terminus-font/default.nix b/pkgs/data/fonts/terminus-font/default.nix index fca357706a60..9ccf0371f192 100644 --- a/pkgs/data/fonts/terminus-font/default.nix +++ b/pkgs/data/fonts/terminus-font/default.nix @@ -1,21 +1,20 @@ { lib, stdenv, fetchurl, python3 -, libfaketime, fonttosfnt , bdftopcf, mkfontscale }: stdenv.mkDerivation rec { pname = "terminus-font"; - version = "4.48"; # set here for use in URL below + version = "4.49.1"; src = fetchurl { - url = "mirror://sourceforge/project/${pname}/${pname}-${version}/${pname}-${version}.tar.gz"; - sha256 = "1bwlkj39rqbyq57v5yssayav6hzv1n11b9ml2s0dpiyfsn6rqy9l"; + url = "mirror://sourceforge/project/${pname}/${pname}-${lib.versions.majorMinor version}/${pname}-${version}.tar.gz"; + sha256 = "0yggffiplk22lgqklfmd2c0rw8gwchynjh5kz4bz8yv2h6vw2qfr"; }; + patches = [ ./SOURCE_DATE_EPOCH-for-otb.patch ]; + nativeBuildInputs = - [ python3 bdftopcf libfaketime - fonttosfnt mkfontscale - ]; + [ python3 bdftopcf mkfontscale ]; enableParallelBuilding = true; @@ -24,22 +23,7 @@ stdenv.mkDerivation rec { substituteInPlace Makefile --replace 'gzip' 'gzip -n' ''; - postBuild = '' - # convert unicode bdf fonts to otb - for i in *.bdf; do - name=$(basename $i .bdf) - faketime -f "1970-01-01 00:00:01" \ - fonttosfnt -v -o "$name.otb" "$i" - done - ''; - - postInstall = '' - # install otb fonts (for GTK applications) - install -m 644 -D *.otb -t "$out/share/fonts/misc"; - mkfontdir "$out/share/fonts/misc" - ''; - - installTargets = [ "install" "fontdir" ]; + installTargets = [ "install" "install-otb" "fontdir" ]; meta = with lib; { description = "A clean fixed width font"; diff --git a/pkgs/data/fonts/ultimate-oldschool-pc-font-pack/default.nix b/pkgs/data/fonts/ultimate-oldschool-pc-font-pack/default.nix index d34ebaf6d8f3..4733bcf04e72 100644 --- a/pkgs/data/fonts/ultimate-oldschool-pc-font-pack/default.nix +++ b/pkgs/data/fonts/ultimate-oldschool-pc-font-pack/default.nix @@ -1,12 +1,12 @@ { lib, fetchzip }: let - version = "2.0"; + version = "2.2"; in fetchzip { name = "ultimate-oldschool-pc-font-pack-${version}"; - url = "https://int10h.org/oldschool-pc-fonts/download/oldschool_pc_font_pack_v${version}_ttf.zip"; - sha256 = "0z0fw6ni7iq806y4m83xrfx46r14xxxql09ch2gxjqi062awqyh8"; + url = "https://int10h.org/oldschool-pc-fonts/download/oldschool_pc_font_pack_v${version}_linux.zip"; + sha256 = "sha256-BOA2fMa2KT3Bkpvj/0DzrzuZbl3RARvNn4qbI/+dApU="; postFetch= '' mkdir -p $out/share/fonts/truetype diff --git a/pkgs/data/fonts/vista-fonts-cht/default.nix b/pkgs/data/fonts/vista-fonts-cht/default.nix index 264d5a41bf48..78271e2f1e93 100644 --- a/pkgs/data/fonts/vista-fonts-cht/default.nix +++ b/pkgs/data/fonts/vista-fonts-cht/default.nix @@ -5,7 +5,7 @@ stdenvNoCC.mkDerivation { version = "1"; src = fetchurl { - url = https://download.microsoft.com/download/7/6/b/76bd7a77-be02-47f3-8472-fa1de7eda62f/VistaFont_CHT.EXE; + url = "https://download.microsoft.com/download/7/6/b/76bd7a77-be02-47f3-8472-fa1de7eda62f/VistaFont_CHT.EXE"; sha256 = "sha256-fSnbbxlMPzbhFSQyKxQaS5paiWji8njK7tS8Eppsj6g="; }; diff --git a/pkgs/data/fonts/vista-fonts/default.nix b/pkgs/data/fonts/vista-fonts/default.nix index ca2ae302b3ee..fa8308b8c972 100644 --- a/pkgs/data/fonts/vista-fonts/default.nix +++ b/pkgs/data/fonts/vista-fonts/default.nix @@ -14,11 +14,12 @@ stdenvNoCC.mkDerivation { unpackPhase = '' cabextract --lowercase --filter ppviewer.cab $src cabextract --lowercase --filter '*.TTF' ppviewer.cab + cabextract --lowercase --filter '*.TTC' ppviewer.cab ''; installPhase = '' mkdir -p $out/share/fonts/truetype - cp *.ttf $out/share/fonts/truetype + cp *.ttf *.ttc $out/share/fonts/truetype # Set up no-op font configs to override any aliases set up by # other packages. diff --git a/pkgs/data/icons/kora-icon-theme/default.nix b/pkgs/data/icons/kora-icon-theme/default.nix index 5c8f3d15b663..89fd80c468e5 100644 --- a/pkgs/data/icons/kora-icon-theme/default.nix +++ b/pkgs/data/icons/kora-icon-theme/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "kora-icon-theme"; - version = "1.4.5"; + version = "1.4.7"; src = fetchFromGitHub { owner = "bikass"; repo = "kora"; rev = "v${version}"; - sha256 = "sha256-5tXXAfGY5JQ5RiKayUuQJDgX6sPHRi8Hy2ht/Hl0hdo="; + sha256 = "sha256-Ol4DrQJmQT/LIU5qWJJEm6od7e29h7g913YTFQjudBQ="; }; nativeBuildInputs = [ diff --git a/pkgs/data/icons/tela-icon-theme/default.nix b/pkgs/data/icons/tela-icon-theme/default.nix index 31745f9b2f15..69f0337fcaa6 100644 --- a/pkgs/data/icons/tela-icon-theme/default.nix +++ b/pkgs/data/icons/tela-icon-theme/default.nix @@ -2,13 +2,13 @@ stdenvNoCC.mkDerivation rec { pname = "tela-icon-theme"; - version = "2021-10-08"; + version = "2021-11-05"; src = fetchFromGitHub { owner = "vinceliuice"; repo = pname; rev = version; - sha256 = "sha256-4h6c7asjUC7pqi4GkxCN13LOpVVbjBdvjUMN7sXAlNE="; + sha256 = "sha256-mvkgHBdZm6vF+/DS3CRLl1m14U0Lj4Xtz4J/vpJUTQM="; }; nativeBuildInputs = [ gtk3 jdupes ]; diff --git a/pkgs/data/icons/vimix-icon-theme/default.nix b/pkgs/data/icons/vimix-icon-theme/default.nix new file mode 100644 index 000000000000..502a8023c9bd --- /dev/null +++ b/pkgs/data/icons/vimix-icon-theme/default.nix @@ -0,0 +1,40 @@ +{ lib, stdenv, fetchFromGitHub, gtk3, hicolor-icon-theme, jdupes }: + +stdenv.mkDerivation rec { + pname = "vimix-icon-theme"; + version = "2021-11-09"; + + src = fetchFromGitHub { + owner = "vinceliuice"; + repo = pname; + rev = version; + sha256 = "1ali128027yw5kllip7p32c92pby5gaqs0i393m3bp69547np1d4"; + }; + + nativeBuildInputs = [ gtk3 jdupes ]; + + propagatedBuildInputs = [ hicolor-icon-theme ]; + + dontDropIconThemeCache = true; + + # These fixup steps are slow and unnecessary for this package + dontPatchELF = true; + dontRewriteSymlinks = true; + + installPhase = '' + runHook preInstall + patchShebangs install.sh + ./install.sh -a -d $out/share/icons + # replace duplicate files with symlinks + jdupes -l -r $out/share/icons + runHook postInstall + ''; + + meta = with lib; { + description = "A Material Design icon theme based on Paper icon theme"; + homepage = "https://github.com/vinceliuice/vimix-icon-theme"; + license = with licenses; [ cc-by-sa-40 ]; + platforms = platforms.linux; + maintainers = with maintainers; [ romildo ]; + }; +} diff --git a/pkgs/data/icons/whitesur-icon-theme/default.nix b/pkgs/data/icons/whitesur-icon-theme/default.nix index 157ff6d3eac9..27465b828a61 100644 --- a/pkgs/data/icons/whitesur-icon-theme/default.nix +++ b/pkgs/data/icons/whitesur-icon-theme/default.nix @@ -2,13 +2,13 @@ stdenvNoCC.mkDerivation rec { pname = "Whitesur-icon-theme"; - version = "2021-10-13"; + version = "2021-11-08"; src = fetchFromGitHub { owner = "vinceliuice"; repo = pname; rev = version; - sha256 = "BP5hGi3G9zNUSfeCbwYUvd3jMcWhstXiDeZCJ6Hgey8="; + sha256 = "LZ0GLJFUUvzsPhU2sBkfy5mPpQHuPzYhbumwFKnogoA="; }; nativeBuildInputs = [ gtk3 ]; diff --git a/pkgs/data/misc/hackage/pin.json b/pkgs/data/misc/hackage/pin.json index fb0b6cd6156b..996e993d8003 100644 --- a/pkgs/data/misc/hackage/pin.json +++ b/pkgs/data/misc/hackage/pin.json @@ -1,6 +1,6 @@ { - "commit": "b60d5f4b773d16857c105718faad9699e145edcd", - "url": "https://github.com/commercialhaskell/all-cabal-hashes/archive/b60d5f4b773d16857c105718faad9699e145edcd.tar.gz", - "sha256": "19avxynbjhkhvjy5kcxgd3fp0b2nczsk213s1za488r6kksj90f5", - "msg": "Update from Hackage at 2021-10-18T14:27:09Z" + "commit": "da98cdcb5ec11aea3b1979174b3b1cab24014908", + "url": "https://github.com/commercialhaskell/all-cabal-hashes/archive/da98cdcb5ec11aea3b1979174b3b1cab24014908.tar.gz", + "sha256": "14qdmvlqkaixv331g1lfr8hghrvzdx45xhn69fz1g7zhv4w88jix", + "msg": "Update from Hackage at 2021-11-05T06:34:09Z" } diff --git a/pkgs/data/misc/v2ray-domain-list-community/default.nix b/pkgs/data/misc/v2ray-domain-list-community/default.nix new file mode 100644 index 000000000000..bff703563d4b --- /dev/null +++ b/pkgs/data/misc/v2ray-domain-list-community/default.nix @@ -0,0 +1,35 @@ +{ stdenv, buildGoModule, fetchFromGitHub, lib }: + +let + generator = buildGoModule rec { + pname = "v2ray-domain-list-community"; + version = "20211103073737"; + src = fetchFromGitHub { + owner = "v2fly"; + repo = "domain-list-community"; + rev = version; + sha256 = "sha256-NYgEXbow16w+XMRjbQG1cIn/BjPbbcj+uzb4kcVR6eI="; + }; + vendorSha256 = "sha256-JuLU9v1ukVfAEtz07tGk66st1+sO4SBz83BlK3IPQwU="; + meta = with lib; { + description = "community managed domain list"; + homepage = "https://github.com/v2fly/domain-list-community"; + license = licenses.mit; + maintainers = with maintainers; [ nickcao ]; + }; + }; +in +stdenv.mkDerivation { + inherit (generator) pname version src meta; + buildPhase = '' + runHook preBuild + ${generator}/bin/domain-list-community -datapath $src/data --exportlists=category-ads-all,tld-cn,cn,tld-\!cn,geolocation-\!cn,apple,icloud + runHook postBuild + ''; + installPhase = '' + runHook preInstall + install -Dm644 dlc.dat $out/share/v2ray/geosite.dat + runHook postInstall + ''; + passthru.generator = generator; +} diff --git a/pkgs/data/misc/wireless-regdb/default.nix b/pkgs/data/misc/wireless-regdb/default.nix index d23733fb0312..2a729c7aa2fc 100644 --- a/pkgs/data/misc/wireless-regdb/default.nix +++ b/pkgs/data/misc/wireless-regdb/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "wireless-regdb"; - version = "2021.07.14"; + version = "2021.08.28"; src = fetchurl { url = "https://www.kernel.org/pub/software/network/${pname}/${pname}-${version}.tar.xz"; - sha256 = "sha256-Li3SFqXxoxC4SXdK9j5jCdlMIgfDR3GlNMR64YsWJ0I="; + sha256 = "sha256-z/NwxBDR5tMWrgp/qKxieP3x78pdPWZKynz9Kq+lREY="; }; dontBuild = true; diff --git a/pkgs/data/themes/ayu-theme-gtk/default.nix b/pkgs/data/themes/ayu-theme-gtk/default.nix new file mode 100644 index 000000000000..2e8453b097dd --- /dev/null +++ b/pkgs/data/themes/ayu-theme-gtk/default.nix @@ -0,0 +1,68 @@ +{ stdenv +, autoreconfHook +, fetchFromGitHub +, gnome +, gtk-engine-murrine +, gtk3 +, inkscape +, lib +, optipng +, pkg-config +, sassc +}: + +stdenv.mkDerivation rec { + pname = "ayu-theme-gtk"; + version = "unstable-2017-05-12"; + + src = fetchFromGitHub { + owner = "dnordstrom"; + repo = "ayu-theme"; + rev = "cc6f3d3b72897c304e2f00afcaf51df863155e35"; + sha256 = "sha256-1EhTfPhYl+4IootTCCE04y6V7nW1/eWdHarfF7/j1U0="; + }; + + postPatch = '' + ln -sn 3.20 common/gtk-3.0/3.24 + ln -sn 3.18 common/gnome-shell/3.24 + ''; + + nativeBuildInputs = [ + autoreconfHook + gtk3 + inkscape + optipng + pkg-config + sassc + ]; + + propagatedUserEnvPkgs = [ + gnome.gnome-themes-extra + gtk-engine-murrine + ]; + + enableParallelBuilding = true; + + preBuild = '' + # Shut up inkscape's warnings about creating profile directory + export HOME="$NIX_BUILD_ROOT" + ''; + + configureFlags = [ + "--with-gnome-shell=${gnome.gnome-shell.version}" + "--disable-unity" + ]; + + postInstall = '' + install -Dm644 -t $out/share/doc/${pname} AUTHORS *.md + ''; + + meta = with lib; { + description = "Ayu colored GTK and Kvantum themes based on Arc"; + homepage = "https://github.com/dnordstrom/ayu-theme/"; + license = licenses.gpl3; + platforms = platforms.linux; + maintainers = with maintainers; [ lovesegfault ]; + }; +} + diff --git a/pkgs/data/themes/flat-remix-gnome/default.nix b/pkgs/data/themes/flat-remix-gnome/default.nix index bef378d66c3e..4c43a48c1d9f 100644 --- a/pkgs/data/themes/flat-remix-gnome/default.nix +++ b/pkgs/data/themes/flat-remix-gnome/default.nix @@ -2,24 +2,30 @@ , fetchFromGitHub , glib , lib +, writeScriptBin }: - +let + # make install will use dconf to find desktop background file uri. + # consider adding an args to allow specify pictures manually. + # https://github.com/daniruiz/flat-remix-gnome/blob/20211113/Makefile#L38 + fake-dconf = writeScriptBin "dconf" "echo -n"; +in stdenv.mkDerivation rec { pname = "flat-remix-gnome"; - version = "20211028"; + version = "20211113"; src = fetchFromGitHub { owner = "daniruiz"; repo = pname; rev = version; - hash = "sha256-sHJj81MmU9s5sUq5gaIT3leezuG0aVvgTD70Kho9Z0c="; + hash = "sha256-A9aiaS4CXRpr4+Y8+tyvWYRbR9STFS9TuplGksPfqtU="; }; - nativeBuildInputs = [ glib ]; + nativeBuildInputs = [ glib fake-dconf ]; makeFlags = [ "PREFIX=$(out)" ]; preInstall = '' # make install will back up this file, it will fail if the file doesn't exist. - # https://github.com/daniruiz/flat-remix-gnome/blob/20211028/Makefile#L54 + # https://github.com/daniruiz/flat-remix-gnome/blob/20211113/Makefile#L56 mkdir -p $out/share/gnome-shell/ touch $out/share/gnome-shell/gnome-shell-theme.gresource ''; diff --git a/pkgs/data/themes/marwaita/default.nix b/pkgs/data/themes/marwaita/default.nix index be107047799f..5676d03abeee 100644 --- a/pkgs/data/themes/marwaita/default.nix +++ b/pkgs/data/themes/marwaita/default.nix @@ -9,13 +9,13 @@ stdenv.mkDerivation rec { pname = "marwaita"; - version = "11.2.1"; + version = "11.3"; src = fetchFromGitHub { owner = "darkomarko42"; repo = pname; rev = version; - sha256 = "1bc9pj5k0zwc5fspp7b2i2sfrd6qbbi4kyxggc8kxrgv1sdgw3ff"; + sha256 = "sha256-7l3fvqhMMJyv27yv/jShju0hL5AAvHk8pmISj/oyUP4="; }; buildInputs = [ diff --git a/pkgs/desktops/enlightenment/terminology/default.nix b/pkgs/desktops/enlightenment/terminology/default.nix index e74f91d8d483..10b97436b911 100644 --- a/pkgs/desktops/enlightenment/terminology/default.nix +++ b/pkgs/desktops/enlightenment/terminology/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "terminology"; - version = "1.10.0"; + version = "1.11.0"; src = fetchurl { url = "https://download.enlightenment.org/rel/apps/${pname}/${pname}-${version}.tar.xz"; - sha256 = "0imk7cjkcjss3zf4hjwmy54pbizm6l6pq553jcx7bpsnhs56bbsz"; + sha256 = "0bbav27p1xni7kidgf3vn42bwsfrzds301k3f7c8dg7v5yyq9n2g"; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/gnome/apps/gnome-calendar/default.nix b/pkgs/desktops/gnome/apps/gnome-calendar/default.nix index c8c2853203ce..89b6b1e384c3 100644 --- a/pkgs/desktops/gnome/apps/gnome-calendar/default.nix +++ b/pkgs/desktops/gnome/apps/gnome-calendar/default.nix @@ -24,11 +24,11 @@ stdenv.mkDerivation rec { pname = "gnome-calendar"; - version = "41.0"; + version = "41.1"; src = fetchurl { url = "mirror://gnome/sources/${pname}/${lib.versions.major version}/${pname}-${version}.tar.xz"; - sha256 = "0gqrxcn7fcvlh5c9691lx5zgdgs71ah15h5psrbhkg8qcqy95b3k"; + sha256 = "m1EmsjPhuPic9MIyYIlXHYKakwPsieplz2IWTmp0IuE="; }; patches = [ diff --git a/pkgs/desktops/gnome/apps/gnome-todo/default.nix b/pkgs/desktops/gnome/apps/gnome-todo/default.nix index e486279508c8..f3dde6585aeb 100644 --- a/pkgs/desktops/gnome/apps/gnome-todo/default.nix +++ b/pkgs/desktops/gnome/apps/gnome-todo/default.nix @@ -36,8 +36,10 @@ stdenv.mkDerivation rec { patches = [ # fix build race bug https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=257667 (fetchpatch { - url = "https://cgit.freebsd.org/ports/patch/?id=a4faaf6cf7835014b5f69a337b544ea4ee7f9655"; - sha256 = "sha256-IMBfqtrqBw3DdmJG0qchZFR6Am1PICMnM5P6BcS8oqI="; + url = "https://cgit.freebsd.org/ports/plain/deskutils/gnome-todo/files/patch-src_meson.build?id=a4faaf6cf7835014b5f69a337b544ea4ee7f9655"; + sha256 = "sha256:0ihixyq72yhx6njij7bldsqb80x3y217yh6livknlf5r1wr3hakn"; + extraPrefix = ""; + name = "gnome-todo_meson-build.patch"; }) ]; diff --git a/pkgs/desktops/gnome/core/gnome-desktop/default.nix b/pkgs/desktops/gnome/core/gnome-desktop/default.nix index 6ab45283c852..766ed1b7cfb5 100644 --- a/pkgs/desktops/gnome/core/gnome-desktop/default.nix +++ b/pkgs/desktops/gnome/core/gnome-desktop/default.nix @@ -26,13 +26,13 @@ stdenv.mkDerivation rec { pname = "gnome-desktop"; - version = "41.0"; + version = "41.1"; outputs = [ "out" "dev" "devdoc" ]; src = fetchurl { url = "mirror://gnome/sources/gnome-desktop/${lib.versions.major version}/${pname}-${version}.tar.xz"; - sha256 = "sha256-acsdPZoQcA62Y0jvHA5mqFX8WpeuYpAt+XpJnaEVYtI="; + sha256 = "sha256-voqvpk17ov0xB57tY505/aHqd+9301pnjwGcTZHUc8I="; }; patches = [ diff --git a/pkgs/desktops/gnome/core/gnome-shell/default.nix b/pkgs/desktops/gnome/core/gnome-shell/default.nix index 04a4b0984ecb..d9eeb9a8d8b1 100644 --- a/pkgs/desktops/gnome/core/gnome-shell/default.nix +++ b/pkgs/desktops/gnome/core/gnome-shell/default.nix @@ -66,13 +66,13 @@ let in stdenv.mkDerivation rec { pname = "gnome-shell"; - version = "41.0"; + version = "41.1"; outputs = [ "out" "devdoc" ]; src = fetchurl { url = "mirror://gnome/sources/gnome-shell/${lib.versions.major version}/${pname}-${version}.tar.xz"; - sha256 = "Uvlx6FFA5d50uTae9mVuSc6Vrx8jL8Hg3x8EYSmrT2U="; + sha256 = "X3QkVt/gBgXA8JCjcoymJ5e8SeUK+FK71yhdoaBRf/Y="; }; patches = [ @@ -103,13 +103,6 @@ stdenv.mkDerivation rec { url = "https://src.fedoraproject.org/rpms/gnome-shell/raw/9a647c460b651aaec0b8a21f046cc289c1999416/f/0001-gdm-Work-around-failing-fingerprint-auth.patch"; sha256 = "pFvZli3TilUt6YwdZztpB8Xq7O60XfuWUuPMMVSpqLw="; }) - - # Make color picker in GTK work again - # https://gitlab.gnome.org/GNOME/gnome-shell/-/merge_requests/1990 - (fetchpatch { - url = "https://gitlab.gnome.org/GNOME/gnome-shell/-/commit/a3dcdaae30bdcbadec7ba3fa31c9eb0bb2a4c8c2.patch"; - sha256 = "1UTWGZ5CiVJVCYcepaf+A6/8X/s6jUMsYB4BJ7VTjxk="; - }) ]; nativeBuildInputs = [ diff --git a/pkgs/desktops/gnome/core/mutter/default.nix b/pkgs/desktops/gnome/core/mutter/default.nix index 78b90a379c38..209d9fbdb92a 100644 --- a/pkgs/desktops/gnome/core/mutter/default.nix +++ b/pkgs/desktops/gnome/core/mutter/default.nix @@ -46,13 +46,13 @@ let self = stdenv.mkDerivation rec { pname = "mutter"; - version = "41.0"; + version = "41.1"; outputs = [ "out" "dev" "man" ]; src = fetchurl { url = "mirror://gnome/sources/mutter/${lib.versions.major version}/${pname}-${version}.tar.xz"; - sha256 = "sha256-+oChp0QETYjr/Wd/8DID1ncF7SzWJOoGy7i1iUjN+J4="; + sha256 = "WOY/0LxD81E08hMTr/Suv5LIKdbfTcmaBEoeN2aR4/M="; }; patches = [ diff --git a/pkgs/desktops/gnome/core/simple-scan/default.nix b/pkgs/desktops/gnome/core/simple-scan/default.nix index 9514caa1e9b1..f5a28ead33c1 100644 --- a/pkgs/desktops/gnome/core/simple-scan/default.nix +++ b/pkgs/desktops/gnome/core/simple-scan/default.nix @@ -25,11 +25,11 @@ stdenv.mkDerivation rec { pname = "simple-scan"; - version = "40.5"; + version = "40.6"; src = fetchurl { url = "mirror://gnome/sources/${pname}/${lib.versions.major version}/${pname}-${version}.tar.xz"; - sha256 = "sha256-61N55MtspgUJLJQiEMGEJdA2dz2nZUHkO4nYIj+CuaQ="; + sha256 = "sha256-8v8wWZjMRGNsH93iDNirHUQdSGOgWeLXpg+Od6/o8XE="; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/lxqt/libfm-qt/default.nix b/pkgs/desktops/lxqt/libfm-qt/default.nix index c28d069d5f11..fd7c7758f2bc 100644 --- a/pkgs/desktops/lxqt/libfm-qt/default.nix +++ b/pkgs/desktops/lxqt/libfm-qt/default.nix @@ -16,13 +16,13 @@ mkDerivation rec { pname = "libfm-qt"; - version = "0.17.1"; + version = "1.0.0"; src = fetchFromGitHub { owner = "lxqt"; repo = "libfm-qt"; rev = version; - sha256 = "0jdsqvwp81y4ylabrqdc673x80fp41rpp5w7c1v9zmk9k8z4s5ll"; + sha256 = "1kk2cv9cp2gdj2pzdgm72c009iyl3mhrvsiz05kdxd4v1kn38ci1"; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/lxqt/liblxqt/default.nix b/pkgs/desktops/lxqt/liblxqt/default.nix index b7aa5d95eaf1..8e17437b4721 100644 --- a/pkgs/desktops/lxqt/liblxqt/default.nix +++ b/pkgs/desktops/lxqt/liblxqt/default.nix @@ -15,13 +15,13 @@ mkDerivation rec { pname = "liblxqt"; - version = "0.17.0"; + version = "1.0.0"; src = fetchFromGitHub { owner = "lxqt"; repo = pname; rev = version; - sha256 = "0n0pjz5wihchfcji8qal0lw8kzvv3im50v1lbwww4ymrgacz9h4l"; + sha256 = "08cqvq99pvz8lz13273hlpv8160r6zyz4f7h4kl1g8xdga7m45gr"; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/lxqt/libqtxdg/default.nix b/pkgs/desktops/lxqt/libqtxdg/default.nix index 7abaed7c09ab..b6294e20dcef 100644 --- a/pkgs/desktops/lxqt/libqtxdg/default.nix +++ b/pkgs/desktops/lxqt/libqtxdg/default.nix @@ -10,13 +10,13 @@ mkDerivation rec { pname = "libqtxdg"; - version = "3.7.1"; + version = "3.8.0"; src = fetchFromGitHub { owner = "lxqt"; repo = pname; rev = version; - sha256 = "1x806hdics3d49ys0a2vkln9znidj82qscjnpcqxclxn26xqzd91"; + sha256 = "14jrzwdmhgn6bcggmhxx5rdapjzm93cfkjjls3nii1glnkwzncxz"; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/lxqt/libsysstat/default.nix b/pkgs/desktops/lxqt/libsysstat/default.nix index 8da7675d485c..bd5b6679259d 100644 --- a/pkgs/desktops/lxqt/libsysstat/default.nix +++ b/pkgs/desktops/lxqt/libsysstat/default.nix @@ -9,13 +9,13 @@ mkDerivation rec { pname = "libsysstat"; - version = "0.4.5"; + version = "0.4.6"; src = fetchFromGitHub { owner = "lxqt"; repo = pname; rev = version; - sha256 = "14q55iayygmjh63zgsb9qa4af766gj9b0jsrmfn85fdiqb8p8yfz"; + sha256 = "0z2r8041vqssm59lkb3ka7qis9br4wvavxzd45m3pnqlp7wwhkbn"; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/lxqt/lximage-qt/default.nix b/pkgs/desktops/lxqt/lximage-qt/default.nix index 10e40f4ed9dc..510339b46f56 100644 --- a/pkgs/desktops/lxqt/lximage-qt/default.nix +++ b/pkgs/desktops/lxqt/lximage-qt/default.nix @@ -16,13 +16,13 @@ mkDerivation rec { pname = "lximage-qt"; - version = "0.17.0"; + version = "1.0.0"; src = fetchFromGitHub { owner = "lxqt"; repo = pname; rev = version; - sha256 = "1xajsblk2954crvligvrgwp7q1pj7124xdfnlq9k9q0ya2xc36lx"; + sha256 = "1bf0smkawyibrabw7zcynwr2afpsv7pnnyxn4nqgh6mxnp7al157"; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/lxqt/lxqt-about/default.nix b/pkgs/desktops/lxqt/lxqt-about/default.nix index 08e21736125a..abab373430bf 100644 --- a/pkgs/desktops/lxqt/lxqt-about/default.nix +++ b/pkgs/desktops/lxqt/lxqt-about/default.nix @@ -14,13 +14,13 @@ mkDerivation rec { pname = "lxqt-about"; - version = "0.17.0"; + version = "1.0.0"; src = fetchFromGitHub { owner = "lxqt"; repo = pname; rev = version; - sha256 = "011jcab47iif741azfgvf52my118nwkny5m0pa7nsqyv8ad1fsiw"; + sha256 = "1fr2mx19ks4crh7cjc080vkrzldzgmghxvrzjqq7lspkzd5a0pjb"; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/lxqt/lxqt-admin/default.nix b/pkgs/desktops/lxqt/lxqt-admin/default.nix index a3fd034e3365..120014b25f62 100644 --- a/pkgs/desktops/lxqt/lxqt-admin/default.nix +++ b/pkgs/desktops/lxqt/lxqt-admin/default.nix @@ -15,13 +15,13 @@ mkDerivation rec { pname = "lxqt-admin"; - version = "0.17.0"; + version = "1.0.0"; src = fetchFromGitHub { owner = "lxqt"; repo = pname; rev = version; - sha256 = "1xi169gz1sarv7584kg33ymckqlx9ddci7r9m0dlm4a7mw7fm0lf"; + sha256 = "06l7vs8aqx37bhrxf9xa16g7rdmia8j73q78qfj6syw57f3ssjr9"; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/lxqt/lxqt-archiver/default.nix b/pkgs/desktops/lxqt/lxqt-archiver/default.nix index 348ee3423de7..a6560198f6b5 100644 --- a/pkgs/desktops/lxqt/lxqt-archiver/default.nix +++ b/pkgs/desktops/lxqt/lxqt-archiver/default.nix @@ -14,13 +14,13 @@ mkDerivation rec { pname = "lxqt-archiver"; - version = "0.4.0"; + version = "0.5.0"; src = fetchFromGitHub { owner = "lxqt"; repo = "lxqt-archiver"; rev = version; - sha256 = "0wpayzcyqcnvzk95bqql7p07l8p7mwdgdj7zlbcsdn0wis4yhjm6"; + sha256 = "033lq7n34a5qk2zv8kr1633p5x2cjimv4w4n86w33xmcwya4yiji"; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/lxqt/lxqt-build-tools/default.nix b/pkgs/desktops/lxqt/lxqt-build-tools/default.nix index fb2ed9e37d7b..15bc1941af3f 100644 --- a/pkgs/desktops/lxqt/lxqt-build-tools/default.nix +++ b/pkgs/desktops/lxqt/lxqt-build-tools/default.nix @@ -13,13 +13,13 @@ mkDerivation rec { pname = "lxqt-build-tools"; - version = "0.9.0"; + version = "0.10.0"; src = fetchFromGitHub { owner = "lxqt"; repo = pname; rev = version; - sha256 = "0zhcv6cbdn9fr5lpglz26gzssbxkpi824sgc0g7w3hh1z6nqqf8l"; + sha256 = "1hb04zgpalxv6da3myf1dxsbjix15dczzfq8a24g5dg2zfhwpx21"; }; # Nix clang on darwin identifies as 'Clang', not 'AppleClang' diff --git a/pkgs/desktops/lxqt/lxqt-config/default.nix b/pkgs/desktops/lxqt/lxqt-config/default.nix index 745c4e71b5ea..d46e8e05e09b 100644 --- a/pkgs/desktops/lxqt/lxqt-config/default.nix +++ b/pkgs/desktops/lxqt/lxqt-config/default.nix @@ -19,13 +19,13 @@ mkDerivation rec { pname = "lxqt-config"; - version = "0.17.1"; + version = "1.0.0"; src = fetchFromGitHub { owner = "lxqt"; repo = pname; rev = version; - sha256 = "0b9jihmsqgdfdsisz15j3p53fgf1w30s8irj9zjh52fsj58p924p"; + sha256 = "0yllqjmj4xbqi5681ffjxmlwlf9k9bpy3hgs7li6lnn90yy46qmr"; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/lxqt/lxqt-globalkeys/default.nix b/pkgs/desktops/lxqt/lxqt-globalkeys/default.nix index 6dab1cbf736f..13983bb0881d 100644 --- a/pkgs/desktops/lxqt/lxqt-globalkeys/default.nix +++ b/pkgs/desktops/lxqt/lxqt-globalkeys/default.nix @@ -15,13 +15,13 @@ mkDerivation rec { pname = "lxqt-globalkeys"; - version = "0.17.0"; + version = "1.0.0"; src = fetchFromGitHub { owner = "lxqt"; repo = pname; rev = version; - sha256 = "135292l8w9sngg437n1zigkap15apifyqd9847ln84bxsmcj8lay"; + sha256 = "015nrlzlcams4k8svrq7692xbjlai1dmwvjdldncsbrgrmfa702m"; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/lxqt/lxqt-notificationd/default.nix b/pkgs/desktops/lxqt/lxqt-notificationd/default.nix index 093706fd6eee..baa9784e4ef6 100644 --- a/pkgs/desktops/lxqt/lxqt-notificationd/default.nix +++ b/pkgs/desktops/lxqt/lxqt-notificationd/default.nix @@ -15,13 +15,13 @@ mkDerivation rec { pname = "lxqt-notificationd"; - version = "0.17.0"; + version = "1.0.0"; src = fetchFromGitHub { owner = "lxqt"; repo = pname; rev = version; - sha256 = "1r2cmxcjkm9lvb2ilq2winyqndnamsd9x2ynmfiqidby2pcr9i3a"; + sha256 = "06gb8k1p24gm5axy42npq7n4lmsxb03a9kvzqby44qmgwh8pn069"; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/lxqt/lxqt-openssh-askpass/default.nix b/pkgs/desktops/lxqt/lxqt-openssh-askpass/default.nix index a6fbfc2f5620..7f5f1e74f359 100644 --- a/pkgs/desktops/lxqt/lxqt-openssh-askpass/default.nix +++ b/pkgs/desktops/lxqt/lxqt-openssh-askpass/default.nix @@ -15,13 +15,13 @@ mkDerivation rec { pname = "lxqt-openssh-askpass"; - version = "0.17.0"; + version = "1.0.0"; src = fetchFromGitHub { owner = "lxqt"; repo = pname; rev = version; - sha256 = "18pn7kw9aw7859jnwvjnjcvr50pqsi8gqcxsbx9rvsjrybw2qcgc"; + sha256 = "0fp5jq3j34p81y200jbyp7wcz04r7jk07bfwrigjwcyj2xknkrgw"; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/lxqt/lxqt-panel/default.nix b/pkgs/desktops/lxqt/lxqt-panel/default.nix index 34578e6bc5fe..b9b9936893fb 100644 --- a/pkgs/desktops/lxqt/lxqt-panel/default.nix +++ b/pkgs/desktops/lxqt/lxqt-panel/default.nix @@ -30,13 +30,13 @@ mkDerivation rec { pname = "lxqt-panel"; - version = "0.17.1"; + version = "1.0.0"; src = fetchFromGitHub { owner = "lxqt"; repo = pname; rev = version; - sha256 = "1wmm4sml7par5z9xcs5qx2y2pdbnnh66zs37jhx9f9ihcmh1sqlw"; + sha256 = "0i63jyjg31336davjdak7z3as34gazx1lri65fk2f07kka9dx1jl"; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/lxqt/lxqt-policykit/default.nix b/pkgs/desktops/lxqt/lxqt-policykit/default.nix index 0a84799d3728..51e46b00ce82 100644 --- a/pkgs/desktops/lxqt/lxqt-policykit/default.nix +++ b/pkgs/desktops/lxqt/lxqt-policykit/default.nix @@ -19,13 +19,13 @@ mkDerivation rec { pname = "lxqt-policykit"; - version = "0.17.0"; + version = "1.0.0"; src = fetchFromGitHub { owner = "lxqt"; repo = pname; rev = version; - sha256 = "15f0hnif8zs38qgckif63dds9zgpp3dmg9pg3ppgh664lkbxx7n7"; + sha256 = "0hmxzkkggnpci305xax9663cbjqdh6n0j0dawwcpwj4ks8mp7xh7"; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/lxqt/lxqt-powermanagement/default.nix b/pkgs/desktops/lxqt/lxqt-powermanagement/default.nix index 3713bcf0bb50..90f03f6b3a1e 100644 --- a/pkgs/desktops/lxqt/lxqt-powermanagement/default.nix +++ b/pkgs/desktops/lxqt/lxqt-powermanagement/default.nix @@ -18,13 +18,13 @@ mkDerivation rec { pname = "lxqt-powermanagement"; - version = "0.17.1"; + version = "1.0.0"; src = fetchFromGitHub { owner = "lxqt"; repo = pname; rev = version; - sha256 = "04prx15l05kw97mwajc8yi2s7p3n6amzs5jnnmh9payxzp6glzmk"; + sha256 = "0dwz8z3463dz49d5k5bh7splb1zdi617xc4xzlqxxrxbf3n8x4ix"; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/lxqt/lxqt-qtplugin/default.nix b/pkgs/desktops/lxqt/lxqt-qtplugin/default.nix index 3095b2399261..05119e9da400 100644 --- a/pkgs/desktops/lxqt/lxqt-qtplugin/default.nix +++ b/pkgs/desktops/lxqt/lxqt-qtplugin/default.nix @@ -15,13 +15,13 @@ mkDerivation rec { pname = "lxqt-qtplugin"; - version = "0.17.0"; + version = "1.0.0"; src = fetchFromGitHub { owner = "lxqt"; repo = pname; rev = version; - sha256 = "168ii015j57hkccdh27h2fdh8yzs8nzy8nw20wnx6fbcg5401666"; + sha256 = "1vr2hlv1q9xwkh9bapy29g9fi90d33xw7pr9zc1bfma6j152qs36"; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/lxqt/lxqt-runner/default.nix b/pkgs/desktops/lxqt/lxqt-runner/default.nix index 32d9194be670..b1d8ad352720 100644 --- a/pkgs/desktops/lxqt/lxqt-runner/default.nix +++ b/pkgs/desktops/lxqt/lxqt-runner/default.nix @@ -20,13 +20,13 @@ mkDerivation rec { pname = "lxqt-runner"; - version = "0.17.0"; + version = "1.0.0"; src = fetchFromGitHub { owner = "lxqt"; repo = pname; rev = version; - sha256 = "167gzn6aqk7akzbmrnm7nmcpkl0nphr8axbfgwnw552dnk6v8gn0"; + sha256 = "06b7l2jkh0h4ikddh82nxkz7qhg5ap7l016klg3jl2x659z59hpj"; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/lxqt/lxqt-session/default.nix b/pkgs/desktops/lxqt/lxqt-session/default.nix index b62ca157eeb4..cbda2a7185af 100644 --- a/pkgs/desktops/lxqt/lxqt-session/default.nix +++ b/pkgs/desktops/lxqt/lxqt-session/default.nix @@ -19,13 +19,13 @@ mkDerivation rec { pname = "lxqt-session"; - version = "0.17.1"; + version = "1.0.0"; src = fetchFromGitHub { owner = "lxqt"; repo = pname; rev = version; - sha256 = "1nhw3y3dm4crawc1905l6drn0i79fs1dzs8iak0vmmplbiv3fvgg"; + sha256 = "0g355dmlyz8iljw953gp5jqlz02abd1ksssah826hxcy4j89mk7s"; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/lxqt/lxqt-sudo/default.nix b/pkgs/desktops/lxqt/lxqt-sudo/default.nix index 4daf40197e87..bef00af4febc 100644 --- a/pkgs/desktops/lxqt/lxqt-sudo/default.nix +++ b/pkgs/desktops/lxqt/lxqt-sudo/default.nix @@ -16,13 +16,13 @@ mkDerivation rec { pname = "lxqt-sudo"; - version = "0.17.0"; + version = "1.0.0"; src = fetchFromGitHub { owner = "lxqt"; repo = pname; rev = version; - sha256 = "10s8k83mkqiakh18mh1l7idjp95cy49rg8dh14cy159dk8mchcd0"; + sha256 = "1y2vq3n5sv6cxqpnz79kl3dybfbw65z93cahdz8m6gplzpp24gn4"; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/lxqt/lxqt-themes/default.nix b/pkgs/desktops/lxqt/lxqt-themes/default.nix index 985e84d03c25..7f7278528c44 100644 --- a/pkgs/desktops/lxqt/lxqt-themes/default.nix +++ b/pkgs/desktops/lxqt/lxqt-themes/default.nix @@ -8,13 +8,13 @@ mkDerivation rec { pname = "lxqt-themes"; - version = "0.17.0"; + version = "1.0.0"; src = fetchFromGitHub { owner = "lxqt"; repo = pname; rev = version; - sha256 = "13zh5yrq0f96cn5m6i7zdvgb9iw656fad5ps0s2zx6x8mj2mv64f"; + sha256 = "1viaqmcq4axwsq5vrr08j95swapbqnwmv064kaijm1jj9csadsvv"; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/lxqt/pavucontrol-qt/default.nix b/pkgs/desktops/lxqt/pavucontrol-qt/default.nix index 662930e4e37e..314a7554319d 100644 --- a/pkgs/desktops/lxqt/pavucontrol-qt/default.nix +++ b/pkgs/desktops/lxqt/pavucontrol-qt/default.nix @@ -13,13 +13,13 @@ mkDerivation rec { pname = "pavucontrol-qt"; - version = "0.17.0"; + version = "1.0.0"; src = fetchFromGitHub { owner = "lxqt"; repo = pname; rev = version; - sha256 = "0syc4bc2k7961la2c77787akhcljspq3s2nyqvb7mq7ddq1xn0wx"; + sha256 = "1n8h8flcm0na7n295lkjv49brj6razwml21wwrinwllw7s948qp0"; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/lxqt/pcmanfm-qt/default.nix b/pkgs/desktops/lxqt/pcmanfm-qt/default.nix index ba913cd147f6..9f06d9f76d3b 100644 --- a/pkgs/desktops/lxqt/pcmanfm-qt/default.nix +++ b/pkgs/desktops/lxqt/pcmanfm-qt/default.nix @@ -15,13 +15,13 @@ mkDerivation rec { pname = "pcmanfm-qt"; - version = "0.17.0"; + version = "1.0.0"; src = fetchFromGitHub { owner = "lxqt"; repo = pname; rev = version; - sha256 = "1awyncpypygsrg7d2nc6xh1l4xaln3ypdliy4xmq8bf94sh9rf0y"; + sha256 = "1g7pl9ygk4k72rsrcsfjnr7h2yzp3pfmlc5wq6bhyq9rqpr5yv7l"; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/lxqt/qps/default.nix b/pkgs/desktops/lxqt/qps/default.nix index 0a4918190b06..f8f134037755 100644 --- a/pkgs/desktops/lxqt/qps/default.nix +++ b/pkgs/desktops/lxqt/qps/default.nix @@ -14,13 +14,13 @@ mkDerivation rec { pname = "qps"; - version = "2.3.0"; + version = "2.4.0"; src = fetchFromGitHub { owner = "lxqt"; repo = pname; rev = version; - sha256 = "0fihhnb7vp6x072spg1fnxaip4sq9mbvhrfqdwnzph5dlyvs54nj"; + sha256 = "11mbzn4syfghb3zvdrw2011njagcw206ng6c8l9z9h3zlhmhcd57"; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/lxqt/qterminal/default.nix b/pkgs/desktops/lxqt/qterminal/default.nix index d383703199a8..e93e404762a2 100644 --- a/pkgs/desktops/lxqt/qterminal/default.nix +++ b/pkgs/desktops/lxqt/qterminal/default.nix @@ -12,13 +12,13 @@ mkDerivation rec { pname = "qterminal"; - version = "0.17.0"; + version = "1.0.0"; src = fetchFromGitHub { owner = "lxqt"; repo = pname; rev = version; - sha256 = "0mdcz45faj9ysw725qzg572968kf5sh6zfw7iiksi26s8kiyhbbp"; + sha256 = "12p3fnbkpj6z0iplg75304l8kvnn145iq6bpw30n9bwflxrd6yhd"; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/lxqt/qtermwidget/default.nix b/pkgs/desktops/lxqt/qtermwidget/default.nix index 94a9c651cc8c..20602573d282 100644 --- a/pkgs/desktops/lxqt/qtermwidget/default.nix +++ b/pkgs/desktops/lxqt/qtermwidget/default.nix @@ -10,13 +10,13 @@ mkDerivation rec { pname = "qtermwidget"; - version = "0.17.0"; + version = "1.0.0"; src = fetchFromGitHub { owner = "lxqt"; repo = pname; rev = version; - sha256 = "0pmkk2mba8z6cgfsd8sy4vhf5d9fn9hvxszzyycyy1ndygjrc1v8"; + sha256 = "0i1w5wgac7r4p0jjrrswlvvwivkwrp1b88xh5ijjw6k9irjc7zf6"; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/lxqt/screengrab/default.nix b/pkgs/desktops/lxqt/screengrab/default.nix index 0ed305403b19..2e1c568a4890 100644 --- a/pkgs/desktops/lxqt/screengrab/default.nix +++ b/pkgs/desktops/lxqt/screengrab/default.nix @@ -17,13 +17,13 @@ mkDerivation rec { pname = "screengrab"; - version = "2.2.0"; + version = "2.3.0"; src = fetchFromGitHub { owner = "lxqt"; repo = pname; rev = version; - sha256 = "16dycq40lbvk6jvpj7zp85m23cgvh8nj38fz99gxjfzn2nz1gy4a"; + sha256 = "1ca5yyvcahabyrdjcsznz9j66yrdlvnfa3650iwlz6922c3dkn2k"; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/mate/mate-themes/default.nix b/pkgs/desktops/mate/mate-themes/default.nix index 21c7b23537ec..274501976235 100644 --- a/pkgs/desktops/mate/mate-themes/default.nix +++ b/pkgs/desktops/mate/mate-themes/default.nix @@ -3,11 +3,11 @@ stdenv.mkDerivation rec { pname = "mate-themes"; - version = "3.22.22"; + version = "3.22.23"; src = fetchurl { url = "https://pub.mate-desktop.org/releases/themes/${lib.versions.majorMinor version}/${pname}-${version}.tar.xz"; - sha256 = "18crdwfpfm3br4pv94wy7rpmzzb69im4j8dgq1b7c8gcbbzay05x"; + sha256 = "1avgzccdmr7y18rnp3xrhwk82alv2dlig3wh7ivgahcqdiiavrb1"; }; nativeBuildInputs = [ pkg-config gettext gtk3 ]; diff --git a/pkgs/desktops/mate/mate-tweak/default.nix b/pkgs/desktops/mate/mate-tweak/default.nix index 5aebd6aef43a..e379f5369f5b 100644 --- a/pkgs/desktops/mate/mate-tweak/default.nix +++ b/pkgs/desktops/mate/mate-tweak/default.nix @@ -15,13 +15,13 @@ python3Packages.buildPythonApplication rec { pname = "mate-tweak"; - version = "21.04.3"; + version = "21.10.0"; src = fetchFromGitHub { owner = "ubuntu-mate"; repo = pname; rev = version; - sha256 = "0vpzy7awhb1xfsdjsrchy5b9dygj4ixdcvgx5v5w8hllmi4yxpc1"; + sha256 = "0m61p6idajsrrbjps7s1pnl6nfzwpy7j6l9bdhqi9gaaij687shn"; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/pantheon/desktop/elementary-default-settings/default.nix b/pkgs/desktops/pantheon/desktop/elementary-default-settings/default.nix index c5ccba962e44..7b0ea248ed61 100644 --- a/pkgs/desktops/pantheon/desktop/elementary-default-settings/default.nix +++ b/pkgs/desktops/pantheon/desktop/elementary-default-settings/default.nix @@ -58,20 +58,12 @@ stdenv.mkDerivation rec { # Our launchers that use paths at /run/current-system/sw/bin mkdir -p $out/etc/skel/.config/plank/dock1 cp -avr ${./launchers} $out/etc/skel/.config/plank/dock1/launchers - - # Whitelist wingpanel indicators to be used in the greeter - # https://github.com/elementary/greeter/blob/fc19752f147c62767cd2097c0c0c0fcce41e5873/debian/io.elementary.greeter.whitelist - # wingpanel 2.3.2 renamed this to .allowed to .forbidden - # https://github.com/elementary/wingpanel/pull/326 - install -D ${./io.elementary.greeter.allowed} $out/etc/wingpanel.d/io.elementary.greeter.allowed ''; postFixup = '' # https://github.com/elementary/default-settings/issues/55 - rm -rf $out/share/plymouth - rm -rf $out/share/cups - - rm -rf $out/share/applications + rm -r $out/share/cups + rm -r $out/share/applications ''; passthru = { diff --git a/pkgs/desktops/pantheon/desktop/elementary-default-settings/io.elementary.greeter.allowed b/pkgs/desktops/pantheon/desktop/elementary-default-settings/io.elementary.greeter.allowed deleted file mode 100644 index 0cff31f4f777..000000000000 --- a/pkgs/desktops/pantheon/desktop/elementary-default-settings/io.elementary.greeter.allowed +++ /dev/null @@ -1,6 +0,0 @@ -liba11y.so -libbluetooth.so -libkeyboard.so -libnetwork.so -libpower.so -libsession.so diff --git a/pkgs/desktops/plasma-5/3rdparty/addons/bismuth/0001-Avoid-usage-of-npx.patch b/pkgs/desktops/plasma-5/3rdparty/addons/bismuth/0001-Avoid-usage-of-npx.patch new file mode 100644 index 000000000000..34e06d77bd29 --- /dev/null +++ b/pkgs/desktops/plasma-5/3rdparty/addons/bismuth/0001-Avoid-usage-of-npx.patch @@ -0,0 +1,37 @@ +From c9aaff2461daba31a25ed20c0789ffd7c3561887 Mon Sep 17 00:00:00 2001 +From: Pasquale <p3dimaria@hotmail.it> +Date: Tue, 9 Nov 2021 23:12:50 +0100 +Subject: [PATCH] Avoid usage of npx + +tsc is only used for checking type annotation +that are stripped by esbuild + +--- + src/kwinscript/CMakeLists.txt | 4 ++-- + 1 file changed, 2 insertions(+), 2 deletions(-) + +diff --git a/src/kwinscript/CMakeLists.txt b/src/kwinscript/CMakeLists.txt +index 6d85d5d..6f966a4 100644 +--- a/src/kwinscript/CMakeLists.txt ++++ b/src/kwinscript/CMakeLists.txt +@@ -29,7 +29,7 @@ add_custom_target( + + add_custom_command( + OUTPUT "bismuth/contents/code/index.mjs" +- COMMAND "npx" "esbuild" ++ COMMAND "esbuild" + "--bundle" "${CMAKE_CURRENT_SOURCE_DIR}/index.ts" + "--outfile=${CMAKE_CURRENT_BINARY_DIR}/bismuth/contents/code/index.mjs" + "--format=esm" +@@ -40,7 +40,7 @@ add_custom_command( + + add_custom_target( + LintViaTSC +- COMMAND "npx" "tsc" "--noEmit" "--incremental" ++ COMMAND "true" + COMMENT "👮 Checking sources using TS Compiler..." + ) + +-- +2.33.1 + diff --git a/pkgs/desktops/plasma-5/3rdparty/addons/bismuth/default.nix b/pkgs/desktops/plasma-5/3rdparty/addons/bismuth/default.nix new file mode 100644 index 000000000000..114eb31e69ce --- /dev/null +++ b/pkgs/desktops/plasma-5/3rdparty/addons/bismuth/default.nix @@ -0,0 +1,48 @@ +{ lib +, mkDerivation +, fetchFromGitHub +, kcoreaddons +, kwindowsystem +, plasma-framework +, systemsettings +, cmake +, extra-cmake-modules +, esbuild +}: + +mkDerivation rec { + pname = "bismuth"; + version = "2.1.0"; + + src = fetchFromGitHub { + owner = "Bismuth-Forge"; + repo = pname; + rev = "v${version}"; + sha256 = "sha256-ICpGgFvVi7tiYbMCo3JWQmbA36rdWF4NFYTWIejhxr4="; + }; + + patches = [ + ./0001-Avoid-usage-of-npx.patch + ]; + + nativeBuildInputs = [ + cmake + extra-cmake-modules + esbuild + ]; + + buildInputs = [ + kcoreaddons + kwindowsystem + plasma-framework + systemsettings + ]; + + meta = with lib; { + description = "A dynamic tiling extension for KWin"; + license = licenses.mit; + maintainers = with maintainers; [ pasqui23 ]; + homepage = "https://bismuth-forge.github.io/bismuth/"; + inherit (kwindowsystem.meta) platforms; + }; +} diff --git a/pkgs/desktops/plasma-5/default.nix b/pkgs/desktops/plasma-5/default.nix index e5a239308886..8abf2b37dbec 100644 --- a/pkgs/desktops/plasma-5/default.nix +++ b/pkgs/desktops/plasma-5/default.nix @@ -155,6 +155,7 @@ let thirdParty = let inherit (libsForQt5) callPackage; in { plasma-applet-caffeine-plus = callPackage ./3rdparty/addons/caffeine-plus.nix { }; plasma-applet-virtual-desktop-bar = callPackage ./3rdparty/addons/virtual-desktop-bar.nix { }; + bismuth = callPackage ./3rdparty/addons/bismuth { }; kwin-dynamic-workspaces = callPackage ./3rdparty/kwin/scripts/dynamic-workspaces.nix { }; kwin-tiling = callPackage ./3rdparty/kwin/scripts/tiling.nix { }; krohnkite = callPackage ./3rdparty/kwin/scripts/krohnkite.nix { }; diff --git a/pkgs/desktops/plasma-5/fetch.sh b/pkgs/desktops/plasma-5/fetch.sh index b69eba34b154..91031ac618fb 100644 --- a/pkgs/desktops/plasma-5/fetch.sh +++ b/pkgs/desktops/plasma-5/fetch.sh @@ -1 +1 @@ -WGET_ARGS=( https://download.kde.org/stable/plasma/5.23.1/ -A '*.tar.xz' ) +WGET_ARGS=( https://download.kde.org/stable/plasma/5.23.3/ -A '*.tar.xz' ) diff --git a/pkgs/desktops/plasma-5/kwin/default.nix b/pkgs/desktops/plasma-5/kwin/default.nix index 87b435c2f37f..4e5ba348cd86 100644 --- a/pkgs/desktops/plasma-5/kwin/default.nix +++ b/pkgs/desktops/plasma-5/kwin/default.nix @@ -1,6 +1,6 @@ { mkDerivation, lib, - extra-cmake-modules, kdoctools, + extra-cmake-modules, kdoctools, fetchpatch, epoxy, lcms2, libICE, libSM, libcap, libdrm, libinput, libxkbcommon, mesa, pipewire, udev, wayland, xcb-util-cursor, xwayland, @@ -12,7 +12,7 @@ kcoreaddons, kcrash, kdeclarative, kdecoration, kglobalaccel, ki18n, kiconthemes, kidletime, kinit, kio, knewstuff, knotifications, kpackage, krunner, kscreenlocker, kservice, kwayland, kwayland-server, kwidgetsaddons, - kwindowsystem, kxmlgui, plasma-framework, + kwindowsystem, kxmlgui, plasma-framework, libqaccessibilityclient, }: # TODO (ttuegel): investigate qmlplugindump failure @@ -31,15 +31,24 @@ mkDerivation { kcoreaddons kcrash kdeclarative kdecoration kglobalaccel ki18n kiconthemes kidletime kinit kio knewstuff knotifications kpackage krunner kscreenlocker kservice kwayland kwayland-server kwidgetsaddons kwindowsystem kxmlgui - plasma-framework + plasma-framework libqaccessibilityclient ]; - outputs = [ "dev" "out" ]; + outputs = [ "out" "dev" ]; patches = [ ./0001-follow-symlinks.patch ./0002-xwayland.patch ./0003-plugins-qpa-allow-using-nixos-wrapper.patch ./0001-NixOS-Unwrap-executable-name-for-.desktop-search.patch + # Pass special environments through arguemnts to `kwin_wayland`, bypassing + # ld.so(8) environment stripping due to `kwin_wayland`'s capabilities. + # We need this to have `TZDIR` correctly set for `plasmashell`, or + # everything related to timezone, like clock widgets, will be broken. + # https://invent.kde.org/plasma/kwin/-/merge_requests/1590 + (fetchpatch { + url = "https://invent.kde.org/plasma/kwin/-/commit/9a008b223ad696db3bf5692750f2b74e578e08b8.diff"; + sha256 = "sha256-f35G+g2MVABLDbAkCed3ZmtDWrzYn1rdD08mEx35j4k="; + }) ]; CXXFLAGS = [ ''-DNIXPKGS_XWAYLAND=\"${lib.getBin xwayland}/bin/Xwayland\"'' diff --git a/pkgs/desktops/plasma-5/plasma-vault/encfs-path.patch b/pkgs/desktops/plasma-5/plasma-vault/0001-encfs-path.patch similarity index 66% rename from pkgs/desktops/plasma-5/plasma-vault/encfs-path.patch rename to pkgs/desktops/plasma-5/plasma-vault/0001-encfs-path.patch index 14f593ea60a8..a5e9d8c531e1 100644 --- a/pkgs/desktops/plasma-5/plasma-vault/encfs-path.patch +++ b/pkgs/desktops/plasma-5/plasma-vault/0001-encfs-path.patch @@ -1,19 +1,31 @@ +From fef6bfe87db4411e3dda2f96741cd8204fe41d85 Mon Sep 17 00:00:00 2001 +From: Thomas Tuegel <ttuegel@mailbox.org> +Date: Tue, 2 Nov 2021 05:57:50 -0500 +Subject: [PATCH 1/3] encfs path + +--- + kded/engine/backends/encfs/encfsbackend.cpp | 4 ++-- + 1 file changed, 2 insertions(+), 2 deletions(-) + diff --git a/kded/engine/backends/encfs/encfsbackend.cpp b/kded/engine/backends/encfs/encfsbackend.cpp -index 628af7b..6edd38e 100644 +index 2d15fa2..3f49867 100644 --- a/kded/engine/backends/encfs/encfsbackend.cpp +++ b/kded/engine/backends/encfs/encfsbackend.cpp -@@ -100,12 +100,12 @@ QProcess *EncFsBackend::encfs(const QStringList &arguments) const +@@ -101,12 +101,12 @@ QProcess *EncFsBackend::encfs(const QStringList &arguments) const auto config = KSharedConfig::openConfig(PLASMAVAULT_CONFIG_FILE); KConfigGroup backendConfig(config, "EncfsBackend"); - + - return process("encfs", arguments + backendConfig.readEntry("extraMountOptions", QStringList{}), {}); + return process(NIXPKGS_ENCFS, arguments + backendConfig.readEntry("extraMountOptions", QStringList{}), {}); } - + QProcess *EncFsBackend::encfsctl(const QStringList &arguments) const { - return process("encfsctl", arguments, {}); + return process(NIXPKGS_ENCFSCTL, arguments, {}); } - + } // namespace PlasmaVault +-- +2.33.1 + diff --git a/pkgs/desktops/plasma-5/plasma-vault/0002-cryfs-path.patch b/pkgs/desktops/plasma-5/plasma-vault/0002-cryfs-path.patch new file mode 100644 index 000000000000..4c7567b15076 --- /dev/null +++ b/pkgs/desktops/plasma-5/plasma-vault/0002-cryfs-path.patch @@ -0,0 +1,25 @@ +From a89a0d3f9088d272c01ccb9b730d1dbb500f9cb8 Mon Sep 17 00:00:00 2001 +From: Thomas Tuegel <ttuegel@mailbox.org> +Date: Tue, 2 Nov 2021 05:59:34 -0500 +Subject: [PATCH 2/3] cryfs path + +--- + kded/engine/backends/cryfs/cryfsbackend.cpp | 2 +- + 1 file changed, 1 insertion(+), 1 deletion(-) + +diff --git a/kded/engine/backends/cryfs/cryfsbackend.cpp b/kded/engine/backends/cryfs/cryfsbackend.cpp +index 64138b6..1a9fde2 100644 +--- a/kded/engine/backends/cryfs/cryfsbackend.cpp ++++ b/kded/engine/backends/cryfs/cryfsbackend.cpp +@@ -207,7 +207,7 @@ QProcess *CryFsBackend::cryfs(const QStringList &arguments) const + auto config = KSharedConfig::openConfig(PLASMAVAULT_CONFIG_FILE); + KConfigGroup backendConfig(config, "CryfsBackend"); + +- return process("cryfs", arguments + backendConfig.readEntry("extraMountOptions", QStringList{}), {{"CRYFS_FRONTEND", "noninteractive"}}); ++ return process(NIXPKGS_CRYFS, arguments + backendConfig.readEntry("extraMountOptions", QStringList{}), {{"CRYFS_FRONTEND", "noninteractive"}}); + } + + } // namespace PlasmaVault +-- +2.33.1 + diff --git a/pkgs/desktops/plasma-5/plasma-vault/0003-fusermount-path.patch b/pkgs/desktops/plasma-5/plasma-vault/0003-fusermount-path.patch new file mode 100644 index 000000000000..0d4481c70541 --- /dev/null +++ b/pkgs/desktops/plasma-5/plasma-vault/0003-fusermount-path.patch @@ -0,0 +1,25 @@ +From 63571e28c65935f32567c0b179a096d62726b778 Mon Sep 17 00:00:00 2001 +From: Thomas Tuegel <ttuegel@mailbox.org> +Date: Tue, 2 Nov 2021 06:00:32 -0500 +Subject: [PATCH 3/3] fusermount path + +--- + kded/engine/fusebackend_p.cpp | 2 +- + 1 file changed, 1 insertion(+), 1 deletion(-) + +diff --git a/kded/engine/fusebackend_p.cpp b/kded/engine/fusebackend_p.cpp +index 91f3523..1c19d88 100644 +--- a/kded/engine/fusebackend_p.cpp ++++ b/kded/engine/fusebackend_p.cpp +@@ -86,7 +86,7 @@ QProcess *FuseBackend::process(const QString &executable, const QStringList &arg + + QProcess *FuseBackend::fusermount(const QStringList &arguments) const + { +- return process("fusermount", arguments, {}); ++ return process(NIXPKGS_FUSERMOUNT, arguments, {}); + } + + FutureResult<> FuseBackend::initialize(const QString &name, const Device &device, const MountPoint &mountPoint, const Vault::Payload &payload) +-- +2.33.1 + diff --git a/pkgs/desktops/plasma-5/plasma-vault/cryfs-path.patch b/pkgs/desktops/plasma-5/plasma-vault/cryfs-path.patch deleted file mode 100644 index 6bab35fe4a97..000000000000 --- a/pkgs/desktops/plasma-5/plasma-vault/cryfs-path.patch +++ /dev/null @@ -1,13 +0,0 @@ -diff --git a/kded/engine/backends/cryfs/cryfsbackend.cpp b/kded/engine/backends/cryfs/cryfsbackend.cpp -index 58a6929..7212980 100644 ---- a/kded/engine/backends/cryfs/cryfsbackend.cpp -+++ b/kded/engine/backends/cryfs/cryfsbackend.cpp -@@ -241,7 +241,7 @@ QProcess *CryFsBackend::cryfs(const QStringList &arguments) const - auto config = KSharedConfig::openConfig(PLASMAVAULT_CONFIG_FILE); - KConfigGroup backendConfig(config, "CryfsBackend"); - -- return process("cryfs", -+ return process(NIXPKGS_CRYFS, - arguments + backendConfig.readEntry("extraMountOptions", QStringList{}), - { { "CRYFS_FRONTEND", "noninteractive" } }); - } diff --git a/pkgs/desktops/plasma-5/plasma-vault/default.nix b/pkgs/desktops/plasma-5/plasma-vault/default.nix index e016944be456..453ba2b107a1 100644 --- a/pkgs/desktops/plasma-5/plasma-vault/default.nix +++ b/pkgs/desktops/plasma-5/plasma-vault/default.nix @@ -18,9 +18,9 @@ mkDerivation { nativeBuildInputs = [ extra-cmake-modules ]; patches = [ - ./encfs-path.patch - ./cryfs-path.patch - ./fusermount-path.patch + ./0001-encfs-path.patch + ./0002-cryfs-path.patch + ./0003-fusermount-path.patch ]; buildInputs = [ diff --git a/pkgs/desktops/plasma-5/plasma-vault/fusermount-path.patch b/pkgs/desktops/plasma-5/plasma-vault/fusermount-path.patch deleted file mode 100644 index b2a7866531bf..000000000000 --- a/pkgs/desktops/plasma-5/plasma-vault/fusermount-path.patch +++ /dev/null @@ -1,18 +0,0 @@ -diff --git a/kded/engine/fusebackend_p.cpp b/kded/engine/fusebackend_p.cpp -index d07e313..ea7d81c 100644 ---- a/kded/engine/fusebackend_p.cpp -+++ b/kded/engine/fusebackend_p.cpp -@@ -106,7 +106,7 @@ QProcess *FuseBackend::process(const QString &executable, - - QProcess *FuseBackend::fusermount(const QStringList &arguments) const - { -- return process("fusermount", arguments, {}); -+ return process(NIXPKGS_FUSERMOUNT, arguments, {}); - } - - -@@ -279,4 +279,3 @@ bool FuseBackend::isOpened(const MountPoint &mountPoint) const - } - - } // namespace PlasmaVault -- diff --git a/pkgs/desktops/plasma-5/plasma-workspace/0003-startkde-unit-detection.patch b/pkgs/desktops/plasma-5/plasma-workspace/0003-startkde-unit-detection.patch deleted file mode 100644 index 57779b3f559d..000000000000 --- a/pkgs/desktops/plasma-5/plasma-workspace/0003-startkde-unit-detection.patch +++ /dev/null @@ -1,17 +0,0 @@ -diff --git a/startkde/startplasma.cpp b/startkde/startplasma.cpp -index a17967b47..6e6141b48 100644 ---- a/startkde/startplasma.cpp -+++ b/startkde/startplasma.cpp -@@ -431,7 +431,11 @@ bool hasSystemdService(const QString &serviceName) - QStringLiteral("/org/freedesktop/systemd1"), - QStringLiteral("org.freedesktop.systemd1.Manager"), - QStringLiteral("ListUnitFilesByPatterns")); -- msg << QStringList({QStringLiteral("enabled"), QStringLiteral("static")}) << QStringList({serviceName}); -+ msg << QStringList({QStringLiteral("enabled"), -+ QStringLiteral("static"), -+ QStringLiteral("linked"), -+ QStringLiteral("linked-runtime")}); -+ msg << QStringList({serviceName}); - QDBusReply<QList<QPair<QString, QString>>> reply = QDBusConnection::sessionBus().call(msg); - if (!reply.isValid()) { - return false; diff --git a/pkgs/desktops/plasma-5/plasma-workspace/default.nix b/pkgs/desktops/plasma-5/plasma-workspace/default.nix index f44becda9020..fac10cf31d41 100644 --- a/pkgs/desktops/plasma-5/plasma-workspace/default.nix +++ b/pkgs/desktops/plasma-5/plasma-workspace/default.nix @@ -1,5 +1,5 @@ { - mkDerivation, lib, fetchpatch, + mkDerivation, lib, extra-cmake-modules, kdoctools, @@ -52,13 +52,6 @@ mkDerivation { patches = [ ./0001-startkde.patch ./0002-absolute-wallpaper-install-dir.patch - ./0003-startkde-unit-detection.patch - # Included in 5.23.2 - (fetchpatch { - name = "ignore-placeholder-screens"; - url = "https://invent.kde.org/plasma/plasma-workspace/-/merge_requests/1125.patch"; - sha256 = "sha256-lvcAxb301lQbfEKPcxMlfap9g7TjHOk50ZYX91RC7gY="; - }) ]; # QT_INSTALL_BINS refers to qtbase, and qdbus is in qttools diff --git a/pkgs/desktops/plasma-5/srcs.nix b/pkgs/desktops/plasma-5/srcs.nix index d3df742f9990..70cb748709e9 100644 --- a/pkgs/desktops/plasma-5/srcs.nix +++ b/pkgs/desktops/plasma-5/srcs.nix @@ -4,427 +4,427 @@ { bluedevil = { - version = "5.23.1"; + version = "5.23.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/bluedevil-5.23.1.tar.xz"; - sha256 = "1fxl1v27jk1hnxn7s9cqnw1h0pcghpyr2kxbqlx6fhnk0gp44gra"; - name = "bluedevil-5.23.1.tar.xz"; + url = "${mirror}/stable/plasma/5.23.3/bluedevil-5.23.3.tar.xz"; + sha256 = "1n6h2m4z67vl0mv0hs0g5xff1vcj03w0nhx4hkhy66hly556nq8x"; + name = "bluedevil-5.23.3.tar.xz"; }; }; breeze = { - version = "5.23.1"; + version = "5.23.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/breeze-5.23.1.tar.xz"; - sha256 = "108l31v692f0yp1chbgw7nfjxs9qqyxm491zwg5p1n27jdgxq4dc"; - name = "breeze-5.23.1.tar.xz"; + url = "${mirror}/stable/plasma/5.23.3/breeze-5.23.3.tar.xz"; + sha256 = "1514y4k52bc71nljihj655d7swk2qvr168i0j2xqcm0w4aiz4jmv"; + name = "breeze-5.23.3.tar.xz"; }; }; breeze-grub = { - version = "5.23.1"; + version = "5.23.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/breeze-grub-5.23.1.tar.xz"; - sha256 = "1qmixw5q8i1inx65yn84sc44rbllffmjpzbbrxhjxazfa90kjh63"; - name = "breeze-grub-5.23.1.tar.xz"; + url = "${mirror}/stable/plasma/5.23.3/breeze-grub-5.23.3.tar.xz"; + sha256 = "1nwhjw0nkdg94znh7h80byrq8vpa1f20ph1m4fhlj233nfskw0zy"; + name = "breeze-grub-5.23.3.tar.xz"; }; }; breeze-gtk = { - version = "5.23.1"; + version = "5.23.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/breeze-gtk-5.23.1.tar.xz"; - sha256 = "11yjanh6m52sv717bma5m7is8mmz8raqf3i7xjgd9kiafdbp6rjh"; - name = "breeze-gtk-5.23.1.tar.xz"; + url = "${mirror}/stable/plasma/5.23.3/breeze-gtk-5.23.3.tar.xz"; + sha256 = "0wq313laj7nlsw3d6p1prq1d4gic5lz2ipklj4dq4vsvsh99ggvn"; + name = "breeze-gtk-5.23.3.tar.xz"; }; }; breeze-plymouth = { - version = "5.23.1"; + version = "5.23.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/breeze-plymouth-5.23.1.tar.xz"; - sha256 = "0f4lxp4h2aji2gnrbplvs2xmwca0zcq3z1dm4fa31qy7ipr0b9qw"; - name = "breeze-plymouth-5.23.1.tar.xz"; + url = "${mirror}/stable/plasma/5.23.3/breeze-plymouth-5.23.3.tar.xz"; + sha256 = "047clfgqcrplwi3158pw1r868yyqlxs7iqqy861wzlsmjz9qzqdl"; + name = "breeze-plymouth-5.23.3.tar.xz"; }; }; discover = { - version = "5.23.1"; + version = "5.23.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/discover-5.23.1.tar.xz"; - sha256 = "0wgfws2m5x2bgqcx8h50jhvgj98pmyywr5h3f560mxwd3admq9a4"; - name = "discover-5.23.1.tar.xz"; + url = "${mirror}/stable/plasma/5.23.3/discover-5.23.3.tar.xz"; + sha256 = "056wcvk44r11rycnn12xf8r5psxqnm0f6i6z6nc5100sqkhip6p0"; + name = "discover-5.23.3.tar.xz"; }; }; drkonqi = { - version = "5.23.1"; + version = "5.23.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/drkonqi-5.23.1.tar.xz"; - sha256 = "19fksscf29lw4dvdf4s8z97q60yn77w35qmz298myw0n6cd9n1vk"; - name = "drkonqi-5.23.1.tar.xz"; + url = "${mirror}/stable/plasma/5.23.3/drkonqi-5.23.3.tar.xz"; + sha256 = "14yc6nq3z6jm8siq2r15nzsqxpawk5iqy9ghmmwy9xa4vf18dxy5"; + name = "drkonqi-5.23.3.tar.xz"; }; }; kactivitymanagerd = { - version = "5.23.1"; + version = "5.23.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/kactivitymanagerd-5.23.1.tar.xz"; - sha256 = "02gaky1ibzfkv5gx6hpwksm06jb025k9hb7lqrbp5wbn2j5m3g7a"; - name = "kactivitymanagerd-5.23.1.tar.xz"; + url = "${mirror}/stable/plasma/5.23.3/kactivitymanagerd-5.23.3.tar.xz"; + sha256 = "0rizk05v19qqymrjh7vswcp80a4rpyffmq7kg88pv5k11fcjqw5b"; + name = "kactivitymanagerd-5.23.3.tar.xz"; }; }; kde-cli-tools = { - version = "5.23.1"; + version = "5.23.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/kde-cli-tools-5.23.1.tar.xz"; - sha256 = "1qm7s2zdvq4i8lry736npwfy95xkrhwi6zhmqlb5j21y9g2hh6ns"; - name = "kde-cli-tools-5.23.1.tar.xz"; - }; - }; - kdecoration = { - version = "5.23.1"; - src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/kdecoration-5.23.1.tar.xz"; - sha256 = "09y3n2ifdkcpp21b15pw2k8jfqhwp19rwqyl31il5js36ymsx1qm"; - name = "kdecoration-5.23.1.tar.xz"; + url = "${mirror}/stable/plasma/5.23.3/kde-cli-tools-5.23.3.tar.xz"; + sha256 = "0f8wab6n4klxj4yy4l4k3q3pdqlz9718mbjydnsmn1jgn20shsa0"; + name = "kde-cli-tools-5.23.3.tar.xz"; }; }; kde-gtk-config = { - version = "5.23.1"; + version = "5.23.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/kde-gtk-config-5.23.1.tar.xz"; - sha256 = "0g2p6rnc6qij4mrbz955gpjsda6ck3g0y68rkkkm4849j72pinbx"; - name = "kde-gtk-config-5.23.1.tar.xz"; + url = "${mirror}/stable/plasma/5.23.3/kde-gtk-config-5.23.3.tar.xz"; + sha256 = "12w2jv0mi39c2g1w3g3c68m80ailcm98hibk1mg885r36gx9kskb"; + name = "kde-gtk-config-5.23.3.tar.xz"; + }; + }; + kdecoration = { + version = "5.23.3"; + src = fetchurl { + url = "${mirror}/stable/plasma/5.23.3/kdecoration-5.23.3.tar.xz"; + sha256 = "134jmp5l2bvl042a5a1f1d66mqi4g7vrpmrn3gi7ysi34w1ylfc8"; + name = "kdecoration-5.23.3.tar.xz"; }; }; kdeplasma-addons = { - version = "5.23.1"; + version = "5.23.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/kdeplasma-addons-5.23.1.tar.xz"; - sha256 = "126rrj22431i1immbrvagndi36bfapxcyjrhy6q7qxlg8lwmmvl4"; - name = "kdeplasma-addons-5.23.1.tar.xz"; + url = "${mirror}/stable/plasma/5.23.3/kdeplasma-addons-5.23.3.tar.xz"; + sha256 = "139wzfj21k32m36014sas3ad5qdc0df4131ckj1shlz882w4l3dw"; + name = "kdeplasma-addons-5.23.3.tar.xz"; }; }; kgamma5 = { - version = "5.23.1"; + version = "5.23.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/kgamma5-5.23.1.tar.xz"; - sha256 = "11d5qdhgxn51q7fs0jmaswxm68wygk7b38kj0f1h665fsc56sxfg"; - name = "kgamma5-5.23.1.tar.xz"; + url = "${mirror}/stable/plasma/5.23.3/kgamma5-5.23.3.tar.xz"; + sha256 = "06wzcpsjqy5pw3s6qg32l6qg9jf61bbpjwh802182balfq2jl0y5"; + name = "kgamma5-5.23.3.tar.xz"; }; }; khotkeys = { - version = "5.23.1"; + version = "5.23.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/khotkeys-5.23.1.tar.xz"; - sha256 = "0kz8pgwrcrsqf6zsb3zyx7a4g43svdm7iq6jm9p0ncfjnrl0ks6s"; - name = "khotkeys-5.23.1.tar.xz"; + url = "${mirror}/stable/plasma/5.23.3/khotkeys-5.23.3.tar.xz"; + sha256 = "1ccjlr3q1lsmmdmh30wbrdaardvhivdzm9vrd46d301rdz6gyv86"; + name = "khotkeys-5.23.3.tar.xz"; }; }; kinfocenter = { - version = "5.23.1"; + version = "5.23.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/kinfocenter-5.23.1.tar.xz"; - sha256 = "01690mvak6i7c17ksfar8793c33y7x391pw5bfa0ggm428k8jbz1"; - name = "kinfocenter-5.23.1.tar.xz"; + url = "${mirror}/stable/plasma/5.23.3/kinfocenter-5.23.3.tar.xz"; + sha256 = "09yz5grzwzgs1cg39j18zy7af8azy2lbg4bkkmh7wayv8pngj4gv"; + name = "kinfocenter-5.23.3.tar.xz"; }; }; kmenuedit = { - version = "5.23.1"; + version = "5.23.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/kmenuedit-5.23.1.tar.xz"; - sha256 = "124imx7afbihdp3d10yap6ww9404b63va35h4hfsr5dglfmjfhpk"; - name = "kmenuedit-5.23.1.tar.xz"; + url = "${mirror}/stable/plasma/5.23.3/kmenuedit-5.23.3.tar.xz"; + sha256 = "006kkg7jzwp4icik1hv95wcpw5sb1l1s94wnljvxdfdjkgzjxq55"; + name = "kmenuedit-5.23.3.tar.xz"; }; }; kscreen = { - version = "5.23.1"; + version = "5.23.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/kscreen-5.23.1.tar.xz"; - sha256 = "1j8z8dgp7l0iccyblnq5mf6xysaa17z0ljw9zwvq8ir57cnky55g"; - name = "kscreen-5.23.1.tar.xz"; + url = "${mirror}/stable/plasma/5.23.3/kscreen-5.23.3.tar.xz"; + sha256 = "1x4qlycb1dxw36s3zyyrjfmfvwvwk8f8r0jls6hq8gqkl810abhw"; + name = "kscreen-5.23.3.tar.xz"; }; }; kscreenlocker = { - version = "5.23.1"; + version = "5.23.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/kscreenlocker-5.23.1.tar.xz"; - sha256 = "0qxmmchl73s9ci0b8by5j6ik8aikwd1xcxyfxhp3fhav519i7i50"; - name = "kscreenlocker-5.23.1.tar.xz"; + url = "${mirror}/stable/plasma/5.23.3/kscreenlocker-5.23.3.tar.xz"; + sha256 = "0wjcrikx3q533qz9wi0z3jm4k0lc09w2xsxr4iw1hh3afsd6jr34"; + name = "kscreenlocker-5.23.3.tar.xz"; }; }; ksshaskpass = { - version = "5.23.1"; + version = "5.23.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/ksshaskpass-5.23.1.tar.xz"; - sha256 = "0azb195s2f068k2vj9piby36lh786gvkzvnnajzs74pmqpl8kay1"; - name = "ksshaskpass-5.23.1.tar.xz"; + url = "${mirror}/stable/plasma/5.23.3/ksshaskpass-5.23.3.tar.xz"; + sha256 = "0dcych5zcv8fqmy1lhwpbfzj75ihs648d8ppfr0nj15mm2pgnvhx"; + name = "ksshaskpass-5.23.3.tar.xz"; }; }; ksystemstats = { - version = "5.23.1"; + version = "5.23.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/ksystemstats-5.23.1.tar.xz"; - sha256 = "0zkag07lhrz5d7bwhl4lyj2cxh0is9z8z9lavl1dmwfnjs86a0z6"; - name = "ksystemstats-5.23.1.tar.xz"; + url = "${mirror}/stable/plasma/5.23.3/ksystemstats-5.23.3.tar.xz"; + sha256 = "13jic16480rxhdwz0z49di19sxdi7rgvg61lg5i00w9mm6mbph3l"; + name = "ksystemstats-5.23.3.tar.xz"; }; }; kwallet-pam = { - version = "5.23.1"; + version = "5.23.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/kwallet-pam-5.23.1.tar.xz"; - sha256 = "02jycjh7l437f2r9a2861yd8j7ayy0f63qkda67703p4va412rk3"; - name = "kwallet-pam-5.23.1.tar.xz"; + url = "${mirror}/stable/plasma/5.23.3/kwallet-pam-5.23.3.tar.xz"; + sha256 = "0axxk7szp5kn5hhlxh2mjzbwzaj4g1yn40ymgb6dga10h1nfdkd8"; + name = "kwallet-pam-5.23.3.tar.xz"; }; }; kwayland-integration = { - version = "5.23.1"; + version = "5.23.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/kwayland-integration-5.23.1.tar.xz"; - sha256 = "0shdq4wrb2p7agc1ds6vm49g75bsizsmlwdikq5sqpgzbgv10dgp"; - name = "kwayland-integration-5.23.1.tar.xz"; + url = "${mirror}/stable/plasma/5.23.3/kwayland-integration-5.23.3.tar.xz"; + sha256 = "01gm3xbaih22v33bd9142xnrli13yxmib42pj8rnczhczrpnc3z3"; + name = "kwayland-integration-5.23.3.tar.xz"; }; }; kwayland-server = { - version = "5.23.1"; + version = "5.23.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/kwayland-server-5.23.1.tar.xz"; - sha256 = "0mwxllkqgmvr7lq0kkikndn68y6mxl9hmfm8kjmnq95zq5nimbgb"; - name = "kwayland-server-5.23.1.tar.xz"; + url = "${mirror}/stable/plasma/5.23.3/kwayland-server-5.23.3.tar.xz"; + sha256 = "1hjh278iaz3ydf9bqy2fmm4hsvc60hrqw4hlc3ddcadp28dhg3gx"; + name = "kwayland-server-5.23.3.tar.xz"; }; }; kwin = { - version = "5.23.1"; + version = "5.23.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/kwin-5.23.1.tar.xz"; - sha256 = "0ccbb41xsa257vabd17m3fx9h760izizgy9xrg9mpg5shjmxff2q"; - name = "kwin-5.23.1.tar.xz"; + url = "${mirror}/stable/plasma/5.23.3/kwin-5.23.3.tar.xz"; + sha256 = "04w8vnz3rzd9g1j1f4fbgyxjvxqrhasx6f2vqkrrh4cd56ndmcbz"; + name = "kwin-5.23.3.tar.xz"; }; }; kwrited = { - version = "5.23.1"; + version = "5.23.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/kwrited-5.23.1.tar.xz"; - sha256 = "16sg4mffwhpx5c2dp6zki9128zjpkcyjlm8nd8jdkcdq5ww4f4pk"; - name = "kwrited-5.23.1.tar.xz"; + url = "${mirror}/stable/plasma/5.23.3/kwrited-5.23.3.tar.xz"; + sha256 = "0156syandkq0s76xrrcz6nkxa6jgpf1a6nbkdw0a8biyxs5md644"; + name = "kwrited-5.23.3.tar.xz"; }; }; layer-shell-qt = { - version = "5.23.1"; + version = "5.23.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/layer-shell-qt-5.23.1.tar.xz"; - sha256 = "02lyzc93ymz5jr05sy5pf1aqyx098q3jhzxk28k6fslzxq327767"; - name = "layer-shell-qt-5.23.1.tar.xz"; + url = "${mirror}/stable/plasma/5.23.3/layer-shell-qt-5.23.3.tar.xz"; + sha256 = "15y7p0a59779aqxnsryqirsxslbvbig733i5s3n5jmg98y40712a"; + name = "layer-shell-qt-5.23.3.tar.xz"; }; }; libkscreen = { - version = "5.23.1"; + version = "5.23.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/libkscreen-5.23.1.tar.xz"; - sha256 = "0hyh0j95i0xrbh07770axby3lqhmiclzxwx1bplmnpayymwdac1r"; - name = "libkscreen-5.23.1.tar.xz"; + url = "${mirror}/stable/plasma/5.23.3/libkscreen-5.23.3.tar.xz"; + sha256 = "0kazvsahnk7ngld12lp1c07c34x9kal03fy8g7w9bgdha3j7xmdq"; + name = "libkscreen-5.23.3.tar.xz"; }; }; libksysguard = { - version = "5.23.1"; + version = "5.23.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/libksysguard-5.23.1.tar.xz"; - sha256 = "12c1qy736036rfvk42pnb0z32sjqfk4x4069v7iycy4nd91xyg88"; - name = "libksysguard-5.23.1.tar.xz"; + url = "${mirror}/stable/plasma/5.23.3/libksysguard-5.23.3.tar.xz"; + sha256 = "0ma4b0w08j0f46ivh9grci7wfh4z5j8nml83kcvnain1nwzprha0"; + name = "libksysguard-5.23.3.tar.xz"; }; }; milou = { - version = "5.23.1"; + version = "5.23.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/milou-5.23.1.tar.xz"; - sha256 = "047z4dklk7hixk6m0xw2y2mhrdzmczz1ikhzvxnxhgmghm3w14cg"; - name = "milou-5.23.1.tar.xz"; + url = "${mirror}/stable/plasma/5.23.3/milou-5.23.3.tar.xz"; + sha256 = "0myvm9bkq189cfla7yqiwmbb5z2cm90rq5ll655n2c7zk3lqnn0d"; + name = "milou-5.23.3.tar.xz"; }; }; oxygen = { - version = "5.23.1"; + version = "5.23.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/oxygen-5.23.1.tar.xz"; - sha256 = "0dxj1fr8p6dnlqwr5bs3f8s1g12vndapc8b07h6hzhcwi26wm81f"; - name = "oxygen-5.23.1.tar.xz"; + url = "${mirror}/stable/plasma/5.23.3/oxygen-5.23.3.tar.xz"; + sha256 = "0r79xadvg7l4nsziy78wydhn4f0223fjc2xd60zih1dwmgapgf0z"; + name = "oxygen-5.23.3.tar.xz"; }; }; plasma-browser-integration = { - version = "5.23.1"; + version = "5.23.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/plasma-browser-integration-5.23.1.tar.xz"; - sha256 = "1yaayy60dgj652rjzhh659anspw4cf7rqgmzdw471nzds3zpfr6x"; - name = "plasma-browser-integration-5.23.1.tar.xz"; + url = "${mirror}/stable/plasma/5.23.3/plasma-browser-integration-5.23.3.tar.xz"; + sha256 = "0r3sq6w73qn246nddf4f8lbym8k4wp2ycfr2laz888b5cjf9df97"; + name = "plasma-browser-integration-5.23.3.tar.xz"; }; }; plasma-desktop = { - version = "5.23.1"; + version = "5.23.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/plasma-desktop-5.23.1.tar.xz"; - sha256 = "102fkhmh33xw7w2sq20d5v4576apyqp9dwh8v3nwd8vfjbq6lv7f"; - name = "plasma-desktop-5.23.1.tar.xz"; + url = "${mirror}/stable/plasma/5.23.3/plasma-desktop-5.23.3.tar.xz"; + sha256 = "01259pqncx3gcpanrmhal51dn4y8xcrs16pl5bjnasdn9r8mlhs3"; + name = "plasma-desktop-5.23.3.tar.xz"; }; }; plasma-disks = { - version = "5.23.1"; + version = "5.23.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/plasma-disks-5.23.1.tar.xz"; - sha256 = "11cssgdz4h9ln4738gphg544f9jmzmzax3chq1pp7dzk8cgh4fxq"; - name = "plasma-disks-5.23.1.tar.xz"; + url = "${mirror}/stable/plasma/5.23.3/plasma-disks-5.23.3.tar.xz"; + sha256 = "1qwxhasmycn6ah2pv46z8vvls85lfwxm4z61q13l63a50489a05b"; + name = "plasma-disks-5.23.3.tar.xz"; }; }; plasma-firewall = { - version = "5.23.1"; + version = "5.23.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/plasma-firewall-5.23.1.tar.xz"; - sha256 = "066b36kxycffwmhgls51q8hpww06j2v2hcc9z4bzmix7jhpzkk0w"; - name = "plasma-firewall-5.23.1.tar.xz"; + url = "${mirror}/stable/plasma/5.23.3/plasma-firewall-5.23.3.tar.xz"; + sha256 = "0kqb7sxysh6gq143rmmznv95mx4275bp1xfrlys518yn97clnwqq"; + name = "plasma-firewall-5.23.3.tar.xz"; }; }; plasma-integration = { - version = "5.23.1"; + version = "5.23.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/plasma-integration-5.23.1.tar.xz"; - sha256 = "0wfbvp6r6nh7x8q4ddhf19bnkvlcspcxy2hjsb2nnr0nvs3k8aya"; - name = "plasma-integration-5.23.1.tar.xz"; + url = "${mirror}/stable/plasma/5.23.3/plasma-integration-5.23.3.tar.xz"; + sha256 = "0q53b43yl5s1pvlqpmic2x8q5inawk66n8wng7rzgcfv9d3imhrn"; + name = "plasma-integration-5.23.3.tar.xz"; }; }; plasma-nano = { - version = "5.23.1"; + version = "5.23.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/plasma-nano-5.23.1.tar.xz"; - sha256 = "1ybd12jkw3sbcqzv8pqmkrvww1l73igb907zv457ha5rwy9hi60a"; - name = "plasma-nano-5.23.1.tar.xz"; + url = "${mirror}/stable/plasma/5.23.3/plasma-nano-5.23.3.tar.xz"; + sha256 = "0ijygajn78c97s8ys8m2zn52zx45kxhk857hppkxp4jqpd5psf34"; + name = "plasma-nano-5.23.3.tar.xz"; }; }; plasma-nm = { - version = "5.23.1"; + version = "5.23.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/plasma-nm-5.23.1.tar.xz"; - sha256 = "0qsh5wrk97i9nxpp3la6fp6fvrk0f0gxh71nrzr0c9bc7307imfi"; - name = "plasma-nm-5.23.1.tar.xz"; + url = "${mirror}/stable/plasma/5.23.3/plasma-nm-5.23.3.tar.xz"; + sha256 = "157almdi3br1qdfr0lwfdwc60fbizkwmpw3j2czk2sdsvm58rhgf"; + name = "plasma-nm-5.23.3.tar.xz"; }; }; plasma-pa = { - version = "5.23.1"; + version = "5.23.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/plasma-pa-5.23.1.tar.xz"; - sha256 = "0zm5clsj9lfdv0v80g7bzb2cldcghaqn0d9nwywwrpmclmqik7x7"; - name = "plasma-pa-5.23.1.tar.xz"; + url = "${mirror}/stable/plasma/5.23.3/plasma-pa-5.23.3.tar.xz"; + sha256 = "0md3vb2iffn4qdnj4msyn6j3hvidnsxzp2dfsnb3n0yp29niwxqk"; + name = "plasma-pa-5.23.3.tar.xz"; }; }; plasma-phone-components = { - version = "5.23.1"; + version = "5.23.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/plasma-phone-components-5.23.1.tar.xz"; - sha256 = "174wvb5jrzsfmn09q4qspf3rdi5nr6faf2n1zc9p1dkwn67pkml2"; - name = "plasma-phone-components-5.23.1.tar.xz"; + url = "${mirror}/stable/plasma/5.23.3/plasma-phone-components-5.23.3.tar.xz"; + sha256 = "1w8yqczr0933vhca5id32vg1k2np6n6hkh58n4x3z3xpdxpb5d4c"; + name = "plasma-phone-components-5.23.3.tar.xz"; }; }; plasma-sdk = { - version = "5.23.1"; + version = "5.23.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/plasma-sdk-5.23.1.tar.xz"; - sha256 = "1sqywr9d6ghyyff713z1v45207ivddda5hxd7dzpxaf36nb3imq0"; - name = "plasma-sdk-5.23.1.tar.xz"; + url = "${mirror}/stable/plasma/5.23.3/plasma-sdk-5.23.3.tar.xz"; + sha256 = "0fb9g6vhsaxd6h6889jyhnxp86g7rwkmyiafq72hx6ikv69wyvbi"; + name = "plasma-sdk-5.23.3.tar.xz"; }; }; plasma-systemmonitor = { - version = "5.23.1"; + version = "5.23.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/plasma-systemmonitor-5.23.1.tar.xz"; - sha256 = "1kqrkjz8iks5h737a6hpbb104gbaxangrwlzjfgi2h280j2288f8"; - name = "plasma-systemmonitor-5.23.1.tar.xz"; + url = "${mirror}/stable/plasma/5.23.3/plasma-systemmonitor-5.23.3.tar.xz"; + sha256 = "1jlgfrkdw785x9bib2hzxjyd70b9aqgcp1w6lk75bhgkrz85kz8p"; + name = "plasma-systemmonitor-5.23.3.tar.xz"; }; }; plasma-tests = { - version = "5.23.1"; + version = "5.23.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/plasma-tests-5.23.1.tar.xz"; - sha256 = "1cnn9s9cw6p5aidbsj7ysarcp9jdlxpa54zm0gy9cxp5jbz4hypm"; - name = "plasma-tests-5.23.1.tar.xz"; + url = "${mirror}/stable/plasma/5.23.3/plasma-tests-5.23.3.tar.xz"; + sha256 = "1fgl09c0ir8w128z4l0bggszjsvsqncb42k44vn6i6d0qdisxdgh"; + name = "plasma-tests-5.23.3.tar.xz"; }; }; plasma-thunderbolt = { - version = "5.23.1"; + version = "5.23.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/plasma-thunderbolt-5.23.1.tar.xz"; - sha256 = "138irsg1mqq31i9rn0ddrhbjym23c1r1w5y1mhrvaqwxqqd5yp0a"; - name = "plasma-thunderbolt-5.23.1.tar.xz"; + url = "${mirror}/stable/plasma/5.23.3/plasma-thunderbolt-5.23.3.tar.xz"; + sha256 = "0vzdzsl6isg24j0830lg7is47kpmpvsni7gf4vri2l8a6fy7ibav"; + name = "plasma-thunderbolt-5.23.3.tar.xz"; }; }; plasma-vault = { - version = "5.23.1"; + version = "5.23.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/plasma-vault-5.23.1.tar.xz"; - sha256 = "0kwcbdm48pg907sah734xnknsa8azlpasxnj9xnagqi91kly5ay5"; - name = "plasma-vault-5.23.1.tar.xz"; + url = "${mirror}/stable/plasma/5.23.3/plasma-vault-5.23.3.tar.xz"; + sha256 = "061zq00mz1aamam4pc4kbbzdx4mi07iiach6w52n0c9d1bz16ym2"; + name = "plasma-vault-5.23.3.tar.xz"; }; }; plasma-workspace = { - version = "5.23.1"; + version = "5.23.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/plasma-workspace-5.23.1.tar.xz"; - sha256 = "1bggh6xrlcxa5yh5398a2bhrgqnzv6hw6ifwws7wrkdkazw7kygv"; - name = "plasma-workspace-5.23.1.tar.xz"; + url = "${mirror}/stable/plasma/5.23.3/plasma-workspace-5.23.3.tar.xz"; + sha256 = "0mz2aanm46s88lwm1s2nwm8yfanj78rnx1y14ppzm4dx0lrjx046"; + name = "plasma-workspace-5.23.3.tar.xz"; }; }; plasma-workspace-wallpapers = { - version = "5.23.1"; + version = "5.23.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/plasma-workspace-wallpapers-5.23.1.tar.xz"; - sha256 = "1aplxn4kd48rc5p7x5218iscwlp2sr2sh5qyyl43z28fns0bh9pv"; - name = "plasma-workspace-wallpapers-5.23.1.tar.xz"; + url = "${mirror}/stable/plasma/5.23.3/plasma-workspace-wallpapers-5.23.3.tar.xz"; + sha256 = "1kz4xqzgwnhp1wmqmgadn0jjc9033i2bm8hiycqkahhj603k552s"; + name = "plasma-workspace-wallpapers-5.23.3.tar.xz"; }; }; plymouth-kcm = { - version = "5.23.1"; + version = "5.23.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/plymouth-kcm-5.23.1.tar.xz"; - sha256 = "1fdsw7mfcfa90598981w2yb23nbwjqh9ncr8y0ab0l3i0qf8c727"; - name = "plymouth-kcm-5.23.1.tar.xz"; + url = "${mirror}/stable/plasma/5.23.3/plymouth-kcm-5.23.3.tar.xz"; + sha256 = "1fa26h19g4f2fhpisp1jsl1niis50fbkdss7j1nqg44jih0g0qyf"; + name = "plymouth-kcm-5.23.3.tar.xz"; }; }; polkit-kde-agent = { - version = "1-5.23.1"; + version = "1-5.23.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/polkit-kde-agent-1-5.23.1.tar.xz"; - sha256 = "0agmrd64jpvkiy4636hyi7cv9wrj7w6krqihz3d6fm84gqiifrj1"; - name = "polkit-kde-agent-1-5.23.1.tar.xz"; + url = "${mirror}/stable/plasma/5.23.3/polkit-kde-agent-1-5.23.3.tar.xz"; + sha256 = "1r5sqxzj5r9xqn3iwsfj06f1w69q41j4wq2z11kndnjad0pwrf3r"; + name = "polkit-kde-agent-1-5.23.3.tar.xz"; }; }; powerdevil = { - version = "5.23.1"; + version = "5.23.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/powerdevil-5.23.1.tar.xz"; - sha256 = "15n0xm2yzwinjs33iwgg3jln7ddrc3rvj4m97ya3j16bsqw5j6kj"; - name = "powerdevil-5.23.1.tar.xz"; + url = "${mirror}/stable/plasma/5.23.3/powerdevil-5.23.3.tar.xz"; + sha256 = "0hcb22dy4hslzrk3md6amzm51hlmv08747f34x5drdl10cg98mzb"; + name = "powerdevil-5.23.3.tar.xz"; }; }; qqc2-breeze-style = { - version = "5.23.1"; + version = "5.23.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/qqc2-breeze-style-5.23.1.tar.xz"; - sha256 = "087mqgs9gdrwykqncvm0vvwhrnl77qilp89gmcgkr44kdsnp5682"; - name = "qqc2-breeze-style-5.23.1.tar.xz"; + url = "${mirror}/stable/plasma/5.23.3/qqc2-breeze-style-5.23.3.tar.xz"; + sha256 = "0716mw6dgpzwkaiinp8vphvxj3vrb95v7zckh4pgdky8ahxv655l"; + name = "qqc2-breeze-style-5.23.3.tar.xz"; }; }; sddm-kcm = { - version = "5.23.1"; + version = "5.23.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/sddm-kcm-5.23.1.tar.xz"; - sha256 = "0i40yj686dfrvkd78msczzh9ffslccnjgmwps29rz1fr8kvjj9mp"; - name = "sddm-kcm-5.23.1.tar.xz"; + url = "${mirror}/stable/plasma/5.23.3/sddm-kcm-5.23.3.tar.xz"; + sha256 = "0sb9sjdbhafjcx2nf2ffzjh14gyambj1w32gjz29fl15xjbmvqnr"; + name = "sddm-kcm-5.23.3.tar.xz"; }; }; systemsettings = { - version = "5.23.1"; + version = "5.23.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/systemsettings-5.23.1.tar.xz"; - sha256 = "0m3fvxr9l1whdgkd9i3wc2gw6yb12di59ihkdxnbbir5j4qm3m3w"; - name = "systemsettings-5.23.1.tar.xz"; + url = "${mirror}/stable/plasma/5.23.3/systemsettings-5.23.3.tar.xz"; + sha256 = "0i8vc1y95jd3g5vcgzixd73mn1r9s2jg9ix5nwfq4i5ihi0a0ph1"; + name = "systemsettings-5.23.3.tar.xz"; }; }; xdg-desktop-portal-kde = { - version = "5.23.1"; + version = "5.23.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.1/xdg-desktop-portal-kde-5.23.1.tar.xz"; - sha256 = "1bpjq6nd7yc3az9zl13jq088jp2zbdgzqdaxl69wszzaq324qrpp"; - name = "xdg-desktop-portal-kde-5.23.1.tar.xz"; + url = "${mirror}/stable/plasma/5.23.3/xdg-desktop-portal-kde-5.23.3.tar.xz"; + sha256 = "1aajlgccl1z9m49a016ixr2hiy231wyx6xnmpbvjx9h1b52b3rpz"; + name = "xdg-desktop-portal-kde-5.23.3.tar.xz"; }; }; } diff --git a/pkgs/development/compilers/adoptopenjdk-bin/jdk11-darwin.nix b/pkgs/development/compilers/adoptopenjdk-bin/jdk11-darwin.nix index 7fec8fd3ff60..1fd2fd8dc09e 100644 --- a/pkgs/development/compilers/adoptopenjdk-bin/jdk11-darwin.nix +++ b/pkgs/development/compilers/adoptopenjdk-bin/jdk11-darwin.nix @@ -1,5 +1,7 @@ +{ lib }: + let - sources = builtins.fromJSON (builtins.readFile ./sources.json); + sources = lib.importJSON ./sources.json; in { jdk-hotspot = import ./jdk-darwin-base.nix { sourcePerArch = sources.openjdk11.mac.jdk.hotspot; }; diff --git a/pkgs/development/compilers/adoptopenjdk-bin/jdk11-linux.nix b/pkgs/development/compilers/adoptopenjdk-bin/jdk11-linux.nix index e802e2eea528..da5e9c49d236 100644 --- a/pkgs/development/compilers/adoptopenjdk-bin/jdk11-linux.nix +++ b/pkgs/development/compilers/adoptopenjdk-bin/jdk11-linux.nix @@ -1,5 +1,7 @@ +{ lib }: + let - sources = builtins.fromJSON (builtins.readFile ./sources.json); + sources = lib.importJSON ./sources.json; in { jdk-hotspot = import ./jdk-linux-base.nix { sourcePerArch = sources.openjdk11.linux.jdk.hotspot; }; diff --git a/pkgs/development/compilers/adoptopenjdk-bin/jdk13-darwin.nix b/pkgs/development/compilers/adoptopenjdk-bin/jdk13-darwin.nix index 2654c4f9e726..fdde25bd361d 100644 --- a/pkgs/development/compilers/adoptopenjdk-bin/jdk13-darwin.nix +++ b/pkgs/development/compilers/adoptopenjdk-bin/jdk13-darwin.nix @@ -1,5 +1,7 @@ +{ lib }: + let - sources = builtins.fromJSON (builtins.readFile ./sources.json); + sources = lib.importJSON ./sources.json; in { jdk-hotspot = import ./jdk-darwin-base.nix { sourcePerArch = sources.openjdk13.mac.jdk.hotspot; knownVulnerabilities = ["Support ended"]; }; diff --git a/pkgs/development/compilers/adoptopenjdk-bin/jdk13-linux.nix b/pkgs/development/compilers/adoptopenjdk-bin/jdk13-linux.nix index c33d6afad102..f503b03a833c 100644 --- a/pkgs/development/compilers/adoptopenjdk-bin/jdk13-linux.nix +++ b/pkgs/development/compilers/adoptopenjdk-bin/jdk13-linux.nix @@ -1,5 +1,7 @@ +{ lib }: + let - sources = builtins.fromJSON (builtins.readFile ./sources.json); + sources = lib.importJSON ./sources.json; in { jdk-hotspot = import ./jdk-linux-base.nix { sourcePerArch = sources.openjdk13.linux.jdk.hotspot; knownVulnerabilities = ["Support ended"]; }; diff --git a/pkgs/development/compilers/adoptopenjdk-bin/jdk14-darwin.nix b/pkgs/development/compilers/adoptopenjdk-bin/jdk14-darwin.nix index 6941a6dd0ddf..1c776f69e2db 100644 --- a/pkgs/development/compilers/adoptopenjdk-bin/jdk14-darwin.nix +++ b/pkgs/development/compilers/adoptopenjdk-bin/jdk14-darwin.nix @@ -1,5 +1,7 @@ +{ lib }: + let - sources = builtins.fromJSON (builtins.readFile ./sources.json); + sources = lib.importJSON ./sources.json; in { jdk-hotspot = import ./jdk-darwin-base.nix { sourcePerArch = sources.openjdk14.mac.jdk.hotspot; knownVulnerabilities = ["Support ended"]; }; diff --git a/pkgs/development/compilers/adoptopenjdk-bin/jdk14-linux.nix b/pkgs/development/compilers/adoptopenjdk-bin/jdk14-linux.nix index 756b419434df..a55a708b3726 100644 --- a/pkgs/development/compilers/adoptopenjdk-bin/jdk14-linux.nix +++ b/pkgs/development/compilers/adoptopenjdk-bin/jdk14-linux.nix @@ -1,5 +1,7 @@ +{ lib }: + let - sources = builtins.fromJSON (builtins.readFile ./sources.json); + sources = lib.importJSON ./sources.json; in { jdk-hotspot = import ./jdk-linux-base.nix { sourcePerArch = sources.openjdk14.linux.jdk.hotspot; knownVulnerabilities = ["Support ended"]; }; diff --git a/pkgs/development/compilers/adoptopenjdk-bin/jdk15-darwin.nix b/pkgs/development/compilers/adoptopenjdk-bin/jdk15-darwin.nix index d627fd9311f8..b9d706653065 100644 --- a/pkgs/development/compilers/adoptopenjdk-bin/jdk15-darwin.nix +++ b/pkgs/development/compilers/adoptopenjdk-bin/jdk15-darwin.nix @@ -1,5 +1,7 @@ +{ lib }: + let - sources = builtins.fromJSON (builtins.readFile ./sources.json); + sources = lib.importJSON ./sources.json; in { jdk-hotspot = import ./jdk-darwin-base.nix { sourcePerArch = sources.openjdk15.mac.jdk.hotspot; }; diff --git a/pkgs/development/compilers/adoptopenjdk-bin/jdk15-linux.nix b/pkgs/development/compilers/adoptopenjdk-bin/jdk15-linux.nix index 6663d9778bc2..e248555a6d02 100644 --- a/pkgs/development/compilers/adoptopenjdk-bin/jdk15-linux.nix +++ b/pkgs/development/compilers/adoptopenjdk-bin/jdk15-linux.nix @@ -1,5 +1,7 @@ +{ lib }: + let - sources = builtins.fromJSON (builtins.readFile ./sources.json); + sources = lib.importJSON ./sources.json; in { jdk-hotspot = import ./jdk-linux-base.nix { sourcePerArch = sources.openjdk15.linux.jdk.hotspot; }; diff --git a/pkgs/development/compilers/adoptopenjdk-bin/jdk16-darwin.nix b/pkgs/development/compilers/adoptopenjdk-bin/jdk16-darwin.nix index b2bf2877c8a8..a7473710d14b 100644 --- a/pkgs/development/compilers/adoptopenjdk-bin/jdk16-darwin.nix +++ b/pkgs/development/compilers/adoptopenjdk-bin/jdk16-darwin.nix @@ -1,5 +1,7 @@ +{ lib }: + let - sources = builtins.fromJSON (builtins.readFile ./sources.json); + sources = lib.importJSON ./sources.json; in { jdk-hotspot = import ./jdk-darwin-base.nix { sourcePerArch = sources.openjdk16.mac.jdk.hotspot; }; diff --git a/pkgs/development/compilers/adoptopenjdk-bin/jdk16-linux.nix b/pkgs/development/compilers/adoptopenjdk-bin/jdk16-linux.nix index 738b31fe1d12..794545ea80a0 100644 --- a/pkgs/development/compilers/adoptopenjdk-bin/jdk16-linux.nix +++ b/pkgs/development/compilers/adoptopenjdk-bin/jdk16-linux.nix @@ -1,5 +1,7 @@ +{ lib }: + let - sources = builtins.fromJSON (builtins.readFile ./sources.json); + sources = lib.importJSON ./sources.json; in { jdk-hotspot = import ./jdk-linux-base.nix { sourcePerArch = sources.openjdk16.linux.jdk.hotspot; }; diff --git a/pkgs/development/compilers/adoptopenjdk-bin/jdk8-darwin.nix b/pkgs/development/compilers/adoptopenjdk-bin/jdk8-darwin.nix index 5e2d42276ce7..846870869910 100644 --- a/pkgs/development/compilers/adoptopenjdk-bin/jdk8-darwin.nix +++ b/pkgs/development/compilers/adoptopenjdk-bin/jdk8-darwin.nix @@ -1,5 +1,7 @@ +{ lib }: + let - sources = builtins.fromJSON (builtins.readFile ./sources.json); + sources = lib.importJSON ./sources.json; in { jdk-hotspot = import ./jdk-darwin-base.nix { sourcePerArch = sources.openjdk8.mac.jdk.hotspot; }; diff --git a/pkgs/development/compilers/adoptopenjdk-bin/jdk8-linux.nix b/pkgs/development/compilers/adoptopenjdk-bin/jdk8-linux.nix index c2a4085f730c..67b50220ba2d 100644 --- a/pkgs/development/compilers/adoptopenjdk-bin/jdk8-linux.nix +++ b/pkgs/development/compilers/adoptopenjdk-bin/jdk8-linux.nix @@ -1,5 +1,7 @@ +{ lib }: + let - sources = builtins.fromJSON (builtins.readFile ./sources.json); + sources = lib.importJSON ./sources.json; in { jdk-hotspot = import ./jdk-linux-base.nix { sourcePerArch = sources.openjdk8.linux.jdk.hotspot; }; diff --git a/pkgs/development/compilers/apache-flex-sdk/default.nix b/pkgs/development/compilers/apache-flex-sdk/default.nix index 5b5b21aa73d7..527b800551eb 100644 --- a/pkgs/development/compilers/apache-flex-sdk/default.nix +++ b/pkgs/development/compilers/apache-flex-sdk/default.nix @@ -11,7 +11,7 @@ in stdenv.mkDerivation rec { version = "4.16.1"; src = fetchurl { - url = "https://www.apache.org/dist/flex/${version}/binaries/${pname}-${version}-bin.tar.gz"; + url = "mirror://apache/flex/${version}/binaries/${pname}-${version}-bin.tar.gz"; sha256 = "13iq16dqvgcpb0p35x66hzxsq5pkbr2lbwr766nnqiryinnagz8p"; }; diff --git a/pkgs/development/compilers/asl/default.nix b/pkgs/development/compilers/asl/default.nix index 981dde1e7a73..b02847b05939 100644 --- a/pkgs/development/compilers/asl/default.nix +++ b/pkgs/development/compilers/asl/default.nix @@ -1,7 +1,7 @@ { lib , stdenv , fetchzip -, buildDocs? false, tex +, buildDocs ? false, tex }: stdenv.mkDerivation rec { @@ -14,7 +14,7 @@ stdenv.mkDerivation rec { hash = "sha256-Sbm16JX7kC/7Ws7YgNBUXNqOCl6u+RXgfNjTODhCzSM="; }; - nativeBuildInputs = lib.optional buildDocs [ tex ]; + nativeBuildInputs = lib.optionals buildDocs [ tex ]; postPatch = lib.optionalString (!buildDocs) '' substituteInPlace Makefile --replace "all: binaries docs" "all: binaries" @@ -32,10 +32,6 @@ stdenv.mkDerivation rec { mkdir -p .objdir ''; - hardenedDisable = [ "all" ]; - - # buildTargets = [ "binaries" "docs" ]; - meta = with lib; { homepage = "http://john.ccac.rwth-aachen.de:8000/as/index.html"; description = "Portable macro cross assembler"; diff --git a/pkgs/development/compilers/binaryen/default.nix b/pkgs/development/compilers/binaryen/default.nix index 533be220633f..3efc0f1ceab3 100644 --- a/pkgs/development/compilers/binaryen/default.nix +++ b/pkgs/development/compilers/binaryen/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "binaryen"; - version = "101"; + version = "102"; src = fetchFromGitHub { owner = "WebAssembly"; repo = "binaryen"; rev = "version_${version}"; - sha256 = "sha256-rNiZQIQqNbc1P2A6UTn0dRHeT3BS+nv1o81aPaJy+5U="; + sha256 = "sha256-UlktpY9tyjYNkmiBZM42QGg67kcPo7VDy2B4Ty1YIew="; }; nativeBuildInputs = [ cmake python3 ]; diff --git a/pkgs/development/compilers/carp/default.nix b/pkgs/development/compilers/carp/default.nix index d83e70a703aa..fa2b4ebd620f 100644 --- a/pkgs/development/compilers/carp/default.nix +++ b/pkgs/development/compilers/carp/default.nix @@ -1,15 +1,14 @@ { lib, fetchFromGitHub, makeWrapper, clang, haskellPackages }: haskellPackages.mkDerivation rec { - pname = "carp"; - version = "0.5.0"; + version = "0.5.3"; src = fetchFromGitHub { owner = "carp-lang"; repo = "Carp"; rev = "v${version}"; - sha256 = "sha256-nTSMY8bq0b/JvE/XQGDC4St2sqdni12E5WQU5FXnuCg="; + sha256 = "08ryk30ii24qsdpdq7bqi406ynv9nr8zy2pcv9n70ar8fxfw0859"; }; buildTools = [ makeWrapper ]; diff --git a/pkgs/development/compilers/chez/default.nix b/pkgs/development/compilers/chez/default.nix index c1c8eced83ba..a02256697daf 100644 --- a/pkgs/development/compilers/chez/default.nix +++ b/pkgs/development/compilers/chez/default.nix @@ -73,6 +73,6 @@ stdenv.mkDerivation rec { license = lib.licenses.asl20; maintainers = with lib.maintainers; [ thoughtpolice ]; platforms = lib.platforms.unix; - badPlatforms = [ "aarch64-linux" ]; + badPlatforms = [ "aarch64-linux" "aarch64-darwin" ]; }; } diff --git a/pkgs/development/compilers/closure/default.nix b/pkgs/development/compilers/closure/default.nix index eb8c898e09ed..c967af75bf22 100644 --- a/pkgs/development/compilers/closure/default.nix +++ b/pkgs/development/compilers/closure/default.nix @@ -5,7 +5,7 @@ stdenv.mkDerivation rec { version = "20210808"; src = fetchurl { - url = "https://repo1.maven.org/maven2/com/google/javascript/closure-compiler/v${version}/closure-compiler-v${version}.jar"; + url = "mirror://maven/com/google/javascript/closure-compiler/v${version}/closure-compiler-v${version}.jar"; sha256 = "1cvibvm8l4mp64ml6lpsh3w62bgbr42pi3i7ga8ss0prhr0dsk3y"; }; diff --git a/pkgs/development/compilers/cudatoolkit/common.nix b/pkgs/development/compilers/cudatoolkit/common.nix index 585277064ab1..f408d7b33121 100644 --- a/pkgs/development/compilers/cudatoolkit/common.nix +++ b/pkgs/development/compilers/cudatoolkit/common.nix @@ -100,14 +100,14 @@ stdenv.mkDerivation rec { mv * $out/ ''} ${lib.optionalString (lib.versionAtLeast version "11") '' - mkdir -p $out/bin $out/lib64 $out/include $out/doc + mkdir -p $out/bin $out/lib64 $out/include $doc for dir in pkg/builds/* pkg/builds/cuda_nvcc/nvvm pkg/builds/cuda_cupti/extras/CUPTI; do if [ -d $dir/bin ]; then mv $dir/bin/* $out/bin fi if [ -d $dir/doc ]; then - (cd $dir/doc && find . -type d -exec mkdir -p $out/doc/\{} \;) - (cd $dir/doc && find . \( -type f -o -type l \) -exec mv \{} $out/doc/\{} \;) + (cd $dir/doc && find . -type d -exec mkdir -p $doc/\{} \;) + (cd $dir/doc && find . \( -type f -o -type l \) -exec mv \{} $doc/\{} \;) fi if [ -L $dir/include ] || [ -d $dir/include ]; then (cd $dir/include && find . -type d -exec mkdir -p $out/include/\{} \;) diff --git a/pkgs/development/compilers/cudatoolkit/default.nix b/pkgs/development/compilers/cudatoolkit/default.nix index 1747f16f12d1..33a386cfb926 100644 --- a/pkgs/development/compilers/cudatoolkit/default.nix +++ b/pkgs/development/compilers/cudatoolkit/default.nix @@ -66,11 +66,18 @@ rec { }; cudatoolkit_11_4 = common { - version = "11.4.1"; - url = "https://developer.download.nvidia.com/compute/cuda/11.4.1/local_installers/cuda_11.4.1_470.57.02_linux.run"; - sha256 = "0180pb1zfajb9l6blr467xkx01yp3snfwm2xix8x52crf6d36v6x"; + version = "11.4.2"; + url = "https://developer.download.nvidia.com/compute/cuda/11.4.2/local_installers/cuda_11.4.2_470.57.02_linux.run"; + sha256 = "sha256-u9h8oOkT+DdFSnljZ0c1E83e9VUILk2G7Zo4ZZzIHwo="; gcc = gcc10; # can bump to 11 along with stdenv.cc }; - cudatoolkit_11 = cudatoolkit_11_2; + cudatoolkit_11_5 = common { + version = "11.5.0"; + url = "https://developer.download.nvidia.com/compute/cuda/11.5.0/local_installers/cuda_11.5.0_495.29.05_linux.run"; + sha256 = "sha256-rgoWk9lJfPPYHmlIlD43lGNpANtxyY1Y7v2sr38aHkw="; + gcc = gcc10; # can bump to 11 along with stdenv.cc + }; + + cudatoolkit_11 = cudatoolkit_11_4; } diff --git a/pkgs/development/compilers/dev86/default.nix b/pkgs/development/compilers/dev86/default.nix index cea9ea37b4e5..2e6b0d3f68f1 100644 --- a/pkgs/development/compilers/dev86/default.nix +++ b/pkgs/development/compilers/dev86/default.nix @@ -13,9 +13,17 @@ stdenv.mkDerivation rec { makeFlags = [ "PREFIX=$(out)" ]; + # Parallel builds are not supported due to build process structure: + # tools are built sequentially in submakefiles and are reusing the + # same targets as dependencies. Building dependencies in parallel + # from different submakes is not synchronized and fails: + # make[3]: Entering directory '/build/dev86-0.16.21/libc' + # Unable to execute as86. + enableParallelBuilding = false; + meta = { description = "Linux 8086 development environment"; - homepage = "http://v3.sk/~lkundrak/dev86/"; + homepage = "https://github.com/lkundrak/dev86"; platforms = lib.platforms.linux; }; } diff --git a/pkgs/development/compilers/dotnet/default.nix b/pkgs/development/compilers/dotnet/default.nix index 1b34a5953c89..62a08b145bfb 100644 --- a/pkgs/development/compilers/dotnet/default.nix +++ b/pkgs/development/compilers/dotnet/default.nix @@ -79,35 +79,35 @@ rec { }; }; - # v6.0 (RC) + # v6.0 aspnetcore_6_0 = buildAspNetCore { - version = "6.0.0-rc.2.21480.10"; + version = "6.0.0"; sha512 = { - x86_64-linux = "d48895237644a3999663b2e16baa2303d8b77f66385a04d8edb5601fdffacce18b1b1318827d09f74f6b133ff2c179ef659bd21cf8460289b5f81f404fa8b326"; - aarch64-linux = "3a92e93a8cb0c186f1c4a822d46a37604bc470599dbcbe05a7f1ea7c7d1dd9c0e6571de524de8729d19d237078742a0b4e3a1daa11b5eb5f8cce74b69710ada4"; - x86_64-darwin = "ed1cad94acf207d0f18201af1e0e6c386466f94b8fd0474dc8d59f47d8f3c456f3a55de392dda126e0e1f4f934249b0e17b7b86f6bc7c510dc475324ee1395f0"; - aarch64-darwin = "688879db73aa6b7556da70907920f3e443dff54bf8624030352ed5ba3896cceda69040ef359dacf55d50cc52fc2c75057d259a1cc11a2258d4446ebbd2200820"; + x86_64-linux = "6a1ae878efdc9f654e1914b0753b710c3780b646ac160fb5a68850b2fd1101675dc71e015dbbea6b4fcf1edac0822d3f7d470e9ed533dd81d0cfbcbbb1745c6c"; + aarch64-linux = "e61eade344b686180b8a709229d6b3180ea6f085523e5e4e4b0d23dd00cf9edce3e51a920c986b1bab7d04d8cab5aae219c3b533b6feb84b32a02810936859b0"; + x86_64-darwin = "76029272ff50fbf9fcc513109b98c0db5f74dbf970c1380be4dfac0dae7558824d68a167d0a8ceb39042ff4a7ca973cdcc15afed2d1ffef55b0adba8e40c9073"; + aarch64-darwin = "e459ddf33243d680baecc5378b9c4182daf42b8c36a9a996205d91146a614d048a385f953c43727350ad55b1221c5f5d43b383d03e3883e862bf12faeaa02dfb"; }; }; runtime_6_0 = buildNetRuntime { - version = "6.0.0-rc.2.21480.5"; + version = "6.0.0"; sha512 = { - x86_64-linux = "45062417c6111af4d635868927e8f69d43f66c9e0f111cb71c1861eaf5ceda4aefa99d97c6ce3b13fac2bc7c57c435e6f8b2d43c51a3bb3304b42081d98f7047"; - aarch64-linux = "b0f8128d994b0de0c72b9dd8083a7350218adfafedc643c59b497fa605420602004d9e21e8acb488d92bc498f9783a3240cfcafa77443eb6f08b66aadc4f5b65"; - x86_64-darwin = "0f702645719af5a4f1e720c0f2a0c67c7a4a84fac525b3ac6ce6357ca6d44405aeca674d04d8a976a7338ddf8782350debd53dce85e614c837106ffadf84cfb9"; - aarch64-darwin = "747abb8eaad53e0ca7e5b2908b620076fa68a75c5e822361483ed13f7544e31def26bbf67bb85f47633e2dddde9cb095503bf70d1a4b0b2f33c6ef6f887d95fa"; + x86_64-linux = "7cc8d93f9495b516e1b33bf82af3af605f1300bcfeabdd065d448cc126bd97ab4da5ec5e95b7775ee70ab4baf899ff43671f5c6f647523fb41cda3d96f334ae5"; + aarch64-linux = "b0f0f2b4dc0a31b06cc3af541a3c44260317ca3a4414a5d50e6cf859d93821b3d2c2246baec9f96004aeb1eb0e353631283b11cf3acc134d4694f0ed71c9503d"; + x86_64-darwin = "d6842bddd9652dd7ad1d8156c3e9012f9412b3d89b4cfc0b6d644fd76744298aa5ed2cde8a80d14bb2b247ee162bae255875ee2ca62033a422dacb7adaeece2d"; + aarch64-darwin = "5cfc3c8a70f0e90f09047d3eeccd699e7210756b60fabbf1a30d6fdc121df084e5d8c3210557273739d5421f031dc9e4d07c611406734ca0671585de6e28e028"; }; }; sdk_6_0 = buildNetSdk { - version = "6.0.100-rc.2.21505.57"; + version = "6.0.100"; sha512 = { - x86_64-linux = "0a8f85a2757f61ca7f9b8c546af4554c2aac9cdb06f6d62879a60de6f2a3d37ea7136f48896c9c85828a2d55df354e7b9b5b4dc22896c927f0c6370a5ade1b9c"; - aarch64-linux = "14aa96f47f7f3520075e41753c705bdbf7f84fd7cff7cc2add1095a13e3e3c44eaaf2d822551902f05a6ad0c9acd7f7424190b7c09c397004c632eddc8acd5ac"; - x86_64-darwin = "6a896f2d1e8e2d00b52641e8b1aee88888a2b30e0f18e499b1eaf4ae7dbdaa24ea5af0dbd4a6a1cee715738e6e91cecdbc02c2c7d3d4c71d4c9af3e04f1b4fc9"; - aarch64-darwin = "c96c8a86e36ca16a0e10f635250472d5c8eda290dc505ed8eb4bd6a68b8e6ae6b2770236f5bda1573bc3124229531b3ed7dd71f60a821e39aaaa6697a82fdf8a"; + x86_64-linux = "cb0d174a79d6294c302261b645dba6a479da8f7cf6c1fe15ae6998bc09c5e0baec810822f9e0104e84b0efd51fdc0333306cb2a0a6fcdbaf515a8ad8cf1af25b"; + aarch64-linux = "e5983c1c599d6dc7c3c7496b9698e47c68247f04a5d0d1e3162969d071471297bce1c2fd3a1f9fb88645006c327ae79f880dcbdd8eefc9166fd717331f2716e7"; + x86_64-darwin = "6e2f502a84f712d60daed31c4076c5b55ee98a03259adf4bdc01659afcac2be7050e5a404dcda35fdc598bf5cd766772c08abc483ed94f6985c9501057b0186a"; + aarch64-darwin = "92ead34c7e082dbed2786db044385ddfc68673e096a3edf64bc0bf70c76ea1c5cb816cde99aab2d8c528a44c86593b812877d075486dd0ae565f0e01e9eaa562"; }; }; } diff --git a/pkgs/development/compilers/elm/default.nix b/pkgs/development/compilers/elm/default.nix index 837855d2bddc..b82f14d9ef9f 100644 --- a/pkgs/development/compilers/elm/default.nix +++ b/pkgs/development/compilers/elm/default.nix @@ -8,9 +8,9 @@ let fetchElmDeps = import ./fetchElmDeps.nix { inherit stdenv lib fetchurl; }; hsPkgs = haskellPackages.override { - overrides = self: super: with haskell.lib; with lib; + overrides = self: super: with haskell.lib.compose; with lib; let elmPkgs = rec { - elm = overrideCabal (self.callPackage ./packages/elm.nix { }) (drv: { + elm = overrideCabal (drv: { # sadly with parallelism most of the time breaks compilation enableParallelBuilding = false; preConfigure = self.fetchElmDeps { @@ -29,22 +29,22 @@ let homepage = "https://elm-lang.org/"; license = licenses.bsd3; maintainers = with maintainers; [ domenkozar turbomack ]; - }); + }) (self.callPackage ./packages/elm.nix { }); /* The elm-format expression is updated via a script in the https://github.com/avh4/elm-format repo: `package/nix/build.sh` */ - elm-format = justStaticExecutables (overrideCabal (self.callPackage ./packages/elm-format.nix {}) (drv: { + elm-format = justStaticExecutables (overrideCabal (drv: { jailbreak = true; description = "Formats Elm source code according to a standard set of rules based on the official Elm Style Guide"; homepage = "https://github.com/avh4/elm-format"; license = licenses.bsd3; maintainers = with maintainers; [ avh4 turbomack ]; - })); + }) (self.callPackage ./packages/elm-format.nix {})); - elmi-to-json = justStaticExecutables (overrideCabal (self.callPackage ./packages/elmi-to-json.nix {}) (drv: { + elmi-to-json = justStaticExecutables (overrideCabal (drv: { prePatch = '' substituteInPlace package.yaml --replace "- -Werror" "" hpack @@ -55,9 +55,9 @@ let homepage = "https://github.com/stoeffel/elmi-to-json"; license = licenses.bsd3; maintainers = [ maintainers.turbomack ]; - })); + }) (self.callPackage ./packages/elmi-to-json.nix {})); - elm-instrument = justStaticExecutables (overrideCabal (self.callPackage ./packages/elm-instrument.nix {}) (drv: { + elm-instrument = justStaticExecutables (overrideCabal (drv: { prePatch = '' sed "s/desc <-.*/let desc = \"${drv.version}\"/g" Setup.hs --in-place ''; @@ -69,7 +69,7 @@ let homepage = "https://github.com/zwilias/elm-instrument"; license = licenses.bsd3; maintainers = [ maintainers.turbomack ]; - })); + }) (self.callPackage ./packages/elm-instrument.nix {})); inherit fetchElmDeps; elmVersion = elmPkgs.elm.version; diff --git a/pkgs/development/compilers/eql/default.nix b/pkgs/development/compilers/eql/default.nix index a3fefbc1f480..e0ef27ce2372 100644 --- a/pkgs/development/compilers/eql/default.nix +++ b/pkgs/development/compilers/eql/default.nix @@ -1,8 +1,8 @@ { lib, stdenv, fetchgit, qt4, ecl, xorgserver, xkbcomp, xkeyboard_config }: stdenv.mkDerivation rec { - version = src.rev; - pname = "eql-git"; + version = "unstable-2012-12-10"; + pname = "eql"; src = fetchgit { rev = "9097bf98446ee33c07bb155d800395775ce0d9b2"; url = "https://gitlab.com/eql/eql.git"; diff --git a/pkgs/development/compilers/gcc-arm-embedded/10/default.nix b/pkgs/development/compilers/gcc-arm-embedded/10/default.nix index edb9b1ba7167..53c9ac806e78 100644 --- a/pkgs/development/compilers/gcc-arm-embedded/10/default.nix +++ b/pkgs/development/compilers/gcc-arm-embedded/10/default.nix @@ -8,20 +8,22 @@ stdenv.mkDerivation rec { pname = "gcc-arm-embedded"; version = "10.3.1"; - release = "10.3-2021.07"; + release = "10.3-2021.10"; suffix = { + aarch64-darwin = "mac"; # use intel binaries via rosetta aarch64-linux = "aarch64-linux"; - x86_64-darwin = "mac-10.14.6"; + x86_64-darwin = "mac"; x86_64-linux = "x86_64-linux"; }.${stdenv.hostPlatform.system} or (throw "Unsupported system: ${stdenv.hostPlatform.system}"); src = fetchurl { url = "https://developer.arm.com/-/media/Files/downloads/gnu-rm/${release}/gcc-arm-none-eabi-${release}-${suffix}.tar.bz2"; sha256 = { - aarch64-linux = "0y4nyrff5bq90v44z2h90gqgl18bs861i9lygx4z89ym85jycx9s"; - x86_64-darwin = "1r3yidmgx1xq1f19y2c5njf2g95vs9cssmmsxsb68qm192r58i8a"; - x86_64-linux = "1skcalz1sr0hhpjcl8qjsqd16n2w0zrbnlrbr8sx0g728kiqsnwc"; + aarch64-darwin = "0fr8pki2g4bfk1rk90dzwql37d0b71ngzs9zyx0g2jainan3sqgv"; + aarch64-linux = "020j8gkzc0i0b74vz98gvngnwjm5222j1gk5nswfk6587krba1gn"; + x86_64-darwin = "0fr8pki2g4bfk1rk90dzwql37d0b71ngzs9zyx0g2jainan3sqgv"; + x86_64-linux = "18y92vpl22hf74yqdvmpw8adrkl92s4crzzs6avm05md37qb9nwp"; }.${stdenv.hostPlatform.system} or (throw "Unsupported system: ${stdenv.hostPlatform.system}"); }; @@ -49,6 +51,6 @@ stdenv.mkDerivation rec { homepage = "https://developer.arm.com/open-source/gnu-toolchain/gnu-rm"; license = with licenses; [ bsd2 gpl2 gpl3 lgpl21 lgpl3 mit ]; maintainers = with maintainers; [ prusnak ]; - platforms = [ "x86_64-linux" "aarch64-linux" "x86_64-darwin" ]; + platforms = [ "x86_64-linux" "aarch64-linux" "x86_64-darwin" "aarch64-darwin" ]; }; } diff --git a/pkgs/development/compilers/gcc-arm-embedded/9/default.nix b/pkgs/development/compilers/gcc-arm-embedded/9/default.nix index c625134508e3..2254b600772d 100644 --- a/pkgs/development/compilers/gcc-arm-embedded/9/default.nix +++ b/pkgs/development/compilers/gcc-arm-embedded/9/default.nix @@ -12,6 +12,7 @@ stdenv.mkDerivation rec { subdir = "9-2020q2"; suffix = { + aarch64-darwin = "mac"; # use intel binaries via rosetta aarch64-linux = "aarch64-linux"; x86_64-darwin = "mac"; x86_64-linux = "x86_64-linux"; @@ -20,6 +21,7 @@ stdenv.mkDerivation rec { src = fetchurl { url = "https://developer.arm.com/-/media/Files/downloads/gnu-rm/${subdir}/gcc-arm-none-eabi-${release}-${suffix}.tar.bz2"; sha256 = { + aarch64-darwin = "1ils9z16wrvglh72m428y5irmd36biq79yj86756whib8izbifdv"; aarch64-linux = "1b5q2y710hy7lddj8vj3zl54gfl74j30kx3hk3i81zrcbv16ah8z"; x86_64-darwin = "1ils9z16wrvglh72m428y5irmd36biq79yj86756whib8izbifdv"; x86_64-linux = "07zi2yr5gvhpbij5pnj49zswb9g2gw7zqp4xwwniqmq477h2xp2s"; @@ -50,6 +52,6 @@ stdenv.mkDerivation rec { homepage = "https://developer.arm.com/open-source/gnu-toolchain/gnu-rm"; license = with licenses; [ bsd2 gpl2 gpl3 lgpl21 lgpl3 mit ]; maintainers = with maintainers; [ prusnak ]; - platforms = [ "x86_64-linux" "aarch64-linux" "x86_64-darwin" ]; + platforms = [ "x86_64-linux" "aarch64-linux" "x86_64-darwin" "aarch64-darwin" ]; }; } diff --git a/pkgs/development/compilers/ghc/9.2.1.nix b/pkgs/development/compilers/ghc/9.2.1.nix index 703ba0a705c2..90dea665e6d6 100644 --- a/pkgs/development/compilers/ghc/9.2.1.nix +++ b/pkgs/development/compilers/ghc/9.2.1.nix @@ -142,24 +142,14 @@ let in stdenv.mkDerivation (rec { - version = "9.2.0.20210821"; + version = "9.2.1"; pname = "${targetPrefix}ghc${variantSuffix}"; src = fetchurl { - url = "https://downloads.haskell.org/ghc/9.2.1-rc1/ghc-${version}-src.tar.xz"; - sha256 = "1q2pppxv2avhykyxvyq72r5p97rkkiqp19b77yhp85ralbcp4ivw"; + url = "https://downloads.haskell.org/ghc/${version}/ghc-${version}-src.tar.xz"; + sha256 = "f444012f97a136d9940f77cdff03fda48f9475e2ed0fec966c4d35c4df55f746"; }; - patches = [ - # picked from release branch, remove with the next release candidate, - # see https://gitlab.haskell.org/ghc/ghc/-/issues/19950#note_373726 - (fetchpatch { - name = "fix-darwin-link-failure.patch"; - url = "https://gitlab.haskell.org/ghc/ghc/-/commit/77456387025ca74299ecc70621cbdb62b1b6ffc9.patch"; - sha256 = "1g8smrn7hj8cbp9fhrylvmrb15s0xd8lhdgxqnx0asnd4az82gj8"; - }) - ]; - enableParallelBuilding = true; outputs = [ "out" "doc" ]; @@ -255,7 +245,7 @@ stdenv.mkDerivation (rec { ] ++ lib.optionals enableDocs [ sphinx ] ++ lib.optionals stdenv.isDarwin [ - # TODO(@sternenseemann): use XATTR env var after backport of + # TODO(@sternenseemann): backport addition of XATTR env var like # https://gitlab.haskell.org/ghc/ghc/-/merge_requests/6447 xattr ]; diff --git a/pkgs/development/compilers/ghcjs/8.10/default.nix b/pkgs/development/compilers/ghcjs/8.10/default.nix index f8e7c31353f7..6b8a251197d8 100644 --- a/pkgs/development/compilers/ghcjs/8.10/default.nix +++ b/pkgs/development/compilers/ghcjs/8.10/default.nix @@ -3,7 +3,7 @@ , callPackage , fetchgit , ghcjsSrcJson ? null -, ghcjsSrc ? fetchgit (builtins.fromJSON (builtins.readFile ghcjsSrcJson)) +, ghcjsSrc ? fetchgit lib.importJSON ghcjsSrcJson , bootPkgs , stage0 , haskellLib diff --git a/pkgs/development/compilers/ghcjs/patches/vector-ghcjs-storable-set.patch b/pkgs/development/compilers/ghcjs/patches/vector-ghcjs-storable-set.patch deleted file mode 100644 index 20e19d8bf863..000000000000 --- a/pkgs/development/compilers/ghcjs/patches/vector-ghcjs-storable-set.patch +++ /dev/null @@ -1,14 +0,0 @@ -diff --git a/Data/Vector/Storable/Mutable.hs b/Data/Vector/Storable/Mutable.hs -index 8b538bc..2b74fce 100644 ---- a/Data/Vector/Storable/Mutable.hs -+++ b/Data/Vector/Storable/Mutable.hs -@@ -197,7 +197,9 @@ storableSet (MVector n fp) x - 1 -> storableSetAsPrim n fp x (undefined :: Word8) - 2 -> storableSetAsPrim n fp x (undefined :: Word16) - 4 -> storableSetAsPrim n fp x (undefined :: Word32) -+#if !defined(ghcjs_HOST_OS) - 8 -> storableSetAsPrim n fp x (undefined :: Word64) -+#endif - _ -> unsafeWithForeignPtr fp $ \p -> do - poke p x - diff --git a/pkgs/development/compilers/gnatboot/default.nix b/pkgs/development/compilers/gnatboot/default.nix index c68c4fd4ba03..a23398d2e19d 100644 --- a/pkgs/development/compilers/gnatboot/default.nix +++ b/pkgs/development/compilers/gnatboot/default.nix @@ -10,12 +10,12 @@ stdenv.mkDerivation { src = if stdenv.hostPlatform.system == "i686-linux" then fetchurl { - url = mirror://gentoo/distfiles/gnatboot-4.1-i386.tar.bz2; + url = "mirror://gentoo/distfiles/gnatboot-4.1-i386.tar.bz2"; sha256 = "0665zk71598204bf521vw68i5y6ccqarq9fcxsqp7ccgycb4lysr"; } else if stdenv.hostPlatform.system == "x86_64-linux" then fetchurl { - url = mirror://gentoo/distfiles/gnatboot-4.1-amd64.tar.bz2; + url = "mirror://gentoo/distfiles/gnatboot-4.1-amd64.tar.bz2"; sha256 = "1li4d52lmbnfs6llcshlbqyik2q2q4bvpir0f7n38nagp0h6j0d4"; } else diff --git a/pkgs/development/compilers/go/1.17.nix b/pkgs/development/compilers/go/1.17.nix index 279be309427a..62b435c4615b 100644 --- a/pkgs/development/compilers/go/1.17.nix +++ b/pkgs/development/compilers/go/1.17.nix @@ -50,11 +50,11 @@ in stdenv.mkDerivation rec { pname = "go"; - version = "1.17.2"; + version = "1.17.3"; src = fetchurl { url = "https://dl.google.com/go/go${version}.src.tar.gz"; - sha256 = "sha256-IlXrPk6CTdfV/Nwuf4RTQ3HBhjEuVG+xCGo0wXdS9DE="; + sha256 = "sha256-cFxkJR5bJdXVXt4QOcaqIr6kCnqTHRTDcDOYU2Q8PfA="; }; # perl is used for testing go vet @@ -273,7 +273,5 @@ stdenv.mkDerivation rec { license = licenses.bsd3; maintainers = teams.golang.members; platforms = platforms.linux ++ platforms.darwin; - # requires >=10.13 stdenv on x86_64-darwin - badPlatforms = [ "x86_64-darwin" ]; }; } diff --git a/pkgs/development/compilers/kotlin/native.nix b/pkgs/development/compilers/kotlin/native.nix index 13c7143461d6..34f38b3a8e9e 100644 --- a/pkgs/development/compilers/kotlin/native.nix +++ b/pkgs/development/compilers/kotlin/native.nix @@ -39,6 +39,7 @@ stdenv.mkDerivation rec { runHook preInstall mkdir -p $out + rm bin/kotlinc mv * $out runHook postInstall @@ -58,7 +59,7 @@ stdenv.mkDerivation rec { standard library. ''; license = lib.licenses.asl20; - maintainers = with lib.maintainers; [ ]; + maintainers = with lib.maintainers; [ fabianhjr ]; platforms = [ "x86_64-linux" ] ++ lib.platforms.darwin; }; } diff --git a/pkgs/development/compilers/ldc/binary.nix b/pkgs/development/compilers/ldc/binary.nix index 7b43a2c2e8d8..05928d396c86 100644 --- a/pkgs/development/compilers/ldc/binary.nix +++ b/pkgs/development/compilers/ldc/binary.nix @@ -3,8 +3,8 @@ let inherit (stdenv) hostPlatform; - OS = if stdenv.hostPlatform.isDarwin then "osx" else hostPlatform.parsed.kernel.name; - ARCH = toString hostPlatform.parsed.cpu.name; + OS = if hostPlatform.isDarwin then "osx" else hostPlatform.parsed.kernel.name; + ARCH = if hostPlatform.isDarwin && hostPlatform.isAarch64 then "arm64" else hostPlatform.parsed.cpu.name; in stdenv.mkDerivation { pname = "ldc-bootstrap"; inherit version; @@ -37,6 +37,6 @@ in stdenv.mkDerivation { # from https://github.com/ldc-developers/ldc/blob/master/LICENSE license = with licenses; [ bsd3 boost mit ncsa gpl2Plus ]; maintainers = with maintainers; [ ThomasMader lionello ]; - platforms = [ "x86_64-linux" "x86_64-darwin" "aarch64-linux" ]; + platforms = [ "x86_64-linux" "x86_64-darwin" "aarch64-linux" "aarch64-darwin" ]; }; } diff --git a/pkgs/development/compilers/ldc/bootstrap.nix b/pkgs/development/compilers/ldc/bootstrap.nix index fde4c8426848..18c656b27f2f 100644 --- a/pkgs/development/compilers/ldc/bootstrap.nix +++ b/pkgs/development/compilers/ldc/bootstrap.nix @@ -1,10 +1,11 @@ { callPackage }: callPackage ./binary.nix { - version = "1.19.0"; + version = "1.25.0"; hashes = { # Get these from `nix-prefetch-url https://github.com/ldc-developers/ldc/releases/download/v1.19.0/ldc2-1.19.0-osx-x86_64.tar.xz` etc.. - osx-x86_64 = "1bp3xkh9zp64dzq8isanib1gacb3nfbl70qv15qygwk1zan6zgy7"; - linux-x86_64 = "146grr2lwarfk13wgkpyb77xb6b3as1is2rf4s2hipqjmc8biy1h"; - linux-aarch64 = "1fv6jshfvi15m7masgxq1hgp216qjd5amizrqdf26vhrq3a08li3"; + osx-x86_64 = "1xaqxf1lz8kdb0n5iycfpxpvabf1zy0akg14kg554sm85xnsf8pa"; + linux-x86_64 = "1shzdq564jg3ga1hwrvpx30lpszc6pqndqndr5mqmc352znkiy5i"; + linux-aarch64 = "04i4xxwhq02d98r3qrrnv5dbd4xr4d7ph3zv94z2m58z3vgphdjh"; + osx-arm64 = "0b0cpgzn23clggx0cvdaja29q7w7ihkmjbnf1md03h9h5nzp9z1v"; }; } diff --git a/pkgs/development/compilers/ldc/generic.nix b/pkgs/development/compilers/ldc/generic.nix index f79fb24a56b4..93ee83cb0abe 100644 --- a/pkgs/development/compilers/ldc/generic.nix +++ b/pkgs/development/compilers/ldc/generic.nix @@ -132,6 +132,6 @@ stdenv.mkDerivation rec { # from https://github.com/ldc-developers/ldc/blob/master/LICENSE license = with licenses; [ bsd3 boost mit ncsa gpl2Plus ]; maintainers = with maintainers; [ ThomasMader lionello ]; - platforms = [ "x86_64-linux" "i686-linux" "x86_64-darwin" ]; + platforms = [ "x86_64-linux" "i686-linux" "x86_64-darwin" "aarch64-darwin" ]; }; } diff --git a/pkgs/development/compilers/lingua-franca/default.nix b/pkgs/development/compilers/lingua-franca/default.nix new file mode 100644 index 000000000000..b843fd5e850f --- /dev/null +++ b/pkgs/development/compilers/lingua-franca/default.nix @@ -0,0 +1,41 @@ +{ lib, pkgs, stdenv, fetchFromGitHub, jdk11_headless }: + +stdenv.mkDerivation { + pname = "lfc"; + version = "0.1.0"; + + src = fetchFromGitHub { + owner = "revol-xut"; + repo = "lingua-franca-nix-releases"; + rev = "11c6d5297cd63bf0b365a68c5ca31ec80083bd05"; + sha256 = "DgxunzC8Ep0WdwChDHWgG5QJbJZ8UgQRXtP1HZqL9Jg="; + }; + + buildInputs = [ jdk11_headless ]; + + _JAVA_HOME = "${jdk11_headless}/"; + + postPatch = '' + substituteInPlace bin/lfc \ + --replace 'base=`dirname $(dirname ''${abs_path})`' "base='$out'" \ + --replace "run_lfc_with_args" "${jdk11_headless}/bin/java -jar $out/lib/jars/org.lflang.lfc-0.1.0-SNAPSHOT-all.jar" + ''; + + installPhase = '' + cp -r ./ $out/ + chmod +x $out/bin/lfc + ''; + + meta = with lib; { + description = "Polyglot coordination language"; + longDescription = '' + Lingua Franca (LF) is a polyglot coordination language for concurrent + and possibly time-sensitive applications ranging from low-level + embedded code to distributed cloud and edge applications. + ''; + homepage = "https://github.com/lf-lang/lingua-franca"; + license = licenses.bsd2; + platforms = platforms.linux; + maintainers = with maintainers; [ revol-xut ]; + }; +} diff --git a/pkgs/development/compilers/llvm/rocm/llvm/default.nix b/pkgs/development/compilers/llvm/rocm/llvm/default.nix index 129cc69bf6dc..06dfd1870b07 100644 --- a/pkgs/development/compilers/llvm/rocm/llvm/default.nix +++ b/pkgs/development/compilers/llvm/rocm/llvm/default.nix @@ -74,7 +74,7 @@ in stdenv.mkDerivation rec { ''; preCheck = '' - export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$PWD/lib + export LD_LIBRARY_PATH=$LD_LIBRARY_PATH''${LD_LIBRARY_PATH:+:}$PWD/lib ''; postInstall = '' diff --git a/pkgs/development/compilers/ocaml/generic.nix b/pkgs/development/compilers/ocaml/generic.nix index e4cec4cf52ed..1b6a3b56e622 100644 --- a/pkgs/development/compilers/ocaml/generic.nix +++ b/pkgs/development/compilers/ocaml/generic.nix @@ -76,7 +76,7 @@ stdenv.mkDerivation (args // { preConfigure = optionalString (!lib.versionAtLeast version "4.04") '' CAT=$(type -tp cat) sed -e "s@/bin/cat@$CAT@" -i config/auto-aux/sharpbang - '' + optionalString (stdenv.isDarwin && stdenv.isAarch64) '' + '' + optionalString (stdenv.isDarwin && !lib.versionAtLeast version "4.13") '' # Do what upstream does by default now: https://github.com/ocaml/ocaml/pull/10176 # This is required for aarch64-darwin, everything else works as is. AS="${stdenv.cc}/bin/cc -c" ASPP="${stdenv.cc}/bin/cc -c" diff --git a/pkgs/development/compilers/pakcs/default.nix b/pkgs/development/compilers/pakcs/default.nix index e2dceaab3975..a08a1b245dbd 100644 --- a/pkgs/development/compilers/pakcs/default.nix +++ b/pkgs/development/compilers/pakcs/default.nix @@ -16,14 +16,14 @@ let curry-frontend = (haskellPackages.override { overrides = self: super: { - curry-base = haskell.lib.overrideCabal (super.callPackage ./curry-base.nix {}) (drv: { + curry-base = haskell.lib.compose.overrideCabal (drv: { inherit src; postUnpack = "sourceRoot+=/frontend/curry-base"; - }); - curry-frontend = haskell.lib.overrideCabal (super.callPackage ./curry-frontend.nix {}) (drv: { + }) (super.callPackage ./curry-base.nix {}); + curry-frontend = haskell.lib.compose.overrideCabal (drv: { inherit src; postUnpack = "sourceRoot+=/frontend/curry-frontend"; - }); + }) (super.callPackage ./curry-frontend.nix {}); }; }).curry-frontend; in stdenv.mkDerivation { diff --git a/pkgs/development/compilers/rust/default.nix b/pkgs/development/compilers/rust/default.nix index 59420477119c..6dfc8a49063f 100644 --- a/pkgs/development/compilers/rust/default.nix +++ b/pkgs/development/compilers/rust/default.nix @@ -18,39 +18,17 @@ , CoreFoundation, Security, SystemConfiguration , pkgsBuildTarget, pkgsBuildBuild , makeRustPlatform -}: rec { - # https://doc.rust-lang.org/reference/conditional-compilation.html#target_arch - toTargetArch = platform: - if platform.isAarch32 then "arm" - else platform.parsed.cpu.name; +}: - # https://doc.rust-lang.org/reference/conditional-compilation.html#target_os - toTargetOs = platform: - if platform.isDarwin then "macos" - else platform.parsed.kernel.name; +let + # Use `import` to make sure no packages sneak in here. + lib' = import ../../../build-support/rust/lib { inherit lib; }; +in +{ + lib = lib'; - # Returns the name of the rust target, even if it is custom. Adjustments are - # because rust has slightly different naming conventions than we do. - toRustTarget = platform: with platform.parsed; let - cpu_ = platform.rustc.platform.arch or { - "armv7a" = "armv7"; - "armv7l" = "armv7"; - "armv6l" = "arm"; - "armv5tel" = "armv5te"; - "riscv64" = "riscv64gc"; - }.${cpu.name} or cpu.name; - vendor_ = platform.rustc.platform.vendor or { - "w64" = "pc"; - }.${vendor.name} or vendor.name; - in platform.rustc.config - or "${cpu_}-${vendor_}-${kernel.name}${lib.optionalString (abi.name != "unknown") "-${abi.name}"}"; - - # Returns the name of the rust target if it is standard, or the json file - # containing the custom target spec. - toRustTargetSpec = platform: - if (platform.rustc or {}) ? platform - then builtins.toFile (toRustTarget platform + ".json") (builtins.toJSON platform.rustc.platform) - else toRustTarget platform; + # Backwards compat before `lib` was factored out. + inherit (lib') toTargetArch toTargetOs toRustTarget toRustTargetSpec; # This just contains tools for now. But it would conceivably contain # libraries too, say if we picked some default/recommended versions from diff --git a/pkgs/development/compilers/rust/make-rust-platform.nix b/pkgs/development/compilers/rust/make-rust-platform.nix index 33d826eef507..f479b052019e 100644 --- a/pkgs/development/compilers/rust/make-rust-platform.nix +++ b/pkgs/development/compilers/rust/make-rust-platform.nix @@ -7,12 +7,12 @@ rec { inherit rustc cargo; }; - fetchCargoTarball = buildPackages.callPackage ../../../build-support/rust/fetchCargoTarball.nix { + fetchCargoTarball = buildPackages.callPackage ../../../build-support/rust/fetch-cargo-tarball { git = buildPackages.gitMinimal; inherit cargo; }; - buildRustPackage = callPackage ../../../build-support/rust { + buildRustPackage = callPackage ../../../build-support/rust/build-rust-package { git = buildPackages.gitMinimal; inherit stdenv cargoBuildHook cargoCheckHook cargoInstallHook cargoSetupHook fetchCargoTarball importCargoLock rustc; diff --git a/pkgs/development/compilers/yosys/default.nix b/pkgs/development/compilers/yosys/default.nix index f2624d124185..56e0dc3b57d6 100644 --- a/pkgs/development/compilers/yosys/default.nix +++ b/pkgs/development/compilers/yosys/default.nix @@ -51,6 +51,7 @@ stdenv.mkDerivation rec { patches = [ ./plugin-search-dirs.patch + ./fix-clang-build.patch # see https://github.com/YosysHQ/yosys/issues/2011 ]; postPatch = '' @@ -104,12 +105,5 @@ stdenv.mkDerivation rec { license = licenses.isc; platforms = platforms.all; maintainers = with maintainers; [ shell thoughtpolice emily ]; - #In file included from kernel/driver.cc:20: - #./kernel/yosys.h:42:10: fatal error: 'map' file not found - ##include <map> - - #https://github.com/YosysHQ/yosys/issues/681 - #https://github.com/YosysHQ/yosys/issues/2011 - broken = stdenv.isDarwin; }; } diff --git a/pkgs/development/compilers/yosys/fix-clang-build.patch b/pkgs/development/compilers/yosys/fix-clang-build.patch new file mode 100644 index 000000000000..f44d60d7e6ec --- /dev/null +++ b/pkgs/development/compilers/yosys/fix-clang-build.patch @@ -0,0 +1,13 @@ +diff --git a/Makefile b/Makefile +index 86abc6958..a72f7b792 100644 +--- a/Makefile ++++ b/Makefile +@@ -187,7 +192,7 @@ endif + endif + + ifeq ($(CONFIG),clang) +-CXX = clang ++CXX = clang++ + LD = clang++ + CXXFLAGS += -std=$(CXXSTD) -Os + ABCMKARGS += ARCHFLAGS="-DABC_USE_STDINT_H" diff --git a/pkgs/development/coq-modules/coqeal/default.nix b/pkgs/development/coq-modules/coqeal/default.nix index e9ce81c30a9d..3921104cb54b 100644 --- a/pkgs/development/coq-modules/coqeal/default.nix +++ b/pkgs/development/coq-modules/coqeal/default.nix @@ -10,12 +10,13 @@ with lib; inherit version; defaultVersion = with versions; switch [ coq.version mathcomp.version ] [ - { cases = [ (isGe "8.10") (isGe "1.12.0") ]; out = "1.0.6"; } + { cases = [ (isGe "8.10") (isGe "1.12.0") ]; out = "1.1.0"; } { cases = [ (isGe "8.10") (range "1.11.0" "1.12.0") ]; out = "1.0.5"; } { cases = [ (isGe "8.7") "1.11.0" ]; out = "1.0.4"; } { cases = [ (isGe "8.7") "1.10.0" ]; out = "1.0.3"; } ] null; + release."1.1.0".sha256 = "1vyhfna5frkkq2fl1fkg2mwzpg09k3sbzxxpyp14fjay81xajrxr"; release."1.0.6".sha256 = "0lqkyfj4qbq8wr3yk8qgn7mclw582n3fjl9l19yp8cnchspzywx0"; release."1.0.5".sha256 = "0cmvky8glb5z2dy3q62aln6qbav4lrf2q1589f6h1gn5bgjrbzkm"; release."1.0.4".sha256 = "1g5m26lr2lwxh6ld2gykailhay4d0ayql4bfh0aiwqpmmczmxipk"; diff --git a/pkgs/development/coq-modules/graph-theory/default.nix b/pkgs/development/coq-modules/graph-theory/default.nix index 1ecda185cdd8..5607d342a2eb 100644 --- a/pkgs/development/coq-modules/graph-theory/default.nix +++ b/pkgs/development/coq-modules/graph-theory/default.nix @@ -12,7 +12,7 @@ mkCoqDerivation { inherit version; defaultVersion = with versions; switch coq.coq-version [ - { case = isEq "8.13"; out = "0.9"; } + { case = isGe "8.13"; out = "0.9"; } ] null; propagatedBuildInputs = [ mathcomp-algebra mathcomp-finmap hierarchy-builder ]; diff --git a/pkgs/development/coq-modules/serapi/default.nix b/pkgs/development/coq-modules/serapi/default.nix index 01954dff6554..f70cdcc9322a 100644 --- a/pkgs/development/coq-modules/serapi/default.nix +++ b/pkgs/development/coq-modules/serapi/default.nix @@ -57,7 +57,7 @@ in ''; meta = with lib; { - homepage = https://github.com/ejgallego/coq-serapi; + homepage = "https://github.com/ejgallego/coq-serapi"; description = "SerAPI is a library for machine-to-machine interaction with the Coq proof assistant"; license = licenses.lgpl21Plus; maintainers = [ maintainers.Zimmi48 ]; diff --git a/pkgs/development/dhall-modules/dhall-grafana.nix b/pkgs/development/dhall-modules/dhall-grafana.nix new file mode 100644 index 000000000000..f06a994a9a4c --- /dev/null +++ b/pkgs/development/dhall-modules/dhall-grafana.nix @@ -0,0 +1,11 @@ +{ dhallPackages, buildDhallGitHubPackage }: + +buildDhallGitHubPackage { + name = "grafana"; + owner = "weeezes"; + repo = "dhall-grafana"; + # 2021-11-12 + rev = "d5630dc55deacf5100a99802a4df1d9680b263b3"; + sha256 = "01320hpqgr5r4grsydmdl9yznmly1ssnlc9gcwa8rj1ah0a8xlgz"; + dependencies = [ dhallPackages.Prelude ]; +} diff --git a/pkgs/development/embedded/arduino/arduino-core/default.nix b/pkgs/development/embedded/arduino/arduino-core/default.nix index 529be6e2a56e..a0184eb94e58 100644 --- a/pkgs/development/embedded/arduino/arduino-core/default.nix +++ b/pkgs/development/embedded/arduino/arduino-core/default.nix @@ -80,24 +80,24 @@ let + lib.optionalString (!withGui) "-core"; in stdenv.mkDerivation rec { - version = "1.8.13"; + version = "1.8.16"; name = "${flavor}-${version}"; src = fetchFromGitHub { owner = "arduino"; repo = "Arduino"; rev = version; - sha256 = "0qg3qyj1b7wbaw2rsfly7nf3115h26nskl4ggrn6plhx272ni84p"; + sha256 = "sha256-6d+y0Lgr+h0qYpCsa/ihvSMNuAdRMNQRuxZFpkWLDvg="; }; - teensyduino_version = "153"; + teensyduino_version = "155"; teensyduino_src = fetchurl { url = "https://www.pjrc.com/teensy/td_${teensyduino_version}/TeensyduinoInstall.${teensy_architecture}"; sha256 = { - linux64 = "02qgsj4h4zrjxkcclx7clsqbqd699kg0dq1xxa9hbj3vfnddjv1f"; - linux32 = "14xaff8xj176ih8ifdvxsly5xgjjm82dqbn7lqq81a43i0svjjyn"; - linuxarm = "0xpg9axa6dqyhccm9cpvsv2al7rgwy4gv2l8b2kffvn974dl5759"; - linuxaarch64 = "1lyn4zy4l5mml3c19fw6i2pk1ypnq6mgjmxmzk9d54wpf6n3j5dk"; + linux64 = "sha256-DypCbCm4RKYgnFJRwoHyPht6dFG48YvWM4RzEDdJE6U="; + linux32 = "sha256-MJ4xsTAZPO8BhO/VWSjBAjBVLrKM+3PNi1fiF8dsuVQ="; + linuxarm = "sha256-x5JdYflLThohos9RTAWt4XrzvksB7VWfXTKqgXZ1d6Q="; + linuxaarch64 = "sha256-N18nvavEMhvt2jOrdI+tsXtbWIdsj1n4aMVeaaBlcT4="; }.${teensy_architecture} or (throw "No arduino binaries for ${teensy_architecture}"); }; # Used because teensyduino requires jars be a specific size @@ -105,14 +105,13 @@ stdenv.mkDerivation rec { url = "https://downloads.arduino.cc/arduino-${version}-${teensy_architecture}.tar.xz"; sha256 = { - linux64 = "1bdlk51dqiyg5pw23hs8rfv8nrjqy0jqfl89h1466ahahpnd080v"; - linux32 = "0mgsw9wpwv1pgs2jslzflh7zf4ggqjgcd55hmdzrj0dvgkyw4cr2"; - linuxarm = "08n4lpak3i7yfyi0085j4nq14gb2n7zx85wl9drp8gaavxnfbp5f"; - linuxaarch64 = "0m4nhykzknm2hdpz1fhr2hbpncry53kvzs9y5lgj7rx3sy6ygbh7"; + linux64 = "sha256-VK+Skl2xjqPWYEEKt1CCLwBZRxoyRfYQ3/60Byen9po="; + linux32 = "sha256-fjqV4avddmWAdFqMuUNUcDguxv3SI45m5QHFiWP8EKE="; + linuxarm = "sha256-Br8vUN7njI7VCH+ZvUh44l8LcgW+61+Q0x2AiXxIhTM="; + linuxaarch64 = "sha256-bOizBUUuyINg0/EqEatBq9lECT97JXxKbesCGyCA3YQ="; }.${teensy_architecture} or (throw "No arduino binaries for ${teensy_architecture}"); }; - # the glib setup hook will populate GSETTINGS_SCHEMAS_PATH, # wrapGAppHooks (among other things) adds it to XDG_DATA_DIRS # so 'save as...' works: diff --git a/pkgs/development/embedded/arduino/arduino-core/downloads.nix b/pkgs/development/embedded/arduino/arduino-core/downloads.nix index 76fa7664f0e0..14ce93d2c50a 100644 --- a/pkgs/development/embedded/arduino/arduino-core/downloads.nix +++ b/pkgs/development/embedded/arduino/arduino-core/downloads.nix @@ -83,17 +83,17 @@ url = "https://github.com/arduino-libraries/SD/archive/1.2.4.zip"; sha256 = "123g9px9nqcrsx696wqwzjd5s4hr55nxgfz95b7ws3v007i1f3fz"; }; - "build/Servo-1.1.6.zip" = fetchurl { - url = "https://github.com/arduino-libraries/Servo/archive/1.1.6.zip"; - sha256 = "1z9k9lxzj5d3f8h9hy86f4k5wgfr2a9zcvjh76qmpvv6clcv3js3"; + "build/Servo-1.1.8.zip" = fetchurl { + url = "https://github.com/arduino-libraries/Servo/archive/1.1.8.zip"; + sha256 = "sha256-8mfRQG/HIRVvdiRApjMib6n1ENqAB63vGsxe6vwndeU="; }; "build/LiquidCrystal-1.0.7.zip" = fetchurl { url = "https://github.com/arduino-libraries/LiquidCrystal/archive/1.0.7.zip"; sha256 = "1wrxrqz3n4yrj9j1a2b7pdd7a1rlyi974ra7crv5amjng8817x9n"; }; - "build/Adafruit_Circuit_Playground-1.10.4.zip" = fetchurl { - url = "https://github.com/adafruit/Adafruit_CircuitPlayground/archive/1.10.4.zip"; - sha256 = "194az5pxxzs0wg4ng7w0zqrdw93qdyv02y0q2yy57dr4kwfrm6nl"; + "build/Adafruit_Circuit_Playground-1.11.3.zip" = fetchurl { + url = "https://github.com/adafruit/Adafruit_CircuitPlayground/archive/1.11.3.zip"; + sha256 = "sha256-YL4ZAi9Fno+rG/bAdjxnXIglfZnbN6KpXFpj23Bf3LQ="; }; "build/libastylej-2.05.1-5.zip" = fetchurl { url = "https://downloads.arduino.cc/libastylej-2.05.1-5.zip"; @@ -103,20 +103,24 @@ url = "https://downloads.arduino.cc/liblistSerials/liblistSerials-1.4.2-2.zip"; sha256 = "0sqzwp1lfjy452z3d4ma5c4blwsj7za72ymxf7crpq9dh9qd8f53"; }; - "build/shared/WiFi101-Updater-ArduinoIDE-Plugin-0.10.10.zip" = fetchurl { - url = "https://github.com/arduino-libraries/WiFi101-FirmwareUpdater-Plugin/releases/download/v0.10.10/WiFi101-Updater-ArduinoIDE-Plugin-0.10.10.zip"; - sha256 = "0bs5qdglsfc2q5c48m6wdjpzhz4ya4askh1g8364dp6p7jmg6w0d"; + "build/shared/WiFi101-Updater-ArduinoIDE-Plugin-0.12.0.zip" = fetchurl { + url = "https://github.com/arduino-libraries/WiFi101-FirmwareUpdater-Plugin/releases/download/v0.12.0/WiFi101-Updater-ArduinoIDE-Plugin-0.12.0.zip"; + sha256 = "sha256-6RM7Sr/tk5PVeonhzaa6WvRaz+7av+MhSYKPAinaOkg="; }; "build/avr-1.8.3.tar.bz2" = fetchurl { url = "https://downloads.arduino.cc/cores/avr-1.8.3.tar.bz2"; sha256 = "051wnc0nmsmxvvs4c79zvjag33yx5il2pz2j7qyjsxkp4jc9p2ny"; }; + "build/arduino-examples-1.9.1.zip" = fetchurl { + url = "https://github.com/arduino/arduino-examples/archive/refs/tags/1.9.1.zip"; + sha256 = "sha256-kAxIhYQ8P2ULTzQwi6bUXXEXJ53mKNgQxuwX3QYhNoQ="; + }; } // optionalAttrs (system == "x86_64-linux") { - "build/arduino-builder-linux64-1.5.4.tar.bz2" = fetchurl { - url = "https://downloads.arduino.cc/tools/arduino-builder-linux64-1.5.4.tar.bz2"; - sha256 = "1cgvwlvxzzpjaj4njz1mrsif27l26dwkz9c7gbhdj0lvlk3xsa7s"; + "build/arduino-builder-linux64-1.6.1.tar.bz2" = fetchurl { + url = "https://downloads.arduino.cc/tools/arduino-builder-linux64-1.6.1.tar.bz2"; + sha256 = "sha256-QUHuC+rE5vrMX8+Bkfuw+59UQdJAekeoaZd1Mch7UXE="; }; "build/linux/avr-gcc-7.3.0-atmel3.6.1-arduino7-x86_64-pc-linux-gnu.tar.bz2" = fetchurl { url = "https://downloads.arduino.cc/tools/avr-gcc-7.3.0-atmel3.6.1-arduino7-x86_64-pc-linux-gnu.tar.bz2"; @@ -133,9 +137,9 @@ } // optionalAttrs (system == "i686-linux") { - "build/arduino-builder-linux32-1.5.2.tar.bz2" = fetchurl { - url = "https://downloads.arduino.cc/tools/arduino-builder-linux32-1.5.2.tar.bz2"; - sha256 = "1slzw8fzxkqsp2izjisjd1rxxbqkrq6n72jc4frk5z2gdm6zfa0l"; + "build/arduino-builder-linux32-1.6.1.tar.bz2" = fetchurl { + url = "https://downloads.arduino.cc/tools/arduino-builder-linux32-1.6.1.tar.bz2"; + sha256 = "sha256-GX2oGUGYYyatLroASBCBOGjsdCws06907O+O5Rz7Kls="; }; "build/linux/avr-gcc-7.3.0-atmel3.6.1-arduino5-i686-pc-linux-gnu.tar.bz2" = fetchurl { url = "https://downloads.arduino.cc/tools/avr-gcc-7.3.0-atmel3.6.1-arduino5-i686-pc-linux-gnu.tar.bz2"; @@ -152,9 +156,9 @@ } // optionalAttrs (system == "x86_64-darwin") { - "build/arduino-builder-macosx-1.5.2-signed.tar.bz2" = fetchurl { - url = "https://downloads.arduino.cc/tools/arduino-builder-macosx-1.5.2-signed.tar.bz2"; - sha256 = "1pa795vwly1z9h1bp5qzbx2c2pq4n6p7ab5ivhmd3q89z0ywyqgz"; + "build/arduino-builder-macosx-1.6.1-signed.tar.bz2" = fetchurl { + url = "https://downloads.arduino.cc/tools/arduino-builder-macosx-1.6.1-signed.tar.bz2"; + sha256 = "sha256-icMXwovzT2UQAKry9sWyRvcNxPXaFdltAPyW/DDVEFA="; }; "build/macosx/avr-gcc-7.3.0-atmel3.6.1-arduino5-x86_64-apple-darwin14-signed.tar.bz2" = fetchurl { url = "https://downloads.arduino.cc/tools/avr-gcc-7.3.0-atmel3.6.1-arduino5-x86_64-apple-darwin14-signed.tar.bz2"; @@ -175,13 +179,13 @@ } // optionalAttrs (system == "aarch64-linux") { - "build/arduino-builder-linuxaarch64-1.5.2.tar.bz2" = fetchurl { - url = "https://downloads.arduino.cc/tools/arduino-builder-linuxaarch64-1.5.2.tar.bz2"; - sha256 = "14k7h7anjizbs2h04phw784slpfbi6hch9skvhy5ll805dmr24ci"; + "build/arduino-builder-linuxaarch64-1.6.1.tar.bz2" = fetchurl { + url = "https://downloads.arduino.cc/tools/arduino-builder-linuxaarch64-1.6.1.tar.bz2"; + sha256 = "sha256-BLcAIvGt0OQfjN87W1aLpLAQchhdFHoBqJPCcIWyHxQ="; }; - "build/linux/avr-gcc-7.3.0-atmel3.6.1-arduino5-aarch64-pc-linux-gnu.tar.bz2" = fetchurl { - url = "https://downloads.arduino.cc/tools/avr-gcc-7.3.0-atmel3.6.1-arduino5-aarch64-pc-linux-gnu.tar.bz2"; - sha256 = "040cspc41iv59fb2g9fzc6w5523dvqa1bavxni7s8w731ccp176x"; + "build/linux/avr-gcc-7.3.0-atmel3.6.1-arduino7-aarch64-pc-linux-gnu.tar.bz2" = fetchurl { + url = "https://downloads.arduino.cc/tools/avr-gcc-7.3.0-atmel3.6.1-arduino7-aarch64-pc-linux-gnu.tar.bz2"; + sha256 = "sha256-A9Miud9toXKJ6efGIzw0qFNdnGRcGe/HcroZ5WkU8zk="; }; "build/linux/avrdude-6.3.0-arduino17-aarch64-pc-linux-gnu.tar.bz2" = fetchurl { url = "https://downloads.arduino.cc/tools/avrdude-6.3.0-arduino17-aarch64-pc-linux-gnu.tar.bz2"; @@ -194,9 +198,9 @@ } // optionalAttrs (builtins.match "armv[67]l-linux" system != null) { - "build/arduino-builder-linuxarm-1.5.2.tar.bz2" = fetchurl { - url = "https://downloads.arduino.cc/tools/arduino-builder-linuxarm-1.5.2.tar.bz2"; - sha256 = "1vs2s5px07jb2sdv83qxkf9lxmsy8j4dm7bn3vpw5dcjqd3qdyww"; + "build/arduino-builder-linuxarm-1.6.1.tar.bz2" = fetchurl { + url = "https://downloads.arduino.cc/tools/arduino-builder-linuxarm-1.6.1.tar.bz2"; + sha256 = "sha256-VtJxhRaOOKdBxmTWjTYnSPAXl728hMksBKSKS49qiMU="; }; "build/linux/avr-gcc-7.3.0-atmel3.6.1-arduino5-arm-linux-gnueabihf.tar.bz2" = fetchurl { url = "https://downloads.arduino.cc/tools/avr-gcc-7.3.0-atmel3.6.1-arduino5-arm-linux-gnueabihf.tar.bz2"; diff --git a/pkgs/development/embedded/fpga/trellis/default.nix b/pkgs/development/embedded/fpga/trellis/default.nix index 8c44e34e3ed1..2289b6fb6398 100644 --- a/pkgs/development/embedded/fpga/trellis/default.nix +++ b/pkgs/development/embedded/fpga/trellis/default.nix @@ -41,6 +41,12 @@ in stdenv.mkDerivation rec { cd libtrellis ''; + postInstall = lib.optionalString stdenv.isDarwin '' + for f in $out/bin/* ; do + install_name_tool -change "$out/lib/libtrellis.dylib" "$out/lib/trellis/libtrellis.dylib" "$f" + done + ''; + doInstallCheck = true; installCheckPhase = '' diff --git a/pkgs/development/embedded/platformio/core.nix b/pkgs/development/embedded/platformio/core.nix index aa495abda555..fdd9580ed1d6 100644 --- a/pkgs/development/embedded/platformio/core.nix +++ b/pkgs/development/embedded/platformio/core.nix @@ -19,6 +19,27 @@ let }; }); + click = super.click.overridePythonAttrs (oldAttrs: rec { + version = "8.0.3"; + src = fetchFromGitHub { + owner = "pallets"; + repo = "click"; + rev = version; + sha256 = "0pxvxgfhqjgsjbgfnilqjki1l24r0rdfd98cl77i71yqdd2f497g"; + }; + }); + + starlette = super.starlette.overridePythonAttrs (oldAttrs: rec { + version = "0.17.0"; + src = fetchFromGitHub { + owner = "encode"; + repo = "starlette"; + rev = version; + sha256 = "1g76qpvqzivmwll5ir4bf45jx5kilnkadvy6b7qjisvr402i3qmw"; + }; + disabledTestPaths = []; + }); + uvicorn = super.uvicorn.overridePythonAttrs (oldAttrs: rec { version = "0.15.0"; src = fetchFromGitHub { diff --git a/pkgs/development/embedded/platformio/default.nix b/pkgs/development/embedded/platformio/default.nix index 35615a4de1f4..ab2b989696c1 100644 --- a/pkgs/development/embedded/platformio/default.nix +++ b/pkgs/development/embedded/platformio/default.nix @@ -4,14 +4,14 @@ let callPackage = newScope self; - version = "5.2.1"; + version = "5.2.3"; # pypi tarballs don't contain tests - https://github.com/platformio/platformio-core/issues/1964 src = fetchFromGitHub { owner = "platformio"; repo = "platformio-core"; rev = "v${version}"; - sha256 = "1kmwr21djcz1qnpbsk0za244rp6rkh0vp6wss1vjks4waambiqnl"; + sha256 = "0wbmwawn25srkyrd6hwrgli1himzsj08vbm76fgnpqdc84n78ckl"; }; self = { diff --git a/pkgs/development/embedded/platformio/use-local-spdx-license-list.patch b/pkgs/development/embedded/platformio/use-local-spdx-license-list.patch index 156600595f9f..e8239150f380 100644 --- a/pkgs/development/embedded/platformio/use-local-spdx-license-list.patch +++ b/pkgs/development/embedded/platformio/use-local-spdx-license-list.patch @@ -1,8 +1,8 @@ diff --git a/platformio/package/manifest/schema.py b/platformio/package/manifest/schema.py -index addc4c5..514b0ad 100644 +index 416dccfd..896c3649 100644 --- a/platformio/package/manifest/schema.py +++ b/platformio/package/manifest/schema.py -@@ -253,9 +253,4 @@ class ManifestSchema(BaseSchema): +@@ -253,9 +253,6 @@ class ManifestSchema(BaseSchema): @staticmethod @memoized(expire="1h") def load_spdx_licenses(): @@ -12,4 +12,6 @@ index addc4c5..514b0ad 100644 - "v%s/json/licenses.json" % version - ) - return json.loads(fetch_remote_content(spdx_data_url)) -+ return json.load(open("@SPDX_LICENSE_LIST_DATA@/json/licenses.json")) ++ with open("@SPDX_LICENSE_LIST_DATA@/json/licenses.json") as f: ++ spdx = json.load(f) ++ return spdx diff --git a/pkgs/development/haskell-modules/cabal2nix-unstable.nix b/pkgs/development/haskell-modules/cabal2nix-unstable.nix index b216bf9000b6..70d50088b0b3 100644 --- a/pkgs/development/haskell-modules/cabal2nix-unstable.nix +++ b/pkgs/development/haskell-modules/cabal2nix-unstable.nix @@ -8,10 +8,10 @@ }: mkDerivation { pname = "cabal2nix"; - version = "unstable-2021-09-28"; + version = "unstable-2021-10-23"; src = fetchzip { - url = "https://github.com/NixOS/cabal2nix/archive/b4d893ed1a7a66b0046dd8a48f62b81de670ab02.tar.gz"; - sha256 = "0xl5a0gfxrqz8pkx43zrj84xvcg15723lgvirxdcvc4zqa732zjg"; + url = "https://github.com/NixOS/cabal2nix/archive/8aeef87436468a416e5908b48ec82ac3f15eb885.tar.gz"; + sha256 = "1w6wabp0v2fii5i28nsp0ss6dsz222p94mmxrrns3q0df82s2cm1"; }; isLibrary = true; isExecutable = true; diff --git a/pkgs/development/haskell-modules/configuration-common.nix b/pkgs/development/haskell-modules/configuration-common.nix index f20a37fe8406..f571c2682f17 100644 --- a/pkgs/development/haskell-modules/configuration-common.nix +++ b/pkgs/development/haskell-modules/configuration-common.nix @@ -27,10 +27,10 @@ self: super: { bin-package-db = null; # waiting for release: https://github.com/jwiegley/c2hsc/issues/41 - c2hsc = appendPatch super.c2hsc (pkgs.fetchpatch { + c2hsc = appendPatch (pkgs.fetchpatch { url = "https://github.com/jwiegley/c2hsc/commit/490ecab202e0de7fc995eedf744ad3cb408b53cc.patch"; sha256 = "1c7knpvxr7p8c159jkyk6w29653z5yzgjjqj11130bbb8mk9qhq7"; - }); + }) super.c2hsc; # Some Hackage packages reference this attribute, which exists only in the # GHCJS package set. We provide a dummy version here to fix potential @@ -60,12 +60,12 @@ self: super: { # The Hackage tarball is purposefully broken, because it's not intended to be, like, useful. # https://git-annex.branchable.com/bugs/bash_completion_file_is_missing_in_the_6.20160527_tarball_on_hackage/ - git-annex = (overrideSrc super.git-annex { + git-annex = (overrideSrc { src = pkgs.fetchgit { name = "git-annex-${super.git-annex.version}-src"; url = "git://git-annex.branchable.com/"; rev = "refs/tags/" + super.git-annex.version; - sha256 = "1yn84q0iy81b2sczbf4gx8b56f9ghb9kgwjc0n7l5xn5lb2wqlqa"; + sha256 = "1dj93291kh3wm46ardacpbblisarw5pmv683pdiqcngfhlp1m91a"; # delete android and Android directories which cause issues on # darwin (case insensitive directory). Since we don't need them # during the build process, we can delete it to prevent a hash @@ -74,16 +74,16 @@ self: super: { rm -r $out/doc/?ndroid* ''; }; - }).override { + } super.git-annex).override { dbus = if pkgs.stdenv.isLinux then self.dbus else null; fdo-notify = if pkgs.stdenv.isLinux then self.fdo-notify else null; hinotify = if pkgs.stdenv.isLinux then self.hinotify else self.fsnotify; }; # Fix test trying to access /home directory - shell-conduit = overrideCabal super.shell-conduit (drv: { + shell-conduit = overrideCabal (drv: { postPatch = "sed -i s/home/tmp/ test/Spec.hs"; - }); + }) super.shell-conduit; # https://github.com/froozen/kademlia/issues/2 kademlia = dontCheck super.kademlia; @@ -99,14 +99,14 @@ self: super: { # Tests require a Kafka broker running locally haskakafka = dontCheck super.haskakafka; - bindings-levmar = overrideCabal super.bindings-levmar (drv: { + bindings-levmar = overrideCabal (drv: { extraLibraries = [ pkgs.blas ]; - }); + }) super.bindings-levmar; # Requires wrapQtAppsHook - qtah-cpp-qt5 = overrideCabal super.qtah-cpp-qt5 (drv: { + qtah-cpp-qt5 = overrideCabal (drv: { buildDepends = [ pkgs.qt5.wrapQtAppsHook ]; - }); + }) super.qtah-cpp-qt5; # The Haddock phase fails for one reason or another. deepseq-magic = dontHaddock super.deepseq-magic; @@ -119,15 +119,15 @@ self: super: { # sse2 flag due to https://github.com/haskell/vector/issues/47. # Jailbreak is necessary for QuickCheck dependency. - vector = doJailbreak (if pkgs.stdenv.isi686 then appendConfigureFlag super.vector "--ghc-options=-msse2" else super.vector); + vector = doJailbreak (if pkgs.stdenv.isi686 then appendConfigureFlag "--ghc-options=-msse2" super.vector else super.vector); - inline-c-cpp = overrideCabal super.inline-c-cpp (drv: { + inline-c-cpp = overrideCabal (drv: { postPatch = (drv.postPatch or "") + '' substituteInPlace inline-c-cpp.cabal --replace "-optc-std=c++11" "" ''; - }); + }) super.inline-c-cpp; - inline-java = addBuildDepend super.inline-java pkgs.jdk; + inline-java = addBuildDepend pkgs.jdk super.inline-java; # Upstream notified by e-mail. permutation = dontCheck super.permutation; @@ -171,13 +171,13 @@ self: super: { digit = doJailbreak super.digit; hnix = generateOptparseApplicativeCompletion "hnix" - (overrideCabal (super.hnix.override { - # needs newer version of relude and semialign than stackage has - relude = self.relude_1_0_0_1; - semialign = self.semialign_1_2; - }) (drv: { + (overrideCabal (drv: { # 2020-06-05: HACK: does not pass own build suite - `dontCheck` doCheck = false; + }) (super.hnix.override { + # needs newer version of relude and semialign than stackage has + relude = self.relude_1_0_0_1; + semialign = self.semialign_1_2_0_1; })); # Fails for non-obvious reasons while attempting to use doctest. @@ -185,8 +185,8 @@ self: super: { search = dontCheck super.search; # see https://github.com/LumiGuide/haskell-opencv/commit/cd613e200aa20887ded83256cf67d6903c207a60 - opencv = dontCheck (appendPatch super.opencv ./patches/opencv-fix-116.patch); - opencv-extra = dontCheck (appendPatch super.opencv-extra ./patches/opencv-fix-116.patch); + opencv = dontCheck (appendPatch ./patches/opencv-fix-116.patch super.opencv); + opencv-extra = dontCheck (appendPatch ./patches/opencv-fix-116.patch super.opencv-extra); # https://github.com/ekmett/structures/issues/3 structures = dontCheck super.structures; @@ -257,17 +257,17 @@ self: super: { hgdbmi = dontCheck super.hgdbmi; hi = dontCheck super.hi; hierarchical-clustering = dontCheck super.hierarchical-clustering; - hlibgit2 = disableHardening super.hlibgit2 [ "format" ]; + hlibgit2 = disableHardening [ "format" ] super.hlibgit2; hmatrix-tests = dontCheck super.hmatrix-tests; hquery = dontCheck super.hquery; hs2048 = dontCheck super.hs2048; hsbencher = dontCheck super.hsbencher; hsexif = dontCheck super.hsexif; hspec-server = dontCheck super.hspec-server; - HTF = overrideCabal super.HTF (orig: { + HTF = overrideCabal (orig: { # The scripts in scripts/ are needed to build the test suite. preBuild = "patchShebangs --build scripts"; - }); + }) super.HTF; htsn = dontCheck super.htsn; htsn-import = dontCheck super.htsn-import; http-link-header = dontCheck super.http-link-header; # non deterministic failure https://hydra.nixos.org/build/75041105 @@ -278,10 +278,12 @@ self: super: { language-slice = dontCheck super.language-slice; ldap-client = dontCheck super.ldap-client; lensref = dontCheck super.lensref; - lvmrun = disableHardening (dontCheck super.lvmrun) ["format"]; + lvmrun = disableHardening ["format"] (dontCheck super.lvmrun); matplotlib = dontCheck super.matplotlib; # https://github.com/matterhorn-chat/matterhorn/issues/679 they do not want to be on stackage - matterhorn = doJailbreak super.matterhorn; # this is needed until the end of time :') + matterhorn = doJailbreak (super.matterhorn.overrideScope (self: super: { + brick = self.brick_0_64_2; + })); memcache = dontCheck super.memcache; metrics = dontCheck super.metrics; milena = dontCheck super.milena; @@ -369,7 +371,7 @@ self: super: { duplo = dontCheck super.duplo; # https://github.com/evanrinehart/mikmod/issues/1 - mikmod = addExtraLibrary super.mikmod pkgs.libmikmod; + mikmod = addExtraLibrary pkgs.libmikmod super.mikmod; # https://github.com/basvandijk/threads/issues/10 threads = dontCheck super.threads; @@ -385,7 +387,7 @@ self: super: { CHXHtml = dontDistribute super.CHXHtml; # https://github.com/NixOS/nixpkgs/issues/6350 - paypal-adaptive-hoops = overrideCabal super.paypal-adaptive-hoops (drv: { testTarget = "local"; }); + paypal-adaptive-hoops = overrideCabal (drv: { testTarget = "local"; }) super.paypal-adaptive-hoops; # Avoid "QuickCheck >=2.3 && <2.10" dependency we cannot fulfill in lts-11.x. test-framework = dontCheck super.test-framework; @@ -445,11 +447,11 @@ self: super: { doctest-discover = dontCheck super.doctest-discover; # Depends on itself for testing - tasty-discover = overrideCabal super.tasty-discover (drv: { + tasty-discover = overrideCabal (drv: { preBuild = '' export PATH="$PWD/dist/build/tasty-discover:$PATH" '' + (drv.preBuild or ""); - }); + }) super.tasty-discover; # Known issue with nondeterministic test suite failure # https://github.com/nomeata/tasty-expected-failure/issues/21 @@ -483,7 +485,7 @@ self: super: { fft = dontCheck super.fft; # This package can't be built on non-Windows systems. - Win32 = overrideCabal super.Win32 (drv: { broken = !pkgs.stdenv.isCygwin; }); + Win32 = overrideCabal (drv: { broken = !pkgs.stdenv.isCygwin; }) super.Win32; inline-c-win32 = dontDistribute super.inline-c-win32; Southpaw = dontDistribute super.Southpaw; @@ -491,7 +493,7 @@ self: super: { lhs2tex = dontDistribute super.lhs2tex; # https://ghc.haskell.org/trac/ghc/ticket/9825 - vimus = overrideCabal super.vimus (drv: { broken = pkgs.stdenv.isLinux && pkgs.stdenv.isi686; }); + vimus = overrideCabal (drv: { broken = pkgs.stdenv.isLinux && pkgs.stdenv.isi686; }) super.vimus; # https://github.com/kazu-yamamoto/logger/issues/42 logger = dontCheck super.logger; @@ -518,16 +520,16 @@ self: super: { Euterpea = doJailbreak super.Euterpea; # Install icons, metadata and cli program. - bustle = overrideCabal super.bustle (drv: { + bustle = overrideCabal (drv: { buildDepends = [ pkgs.libpcap ]; buildTools = with pkgs.buildPackages; [ gettext perl help2man ]; postInstall = '' make install PREFIX=$out ''; - }); + }) super.bustle; # Byte-compile elisp code for Emacs. - ghc-mod = overrideCabal super.ghc-mod (drv: { + ghc-mod = overrideCabal (drv: { preCheck = "export HOME=$TMPDIR"; testToolDepends = drv.testToolDepends or [] ++ [self.cabal-install]; doCheck = false; # https://github.com/kazu-yamamoto/ghc-mod/issues/335 @@ -538,11 +540,11 @@ self: super: { mkdir -p $data/share/emacs/site-lisp ln -s "$lispdir/"*.el{,c} $data/share/emacs/site-lisp/ ''; - }); + }) super.ghc-mod; # Build the latest git version instead of the official release. This isn't # ideal, but Chris doesn't seem to make official releases any more. - structured-haskell-mode = overrideCabal super.structured-haskell-mode (drv: { + structured-haskell-mode = overrideCabal (drv: { src = pkgs.fetchFromGitHub { owner = "projectional-haskell"; repo = "structured-haskell-mode"; @@ -559,10 +561,10 @@ self: super: { mkdir -p $data/share/emacs ln -s $lispdir $data/share/emacs/site-lisp ''; - }); + }) super.structured-haskell-mode; # Make elisp files available at a location where people expect it. - hindent = (overrideCabal super.hindent (drv: { + hindent = (overrideCabal (drv: { # We cannot easily byte-compile these files, unfortunately, because they # depend on a new version of haskell-mode that we don't have yet. postInstall = '' @@ -571,7 +573,7 @@ self: super: { ln -s $lispdir $data/share/emacs/site-lisp ''; doCheck = false; # https://github.com/chrisdone/hindent/issues/299 - })); + }) super.hindent); # https://github.com/bos/configurator/issues/22 configurator = dontCheck super.configurator; @@ -580,36 +582,36 @@ self: super: { concurrent-extra = dontCheck super.concurrent-extra; # https://github.com/bos/bloomfilter/issues/7 - bloomfilter = appendPatch super.bloomfilter ./patches/bloomfilter-fix-on-32bit.patch; + bloomfilter = appendPatch ./patches/bloomfilter-fix-on-32bit.patch super.bloomfilter; # https://github.com/ashutoshrishi/hunspell-hs/pull/3 - hunspell-hs = addPkgconfigDepend (dontCheck (appendPatch super.hunspell-hs ./patches/hunspell.patch)) pkgs.hunspell; + hunspell-hs = addPkgconfigDepend pkgs.hunspell (dontCheck (appendPatch ./patches/hunspell.patch super.hunspell-hs)); # https://github.com/pxqr/base32-bytestring/issues/4 base32-bytestring = dontCheck super.base32-bytestring; # Djinn's last release was 2014, incompatible with Semigroup-Monoid Proposal # https://github.com/augustss/djinn/pull/8 - djinn = appendPatch super.djinn (pkgs.fetchpatch { + djinn = appendPatch (pkgs.fetchpatch { url = "https://github.com/augustss/djinn/commit/6cb9433a137fb6b5194afe41d616bd8b62b95630.patch"; sha256 = "0s021y5nzrh74gfp8xpxpxm11ivzfs3jwg6mkrlyry3iy584xqil"; - }); + }) super.djinn; # We cannot build this package w/o the C library from <http://www.phash.org/>. phash = markBroken super.phash; # https://github.com/Philonous/hs-stun/pull/1 # Remove if a version > 0.1.0.1 ever gets released. - stunclient = overrideCabal super.stunclient (drv: { + stunclient = overrideCabal (drv: { postPatch = (drv.postPatch or "") + '' substituteInPlace source/Network/Stun/MappedAddress.hs --replace "import Network.Endian" "" ''; - }); + }) super.stunclient; d-bus = let # The latest release on hackage is missing necessary patches for recent compilers # https://github.com/Philonous/d-bus/issues/24 - newer = overrideSrc super.d-bus { + newer = overrideSrc { version = "unstable-2021-01-08"; src = pkgs.fetchFromGitHub { owner = "Philonous"; @@ -617,13 +619,13 @@ self: super: { rev = "fb8a948a3b9d51db618454328dbe18fb1f313c70"; hash = "sha256-R7/+okb6t9DAkPVUV70QdYJW8vRcvBdz4zKJT13jb3A="; }; - }; + } super.d-bus; # Add now required extension on recent compilers. # https://github.com/Philonous/d-bus/pull/23 - in appendPatch newer (pkgs.fetchpatch { + in appendPatch (pkgs.fetchpatch { url = "https://github.com/Philonous/d-bus/commit/e5f37900a3a301c41d98bdaa134754894c705681.patch"; sha256 = "6rQ7H9t483sJe1x95yLPAZ0BKTaRjgqQvvrQv7HkJRE="; - }); + }) newer; # * The standard libraries are compiled separately. # * We need multiple patches from master to fix compilation with @@ -631,20 +633,7 @@ self: super: { # removed when the next idris release (1.3.4 probably) comes # around. idris = generateOptparseApplicativeCompletion "idris" - (doJailbreak (dontCheck - (appendPatches super.idris [ - # compatibility with haskeline >= 0.8 - (pkgs.fetchpatch { - url = "https://github.com/idris-lang/Idris-dev/commit/89a87cf666eb8b27190c779e72d0d76eadc1bc14.patch"; - sha256 = "0fv493zlpgjsf57w0sncd4vqfkabfczp3xazjjmqw54m9rsfix35"; - }) - # compatibility with megaparsec >= 0.9 - (pkgs.fetchpatch { - url = "https://github.com/idris-lang/Idris-dev/commit/6ea9bc913877d765048d7cdb7fc5aec60b196fac.patch"; - sha256 = "0yms74d1xdxd1c08dnp45nb1ddzq54n6hqgzxx0r494wy614ir8q"; - }) - ]) - )); + (doJailbreak (dontCheck super.idris)); # https://github.com/pontarius/pontarius-xmpp/issues/105 pontarius-xmpp = dontCheck super.pontarius-xmpp; @@ -692,19 +681,14 @@ self: super: { # For 2.17 support: https://github.com/JonasDuregard/sized-functors/pull/10 size-based = doJailbreak super.size-based; - # Remove as soon as we update to monoid-extras 0.6 and unpin these packages - dual-tree = doJailbreak super.dual-tree; - diagrams-core = doJailbreak super.diagrams-core; + # https://github.com/diagrams/diagrams-braille/issues/1 + diagrams-braille = doJailbreak super.diagrams-braille; - # Apply patch from master to add compat with optparse-applicative >= 0.16. - # We unfortunately can't upgrade to 1.4.4 which includes this patch yet - # since it would require monoid-extras 0.6 which breaks other diagrams libs. - diagrams-lib = doJailbreak (appendPatch super.diagrams-lib - (pkgs.fetchpatch { - url = "https://github.com/diagrams/diagrams-lib/commit/4b9842c3e3d653be69af19778970337775e2404d.patch"; - sha256 = "0xqvzh3ip9i0nv8xnh41afxki64r259pxq8ir1a4v99ggnldpjaa"; - includes = [ "*/CmdLine.hs" ]; - })); + # https://github.com/timbod7/haskell-chart/pull/231#issuecomment-953745932 + Chart-diagrams = doJailbreak super.Chart-diagrams; + + # https://github.com/xu-hao/namespace/issues/1 + namespace = doJailbreak super.namespace; # https://github.com/diagrams/diagrams-solve/issues/4 diagrams-solve = dontCheck super.diagrams-solve; @@ -717,10 +701,10 @@ self: super: { # Test suite fails: https://github.com/lymar/hastache/issues/46. # Don't install internal mkReadme tool. - hastache = overrideCabal super.hastache (drv: { + hastache = overrideCabal (drv: { doCheck = false; postInstall = "rm $out/bin/mkReadme && rmdir $out/bin"; - }); + }) super.hastache; # Has a dependency on outdated versions of directory. cautious-file = doJailbreak (dontCheck super.cautious-file); @@ -738,14 +722,14 @@ self: super: { # Wrap the generated binaries to include their run-time dependencies in # $PATH. Also, cryptol needs a version of sbl that's newer than what we have # in LTS-13.x. - cryptol = overrideCabal super.cryptol (drv: { + cryptol = overrideCabal (drv: { buildTools = drv.buildTools or [] ++ [ pkgs.buildPackages.makeWrapper ]; postInstall = drv.postInstall or "" + '' for b in $out/bin/cryptol $out/bin/cryptol-html; do wrapProgram $b --prefix 'PATH' ':' "${pkgs.lib.getBin pkgs.z3}/bin" done ''; - }); + }) super.cryptol; # Tests try to invoke external process and process == 1.4 grakn = dontCheck (doJailbreak super.grakn); @@ -761,7 +745,7 @@ self: super: { c2hs = dontCheck super.c2hs; # Needs pginit to function and pgrep to verify. - tmp-postgres = overrideCabal super.tmp-postgres (drv: { + tmp-postgres = overrideCabal (drv: { # Flaky tests: https://github.com/jfischoff/tmp-postgres/issues/274 doCheck = false; @@ -770,7 +754,7 @@ self: super: { '' + (drv.preCheck or ""); libraryToolDepends = drv.libraryToolDepends or [] ++ [pkgs.buildPackages.postgresql]; testToolDepends = drv.testToolDepends or [] ++ [pkgs.procps]; - }); + }) super.tmp-postgres; # Needs QuickCheck <2.10, which we don't have. edit-distance = doJailbreak super.edit-distance; @@ -799,11 +783,11 @@ self: super: { # Jailbreak is necessary to break out of tasty < 1.x dependency. # hackage2nix generates this as a broken package due to the (fake) dependency # missing from hackage, so we need to fix the meta attribute set. - cryptohash-sha256 = overrideCabal super.cryptohash-sha256 (drv: { + cryptohash-sha256 = overrideCabal (drv: { jailbreak = true; broken = false; hydraPlatforms = pkgs.lib.platforms.all; - }); + }) super.cryptohash-sha256; # The test suite has all kinds of out-dated dependencies, so it feels easier # to just disable it. @@ -834,17 +818,17 @@ self: super: { protobuf = dontCheck super.protobuf; # Is this package still maintained? https://github.com/haskell/text-icu/issues/30 - text-icu = overrideCabal super.text-icu (drv: { + text-icu = overrideCabal (drv: { doCheck = false; # https://github.com/bos/text-icu/issues/32 configureFlags = ["--ghc-option=-DU_DEFINE_FALSE_AND_TRUE=1"]; # https://github.com/haskell/text-icu/issues/49 - }); + }) super.text-icu; # jailbreak tasty < 1.2 until servant-docs > 0.11.3 is on hackage. servant-docs = doJailbreak super.servant-docs; snap-templates = doJailbreak super.snap-templates; # https://github.com/snapframework/snap-templates/issues/22 # hledger-lib requires the latest version of pretty-simple - hledger-lib = appendPatch super.hledger-lib + hledger-lib = appendPatch # This patch has been merged but not released yet: # https://github.com/simonmichael/hledger/pull/1512. It is # important for ledger-autosync test suite: @@ -855,7 +839,8 @@ self: super: { sha256 = "10knvrd5bl9nrmi27i0pm82sfr64jy04xgbjp228qywyijpr3pqv"; includes = [ "Hledger/Read/CsvReader.hs" ]; stripLen = 1; - }); + }) + super.hledger-lib; # hledger-lib 1.23 depends on doctest >= 0.18 hledger-lib_1_23 = super.hledger-lib_1_23.override { @@ -864,7 +849,7 @@ self: super: { # Copy hledger man pages from data directory into the proper place. This code # should be moved into the cabal2nix generator. - hledger = overrideCabal super.hledger (drv: { + hledger = overrideCabal (drv: { postInstall = '' # Don't install files that don't belong into this package to avoid # conflicts when hledger and hledger-ui end up in the same profile. @@ -878,8 +863,8 @@ self: super: { mkdir -p $out/share/info cp -v embeddedfiles/*.info* $out/share/info/ ''; - }); - hledger-ui = overrideCabal super.hledger-ui (drv: { + }) super.hledger; + hledger-ui = overrideCabal (drv: { postInstall = '' for i in $(seq 1 9); do for j in *.$i; do @@ -890,8 +875,8 @@ self: super: { mkdir -p $out/share/info cp -v *.info* $out/share/info/ ''; - }); - hledger-web = overrideCabal super.hledger-web (drv: { + }) super.hledger-ui; + hledger-web = overrideCabal (drv: { preCheck = "export HOME=$TMPDIR"; postInstall = '' for i in $(seq 1 9); do @@ -903,7 +888,7 @@ self: super: { mkdir -p $out/share/info cp -v *.info* $out/share/info/ ''; - }); + }) super.hledger-web; # https://github.com/haskell-hvr/resolv/pull/6 @@ -914,20 +899,20 @@ self: super: { spdx = dontCheck super.spdx; # The test suite does not know how to find the 'alex' binary. - alex = overrideCabal super.alex (drv: { + alex = overrideCabal (drv: { testSystemDepends = (drv.testSystemDepends or []) ++ [pkgs.which]; preCheck = ''export PATH="$PWD/dist/build/alex:$PATH"''; - }); + }) super.alex; # This package refers to the wrong library (itself in fact!) vulkan = super.vulkan.override { vulkan = pkgs.vulkan-loader; }; # Compiles some C or C++ source which requires these headers - VulkanMemoryAllocator = addExtraLibrary super.VulkanMemoryAllocator pkgs.vulkan-headers; - vulkan-utils = addExtraLibrary super.vulkan-utils pkgs.vulkan-headers; + VulkanMemoryAllocator = addExtraLibrary pkgs.vulkan-headers super.VulkanMemoryAllocator; + vulkan-utils = addExtraLibrary pkgs.vulkan-headers super.vulkan-utils; # https://github.com/dmwit/encoding/pull/3 - encoding = doJailbreak (appendPatch super.encoding ./patches/encoding-Cabal-2.0.patch); + encoding = doJailbreak (appendPatch ./patches/encoding-Cabal-2.0.patch super.encoding); # Work around overspecified constraint on github ==0.18. github-backup = doJailbreak super.github-backup; @@ -976,38 +961,65 @@ self: super: { brittany = doJailbreak (dontCheck super.brittany); # Outdated upperbound on ghc-exactprint: https://github.com/lspitzner/brittany/issues/342 # Fix with Cabal 2.2, https://github.com/guillaume-nargeot/hpc-coveralls/pull/73 - hpc-coveralls = appendPatch super.hpc-coveralls (pkgs.fetchpatch { + hpc-coveralls = appendPatch (pkgs.fetchpatch { url = "https://github.com/guillaume-nargeot/hpc-coveralls/pull/73/commits/344217f513b7adfb9037f73026f5d928be98d07f.patch"; sha256 = "056rk58v9h114mjx62f41x971xn9p3nhsazcf9zrcyxh1ymrdm8j"; - }); + }) super.hpc-coveralls; # sexpr is old, broken and has no issue-tracker. Let's fix it the best we can. - sexpr = - appendPatch (overrideCabal super.sexpr (drv: { + sexpr = appendPatch ./patches/sexpr-0.2.1.patch + (overrideCabal (drv: { isExecutable = false; libraryHaskellDepends = drv.libraryHaskellDepends ++ [self.QuickCheck]; - })) ./patches/sexpr-0.2.1.patch; + }) super.sexpr); # https://github.com/haskell/hoopl/issues/50 hoopl = dontCheck super.hoopl; + # The most recent version of purescript-cst (0.4.0.0) has version + # bounds for LTS-17, so we need to jailbreak it for LTS-18. + # doJailbreak can likely be removed when the next version of + # purescript-cst is released, since the version bounds have + # been updated for LTS-18. + purescript-cst = doJailbreak super.purescript-cst; + purescript = - let - purescriptWithOverrides = super.purescript.override { - # PureScript requires an older version of happy. - happy = self.happy_1_19_9; - }; + pkgs.lib.pipe + (super.purescript.override { + # The latest version of language-javascript is 0.7.1.0, + # but it seems to have a bug with async support: + # https://github.com/erikd/language-javascript/issues/131 + language-javascript = self.language-javascript_0_7_0_0; + }) + [ # This PR upgrades purescript from building with LTS-17 to building + # with LTS-18. Aside from bumping dependency bounds, there is one + # minor change that needs to be made in app/Main.hs. + # + # This patch can likely be removed when purescript-0.14.6 is released. + (appendPatch + (pkgs.fetchpatch { + url = "https://patch-diff.githubusercontent.com/raw/purescript/purescript/pull/4199.patch"; + sha256 = "sha256-OeG30EfCHs7gttLME909WfKxkEZr7Ch3leYiw4lElGg="; + includes = [ + "app/Main.hs" + ]; + }) + ) + # PureScript uses nodejs to run tests, so the tests have been disabled + # for now. If someone is interested in figuring out how to get this + # working, it seems like it might be possible. + dontCheck + # The current version of purescript (0.14.5) has version bounds for LTS-17, + # but it compiles cleanly using deps in LTS-18 as well. This jailbreak can + # likely be removed when purescript-0.14.6 is released. + doJailbreak + # Generate shell completions + (generateOptparseApplicativeCompletion "purs") + ]; - # PureScript is built against LTS-13, so we need to jailbreak it to - # accept more recent versions of the libraries it requires. - jailBrokenPurescript = doJailbreak purescriptWithOverrides; - - # Haddocks for PureScript can't be built. - # https://github.com/purescript/purescript/pull/3745 - dontHaddockPurescript = dontHaddock jailBrokenPurescript; - in - # Generate shell completions - generateOptparseApplicativeCompletion "purs" dontHaddockPurescript; + # purenix-1.0 has a strict version bound requiring purescript-0.14.4, but it + # works with later versions of purescript as well. + purenix = doJailbreak super.purenix; # Generate shell completion for spago spago = generateOptparseApplicativeCompletion "spago" super.spago; @@ -1024,9 +1036,9 @@ self: super: { # TODO(Profpatsch): factor out local nix store setup from # lib/tests/release.nix and use that for the tests of libnix - # libnix = overrideCabal super.libnix (old: { + # libnix = overrideCabal (old: { # testToolDepends = old.testToolDepends or [] ++ [ pkgs.nix ]; - # }); + # }) super.libnix; libnix = dontCheck super.libnix; # dontCheck: The test suite tries to mess with ALSA, which doesn't work in the build sandbox. @@ -1040,20 +1052,20 @@ self: super: { beam-core = doJailbreak super.beam-core; # Requires pg_ctl command during tests - beam-postgres = overrideCabal super.beam-postgres (drv: { + beam-postgres = overrideCabal (drv: { testToolDepends = (drv.testToolDepends or []) ++ [pkgs.postgresql]; - }); + }) super.beam-postgres; # Fix for base >= 4.11 - scat = overrideCabal super.scat (drv: { + scat = overrideCabal (drv: { patches = [(pkgs.fetchpatch { url = "https://github.com/redelmann/scat/pull/6.diff"; sha256 = "07nj2p0kg05livhgp1hkkdph0j0a6lb216f8x348qjasy0lzbfhl"; })]; - }); + }) super.scat; # Fix build with attr-2.4.48 (see #53716) - xattr = appendPatch super.xattr ./patches/xattr-fix-build.patch; + xattr = appendPatch ./patches/xattr-fix-build.patch super.xattr; # Some tests depend on a postgresql instance esqueleto = dontCheck super.esqueleto; @@ -1079,13 +1091,13 @@ self: super: { openid = markBroken super.openid; # The test suite needs the packages's executables in $PATH to succeed. - arbtt = overrideCabal super.arbtt (drv: { + arbtt = overrideCabal (drv: { preCheck = '' for i in $PWD/dist/build/*; do export PATH="$i:$PATH" done ''; - }); + }) super.arbtt; # https://github.com/erikd/hjsmin/issues/32 hjsmin = dontCheck super.hjsmin; @@ -1094,7 +1106,7 @@ self: super: { language-ats = dontCheck super.language-ats; # Remove for hail > 0.2.0.0 - hail = overrideCabal super.hail (drv: { + hail = overrideCabal (drv: { patches = [ (pkgs.fetchpatch { # Relax dependency constraints, @@ -1109,7 +1121,7 @@ self: super: { sha256 = "0dpagpn654zjrlklihsg911lmxjj8msylbm3c68xa5aad1s9gcf7"; }) ]; - }); + }) super.hail; # https://github.com/kazu-yamamoto/dns/issues/150 dns = dontCheck super.dns; @@ -1125,18 +1137,20 @@ self: super: { perhaps = doJailbreak super.perhaps; # it wants to build a statically linked binary by default - hledger-flow = overrideCabal super.hledger-flow ( drv: { + hledger-flow = overrideCabal (drv: { postPatch = (drv.postPatch or "") + '' substituteInPlace hledger-flow.cabal --replace "-static" "" ''; - }); + }) super.hledger-flow; # Chart-tests needs and compiles some modules from Chart itself - Chart-tests = (addExtraLibrary super.Chart-tests self.QuickCheck).overrideAttrs (old: { - preCheck = old.postPatch or "" + '' + Chart-tests = overrideCabal (old: { + # https://github.com/timbod7/haskell-chart/issues/233 + jailbreak = true; + preCheck = old.preCheck or "" + '' tar --one-top-level=../chart --strip-components=1 -xf ${self.Chart.src} ''; - }); + }) (addExtraLibrary self.QuickCheck super.Chart-tests); # This breaks because of version bounds, but compiles and runs fine. # Last commit is 5 years ago, so we likely won't get upstream fixed soon. @@ -1163,32 +1177,32 @@ self: super: { # Fix EdisonAPI and EdisonCore for GHC 8.8: # https://github.com/robdockins/edison/pull/16 - EdisonAPI = appendPatch super.EdisonAPI (pkgs.fetchpatch { + EdisonAPI = appendPatch (pkgs.fetchpatch { url = "https://github.com/robdockins/edison/pull/16/commits/8da6c0f7d8666766e2f0693425c347c0adb492dc.patch"; postFetch = '' ${pkgs.buildPackages.patchutils}/bin/filterdiff --include='a/edison-api/*' --strip=1 "$out" > "$tmpfile" mv "$tmpfile" "$out" ''; sha256 = "0yi5pz039lcm4pl9xnl6krqxyqq5rgb5b6m09w0sfy06x0n4x213"; - }); + }) super.EdisonAPI; - EdisonCore = appendPatch super.EdisonCore (pkgs.fetchpatch { + EdisonCore = appendPatch (pkgs.fetchpatch { url = "https://github.com/robdockins/edison/pull/16/commits/8da6c0f7d8666766e2f0693425c347c0adb492dc.patch"; postFetch = '' ${pkgs.buildPackages.patchutils}/bin/filterdiff --include='a/edison-core/*' --strip=1 "$out" > "$tmpfile" mv "$tmpfile" "$out" ''; sha256 = "097wqn8hxsr50b9mhndg5pjim5jma2ym4ylpibakmmb5m98n17zp"; - }); + }) super.EdisonCore; # Pick patch from 1.6.0 which allows compilation with doctest 0.18 - polysemy = appendPatches super.polysemy [ + polysemy = appendPatches [ (pkgs.fetchpatch { name = "allow-doctest-0.18.patch"; url = "https://github.com/polysemy-research/polysemy/commit/dbcf851eb69395ce3143ecf2dd616dcad953a339.patch"; sha256 = "1qf5pghc8p1glwaadkr95x12d74vhb98mg8dqwilyxbc6gq763w2"; }) - ]; + ] super.polysemy; # polysemy-plugin 0.2.5.0 has constraint ghc-tcplugins-extra (==0.3.*) # This upstream issue is relevant: @@ -1234,10 +1248,10 @@ self: super: { # add unreleased commit fixing version constraint as a patch # Can be removed if https://github.com/lpeterse/haskell-utc/issues/8 is resolved - utc = appendPatch super.utc (pkgs.fetchpatch { + utc = appendPatch (pkgs.fetchpatch { url = "https://github.com/lpeterse/haskell-utc/commit/e4502c08591e80d411129bb7c0414539f6302aaf.diff"; sha256 = "0v6kv1d4syjzgzc2s7a76c6k4vminlcq62n7jg3nn9xd00gwmmv7"; - }); + }) super.utc; # Tests disabled because they assume to run in the whole jsaddle repo and not the hackage tarbal of jsaddle-warp. jsaddle-warp = dontCheck super.jsaddle-warp; @@ -1262,9 +1276,9 @@ self: super: { # Fixed upstream but not released to Hackage yet: # https://github.com/k0001/hs-libsodium/issues/2 - libsodium = overrideCabal super.libsodium (drv: { + libsodium = overrideCabal (drv: { libraryToolDepends = (drv.libraryToolDepends or []) ++ [self.buildHaskellPackages.c2hs]; - }); + }) super.libsodium; # https://github.com/kowainik/policeman/issues/57 policeman = doJailbreak super.policeman; @@ -1273,7 +1287,7 @@ self: super: { gi-cairo-render = doJailbreak super.gi-cairo-render; gi-cairo-connector = doJailbreak super.gi-cairo-connector; - svgcairo = appendPatches super.svgcairo [ + svgcairo = appendPatches [ # Remove when https://github.com/gtk2hs/svgcairo/pull/12 goes in. (pkgs.fetchpatch { url = "https://github.com/gtk2hs/svgcairo/commit/348c60b99c284557a522baaf47db69322a0a8b67.patch"; @@ -1284,17 +1298,17 @@ self: super: { url = "https://github.com/dalpd/svgcairo/commit/d1e0d7ae04c1edca83d5b782e464524cdda6ae85.patch"; sha256 = "1pq9ld9z67zsxj8vqjf82qwckcp69lvvnrjb7wsyb5jc6jaj3q0a"; }) - ]; + ] super.svgcairo; # Missing -Iinclude parameter to doc-tests (pull has been accepted, so should be resolved when 0.5.3 released) # https://github.com/lehins/massiv/pull/104 massiv = dontCheck super.massiv; # Upstream PR: https://github.com/jkff/splot/pull/9 - splot = appendPatch super.splot (pkgs.fetchpatch { + splot = appendPatch (pkgs.fetchpatch { url = "https://github.com/jkff/splot/commit/a6710b05470d25cb5373481cf1cfc1febd686407.patch"; sha256 = "1c5ck2ibag2gcyag6rjivmlwdlp5k0dmr8nhk7wlkzq2vh7zgw63"; - }); + }) super.splot; # Tests are broken because of missing files in hackage tarball. # https://github.com/jgm/commonmark-hs/issues/55 @@ -1315,7 +1329,11 @@ self: super: { Spock-core = dontCheck super.Spock-core; # hasura packages need some extra care - graphql-engine = overrideCabal (super.graphql-engine.overrideScope (self: super: { + graphql-engine = overrideCabal (drv: { + patches = [ ./patches/graphql-engine-mapkeys.patch ]; + doHaddock = false; + version = "2.0.9"; + }) (super.graphql-engine.overrideScope (self: super: { immortal = self.immortal_0_2_2_1; resource-pool = self.hasura-resource-pool; ekg-core = self.hasura-ekg-core; @@ -1324,11 +1342,7 @@ self: super: { hspec-core = dontCheck self.hspec-core_2_8_3; hspec-discover = dontCheck super.hspec-discover_2_8_3; tasty-hspec = self.tasty-hspec_1_2; - })) (drv: { - patches = [ ./patches/graphql-engine-mapkeys.patch ]; - doHaddock = false; - version = "2.0.9"; - }); + })); hasura-ekg-core = super.hasura-ekg-core.overrideScope (self: super: { hspec = dontCheck self.hspec_2_8_3; hspec-core = dontCheck self.hspec-core_2_8_3; @@ -1340,18 +1354,18 @@ self: super: { hspec-core = dontCheck self.hspec-core_2_8_3; hspec-discover = dontCheck super.hspec-discover_2_8_3; }); - pg-client = overrideCabal (super.pg-client.override { - resource-pool = self.hasura-resource-pool; - }) (drv: { + pg-client = overrideCabal (drv: { librarySystemDepends = with pkgs; [ postgresql krb5.dev openssl.dev ]; # wants a running DB to check against doCheck = false; + }) (super.pg-client.override { + resource-pool = self.hasura-resource-pool; }); # https://github.com/bos/statistics/issues/170 statistics = dontCheck super.statistics; - hcoord = overrideCabal super.hcoord (drv: { + hcoord = overrideCabal (drv: { # Remove when https://github.com/danfran/hcoord/pull/8 is merged. patches = [ (pkgs.fetchpatch { @@ -1361,7 +1375,7 @@ self: super: { ]; # Remove when https://github.com/danfran/hcoord/issues/9 is closed. doCheck = false; - }); + }) super.hcoord; # Tests rely on `Int` being 64-bit: https://github.com/hspec/hspec/issues/431. # Also, we need QuickCheck-2.14.x to build the test suite, which isn't easy in LTS-16.x. @@ -1386,14 +1400,14 @@ self: super: { # PATH. update-nix-fetchgit = let deps = [ pkgs.git pkgs.nix pkgs.nix-prefetch-git ]; in generateOptparseApplicativeCompletion "update-nix-fetchgit" (overrideCabal - (addTestToolDepends super.update-nix-fetchgit deps) (drv: { + (drv: { buildTools = drv.buildTools or [ ] ++ [ pkgs.buildPackages.makeWrapper ]; postInstall = drv.postInstall or "" + '' wrapProgram "$out/bin/update-nix-fetchgit" --prefix 'PATH' ':' "${ pkgs.lib.makeBinPath deps }" ''; - })); + }) (addTestToolDepends deps super.update-nix-fetchgit)); # Our quickcheck-instances is too old for the newer binary-instances, but # quickcheck-instances is only used in the tests of binary-instances. @@ -1486,15 +1500,15 @@ self: super: { hercules-ci-cli = generateOptparseApplicativeCompletion "hci" ( # See hercules-ci-optparse-applicative in non-hackage-packages.nix. addBuildDepend - (overrideCabal - (unmarkBroken super.hercules-ci-cli) - (drv: { hydraPlatforms = super.hercules-ci-cli.meta.platforms; })) super.hercules-ci-optparse-applicative + (overrideCabal + (drv: { hydraPlatforms = super.hercules-ci-cli.meta.platforms; }) + (unmarkBroken super.hercules-ci-cli)) ); # Readline uses Distribution.Simple from Cabal 2, in a way that is not # compatible with Cabal 3. No upstream repository found so far - readline = appendPatch super.readline ./patches/readline-fix-for-cabal-3.patch; + readline = appendPatch ./patches/readline-fix-for-cabal-3.patch super.readline; # 2020-12-05: this package requires a newer version of http-client, # but it still compiles with older version: @@ -1554,9 +1568,7 @@ self: super: { # Dependency to regex-tdfa-text can be removed for later regex-tdfa versions. # Fix protolude compilation error by applying patch from pull-request. # Override can be removed for the next release > 0.8.0. - yarn2nix = overrideCabal (super.yarn2nix.override { - regex-tdfa-text = null; - }) (attrs: { + yarn2nix = overrideCabal (attrs: { jailbreak = true; # remove dependency on regex-tdfa-text # which has been merged into regex-tdfa @@ -1571,6 +1583,8 @@ self: super: { includes = [ "*/ResolveLockfile.hs" ]; }) ]; + }) (super.yarn2nix.override { + regex-tdfa-text = null; }); # cabal-install switched to build type simple in 3.2.0.0 @@ -1581,26 +1595,26 @@ self: super: { # override. # The commit that introduced this change: # https://github.com/haskell/cabal/commit/91ac075930c87712eeada4305727a4fa651726e7 - cabal-install = overrideCabal super.cabal-install (old: { + cabal-install = overrideCabal (old: { postInstall = old.postInstall + '' mkdir -p "$out/share/man/man1" "$out/bin/cabal" man --raw > "$out/share/man/man1/cabal.1" ''; - }); + }) super.cabal-install; # while waiting for a new release: https://github.com/brendanhay/amazonka/pull/572 - amazonka = appendPatches (doJailbreak super.amazonka) [ + amazonka = appendPatches [ (pkgs.fetchpatch { stripLen = 1; url = "https://github.com/brendanhay/amazonka/commit/43ddd87b1ebd6af755b166e16336259ec025b337.patch"; sha256 = "1x9l5xgvrh908di6whpavyp08cys11v3yn6rc21zw87xiyigdbi3"; }) - ]; + ] (doJailbreak super.amazonka); # Test suite does not compile. feed = dontCheck super.feed; - spacecookie = overrideCabal super.spacecookie (old: { + spacecookie = overrideCabal (old: { buildTools = (old.buildTools or []) ++ [ pkgs.buildPackages.installShellFiles ]; # let testsuite discover the resulting binary preCheck = '' @@ -1610,7 +1624,7 @@ self: super: { postInstall = '' installManPage docs/man/* '' + (old.postInstall or ""); - }); + }) super.spacecookie; # Patch and jailbreak can be removed at next release, chatter > 0.9.1.0 # * Remove dependency on regex-tdfa-text @@ -1618,11 +1632,11 @@ self: super: { # * Disable test suite which doesn't compile # https://github.com/creswick/chatter/issues/38 chatter = appendPatch - (dontCheck (doJailbreak (super.chatter.override { regex-tdfa-text = null; }))) (pkgs.fetchpatch { url = "https://github.com/creswick/chatter/commit/e8c15a848130d7d27b8eb5e73e8a0db1366b2e62.patch"; sha256 = "1dzak8d12h54vss5fxnrclygz0fz9ygbqvxd5aifz5n3vrwwpj3g"; - }); + }) + (dontCheck (doJailbreak (super.chatter.override { regex-tdfa-text = null; }))); # test suite doesn't compile anymore due to changed hunit/tasty APIs fullstop = dontCheck super.fullstop; @@ -1658,15 +1672,15 @@ self: super: { # Too strict version bounds on base16-bytestring and http-link-header. # This patch will be merged when next release comes. - github = appendPatch super.github (pkgs.fetchpatch { + github = appendPatch (pkgs.fetchpatch { url = "https://github.com/phadej/github/commit/514b175851dd7c4a9722ff203dd6f652a15d33e8.patch"; sha256 = "0pmx54xd7ah85y9mfi5366wbnwrp918j0wbx8yw8hrdac92qi4gh"; - }); + }) super.github; # list `modbus` in librarySystemDepends, correct to `libmodbus` - libmodbus = overrideCabal super.libmodbus (drv: { + libmodbus = overrideCabal (drv: { librarySystemDepends = [ pkgs.libmodbus ]; - }); + }) super.libmodbus; # 2021-04-02: Outdated optparse-applicative bound is fixed but not realeased on upstream. trial-optparse-applicative = assert super.trial-optparse-applicative.version == "0.0.0.0"; doJailbreak super.trial-optparse-applicative; @@ -1676,18 +1690,18 @@ self: super: { # 2021-04-02: iCalendar is basically unmaintained. # There are PRs for bumping the bounds: https://github.com/chrra/iCalendar/pull/46 - iCalendar = overrideCabal (doJailbreak super.iCalendar) { + iCalendar = overrideCabal { # Overriding bounds behind a cabal flag preConfigure = ''substituteInPlace iCalendar.cabal --replace "network >=2.6 && <2.7" "network -any"''; - }; + } (doJailbreak super.iCalendar); # Apply patch from master relaxing the version bounds on tasty. # Can be removed at next release (current is 0.10.1.0). - ginger = appendPatch super.ginger + ginger = appendPatch (pkgs.fetchpatch { url = "https://github.com/tdammers/ginger/commit/bd8cb39c1853d4fb4f663c4c201884575906acea.patch"; sha256 = "1rdy53k0384g52bnc59j1f0i13hr4lbnbksfsabr4av6zmw9wmzf"; - }); + }) super.ginger; # Too strict version bounds on cryptonite # https://github.com/obsidiansystems/haveibeenpwned/issues/7 @@ -1722,7 +1736,7 @@ self: super: { # is merged and released: # * https://gitlab.haskell.org/ghc/ghc/-/issues/19638 # * https://gitlab.haskell.org/ghc/ghc/-/merge_requests/5454 - ghc-bignum = overrideCabal super.ghc-bignum (old: { + ghc-bignum = overrideCabal (old: { configureFlags = (old.configureFlags or []) ++ [ "-f" "Native" ]; patches = (old.patches or []) ++ [ (pkgs.fetchpatch { @@ -1731,7 +1745,7 @@ self: super: { stripLen = 2; }) ]; - }); + }) super.ghc-bignum; # 2021-04-09: outdated base and alex-tools # PR pending https://github.com/glguy/language-lua/pull/6 @@ -1746,19 +1760,19 @@ self: super: { lzma-static = doJailbreak super.lzma-static; # Fix haddock errors: https://github.com/koalaman/shellcheck/issues/2216 - ShellCheck = appendPatch super.ShellCheck (pkgs.fetchpatch { + ShellCheck = appendPatch (pkgs.fetchpatch { url = "https://github.com/koalaman/shellcheck/commit/9e60b3ea841bcaf48780bfcfc2e44aa6563a62de.patch"; sha256 = "1vmg8mmmnph34x7y0mhkcd5nzky8f1rh10pird750xbkp9zlk099"; excludes = ["test/buildtest"]; - }); + }) super.ShellCheck; # Too strict version bounds on base: # https://github.com/obsidiansystems/database-id/issues/1 database-id-class = doJailbreak super.database-id-class; - cabal2nix-unstable = overrideCabal super.cabal2nix-unstable { + cabal2nix-unstable = overrideCabal { passthru.updateScript = ../../../maintainers/scripts/haskell/update-cabal2nix-unstable.sh; - }; + } super.cabal2nix-unstable; # Too strict version bounds on base # https://github.com/gibiansky/IHaskell/issues/1217 @@ -1767,37 +1781,38 @@ self: super: { # Fixes too strict version bounds on regex libraries # Presumably to be removed at the next release - yi-language = appendPatch super.yi-language (pkgs.fetchpatch { + yi-language = appendPatch (pkgs.fetchpatch { url = "https://github.com/yi-editor/yi/commit/0d3bcb5ba4c237d57ce33a3dc39b63c56d890765.patch"; sha256 = "0r4mzngs0x1akqpajzx7ssa9rax977fvj5ra8d3grfbpx6z0nm01"; includes = [ "yi-language.cabal" ]; stripLen = 2; extraPrefix = ""; - }); + }) super.yi-language; # https://github.com/ghcjs/jsaddle/issues/123 - jsaddle = overrideCabal super.jsaddle (drv: { + jsaddle = overrideCabal (drv: { # lift conditional version constraint on ref-tf postPatch = '' sed -i 's/ref-tf.*,/ref-tf,/' jsaddle.cabal '' + (drv.postPatch or ""); - }); + }) super.jsaddle; # Tests need to lookup target triple x86_64-unknown-linux # https://github.com/llvm-hs/llvm-hs/issues/334 - llvm-hs = overrideCabal super.llvm-hs { + llvm-hs = overrideCabal { doCheck = pkgs.stdenv.targetPlatform.system == "x86_64-linux"; - }; + } super.llvm-hs; # * Fix build failure by picking patch from 8.5, we need # this version of sbv for petrinizer # * Pin version of crackNum that still exposes its library - sbv_7_13 = appendPatch (super.sbv_7_13.override { - crackNum = self.crackNum_2_4; - }) (pkgs.fetchpatch { - url = "https://github.com/LeventErkok/sbv/commit/57014b9c7c67dd9b63619a996e2c66e32c33c958.patch"; - sha256 = "10npa8nh2413n6p6qld795qfkbld08icm02bspmk93y0kabpgmgm"; - }); + sbv_7_13 = appendPatch (pkgs.fetchpatch { + url = "https://github.com/LeventErkok/sbv/commit/57014b9c7c67dd9b63619a996e2c66e32c33c958.patch"; + sha256 = "10npa8nh2413n6p6qld795qfkbld08icm02bspmk93y0kabpgmgm"; + }) + (super.sbv_7_13.override { + crackNum = self.crackNum_2_4; + }); # Too strict bounds on dimensional # https://github.com/enomsg/science-constants-dimensional/pull/1 @@ -1826,7 +1841,7 @@ self: super: { # Build haskell-ci from git repository, including some useful fixes, # e. g. required for generating the workflows for the cabal2nix repository - haskell-ci-unstable = (overrideSrc super.haskell-ci { + haskell-ci-unstable = (overrideSrc { version = "0.13.20211011"; src = pkgs.fetchFromGitHub { owner = "haskell-CI"; @@ -1834,23 +1849,23 @@ self: super: { rev = "c88e67e675bc4a990da53863c7fb42e67bcf9847"; sha256 = "1zhv1cg047lfyxfs3mvc73vv96pn240zaj7f2yl4lw5yj6y5rfk9"; }; - }).overrideScope (self: super: { - attoparsec = self.attoparsec_0_14_1; + } super.haskell-ci).overrideScope (self: super: { + attoparsec = self.attoparsec_0_14_2; Cabal = self.Cabal_3_6_2_0; }); - Frames-streamly = overrideCabal (super.Frames-streamly.override { relude = super.relude_1_0_0_1; }) (drv: { + Frames-streamly = overrideCabal (drv: { # https://github.com/adamConnerSax/Frames-streamly/issues/1 patchPhase = '' cat > example_data/acs100k.csv <<EOT "YEAR","REGION","STATEFIP","DENSITY","METRO","PUMA","PERWT","SEX","AGE","RACE","RACED","HISPAN","HISPAND","CITIZEN","LANGUAGE","LANGUAGED","SPEAKENG","EDUC","EDUCD","GRADEATT","GRADEATTD","EMPSTAT","EMPSTATD","INCTOT","INCSS","POVERTY" 2006,32,1,409.6,3,2300,87.0,1,47,1,100,0,0,0,1,100,3,6,65,0,0,1,12,36000,0,347 EOT - ''; }); + ''; }) (super.Frames-streamly.override { relude = super.relude_1_0_0_1; }); # 2021-05-09: compilation requires patches from master, # remove at next release (current is 0.1.0.4). - large-hashable = overrideCabal super.large-hashable (drv: { + large-hashable = overrideCabal (drv: { # fix line endings which are an issue all of a sudden for an unknown reason prePatch = '' find . -type f -print0 | xargs -0 ${pkgs.buildPackages.dos2unix}/bin/dos2unix @@ -1873,13 +1888,13 @@ EOT sha256 = "1sf9h3k8jbbgfshzrclaawlwx7k2frb09z2a64f93jhvk6ci6vgx"; }) ]; - }); + }) super.large-hashable; # BSON defaults to requiring network instead of network-bsd which is # required nowadays: https://github.com/mongodb-haskell/bson/issues/26 - bson = appendConfigureFlag (super.bson.override { + bson = appendConfigureFlag "-f-_old_network" (super.bson.override { network = self.network-bsd; - }) "-f-_old_network"; + }); # 2021-05-14: Testsuite is failing. # https://github.com/kcsongor/generic-lens/issues/133 @@ -1887,7 +1902,7 @@ EOT # 2021-05-19: Allow random 1.2.0 # Remove at (presumably next release) which is > 1.3.1.0 - hashable = overrideCabal super.hashable (drv: { + hashable = overrideCabal (drv: { patches = [ (pkgs.fetchpatch { url = "https://github.com/haskell-unordered-containers/hashable/commit/78fa8fdb4f8bec5d221f34110d6afa0d0a00b5f9.patch"; @@ -1898,7 +1913,7 @@ EOT prePatch = '' ${pkgs.buildPackages.dos2unix}/bin/dos2unix hashable.cabal '' + (drv.prePatch or ""); - }); + }) super.hashable; # Too strict bound on random # https://github.com/haskell-hvr/missingh/issues/56 @@ -1906,17 +1921,17 @@ EOT # Disable flaky tests # https://github.com/DavidEichmann/alpaca-netcode/issues/2 - alpaca-netcode = overrideCabal super.alpaca-netcode { + alpaca-netcode = overrideCabal { testFlags = [ "--pattern" "!/[NOCI]/" ]; - }; + } super.alpaca-netcode; # 2021-05-22: Tests fail sometimes (even consistently on hydra) # when running a fs-related test with >= 12 jobs. To work around # this, run tests with only a single job. # https://github.com/vmchale/libarchive/issues/20 - libarchive = overrideCabal super.libarchive { + libarchive = overrideCabal { testFlags = [ "-j1" ]; - }; + } super.libarchive; # unrestrict bounds for hashable and semigroups # https://github.com/HeinrichApfelmus/reactive-banana/issues/215 @@ -1959,17 +1974,18 @@ EOT hspec-golden-aeson_0_9_0_0 = dontCheck super.hspec-golden-aeson_0_9_0_0; # 2021-10-02: Doesn't compile with optics < 0.4 - ghcup = overrideCabal (super.ghcup.override { + # 2021-11-05: streamly-0.8.0 is required for libyaml-streamly and + # yaml-streamly, as these aren't leaf packages it's not really + # appropriate to override them themselves (although ghcup is + # currently the only consumer) + # 2021-11-05: jailBreak the too tight upper bound on haskus-utils-variant + ghcup = doJailbreak (super.ghcup.overrideScope (self: super: { hspec-golden-aeson = self.hspec-golden-aeson_0_9_0_0; optics = self.optics_0_4; - }) (drv: { - # golden files are not shipped with the hackage tarball and hspec-golden-aeson - # needs some encouraging to create the missing files after version 0.8.0.0. - # See: https://gitlab.haskell.org/haskell/ghcup-hs/-/issues/255 - preCheck = assert drv.version == "0.1.17.2"; '' - export CREATE_MISSING_GOLDEN=yes - '' + (drv.preCheck or ""); - }); + streamly = self.streamly_0_8_0; + Cabal = self.Cabal_3_6_2_0; + libyaml-streamly = markUnbroken super.libyaml-streamly; + })); # Break out of "Cabal < 3.2" constraint. stylish-haskell = doJailbreak super.stylish-haskell; @@ -1988,10 +2004,6 @@ EOT assert pkgs.lib.versionOlder self.hspec.version "2.8.2"; doJailbreak super.graphql; - # Test suite doesn't build with base16-bytestring >= 1.0.0.0 - # https://github.com/emilypi/Base16/issues/9 - base16 = dontCheck super.base16; - # gtk2hsC2hs fails to build on certain architectures (aarch64, ppc64(le), ...) # with a linker error. As a workaround, we build gtk2hs-buildtools with -O0 # as suggested in the GHC thread below. An alternative to this could be to use @@ -2000,16 +2012,16 @@ EOT # * https://gitlab.haskell.org/ghc/ghc/-/issues/17203 # * https://github.com/gtk2hs/gtk2hs/issues/305 # * https://github.com/gtk2hs/gtk2hs/issues/279 - gtk2hs-buildtools = appendConfigureFlags super.gtk2hs-buildtools + gtk2hs-buildtools = appendConfigureFlags (pkgs.lib.optionals (with pkgs.stdenv.hostPlatform; isAarch64 || isPowerPC) [ "--ghc-option=-O0" - ]); + ]) super.gtk2hs-buildtools; # https://github.com/ajscholl/basic-cpuid/pull/1 - basic-cpuid = appendPatch super.basic-cpuid (pkgs.fetchpatch { + basic-cpuid = appendPatch (pkgs.fetchpatch { url = "https://github.com/ajscholl/basic-cpuid/commit/2f2bd7a7b53103fb0cf26883f094db9d7659887c.patch"; sha256 = "0l15ccfdys100jf50s9rr4p0d0ikn53bkh7a9qlk9i0y0z5jc6x1"; - }); + }) super.basic-cpuid; # Needs Cabal >= 3.4 chs-cabal = super.chs-cabal.override { @@ -2019,25 +2031,13 @@ EOT # 2021-08-18: streamly-posix was released with hspec 2.8.2, but it works with older versions too. streamly-posix = doJailbreak super.streamly-posix; - # https://github.com/hadolint/language-docker/issues/72 - language-docker_10_2_0 = overrideCabal super.language-docker_10_2_0 (drv: { - testFlags = (drv.testFlags or []) ++ [ - "--skip=/Language.Docker.Integration/parse" - ]; - }); - - # 2021-09-06: hadolint depends on language-docker >= 10.1 - hadolint = super.hadolint.override { - language-docker = self.language-docker_10_2_0; - }; - # 2021-09-13: hls 1.3 needs a newer lsp than stackage-lts. (lsp >= 1.2.0.1) # (hls is nearly the only consumer, but consists of 18 packages, so we bump lsp globally.) lsp = doDistribute self.lsp_1_2_0_1; lsp-types = doDistribute self.lsp-types_1_3_0_1; # Not running the "example" test because it requires a binary from lsps test # suite which is not part of the output of lsp. - lsp-test = doDistribute (overrideCabal self.lsp-test_0_14_0_1 (old: { testTarget = "tests func-test"; })); + lsp-test = doDistribute (overrideCabal (old: { testTarget = "tests func-test"; }) self.lsp-test_0_14_0_1); # 2021-09-14: Tests are flaky. hls-splice-plugin = dontCheck super.hls-splice-plugin; @@ -2064,11 +2064,27 @@ EOT # Fixes https://github.com/NixOS/nixpkgs/issues/140613 # https://github.com/recursion-schemes/recursion-schemes/issues/128 - recursion-schemes = appendPatch super.recursion-schemes ./patches/recursion-schemes-128.patch; + recursion-schemes = appendPatch ./patches/recursion-schemes-128.patch super.recursion-schemes; # Fix from https://github.com/brendanhay/gogol/pull/144 which has seen no release # Can't use fetchpatch as it required tweaking the line endings as the .cabal # file revision on hackage was gifted CRLF line endings - gogol-core = appendPatch super.gogol-core ./patches/gogol-core-144.patch; + gogol-core = appendPatch ./patches/gogol-core-144.patch super.gogol-core; + + # 2021-11-05: patch to permit our language-docker version + # This is based on c931c0a9689cd6dff4d2083fa002414c1f08a586 from + # language-docker upstream + hadolint = appendPatch (pkgs.fetchpatch { + url = "https://github.com/hadolint/hadolint/commit/c931c0a9689cd6dff4d2083fa002414c1f08a586.patch"; + sha256 = "1kv06hfn7lgrcrg56q8lq0pvdffqvmjbshazg3prlhl3kjs541f8"; + excludes = [ "stack.yaml" "package.yaml" "hadolint.cabal" ]; + }) (super.hadolint.override { + language-docker = self.language-docker_10_3_0; + }); + + # These should be updated in lockstep + hledger_1_23 = super.hledger_1_23.override { + hledger-lib = self.hledger-lib_1_23; + }; } // import ./configuration-tensorflow.nix {inherit pkgs haskellLib;} self super diff --git a/pkgs/development/haskell-modules/configuration-darwin.nix b/pkgs/development/haskell-modules/configuration-darwin.nix index 39e025cbd268..2f632c6a90c0 100644 --- a/pkgs/development/haskell-modules/configuration-darwin.nix +++ b/pkgs/development/haskell-modules/configuration-darwin.nix @@ -18,21 +18,21 @@ self: super: ({ __darwinAllowLocalNetworking = true; }); - halive = addBuildDepend super.halive darwin.apple_sdk.frameworks.AppKit; + halive = addBuildDepend darwin.apple_sdk.frameworks.AppKit super.halive; # Hakyll's tests are broken on Darwin (3 failures); and they require util-linux - hakyll = overrideCabal super.hakyll { + hakyll = overrideCabal { testToolDepends = []; doCheck = false; - }; + } super.hakyll; - barbly = addBuildDepend super.barbly darwin.apple_sdk.frameworks.AppKit; + barbly = addBuildDepend darwin.apple_sdk.frameworks.AppKit super.barbly; - double-conversion = addExtraLibrary super.double-conversion pkgs.libcxx; + double-conversion = addExtraLibrary pkgs.libcxx super.double-conversion; - apecs-physics = addPkgconfigDepends super.apecs-physics [ + apecs-physics = addPkgconfigDepends [ darwin.apple_sdk.frameworks.ApplicationServices - ]; + ] super.apecs-physics; # "erf table" test fails on Darwin # https://github.com/bos/math-functions/issues/63 @@ -40,11 +40,11 @@ self: super: ({ # darwin doesn't have sub-second resolution # https://github.com/hspec/mockery/issues/11 - mockery = overrideCabal super.mockery (drv: { + mockery = overrideCabal (drv: { preCheck = '' export TRAVIS=true '' + (drv.preCheck or ""); - }); + }) super.mockery; # https://github.com/ndmitchell/shake/issues/206 shake = dontCheck super.shake; @@ -53,18 +53,18 @@ self: super: ({ # gtk/gtk3 needs to be told on Darwin to use the Quartz # rather than X11 backend (see eg https://github.com/gtk2hs/gtk2hs/issues/249). - gtk3 = appendConfigureFlag super.gtk3 "-f have-quartz-gtk"; - gtk = appendConfigureFlag super.gtk "-f have-quartz-gtk"; + gtk3 = appendConfigureFlag "-f have-quartz-gtk" super.gtk3; + gtk = appendConfigureFlag "-f have-quartz-gtk" super.gtk; - OpenAL = addExtraLibrary super.OpenAL darwin.apple_sdk.frameworks.OpenAL; + OpenAL = addExtraLibrary darwin.apple_sdk.frameworks.OpenAL super.OpenAL; - al = overrideCabal super.al (drv: { + al = overrideCabal (drv: { libraryFrameworkDepends = [ darwin.apple_sdk.frameworks.OpenAL ] ++ (drv.libraryFrameworkDepends or []); - }); + }) super.al; - proteaaudio = addExtraLibrary super.proteaaudio darwin.apple_sdk.frameworks.AudioToolbox; + proteaaudio = addExtraLibrary darwin.apple_sdk.frameworks.AudioToolbox super.proteaaudio; # the system-fileio tests use canonicalizePath, which fails in the sandbox system-fileio = dontCheck super.system-fileio; @@ -80,17 +80,17 @@ self: super: ({ # TODO(matthewbauer): If someone really needs this to work in sandboxes, # I think we can add a propagatedImpureHost dep here, but I’m hoping to # get a proper fix available soonish. - x509-system = overrideCabal super.x509-system (drv: + x509-system = overrideCabal (drv: lib.optionalAttrs (!pkgs.stdenv.cc.nativeLibc) { postPatch = '' substituteInPlace System/X509/MacOS.hs --replace security /usr/bin/security '' + (drv.postPatch or ""); - }); + }) super.x509-system; # https://github.com/haskell-foundation/foundation/pull/412 foundation = dontCheck super.foundation; - llvm-hs = overrideCabal super.llvm-hs (oldAttrs: { + llvm-hs = overrideCabal (oldAttrs: { # One test fails on darwin. doCheck = false; # llvm-hs's Setup.hs file tries to add the lib/ directory from LLVM8 to @@ -100,20 +100,20 @@ self: super: ({ preCompileBuildDriver = '' substituteInPlace Setup.hs --replace "addToLdLibraryPath libDir" "pure ()" '' + (oldAttrs.preCompileBuildDriver or ""); - }); + }) super.llvm-hs; - yesod-bin = addBuildDepend super.yesod-bin darwin.apple_sdk.frameworks.Cocoa; + yesod-bin = addBuildDepend darwin.apple_sdk.frameworks.Cocoa super.yesod-bin; - hmatrix = addBuildDepend super.hmatrix darwin.apple_sdk.frameworks.Accelerate; + hmatrix = addBuildDepend darwin.apple_sdk.frameworks.Accelerate super.hmatrix; - blas-hs = overrideCabal super.blas-hs (drv: { + blas-hs = overrideCabal (drv: { libraryFrameworkDepends = [ darwin.apple_sdk.frameworks.Accelerate ] ++ (drv.libraryFrameworkDepends or []); - }); + }) super.blas-hs; # Ensure the necessary frameworks are propagatedBuildInputs on darwin - OpenGLRaw = overrideCabal super.OpenGLRaw (drv: { + OpenGLRaw = overrideCabal (drv: { librarySystemDepends = []; libraryHaskellDepends = drv.libraryHaskellDepends ++ [ darwin.apple_sdk.frameworks.OpenGL @@ -123,14 +123,14 @@ self: super: ({ frameworkPaths=$(IFS=, ; echo "''${frameworkPaths[@]}") configureFlags+=$(if [ -n "$frameworkPaths" ]; then echo -n "--ghc-options=-optl=$frameworkPaths"; fi) '' + (drv.preConfigure or ""); - }); - GLURaw = overrideCabal super.GLURaw (drv: { + }) super.OpenGLRaw; + GLURaw = overrideCabal (drv: { librarySystemDepends = []; libraryHaskellDepends = drv.libraryHaskellDepends ++ [ darwin.apple_sdk.frameworks.OpenGL ]; - }); - bindings-GLFW = overrideCabal super.bindings-GLFW (drv: { + }) super.GLURaw; + bindings-GLFW = overrideCabal (drv: { librarySystemDepends = []; libraryHaskellDepends = drv.libraryHaskellDepends ++ [ darwin.apple_sdk.frameworks.AGL @@ -141,13 +141,13 @@ self: super: ({ darwin.apple_sdk.frameworks.CoreVideo darwin.CF ]; - }); - OpenCL = overrideCabal super.OpenCL (drv: { + }) super.bindings-GLFW; + OpenCL = overrideCabal (drv: { librarySystemDepends = []; libraryHaskellDepends = drv.libraryHaskellDepends ++ [ darwin.apple_sdk.frameworks.OpenCL ]; - }); + }) super.OpenCL; # cabal2nix likes to generate dependencies on hinotify when hfsevents is # really required on darwin: https://github.com/NixOS/cabal2nix/issues/146. @@ -155,37 +155,37 @@ self: super: ({ # FSEvents API is very buggy and tests are unreliable. See # http://openradar.appspot.com/10207999 and similar issues. - fsnotify = addBuildDepend (dontCheck super.fsnotify) - darwin.apple_sdk.frameworks.Cocoa; + fsnotify = addBuildDepend darwin.apple_sdk.frameworks.Cocoa + (dontCheck super.fsnotify); - FractalArt = overrideCabal super.FractalArt (drv: { + FractalArt = overrideCabal (drv: { librarySystemDepends = [ darwin.libobjc darwin.apple_sdk.frameworks.AppKit ] ++ (drv.librarySystemDepends or []); - }); + }) super.FractalArt; - arbtt = overrideCabal super.arbtt (drv: { + arbtt = overrideCabal (drv: { librarySystemDepends = [ darwin.apple_sdk.frameworks.Foundation darwin.apple_sdk.frameworks.Carbon darwin.apple_sdk.frameworks.IOKit ] ++ (drv.librarySystemDepends or []); - }); + }) super.arbtt; - HTF = overrideCabal super.HTF (drv: { + HTF = overrideCabal (drv: { # GNU find is not prefixed in stdenv postPatch = '' substituteInPlace scripts/local-htfpp --replace "find=gfind" "find=find" '' + (drv.postPatch or ""); - }); + }) super.HTF; # conditional dependency via a cabal flag - cas-store = overrideCabal super.cas-store (drv: { + cas-store = overrideCabal (drv: { libraryHaskellDepends = [ self.kqueue ] ++ (drv.libraryHaskellDepends or []); - }); + }) super.cas-store; # 2021-05-25: Tests fail and I have no way to debug them. hls-class-plugin = dontCheck super.hls-class-plugin; @@ -204,13 +204,13 @@ self: super: ({ # On darwin librt doesn't exist and will fail to link against, # however linking against it is also not necessary there - GLHUI = overrideCabal super.GLHUI (drv: { + GLHUI = overrideCabal (drv: { postPatch = '' substituteInPlace GLHUI.cabal --replace " rt" "" '' + (drv.postPatch or ""); - }); + }) super.GLHUI; - SDL-image = overrideCabal super.SDL-image (drv: { + SDL-image = overrideCabal (drv: { # Prevent darwin-specific configuration code path being taken # which doesn't work with nixpkgs' SDL libraries postPatch = '' @@ -220,18 +220,18 @@ self: super: ({ # Work around SDL_main.h redefining main to SDL_main ./patches/SDL-image-darwin-hsc.patch ]; - }); + }) super.SDL-image; # Prevent darwin-specific configuration code path being taken which # doesn't work with nixpkgs' SDL libraries - SDL-mixer = overrideCabal super.SDL-mixer (drv: { + SDL-mixer = overrideCabal (drv: { postPatch = '' substituteInPlace configure --replace xDarwin noDarwinSpecialCasing '' + (drv.postPatch or ""); - }); + }) super.SDL-mixer; # Work around SDL_main.h redefining main to SDL_main - SDL-ttf = appendPatch super.SDL-ttf ./patches/SDL-ttf-darwin-hsc.patch; + SDL-ttf = appendPatch ./patches/SDL-ttf-darwin-hsc.patch super.SDL-ttf; # Disable a bunch of test suites that fail because of darwin's case insensitive # file system: When a test suite has a test suite file that has the same name @@ -242,17 +242,19 @@ self: super: ({ # should create issues for them. # https://github.com/typeclasses/aws-cloudfront-signed-cookies/issues/2 aws-cloudfront-signed-cookies = dontCheck super.aws-cloudfront-signed-cookies; - # https://github.com/typeclasses/assoc-list/issues/2 - assoc-list = dontCheck super.assoc-list; - assoc-listlike = dontCheck super.assoc-listlike; - # https://github.com/typeclasses/dsv/issues/1 - dsv = dontCheck super.dsv; # https://github.com/acid-state/acid-state/issues/133 acid-state = dontCheck super.acid-state; # Otherwise impure gcc is used, which is Apple's weird wrapper - c2hsc = addTestToolDepends super.c2hsc [ pkgs.gcc ]; + c2hsc = addTestToolDepends [ pkgs.gcc ] super.c2hsc; + + # streamly depends on Cocoa starting with 0.8.0 + streamly_0_8_0 = overrideCabal (drv: { + libraryFrameworkDepends = [ + darwin.apple_sdk.frameworks.Cocoa + ] ++ (drv.libraryFrameworkDepends or []); + }) super.streamly_0_8_0; } // lib.optionalAttrs pkgs.stdenv.isAarch64 { # aarch64-darwin diff --git a/pkgs/development/haskell-modules/configuration-ghc-8.10.x.nix b/pkgs/development/haskell-modules/configuration-ghc-8.10.x.nix index 4d0c33208944..d5523fd07cf8 100644 --- a/pkgs/development/haskell-modules/configuration-ghc-8.10.x.nix +++ b/pkgs/development/haskell-modules/configuration-ghc-8.10.x.nix @@ -72,20 +72,20 @@ self: super: { shower = doJailbreak super.shower; # The shipped Setup.hs file is broken. - csv = overrideCabal super.csv (drv: { preCompileBuildDriver = "rm Setup.hs"; }); + csv = overrideCabal (drv: { preCompileBuildDriver = "rm Setup.hs"; }) super.csv; # Apply patch from https://github.com/finnsson/template-helper/issues/12#issuecomment-611795375 to fix the build. - language-haskell-extract = appendPatch (doJailbreak super.language-haskell-extract) (pkgs.fetchpatch { + language-haskell-extract = appendPatch (pkgs.fetchpatch { name = "language-haskell-extract-0.2.4.patch"; url = "https://gitlab.haskell.org/ghc/head.hackage/-/raw/e48738ee1be774507887a90a0d67ad1319456afc/patches/language-haskell-extract-0.2.4.patch?inline=false"; sha256 = "0rgzrq0513nlc1vw7nw4km4bcwn4ivxcgi33jly4a7n3c1r32v1f"; - }); + }) (doJailbreak super.language-haskell-extract); # hnix 0.9.0 does not provide an executable for ghc < 8.10, so define completions here for now. hnix = generateOptparseApplicativeCompletion "hnix" - (overrideCabal super.hnix (drv: { + (overrideCabal (drv: { # executable is allowed for ghc >= 8.10 and needs repline executableHaskellDepends = drv.executableToolDepends or [] ++ [ self.repline ]; - })); + }) super.hnix); } diff --git a/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix b/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix index 99b53b9f14f3..72df46f393e5 100644 --- a/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix +++ b/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix @@ -90,13 +90,13 @@ self: super: { haddock-library_1_7_0 = dontCheck super.haddock-library_1_7_0; # ghc versions prior to 8.8.x needs additional dependency to compile successfully. - ghc-lib-parser-ex = addBuildDepend super.ghc-lib-parser-ex self.ghc-lib-parser; + ghc-lib-parser-ex = addBuildDepend self.ghc-lib-parser super.ghc-lib-parser-ex; # This became a core library in ghc 8.10., so we don‘t have an "exception" attribute anymore. exceptions = super.exceptions_0_10_4; # Older compilers need the latest ghc-lib to build this package. - hls-hlint-plugin = addBuildDepend super.hls-hlint-plugin self.ghc-lib; + hls-hlint-plugin = addBuildDepend self.ghc-lib super.hls-hlint-plugin; # vector 0.12.2 indroduced doctest checks that don‘t work on older compilers vector = dontCheck super.vector; diff --git a/pkgs/development/haskell-modules/configuration-ghc-8.8.x.nix b/pkgs/development/haskell-modules/configuration-ghc-8.8.x.nix index 25d8e44b4545..db7ae186b80f 100644 --- a/pkgs/development/haskell-modules/configuration-ghc-8.8.x.nix +++ b/pkgs/development/haskell-modules/configuration-ghc-8.8.x.nix @@ -85,10 +85,10 @@ self: super: { vault = dontHaddock super.vault; # https://github.com/snapframework/snap-core/issues/288 - snap-core = overrideCabal super.snap-core (drv: { prePatch = "substituteInPlace src/Snap/Internal/Core.hs --replace 'fail = Fail.fail' ''"; }); + snap-core = overrideCabal (drv: { prePatch = "substituteInPlace src/Snap/Internal/Core.hs --replace 'fail = Fail.fail' ''"; }) super.snap-core; # Upstream ships a broken Setup.hs file. - csv = overrideCabal super.csv (drv: { prePatch = "rm Setup.hs"; }); + csv = overrideCabal (drv: { prePatch = "rm Setup.hs"; }) super.csv; # https://github.com/kowainik/relude/issues/241 relude = dontCheck super.relude; @@ -120,10 +120,10 @@ self: super: { # ghc versions which don‘t match the ghc-lib-parser-ex version need the # additional dependency to compile successfully. - ghc-lib-parser-ex = addBuildDepend super.ghc-lib-parser-ex self.ghc-lib-parser; + ghc-lib-parser-ex = addBuildDepend self.ghc-lib-parser super.ghc-lib-parser-ex; # Older compilers need the latest ghc-lib to build this package. - hls-hlint-plugin = addBuildDepend super.hls-hlint-plugin self.ghc-lib; + hls-hlint-plugin = addBuildDepend self.ghc-lib super.hls-hlint-plugin; # vector 0.12.2 indroduced doctest checks that don‘t work on older compilers vector = dontCheck super.vector; diff --git a/pkgs/development/haskell-modules/configuration-ghc-9.0.x.nix b/pkgs/development/haskell-modules/configuration-ghc-9.0.x.nix index bd0526e35f4c..b461b45af02d 100644 --- a/pkgs/development/haskell-modules/configuration-ghc-9.0.x.nix +++ b/pkgs/development/haskell-modules/configuration-ghc-9.0.x.nix @@ -55,10 +55,10 @@ self: super: { dec = doJailbreak super.dec; ed25519 = doJailbreak super.ed25519; hackage-security = doJailbreak super.hackage-security; - hashable = overrideCabal (doJailbreak (dontCheck super.hashable)) (drv: { postPatch = "sed -i -e 's,integer-gmp .*<1.1,integer-gmp < 2,' hashable.cabal"; }); + hashable = overrideCabal (drv: { postPatch = "sed -i -e 's,integer-gmp .*<1.1,integer-gmp < 2,' hashable.cabal"; }) (doJailbreak (dontCheck super.hashable)); hashable-time = doJailbreak super.hashable-time; - HTTP = overrideCabal (doJailbreak super.HTTP) (drv: { postPatch = "sed -i -e 's,! Socket,!Socket,' Network/TCP.hs"; }); - integer-logarithms = overrideCabal (doJailbreak super.integer-logarithms) (drv: { postPatch = "sed -i -e 's,integer-gmp <1.1,integer-gmp < 2,' integer-logarithms.cabal"; }); + HTTP = overrideCabal (drv: { postPatch = "sed -i -e 's,! Socket,!Socket,' Network/TCP.hs"; }) (doJailbreak super.HTTP); + integer-logarithms = overrideCabal (drv: { postPatch = "sed -i -e 's,integer-gmp <1.1,integer-gmp < 2,' integer-logarithms.cabal"; }) (doJailbreak super.integer-logarithms); lukko = doJailbreak super.lukko; parallel = doJailbreak super.parallel; primitive = doJailbreak (dontCheck super.primitive); @@ -75,8 +75,9 @@ self: super: { weeder = self.weeder_2_3_0; generic-lens-core = self.generic-lens-core_2_2_0_0; generic-lens = self.generic-lens_2_2_0_0; - th-desugar = self.th-desugar_1_12; - autoapply = self.autoapply_0_4_1_1; + th-desugar = self.th-desugar_1_13; + # 2021-11-08: Fixed in autoapply-0.4.2 + autoapply = doJailbreak self.autoapply_0_4_1_1; # Doesn't allow Dhall 1.39.* weeder_2_3_0 = super.weeder_2_3_0.override { @@ -87,15 +88,15 @@ self: super: { generic-lens_2_2_0_0 = dontCheck super.generic-lens_2_2_0_0; # Apply patches from head.hackage. - alex = appendPatch (dontCheck super.alex) (pkgs.fetchpatch { + alex = appendPatch (pkgs.fetchpatch { url = "https://gitlab.haskell.org/ghc/head.hackage/-/raw/fe192e12b88b09499d4aff0e562713e820544bd6/patches/alex-3.2.6.patch"; sha256 = "1rzs764a0nhx002v4fadbys98s6qblw4kx4g46galzjf5f7n2dn4"; - }); + }) (dontCheck super.alex); doctest = dontCheck (doJailbreak super.doctest_0_18_1); - language-haskell-extract = appendPatch (doJailbreak super.language-haskell-extract) (pkgs.fetchpatch { + language-haskell-extract = appendPatch (pkgs.fetchpatch { url = "https://gitlab.haskell.org/ghc/head.hackage/-/raw/master/patches/language-haskell-extract-0.2.4.patch"; sha256 = "0rgzrq0513nlc1vw7nw4km4bcwn4ivxcgi33jly4a7n3c1r32v1f"; - }); + }) (doJailbreak super.language-haskell-extract); # The test suite depends on ChasingBottoms, which is broken with ghc-9.0.x. unordered-containers = dontCheck super.unordered-containers; @@ -127,19 +128,19 @@ self: super: { ghc-lib = self.ghc-lib_9_0_1_20210324; # 2021-09-18: Need semialign >= 1.2 for correct bounds - semialign = super.semialign_1_2; + semialign = super.semialign_1_2_0_1; # Will probably be needed for brittany support # https://github.com/lspitzner/czipwith/pull/2 - #czipwith = appendPatch super.czipwith + #czipwith = appendPatch # (pkgs.fetchpatch { # url = "https://github.com/lspitzner/czipwith/commit/b6245884ae83e00dd2b5261762549b37390179f8.patch"; # sha256 = "08rpppdldsdwzb09fmn0j55l23pwyls2dyzziw3yjc1cm0j5vic5"; - # }); + # }) super.czipwith; # 2021-09-18: https://github.com/mokus0/th-extras/pull/8 # Release is missing, but asked for in the above PR. - th-extras = overrideCabal super.th-extras (old: { + th-extras = overrideCabal (old: { version = assert old.version == "0.0.0.4"; "unstable-2021-09-18"; src = pkgs.fetchFromGitHub { owner = "mokus0"; @@ -148,22 +149,22 @@ self: super: { sha256 = "045f36yagrigrggvyb96zqmw8y42qjsllhhx2h20q25sk5h44xsd"; }; libraryHaskellDepends = old.libraryHaskellDepends ++ [self.th-abstraction]; - }); + }) super.th-extras; # 2021-09-18: GHC 9 compat release is missing # Issue: https://github.com/obsidiansystems/dependent-sum/issues/65 - dependent-sum-template = dontCheck (appendPatch super.dependent-sum-template + dependent-sum-template = dontCheck (appendPatch (pkgs.fetchpatch { url = "https://github.com/obsidiansystems/dependent-sum/commit/8cf4c7fbc3bfa2be475a17bb7c94a1e1e9a830b5.patch"; sha256 = "02wyy0ciicq2x8lw4xxz3x5i4a550mxfidhm2ihh60ni6am498ff"; stripLen = 2; extraPrefix = ""; - })); + }) super.dependent-sum-template); # 2021-09-18: cabal2nix does not detect the need for ghc-api-compat. - hiedb = overrideCabal super.hiedb (old: { + hiedb = overrideCabal (old: { libraryHaskellDepends = old.libraryHaskellDepends ++ [self.ghc-api-compat]; - }); + }) super.hiedb; # 2021-09-18: Need path >= 0.9.0 for ghc 9 compat path = self.path_0_9_0; @@ -174,16 +175,7 @@ self: super: { hls-ormolu-plugin = doJailbreak super.hls-ormolu-plugin; # 2021-09-18: The following plugins don‘t work yet on ghc9. - haskell-language-server = appendConfigureFlags (super.haskell-language-server.override { - hls-tactics-plugin = null; # No upstream support, generic-lens-core fail - hls-splice-plugin = null; # No upstream support in hls 1.4.0, should be fixed in 1.5 - hls-refine-imports-plugin = null; # same issue es splice-plugin - hls-class-plugin = null; # No upstream support - - hls-fourmolu-plugin = null; # No upstream support, needs new fourmolu release - hls-stylish-haskell-plugin = null; # No upstream support - hls-brittany-plugin = null; # No upstream support, needs new brittany release - }) [ + haskell-language-server = appendConfigureFlags [ "-f-tactic" "-f-splice" "-f-refineimports" @@ -192,5 +184,14 @@ self: super: { "-f-fourmolu" "-f-brittany" "-f-stylishhaskell" - ]; + ] (super.haskell-language-server.override { + hls-tactics-plugin = null; # No upstream support, generic-lens-core fail + hls-splice-plugin = null; # No upstream support in hls 1.4.0, should be fixed in 1.5 + hls-refine-imports-plugin = null; # same issue es splice-plugin + hls-class-plugin = null; # No upstream support + + hls-fourmolu-plugin = null; # No upstream support, needs new fourmolu release + hls-stylish-haskell-plugin = null; # No upstream support + hls-brittany-plugin = null; # No upstream support, needs new brittany release + }); } diff --git a/pkgs/development/haskell-modules/configuration-ghc-9.2.x.nix b/pkgs/development/haskell-modules/configuration-ghc-9.2.x.nix index 29c0716b093b..ffe7f0868cf0 100644 --- a/pkgs/development/haskell-modules/configuration-ghc-9.2.x.nix +++ b/pkgs/development/haskell-modules/configuration-ghc-9.2.x.nix @@ -43,73 +43,51 @@ self: super: { unix = null; xhtml = null; - aeson = appendPatch (doJailbreak super.aeson) (pkgs.fetchpatch { + # Workaround for https://gitlab.haskell.org/ghc/ghc/-/issues/20594 + tf-random = overrideCabal { + doHaddock = !pkgs.stdenv.isAarch64; + } super.tf-random; + + aeson = appendPatch (pkgs.fetchpatch { url = "https://gitlab.haskell.org/ghc/head.hackage/-/raw/dfd024c9a336c752288ec35879017a43bd7e85a0/patches/aeson-1.5.6.0.patch"; sha256 = "07rk7f0lhgilxvbg2grpl1p5x25wjf9m7a0wqmi2jr0q61p9a0nl"; # The revision information is newer than that included in the patch excludes = ["*.cabal"]; - }); + }) (doJailbreak super.aeson); - attoparsec = appendPatch (doJailbreak super.attoparsec_0_14_1) (pkgs.fetchpatch { - url = "https://gitlab.haskell.org/ghc/head.hackage/-/raw/dfd024c9a336c752288ec35879017a43bd7e85a0/patches/attoparsec-0.14.1.patch"; - sha256 = "0nprywmi3i9ih8mcc8afyimrfjr8pbcjxr2ywz9gwdlwdplk21da"; - }); + # Tests use Data.Semigroup.Option + aeson_2_0_1_0 = dontCheck (doJailbreak super.aeson_2_0_1_0); - # 0.12.0 introduces support for 9.2 - base-compat = self.base-compat_0_12_0; - base-compat-batteries = self.base-compat-batteries_0_12_0; - - basement = overrideCabal (appendPatch super.basement (pkgs.fetchpatch { - url = "https://gitlab.haskell.org/ghc/head.hackage/-/raw/dfd024c9a336c752288ec35879017a43bd7e85a0/patches/basement-0.0.12.patch"; - sha256 = "0c8n2krz827cv87p3vb1vpl3v0k255aysjx9lq44gz3z1dhxd64z"; - })) (drv: { + basement = overrideCabal (drv: { # This is inside a conditional block so `doJailbreak` doesn't work postPatch = "sed -i -e 's,<4.16,<4.17,' basement.cabal"; - }); + }) (appendPatch (pkgs.fetchpatch { + url = "https://gitlab.haskell.org/ghc/head.hackage/-/raw/dfd024c9a336c752288ec35879017a43bd7e85a0/patches/basement-0.0.12.patch"; + sha256 = "0c8n2krz827cv87p3vb1vpl3v0k255aysjx9lq44gz3z1dhxd64z"; + }) super.basement); - base16-bytestring = appendPatch super.base16-bytestring (pkgs.fetchpatch { - url = "https://gitlab.haskell.org/ghc/head.hackage/-/raw/dfd024c9a336c752288ec35879017a43bd7e85a0/patches/base16-bytestring-1.0.1.0.patch"; - sha256 = "19ajai9y04981zfpcdj1nlz44b12gjj4m1ncciijv43mnz82plji"; - }); - - # Duplicate Show instances in tests and library cause compiling tests to fail - blaze-builder = appendPatch (dontCheck super.blaze-builder) (pkgs.fetchpatch { - url = "https://gitlab.haskell.org/ghc/head.hackage/-/raw/dfd024c9a336c752288ec35879017a43bd7e85a0/patches/blaze-builder-0.4.2.1.patch"; - sha256 = "1h5ny3mlng69vwaabl3af8hlv4qi24wfw8s14lw2ksw1yjbgi0j8"; - }); - - cereal = appendPatch (doJailbreak super.cereal) (pkgs.fetchpatch { + cereal = appendPatch (pkgs.fetchpatch { url = "https://gitlab.haskell.org/ghc/head.hackage/-/raw/dfd024c9a336c752288ec35879017a43bd7e85a0/patches/cereal-0.5.8.1.patch"; sha256 = "03v4nxwz9y6viaa8anxcmp4zdf2clczv4pf9fqq6lnpplpz5i128"; - }); + }) (doJailbreak super.cereal); # Tests fail because of typechecking changes conduit = dontCheck super.conduit; - constraints = appendPatch (doJailbreak super.constraints) (pkgs.fetchpatch { - url = "https://gitlab.haskell.org/ghc/head.hackage/-/raw/dfd024c9a336c752288ec35879017a43bd7e85a0/patches/constraints-0.13.patch"; - sha256 = "0cr4qzw0fbwy97f3wx0v3mv8yc642ahpfa80kaqrq191232fzzf3"; - }); - - cryptonite = appendPatch super.cryptonite (pkgs.fetchpatch { + cryptonite = appendPatch (pkgs.fetchpatch { url = "https://gitlab.haskell.org/ghc/head.hackage/-/raw/dfd024c9a336c752288ec35879017a43bd7e85a0/patches/cryptonite-0.29.patch"; sha256 = "1g48lrmqgd88hqvfq3klz7lsrpwrir2v1931myrhh6dy0d9pqj09"; - }); + }) super.cryptonite; # cabal-install needs more recent versions of Cabal cabal-install = (doJailbreak super.cabal-install).overrideScope (self: super: { Cabal = self.Cabal_3_6_2_0; }); - doctest = appendPatch (dontCheck (doJailbreak super.doctest_0_18_1)) (pkgs.fetchpatch { + doctest = appendPatch (pkgs.fetchpatch { url = "https://gitlab.haskell.org/ghc/head.hackage/-/raw/dfd024c9a336c752288ec35879017a43bd7e85a0/patches/doctest-0.18.1.patch"; sha256 = "030kdsk0fg08cgdcjpyv6z8ym1vkkrbd34aacs91y5hqzc9g79y1"; - }); - - entropy = appendPatch super.entropy (pkgs.fetchpatch { - url = "https://gitlab.haskell.org/ghc/head.hackage/-/raw/dfd024c9a336c752288ec35879017a43bd7e85a0/patches/entropy-0.4.1.6.patch"; - sha256 = "0pbbl6m8b3snf9cz6rs0ljmacpsavayfn0s3p67hdcmndy3ndawi"; - }); + }) (dontCheck (doJailbreak super.doctest_0_18_1)); # Tests fail in GHC 9.2 extra = dontCheck super.extra; @@ -117,99 +95,95 @@ self: super: { # Jailbreaks & Version Updates assoc = doJailbreak super.assoc; async = doJailbreak super.async; + attoparsec = super.attoparsec_0_14_2; base64-bytestring = doJailbreak super.base64-bytestring; + base-compat = self.base-compat_0_12_1; + base-compat-batteries = self.base-compat-batteries_0_12_1; + binary-instances = doJailbreak super.binary-instances; + binary-orphans = super.binary-orphans_1_0_2; ChasingBottoms = doJailbreak super.ChasingBottoms; - cpphs = overrideCabal super.cpphs (drv: { postPatch = "sed -i -e 's,time >=1.5 && <1.11,time >=1.5 \\&\\& <1.12,' cpphs.cabal";}); + constraints = doJailbreak super.constraints; + cpphs = overrideCabal (drv: { postPatch = "sed -i -e 's,time >=1.5 && <1.11,time >=1.5 \\&\\& <1.12,' cpphs.cabal";}) super.cpphs; cryptohash-md5 = doJailbreak super.cryptohash-md5; cryptohash-sha1 = doJailbreak super.cryptohash-sha1; data-fix = doJailbreak super.data-fix; dec = doJailbreak super.dec; ed25519 = doJailbreak super.ed25519; ghc-byteorder = doJailbreak super.ghc-byteorder; + ghc-lib = self.ghc-lib_9_2_1_20211101; + ghc-lib-parser = self.ghc-lib-parser_9_2_1_20211101; + ghc-lib-parser-ex = self.ghc-lib-parser-ex_9_2_0_1; hackage-security = doJailbreak super.hackage-security; + hashable = super.hashable_1_4_0_0; hashable-time = doJailbreak super.hashable-time; - HTTP = overrideCabal (doJailbreak super.HTTP) (drv: { postPatch = "sed -i -e 's,! Socket,!Socket,' Network/TCP.hs"; }); - integer-logarithms = overrideCabal (doJailbreak super.integer-logarithms) (drv: { postPatch = "sed -i -e 's, <1.1, <1.3,' integer-logarithms.cabal"; }); + hedgehog = doJailbreak super.hedgehog; + HTTP = overrideCabal (drv: { postPatch = "sed -i -e 's,! Socket,!Socket,' Network/TCP.hs"; }) (doJailbreak super.HTTP); + integer-logarithms = overrideCabal (drv: { postPatch = "sed -i -e 's, <1.1, <1.3,' integer-logarithms.cabal"; }) (doJailbreak super.integer-logarithms); indexed-traversable = doJailbreak super.indexed-traversable; + indexed-traversable-instances = doJailbreak super.indexed-traversable-instances; lifted-async = doJailbreak super.lifted-async; lukko = doJailbreak super.lukko; network = super.network_3_1_2_5; + OneTuple = super.OneTuple_0_3_1; parallel = doJailbreak super.parallel; - polyparse = overrideCabal (doJailbreak super.polyparse) (drv: { postPatch = "sed -i -e 's, <0.11, <0.12,' polyparse.cabal"; }); + polyparse = overrideCabal (drv: { postPatch = "sed -i -e 's, <0.11, <0.12,' polyparse.cabal"; }) (doJailbreak super.polyparse); primitive = doJailbreak super.primitive; + quickcheck-instances = super.quickcheck-instances_0_3_26_1; regex-posix = doJailbreak super.regex-posix; resolv = doJailbreak super.resolv; + semialign = super.semialign_1_2_0_1; singleton-bool = doJailbreak super.singleton-bool; scientific = doJailbreak super.scientific; shelly = doJailbreak super.shelly; split = doJailbreak super.split; splitmix = doJailbreak super.splitmix; tar = doJailbreak super.tar; + tasty-hedgehog = doJailbreak super.tasty-hedgehog; + tasty-hspec = doJailbreak super.tasty-hspec; + th-desugar = self.th-desugar_1_13; these = doJailbreak super.these; time-compat = doJailbreak super.time-compat; type-equality = doJailbreak super.type-equality; + unordered-containers = doJailbreak super.unordered-containers; vector = doJailbreak (dontCheck super.vector); vector-binary-instances = doJailbreak super.vector-binary-instances; + # Upper bound on `hashable` is too restrictive + witherable = doJailbreak super.witherable; zlib = doJailbreak super.zlib; - indexed-traversable-instances = doJailbreak super.indexed-traversable-instances; - hpack = overrideCabal (doJailbreak super.hpack) (drv: { + hpack = overrideCabal (drv: { # Cabal 3.6 seems to preserve comments when reading, which makes this test fail # 2021-10-10: 9.2.1 is not yet supported (also no issue) testFlags = [ "--skip=/Hpack/renderCabalFile/is inverse to readCabalFile/" ] ++ drv.testFlags or []; - }); + }) (doJailbreak super.hpack); # Patch for TH code from head.hackage - vector-th-unbox = appendPatch (doJailbreak super.vector-th-unbox) (pkgs.fetchpatch { + vector-th-unbox = appendPatch (pkgs.fetchpatch { url = "https://gitlab.haskell.org/ghc/head.hackage/-/raw/dfd024c9a336c752288ec35879017a43bd7e85a0/patches/vector-th-unbox-0.2.1.9.patch"; sha256 = "02bvvy3hx3cf4y4dr64zl5pjvq8giwk4286j5g1n6k8ikyn2403p"; - }); - - # Patch for TH code from head.hackage - invariant = appendPatch (doJailbreak super.invariant) (pkgs.fetchpatch { - url = "https://gitlab.haskell.org/ghc/head.hackage/-/raw/dfd024c9a336c752288ec35879017a43bd7e85a0/patches/invariant-0.5.4.patch"; - sha256 = "17gg8ck4r6qmlbcbpbnqzksgf5q7i891zs6axfzhas6ajncylxvc"; - }); + }) (doJailbreak super.vector-th-unbox); # base 4.15 support from head.hackage - lens = appendPatch (doJailbreak super.lens_5_0_1) (pkgs.fetchpatch { + lens = appendPatch (pkgs.fetchpatch { url = "https://gitlab.haskell.org/ghc/head.hackage/-/raw/dfd024c9a336c752288ec35879017a43bd7e85a0/patches/lens-5.0.1.patch"; sha256 = "1s8qqg7ymvv94dnfnr1ragx91chh9y7ydc4jx25zn361wbn00pv7"; - }); - - semigroupoids = overrideCabal super.semigroupoids (drv: { - # Patch from head.hackage for base 4.15 compat - patches = drv.patches or [] ++ [ - (pkgs.fetchpatch { - url = "https://gitlab.haskell.org/ghc/head.hackage/-/raw/dfd024c9a336c752288ec35879017a43bd7e85a0/patches/semigroupoids-5.3.5.patch"; - sha256 = "0xrn1gv6b2n76522pk2nfp4z69kvp14l2zpif2f8zzz6cwcrx9w8"; - }) - ]; - # acrobatics to make the patch apply - prePatch = '' - find . -type f | xargs -L 1 ${pkgs.buildPackages.dos2unix}/bin/dos2unix - ''; - editedCabalFile = null; - revision = null; - }); + }) (doJailbreak super.lens_5_0_1); # Syntax error in tests fixed in https://github.com/simonmar/alex/commit/84b29475e057ef744f32a94bc0d3954b84160760 alex = dontCheck super.alex; # Apply patches from head.hackage. - language-haskell-extract = appendPatch (doJailbreak super.language-haskell-extract) (pkgs.fetchpatch { + language-haskell-extract = appendPatch (pkgs.fetchpatch { url = "https://gitlab.haskell.org/ghc/head.hackage/-/raw/dfd024c9a336c752288ec35879017a43bd7e85a0/patches/language-haskell-extract-0.2.4.patch"; sha256 = "0w4y3v69nd3yafpml4gr23l94bdhbmx8xky48a59lckmz5x9fgxv"; - }); + }) (doJailbreak super.language-haskell-extract); - hashable = super.hashable_1_3_4_1; - - haskell-src-meta = appendPatch (doJailbreak super.haskell-src-meta) (pkgs.fetchpatch { + haskell-src-meta = appendPatch (pkgs.fetchpatch { url = "https://gitlab.haskell.org/ghc/head.hackage/-/raw/dfd024c9a336c752288ec35879017a43bd7e85a0/patches/haskell-src-meta-0.8.7.patch"; sha256 = "013k8hpxac226j47cdzgdf9a1j91kmm0cvv7n8zwlajbj3y9bzjp"; - }); + }) (doJailbreak super.haskell-src-meta); # Tests depend on `parseTime` which is no longer available hourglass = dontCheck super.hourglass; @@ -219,38 +193,33 @@ self: super: { random = dontCheck super.random_1_2_1; # 0.16.0 introduced support for GHC 9.0.x, stackage has 0.15.0 - memory = appendPatch super.memory_0_16_0 (pkgs.fetchpatch { + memory = appendPatch (pkgs.fetchpatch { url = "https://gitlab.haskell.org/ghc/head.hackage/-/raw/dfd024c9a336c752288ec35879017a43bd7e85a0/patches/memory-0.16.0.patch"; sha256 = "1kjganx729a6xfgfnrb3z7q6mvnidl042zrsd9n5n5a3i76nl5nl"; - }); + }) super.memory_0_16_0; # GHC 9.0.x doesn't like `import Spec (main)` in Main.hs # https://github.com/snoyberg/mono-traversable/issues/192 mono-traversable = dontCheck super.mono-traversable; - quickcheck-instances = appendPatch (doJailbreak super.quickcheck-instances) (pkgs.fetchpatch { - url = "https://gitlab.haskell.org/ghc/head.hackage/-/raw/dfd024c9a336c752288ec35879017a43bd7e85a0/patches/quickcheck-instances-0.3.25.2.patch"; - sha256 = "0ndnb6wbnhxxwy69jjdpmd7gmmv6asmx1jczwz1hsn921mn1ilnp"; - # `.cabal` revision information has been included in the patch - excludes = ["*.cabal"]; - }); - # Disable tests pending resolution of # https://github.com/Soostone/retry/issues/71 retry = dontCheck super.retry; - # Disable tests pending resolution of - # https://github.com/haskell/text/issues/380 or https://github.com/fpco/streaming-commons/issues/60 - streaming-commons = dontCheck (appendPatch super.streaming-commons (pkgs.fetchpatch { + # Upper bound on `hashable` is too restrictive + semigroupoids = overrideCabal (drv: { postPatch = "sed -i -e 's,hashable >= 1.2.7.0 && < 1.4,hashable >= 1.2.7.0 \\&\\& < 1.5,' semigroupoids.cabal";}) super.semigroupoids; + + streaming-commons = appendPatch (pkgs.fetchpatch { url = "https://gitlab.haskell.org/ghc/head.hackage/-/raw/dfd024c9a336c752288ec35879017a43bd7e85a0/patches/streaming-commons-0.2.2.1.patch"; sha256 = "04wi1jskr3j8ayh88kkx4irvhhgz0i7aj6fblzijy0fygikvidpy"; - })); + }) super.streaming-commons; + + # Tests have a circular dependency on quickcheck-instances + text-short = dontCheck super.text-short_0_1_4; # hlint 3.3 needs a ghc-lib-parser newer than the one from stackage hlint = super.hlint_3_3_4.overrideScope (self: super: { - ghc-lib-parser = overrideCabal self.ghc-lib-parser_9_0_1_20210324 { - doHaddock = false; - }; - ghc-lib-parser-ex = self.ghc-lib-parser-ex_9_0_0_4; + ghc-lib-parser = self.ghc-lib-parser_9_2_1_20211101; + ghc-lib-parser-ex = self.ghc-lib-parser-ex_9_2_0_1; }); } diff --git a/pkgs/development/haskell-modules/configuration-ghc-head.nix b/pkgs/development/haskell-modules/configuration-ghc-head.nix index ca455a7c8929..562a8fb44ba6 100644 --- a/pkgs/development/haskell-modules/configuration-ghc-head.nix +++ b/pkgs/development/haskell-modules/configuration-ghc-head.nix @@ -75,6 +75,6 @@ self: super: { stack = doJailbreak super.stack; # Fix build with ghc 8.6.x. - git-annex = appendPatch super.git-annex ./patches/git-annex-fix-ghc-8.6.x-build.patch; + git-annex = appendPatch ./patches/git-annex-fix-ghc-8.6.x-build.patch super.git-annex; } diff --git a/pkgs/development/haskell-modules/configuration-ghcjs.nix b/pkgs/development/haskell-modules/configuration-ghcjs.nix index d4e443d6beaf..87f83182ea00 100644 --- a/pkgs/development/haskell-modules/configuration-ghcjs.nix +++ b/pkgs/development/haskell-modules/configuration-ghcjs.nix @@ -38,17 +38,17 @@ self: super: # doctest doesn't work on ghcjs, but sometimes dontCheck doesn't seem to get rid of the dependency doctest = pkgs.lib.warn "ignoring dependency on doctest" null; - ghcjs-dom = overrideCabal super.ghcjs-dom (drv: { + ghcjs-dom = overrideCabal (drv: { libraryHaskellDepends = with self; [ ghcjs-base ghcjs-dom-jsffi text transformers ]; configureFlags = [ "-fjsffi" "-f-webkit" ]; - }); + }) super.ghcjs-dom; - ghcjs-dom-jsffi = overrideCabal super.ghcjs-dom-jsffi (drv: { + ghcjs-dom-jsffi = overrideCabal (drv: { libraryHaskellDepends = (drv.libraryHaskellDepends or []) ++ [ self.ghcjs-base self.text ]; broken = false; - }); + }) super.ghcjs-dom-jsffi; # https://github.com/Deewiant/glob/issues/39 Glob = dontCheck super.Glob; @@ -59,9 +59,9 @@ self: super: # uses doctest http-types = dontCheck super.http-types; - jsaddle = overrideCabal super.jsaddle (drv: { + jsaddle = overrideCabal (drv: { libraryHaskellDepends = (drv.libraryHaskellDepends or []) ++ [ self.ghcjs-base ]; - }); + }) super.jsaddle; # Tests hang, possibly some issue with tasty and race(async) usage in the nonTerminating tests logict = dontCheck super.logict; @@ -74,13 +74,13 @@ self: super: # Terminal test not supported on ghcjs QuickCheck = dontCheck super.QuickCheck; - reflex = overrideCabal super.reflex (drv: { + reflex = overrideCabal (drv: { libraryHaskellDepends = (drv.libraryHaskellDepends or []) ++ [ self.ghcjs-base ]; - }); + }) super.reflex; - reflex-dom = overrideCabal super.reflex-dom (drv: { + reflex-dom = overrideCabal (drv: { libraryHaskellDepends = removeLibraryHaskellDepends ["jsaddle-webkit2gtk"] (drv.libraryHaskellDepends or []); - }); + }) super.reflex-dom; # https://github.com/dreixel/syb/issues/21 syb = dontCheck super.syb; @@ -102,7 +102,7 @@ self: super: th-abstraction = dontCheck super.th-abstraction; # https://github.com/haskell/vector/issues/410 - vector = appendPatch super.vector (../compilers/ghcjs/patches/vector-ghcjs-storable-set.patch) ; + vector = appendPatch super.vector (../compilers/ghcjs/patches/vector-ghcjs-storable-set.patch); # Need hedgehog for tests, which fails to compile due to dep on concurrent-output zenc = dontCheck super.zenc; diff --git a/pkgs/development/haskell-modules/configuration-hackage2nix/broken.yaml b/pkgs/development/haskell-modules/configuration-hackage2nix/broken.yaml index ff2210d031ed..34592e29dd6b 100644 --- a/pkgs/development/haskell-modules/configuration-hackage2nix/broken.yaml +++ b/pkgs/development/haskell-modules/configuration-hackage2nix/broken.yaml @@ -88,7 +88,6 @@ broken-packages: - aeson-tiled - aeson-typescript - aeson-utils - - aeson-via - affection - affine-invariant-ensemble-mcmc - Agata @@ -101,6 +100,7 @@ broken-packages: - AhoCorasick - aig - airbrake + - airship - airtable-api - air-th - ajhc @@ -128,6 +128,7 @@ broken-packages: - alure - amazon-emailer - amazonka-contrib-rds-utils + - amazonka-mediaconvert - amazonka-s3-streaming - amazon-products - amby @@ -499,7 +500,6 @@ broken-packages: - bytestring-show - bytestring-substring - bytestring-time - - bytestring-trie - bytestring-typenats - c0parser - c10k @@ -619,6 +619,7 @@ broken-packages: - cg - cgen - cgi-utils + - cgroup-rts-threads - chalkboard - chalmers-lava2000 - character-cases @@ -746,6 +747,7 @@ broken-packages: - compact-list - compact-map - compact-mutable-vector + - compact-sequences - compact-socket - compact-string - compact-string-fix @@ -841,6 +843,7 @@ broken-packages: - CoreErlang - core-haskell - corenlp-parser + - core-telemetry - Coroutine - coroutine-object - CouchDB @@ -1051,7 +1054,6 @@ broken-packages: - dia-base - diagrams-boolean - diagrams-builder - - diagrams-canvas - diagrams-graphviz - diagrams-gtk - diagrams-pdf @@ -1299,6 +1301,7 @@ broken-packages: - event-driven - eventful-dynamodb - eventful-sql-common + - eventlog2html - eventloop - eventstore - ewe @@ -1330,6 +1333,7 @@ broken-packages: - expresso - extcore - extended-categories + - extensible - extensible-effects-concurrent - extensible-skeleton - external-sort @@ -1716,6 +1720,7 @@ broken-packages: - goal-core - gochan - godot-haskell + - godot-megaparsec - gofer-prelude - gogol-admin-emailmigration - gogol-affiliates @@ -1836,6 +1841,7 @@ broken-packages: - haddock-cheatsheet - haddock-leksah - haddock-test + - hadolint - hadoop-formats - hadoop-rpc - hafar @@ -1921,6 +1927,7 @@ broken-packages: - hashable-orphans - hashabler - hashed-storage + - hashes - hashring - hashtables-plus - hasim @@ -2339,6 +2346,8 @@ broken-packages: - hslogger-reader - hslogger-template - hs-logo + - hslua-examples + - hslua-module-version - hsluv-haskell - hsmagick - hsmodetweaks @@ -2470,7 +2479,6 @@ broken-packages: - hw-json-simd - hw-mquery - hworker - - hw-prim-bits - hw-simd - hwsl2 - hx @@ -2501,6 +2509,7 @@ broken-packages: - IcoGrid - iconv-typed - ideas + - ide-backend-common - idempotent - identifiers - idiii @@ -2641,6 +2650,7 @@ broken-packages: - join-api - joinlist - jonathanscard + - jordan - jort - jpeg - jsaddle-hello @@ -2650,6 +2660,7 @@ broken-packages: - json-alt - json-assertions - json-ast-quickcheck + - JSONb - json-builder - json-encoder - jsonextfilter @@ -2738,7 +2749,10 @@ broken-packages: - lambda-bridge - lambda-canvas - lambdacms-core + - lambdacube-core + - lambdacube-engine - lambdacube-ir + - LambdaDesigner - Lambdajudge - LambdaNet - lambdatex @@ -2776,7 +2790,7 @@ broken-packages: - language-typescript - language-vhdl - language-webidl - - lapack-ffi + - lapack - LargeCardinalHierarchy - Lastik - latest-npm-version @@ -2845,6 +2859,7 @@ broken-packages: - libtagc - libxls - libxslt + - libyaml-streamly - lie - life-sync - lifted-protolude @@ -3193,6 +3208,7 @@ broken-packages: - morphisms-functors - morphisms-objects - morte + - mortred - moto-postgresql - motor-reflection - mount @@ -3656,6 +3672,7 @@ broken-packages: - persistent-mongoDB - persistent-mysql-haskell - persistent-odbc + - persistent-postgresql-streaming - persistent-protobuf - persistent-ratelimit - persistent-redis @@ -3757,6 +3774,7 @@ broken-packages: - pointful - pointless-haskell - pokemon-go-protobuf-types + - poker-base - poker-eval - pokitdok - polar-configfile @@ -3793,6 +3811,7 @@ broken-packages: - postgres-embedded - PostgreSQL - postgresql-lo-stream + - postgresql-migration - postgresql-named - postgresql-resilient - postgresql-simple-bind @@ -3899,6 +3918,7 @@ broken-packages: - proxy-kindness - proxy-mapping - prune-juice + - psc-ide - pseudo-trie - PTQ - publicsuffixlistcreate @@ -3912,7 +3932,7 @@ broken-packages: - Pup-Events-Server - pure-io - pure-priority-queue - - purescript-cst + - purescript-tsd-gen - pure-zlib - pusher-haskell - pusher-ws @@ -4123,6 +4143,7 @@ broken-packages: - resource-effect - resource-embed - restartable + - rest-rewrite - restyle - resumable-exceptions - rethinkdb @@ -4810,7 +4831,6 @@ broken-packages: - tapioca - TaskMonad - tasty-auto - - tasty-checklist - tasty-fail-fast - tasty-grading-system - tasty-hedgehog-coverage @@ -4827,6 +4847,7 @@ broken-packages: - tds - teams - teeth + - telega - telegram - telegram-api - telegram-bot-simple @@ -4879,6 +4900,7 @@ broken-packages: - text-and-plots - text-ascii - text-containers + - text-display - text-format-heavy - text-generic-pretty - text-icu-normalized @@ -4892,6 +4914,7 @@ broken-packages: - text-register-machine - text-replace - text-time + - text-trie - textual - text-utf8 - text-xml-qq @@ -5318,6 +5341,7 @@ broken-packages: - wavefront-obj - weak-bag - weather-api + - webapi - webapp - WebBits - webby @@ -5456,6 +5480,7 @@ broken-packages: - yall - yam-app - yam-config + - yaml-config - yamlkeysdiff - yaml-pretty-extras - YamlReference @@ -5551,6 +5576,7 @@ broken-packages: - zendesk-api - zenhack-prelude - zeno + - zephyr - zeromq4-clone-pattern - zeromq4-conduit - zeromq4-patterns diff --git a/pkgs/development/haskell-modules/configuration-hackage2nix/main.yaml b/pkgs/development/haskell-modules/configuration-hackage2nix/main.yaml index 4282915cee41..c95eb289f6c5 100644 --- a/pkgs/development/haskell-modules/configuration-hackage2nix/main.yaml +++ b/pkgs/development/haskell-modules/configuration-hackage2nix/main.yaml @@ -72,18 +72,6 @@ default-package-overrides: # gi-gdkx11-4.x requires gtk-4.x, which is still under development and # not yet available in Nixpkgs - gi-gdkx11 < 4 - # 2021-05-11: not all diagrams libraries have adjusted to - # monoid-extras 0.6 yet, keep them pinned to lower versions - # until we can do a full migration, see - # https://github.com/diagrams/diagrams-core/issues/115 - # We can keep this pin at most until base 4.15 - # Since the monoid-extras adjustment was combined with - # a major release in some cases, we need to wait for - # diagrams 1.5 to be released. - - monoid-extras < 0.6 - - dual-tree < 0.2.3.0 - - diagrams-core < 1.5.0 - - diagrams-lib < 1.4.4 # streamly-* packages which are not in stackage and to be constrained # as long as we have streamly < 0.8.0 - streamly-archive < 0.1.0 @@ -106,6 +94,10 @@ default-package-overrides: - autoapply < 0.4.1.1 # 2021-10-22: 1.8 breaks shake-bench - SVGFonts < 1.8 + # 2021-11-09: 0.20.6 can't be built with aeson < 2.0 which is a pain to override at the moment + - futhark < 0.20.6 + # 2021-11-09: ghc-bignum is bundled starting with 9.0.1; only 1.0 builds with GHCs prior to 9.2.1 + - ghc-bignum == 1.0 extra-packages: - base16-bytestring < 1 # required for cabal-install etc. @@ -122,10 +114,10 @@ extra-packages: - haddock == 2.23.* # required on GHC < 8.10.x - haddock-api == 2.23.* # required on GHC < 8.10.x - haddock-library ==1.7.* # required by stylish-cabal-0.5.0.0 - - happy == 1.19.9 # for purescript - happy == 1.19.12 # for ghcjs - hinotify == 0.3.9 # for xmonad-0.26: https://github.com/kolmodin/hinotify/issues/29 - immortal == 0.2.2.1 # required by Hasura 1.3.1, 2020-08-20 + - language-javascript == 0.7.0.0 # required by purescript - mmorph == 1.1.3 # Newest working version of mmorph on ghc 8.6.5. needed for hls - network == 2.6.3.1 # required by pkgs/games/hedgewars/default.nix, 2020-11-15 - optparse-applicative < 0.16 # needed for niv-0.2.19 @@ -135,6 +127,9 @@ extra-packages: - ShellCheck == 0.7.1 # 2021-05-09: haskell-ci 0.12.1 pins this version - cabal-install-parsers == 0.4.2 # 2021-09-04: needed haskell-ci by until it upgrades to Cabal >= 3.6 - ghc-api-compat == 8.6 # 2021-09-07: preserve for GHC 8.8.4 + - ghc-lib == 9.0.1.* # 2021-11-05: Need one GHC 9.0.1 compatible version + - ghc-lib-parser == 9.0.1.* # 2021-11-05: Need one GHC 9.0.1 compatible version + - ghc-lib-parser-ex == 9.0.* # 2021-11-05: Need one GHC 9.0.1 compatible version package-maintainers: abbradar: @@ -153,6 +148,7 @@ package-maintainers: - password - password-instances - pretty-simple + - purenix - spago - termonad dalpd: @@ -414,13 +410,18 @@ unsupported-platforms: gi-dbusmenu: [ x86_64-darwin, aarch64-darwin ] gi-ggit: [ x86_64-darwin, aarch64-darwin ] gi-ibus: [ x86_64-darwin, aarch64-darwin ] + gi-javascriptcore: [ x86_64-darwin, aarch64-darwin ] # webkitgtk marked broken on darwin gi-ostree: [ x86_64-darwin, aarch64-darwin ] gi-vte: [ x86_64-darwin, aarch64-darwin ] + gi-webkit2: [ x86_64-darwin, aarch64-darwin ] # webkitgtk marked broken on darwin + gi-webkit2webextension: [ x86_64-darwin, aarch64-darwin ] # webkitgtk marked broken on darwin gi-wnck: [ x86_64-darwin, aarch64-darwin ] gnome-keyring: [ x86_64-darwin, aarch64-darwin ] gtk-mac-integration: [ i686-linux, x86_64-linux, aarch64-linux, armv7l-linux ] gtk-sni-tray: [ x86_64-darwin, aarch64-darwin ] haskell-snake: [ x86_64-darwin, aarch64-darwin ] + hbro: [ x86_64-darwin, aarch64-darwin ] # webkitgtk marked broken on darwin + hbro-contrib: [ x86_64-darwin, aarch64-darwin ] # webkitgtk marked broken on darwin hcwiid: [ x86_64-darwin, aarch64-darwin ] hevm: [ aarch64-linux ] # depends on sbv, which is not supported on aarch64-linux HFuse: [ x86_64-darwin, aarch64-darwin ] diff --git a/pkgs/development/haskell-modules/configuration-hackage2nix/stackage.yaml b/pkgs/development/haskell-modules/configuration-hackage2nix/stackage.yaml index 5e40f12bcc59..09e2a314977e 100644 --- a/pkgs/development/haskell-modules/configuration-hackage2nix/stackage.yaml +++ b/pkgs/development/haskell-modules/configuration-hackage2nix/stackage.yaml @@ -1,4 +1,4 @@ -# Stackage LTS 18.13 +# Stackage LTS 18.15 # This file is auto-generated by # maintainers/scripts/haskell/update-stackage.sh default-package-overrides: @@ -19,16 +19,16 @@ default-package-overrides: - aeson-casing ==0.2.0.0 - aeson-combinators ==0.0.5.0 - aeson-commit ==1.3 - - aeson-compat ==0.3.9 + - aeson-compat ==0.3.10 - aeson-default ==0.9.1.0 - aeson-diff ==1.1.0.9 - aeson-generic-compat ==0.0.1.3 - aeson-lens ==0.5.0.0 - - aeson-optics ==1.1.0.1 + - aeson-optics ==1.1.1 - aeson-picker ==0.1.0.5 - - aeson-pretty ==0.8.8 - - aeson-qq ==0.8.3 - - aeson-schemas ==1.3.4 + - aeson-pretty ==0.8.9 + - aeson-qq ==0.8.4 + - aeson-schemas ==1.3.5 - aeson-typescript ==0.3.0.1 - aeson-with ==0.1.2.0 - aeson-yak ==0.1.1.3 @@ -42,7 +42,7 @@ default-package-overrides: - alex-meta ==0.3.0.13 - alg ==0.2.13.1 - algebraic-graphs ==0.5 - - Allure ==0.10.2.0 + - Allure ==0.10.3.0 - almost-fix ==0.0.2 - alsa-core ==0.5.0.1 - alsa-mixer ==0.3.0 @@ -140,7 +140,7 @@ default-package-overrides: - amazonka-workspaces ==1.6.1 - amazonka-xray ==1.6.1 - amqp ==0.22.0 - - amqp-utils ==0.6.2.2 + - amqp-utils ==0.6.3.2 - annotated-wl-pprint ==0.7.0 - ansi-terminal ==0.11 - ansi-wl-pprint ==0.6.9 @@ -193,8 +193,8 @@ default-package-overrides: - attoparsec-iso8601 ==1.0.2.0 - attoparsec-path ==0.0.0.1 - audacity ==0.0.2 - - aur ==7.0.6 - - aura ==3.2.6 + - aur ==7.0.7 + - aura ==3.2.5 - authenticate ==1.3.5 - authenticate-oauth ==1.6.0.1 - autoexporter ==1.1.20 @@ -207,8 +207,8 @@ default-package-overrides: - backtracking ==0.1.0 - bank-holidays-england ==0.2.0.6 - barbies ==2.0.3.0 - - base16 ==0.3.0.1 - - base16-bytestring ==1.0.1.0 + - base16 ==0.3.0.2 + - base16-bytestring ==1.0.2.0 - base16-lens ==0.1.3.2 - base32 ==0.2.1.0 - base32-lens ==0.1.1.1 @@ -223,7 +223,7 @@ default-package-overrides: - base-compat ==0.11.2 - base-compat-batteries ==0.11.2 - basement ==0.0.12 - - base-orphans ==0.8.5 + - base-orphans ==0.8.6 - base-prelude ==1.4 - base-unicode-symbols ==0.2.4.2 - basic-prelude ==0.7.0 @@ -235,7 +235,7 @@ default-package-overrides: - bech32 ==1.1.1 - bech32-th ==1.0.2 - bench ==1.0.12 - - benchpress ==0.2.2.17 + - benchpress ==0.2.2.18 - between ==0.11.0.0 - bibtex ==0.1.0.6 - bifunctors ==5.5.11 @@ -246,14 +246,14 @@ default-package-overrides: - binary-conduit ==1.3.1 - binary-ext ==2.0.4 - binary-ieee754 ==0.1.0.0 - - binary-instances ==1.0.1 + - binary-instances ==1.0.2 - binary-list ==1.1.1.2 - binary-orphans ==1.0.1 - binary-parser ==0.5.7 - binary-parsers ==0.2.4.0 - binary-search ==2.0.0 - binary-shared ==0.8.3 - - binary-tagged ==0.3 + - binary-tagged ==0.3.1 - bindings-DSL ==1.0.25 - bindings-GLFW ==3.3.2.0 - bindings-libzip ==1.0.1 @@ -271,7 +271,7 @@ default-package-overrides: - blas-comfort-array ==0.0.0.3 - blas-ffi ==0.1 - blaze-bootstrap ==0.1.0.1 - - blaze-builder ==0.4.2.1 + - blaze-builder ==0.4.2.2 - blaze-html ==0.9.1.2 - blaze-markup ==0.8.2.8 - blaze-svg ==0.3.6.1 @@ -302,11 +302,11 @@ default-package-overrides: - buffer-builder ==0.2.4.7 - buffer-pipe ==0.0 - bugsnag-haskell ==0.0.4.1 - - bugsnag-hs ==0.2.0.4 - - bugzilla-redhat ==0.3.2 + - bugsnag-hs ==0.2.0.7 + - bugzilla-redhat ==0.3.3 - burrito ==1.2.0.2 - butcher ==1.3.3.2 - - buttplug-hs-core ==0.1.0.0 + - buttplug-hs-core ==0.1.0.1 - bv ==0.5 - bv-little ==1.1.1 - byteable ==0.1.1 @@ -318,7 +318,7 @@ default-package-overrides: - byteset ==0.1.1.0 - bytestring-builder ==0.10.8.2.0 - bytestring-conversion ==0.3.1 - - bytestring-lexing ==0.5.0.2 + - bytestring-lexing ==0.5.0.8 - bytestring-mmap ==0.2.2 - bytestring-strict-builder ==0.4.5.4 - bytestring-to-vector ==0.3.0.1 @@ -329,7 +329,7 @@ default-package-overrides: - c14n ==0.1.0.1 - c2hs ==0.28.8 - cabal2spec ==2.6.2 - - cabal-appimage ==0.3.0.2 + - cabal-appimage ==0.3.0.3 - cabal-clean ==0.1.20210924 - cabal-debian ==5.1 - cabal-doctest ==1.0.8 @@ -355,12 +355,12 @@ default-package-overrides: - casing ==0.1.4.1 - cassava ==0.5.2.0 - cassava-conduit ==0.6.0 - - cassava-megaparsec ==2.0.2 + - cassava-megaparsec ==2.0.4 - cast ==0.1.0.2 - category ==0.2.5.0 - - cayley-client ==0.4.15 - - cborg ==0.2.5.0 - - cborg-json ==0.2.2.0 + - cayley-client ==0.4.16 + - cborg ==0.2.6.0 + - cborg-json ==0.2.3.0 - cdar-mBound ==0.1.0.4 - c-enum ==0.1.0.1 - cereal ==0.5.8.1 @@ -372,11 +372,11 @@ default-package-overrides: - chan ==0.0.4.1 - ChannelT ==0.0.0.7 - character-cases ==0.1.0.6 - - charset ==0.3.8 + - charset ==0.3.9 - charsetdetect-ae ==1.1.0.4 - Chart ==1.9.3 - chaselev-deque ==0.5.0.5 - - ChasingBottoms ==1.3.1.10 + - ChasingBottoms ==1.3.1.11 - cheapskate ==0.1.1.2 - cheapskate-highlight ==0.1.0.0 - cheapskate-lucid ==0.1.0.0 @@ -396,9 +396,9 @@ default-package-overrides: - circle-packing ==0.1.0.6 - circular ==0.4.0.1 - citeproc ==0.4.0.1 - - clash-ghc ==1.4.3 - - clash-lib ==1.4.3 - - clash-prelude ==1.4.3 + - clash-ghc ==1.4.6 + - clash-lib ==1.4.6 + - clash-prelude ==1.4.6 - classy-prelude ==1.5.0 - classy-prelude-conduit ==1.5.0 - clay ==0.13.3 @@ -418,15 +418,15 @@ default-package-overrides: - collect-errors ==0.1.5.0 - co-log-concurrent ==0.5.1.0 - co-log-core ==0.2.1.1 - - Color ==0.3.2 + - Color ==0.3.3 - colorful-monoids ==0.2.1.3 - colorize-haskell ==1.0.1 - colour ==2.3.6 - combinatorial ==0.1.0.1 - comfort-array ==0.4.1 - comfort-graph ==0.0.3.1 - - commonmark ==0.2.1 - - commonmark-extensions ==0.2.1.2 + - commonmark ==0.2.1.1 + - commonmark-extensions ==0.2.2.1 - commonmark-pandoc ==0.2.1.1 - commutative ==0.0.2 - comonad ==5.0.8 @@ -466,21 +466,21 @@ default-package-overrides: - connection-pool ==0.2.2 - console-style ==0.0.2.1 - constraint ==0.1.4.0 - - constraints ==0.13 - - constraints-extras ==0.3.1.0 + - constraints ==0.13.1 + - constraints-extras ==0.3.2.0 - constraint-tuples ==0.1.2 - construct ==0.3.0.2 - contravariant ==1.5.5 - - contravariant-extras ==0.3.5.2 + - contravariant-extras ==0.3.5.3 - control-bool ==0.2.1 - control-dsl ==0.2.1.3 - control-monad-free ==0.6.2 - control-monad-omega ==0.3.2 - convertible ==1.1.1.0 - cookie ==0.4.5 - - core-data ==0.2.1.9 - - core-program ==0.2.9.1 - - core-text ==0.3.2.0 + - core-data ==0.2.1.11 + - core-program ==0.2.12.0 + - core-text ==0.3.5.0 - countable ==1.0 - country ==0.2.1 - cpphs ==1.20.9.1 @@ -490,7 +490,7 @@ default-package-overrides: - crackNum ==3.1 - crc32c ==0.0.0 - credential-store ==0.1.2 - - criterion ==1.5.10.0 + - criterion ==1.5.11.0 - criterion-measurement ==0.1.3.0 - cron ==0.7.0 - crypto-api ==0.13.3 @@ -498,9 +498,9 @@ default-package-overrides: - crypto-enigma ==0.1.1.6 - cryptohash ==0.11.9 - cryptohash-cryptoapi ==0.1.4 - - cryptohash-md5 ==0.11.100.1 + - cryptohash-md5 ==0.11.101.0 - cryptohash-sha1 ==0.11.100.1 - - cryptohash-sha256 ==0.11.102.0 + - cryptohash-sha256 ==0.11.102.1 - cryptohash-sha512 ==0.11.100.1 - cryptonite ==0.29 - cryptonite-conduit ==0.2.2 @@ -554,13 +554,13 @@ default-package-overrides: - data-forest ==0.1.0.8 - data-has ==0.4.0.0 - data-hash ==0.2.0.1 - - data-interval ==2.1.0 + - data-interval ==2.1.1 - data-inttrie ==0.1.4 - data-lens-light ==0.1.2.3 - data-memocombinators ==0.5.1 - data-msgpack ==0.0.13 - data-msgpack-types ==0.0.3 - - data-or ==1.0.0.5 + - data-or ==1.0.0.7 - data-ordlist ==0.4.7.0 - data-ref ==0.0.2 - data-reify ==0.6.3 @@ -620,7 +620,7 @@ default-package-overrides: - dlist-nonempty ==0.1.1 - dns ==4.0.1 - dockerfile ==0.2.0 - - doclayout ==0.3.0.2 + - doclayout ==0.3.1.1 - doctemplates ==0.9 - doctest ==0.17 - doctest-discover ==0.2.0.0 @@ -683,10 +683,10 @@ default-package-overrides: - elynx-tree ==0.5.1.1 - email-validate ==2.3.2.15 - emd ==0.2.0.0 - - emojis ==0.1.1 + - emojis ==0.1.2 - enclosed-exceptions ==1.0.3 - ENIG ==0.0.1.0 - - entropy ==0.4.1.6 + - entropy ==0.4.1.7 - enummapset ==0.6.0.3 - enumset ==0.0.5 - enum-subset-generate ==0.1.0.0 @@ -696,7 +696,7 @@ default-package-overrides: - epub-metadata ==4.5 - eq ==4.2.1 - equal-files ==0.0.5.3 - - equational-reasoning ==0.7.0.0 + - equational-reasoning ==0.7.0.1 - equivalence ==0.3.5 - erf ==2.0.0.0 - error-or ==0.1.2.0 @@ -716,7 +716,7 @@ default-package-overrides: - event-list ==0.1.2 - eventstore ==1.4.1 - every ==0.0.1 - - exact-combinatorics ==0.2.0.9 + - exact-combinatorics ==0.2.0.10 - exact-pi ==0.5.0.1 - exception-hierarchy ==0.1.0.4 - exception-mtl ==0.4.0.1 @@ -925,7 +925,7 @@ default-package-overrides: - gingersnap ==0.3.1.0 - gi-pango ==1.0.24 - githash ==0.1.6.2 - - github-release ==1.3.7 + - github-release ==1.3.8 - github-rest ==1.0.3 - github-types ==0.2.1 - github-webhooks ==0.15.0 @@ -933,7 +933,7 @@ default-package-overrides: - gitrev ==1.3.1 - gi-xlib ==2.0.10 - gl ==0.9 - - glabrous ==2.0.4 + - glabrous ==2.0.5 - GLFW-b ==3.3.0.0 - Glob ==0.10.1 - gloss ==1.13.2.1 @@ -945,13 +945,13 @@ default-package-overrides: - goldplate ==0.2.0 - google-isbn ==1.0.3 - gopher-proxy ==0.1.1.2 - - gothic ==0.1.6 + - gothic ==0.1.7 - gpolyline ==0.1.0.1 - graph-core ==0.3.0.0 - graphite ==0.10.0.1 - graphql-client ==1.1.1 - graphs ==0.7.1 - - graphula ==2.0.0.5 + - graphula ==2.0.1.0 - graphviz ==2999.20.1.0 - graph-wrapper ==0.2.6.0 - gravatar ==0.8.0 @@ -974,7 +974,7 @@ default-package-overrides: - hall-symbols ==0.1.0.6 - hamtsolo ==1.0.3 - HandsomeSoup ==0.4.2 - - hapistrano ==0.4.2.0 + - hapistrano ==0.4.3.0 - happstack-server ==7.7.1.1 - happy ==1.20.0 - happy-meta ==0.2.0.11 @@ -985,7 +985,7 @@ default-package-overrides: - hashids ==1.0.2.4 - hashing ==0.1.0.1 - hashmap ==1.3.3 - - hashtables ==1.2.4.1 + - hashtables ==1.2.4.2 - haskeline ==0.8.2 - haskell-awk ==1.2.0.1 - haskell-gi ==0.25.0 @@ -1003,7 +1003,7 @@ default-package-overrides: - haskell-src-meta ==0.8.7 - haskey-btree ==0.3.0.1 - hasktags ==0.72.0 - - hasql ==1.4.5.2 + - hasql ==1.4.5.3 - hasql-notifications ==0.2.0.0 - hasql-optparse-applicative ==0.3.0.6 - hasql-pool ==0.5.2 @@ -1011,7 +1011,7 @@ default-package-overrides: - hasql-transaction ==1.0.1 - hasty-hamiltonian ==1.3.4 - HaTeX ==3.22.3.0 - - HaXml ==1.25.6 + - HaXml ==1.25.7 - haxr ==3000.11.4.1 - HCodecs ==0.5.2 - hdaemonize ==0.5.6 @@ -1082,7 +1082,7 @@ default-package-overrides: - hourglass ==0.2.12 - hourglass-orphans ==0.1.0.0 - hp2pretty ==0.10 - - hpack ==0.34.4 + - hpack ==0.34.5 - hpack-dhall ==0.5.3 - hpc-codecov ==0.3.0.0 - hpc-lcov ==1.0.1 @@ -1101,7 +1101,7 @@ default-package-overrides: - hsinstall ==2.6 - HSlippyMap ==3.0.1 - hslogger ==1.3.1.0 - - hslua ==1.3.0.1 + - hslua ==1.3.0.2 - hslua-aeson ==1.0.3.1 - hslua-module-doclayout ==0.2.0.1 - hslua-module-path ==0.1.0.1 @@ -1161,7 +1161,7 @@ default-package-overrides: - http-directory ==0.1.8 - http-download ==0.2.0.0 - httpd-shed ==0.4.1.1 - - http-link-header ==1.2.0 + - http-link-header ==1.2.1 - http-media ==0.8.0.0 - http-query ==0.1.0.1 - http-reverse-proxy ==0.6.0 @@ -1229,18 +1229,18 @@ default-package-overrides: - indexed-containers ==0.1.0.2 - indexed-list-literals ==0.2.1.3 - indexed-profunctors ==0.1.1 - - indexed-traversable ==0.1.1 + - indexed-traversable ==0.1.2 - indexed-traversable-instances ==0.1 - infer-license ==0.2.0 - inflections ==0.4.0.6 - - influxdb ==1.9.2 + - influxdb ==1.9.2.1 - ini ==0.4.1 - inj ==1.0 - inline-c ==0.9.1.5 - inline-c-cpp ==0.4.0.3 - inline-r ==0.10.4 - inliterate ==0.1.0 - - input-parsers ==0.2.3 + - input-parsers ==0.2.3.1 - insert-ordered-containers ==0.2.5 - inspection-testing ==0.4.6.0 - instance-control ==0.1.2.0 @@ -1257,9 +1257,9 @@ default-package-overrides: - intervals ==0.9.2 - intro ==0.9.0.0 - intset-imperative ==0.1.0.0 - - invariant ==0.5.4 + - invariant ==0.5.5 - invertible ==0.2.0.7 - - invertible-grammar ==0.1.3.1 + - invertible-grammar ==0.1.3.2 - io-machine ==0.2.0.0 - io-manager ==0.1.0.3 - io-memoize ==1.1.1.0 @@ -1270,8 +1270,8 @@ default-package-overrides: - ip6addr ==1.0.2 - ipa ==0.3.1.1 - iproute ==1.7.11 - - IPv6Addr ==2.0.2 - - ipynb ==0.1.0.1 + - IPv6Addr ==2.0.3 + - ipynb ==0.1.0.2 - ipython-kernel ==0.10.2.1 - irc ==0.6.1.0 - irc-client ==1.1.2.2 @@ -1299,12 +1299,12 @@ default-package-overrides: - js-flot ==0.8.3 - js-jquery ==3.3.1 - json ==0.10 - - json-feed ==1.0.13 + - json-feed ==1.0.14 - jsonifier ==0.1.1 - jsonpath ==0.2.0.0 - json-rpc ==1.0.3 - json-rpc-generic ==0.2.1.6 - - JuicyPixels ==3.3.5 + - JuicyPixels ==3.3.6 - JuicyPixels-blurhash ==0.1.0.3 - JuicyPixels-extra ==0.5.2 - JuicyPixels-scale-dct ==0.1.2 @@ -1313,7 +1313,7 @@ default-package-overrides: - jwt ==0.10.0 - kan-extensions ==5.2.3 - kanji ==3.4.1 - - katip ==0.8.5.0 + - katip ==0.8.6.0 - katip-logstash ==0.1.0.0 - kawhi ==0.3.0 - kazura-queue ==0.1.0.4 @@ -1323,7 +1323,7 @@ default-package-overrides: - keys ==3.12.3 - ki ==0.2.0.1 - kind-apply ==0.3.2.0 - - kind-generics ==0.4.1.0 + - kind-generics ==0.4.1.2 - kind-generics-th ==0.2.2.2 - kmeans ==0.1.3 - koji ==0.0.2 @@ -1334,7 +1334,7 @@ default-package-overrides: - labels ==0.3.3 - lackey ==1.0.15 - lambdabot-core ==5.3.0.2 - - LambdaHack ==0.10.2.0 + - LambdaHack ==0.10.3.0 - lame ==0.2.0 - language-avro ==0.1.3.1 - language-bash ==0.9.2 @@ -1365,7 +1365,7 @@ default-package-overrides: - learn-physics ==0.6.5 - lens ==4.19.2 - lens-action ==0.2.5 - - lens-aeson ==1.1.1 + - lens-aeson ==1.1.2 - lens-csv ==0.1.1.0 - lens-datetime ==0.3 - lens-family ==2.0.0 @@ -1387,7 +1387,7 @@ default-package-overrides: - liboath-hs ==0.0.1.2 - libyaml ==0.1.2 - LibZip ==1.0.1 - - lifted-async ==0.10.2.1 + - lifted-async ==0.10.2.2 - lifted-base ==0.2.3.12 - lift-generics ==0.2.1 - lift-type ==0.1.0.1 @@ -1418,7 +1418,7 @@ default-package-overrides: - loch-th ==0.2.2 - lockfree-queue ==0.2.3.1 - log-domain ==0.13.1 - - logfloat ==0.13.3.3 + - logfloat ==0.13.4 - logging ==3.0.5 - logging-facade ==0.3.0 - logging-facade-syslog ==1 @@ -1488,13 +1488,13 @@ default-package-overrides: - microlens ==0.4.12.0 - microlens-aeson ==2.3.1 - microlens-contra ==0.1.0.2 - - microlens-ghc ==0.4.13 + - microlens-ghc ==0.4.13.1 - microlens-mtl ==0.2.0.1 - microlens-platform ==0.4.2 - microlens-process ==0.2.0.2 - microlens-th ==0.4.3.10 - microspec ==0.2.1.3 - - microstache ==1.0.1.2 + - microstache ==1.0.2 - midair ==0.2.0.1 - midi ==0.2.2.2 - mighty-metropolis ==2.0.0 @@ -1555,7 +1555,7 @@ default-package-overrides: - monad-unlift ==0.2.0 - monad-unlift-ref ==0.2.1 - mongoDB ==2.7.1.1 - - monoid-subclasses ==1.1.1 + - monoid-subclasses ==1.1.2 - monoid-transformer ==0.0.4 - mono-traversable ==1.0.15.3 - mono-traversable-instances ==0.1.1.0 @@ -1580,7 +1580,7 @@ default-package-overrides: - multiset ==0.3.4.3 - multistate ==0.8.0.3 - murmur3 ==1.0.5 - - murmur-hash ==0.1.0.9 + - murmur-hash ==0.1.0.10 - MusicBrainz ==0.4.1 - mustache ==2.3.1 - mutable-containers ==0.3.4 @@ -1588,8 +1588,8 @@ default-package-overrides: - mwc-random ==0.15.0.2 - mwc-random-monad ==0.7.3.1 - mx-state-codes ==1.0.0.0 - - mysql ==0.2.0.1 - - mysql-simple ==0.4.6 + - mysql ==0.2.1 + - mysql-simple ==0.4.7 - n2o ==0.11.1 - nagios-check ==0.3.2 - names-th ==0.3.0.1 @@ -1601,7 +1601,7 @@ default-package-overrides: - natural-transformation ==0.4 - ndjson-conduit ==0.1.0.5 - neat-interpolation ==0.5.1.2 - - netcode-io ==0.0.2 + - netcode-io ==0.0.3 - netlib-carray ==0.1 - netlib-comfort-array ==0.0.0.2 - netlib-ffi ==0.1.1 @@ -1627,7 +1627,7 @@ default-package-overrides: - network-transport-composed ==0.2.1 - network-uri ==2.6.4.1 - newtype ==0.2.2.0 - - newtype-generics ==0.6 + - newtype-generics ==0.6.1 - nicify-lib ==1.0.1 - NineP ==0.0.2.1 - nix-derivation ==1.1.2 @@ -1646,8 +1646,8 @@ default-package-overrides: - nowdoc ==0.1.1.0 - nqe ==0.6.3 - nri-env-parser ==0.1.0.7 - - nri-observability ==0.1.1.1 - - nri-prelude ==0.6.0.3 + - nri-observability ==0.1.1.3 + - nri-prelude ==0.6.0.5 - nsis ==0.3.3 - numbers ==3000.2.0.2 - numeric-extras ==0.1 @@ -1673,7 +1673,7 @@ default-package-overrides: - OneTuple ==0.2.2.1 - Only ==0.1 - oo-prototypes ==0.1.0.0 - - opaleye ==0.7.4.0 + - opaleye ==0.7.6.1 - OpenAL ==1.7.0.5 - openapi3 ==3.1.0 - open-browser ==0.2.1.0 @@ -1697,7 +1697,7 @@ default-package-overrides: - optional-args ==1.0.2 - options ==1.2.1.1 - optparse-applicative ==0.16.1.0 - - optparse-generic ==1.4.5 + - optparse-generic ==1.4.6 - optparse-simple ==0.1.1.4 - optparse-text ==0.1.1.0 - ordered-containers ==0.2.2 @@ -1712,7 +1712,7 @@ default-package-overrides: - pandoc-dhall-decoder ==0.1.0.1 - pandoc-plot ==1.2.3 - pandoc-throw ==0.1.0.0 - - pandoc-types ==1.22 + - pandoc-types ==1.22.1 - pantry ==0.5.2.3 - parallel ==3.2.2.0 - parameterized ==0.5.0.0 @@ -1758,26 +1758,26 @@ default-package-overrides: - persist ==0.1.1.5 - persistable-record ==0.6.0.5 - persistable-types-HDBC-pg ==0.0.3.5 - - persistent ==2.13.1.2 + - persistent ==2.13.2.1 - persistent-mtl ==0.2.2.0 - persistent-mysql ==2.13.0.2 - persistent-pagination ==0.1.1.2 - - persistent-postgresql ==2.13.1.0 + - persistent-postgresql ==2.13.2.1 - persistent-qq ==2.12.0.1 - persistent-sqlite ==2.13.0.3 - persistent-template ==2.12.0.0 - persistent-test ==2.13.0.3 - - persistent-typed-db ==0.1.0.4 + - persistent-typed-db ==0.1.0.5 - pg-harness-client ==0.6.0 - pgp-wordlist ==0.1.0.3 - pg-transact ==0.3.2.0 - phantom-state ==0.2.1.2 - - pid1 ==0.1.2.0 + - pid1 ==0.1.3.0 - pinboard ==0.10.2.0 - pipes ==4.3.16 - pipes-aeson ==0.4.1.8 - pipes-attoparsec ==0.5.1.5 - - pipes-binary ==0.4.2 + - pipes-binary ==0.4.3 - pipes-bytestring ==2.1.7 - pipes-concurrency ==2.0.12 - pipes-csv ==1.4.3 @@ -1798,9 +1798,9 @@ default-package-overrides: - placeholders ==0.1 - plaid ==0.1.0.4 - plotlyhs ==0.2.1 - - pointed ==5.0.2 + - pointed ==5.0.3 - pointedlist ==0.6.1 - - pointless-fun ==1.1.0.6 + - pointless-fun ==1.1.0.8 - poll ==0.0.0.2 - polling-cache ==0.1.1.0 - poly ==0.5.0.0 @@ -1827,7 +1827,7 @@ default-package-overrides: - prairie ==0.0.1.0 - prefix-units ==0.2.0 - prelude-compat ==0.0.0.2 - - prelude-safeenum ==0.1.1.2 + - prelude-safeenum ==0.1.1.3 - prettyclass ==1.0.0.0 - pretty-class ==1.0.1.1 - pretty-diff ==0.4.0.3 @@ -1844,7 +1844,7 @@ default-package-overrides: - pretty-sop ==0.2.0.3 - pretty-terminal ==0.1.0.0 - primes ==0.2.1.0 - - primitive ==0.7.2.0 + - primitive ==0.7.3.0 - primitive-addr ==0.1.0.2 - primitive-extras ==0.10.1 - primitive-unaligned ==0.1.1.1 @@ -1879,10 +1879,10 @@ default-package-overrides: - ptr-poker ==0.1.1.4 - publicsuffix ==0.20200526 - pulse-simple ==0.1.14 - - pureMD5 ==2.1.3 + - pureMD5 ==2.1.4 - purescript-bridge ==0.14.0.0 - pushbullet-types ==0.4.1.0 - - pusher-http-haskell ==2.1.0.3 + - pusher-http-haskell ==2.1.0.5 - pvar ==1.0.0.0 - PyF ==0.9.0.3 - qchas ==1.1.0.1 @@ -1927,7 +1927,7 @@ default-package-overrides: - rank2classes ==1.4.3 - Rasterific ==0.7.5.4 - rasterific-svg ==0.3.3.2 - - ratel ==1.0.15 + - ratel ==1.0.16 - rate-limit ==1.4.2 - ratel-wai ==1.1.5 - rattle ==0.2 @@ -1950,8 +1950,8 @@ default-package-overrides: - record-hasfield ==1.0 - records-sop ==0.1.1.0 - record-wrangler ==0.1.1.0 - - recursion-schemes ==5.2.2.1 - - reducers ==3.12.3 + - recursion-schemes ==5.2.2.2 + - reducers ==3.12.4 - refact ==0.3.0.2 - ref-fd ==0.5 - refined ==0.6.2 @@ -2017,7 +2017,7 @@ default-package-overrides: - rosezipper ==0.2 - rot13 ==0.2.0.1 - rpmbuild-order ==0.4.5 - - rpm-nvr ==0.1.0 + - rpm-nvr ==0.1.1 - rp-tree ==0.6 - RSA ==2.4.1 - runmemo ==1.0.0.1 @@ -2072,7 +2072,7 @@ default-package-overrides: - semialign-indexed ==1.1 - semialign-optics ==1.1 - semigroupoid-extras ==5 - - semigroupoids ==5.3.5 + - semigroupoids ==5.3.6 - semigroups ==0.19.2 - semirings ==0.6 - semiring-simple ==1.0.0.1 @@ -2085,7 +2085,7 @@ default-package-overrides: - sequence-formats ==1.6.1 - sequenceTools ==1.5.0 - serf ==0.1.1.0 - - serialise ==0.2.3.0 + - serialise ==0.2.4.0 - servant ==0.18.3 - servant-auth ==0.4.0.0 - servant-auth-client ==0.4.1.0 @@ -2112,7 +2112,7 @@ default-package-overrides: - servant-rawm ==1.0.0.0 - servant-server ==0.18.3 - servant-swagger ==1.1.10 - - servant-swagger-ui ==0.3.5.3.47.1 + - servant-swagger-ui ==0.3.5.3.52.5 - servant-swagger-ui-core ==0.3.5 - serverless-haskell ==0.12.6 - serversession ==1.0.2 @@ -2121,7 +2121,7 @@ default-package-overrides: - set-cover ==0.1.1 - setenv ==0.1.1.3 - setlocale ==1.0.0.10 - - sexp-grammar ==2.3.3 + - sexp-grammar ==2.3.3.1 - SHA ==1.6.4.4 - shake ==0.19.6 - shake-language-c ==0.12.0 @@ -2206,7 +2206,7 @@ default-package-overrides: - splice ==0.6.1.1 - splint ==1.0.1.4 - split ==0.2.3.4 - - splitmix ==0.1.0.3 + - splitmix ==0.1.0.4 - splitmix-distributions ==0.9.0.0 - spoon ==0.3.1 - spreadsheet ==0.1.3.8 @@ -2228,7 +2228,7 @@ default-package-overrides: - status-notifier-item ==0.3.1.0 - stb-image-redux ==0.2.1.3 - step-function ==0.2 - - stm-chans ==3.0.0.4 + - stm-chans ==3.0.0.6 - stm-conduit ==4.0.1 - stm-delay ==0.1.1.1 - stm-extras ==0.1.0.3 @@ -2272,9 +2272,9 @@ default-package-overrides: - stripe-core ==2.6.2 - stripe-haskell ==2.6.2 - stripe-http-client ==2.6.2 - - strive ==5.0.14 + - strive ==5.0.16 - structs ==0.1.6 - - structured ==0.1.0.1 + - structured ==0.1.1 - structured-cli ==2.7.0.1 - subcategories ==0.1.1.0 - sum-type-boilerplate ==0.1.1 @@ -2284,7 +2284,7 @@ default-package-overrides: - swagger ==0.3.0 - swagger2 ==2.6 - sweet-egison ==0.1.1.3 - - swish ==0.10.0.5 + - swish ==0.10.0.7 - syb ==0.7.2.1 - sydtest ==0.2.0.0 - sydtest-discover ==0.0.0.0 @@ -2342,7 +2342,7 @@ default-package-overrides: - TCache ==0.12.1 - tce-conf ==1.3 - tdigest ==0.2.1.1 - - template-haskell-compat-v0208 ==0.1.6 + - template-haskell-compat-v0208 ==0.1.7 - temporary ==1.3 - temporary-rc ==1.2.0.3 - temporary-resourcet ==0.1.0.1 @@ -2358,7 +2358,7 @@ default-package-overrides: - test-framework-smallcheck ==0.2 - test-fun ==0.1.0.0 - testing-type-modifiers ==0.1.0.1 - - texmath ==0.12.3.1 + - texmath ==0.12.3.2 - text-ansi ==0.1.1 - text-binary ==0.2.1.1 - text-builder ==0.6.6.3 @@ -2429,7 +2429,7 @@ default-package-overrides: - timezone-series ==0.1.9 - tinylog ==0.15.0 - titlecase ==1.0.1 - - tldr ==0.9.1 + - tldr ==0.9.2 - tls ==1.5.5 - tls-debug ==0.4.8 - tls-session-manager ==0.0.4 @@ -2448,7 +2448,7 @@ default-package-overrides: - transformers-compat ==0.6.6 - transformers-fix ==1.0 - traverse-with-class ==1.0.1.1 - - tree-diff ==0.2 + - tree-diff ==0.2.1 - tree-fun ==0.8.1.0 - tree-view ==0.5.1 - trifecta ==2.1.1 @@ -2457,7 +2457,7 @@ default-package-overrides: - tsv2csv ==0.1.0.2 - ttc ==1.1.0.2 - ttl-hashtables ==1.4.1.0 - - ttrie ==0.1.2.1 + - ttrie ==0.1.2.2 - tuple ==0.3.0.2 - tuples-homogenous-h98 ==0.1.1.0 - tuple-sop ==0.3.1.0 @@ -2465,7 +2465,7 @@ default-package-overrides: - turtle ==1.5.22 - typecheck-plugin-nat-simple ==0.1.0.2 - TypeCompose ==0.9.14 - - typed-process ==0.2.6.3 + - typed-process ==0.2.7.0 - typed-uuid ==0.1.0.0 - type-equality ==1 - type-errors ==0.2.0.0 @@ -2520,7 +2520,7 @@ default-package-overrides: - universe-reverse-instances ==1.1.1 - universe-some ==1.2.1 - universum ==1.7.2 - - unix-bytestring ==0.3.7.3 + - unix-bytestring ==0.3.7.5 - unix-compat ==0.5.3 - unix-time ==0.4.7 - unliftio ==0.2.20 @@ -2591,15 +2591,15 @@ default-package-overrides: - wai-cors ==0.2.7 - wai-enforce-https ==0.0.2.1 - wai-eventsource ==3.0.0 - - wai-extra ==3.1.6 - - wai-feature-flags ==0.1.0.1 + - wai-extra ==3.1.7 + - wai-feature-flags ==0.1.0.2 - wai-handler-launch ==3.0.3.1 - wai-logger ==2.3.6 - wai-middleware-auth ==0.2.5.1 - wai-middleware-caching ==0.1.0.2 - wai-middleware-clacks ==0.1.0.1 - wai-middleware-prometheus ==1.0.0.1 - - wai-middleware-static ==0.9.0 + - wai-middleware-static ==0.9.1 - wai-rate-limit ==0.1.0.0 - wai-rate-limit-redis ==0.1.0.0 - wai-saml2 ==0.2.1.2 @@ -2619,7 +2619,7 @@ default-package-overrides: - webex-teams-pipes ==0.2.0.1 - webgear-server ==0.2.1 - webrtc-vad ==0.1.0.3 - - websockets ==0.12.7.2 + - websockets ==0.12.7.3 - websockets-snap ==0.10.3.1 - weigh ==0.0.16 - wide-word ==0.1.1.2 @@ -2630,7 +2630,7 @@ default-package-overrides: - Win32-notify ==0.3.0.3 - windns ==0.1.0.1 - witch ==0.3.4.0 - - witherable ==0.4.1 + - witherable ==0.4.2 - within ==0.2.0.1 - with-location ==0.1.0 - with-utf8 ==1.0.2.2 @@ -2651,7 +2651,7 @@ default-package-overrides: - writer-cps-transformers ==0.5.6.1 - wss-client ==0.3.0.0 - wuss ==1.1.18 - - X11 ==1.10.1 + - X11 ==1.10.2 - X11-xft ==0.3.1 - x11-xim ==0.0.9.0 - x509 ==1.7.5 @@ -2683,8 +2683,8 @@ default-package-overrides: - xmonad-extras ==0.15.3 - xss-sanitize ==0.3.6 - xxhash-ffi ==0.2.0.0 - - yaml ==0.11.6.0 - - yamlparse-applicative ==0.2.0.0 + - yaml ==0.11.7.0 + - yamlparse-applicative ==0.2.0.1 - yesod ==1.6.1.2 - yesod-auth ==1.6.10.4 - yesod-auth-hashdb ==1.7.1.7 @@ -2709,14 +2709,14 @@ default-package-overrides: - yjtools ==0.9.18 - yoga ==0.0.0.5 - youtube ==0.2.1.1 - - zenacy-html ==2.0.3 + - zenacy-html ==2.0.4 - zenacy-unicode ==1.0.1 - zero ==0.1.5 - zeromq4-haskell ==0.8.0 - zeromq4-patterns ==0.3.1.0 - zim-parser ==0.2.1.0 - zio ==0.1.0.2 - - zip ==1.7.1 + - zip ==1.7.2 - zip-archive ==0.4.1 - zipper-extra ==0.1.3.2 - zippers ==0.3.1 diff --git a/pkgs/development/haskell-modules/configuration-hackage2nix/transitive-broken.yaml b/pkgs/development/haskell-modules/configuration-hackage2nix/transitive-broken.yaml index b1d9b7b551a6..3afd15cb4484 100644 --- a/pkgs/development/haskell-modules/configuration-hackage2nix/transitive-broken.yaml +++ b/pkgs/development/haskell-modules/configuration-hackage2nix/transitive-broken.yaml @@ -223,7 +223,6 @@ dont-distribute-packages: - InfixApplicative - JSON-Combinator - JSON-Combinator-Examples - - JSONb - Javasf - JsContracts - JsonGrammar @@ -234,7 +233,6 @@ dont-distribute-packages: - KiCS-debugger - KiCS-prophecy - LDAPv3 - - LambdaDesigner - LambdaINet - LambdaPrettyQuote - LambdaShell @@ -408,7 +406,6 @@ dont-distribute-packages: - agda-snippets-hakyll - agentx - aip - - airship - aivika-distributed - algebra-checkers - algebra-driven-design @@ -484,6 +481,7 @@ dont-distribute-packages: - atuin - audiovisual - aura + - aura_3_2_6 - authoring - autonix-deps-kf5 - avers @@ -728,9 +726,7 @@ dont-distribute-packages: - claferwiki - clash - clash-ghc - - clash-ghc_1_4_5 - clash-lib - - clash-lib_1_4_5 - clash-multisignal - clash-prelude-quickcheck - clash-shake @@ -1003,7 +999,6 @@ dont-distribute-packages: - dph-prim-interface - dph-prim-par - dph-prim-seq - - dprox - dropbox-sdk - dropsolve - dsh-sql @@ -1029,7 +1024,7 @@ dont-distribute-packages: - egison-quote - egison-tutorial - elerea-examples - - eliminators_0_8 + - eliminators_0_9 - elliptic-curve - elsa - emacs-keys @@ -1045,6 +1040,7 @@ dont-distribute-packages: - enumeration - enumerator-fd - enumerator-tf + - envy-extensible - ephemeral - erf-native - eros-client @@ -1053,6 +1049,7 @@ dont-distribute-packages: - errors-ext - ersatz-toysat - esotericbot + - esqueleto-streaming - estreps - eternity - eternity-timestamped @@ -1724,7 +1721,6 @@ dont-distribute-packages: - iException - ice40-prim - ide-backend - - ide-backend-common - ide-backend-server - ideas-math - ideas-math-types @@ -1819,6 +1815,7 @@ dont-distribute-packages: - jmonkey - jobs-ui - join + - jordan-openapi - jot - jsc - jsmw @@ -1904,9 +1901,7 @@ dont-distribute-packages: - lambdacube - lambdacube-bullet - lambdacube-compiler - - lambdacube-core - lambdacube-edsl - - lambdacube-engine - lambdacube-examples - lambdacube-gl - lambdacube-samples @@ -1922,11 +1917,7 @@ dont-distribute-packages: - language-python-colour - language-qux - language-spelling - - lapack - - lapack-carray - - lapack-comfort-array - lapack-hmatrix - - lapack_0_4 - lat - latex-formulae-hakyll - latex-formulae-pandoc @@ -1983,6 +1974,7 @@ dont-distribute-packages: - liquid-base - liquid-bytestring - liquid-containers + - liquid-fixpoint_8_10_7 - liquid-ghc-prim - liquid-parallel - liquid-platform @@ -2296,6 +2288,7 @@ dont-distribute-packages: - pairing - panda - pandoc-japanese-filters + - pandoc_2_16_1 - papa - papa-base - papa-base-implement @@ -2369,6 +2362,7 @@ dont-distribute-packages: - pisigma - pitchtrack - pkgtreediff + - pkgtreediff_0_5_0 - planet-mitchell - plocketed - ploterific @@ -2447,7 +2441,6 @@ dont-distribute-packages: - proto3-suite - protobuf-native - protocol-buffers-descriptor-fork - - psc-ide - puffytools - pugs-compat - pugs-hsregex @@ -2455,9 +2448,7 @@ dont-distribute-packages: - puppetresources - pure-cdb - pure-priority-queue-tests - - purescript - purescript-iso - - purescript-tsd-gen - push-notify - push-notify-apn - push-notify-ccs @@ -2586,7 +2577,6 @@ dont-distribute-packages: - replicant - repr - representable-tries - - req-oauth2 - resistor-cube - resistor-cube_0_0_1_3 - resource-pool-catchio @@ -2871,6 +2861,8 @@ dont-distribute-packages: - sql-simple-postgresql - sql-simple-sqlite - sqlite-simple-typed + - squeal-postgresql-ltree + - squeal-postgresql-uuid-ossp - squeeze - sr-extra - sscgi @@ -2995,7 +2987,6 @@ dont-distribute-packages: - testbench - text-json-qq - text-plus - - text-trie - text-xml-generic - textmatetags - th-alpha @@ -3102,6 +3093,7 @@ dont-distribute-packages: - uhc-light - uhc-util - unagi-bloomfilter + - unbeliever - unbound - unfoldable-restricted - uni-events @@ -3205,7 +3197,6 @@ dont-distribute-packages: - web-routes-regular - web-routing - web3 - - webapi - webcrank-wai - webdriver-w3c - webserver @@ -3284,6 +3275,7 @@ dont-distribute-packages: - yam-web - yaml-rpc-scotty - yaml-rpc-snap + - yaml-streamly - yaml-unscrambler - yarr-image-io - yavie @@ -3312,7 +3304,6 @@ dont-distribute-packages: - yu-launch - yuuko - zasni-gerna - - zephyr - zerobin - zeromq3-conduit - zeromq3-haskell diff --git a/pkgs/development/haskell-modules/configuration-nix.nix b/pkgs/development/haskell-modules/configuration-nix.nix index 5fc968ccddeb..3283cd398b5c 100644 --- a/pkgs/development/haskell-modules/configuration-nix.nix +++ b/pkgs/development/haskell-modules/configuration-nix.nix @@ -43,10 +43,10 @@ with haskellLib; self: super: builtins.intersectAttrs super { # Apply NixOS-specific patches. - ghc-paths = appendPatch super.ghc-paths ./patches/ghc-paths-nix.patch; + ghc-paths = appendPatch ./patches/ghc-paths-nix.patch super.ghc-paths; # fix errors caused by hardening flags - epanet-haskell = disableHardening super.epanet-haskell ["format"]; + epanet-haskell = disableHardening ["format"] super.epanet-haskell; # Link the proper version. zeromq4-haskell = super.zeromq4-haskell.override { zeromq = pkgs.zeromq4; }; @@ -56,7 +56,7 @@ self: super: builtins.intersectAttrs super { mysql = dontCheck super.mysql; # CUDA needs help finding the SDK headers and libraries. - cuda = overrideCabal super.cuda (drv: { + cuda = overrideCabal (drv: { extraLibraries = (drv.extraLibraries or []) ++ [pkgs.linuxPackages.nvidia_x11]; configureFlags = (drv.configureFlags or []) ++ [ "--extra-lib-dirs=${pkgs.cudatoolkit.lib}/lib" @@ -65,84 +65,84 @@ self: super: builtins.intersectAttrs super { preConfigure = '' export CUDA_PATH=${pkgs.cudatoolkit} ''; - }); + }) super.cuda; - nvvm = overrideCabal super.nvvm (drv: { + nvvm = overrideCabal (drv: { preConfigure = '' export CUDA_PATH=${pkgs.cudatoolkit} ''; - }); + }) super.nvvm; - cufft = overrideCabal super.cufft (drv: { + cufft = overrideCabal (drv: { preConfigure = '' export CUDA_PATH=${pkgs.cudatoolkit} ''; - }); + }) super.cufft; # jni needs help finding libjvm.so because it's in a weird location. - jni = overrideCabal super.jni (drv: { + jni = overrideCabal (drv: { preConfigure = '' local libdir=( "${pkgs.jdk}/lib/openjdk/jre/lib/"*"/server" ) configureFlags+=" --extra-lib-dir=''${libdir[0]}" ''; - }); + }) super.jni; # The package doesn't know about the AL include hierarchy. # https://github.com/phaazon/al/issues/1 - al = appendConfigureFlag super.al "--extra-include-dirs=${pkgs.openal}/include/AL"; + al = appendConfigureFlag "--extra-include-dirs=${pkgs.openal}/include/AL" super.al; # Won't find it's header files without help. - sfml-audio = appendConfigureFlag super.sfml-audio "--extra-include-dirs=${pkgs.openal}/include/AL"; + sfml-audio = appendConfigureFlag "--extra-include-dirs=${pkgs.openal}/include/AL" super.sfml-audio; # avoid compiling twice by providing executable as a separate output (with small closure size) niv = enableSeparateBinOutput super.niv; ormolu = enableSeparateBinOutput super.ormolu; ghcid = enableSeparateBinOutput super.ghcid; - hzk = overrideCabal super.hzk (drv: { + hzk = overrideCabal (drv: { preConfigure = "sed -i -e /include-dirs/d hzk.cabal"; configureFlags = [ "--extra-include-dirs=${pkgs.zookeeper_mt}/include/zookeeper" ]; - }); + }) super.hzk; - haskakafka = overrideCabal super.haskakafka (drv: { + haskakafka = overrideCabal (drv: { preConfigure = "sed -i -e /extra-lib-dirs/d -e /include-dirs/d haskakafka.cabal"; configureFlags = [ "--extra-include-dirs=${pkgs.rdkafka}/include/librdkafka" ]; - }); + }) super.haskakafka; # library has hard coded directories that need to be removed. Reported upstream here https://github.com/haskell-works/hw-kafka-client/issues/32 - hw-kafka-client = dontCheck (overrideCabal super.hw-kafka-client (drv: { + hw-kafka-client = dontCheck (overrideCabal (drv: { preConfigure = "sed -i -e /extra-lib-dirs/d -e /include-dirs/d -e /librdkafka/d hw-kafka-client.cabal"; configureFlags = [ "--extra-include-dirs=${pkgs.rdkafka}/include/librdkafka" ]; - })); + }) super.hw-kafka-client); # Foreign dependency name clashes with another Haskell package. libarchive-conduit = super.libarchive-conduit.override { archive = pkgs.libarchive; }; # Heist's test suite requires system pandoc - heist = overrideCabal super.heist (drv: { + heist = overrideCabal (drv: { testToolDepends = [pkgs.pandoc]; - }); + }) super.heist; # https://github.com/NixOS/cabal2nix/issues/136 and https://github.com/NixOS/cabal2nix/issues/216 - gio = disableHardening (addPkgconfigDepend (addBuildTool super.gio self.buildHaskellPackages.gtk2hs-buildtools) pkgs.glib) ["fortify"]; - glib = disableHardening (addPkgconfigDepend (addBuildTool super.glib self.buildHaskellPackages.gtk2hs-buildtools) pkgs.glib) ["fortify"]; - gtk3 = disableHardening (super.gtk3.override { inherit (pkgs) gtk3; }) ["fortify"]; - gtk = let gtk1 = addBuildTool super.gtk self.buildHaskellPackages.gtk2hs-buildtools; - gtk2 = addPkgconfigDepend gtk1 pkgs.gtk2; - gtk3 = disableHardening gtk1 ["fortify"]; - gtk4 = if pkgs.stdenv.isDarwin then appendConfigureFlag gtk3 "-fhave-quartz-gtk" else gtk4; + gio = disableHardening ["fortify"] (addPkgconfigDepend pkgs.glib (addBuildTool self.buildHaskellPackages.gtk2hs-buildtools super.gio)); + glib = disableHardening ["fortify"] (addPkgconfigDepend pkgs.glib (addBuildTool self.buildHaskellPackages.gtk2hs-buildtools super.glib)); + gtk3 = disableHardening ["fortify"] (super.gtk3.override { inherit (pkgs) gtk3; }); + gtk = let gtk1 = addBuildTool self.buildHaskellPackages.gtk2hs-buildtools super.gtk; + gtk2 = addPkgconfigDepend pkgs.gtk2 gtk1; + gtk3 = disableHardening ["fortify"] gtk1; + gtk4 = if pkgs.stdenv.isDarwin then appendConfigureFlag "-fhave-quartz-gtk" gtk3 else gtk4; in gtk3; - gtksourceview2 = addPkgconfigDepend super.gtksourceview2 pkgs.gtk2; - gtk-traymanager = addPkgconfigDepend super.gtk-traymanager pkgs.gtk3; + gtksourceview2 = addPkgconfigDepend pkgs.gtk2 super.gtksourceview2; + gtk-traymanager = addPkgconfigDepend pkgs.gtk3 super.gtk-traymanager; # Add necessary reference to gtk3 package - gi-dbusmenugtk3 = addPkgconfigDepend super.gi-dbusmenugtk3 pkgs.gtk3; + gi-dbusmenugtk3 = addPkgconfigDepend pkgs.gtk3 super.gi-dbusmenugtk3; - hs-mesos = overrideCabal super.hs-mesos (drv: { + hs-mesos = overrideCabal (drv: { # Pass _only_ mesos; the correct protobuf is propagated. extraLibraries = [ pkgs.mesos ]; preConfigure = "sed -i -e /extra-lib-dirs/d -e 's|, /usr/include, /usr/local/include/mesos||' hs-mesos.cabal"; - }); + }) super.hs-mesos; # These packages try to access the network. amqp = dontCheck super.amqp; @@ -156,7 +156,7 @@ self: super: builtins.intersectAttrs super { hadoop-rpc = dontCheck super.hadoop-rpc; # http://hydra.cryp.to/build/527461/nixlog/2/raw hasql = dontCheck super.hasql; # http://hydra.cryp.to/build/502489/nixlog/4/raw hasql-transaction = dontCheck super.hasql-transaction; # wants to connect to postgresql - hjsonschema = overrideCabal super.hjsonschema (drv: { testTarget = "local"; }); + hjsonschema = overrideCabal (drv: { testTarget = "local"; }) super.hjsonschema; marmalade-upload = dontCheck super.marmalade-upload; # http://hydra.cryp.to/build/501904/nixlog/1/raw mongoDB = dontCheck super.mongoDB; network-transport-tcp = dontCheck super.network-transport-tcp; @@ -203,10 +203,10 @@ self: super: builtins.intersectAttrs super { mattermost-api = dontCheck super.mattermost-api; # Expect to find sendmail(1) in $PATH. - mime-mail = appendConfigureFlag super.mime-mail "--ghc-option=-DMIME_MAIL_SENDMAIL_PATH=\"sendmail\""; + mime-mail = appendConfigureFlag "--ghc-option=-DMIME_MAIL_SENDMAIL_PATH=\"sendmail\"" super.mime-mail; # Help the test suite find system timezone data. - tz = overrideCabal super.tz (drv: { + tz = overrideCabal (drv: { preConfigure = "export TZDIR=${pkgs.tzdata}/share/zoneinfo"; patches = [ # Fix tests failing with libSystem, musl etc. due to a lack of @@ -218,37 +218,37 @@ self: super: builtins.intersectAttrs super { sha256 = "1f53w8k1vpy39hzalyykpvm946ykkarj2714w988jdp4c2c4l4cf"; }) ] ++ (drv.patches or []); - }); + }) super.tz; # Nix-specific workaround - xmonad = appendPatch (dontCheck super.xmonad) ./patches/xmonad-nix.patch; + xmonad = appendPatch ./patches/xmonad-nix.patch (dontCheck super.xmonad); # wxc supports wxGTX >= 3.0, but our current default version points to 2.8. # http://hydra.cryp.to/build/1331287/log/raw - wxc = (addBuildDepend super.wxc self.split).override { wxGTK = pkgs.wxGTK30; }; + wxc = (addBuildDepend self.split super.wxc).override { wxGTK = pkgs.wxGTK30; }; wxcore = super.wxcore.override { wxGTK = pkgs.wxGTK30; }; # Test suite wants to connect to $DISPLAY. bindings-GLFW = dontCheck super.bindings-GLFW; gi-gtk-declarative = dontCheck super.gi-gtk-declarative; gi-gtk-declarative-app-simple = dontCheck super.gi-gtk-declarative-app-simple; - hsqml = dontCheck (addExtraLibraries (super.hsqml.override { qt5 = pkgs.qt5Full; }) [pkgs.libGLU pkgs.libGL]); + hsqml = dontCheck (addExtraLibraries [pkgs.libGLU pkgs.libGL] (super.hsqml.override { qt5 = pkgs.qt5Full; })); monomer = dontCheck super.monomer; # Wants to check against a real DB, Needs freetds - odbc = dontCheck (addExtraLibraries super.odbc [ pkgs.freetds ]); + odbc = dontCheck (addExtraLibraries [ pkgs.freetds ] super.odbc); # Tests attempt to use NPM to install from the network into # /homeless-shelter. Disabled. purescript = dontCheck super.purescript; # Hardcoded include path - poppler = overrideCabal super.poppler (drv: { + poppler = overrideCabal (drv: { postPatch = '' sed -i -e 's,glib/poppler.h,poppler.h,' poppler.cabal sed -i -e 's,glib/poppler.h,poppler.h,' Graphics/UI/Gtk/Poppler/Structs.hsc ''; - }); + }) super.poppler; # Uses OpenGL in testing caramia = dontCheck super.caramia; @@ -257,10 +257,10 @@ self: super: builtins.intersectAttrs super { llvm-hs = super.llvm-hs.override { llvm-config = pkgs.llvm_9; }; # Needs help finding LLVM. - spaceprobe = addBuildTool super.spaceprobe self.buildHaskellPackages.llvmPackages.llvm; + spaceprobe = addBuildTool self.buildHaskellPackages.llvmPackages.llvm super.spaceprobe; # Tries to run GUI in tests - leksah = dontCheck (overrideCabal super.leksah (drv: { + leksah = dontCheck (overrideCabal (drv: { executableSystemDepends = (drv.executableSystemDepends or []) ++ (with pkgs; [ gnome.adwaita-icon-theme # Fix error: Icon 'window-close' not present in theme ... wrapGAppsHook # Fix error: GLib-GIO-ERROR **: No GSettings schemas are installed on the system @@ -272,12 +272,10 @@ self: super: builtins.intersectAttrs super { substituteInPlace "$f" --replace "\"leksah-server\"" "\"${self.leksah-server}/bin/leksah-server\"" done ''; - })); + }) super.leksah); dyre = appendPatch - # dyre's tests appear to be trying to directly call GHC. - (dontCheck super.dyre) # Dyre needs special support for reading the NIX_GHC env var. This is # available upstream in https://github.com/willdonnelly/dyre/pull/43, but # hasn't been released to Hackage as of dyre-0.9.1. Likely included in @@ -285,46 +283,48 @@ self: super: builtins.intersectAttrs super { (pkgs.fetchpatch { url = "https://github.com/willdonnelly/dyre/commit/c7f29d321aae343d6b314f058812dffcba9d7133.patch"; sha256 = "10m22k35bi6cci798vjpy4c2l08lq5nmmj24iwp0aflvmjdgscdb"; - }); + }) + # dyre's tests appear to be trying to directly call GHC. + (dontCheck super.dyre); # https://github.com/edwinb/EpiVM/issues/13 # https://github.com/edwinb/EpiVM/issues/14 - epic = addExtraLibraries (addBuildTool super.epic self.buildHaskellPackages.happy) [pkgs.boehmgc pkgs.gmp]; + epic = addExtraLibraries [pkgs.boehmgc pkgs.gmp] (addBuildTool self.buildHaskellPackages.happy super.epic); # https://github.com/ekmett/wl-pprint-terminfo/issues/7 - wl-pprint-terminfo = addExtraLibrary super.wl-pprint-terminfo pkgs.ncurses; + wl-pprint-terminfo = addExtraLibrary pkgs.ncurses super.wl-pprint-terminfo; # https://github.com/bos/pcap/issues/5 - pcap = addExtraLibrary super.pcap pkgs.libpcap; + pcap = addExtraLibrary pkgs.libpcap super.pcap; # https://github.com/NixOS/nixpkgs/issues/53336 - greenclip = addExtraLibrary super.greenclip pkgs.xorg.libXdmcp; + greenclip = addExtraLibrary pkgs.xorg.libXdmcp super.greenclip; # The cabal files for these libraries do not list the required system dependencies. - miniball = overrideCabal super.miniball (drv: { + miniball = overrideCabal (drv: { librarySystemDepends = [ pkgs.miniball ]; - }); - SDL-image = overrideCabal super.SDL-image (drv: { + }) super.miniball; + SDL-image = overrideCabal (drv: { librarySystemDepends = [ pkgs.SDL pkgs.SDL_image ] ++ drv.librarySystemDepends or []; - }); - SDL-ttf = overrideCabal super.SDL-ttf (drv: { + }) super.SDL-image; + SDL-ttf = overrideCabal (drv: { librarySystemDepends = [ pkgs.SDL pkgs.SDL_ttf ]; - }); - SDL-mixer = overrideCabal super.SDL-mixer (drv: { + }) super.SDL-ttf; + SDL-mixer = overrideCabal (drv: { librarySystemDepends = [ pkgs.SDL pkgs.SDL_mixer ]; - }); - SDL-gfx = overrideCabal super.SDL-gfx (drv: { + }) super.SDL-mixer; + SDL-gfx = overrideCabal (drv: { librarySystemDepends = [ pkgs.SDL pkgs.SDL_gfx ]; - }); - SDL-mpeg = overrideCabal super.SDL-mpeg (drv: { + }) super.SDL-gfx; + SDL-mpeg = overrideCabal (drv: { configureFlags = (drv.configureFlags or []) ++ [ "--extra-lib-dirs=${pkgs.smpeg}/lib" "--extra-include-dirs=${pkgs.smpeg}/include/smpeg" ]; - }); + }) super.SDL-mpeg; # https://github.com/ivanperez-keera/hcwiid/pull/4 - hcwiid = overrideCabal super.hcwiid (drv: { + hcwiid = overrideCabal (drv: { configureFlags = (drv.configureFlags or []) ++ [ "--extra-lib-dirs=${pkgs.bluez.out}/lib" "--extra-lib-dirs=${pkgs.cwiid}/lib" @@ -332,16 +332,16 @@ self: super: builtins.intersectAttrs super { "--extra-include-dirs=${pkgs.bluez.dev}/include" ]; prePatch = '' sed -i -e "/Extra-Lib-Dirs/d" -e "/Include-Dirs/d" "hcwiid.cabal" ''; - }); + }) super.hcwiid; # cabal2nix doesn't pick up some of the dependencies. ginsu = let - g = addBuildDepend super.ginsu pkgs.perl; - g' = overrideCabal g (drv: { + g = addBuildDepend pkgs.perl super.ginsu; + g' = overrideCabal (drv: { executableSystemDepends = (drv.executableSystemDepends or []) ++ [ pkgs.ncurses ]; - }); + }) g; in g'; # Tests require `docker` command in PATH @@ -349,23 +349,23 @@ self: super: builtins.intersectAttrs super { docker = dontCheck super.docker; # https://github.com/deech/fltkhs/issues/16 - fltkhs = overrideCabal super.fltkhs (drv: { + fltkhs = overrideCabal (drv: { libraryToolDepends = (drv.libraryToolDepends or []) ++ [pkgs.buildPackages.autoconf]; librarySystemDepends = (drv.librarySystemDepends or []) ++ [pkgs.fltk13 pkgs.libGL pkgs.libjpeg]; - }); + }) super.fltkhs; # https://github.com/skogsbaer/hscurses/pull/26 - hscurses = overrideCabal super.hscurses (drv: { + hscurses = overrideCabal (drv: { librarySystemDepends = (drv.librarySystemDepends or []) ++ [ pkgs.ncurses ]; - }); + }) super.hscurses; # Looks like Avahi provides the missing library dnssd = super.dnssd.override { dns_sd = pkgs.avahi.override { withLibdnssdCompat = true; }; }; # tests depend on executable - ghcide = overrideCabal super.ghcide (drv: { + ghcide = overrideCabal (drv: { preCheck = ''export PATH="$PWD/dist/build/ghcide:$PATH"''; - }); + }) super.ghcide; # GLUT uses `dlopen` to link to freeglut, so we need to set the RUNPATH correctly for # it to find `libglut.so` from the nix store. We do this by patching GLUT.cabal to pkg-config @@ -377,22 +377,22 @@ self: super: builtins.intersectAttrs super { # # Additional note: nixpkgs' freeglut and macOS's OpenGL implementation do not cooperate, # so disable this on Darwin only - ${if pkgs.stdenv.isDarwin then null else "GLUT"} = addPkgconfigDepend (appendPatch super.GLUT ./patches/GLUT.patch) pkgs.freeglut; + ${if pkgs.stdenv.isDarwin then null else "GLUT"} = addPkgconfigDepend pkgs.freeglut (appendPatch ./patches/GLUT.patch super.GLUT); - libsystemd-journal = overrideCabal super.libsystemd-journal (old: { + libsystemd-journal = overrideCabal (old: { librarySystemDepends = old.librarySystemDepends or [] ++ [ pkgs.systemd ]; - }); + }) super.libsystemd-journal; # does not specify tests in cabal file, instead has custom runTest cabal hook, # so cabal2nix will not detect test dependencies. - either-unwrap = overrideCabal super.either-unwrap (drv: { + either-unwrap = overrideCabal (drv: { testHaskellDepends = (drv.testHaskellDepends or []) ++ [ self.test-framework self.test-framework-hunit ]; - }); + }) super.either-unwrap; # https://github.com/haskell-fswatch/hfsnotify/issues/62 fsnotify = dontCheck super.fsnotify; - hidapi = addExtraLibrary super.hidapi pkgs.udev; + hidapi = addExtraLibrary pkgs.udev super.hidapi; hs-GeoIP = super.hs-GeoIP.override { GeoIP = pkgs.geoipWithDatabase; }; @@ -402,45 +402,45 @@ self: super: builtins.intersectAttrs super { stackage-curator = dontCheck super.stackage-curator; # hardcodes /usr/bin/tr: https://github.com/snapframework/io-streams/pull/59 - io-streams = enableCabalFlag super.io-streams "NoInteractiveTests"; + io-streams = enableCabalFlag "NoInteractiveTests" super.io-streams; # requires autotools to build - secp256k1 = addBuildTools super.secp256k1 [ pkgs.buildPackages.autoconf pkgs.buildPackages.automake pkgs.buildPackages.libtool ]; + secp256k1 = addBuildTools [ pkgs.buildPackages.autoconf pkgs.buildPackages.automake pkgs.buildPackages.libtool ] super.secp256k1; # requires libsecp256k1 in pkg-config-depends - secp256k1-haskell = addPkgconfigDepend super.secp256k1-haskell pkgs.secp256k1; + secp256k1-haskell = addPkgconfigDepend pkgs.secp256k1 super.secp256k1-haskell; # tests require git and zsh - hapistrano = addBuildTools super.hapistrano [ pkgs.buildPackages.git pkgs.buildPackages.zsh ]; + hapistrano = addBuildTools [ pkgs.buildPackages.git pkgs.buildPackages.zsh ] super.hapistrano; # This propagates this to everything depending on haskell-gi-base - haskell-gi-base = addBuildDepend super.haskell-gi-base pkgs.gobject-introspection; + haskell-gi-base = addBuildDepend pkgs.gobject-introspection super.haskell-gi-base; # requires valid, writeable $HOME - hatex-guide = overrideCabal super.hatex-guide (drv: { + hatex-guide = overrideCabal (drv: { preConfigure = '' ${drv.preConfigure or ""} export HOME=$PWD ''; - }); + }) super.hatex-guide; # https://github.com/plow-technologies/servant-streaming/issues/12 servant-streaming-server = dontCheck super.servant-streaming-server; # https://github.com/haskell-servant/servant/pull/1238 servant-client-core = if (pkgs.lib.getVersion super.servant-client-core) == "0.16" then - appendPatch super.servant-client-core ./patches/servant-client-core-redact-auth-header.patch + appendPatch ./patches/servant-client-core-redact-auth-header.patch super.servant-client-core else super.servant-client-core; # tests run executable, relying on PATH # without this, tests fail with "Couldn't launch intero process" - intero = overrideCabal super.intero (drv: { + intero = overrideCabal (drv: { preCheck = '' export PATH="$PWD/dist/build/intero:$PATH" ''; - }); + }) super.intero; # Break infinite recursion cycle with criterion and network-uri. js-flot = dontCheck super.js-flot; @@ -470,23 +470,23 @@ self: super: builtins.intersectAttrs super { liquidhaskell = dontCheck (disableSharedExecutables super.liquidhaskell); # Without this override, the builds lacks pkg-config. - opencv-extra = addPkgconfigDepend super.opencv-extra pkgs.opencv3; + opencv-extra = addPkgconfigDepend pkgs.opencv3 super.opencv-extra; # Break cyclic reference that results in an infinite recursion. partial-semigroup = dontCheck super.partial-semigroup; colour = dontCheck super.colour; spatial-rotations = dontCheck super.spatial-rotations; - LDAP = dontCheck (overrideCabal super.LDAP (drv: { + LDAP = dontCheck (overrideCabal (drv: { librarySystemDepends = drv.librarySystemDepends or [] ++ [ pkgs.cyrus_sasl.dev ]; - })); + }) super.LDAP); # Expects z3 to be on path so we replace it with a hard # # The tests expect additional solvers on the path, replace the # available ones also with hard coded paths, and remove the missing # ones from the test. - sbv = overrideCabal super.sbv (drv: { + sbv = overrideCabal (drv: { postPatch = '' sed -i -e 's|"abc"|"${pkgs.abc-verifier}/bin/abc"|' Data/SBV/Provers/ABC.hs sed -i -e 's|"boolector"|"${pkgs.boolector}/bin/boolector"|' Data/SBV/Provers/Boolector.hs @@ -496,14 +496,14 @@ self: super: builtins.intersectAttrs super { sed -i -e 's|\[abc, boolector, cvc4, mathSAT, yices, z3, dReal\]|[abc, boolector, cvc4, yices, z3]|' SBVTestSuite/SBVConnectionTest.hs ''; - }); + }) super.sbv; # The test-suite requires a running PostgreSQL server. Frames-beam = dontCheck super.Frames-beam; # Compile manpages (which are in RST and are compiled with Sphinx). futhark = - overrideCabal (addBuildTools super.futhark (with pkgs.buildPackages; [makeWrapper python3Packages.sphinx])) + overrideCabal (_drv: { postBuild = (_drv.postBuild or "") + '' make -C docs man @@ -513,12 +513,13 @@ self: super: builtins.intersectAttrs super { mkdir -p $out/share/man/man1 mv docs/_build/man/*.1 $out/share/man/man1/ ''; - }); + }) + (addBuildTools (with pkgs.buildPackages; [makeWrapper python3Packages.sphinx]) super.futhark); git-annex = with pkgs; if (!stdenv.isLinux) then let path = lib.makeBinPath [ coreutils ]; - in overrideCabal (addBuildTool super.git-annex buildPackages.makeWrapper) (_drv: { + in overrideCabal (_drv: { # This is an instance of https://github.com/NixOS/nix/pull/1085 # Fails with: # gpg: can't connect to the agent: File name too long @@ -532,7 +533,7 @@ self: super: builtins.intersectAttrs super { wrapProgram $out/bin/git-annex \ --prefix PATH : "${path}" ''; - }) + }) (addBuildTool buildPackages.makeWrapper super.git-annex) else super.git-annex; # The test suite has undeclared dependencies on git. @@ -559,8 +560,8 @@ self: super: builtins.intersectAttrs super { # gtk2hs-buildtools is listed in setupHaskellDepends, but we # need it during the build itself, too. - cairo = addBuildTool super.cairo self.buildHaskellPackages.gtk2hs-buildtools; - pango = disableHardening (addBuildTool super.pango self.buildHaskellPackages.gtk2hs-buildtools) ["fortify"]; + cairo = addBuildTool self.buildHaskellPackages.gtk2hs-buildtools super.cairo; + pango = disableHardening ["fortify"] (addBuildTool self.buildHaskellPackages.gtk2hs-buildtools super.pango); spago = let @@ -584,7 +585,7 @@ self: super: builtins.intersectAttrs super { sha256 = "1hjdprm990vyxz86fgq14ajn0lkams7i00h8k2i2g1a0hjdwppq6"; }; - spagoWithPatches = appendPatch super.spago ( + spagoWithPatches = appendPatch ( # Spago needs a small patch to work with versions-5.0.0: # https://github.com/purescript/spago/pull/798 # This can probably be removed with >spago-0.20.3. @@ -592,14 +593,14 @@ self: super: builtins.intersectAttrs super { url = "https://github.com/purescript/spago/commit/dd4bf4413d9675c1c8065d24d0ed7b345c7fa5dd.patch"; sha256 = "1i1r3f4n9mlkckx15bfrdy5m7gjf0zx7ycwyqra6qn34zpcbzpmf"; } - ); + ) super.spago; spagoWithOverrides = spagoWithPatches.override { # spago has not yet been updated for the latest dhall. dhall = self.dhall_1_38_1; }; - spagoDocs = overrideCabal spagoWithOverrides (drv: { + spagoDocs = overrideCabal (drv: { postUnpack = (drv.postUnpack or "") + '' # Spago includes the following two files directly into the binary # with Template Haskell. They are fetched at build-time from the @@ -624,7 +625,7 @@ self: super: builtins.intersectAttrs super { "$sourceRoot/templates/docs-search-app-0.0.11.js" \ "$sourceRoot/templates/purescript-docs-search-0.0.11" ''; - }); + }) spagoWithOverrides; # Tests require network access. spagoWithoutChecks = dontCheck spagoDocs; @@ -638,11 +639,11 @@ self: super: builtins.intersectAttrs super { # mplayer-spot uses mplayer at runtime. mplayer-spot = let path = pkgs.lib.makeBinPath [ pkgs.mplayer ]; - in overrideCabal (addBuildTool super.mplayer-spot pkgs.buildPackages.makeWrapper) (oldAttrs: { + in overrideCabal (oldAttrs: { postInstall = '' wrapProgram $out/bin/mplayer-spot --prefix PATH : "${path}" ''; - }); + }) (addBuildTool pkgs.buildPackages.makeWrapper super.mplayer-spot); # break infinite recursion with base-orphans primitive = dontCheck super.primitive; @@ -650,12 +651,12 @@ self: super: builtins.intersectAttrs super { cut-the-crap = let path = pkgs.lib.makeBinPath [ pkgs.ffmpeg pkgs.youtube-dl ]; - in overrideCabal (addBuildTool super.cut-the-crap pkgs.buildPackages.makeWrapper) (_drv: { + in overrideCabal (_drv: { postInstall = '' wrapProgram $out/bin/cut-the-crap \ --prefix PATH : "${path}" ''; - }); + }) (addBuildTool pkgs.buildPackages.makeWrapper super.cut-the-crap); # Tests access homeless-shelter. hie-bios = dontCheck super.hie-bios; @@ -663,9 +664,9 @@ self: super: builtins.intersectAttrs super { # Compiling the readme throws errors and has no purpose in nixpkgs aeson-gadt-th = - disableCabalFlag (doJailbreak (super.aeson-gadt-th)) "build-readme"; + disableCabalFlag "build-readme" (doJailbreak super.aeson-gadt-th); - neuron = overrideCabal (super.neuron) (drv: { + neuron = overrideCabal (drv: { # neuron expects the neuron-search script to be in PATH at built-time. buildTools = [ pkgs.buildPackages.makeWrapper ]; preConfigure = '' @@ -678,14 +679,14 @@ self: super: builtins.intersectAttrs super { } PATH=$PATH:$out/bin ''; - }); + }) super.neuron; # Fix compilation of Setup.hs by removing the module declaration. # See: https://github.com/tippenein/guid/issues/1 - guid = overrideCabal (super.guid) (drv: { + guid = overrideCabal (drv: { prePatch = "sed -i '1d' Setup.hs"; # 1st line is module declaration, remove it doCheck = false; - }); + }) super.guid; # Tests disabled as recommended at https://github.com/luke-clifton/shh/issues/39 shh = dontCheck super.shh; @@ -696,16 +697,16 @@ self: super: builtins.intersectAttrs super { postgresql-libpq-notify = dontCheck super.postgresql-libpq-notify; postgresql-pure = dontCheck super.postgresql-pure; - retrie = overrideCabal super.retrie (drv: { + retrie = overrideCabal (drv: { testToolDepends = [ pkgs.git pkgs.mercurial ]; - }); + }) super.retrie; - nix-output-monitor = overrideCabal super.nix-output-monitor { + nix-output-monitor = overrideCabal { # Can't ran the golden-tests with nix, because they call nix testTarget = "unit-tests"; - }; + } super.nix-output-monitor; - haskell-language-server = overrideCabal super.haskell-language-server (drv: { + haskell-language-server = overrideCabal (drv: { postInstall = "ln -s $out/bin/haskell-language-server $out/bin/haskell-language-server-${self.ghc.version}"; testToolDepends = [ self.cabal-install pkgs.git ]; testTarget = "func-test"; # wrapper test accesses internet @@ -713,14 +714,14 @@ self: super: builtins.intersectAttrs super { export PATH=$PATH:$PWD/dist/build/haskell-language-server:$PWD/dist/build/haskell-language-server-wrapper export HOME=$TMPDIR ''; - }); + }) super.haskell-language-server; # tests depend on a specific version of solc hevm = dontCheck (doJailbreak super.hevm); # hadolint enables static linking by default in the cabal file, so we have to explicitly disable it. # https://github.com/hadolint/hadolint/commit/e1305042c62d52c2af4d77cdce5d62f6a0a3ce7b - hadolint = disableCabalFlag super.hadolint "static"; + hadolint = disableCabalFlag "static" super.hadolint; # Test suite tries to execute the build product "doctest-driver-gen", but it's not in $PATH. doctest-driver-gen = dontCheck super.doctest-driver-gen; @@ -729,7 +730,7 @@ self: super: builtins.intersectAttrs super { prune-juice = dontCheck super.prune-juice; # based on https://github.com/gibiansky/IHaskell/blob/aafeabef786154d81ab7d9d1882bbcd06fc8c6c4/release.nix - ihaskell = overrideCabal super.ihaskell (drv: { + ihaskell = overrideCabal (drv: { configureFlags = (drv.configureFlags or []) ++ [ # ihaskell's cabal file forces building a shared executable, # but without passing --enable-executable-dynamic, the RPATH @@ -741,152 +742,152 @@ self: super: builtins.intersectAttrs super { export PATH=$PWD/dist/build/ihaskell:$PATH export GHC_PACKAGE_PATH=$PWD/dist/package.conf.inplace/:$GHC_PACKAGE_PATH ''; - }); + }) super.ihaskell; # tests need to execute the built executable - stutter = overrideCabal super.stutter (drv: { + stutter = overrideCabal (drv: { preCheck = '' export PATH=dist/build/stutter:$PATH '' + (drv.preCheck or ""); - }); + }) super.stutter; # Install man page and generate shell completions pinboard-notes-backup = overrideCabal - (generateOptparseApplicativeCompletion "pnbackup" super.pinboard-notes-backup) (drv: { postInstall = '' install -D man/pnbackup.1 $out/share/man/man1/pnbackup.1 '' + (drv.postInstall or ""); - }); + }) + (generateOptparseApplicativeCompletion "pnbackup" super.pinboard-notes-backup); # set more accurate set of platforms instead of maintaining # an ever growing list of platforms to exclude via unsupported-platforms - cpuid = overrideCabal super.cpuid { + cpuid = overrideCabal { platforms = pkgs.lib.platforms.x86; - }; + } super.cpuid; # Pass the correct libarchive into the package. streamly-archive = super.streamly-archive.override { archive = pkgs.libarchive; }; # passes the -msse2 flag which only works on x86 platforms - hsignal = overrideCabal super.hsignal { + hsignal = overrideCabal { platforms = pkgs.lib.platforms.x86; - }; + } super.hsignal; # uses x86 intrinsics - blake3 = overrideCabal super.blake3 { + blake3 = overrideCabal { platforms = pkgs.lib.platforms.x86; - }; + } super.blake3; # uses x86 intrinsics, see also https://github.com/NixOS/nixpkgs/issues/122014 - crc32c = overrideCabal super.crc32c { + crc32c = overrideCabal { platforms = pkgs.lib.platforms.x86; - }; + } super.crc32c; # uses x86 intrinsics - seqalign = overrideCabal super.seqalign { + seqalign = overrideCabal { platforms = pkgs.lib.platforms.x86; - }; + } super.seqalign; # uses x86 intrinsics - geomancy = overrideCabal super.geomancy { + geomancy = overrideCabal { platforms = pkgs.lib.platforms.x86; - }; + } super.geomancy; - hls-brittany-plugin = overrideCabal super.hls-brittany-plugin (drv: { + hls-brittany-plugin = overrideCabal (drv: { testToolDepends = [ pkgs.git ]; preCheck = '' export HOME=$TMPDIR/home ''; - }); - hls-class-plugin = overrideCabal super.hls-class-plugin (drv: { + }) super.hls-brittany-plugin; + hls-class-plugin = overrideCabal (drv: { testToolDepends = [ pkgs.git ]; preCheck = '' export HOME=$TMPDIR/home ''; - }); - hls-ormolu-plugin = overrideCabal super.hls-ormolu-plugin (drv: { + }) super.hls-class-plugin; + hls-ormolu-plugin = overrideCabal (drv: { testToolDepends = [ pkgs.git ]; preCheck = '' export HOME=$TMPDIR/home ''; - }); - hls-fourmolu-plugin = overrideCabal super.hls-fourmolu-plugin (drv: { + }) super.hls-ormolu-plugin; + hls-fourmolu-plugin = overrideCabal (drv: { testToolDepends = [ pkgs.git ]; preCheck = '' export HOME=$TMPDIR/home ''; - }); - hls-module-name-plugin = overrideCabal super.hls-module-name-plugin (drv: { + }) super.hls-fourmolu-plugin; + hls-module-name-plugin = overrideCabal (drv: { testToolDepends = [ pkgs.git ]; preCheck = '' export HOME=$TMPDIR/home ''; - }); - hls-rename-plugin = overrideCabal super.hls-rename-plugin (drv: { + }) super.hls-module-name-plugin; + hls-rename-plugin = overrideCabal (drv: { testToolDepends = [ pkgs.git ]; preCheck = '' export HOME=$TMPDIR/home '' + (drv.preCheck or ""); - }); - hls-splice-plugin = overrideCabal super.hls-splice-plugin (drv: { + }) super.hls-rename-plugin; + hls-splice-plugin = overrideCabal (drv: { testToolDepends = [ pkgs.git ]; preCheck = '' export HOME=$TMPDIR/home ''; - }); - hls-floskell-plugin = overrideCabal super.hls-floskell-plugin (drv: { + }) super.hls-splice-plugin; + hls-floskell-plugin = overrideCabal (drv: { testToolDepends = [ pkgs.git ]; preCheck = '' export HOME=$TMPDIR/home ''; - }); - hls-pragmas-plugin = overrideCabal super.hls-pragmas-plugin (drv: { + }) super.hls-floskell-plugin; + hls-pragmas-plugin = overrideCabal (drv: { testToolDepends = [ pkgs.git ]; preCheck = '' export HOME=$TMPDIR/home ''; - }); - hiedb = overrideCabal super.hiedb (drv: { + }) super.hls-pragmas-plugin; + hiedb = overrideCabal (drv: { preCheck = '' export PATH=$PWD/dist/build/hiedb:$PATH ''; - }); - hls-call-hierarchy-plugin = overrideCabal super.hls-call-hierarchy-plugin (drv: { + }) super.hiedb; + hls-call-hierarchy-plugin = overrideCabal (drv: { preCheck = '' export HOME=$TMPDIR/home ''; - }); + }) super.hls-call-hierarchy-plugin; # Tests have file permissions expections that don‘t work with the nix store. hls-stylish-haskell-plugin = dontCheck super.hls-stylish-haskell-plugin; - hls-haddock-comments-plugin = overrideCabal super.hls-haddock-comments-plugin (drv: { + hls-haddock-comments-plugin = overrideCabal (drv: { testToolDepends = [ pkgs.git ]; preCheck = '' export HOME=$TMPDIR/home ''; - }); - hls-eval-plugin = overrideCabal super.hls-eval-plugin (drv: { + }) super.hls-haddock-comments-plugin; + hls-eval-plugin = overrideCabal (drv: { testToolDepends = [ pkgs.git ]; preCheck = '' export HOME=$TMPDIR/home ''; - }); + }) super.hls-eval-plugin; - taglib = overrideCabal super.taglib (drv: { + taglib = overrideCabal (drv: { librarySystemDepends = [ pkgs.zlib ] ++ (drv.librarySystemDepends or []); - }); + }) super.taglib; # uses x86 assembler - inline-asm = overrideCabal super.inline-asm { + inline-asm = overrideCabal { platforms = pkgs.lib.platforms.x86; - }; + } super.inline-asm; # uses x86 assembler in C bits - hw-prim-bits = overrideCabal super.hw-prim-bits { + hw-prim-bits = overrideCabal { platforms = pkgs.lib.platforms.x86; - }; + } super.hw-prim-bits; # random 1.2.0 has tests that indirectly depend on # itself causing an infinite recursion at evaluation @@ -897,7 +898,6 @@ self: super: builtins.intersectAttrs super { # not used to link against by anyone, we can make it’s closure smaller and # add its runtime dependencies in `haskellPackages` (as opposed to cabal2nix). cabal2nix-unstable = overrideCabal - (justStaticExecutables super.cabal2nix-unstable) (drv: { buildTools = (drv.buildTools or []) ++ [ pkgs.buildPackages.makeWrapper @@ -908,21 +908,22 @@ self: super: builtins.intersectAttrs super { pkgs.lib.makeBinPath [ pkgs.nix pkgs.nix-prefetch-scripts ] }" ''; - }); + }) + (justStaticExecutables super.cabal2nix-unstable); # test suite needs local redis daemon nri-redis = dontCheck super.nri-redis; # Make tophat find itself for _compiling_ its test suite - tophat = overrideCabal super.tophat (drv: { + tophat = overrideCabal (drv: { postPatch = '' sed -i 's|"tophat"|"./dist/build/tophat/tophat"|' app-test-bin/*.hs '' + (drv.postPatch or ""); - }); + }) super.tophat; # Runtime dependencies and CLI completion nvfetcher = generateOptparseApplicativeCompletion "nvfetcher" (overrideCabal - super.nvfetcher (drv: { + (drv: { # test needs network doCheck = false; buildTools = drv.buildTools or [ ] ++ [ pkgs.buildPackages.makeWrapper ]; @@ -931,16 +932,20 @@ self: super: builtins.intersectAttrs super { pkgs.lib.makeBinPath [ pkgs.nvchecker pkgs.nix-prefetch-git ] }" ''; - })); + }) super.nvfetcher); - rel8 = addTestToolDepend super.rel8 pkgs.postgresql; + rel8 = addTestToolDepend pkgs.postgresql super.rel8; - cachix = generateOptparseApplicativeCompletion "cachix" super.cachix; + cachix = generateOptparseApplicativeCompletion "cachix" (super.cachix.override { nix = pkgs.nix_2_3; }); + + hercules-ci-agent = super.hercules-ci-agent.override { nix = pkgs.nix_2_3; }; + hercules-ci-cnix-expr = super.hercules-ci-cnix-expr.override { nix = pkgs.nix_2_3; }; + hercules-ci-cnix-store = super.hercules-ci-cnix-store.override { nix = pkgs.nix_2_3; }; # Enable extra optimisations which increase build time, but also # later compiler performance, so we should do this for user's benefit. # Flag added in Agda 2.6.2 - Agda = appendConfigureFlag super.Agda "-foptimise-heavily"; + Agda = appendConfigureFlag "-foptimise-heavily" super.Agda; # ats-format uses cli-setup in Setup.hs which is quite happy to write # to arbitrary files in $HOME. This doesn't either not achieve anything @@ -948,7 +953,7 @@ self: super: builtins.intersectAttrs super { # See also: https://hackage.haskell.org/package/cli-setup-0.2.1.4/docs/src/Distribution.CommandLine.html#setManpathGeneric ats-format = generateOptparseApplicativeCompletion "atsfmt" ( justStaticExecutables ( - overrideCabal super.ats-format (drv: { + overrideCabal (drv: { # use vanilla Setup.hs preCompileBuildDriver = '' cat > Setup.hs << EOF @@ -964,7 +969,7 @@ self: super: builtins.intersectAttrs super { postInstall = '' installManPage man/atsfmt.1 '' + (drv.postInstall or ""); - }) + }) super.ats-format ) ); @@ -974,10 +979,10 @@ self: super: builtins.intersectAttrs super { # Some hash implementations are x86 only, but part of the test suite. # So executing and building it on non-x86 platforms will always fail. - hashes = overrideCabal super.hashes { + hashes = overrideCabal { doCheck = with pkgs.stdenv; hostPlatform == buildPlatform && buildPlatform.isx86; - }; + } super.hashes; # procex relies on close_range which has been introduced in Linux 5.9, # the test suite seems to force the use of this feature (or the fallback @@ -985,7 +990,7 @@ self: super: builtins.intersectAttrs super { # Kernel < 5.9. To check for this, we use uname -r to obtain the Kernel # version and sort -V to compare against our minimum version. If the # Kernel turns out to be older, we disable the test suite. - procex = overrideCabal super.procex (drv: { + procex = overrideCabal (drv: { postConfigure = '' minimumKernel=5.9 higherVersion=`printf "%s\n%s\n" "$minimumKernel" "$(uname -r)" | sort -rV | head -n1` @@ -994,5 +999,5 @@ self: super: builtins.intersectAttrs super { unset doCheck fi '' + (drv.postConfigure or ""); - }); + }) super.procex; } diff --git a/pkgs/development/haskell-modules/configuration-tensorflow.nix b/pkgs/development/haskell-modules/configuration-tensorflow.nix index 4848cb6111f0..31c679f9b842 100644 --- a/pkgs/development/haskell-modules/configuration-tensorflow.nix +++ b/pkgs/development/haskell-modules/configuration-tensorflow.nix @@ -17,7 +17,7 @@ let }; setTensorflowSourceRoot = dir: drv: - (overrideCabal drv (drv: { src = tensorflow-haskell; })) + (overrideCabal (drv: { src = tensorflow-haskell; }) drv) .overrideAttrs (_oldAttrs: {sourceRoot = "source/${dir}";}); in { diff --git a/pkgs/development/haskell-modules/generic-builder.nix b/pkgs/development/haskell-modules/generic-builder.nix index e76f5012f957..d8137038f63c 100644 --- a/pkgs/development/haskell-modules/generic-builder.nix +++ b/pkgs/development/haskell-modules/generic-builder.nix @@ -56,6 +56,7 @@ in , mainProgram ? null , doCoverage ? false , doHaddock ? !(ghc.isHaLVM or false) +, doHaddockInterfaces ? doHaddock && lib.versionAtLeast ghc.version "9.0.1" , passthru ? {} , pkg-configDepends ? [], libraryPkgconfigDepends ? [], executablePkgconfigDepends ? [], testPkgconfigDepends ? [], benchmarkPkgconfigDepends ? [] , testDepends ? [], testHaskellDepends ? [], testSystemDepends ? [], testFrameworkDepends ? [] @@ -226,7 +227,11 @@ let ] ++ optionals isCross ([ "--configure-option=--host=${stdenv.hostPlatform.config}" ] ++ crossCabalFlags - ) ++ optionals enableSeparateBinOutput ["--bindir=${binDir}"]; + ) ++ optionals enableSeparateBinOutput [ + "--bindir=${binDir}" + ] ++ optionals (doHaddockInterfaces && isLibrary) [ + "--ghc-options=-haddock" + ]; setupCompileFlags = [ (optionalString (!coreSetup) "-${nativePackageDbFlag}=$setupPackageConfDir") diff --git a/pkgs/development/haskell-modules/hackage-packages.nix b/pkgs/development/haskell-modules/hackage-packages.nix index 41aa5edcdd06..93fb82954d57 100644 --- a/pkgs/development/haskell-modules/hackage-packages.nix +++ b/pkgs/development/haskell-modules/hackage-packages.nix @@ -948,15 +948,15 @@ self: { }) {}; "Allure" = callPackage - ({ mkDerivation, async, base, containers, enummapset, file-embed - , filepath, ghc-compact, hsini, LambdaHack, optparse-applicative - , primitive, splitmix, tasty, tasty-hunit, template-haskell, text + ({ mkDerivation, async, base, enummapset, file-embed, filepath + , ghc-compact, hsini, LambdaHack, optparse-applicative, primitive + , splitmix, tasty, tasty-hunit, template-haskell, text , th-lift-instances, transformers }: mkDerivation { pname = "Allure"; - version = "0.10.2.0"; - sha256 = "1x62ny9h51x1rl17khgjyy5idl94fr7h1vhfm5zjgls3ln7g7fgw"; + version = "0.10.3.0"; + sha256 = "1p2g87rhqwm2hji32cp3swk9p0kl703nhaswv5z69wmzz2yzzqqa"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -968,8 +968,7 @@ self: { async base filepath LambdaHack optparse-applicative ]; testHaskellDepends = [ - async base containers filepath LambdaHack optparse-applicative - tasty tasty-hunit text transformers + base LambdaHack optparse-applicative tasty tasty-hunit text ]; description = "Near-future Sci-Fi roguelike and tactical squad combat game"; license = lib.licenses.agpl3Plus; @@ -3132,8 +3131,8 @@ self: { }: mkDerivation { pname = "ChasingBottoms"; - version = "1.3.1.10"; - sha256 = "1flr56hd8ny0ddlv1agi0ikdjv5wgx0aba6xqdsn3nv6dyw9nbf3"; + version = "1.3.1.11"; + sha256 = "162lykrhhnj7i3l0kfzk2jwgjkdrqwamvxwf8g3hr042rqr1qywp"; libraryHaskellDepends = [ base containers mtl QuickCheck random syb ]; @@ -3351,25 +3350,6 @@ self: { }) {inherit (pkgs) libdevil;}; "Color" = callPackage - ({ mkDerivation, base, colour, criterion, data-default-class - , deepseq, doctest, hspec, HUnit, JuicyPixels, massiv, massiv-test - , QuickCheck, random, vector - }: - mkDerivation { - pname = "Color"; - version = "0.3.2"; - sha256 = "1v5x32jas70sfqy90brjqlfsy816ar9mcbr3i1lviqivzq7agshk"; - libraryHaskellDepends = [ base data-default-class deepseq vector ]; - testHaskellDepends = [ - base colour doctest hspec HUnit JuicyPixels massiv massiv-test - QuickCheck random vector - ]; - benchmarkHaskellDepends = [ base colour criterion deepseq random ]; - description = "Color spaces and conversions between them"; - license = lib.licenses.bsd3; - }) {}; - - "Color_0_3_3" = callPackage ({ mkDerivation, base, colour, criterion, data-default-class , deepseq, hspec, hspec-discover, HUnit, JuicyPixels, massiv , massiv-test, QuickCheck, random, vector @@ -3387,7 +3367,6 @@ self: { benchmarkHaskellDepends = [ base colour criterion deepseq random ]; description = "Color spaces and conversions between them"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "Combinatorrent" = callPackage @@ -8748,10 +8727,8 @@ self: { }: mkDerivation { pname = "HList"; - version = "0.5.0.0"; - sha256 = "16qf076p66caf3cabajbz0lgqzffqzcg0jr6lb4af18kpnpq4zqb"; - revision = "1"; - editedCabalFile = "0hxc725laxdz2gy18bf0rwzaxsqvl8a54v7r1ghy19q1ipp0nykx"; + version = "0.5.1.0"; + sha256 = "0dpyv9qfkr8w8q19kxyzk9nph8zdhdcnaw3w0b09cishcs47jrgw"; enableSeparateDataOutput = true; libraryHaskellDepends = [ array base base-orphans ghc-prim mtl profunctors semigroups tagged @@ -9784,8 +9761,8 @@ self: { }: mkDerivation { pname = "HaXml"; - version = "1.25.6"; - sha256 = "13idysjh6bqkcgzg0rbgd1cm6knapzbkf44rsnyvrfd0r8kja8gr"; + version = "1.25.7"; + sha256 = "111cmrviw8d4cywyka4l0ni5ldi7y6m1nl8fcyjxh54b859c3bsn"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -11195,8 +11172,8 @@ self: { }: mkDerivation { pname = "IPv6Addr"; - version = "2.0.2"; - sha256 = "0r712250lv8brgy3ysdyj41snl0qbsx9h0p853w8n1aif0fsnxkw"; + version = "2.0.3"; + sha256 = "1j7n9xf808nc5pvs5klvnq0a7v68rzpr8zq7vls49z2prwhwbfil"; libraryHaskellDepends = [ aeson attoparsec base iproute network network-info random text ]; @@ -11527,6 +11504,7 @@ self: { description = "JSON parser that uses byte strings"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "JYU-Utils" = callPackage @@ -11715,22 +11693,6 @@ self: { }) {}; "JuicyPixels" = callPackage - ({ mkDerivation, base, binary, bytestring, containers, deepseq, mtl - , primitive, transformers, vector, zlib - }: - mkDerivation { - pname = "JuicyPixels"; - version = "3.3.5"; - sha256 = "0yj4jyf56r3c1r3v1lkx8i8ll0jl8g8y2yv87sa4hwgck52199gc"; - libraryHaskellDepends = [ - base binary bytestring containers deepseq mtl primitive - transformers vector zlib - ]; - description = "Picture loading/serialization (in png, jpeg, bitmap, gif, tga, tiff and radiance)"; - license = lib.licenses.bsd3; - }) {}; - - "JuicyPixels_3_3_6" = callPackage ({ mkDerivation, base, binary, bytestring, containers, deepseq, mtl , primitive, transformers, vector, zlib }: @@ -11744,7 +11706,6 @@ self: { ]; description = "Picture loading/serialization (in png, jpeg, bitmap, gif, tga, tiff and radiance)"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "JuicyPixels-blp" = callPackage @@ -11754,8 +11715,8 @@ self: { }: mkDerivation { pname = "JuicyPixels-blp"; - version = "0.1.1.0"; - sha256 = "0vccx98n9bjnz2clpww4gqns7mc2cmzgpzmj2mx6mwhgb12rwbvx"; + version = "0.2.0.0"; + sha256 = "04wkqqzzwn2jr58dmyg6vhkl7z4016gzbkrvd54k94w6p5szkfpz"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -12361,39 +12322,44 @@ self: { description = "A type-safe EDSL for TouchDesigner written in Haskell"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "LambdaHack" = callPackage - ({ mkDerivation, assert-failure, async, base, base-compat, binary - , bytestring, containers, deepseq, directory, enummapset - , file-embed, filepath, ghc-compact, ghc-prim, hashable, hsini - , int-cast, keys, miniutter, open-browser, optparse-applicative - , pretty-show, primitive, sdl2, sdl2-ttf, splitmix, stm, tasty - , tasty-hunit, template-haskell, text, th-lift-instances, time + ({ mkDerivation, ansi-terminal, assert-failure, async, base + , base-compat, binary, bytestring, containers, deepseq, directory + , doctest, doctest-driver-gen, enummapset, file-embed, filepath + , ghc-compact, ghc-prim, hashable, hsini, keys, miniutter + , open-browser, optparse-applicative, pretty-show, primitive + , QuickCheck, sdl2, sdl2-ttf, splitmix, stm, tasty, tasty-hunit + , tasty-quickcheck, template-haskell, text, th-lift-instances, time , transformers, unordered-containers, vector - , vector-binary-instances, zlib + , vector-binary-instances, witch, zlib }: mkDerivation { pname = "LambdaHack"; - version = "0.10.2.0"; - sha256 = "1x02dym1kara8izmz2cpq1dppqbn8y655nwlw9anqs8c1haqd2kc"; + version = "0.10.3.0"; + sha256 = "06hijymhdcrb9jrxmyilj7rvqa6kyr5q9js9ah715c3jvd6nc5gj"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - assert-failure async base base-compat binary bytestring containers - deepseq directory enummapset file-embed filepath ghc-compact - ghc-prim hashable hsini int-cast keys miniutter open-browser - optparse-applicative pretty-show primitive sdl2 sdl2-ttf splitmix - stm template-haskell text th-lift-instances time transformers - unordered-containers vector vector-binary-instances zlib + ansi-terminal assert-failure async base base-compat binary + bytestring containers deepseq directory enummapset file-embed + filepath ghc-compact ghc-prim hashable hsini keys miniutter + open-browser optparse-applicative pretty-show primitive QuickCheck + sdl2 sdl2-ttf splitmix stm template-haskell text th-lift-instances + time transformers unordered-containers vector + vector-binary-instances witch zlib ]; executableHaskellDepends = [ async base filepath optparse-applicative ]; testHaskellDepends = [ - async base containers filepath optparse-applicative tasty - tasty-hunit text transformers + base containers doctest enummapset optparse-applicative QuickCheck + splitmix tasty tasty-hunit tasty-quickcheck text transformers + vector ]; + testToolDepends = [ doctest-driver-gen ]; description = "A game engine library for tactical squad ASCII roguelike dungeon crawlers"; license = lib.licenses.bsd3; platforms = [ @@ -13881,8 +13847,8 @@ self: { ({ mkDerivation, ansi-terminal, base, doctest, hspec, time }: mkDerivation { pname = "Monadoro"; - version = "0.2.5.0"; - sha256 = "0p3270xzwhq1j8m3mb4bvh95c4w16vrjj4cd0p87aq35xy99f4dr"; + version = "0.2.6.0"; + sha256 = "0ijiqwx8vy00l1aphbj2kjfdzycsj6hm5828liyj4qig6cr6l1zd"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ ansi-terminal base time ]; @@ -14280,8 +14246,8 @@ self: { }: mkDerivation { pname = "NanoID"; - version = "3.1.0"; - sha256 = "0f3sadmnwdqbvl86gdaqgzixgk4zly39afhc2m5mws1j18y9v738"; + version = "3.1.1"; + sha256 = "10zjp9675nxa7nx7qhr5cxw43fy06s5ggb39idlr87b90vm8wkw8"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -15050,6 +15016,21 @@ self: { license = lib.licenses.bsd3; }) {}; + "OneTuple_0_3_1" = callPackage + ({ mkDerivation, base, base-orphans, hashable, template-haskell }: + mkDerivation { + pname = "OneTuple"; + version = "0.3.1"; + sha256 = "1vry21z449ph9k61l5zm7mfmdwkwszxqdlawlhvwrd1gsn13d1cq"; + libraryHaskellDepends = [ + base base-orphans hashable template-haskell + ]; + testHaskellDepends = [ base hashable template-haskell ]; + description = "Singleton Tuple"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "Only" = callPackage ({ mkDerivation, base, deepseq }: mkDerivation { @@ -16406,6 +16387,27 @@ self: { license = lib.licenses.bsd3; }) {}; + "PyF_0_10_0_1" = callPackage + ({ mkDerivation, base, bytestring, deepseq, filepath, ghc, ghc-boot + , hspec, HUnit, mtl, parsec, process, template-haskell, temporary + , text, time + }: + mkDerivation { + pname = "PyF"; + version = "0.10.0.1"; + sha256 = "0bgnqjvrn3jrlc0jhldab44dsh64dn428rmqnxcvpr6aqvv2qk6k"; + libraryHaskellDepends = [ + base bytestring ghc ghc-boot mtl parsec template-haskell text time + ]; + testHaskellDepends = [ + base bytestring deepseq filepath hspec HUnit process + template-haskell temporary text time + ]; + description = "Quasiquotations for a python like interpolated string formatter"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "QIO" = callPackage ({ mkDerivation, base, containers, mtl, old-time, random }: mkDerivation { @@ -16556,11 +16558,12 @@ self: { ({ mkDerivation, base, hspec, QuickCheck }: mkDerivation { pname = "QuickCheckVariant"; - version = "1.0.0.1"; - sha256 = "12yxavf2bcd6cpf09j4d97myks4v34jki5hqjl9kcwar8k8j8gls"; + version = "1.0.1.0"; + sha256 = "1hfx28krjmx06jlivri51jcssngyf7i8n1vjmz0n948i83hn5kga"; libraryHaskellDepends = [ base QuickCheck ]; testHaskellDepends = [ base hspec QuickCheck ]; - description = "Generator of \"valid\" and \"invalid\" data in a type class"; + benchmarkHaskellDepends = [ base hspec QuickCheck ]; + description = "Valid and Invalid generator"; license = lib.licenses.gpl3Only; hydraPlatforms = lib.platforms.none; broken = true; @@ -17895,7 +17898,7 @@ self: { license = lib.licenses.bsd3; }) {}; - "SVGFonts_1_8" = callPackage + "SVGFonts_1_8_0_1" = callPackage ({ mkDerivation, attoparsec, base, blaze-markup, blaze-svg , bytestring, cereal, cereal-vector, containers, data-default-class , diagrams-core, diagrams-lib, directory, parsec, split, text @@ -17903,8 +17906,8 @@ self: { }: mkDerivation { pname = "SVGFonts"; - version = "1.8"; - sha256 = "1aqwckrm0vy7y0i8ymq0kvshwwwdrvy13x9jhpxk466mcj19gg2g"; + version = "1.8.0.1"; + sha256 = "0r3z7i7x56qvhyc51jlq084c1biy9xn72nm19mw116gx49rm32k9"; enableSeparateDataOutput = true; libraryHaskellDepends = [ attoparsec base blaze-markup blaze-svg bytestring cereal @@ -20722,10 +20725,8 @@ self: { ({ mkDerivation, base, parsec }: mkDerivation { pname = "ValveValueKeyvalue"; - version = "1.0.1.0"; - sha256 = "05m75nhsz1a2zb59lkdmkv7wznljhr76k7qm2pia37dj8h5zywcy"; - revision = "1"; - editedCabalFile = "1d4n0kqypzrcbxaq43aiw5zaq12ncws5c50ckyzvky4cs208g0is"; + version = "1.1.0.0"; + sha256 = "1hcgyv5fhpqvccpplrpi192vlk8dh1ds3w455fy3yvz14g5rfvkp"; libraryHaskellDepends = [ base parsec ]; description = "A Valve Value-keyvalue parser for Haskell made with Parsec"; license = lib.licenses.mit; @@ -20914,8 +20915,8 @@ self: { ({ mkDerivation, base, bytestring, transformers, vector, vulkan }: mkDerivation { pname = "VulkanMemoryAllocator"; - version = "0.7.2"; - sha256 = "1hdiwm79qmf24rx1wcmc48ykbiy3pfnn0kbg77wfp0rnq7qlcknc"; + version = "0.7.3"; + sha256 = "0ff8ik1y4cxf408kwpasqrkdimh3afvjhpbsjd40zf8h3aywv10b"; libraryHaskellDepends = [ base bytestring transformers vector vulkan ]; @@ -21586,8 +21587,8 @@ self: { }: mkDerivation { pname = "X11"; - version = "1.10.1"; - sha256 = "13a0qf8rwn1s43wcl39f1pcq3h1kw1ddfq205j1ry0j3yafnazxg"; + version = "1.10.2"; + sha256 = "1ip207l97s8nw4daxp9s254agk8f0wibpf0prx0n695klqyn8bz1"; libraryHaskellDepends = [ base data-default-class ]; librarySystemDepends = [ libX11 libXext libXinerama libXrandr libXrender libXScrnSaver @@ -22078,8 +22079,8 @@ self: { }: mkDerivation { pname = "Z-Data"; - version = "1.1.0.0"; - sha256 = "0zjgai814a4zbcyjrmfcy1kq97rds0pjsiz8lma1g8c0fhq2gy5c"; + version = "1.2.0.0"; + sha256 = "1kf20s8y2jgr4gsx72mj9ax6mxrwxz7ss034qsajzd8l3j1h5bir"; setupHaskellDepends = [ base Cabal ]; libraryHaskellDepends = [ base bytestring case-insensitive containers deepseq ghc-prim @@ -24689,34 +24690,6 @@ self: { }) {}; "aeson-compat" = callPackage - ({ mkDerivation, aeson, attoparsec, attoparsec-iso8601, base - , base-compat, base-orphans, bytestring, containers, exceptions - , hashable, QuickCheck, quickcheck-instances, scientific, tagged - , tasty, tasty-hunit, tasty-quickcheck, text, time - , time-locale-compat, unordered-containers, vector - }: - mkDerivation { - pname = "aeson-compat"; - version = "0.3.9"; - sha256 = "1j13gykv4ryvmr14w5blz0nnpdb4p0hpa27wahw3mhb1lwdr8hz0"; - revision = "7"; - editedCabalFile = "15aflmqs5y0yg2p4042yvnhxyp11ndlihs1dxj21bxfdzd1bbkrn"; - libraryHaskellDepends = [ - aeson attoparsec attoparsec-iso8601 base base-compat bytestring - containers exceptions hashable scientific tagged text time - time-locale-compat unordered-containers vector - ]; - testHaskellDepends = [ - aeson attoparsec base base-compat base-orphans bytestring - containers exceptions hashable QuickCheck quickcheck-instances - scientific tagged tasty tasty-hunit tasty-quickcheck text time - time-locale-compat unordered-containers vector - ]; - description = "Compatibility layer for aeson"; - license = lib.licenses.bsd3; - }) {}; - - "aeson-compat_0_3_10" = callPackage ({ mkDerivation, aeson, attoparsec, attoparsec-iso8601, base , base-compat, base-orphans, bytestring, containers, exceptions , hashable, QuickCheck, quickcheck-instances, scientific, tagged @@ -24740,7 +24713,6 @@ self: { ]; description = "Compatibility layer for aeson"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "aeson-decode" = callPackage @@ -24917,23 +24889,24 @@ self: { }) {}; "aeson-flowtyped" = callPackage - ({ mkDerivation, aeson, base, containers, free, recursion-schemes - , reflection, scientific, tasty, tasty-hunit, text, time - , transformers, unordered-containers, vector, wl-pprint + ({ mkDerivation, aeson, base, containers, data-fix, deriving-compat + , free, mtl, recursion-schemes, reflection, scientific, tasty + , tasty-hunit, text, time, unordered-containers, vector, wl-pprint }: mkDerivation { pname = "aeson-flowtyped"; - version = "0.9.1"; - sha256 = "0fp5a4r7nvwqsyq8f17afqpdw59n6sf0wj7z83rhq8n149673rsg"; + version = "0.12.2"; + sha256 = "1b0y415n2a5gzsqxmw7732j5mrwang5cabc7r02zydya735wllbr"; libraryHaskellDepends = [ - aeson base containers free recursion-schemes reflection scientific - text time transformers unordered-containers vector wl-pprint + aeson base containers data-fix deriving-compat free mtl + recursion-schemes reflection scientific text time + unordered-containers vector wl-pprint ]; testHaskellDepends = [ - aeson base containers recursion-schemes tasty tasty-hunit text - unordered-containers vector + aeson base containers data-fix recursion-schemes tasty tasty-hunit + text unordered-containers vector ]; - description = "Create Flow type definitions from Haskell data types"; + description = "Create Flow or TypeScript type definitions from Haskell data types"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; broken = true; @@ -25062,8 +25035,8 @@ self: { }: mkDerivation { pname = "aeson-match-qq"; - version = "1.3.0"; - sha256 = "1jxw5rg8sj0913h9ldknhikpq7avlwj0lmqx613zsr9kv4yhz1qh"; + version = "1.4.0"; + sha256 = "0gbgrw8ww1hk5zsr66cc0k96ha6azw61f54p5yhk0w36p47annv6"; libraryHaskellDepends = [ aeson attoparsec base bytestring either haskell-src-meta scientific template-haskell text unordered-containers vector @@ -25113,25 +25086,6 @@ self: { }) {}; "aeson-optics" = callPackage - ({ mkDerivation, aeson, attoparsec, base, base-compat, bytestring - , optics-core, optics-extra, scientific, text, unordered-containers - , vector - }: - mkDerivation { - pname = "aeson-optics"; - version = "1.1.0.1"; - sha256 = "1pfi84cl7w5bp7dwdhcyi8kchvbfjybqcp0sifqrn70dj2b50mf7"; - revision = "6"; - editedCabalFile = "1id12jhwlgx1gckxjzap4rm3n495fm57ja47gas5r8v2j5ky8lic"; - libraryHaskellDepends = [ - aeson attoparsec base base-compat bytestring optics-core - optics-extra scientific text unordered-containers vector - ]; - description = "Law-abiding optics for aeson"; - license = lib.licenses.mit; - }) {}; - - "aeson-optics_1_1_1" = callPackage ({ mkDerivation, aeson, attoparsec, base, base-compat, bytestring , optics-core, optics-extra, scientific, text, unordered-containers , vector @@ -25146,7 +25100,6 @@ self: { ]; description = "Law-abiding optics for aeson"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "aeson-options" = callPackage @@ -25215,10 +25168,8 @@ self: { }: mkDerivation { pname = "aeson-pretty"; - version = "0.8.8"; - sha256 = "09n7gs91y1fbw6gjszrd2na3isnvk3y5rsi90lzjrwywnqfadkl1"; - revision = "1"; - editedCabalFile = "0xr8f76vmcdvlg8wvw0jdrzpzqy73d4rvf633wfwhmslfr7f5jvg"; + version = "0.8.9"; + sha256 = "021az9az6xik9c9s3rnar5fr1lgy2h3igibf5ixnc7ps3m2lzg2x"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -25233,27 +25184,6 @@ self: { }) {}; "aeson-qq" = callPackage - ({ mkDerivation, aeson, attoparsec, base, base-compat, ghc-prim - , haskell-src-meta, hspec, parsec, scientific, template-haskell - , text, vector - }: - mkDerivation { - pname = "aeson-qq"; - version = "0.8.3"; - sha256 = "10plwzz05qc8068av00jak8rcciw99cbxh3lkx522lmzi37jjccg"; - libraryHaskellDepends = [ - aeson attoparsec base base-compat haskell-src-meta parsec - scientific template-haskell text vector - ]; - testHaskellDepends = [ - aeson attoparsec base base-compat ghc-prim haskell-src-meta hspec - parsec scientific template-haskell text vector - ]; - description = "JSON quasiquoter for Haskell"; - license = lib.licenses.mit; - }) {}; - - "aeson-qq_0_8_4" = callPackage ({ mkDerivation, aeson, attoparsec, base, base-compat, ghc-prim , haskell-src-meta, hspec, hspec-discover, parsec, scientific , template-haskell, text, vector @@ -25273,7 +25203,6 @@ self: { testToolDepends = [ hspec-discover ]; description = "JSON quasiquoter for Haskell"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "aeson-quick" = callPackage @@ -25339,37 +25268,6 @@ self: { }) {}; "aeson-schemas" = callPackage - ({ mkDerivation, aeson, aeson-qq, base, criterion, deepseq - , first-class-families, hashable, hint, interpolate, megaparsec - , QuickCheck, raw-strings-qq, tasty, tasty-golden, tasty-hunit - , tasty-quickcheck, template-haskell, text, th-orphans - , th-test-utils, unordered-containers - }: - mkDerivation { - pname = "aeson-schemas"; - version = "1.3.4"; - sha256 = "087pjsjycna4hlzn72bik4jfd8vclfyqh730zll4a2dc7l776g5x"; - libraryHaskellDepends = [ - aeson base first-class-families hashable megaparsec - template-haskell text unordered-containers - ]; - testHaskellDepends = [ - aeson aeson-qq base deepseq first-class-families hashable hint - interpolate megaparsec QuickCheck raw-strings-qq tasty tasty-golden - tasty-hunit tasty-quickcheck template-haskell text th-orphans - th-test-utils unordered-containers - ]; - benchmarkHaskellDepends = [ - aeson base criterion deepseq first-class-families hashable - megaparsec template-haskell text th-test-utils unordered-containers - ]; - description = "Easily consume JSON data on-demand with type-safety"; - license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; - }) {}; - - "aeson-schemas_1_3_5" = callPackage ({ mkDerivation, aeson, aeson-qq, base, criterion, deepseq , first-class-families, hashable, hint, interpolate, megaparsec , QuickCheck, raw-strings-qq, tasty, tasty-golden, tasty-hunit @@ -25380,6 +25278,8 @@ self: { pname = "aeson-schemas"; version = "1.3.5"; sha256 = "1fdq109yjmvixri7hamj8z0iryxxdja8kkm6pk54mi0az0vx9743"; + revision = "1"; + editedCabalFile = "05xdfrzcg9wg5fy6r95y1nxdzvl09ypxr2jdlq3n0mkdf0nph2w1"; libraryHaskellDepends = [ aeson base first-class-families hashable megaparsec template-haskell text unordered-containers @@ -25578,8 +25478,6 @@ self: { ]; description = "Wrappers to derive-via Aeson ToJSON/FromJSON typeclasses"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "aeson-with" = callPackage @@ -25754,12 +25652,13 @@ self: { "agda-language-server" = callPackage ({ mkDerivation, aeson, Agda, base, bytestring, containers, lsp - , mtl, network, network-simple, process, stm, strict, text + , mtl, network, network-simple, process, stm, strict, tasty + , tasty-golden, tasty-hunit, tasty-quickcheck, text }: mkDerivation { pname = "agda-language-server"; - version = "0.0.3.0"; - sha256 = "1sjni83r9snscqlrszx68ld9lyvrrg02abkli23j9yd6yg8zyx8v"; + version = "0.2.1"; + sha256 = "19zxhz5j9vzxr45q4hasvi41cr66pgnxanv1894zgxnpszgj9v10"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -25772,9 +25671,10 @@ self: { ]; testHaskellDepends = [ aeson Agda base bytestring containers lsp mtl network - network-simple process stm strict text + network-simple process stm strict tasty tasty-golden tasty-hunit + tasty-quickcheck text ]; - description = "LSP server for Agda"; + description = "An implementation of language server protocal (LSP) for Agda 2"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; broken = true; @@ -26073,6 +25973,7 @@ self: { description = "A Webmachine-inspired HTTP library"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "airtable-api" = callPackage @@ -26797,18 +26698,17 @@ self: { "algorithmic-composition-basic" = callPackage ({ mkDerivation, base, bytestring, directory, foldable-ix - , mmsyn2-array, mmsyn3, mmsyn7l, mmsyn7ukr-common - , phonetic-languages-simplified-base, process, process-sequential - , ukrainian-phonetics-basic-array + , mmsyn2-array, mmsyn3, mmsyn7l, mmsyn7ukr-common, process + , process-sequential, ukrainian-phonetics-basic-array }: mkDerivation { pname = "algorithmic-composition-basic"; - version = "0.3.1.0"; - sha256 = "0vpqi398nhlawh7dipfzvq6zsk1g9gpjbr35mizm5rms4sj3mfsk"; + version = "0.4.0.0"; + sha256 = "17kajlfr02kq82g281i1bm6x171106wyqz797p6j3iq3jxwp3x91"; libraryHaskellDepends = [ base bytestring directory foldable-ix mmsyn2-array mmsyn3 mmsyn7l - mmsyn7ukr-common phonetic-languages-simplified-base process - process-sequential ukrainian-phonetics-basic-array + mmsyn7ukr-common process process-sequential + ukrainian-phonetics-basic-array ]; description = "Helps to create experimental music from a file (or its part) and a Ukrainian text"; license = lib.licenses.mit; @@ -29056,6 +28956,8 @@ self: { ]; description = "Amazon Elemental MediaConvert SDK"; license = lib.licenses.mpl20; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "amazonka-medialive" = callPackage @@ -30059,19 +29961,20 @@ self: { "amqp-utils" = callPackage ({ mkDerivation, amqp, base, bytestring, connection, containers - , data-default-class, directory, filepath, hinotify, magic, network - , process, text, time, tls, unix, utf8-string, x509-system + , data-default-class, directory, filepath, filepath-bytestring + , hinotify, magic, network, process, rawfilepath, text, time, tls + , unix, utf8-string, x509-system }: mkDerivation { pname = "amqp-utils"; - version = "0.6.2.2"; - sha256 = "03hc962z1q9gpaa7955y71wyzh1gaazrfcpw8wzacll3p28fdnpx"; + version = "0.6.3.2"; + sha256 = "1qdhp96zqcjd8yd2hmg7c2cl9gdvywp1p3v1xjcax9si5pr83w1i"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ amqp base bytestring connection containers data-default-class - directory filepath hinotify magic network process text time tls - unix utf8-string x509-system + directory filepath filepath-bytestring hinotify magic network + process rawfilepath text time tls unix utf8-string x509-system ]; description = "AMQP toolset for the command line"; license = lib.licenses.gpl3Only; @@ -30664,8 +30567,8 @@ self: { }: mkDerivation { pname = "ansi-terminal-game"; - version = "1.3.0.0"; - sha256 = "08s49nwdj8wlydpbrzxsbz451gfa97n2kvvdv4wfbhwc4gspi9pa"; + version = "1.4.0.0"; + sha256 = "0pxkqjv6xqqyn98y2vpsyyx6n91cjsdwxpx9y636l5n3lk8iq14z"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -32587,8 +32490,8 @@ self: { }: mkDerivation { pname = "arbtt"; - version = "0.11"; - sha256 = "1jxsmwi7nqgmhnx1hv7y1hcff4gpi3zsg3lrzkq3y8dj2pz29whw"; + version = "0.11.1"; + sha256 = "0xlwphjq36wbdzbzl39m163jhrcxnhnrx0lsvmbq4y2gf20r0bbq"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -32940,29 +32843,31 @@ self: { }) {}; "argo" = callPackage - ({ mkDerivation, array, base, bytestring, containers, deepseq - , tasty, tasty-bench, tasty-hunit, tasty-quickcheck - , template-haskell, text + ({ mkDerivation, base, bytestring, containers, deepseq, tasty + , tasty-bench, tasty-hunit, tasty-quickcheck, template-haskell + , text, transformers }: mkDerivation { pname = "argo"; - version = "0.2021.10.17"; - sha256 = "0chzjpdz2x7nkqhphxj2x9knhdjm9dz2880s6f04p6w4w849pm33"; + version = "0.2021.11.2"; + sha256 = "1jlh8m03ncwx5pckdbi6c620xc45pg1phspp0cmvqgrvy6wkiyjz"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - array base bytestring containers deepseq template-haskell text + base bytestring containers deepseq template-haskell text + transformers ]; executableHaskellDepends = [ - array base bytestring containers deepseq template-haskell text + base bytestring containers deepseq template-haskell text + transformers ]; testHaskellDepends = [ - array base bytestring containers deepseq tasty tasty-hunit - tasty-quickcheck template-haskell text + base bytestring containers deepseq tasty tasty-hunit + tasty-quickcheck template-haskell text transformers ]; benchmarkHaskellDepends = [ - array base bytestring containers deepseq tasty-bench - template-haskell text + base bytestring containers deepseq tasty-bench template-haskell + text transformers ]; description = "Parse and render JSON"; license = lib.licenses.mit; @@ -34419,8 +34324,8 @@ self: { pname = "assoc"; version = "1.0.2"; sha256 = "0kqlizznjy94fm8zr1ng633yxbinjff7cnsiaqs7m33ix338v66q"; - revision = "1"; - editedCabalFile = "17ycclzwnysca80frsyyb6sdd2r5p83lkgwxjjnjg6j62pvf8958"; + revision = "2"; + editedCabalFile = "17jd3668y4j3kwsqgzqjrxymbglhgzgjbkda48djlbhppkzd3ng0"; libraryHaskellDepends = [ base bifunctors tagged ]; description = "swap and assoc: Symmetric and Semigroupy Bifunctors"; license = lib.licenses.bsd3; @@ -35365,8 +35270,8 @@ self: { pname = "attenuation"; version = "0.2.0"; sha256 = "0qp203qchmllxsrcfz04lxnssrij203i5q8byy159vc8cspd03nq"; - revision = "1"; - editedCabalFile = "11h8m92hb0spgzvbijkgfbhbhrnf76a8w2z6yw8zahk0bgdqxrzi"; + revision = "2"; + editedCabalFile = "1ns7cxvx33xfsr66xsiaba2kbdvd3ypbbbj0mjlhw76pnhpdyc5f"; libraryHaskellDepends = [ base constraints ]; description = "Subtyping relations and variance roles"; license = lib.licenses.asl20; @@ -35378,6 +35283,8 @@ self: { pname = "attenuation-profunctors"; version = "0.1.0"; sha256 = "11zhh9iwb7r2jfp9bn8bqx1wzl4mln9v80gb2jijp0rryag25ili"; + revision = "1"; + editedCabalFile = "1y3if7w1r6lcr7287svb55pnmhhxrgl7yc906nnwr5qijbabsyvs"; libraryHaskellDepends = [ attenuation base constraints profunctors ]; @@ -35485,7 +35392,7 @@ self: { license = lib.licenses.bsd3; }) {}; - "attoparsec_0_14_1" = callPackage + "attoparsec_0_14_2" = callPackage ({ mkDerivation, array, base, bytestring, case-insensitive , containers, criterion, deepseq, directory, filepath, ghc-prim , http-types, parsec, QuickCheck, quickcheck-unicode, scientific @@ -35494,8 +35401,8 @@ self: { }: mkDerivation { pname = "attoparsec"; - version = "0.14.1"; - sha256 = "1cr9mlv4ppba31khpgripasy6zk1g353yf1fq1vzja0cv60qy3w7"; + version = "0.14.2"; + sha256 = "157lc8s6a8jw4s8w1a1rylxlggsa6lyq239na8ix3czmi79g3jwz"; libraryHaskellDepends = [ array base bytestring containers deepseq ghc-prim scientific text transformers @@ -35905,8 +35812,8 @@ self: { }: mkDerivation { pname = "aur"; - version = "7.0.6"; - sha256 = "0rq2gyhg5c7xwj7w582l99al8jhsacv3vl77p1mfzcc79h424jdy"; + version = "7.0.7"; + sha256 = "0k8b3rc89ibln7idb1a1f6g3p04f1n7mnk8q8nqiggygf8r6sdnh"; libraryHaskellDepends = [ aeson base bytestring hashable http-client http-types text ]; @@ -35938,6 +35845,43 @@ self: { }) {}; "aura" = callPackage + ({ mkDerivation, aeson, algebraic-graphs, aur, base, bytestring + , containers, filepath, hashable, http-client, http-client-tls + , http-types, language-bash, megaparsec, network-uri + , optparse-applicative, prettyprinter, prettyprinter-ansi-terminal + , rio, scheduler, stm, tasty, tasty-hunit, text, time, transformers + , typed-process, versions + }: + mkDerivation { + pname = "aura"; + version = "3.2.5"; + sha256 = "1zrsjcvmhh3y0pahnz2fr944j2xz8sv4dcd9xz08vci4x1lm87hr"; + revision = "1"; + editedCabalFile = "0rmihjl4ysw36fpj4g5zkdhzvq8c0n0vxv4zlcmn35q37k85qpb6"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson algebraic-graphs aur base bytestring containers filepath + hashable http-client http-types language-bash megaparsec + network-uri prettyprinter prettyprinter-ansi-terminal rio scheduler + stm text time transformers typed-process versions + ]; + executableHaskellDepends = [ + aeson aur base bytestring containers http-client http-client-tls + megaparsec optparse-applicative prettyprinter + prettyprinter-ansi-terminal rio scheduler text transformers + typed-process versions + ]; + testHaskellDepends = [ + base bytestring containers megaparsec rio tasty tasty-hunit text + versions + ]; + description = "A secure package manager for Arch Linux and the AUR"; + license = lib.licenses.gpl3Only; + hydraPlatforms = lib.platforms.none; + }) {}; + + "aura_3_2_6" = callPackage ({ mkDerivation, aeson, algebraic-graphs, aur, base, bytestring , containers, filepath, hashable, http-client, http-client-tls , http-types, language-bash, megaparsec, network-uri @@ -35949,6 +35893,8 @@ self: { pname = "aura"; version = "3.2.6"; sha256 = "07sry2nf41f101ldcfcf2x5pp0w7qvlvl6m4j5bbkvxp3rmsjbx2"; + revision = "1"; + editedCabalFile = "1ilxbi5pvg7ayyfww2y85y2503ihzr1w06w2sgbm3pk6qcjz95jg"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -36772,8 +36718,8 @@ self: { pname = "aws"; version = "0.22"; sha256 = "1l3f94mpih7slz37ikyjkyrwvlf110w87997d8sbnbd8glwlcb8r"; - revision = "1"; - editedCabalFile = "1xj2chcn73v45wxb3lr0b3px6p3gbbzvwgx1mqrds4lp2yy7a1cr"; + revision = "2"; + editedCabalFile = "02dn1wzcnsa9m6ycwnmfrrmsmlp9fl5x96xv95ifflfklnvy7ypl"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -36803,8 +36749,8 @@ self: { pname = "aws-arn"; version = "0.1.0.0"; sha256 = "0wwmrpmcw01wifcpfsb81fx54c49zgg80h2y11cjpr7qkwdhiqwd"; - revision = "1"; - editedCabalFile = "0jcz4wwi46mxymv7d15h5qj2xq8v9b02jqa4ap5r3fa9q6bl9sh3"; + revision = "2"; + editedCabalFile = "17yvsm3rqvr8vy8qs7l4xvp3bnlmyvwq8bmb6gjacgz46k30dq0f"; libraryHaskellDepends = [ base deriving-compat hashable lens text ]; @@ -36925,8 +36871,8 @@ self: { }: mkDerivation { pname = "aws-easy"; - version = "0.1.0.2"; - sha256 = "16a0dfgd6ggm5b4g75913b5pc0s5hdh7n1h3j22d4j50knd8j5r4"; + version = "0.1.0.3"; + sha256 = "1k69bk6d09w803zcqf7g7yf6njl4rv5nlhdvlv8bv0ch5j5d1772"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -38394,8 +38340,8 @@ self: { ({ mkDerivation, barbies, base, split, template-haskell }: mkDerivation { pname = "barbies-th"; - version = "0.1.8"; - sha256 = "19cznyjds09l8k844bhc1k2m50w455j7n13826z0np01a23qhyad"; + version = "0.1.9"; + sha256 = "1brikm7qr2yi3426vgwjjxjrvw060sb0v7jbxrhazjps28f6aa3n"; libraryHaskellDepends = [ barbies base split template-haskell ]; testHaskellDepends = [ barbies base ]; description = "Create strippable HKD via TH"; @@ -38539,12 +38485,12 @@ self: { broken = true; }) {}; - "base_4_15_0_0" = callPackage + "base_4_16_0_0" = callPackage ({ mkDerivation, ghc-bignum, ghc-prim, rts }: mkDerivation { pname = "base"; - version = "4.15.0.0"; - sha256 = "12s4v5w97vaxk66a1mgdgypv765j61lq2n2h4iiazirpggd73n3g"; + version = "4.16.0.0"; + sha256 = "0m5h5kynyfll8hna1dgqw7s2w5spvxzp84pm3niinpf9fva6hhv9"; libraryHaskellDepends = [ ghc-bignum ghc-prim rts ]; description = "Basic libraries"; license = lib.licenses.bsd3; @@ -38564,13 +38510,13 @@ self: { license = lib.licenses.mit; }) {}; - "base-compat_0_12_0" = callPackage - ({ mkDerivation, base, unix }: + "base-compat_0_12_1" = callPackage + ({ mkDerivation, base, ghc-prim, unix }: mkDerivation { pname = "base-compat"; - version = "0.12.0"; - sha256 = "1fb8lszh8bc4158bc3lyhzakjsjx5l7sa3598zg0zzcrnzb75axp"; - libraryHaskellDepends = [ base unix ]; + version = "0.12.1"; + sha256 = "1z8ml19jsq616d9ggxly99rjqd3bsbmp17w4s2qwm20v0js3qs7v"; + libraryHaskellDepends = [ base ghc-prim unix ]; description = "A compatibility layer for base"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; @@ -38591,17 +38537,15 @@ self: { license = lib.licenses.mit; }) {}; - "base-compat-batteries_0_12_0" = callPackage - ({ mkDerivation, base, base-compat, hspec, hspec-discover - , QuickCheck + "base-compat-batteries_0_12_1" = callPackage + ({ mkDerivation, base, base-compat, ghc-prim, hspec, hspec-discover + , OneTuple, QuickCheck }: mkDerivation { pname = "base-compat-batteries"; - version = "0.12.0"; - sha256 = "02j5v1xcj383nfjg1r3y0py4ahy8mhigkkabqvij5a5lfdbalkfs"; - revision = "1"; - editedCabalFile = "17wd527f6ssylwg81f51s45mpp2k3b3zb0j5a6xd6z682x2pj97b"; - libraryHaskellDepends = [ base base-compat ]; + version = "0.12.1"; + sha256 = "12w3bpsz3xykhibc8wkhiii9nav7yxhlv424cy1b9v9ihbfkr3zr"; + libraryHaskellDepends = [ base base-compat ghc-prim OneTuple ]; testHaskellDepends = [ base hspec QuickCheck ]; testToolDepends = [ hspec-discover ]; description = "base-compat with extra batteries"; @@ -38699,8 +38643,8 @@ self: { }: mkDerivation { pname = "base-orphans"; - version = "0.8.5"; - sha256 = "1lw1jhrrsdq7x9wr2bwkxq9mscidcad0n30kh9gfk8kgifl5xh9k"; + version = "0.8.6"; + sha256 = "1sqmh3x07aw2l2vzj8dhhs1a41kl8r0n46ayn92dh3yvg95ir8i0"; libraryHaskellDepends = [ base ghc-prim ]; testHaskellDepends = [ base hspec QuickCheck ]; testToolDepends = [ hspec-discover ]; @@ -38737,10 +38681,8 @@ self: { }: mkDerivation { pname = "base16"; - version = "0.3.0.1"; - sha256 = "10id9h9mas4kb4kfiz7hhp2hhwnb9mh92pr327c53jqxi4hazgnd"; - revision = "4"; - editedCabalFile = "05fpdw8qkdg7cfyfsnk5npcxqgjgasd8hi096nh6czj96xn4s1b6"; + version = "0.3.0.2"; + sha256 = "16jkb0cmi7gi6plm4ycrk6a1ahjzzlgjf937cv8hld83pg713yvz"; libraryHaskellDepends = [ base bytestring deepseq primitive text text-short ]; @@ -38778,8 +38720,8 @@ self: { }: mkDerivation { pname = "base16-bytestring"; - version = "1.0.1.0"; - sha256 = "1ynnplw8iz3v5ld0xxgpxgasb0hg62x62wxxf5lx6lxyb15hmiy0"; + version = "1.0.2.0"; + sha256 = "1167f9jaivnabn6kg2gc421ac9njb67fr4v0adbj3qph7qa92nhx"; libraryHaskellDepends = [ base bytestring ]; testHaskellDepends = [ base bytestring HUnit QuickCheck test-framework @@ -39408,6 +39350,8 @@ self: { pname = "batching"; version = "0.1.0.0"; sha256 = "1mks6w3zfvkdgi9didf94jp1hac9ps4pli75vn79p9hxjwc2fm27"; + revision = "2"; + editedCabalFile = "1ym25swz7hgfw7x2z55bmq8z3j9p22ln9z67lcdkc9sq4bfv0a8x"; libraryHaskellDepends = [ base primitive short-vec sint ]; testHaskellDepends = [ base primitive QuickCheck short-vec sint test-framework @@ -40048,8 +39992,8 @@ self: { }: mkDerivation { pname = "bearriver"; - version = "0.13.1.3"; - sha256 = "1qycifi7gnfky4pxy3dr7az0iv2s2xykjy4mccy8gki05fsy0lg5"; + version = "0.13.3"; + sha256 = "0qakz6fidvhg121j442lsvcz9va0xa0rks41qj293mnrs8savv0p"; libraryHaskellDepends = [ base dunai MonadRandom mtl simple-affine-space transformers ]; @@ -40311,8 +40255,8 @@ self: { ({ mkDerivation, base, bytestring, mtl, time }: mkDerivation { pname = "benchpress"; - version = "0.2.2.17"; - sha256 = "17bwjhy4rrlpk7ni16nh2f1yjrjyj392g4h2z3vxrnkjxfadxx3r"; + version = "0.2.2.18"; + sha256 = "1ihg97zkvhq7sbp851q3qdpf2mmi2l88w742pq6cldhlhb8q7xa5"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base mtl time ]; @@ -41236,33 +41180,6 @@ self: { }) {}; "binary-instances" = callPackage - ({ mkDerivation, aeson, base, binary, binary-orphans - , case-insensitive, hashable, QuickCheck, quickcheck-instances - , scientific, tagged, tasty, tasty-quickcheck, text, text-binary - , time-compat, unordered-containers, vector - , vector-binary-instances - }: - mkDerivation { - pname = "binary-instances"; - version = "1.0.1"; - sha256 = "0whqjziwqrqslf6byliry84pg47z7vc6yjligpzb8gb5db2gw1h0"; - revision = "1"; - editedCabalFile = "1xw2rl5mk626i54c0azrw5as3avd2cvzxn8l6sg5ymc14c240iwp"; - libraryHaskellDepends = [ - aeson base binary binary-orphans case-insensitive hashable - scientific tagged text text-binary time-compat unordered-containers - vector vector-binary-instances - ]; - testHaskellDepends = [ - aeson base binary case-insensitive hashable QuickCheck - quickcheck-instances scientific tagged tasty tasty-quickcheck text - time-compat unordered-containers vector - ]; - description = "Orphan instances for binary"; - license = lib.licenses.bsd3; - }) {}; - - "binary-instances_1_0_2" = callPackage ({ mkDerivation, aeson, base, binary, binary-orphans, bytestring , case-insensitive, hashable, QuickCheck, quickcheck-instances , scientific, tagged, tasty, tasty-quickcheck, text, text-binary @@ -41285,7 +41202,6 @@ self: { ]; description = "Orphan instances for binary"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "binary-io" = callPackage @@ -41355,6 +41271,25 @@ self: { license = lib.licenses.bsd3; }) {}; + "binary-orphans_1_0_2" = callPackage + ({ mkDerivation, base, binary, OneTuple, QuickCheck + , quickcheck-instances, tagged, tasty, tasty-quickcheck + , transformers + }: + mkDerivation { + pname = "binary-orphans"; + version = "1.0.2"; + sha256 = "0q7yk3m275lcmar1dsrz009xasw34755cjrb6f2h4kkymy93qjsz"; + libraryHaskellDepends = [ base binary OneTuple transformers ]; + testHaskellDepends = [ + base binary OneTuple QuickCheck quickcheck-instances tagged tasty + tasty-quickcheck + ]; + description = "Compatibility package for binary; provides instances"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "binary-parser" = callPackage ({ mkDerivation, base, bytestring, mtl, QuickCheck , quickcheck-instances, rerebase, tasty, tasty-hunit @@ -41533,36 +41468,6 @@ self: { }) {}; "binary-tagged" = callPackage - ({ mkDerivation, array, base, base16-bytestring, binary - , binary-instances, bytestring, containers, criterion, deepseq - , QuickCheck, quickcheck-instances, singleton-bool, structured - , tagged, tasty, tasty-hunit, tasty-quickcheck, text, transformers - , unordered-containers - }: - mkDerivation { - pname = "binary-tagged"; - version = "0.3"; - sha256 = "1bvzwhdjxxr7b3lk23rwcygi34d6a5mairi2j2gh7k3p8983fgss"; - revision = "2"; - editedCabalFile = "0h397jzajqiw01nf7fkjmqzsmzd08d1z6f9ff2rvcj4s6wsqkik8"; - libraryHaskellDepends = [ - array base base16-bytestring binary bytestring containers - structured tagged - ]; - testHaskellDepends = [ - base binary binary-instances bytestring QuickCheck - quickcheck-instances singleton-bool tagged tasty tasty-hunit - tasty-quickcheck transformers - ]; - benchmarkHaskellDepends = [ - base binary binary-instances bytestring criterion deepseq text - unordered-containers - ]; - description = "Tagged binary serialisation"; - license = lib.licenses.bsd3; - }) {}; - - "binary-tagged_0_3_1" = callPackage ({ mkDerivation, array, base, base16-bytestring, binary , binary-instances, bytestring, containers, criterion, deepseq , QuickCheck, quickcheck-instances, singleton-bool, structured @@ -41588,7 +41493,6 @@ self: { ]; description = "Tagged binary serialisation"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "binary-tree" = callPackage @@ -44311,15 +44215,15 @@ self: { }) {}; "blaze-builder" = callPackage - ({ mkDerivation, base, bytestring, deepseq, HUnit, QuickCheck - , test-framework, test-framework-hunit, test-framework-quickcheck2 - , text, utf8-string + ({ mkDerivation, base, bytestring, deepseq, ghc-prim, HUnit + , QuickCheck, test-framework, test-framework-hunit + , test-framework-quickcheck2, text, utf8-string }: mkDerivation { pname = "blaze-builder"; - version = "0.4.2.1"; - sha256 = "01hbx82djckj2x74sk9kc79111djq7f2af3zl5i21y9zkjy8js3f"; - libraryHaskellDepends = [ base bytestring deepseq text ]; + version = "0.4.2.2"; + sha256 = "0rxg6vjr0ji6g1nngrqpl4k1q9w66fwkhld9cqm5yfhx0a69kp1c"; + libraryHaskellDepends = [ base bytestring deepseq ghc-prim text ]; testHaskellDepends = [ base bytestring HUnit QuickCheck test-framework test-framework-hunit test-framework-quickcheck2 text utf8-string @@ -44494,6 +44398,8 @@ self: { pname = "blaze-markup"; version = "0.8.2.8"; sha256 = "0jd30wg5yz0a97b36zwqg4hv8faifza1n2gys3l1p3fwf9l3zz23"; + revision = "1"; + editedCabalFile = "1azqgw61l5zqjrjg176glx2m4nlyrmrz7a7vrpvbbkfqymwp7mfr"; libraryHaskellDepends = [ base blaze-builder bytestring text ]; testHaskellDepends = [ base blaze-builder bytestring containers HUnit QuickCheck tasty @@ -44744,12 +44650,12 @@ self: { }: mkDerivation { pname = "blockfrost-api"; - version = "0.1.0.0"; - sha256 = "0fc1s4ajx2l5s3csqz7q7r6kr985607cj3a2x2ypwv1q6x1f2amz"; + version = "0.2.0.0"; + sha256 = "0j6ahr51dxwxzscix38awsrfkmz1wzfq3arn9h2s5iciicbj9cf9"; libraryHaskellDepends = [ aeson base bytestring data-default-class deriving-aeson lens QuickCheck quickcheck-instances safe-money servant servant-docs - servant-multipart-api template-haskell text time + servant-multipart-api template-haskell text time vector ]; testHaskellDepends = [ aeson base bytestring data-default hspec raw-strings-qq safe-money @@ -44768,8 +44674,8 @@ self: { }: mkDerivation { pname = "blockfrost-client"; - version = "0.1.0.0"; - sha256 = "0n21zbmspjix1jnwym7xijaciyii85phb07ndr5dih12i9vsncp6"; + version = "0.2.0.0"; + sha256 = "0hrdads05vzmsq8hz8w6x16h56frvsc7pscdvri3njb5nbvcfbcq"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -44794,8 +44700,8 @@ self: { }: mkDerivation { pname = "blockfrost-client-core"; - version = "0.1.0.0"; - sha256 = "0khybzvsy61zl4z02ccvh51gl4xj2cbi20i27xl4wxrhw6iqzc0i"; + version = "0.2.0.0"; + sha256 = "0hsgsvgvl0fmf8l8ma57cn5mxc02m30h9rvirgrwfp6mww4ar351"; libraryHaskellDepends = [ aeson base blockfrost-api bytestring case-insensitive containers data-default http-client http-client-tls http-types servant @@ -44889,21 +44795,19 @@ self: { }: mkDerivation { pname = "bloodhound"; - version = "0.16.0.0"; - sha256 = "0g4x2g0qmwgfrz39iwwagrr7p19fmmz1fpfk29bkmvqvbfvsjgqz"; - revision = "1"; - editedCabalFile = "129sx2n094p2y7k8hf1cpr84hw2z9lk37l1w515r85n09ckkyb2l"; + version = "0.18.0.0"; + sha256 = "1dmmvpcmylnwwlw8p30azd9wfa4fk18fd13jnb1gx4wjs8jcwy7p"; libraryHaskellDepends = [ aeson base blaze-builder bytestring containers exceptions hashable http-client http-types mtl network-uri scientific semigroups semver text time transformers unordered-containers vector ]; testHaskellDepends = [ - aeson base bytestring containers errors exceptions hspec - http-client http-types microlens microlens-aeson mtl network-uri - pretty-simple QuickCheck quickcheck-arbitrary-template - quickcheck-properties semigroups semver temporary text time - unix-compat unordered-containers vector + aeson base blaze-builder bytestring containers errors exceptions + hashable hspec http-client http-types microlens microlens-aeson mtl + network-uri pretty-simple QuickCheck quickcheck-arbitrary-template + quickcheck-properties scientific semigroups semver temporary text + time transformers unix-compat unordered-containers vector ]; description = "Elasticsearch client library for Haskell"; license = lib.licenses.bsd3; @@ -45522,6 +45426,17 @@ self: { hydraPlatforms = lib.platforms.none; }) {}; + "bookhound" = callPackage + ({ mkDerivation, base, containers, split, time }: + mkDerivation { + pname = "bookhound"; + version = "0.1.2.0"; + sha256 = "093k8wnj1mgl0i8k3mz1bbigx2dr8shmqv51kq3bli5mkl7msc6w"; + libraryHaskellDepends = [ base containers split time ]; + description = "Simple Parser Combinators & Parsers for usual data formats"; + license = "LGPL"; + }) {}; + "bookkeeper" = callPackage ({ mkDerivation, base, criterion, data-default-class, doctest, Glob , hspec, markdown-unlit, QuickCheck, type-level-sets, yaml @@ -46122,6 +46037,18 @@ self: { license = lib.licenses.mit; }) {}; + "bound-simple" = callPackage + ({ mkDerivation, base, hspec, transformers }: + mkDerivation { + pname = "bound-simple"; + version = "0.2.0.0"; + sha256 = "0vsqbgb75d20sqis9wk00z301hw5kjknszgd0k07rhymhcja0v5j"; + libraryHaskellDepends = [ base transformers ]; + testHaskellDepends = [ base hspec ]; + description = "A lightweight implementation of 'bound'"; + license = lib.licenses.bsd3; + }) {}; + "bounded-array" = callPackage ({ mkDerivation, array, base }: mkDerivation { @@ -46503,7 +46430,7 @@ self: { license = lib.licenses.bsd3; }) {}; - "brick_0_64_1" = callPackage + "brick_0_64_2" = callPackage ({ mkDerivation, base, bytestring, config-ini, containers , contravariant, data-clist, deepseq, directory, dlist, exceptions , filepath, microlens, microlens-mtl, microlens-th, QuickCheck, stm @@ -46512,8 +46439,8 @@ self: { }: mkDerivation { pname = "brick"; - version = "0.64.1"; - sha256 = "13n4m4qfxbh8grqmp3ycl99xf8hszk9539qy73bzz785axgvhhbj"; + version = "0.64.2"; + sha256 = "058kpghx5s559z5l9hav44s8vb5lizn8j7v7l4lmvpqx3a6cisn7"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -47457,8 +47384,8 @@ self: { }: mkDerivation { pname = "bugsnag-hs"; - version = "0.2.0.4"; - sha256 = "1g5390vmw979gd30jx6v370kb317mvw2x9sw1z7kv44j19vv4k39"; + version = "0.2.0.7"; + sha256 = "0wrc9lmx3r3l5hz0avr99f9fcjla5bi4b3iziv59qm93m882hmx3"; enableSeparateDataOutput = true; libraryHaskellDepends = [ aeson base bytestring http-client text time unordered-containers @@ -47468,24 +47395,6 @@ self: { license = lib.licenses.bsd3; }) {}; - "bugsnag-hs_0_2_0_6" = callPackage - ({ mkDerivation, aeson, base, bytestring, hedgehog, http-client - , text, time, unordered-containers - }: - mkDerivation { - pname = "bugsnag-hs"; - version = "0.2.0.6"; - sha256 = "0kq2mxsl6rm95v551vwjcim0sfk2lhc2n95f28pmglpp5qxc1q7j"; - enableSeparateDataOutput = true; - libraryHaskellDepends = [ - aeson base bytestring http-client text time unordered-containers - ]; - testHaskellDepends = [ aeson base bytestring hedgehog ]; - description = "A Bugsnag client for Haskell"; - license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - }) {}; - "bugzilla" = callPackage ({ mkDerivation, aeson, base, blaze-builder, bytestring, connection , containers, data-default, http-conduit, http-types, iso8601-time @@ -47509,27 +47418,6 @@ self: { }) {}; "bugzilla-redhat" = callPackage - ({ mkDerivation, aeson, base, blaze-builder, bytestring, connection - , containers, hspec, http-conduit, http-types, iso8601-time - , resourcet, text, time, transformers, unordered-containers, vector - }: - mkDerivation { - pname = "bugzilla-redhat"; - version = "0.3.2"; - sha256 = "1f2v2mqbyjlv6xj9vxdzbl1kba5smpkb38dxprp13d33jf2rxamm"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - aeson base blaze-builder bytestring connection containers - http-conduit http-types iso8601-time resourcet text time - transformers unordered-containers vector - ]; - testHaskellDepends = [ aeson base hspec time ]; - description = "A Haskell interface to the Bugzilla native REST API"; - license = lib.licenses.bsd3; - }) {}; - - "bugzilla-redhat_0_3_3" = callPackage ({ mkDerivation, aeson, base, blaze-builder, bytestring, connection , containers, hspec, http-conduit, http-types, iso8601-time , resourcet, text, time, transformers, unordered-containers, vector @@ -47548,7 +47436,6 @@ self: { testHaskellDepends = [ aeson base hspec time ]; description = "A Haskell interface to the Bugzilla native REST API"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "build" = callPackage @@ -48014,8 +47901,8 @@ self: { }: mkDerivation { pname = "buttplug-hs-core"; - version = "0.1.0.0"; - sha256 = "0ayii1hq6p4qnjvyfpv2776ikjh0q4ymxm0lk8q73vk1j6kq1j3y"; + version = "0.1.0.1"; + sha256 = "05mh1ly18v4lp6ynz4s2mbk6w9ibmzmrlz8z4wsv4y9bd4f2w4gl"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -48291,8 +48178,8 @@ self: { }: mkDerivation { pname = "bytelog"; - version = "0.1.0.0"; - sha256 = "03acvb13q3bs77qyxsf91b9l2wv6f23lrghqnh2dacsdrg75dpfa"; + version = "0.1.1.0"; + sha256 = "06z3m5rimwswkiimgva896vqs7i92pdslgqaxk80iy1as04z218i"; libraryHaskellDepends = [ base bytebuild byteslice natural-arithmetic posix-api primitive ]; @@ -48593,33 +48480,19 @@ self: { }) {}; "bytestring-lexing" = callPackage - ({ mkDerivation, base, bytestring }: - mkDerivation { - pname = "bytestring-lexing"; - version = "0.5.0.2"; - sha256 = "0wrzniawhgpphc6yx1v972gyqxdbv0pizaz9bafahrshyb9svy81"; - revision = "1"; - editedCabalFile = "0icnbv83h542vkmn51ykzc4w1g7nl4w6d6lj79909hnwr2g10616"; - libraryHaskellDepends = [ base bytestring ]; - description = "Parse and produce literals efficiently from strict or lazy bytestrings"; - license = lib.licenses.bsd2; - }) {}; - - "bytestring-lexing_0_5_0_7" = callPackage ({ mkDerivation, base, bytestring, tasty, tasty-quickcheck , tasty-smallcheck }: mkDerivation { pname = "bytestring-lexing"; - version = "0.5.0.7"; - sha256 = "1p7i2haix4m11an3djaq65cnd293hzwqy4cd2i8jxzcl248pk6iy"; + version = "0.5.0.8"; + sha256 = "1mgkip351x8br576zl1fwblanm03vwg25jcmpp4iibyz1adj9cwb"; libraryHaskellDepends = [ base bytestring ]; testHaskellDepends = [ base bytestring tasty tasty-quickcheck tasty-smallcheck ]; description = "Efficiently parse and produce common integral and fractional numbers"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "bytestring-mmap" = callPackage @@ -48838,13 +48711,11 @@ self: { ({ mkDerivation, base, binary, bytestring }: mkDerivation { pname = "bytestring-trie"; - version = "0.2.5.2"; - sha256 = "1sxym7phj61cwpdp6ajh6jrnm9n48n0rzkm06ynip609d9n5zq3w"; + version = "0.2.5.3"; + sha256 = "1751g4bgkvyjh46nzzy4m8cj71ml7znchqaicyz74n93j1bqpj89"; libraryHaskellDepends = [ base binary bytestring ]; description = "An efficient finite map from (byte)strings to values"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "bytestring-typenats" = callPackage @@ -49298,8 +49169,8 @@ self: { ({ mkDerivation, base, Cabal, filepath }: mkDerivation { pname = "cabal-appimage"; - version = "0.3.0.2"; - sha256 = "0hyjb8y4zf7qccyzsms98sd0kgz83q1aqfhgx2f3dq1nprhbg9ld"; + version = "0.3.0.3"; + sha256 = "0mkbfy9nxdmr8sbvpr6zrh2vvycslmrbc1m32mfxk9kr44f4wjli"; libraryHaskellDepends = [ base Cabal filepath ]; description = "Cabal support for creating AppImage applications"; license = lib.licenses.agpl3Only; @@ -52207,17 +52078,18 @@ self: { "casa-abbreviations-and-acronyms" = callPackage ({ mkDerivation, base, bytestring, containers, fuzzy, lens - , monoid-subclasses, optparse-applicative, profunctors, these, wreq + , monoid-subclasses, optparse-applicative, profunctors, semialign + , these, wreq }: mkDerivation { pname = "casa-abbreviations-and-acronyms"; - version = "0.0.8"; - sha256 = "01vfzkd8ap3ambsnzns6j537a21nvml0fa7qbqvk2knzhlyr7lv6"; + version = "0.0.10"; + sha256 = "0x5n9f56xaiddxx3yxfwkhfv2zachhhmzrp7lvz1l98hmrpz9wsy"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base bytestring containers fuzzy lens monoid-subclasses profunctors - these wreq + semialign these ]; executableHaskellDepends = [ base bytestring containers fuzzy lens monoid-subclasses @@ -52811,8 +52683,8 @@ self: { }: mkDerivation { pname = "cassava-megaparsec"; - version = "2.0.2"; - sha256 = "03x1462agrfdagklp8c89b8p4z2hd8nbf6d3895sz770zjkawda7"; + version = "2.0.4"; + sha256 = "0pg9z38jmrylbj683b6pf7psipp7lrdq6mn1hbj8v2gj5lh8yf8n"; libraryHaskellDepends = [ base bytestring cassava megaparsec unordered-containers vector ]; @@ -53236,8 +53108,8 @@ self: { }: mkDerivation { pname = "cayley-client"; - version = "0.4.15"; - sha256 = "18kr88g4dlzg1ny0v3ql5yc07s0xsgbgszc69hf583d9c196lzib"; + version = "0.4.16"; + sha256 = "1h199fmjchfnfi80mwzhhaw3hi8zmw014w1dla2xkq7bw4cx69d9"; libraryHaskellDepends = [ aeson attoparsec base binary bytestring exceptions http-client http-conduit lens lens-aeson mtl text transformers @@ -53295,8 +53167,8 @@ self: { pname = "cbor-tool"; version = "0.2.2.0"; sha256 = "0rsnnz1zh9jyjif94lrdppzaa41hypqs1r5dlyzbwlw1m75g286p"; - revision = "2"; - editedCabalFile = "15dlsldsc7fhn7i0b0rfsrdnlddjfgjap49b8915cphjc7b17p2p"; + revision = "3"; + editedCabalFile = "12sdpffqii9z70kbxn64vg08wlsgd6llbi479nxjc819cdmpgm59"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -53316,10 +53188,8 @@ self: { }: mkDerivation { pname = "cborg"; - version = "0.2.5.0"; - sha256 = "08da498bpbnl5c919m45mjm7sr78nn6qs7xyl0smfgd06wwm65xf"; - revision = "1"; - editedCabalFile = "0fnyjafbq9lzgr06ladraxfgzk6dj5gns17ihn7lc1ya49yv83wr"; + version = "0.2.6.0"; + sha256 = "1mvsavi8ngsvmcvlmaygsnygf7hn8kdqdhfff91n1zajgpz577h6"; libraryHaskellDepends = [ array base bytestring containers deepseq ghc-prim half integer-gmp primitive text @@ -53340,10 +53210,8 @@ self: { }: mkDerivation { pname = "cborg-json"; - version = "0.2.2.0"; - sha256 = "0ysilz7rrjk94sqr3a61s98hr9qfi1xg13bskmlpc6mpgi2s4s5b"; - revision = "3"; - editedCabalFile = "1sn2f9nfjcbr0n62n4kklbdi3pzpwrcy7ilg7m3v41nwrk53ifwy"; + version = "0.2.3.0"; + sha256 = "1nsind3yiix6mb3xgwcnb267d8w9k0dvfnj78jc58gybx5hl9n53"; libraryHaskellDepends = [ aeson aeson-pretty base cborg scientific text unordered-containers vector @@ -53639,6 +53507,26 @@ self: { license = lib.licenses.bsd3; }) {}; + "cereal_0_5_8_2" = callPackage + ({ mkDerivation, array, base, bytestring, containers, ghc-prim + , QuickCheck, test-framework, test-framework-quickcheck2 + }: + mkDerivation { + pname = "cereal"; + version = "0.5.8.2"; + sha256 = "0kvnlm22qdmb7g2jz7imsvh799q4nvms1ni0cbba5vigp5ai64hp"; + libraryHaskellDepends = [ + array base bytestring containers ghc-prim + ]; + testHaskellDepends = [ + base bytestring QuickCheck test-framework + test-framework-quickcheck2 + ]; + description = "A binary serialization library"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "cereal-conduit" = callPackage ({ mkDerivation, base, bytestring, cereal, conduit, HUnit, mtl , resourcet, transformers @@ -54065,6 +53953,24 @@ self: { hydraPlatforms = lib.platforms.none; }) {}; + "cgroup-rts-threads" = callPackage + ({ mkDerivation, base, directory, hspec-core, hspec-expectations + , megaparsec, path, path-io, text + }: + mkDerivation { + pname = "cgroup-rts-threads"; + version = "0.2.0.0"; + sha256 = "1anlrgjlkjdljxnj4a1y2f5wd3rzd1b9maz97dkg95djh20wcmig"; + libraryHaskellDepends = [ base directory megaparsec path text ]; + testHaskellDepends = [ + base hspec-core hspec-expectations path path-io + ]; + description = "A container-/cgroup-aware substitute for the GHC RTS `-N` flag"; + license = lib.licenses.mpl20; + hydraPlatforms = lib.platforms.none; + broken = true; + }) {}; + "chain-codes" = callPackage ({ mkDerivation, base, containers, hspec, JuicyPixels }: mkDerivation { @@ -54350,8 +54256,8 @@ self: { }: mkDerivation { pname = "charset"; - version = "0.3.8"; - sha256 = "1rw6y2insgljbi5l1nwqwv9v865sswjly9rvwipd8zajkgks7aks"; + version = "0.3.9"; + sha256 = "12wrphd5j1asb3n6awbph4n695mfmnzk6yzggrp387hx960qfkyb"; libraryHaskellDepends = [ array base bytestring containers unordered-containers ]; @@ -56113,7 +56019,7 @@ self: { license = lib.licenses.bsd2; }) {}; - "citeproc_0_5" = callPackage + "citeproc_0_6" = callPackage ({ mkDerivation, aeson, attoparsec, base, bytestring , case-insensitive, containers, data-default, Diff, directory , file-embed, filepath, mtl, pandoc-types, pretty, safe, scientific @@ -56122,8 +56028,8 @@ self: { }: mkDerivation { pname = "citeproc"; - version = "0.5"; - sha256 = "14l7gpa2phgmgcx2mdln1wf1gfqjmbkm5nyxnihrybmrkg9l8yfk"; + version = "0.6"; + sha256 = "1dx61f8y32b5w84d2fzaxfgdj2gyr0wyqhh6jl2jf2lfn5cbhll3"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -56489,39 +56395,8 @@ self: { }: mkDerivation { pname = "clash-ghc"; - version = "1.4.3"; - sha256 = "00ipx45s2qdjv5cj6v3cg7dgwsw3sd8ai3cr1q9n1k6g26dzc3pw"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - array base bifunctors bytestring Cabal clash-lib clash-prelude - concurrent-supply containers deepseq directory exceptions extra - filepath ghc ghc-boot ghc-prim ghc-typelits-extra - ghc-typelits-knownnat ghc-typelits-natnormalise ghci hashable - haskeline integer-gmp lens mtl primitive process reflection split - template-haskell text time transformers uniplate unix - unordered-containers utf8-string vector - ]; - executableHaskellDepends = [ base ]; - description = "Clash: a functional hardware description language - GHC frontend"; - license = lib.licenses.bsd2; - hydraPlatforms = lib.platforms.none; - }) {}; - - "clash-ghc_1_4_5" = callPackage - ({ mkDerivation, array, base, bifunctors, bytestring, Cabal - , clash-lib, clash-prelude, concurrent-supply, containers, deepseq - , directory, exceptions, extra, filepath, ghc, ghc-boot, ghc-prim - , ghc-typelits-extra, ghc-typelits-knownnat - , ghc-typelits-natnormalise, ghci, hashable, haskeline, integer-gmp - , lens, mtl, primitive, process, reflection, split - , template-haskell, text, time, transformers, uniplate, unix - , unordered-containers, utf8-string, vector - }: - mkDerivation { - pname = "clash-ghc"; - version = "1.4.5"; - sha256 = "1qss6wic91fwbdjmi8bk5hwv282xs7rfxx4zhp0px5dqp2s8kc6v"; + version = "1.4.6"; + sha256 = "0bxzfbpz0kz3f6jdq66vcv1h039ww90xdkivbadaz034ngzallfr"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -56556,51 +56431,8 @@ self: { }: mkDerivation { pname = "clash-lib"; - version = "1.4.3"; - sha256 = "0p6sf9wn25i1f0isqskpy35x6qm2ym63x9fpb54kbd1pp9xqgysl"; - enableSeparateDataOutput = true; - libraryHaskellDepends = [ - aeson aeson-pretty ansi-terminal array attoparsec base - base16-bytestring binary bytestring clash-prelude concurrent-supply - containers cryptohash-sha256 data-binary-ieee754 data-default - deepseq directory dlist errors exceptions extra filepath ghc - ghc-boot-th hashable haskell-src-meta hint integer-gmp interpolate - lens mtl ordered-containers parsers pretty-show prettyprinter - primitive process reducers template-haskell temporary terminal-size - text text-show time transformers trifecta unordered-containers - utf8-string vector vector-binary-instances - ]; - testHaskellDepends = [ - aeson aeson-pretty base base16-bytestring bytestring clash-prelude - concurrent-supply containers data-default deepseq ghc - ghc-typelits-knownnat haskell-src-exts lens pretty-show - quickcheck-text tasty tasty-hunit tasty-quickcheck template-haskell - text transformers unordered-containers - ]; - description = "Clash: a functional hardware description language - As a library"; - license = lib.licenses.bsd2; - hydraPlatforms = lib.platforms.none; - }) {}; - - "clash-lib_1_4_5" = callPackage - ({ mkDerivation, aeson, aeson-pretty, ansi-terminal, array - , attoparsec, base, base16-bytestring, binary, bytestring - , clash-prelude, concurrent-supply, containers, cryptohash-sha256 - , data-binary-ieee754, data-default, deepseq, directory, dlist - , errors, exceptions, extra, filepath, ghc, ghc-boot-th - , ghc-typelits-knownnat, hashable, haskell-src-exts - , haskell-src-meta, hint, integer-gmp, interpolate, lens, mtl - , ordered-containers, parsers, pretty-show, prettyprinter - , primitive, process, quickcheck-text, reducers, tasty, tasty-hunit - , tasty-quickcheck, template-haskell, temporary, terminal-size - , text, text-show, time, transformers, trifecta - , unordered-containers, utf8-string, vector - , vector-binary-instances - }: - mkDerivation { - pname = "clash-lib"; - version = "1.4.5"; - sha256 = "1xbh513l3xg2xh7s9zkqxp2qwf9p2qhmp0xbj91r706av1cilyxi"; + version = "1.4.6"; + sha256 = "0lw0cx2in4qfr8h43qhbxfn5s0srbp2a90nfsrnjbhfsh37aza0b"; enableSeparateDataOutput = true; libraryHaskellDepends = [ aeson aeson-pretty ansi-terminal array attoparsec base @@ -56655,50 +56487,8 @@ self: { }: mkDerivation { pname = "clash-prelude"; - version = "1.4.3"; - sha256 = "07mdl3196yb971hpcbysyaj6vciyrm1p5m9prcymkhkqh7vw9igy"; - setupHaskellDepends = [ base Cabal cabal-doctest ]; - libraryHaskellDepends = [ - array arrows base bifunctors binary bytestring constraints - containers data-binary-ieee754 data-default-class deepseq ghc-prim - ghc-typelits-extra ghc-typelits-knownnat ghc-typelits-natnormalise - half hashable integer-gmp interpolate lens QuickCheck - recursion-schemes reflection singletons template-haskell text - text-show th-abstraction th-lift th-orphans time transformers - type-errors uniplate vector - ]; - testHaskellDepends = [ - base deepseq doctest ghc-typelits-extra ghc-typelits-knownnat - ghc-typelits-natnormalise hedgehog hint quickcheck-classes-base - tasty tasty-hedgehog tasty-hunit tasty-quickcheck tasty-th - template-haskell - ]; - benchmarkHaskellDepends = [ - base criterion deepseq template-haskell - ]; - description = "Clash: a functional hardware description language - Prelude library"; - license = lib.licenses.bsd2; - hydraPlatforms = lib.platforms.none; - broken = true; - }) {}; - - "clash-prelude_1_4_5" = callPackage - ({ mkDerivation, array, arrows, base, bifunctors, binary - , bytestring, Cabal, cabal-doctest, constraints, containers - , criterion, data-binary-ieee754, data-default-class, deepseq - , doctest, ghc-prim, ghc-typelits-extra, ghc-typelits-knownnat - , ghc-typelits-natnormalise, half, hashable, hedgehog, hint - , integer-gmp, interpolate, lens, QuickCheck - , quickcheck-classes-base, recursion-schemes, reflection - , singletons, tasty, tasty-hedgehog, tasty-hunit, tasty-quickcheck - , tasty-th, template-haskell, text, text-show, th-abstraction - , th-lift, th-orphans, time, transformers, type-errors, uniplate - , vector - }: - mkDerivation { - pname = "clash-prelude"; - version = "1.4.5"; - sha256 = "0hikw8n0agjq5x4rfnklb9wixdbcn8snfh3rzb4r8j5b187j1brk"; + version = "1.4.6"; + sha256 = "1m6sk0sss5hsh9x0614vr81pdv715wbdkdf119wnyy0sfjjnmbzi"; setupHaskellDepends = [ base Cabal cabal-doctest ]; libraryHaskellDepends = [ array arrows base bifunctors binary bytestring constraints @@ -56744,8 +56534,8 @@ self: { }: mkDerivation { pname = "clash-shake"; - version = "0.1.1"; - sha256 = "09c13rfsbb7r5fa214143a4nafkbz2slcb999hpj5wvl2882k1ry"; + version = "0.2.0"; + sha256 = "023aa37j8fzy74x8bdd1jkmw60immvy6l3jvvyqkry46dilgsxb9"; libraryHaskellDepends = [ aeson base bytestring clash-ghc clash-lib clash-prelude directory shake split stache text unordered-containers @@ -58506,6 +58296,8 @@ self: { pname = "cmdlib"; version = "0.3.6"; sha256 = "0mxk7yy3sglxc97my5lnphisg6fawifrbdbpz31h7ybiqccx4hsn"; + revision = "1"; + editedCabalFile = "0nzf87q4pi7ng8lvza50z7ljswiny7h1scyhb6z0jd2y2ki4ric8"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base mtl split syb transformers ]; @@ -58788,6 +58580,19 @@ self: { license = lib.licenses.mpl20; }) {}; + "co-log-core_0_3_0_0" = callPackage + ({ mkDerivation, base, doctest, Glob }: + mkDerivation { + pname = "co-log-core"; + version = "0.3.0.0"; + sha256 = "0jwxagj6mwlq5d1cql73qwkrzdq0bsj6bh6g179wkd9bm6rb9r9q"; + libraryHaskellDepends = [ base ]; + testHaskellDepends = [ base doctest Glob ]; + description = "Composable Contravariant Comonadic Logging Library"; + license = lib.licenses.mpl20; + hydraPlatforms = lib.platforms.none; + }) {}; + "co-log-json" = callPackage ({ mkDerivation, aeson, base, bytestring, co-log-core, containers , string-conv, text @@ -58807,8 +58612,8 @@ self: { ({ mkDerivation, base, co-log-core, polysemy }: mkDerivation { pname = "co-log-polysemy"; - version = "0.0.1.2"; - sha256 = "0g1qr6akgbnqs64xammvdpqjf5n5drx4a48w7lxw7l6n7z99rr4n"; + version = "0.0.1.3"; + sha256 = "1c6pyfynzd95vxywl7c110nh8z0rzhvfh9hzbq1nn4ik5whqjnbp"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base co-log-core polysemy ]; @@ -59687,6 +59492,8 @@ self: { pname = "collate"; version = "0.1.0.0"; sha256 = "1fh335mwk51gyhyxilv83z66ilz5ws3ni8cbr4qmpfpgf9m1jp5s"; + revision = "1"; + editedCabalFile = "1456p4dqfmlzf0sagga050f7zrp1rns129q0d9hia8yipmf16j0v"; libraryHaskellDepends = [ base containers lens primitive transformers vector ]; @@ -60534,8 +60341,8 @@ self: { }: mkDerivation { pname = "commonmark"; - version = "0.2.1"; - sha256 = "1vba7v1zaqh811v3j4x42g7mhwvxwgzm997kq1kzd0njby14fq5b"; + version = "0.2.1.1"; + sha256 = "105szy7l4ji255fwv0kbfcy3i3a3a4197zgj6s9jb12kwbn6n0c7"; libraryHaskellDepends = [ base bytestring containers parsec text transformers unicode-transforms @@ -60578,8 +60385,8 @@ self: { }: mkDerivation { pname = "commonmark-extensions"; - version = "0.2.1.2"; - sha256 = "1ky0j7086a8mqpg26j2nkrc5wfwiw5cd3h3jqncpy59vmj1prkx4"; + version = "0.2.2.1"; + sha256 = "0kj32khbs3g5j2dnzy40gv372wp1xxbggl3alqlky37ngl0xc3kb"; libraryHaskellDepends = [ base commonmark containers emojis filepath network-uri parsec text transformers @@ -60821,6 +60628,8 @@ self: { testHaskellDepends = [ base QuickCheck tasty tasty-quickcheck ]; description = "Stacks, queues, and deques with compact representations"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "compact-socket" = callPackage @@ -64037,10 +63846,8 @@ self: { }: mkDerivation { pname = "constraints"; - version = "0.13"; - sha256 = "143558jykvya7y8134dx30g6nh27q5s61nbq369p69igd1aayncj"; - revision = "1"; - editedCabalFile = "1bzhyaxgf4fqg7gakhqgr054mnl2ghc6b1fcb9hw171zj89hsc9w"; + version = "0.13.1"; + sha256 = "0j10sn0i1pk0dsxnf728v0mjg9bcxblkhd8f4fm8rgi32v2sby6k"; libraryHaskellDepends = [ base binary deepseq ghc-prim hashable mtl transformers transformers-compat type-equality @@ -64092,10 +63899,8 @@ self: { ({ mkDerivation, aeson, base, constraints, template-haskell }: mkDerivation { pname = "constraints-extras"; - version = "0.3.1.0"; - sha256 = "0hr1xaxypkmd2a856ha8v3jhkh4hr6g8kar0lr4vj3jsj2h6cmks"; - revision = "1"; - editedCabalFile = "1hcaj1yk4f64v388zq2pd34ljkm68zds3vd8a3yhqr0xgr1wy3y7"; + version = "0.3.2.0"; + sha256 = "11w2w11lr3m33xyk0r6m4ghqppwcapkr4a6gsrnxgwxj0m7zz1qf"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base constraints template-haskell ]; @@ -64204,8 +64009,8 @@ self: { }: mkDerivation { pname = "consumers"; - version = "2.2.0.5"; - sha256 = "1ramqz680xfh47p5kijcp58nby687lm5vacfxpz57a3p01j39y8s"; + version = "2.2.0.6"; + sha256 = "16b21s3j4srjafam3d6s1zc9lwlk5ir875bnfcnjmc5717iv0k29"; libraryHaskellDepends = [ base containers exceptions extra hpqtypes lifted-base lifted-threads log-base monad-control monad-time mtl stm time @@ -64683,8 +64488,8 @@ self: { }: mkDerivation { pname = "contravariant-extras"; - version = "0.3.5.2"; - sha256 = "0ikwzg0992j870yp0x2ssf4mv2hw2nml979apg493m72xnvr1jz9"; + version = "0.3.5.3"; + sha256 = "0r4bnl4gi6zd46h6fjkr33hw37rjxwwr00m08vgbzgkdp853g1ba"; libraryHaskellDepends = [ base contravariant template-haskell template-haskell-compat-v0208 ]; @@ -65425,25 +65230,25 @@ self: { }: mkDerivation { pname = "core-data"; - version = "0.2.1.9"; - sha256 = "098bxx2g4mh3agpx7bccxhq8lpxjgl7a017vzp3ab65ni8126b1r"; + version = "0.2.1.11"; + sha256 = "0i4v84gfrjfimc9nh12mf0fabqysm575c8kiq8awk2f1xmbz2f7q"; libraryHaskellDepends = [ aeson base bytestring containers core-text hashable prettyprinter scientific text unordered-containers vector ]; description = "Convenience wrappers around common data structures and encodings"; - license = lib.licenses.bsd3; + license = lib.licenses.mit; }) {}; - "core-data_0_2_1_10" = callPackage + "core-data_0_3_0_2" = callPackage ({ mkDerivation, aeson, base, bytestring, containers, core-text , hashable, prettyprinter, scientific, text, unordered-containers , vector }: mkDerivation { pname = "core-data"; - version = "0.2.1.10"; - sha256 = "151b8kym71dklgynyjsbzpggbyw7wysa8bv1pkpy94jdbflmlpaf"; + version = "0.3.0.2"; + sha256 = "0rfx7086ilv2rld2nnq96jkygvxxsnfs81mh4b4nmb4drdw02jl0"; libraryHaskellDepends = [ aeson base bytestring containers core-text hashable prettyprinter scientific text unordered-containers vector @@ -65471,27 +65276,6 @@ self: { }) {}; "core-program" = callPackage - ({ mkDerivation, async, base, bytestring, chronologique, core-data - , core-text, directory, exceptions, filepath, fsnotify, hashable - , hourglass, mtl, prettyprinter, safe-exceptions, stm - , template-haskell, terminal-size, text, text-short, transformers - , unix - }: - mkDerivation { - pname = "core-program"; - version = "0.2.9.1"; - sha256 = "1r604zbr0ds2g29rp1470x2m25yv8j2iw1jglf3ppf7j30dsv8qj"; - libraryHaskellDepends = [ - async base bytestring chronologique core-data core-text directory - exceptions filepath fsnotify hashable hourglass mtl prettyprinter - safe-exceptions stm template-haskell terminal-size text text-short - transformers unix - ]; - description = "Opinionated Haskell Interoperability"; - license = lib.licenses.mit; - }) {}; - - "core-program_0_2_12_0" = callPackage ({ mkDerivation, async, base, bytestring, chronologique, core-data , core-text, directory, exceptions, filepath, fsnotify, hashable , hourglass, mtl, prettyprinter, safe-exceptions, stm @@ -65510,9 +65294,51 @@ self: { ]; description = "Opinionated Haskell Interoperability"; license = lib.licenses.mit; + }) {}; + + "core-program_0_3_4_0" = callPackage + ({ mkDerivation, async, base, bytestring, chronologique, core-data + , core-text, directory, exceptions, filepath, fsnotify, hashable + , hourglass, mtl, prettyprinter, safe-exceptions, stm + , template-haskell, terminal-size, text, text-short, transformers + , typed-process, unix + }: + mkDerivation { + pname = "core-program"; + version = "0.3.4.0"; + sha256 = "079wiijdgr2vy7i8n4590p0rfakrmsxk4vx50dg992r2gfjlfzfa"; + libraryHaskellDepends = [ + async base bytestring chronologique core-data core-text directory + exceptions filepath fsnotify hashable hourglass mtl prettyprinter + safe-exceptions stm template-haskell terminal-size text text-short + transformers typed-process unix + ]; + description = "Opinionated Haskell Interoperability"; + license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; }) {}; + "core-telemetry" = callPackage + ({ mkDerivation, async, base, bytestring, chronologique, core-data + , core-program, core-text, exceptions, http-streams, io-streams + , locators, mtl, random, safe-exceptions, scientific, stm + , template-haskell, text, unix, uuid + }: + mkDerivation { + pname = "core-telemetry"; + version = "0.1.7.3"; + sha256 = "05l6s3bw1gp36wx052c5q3mvzzmfdv922851kmr6ax79m5fxdsd9"; + libraryHaskellDepends = [ + async base bytestring chronologique core-data core-program + core-text exceptions http-streams io-streams locators mtl random + safe-exceptions scientific stm template-haskell text unix uuid + ]; + description = "Advanced telemetry"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; + }) {}; + "core-text" = callPackage ({ mkDerivation, ansi-terminal, base, bytestring, colour, deepseq , fingertree, hashable, prettyprinter, template-haskell, text @@ -65520,8 +65346,8 @@ self: { }: mkDerivation { pname = "core-text"; - version = "0.3.2.0"; - sha256 = "1dxxw75xdb1r9vcxfg52z7fg7a1050n8a9c8ndakgxqh5c9j6xqq"; + version = "0.3.5.0"; + sha256 = "0h6m0wrkyhzzqchzqwpvkskpmnvzm1qynf8jhqwk759w5yxmxycw"; libraryHaskellDepends = [ ansi-terminal base bytestring colour deepseq fingertree hashable prettyprinter template-haskell text text-short @@ -65530,22 +65356,19 @@ self: { license = lib.licenses.mit; }) {}; - "core-text_0_3_4_0" = callPackage - ({ mkDerivation, ansi-terminal, base, bytestring, colour, deepseq - , fingertree, hashable, prettyprinter, template-haskell, text - , text-short + "core-warn" = callPackage + ({ mkDerivation, base, containers, containers-good-graph, ghc, syb }: mkDerivation { - pname = "core-text"; - version = "0.3.4.0"; - sha256 = "1013s28p90fifkkqldh35wrdrs86fhan0r8q54imb7b8c7lasj3r"; + pname = "core-warn"; + version = "0.1.0.0"; + sha256 = "1wamh7h1pvskp2yvv1xlq3y4hqpd5krinfgif2p0sn7cprmn5ls2"; libraryHaskellDepends = [ - ansi-terminal base bytestring colour deepseq fingertree hashable - prettyprinter template-haskell text text-short + base containers containers-good-graph ghc syb ]; - description = "A rope type based on a finger tree over UTF-8 fragments"; - license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; + testHaskellDepends = [ base ]; + description = "\"Provide warnings for unexpected Core generation\""; + license = lib.licenses.bsd3; }) {}; "corebot-bliki" = callPackage @@ -66084,6 +65907,8 @@ self: { pname = "cpphs"; version = "1.20.9.1"; sha256 = "17wi7fma2qaqdm1hwgaam3fd140v9bpa8ky0wg708h1pqc5v2nbz"; + revision = "1"; + editedCabalFile = "1f8jzs8zdh4wwbcq8fy6qqxkv75ypnvsm4yzw49wpr3b9vpnzlha"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base directory polyparse time ]; @@ -66973,45 +66798,6 @@ self: { }) {}; "criterion" = callPackage - ({ mkDerivation, aeson, ansi-wl-pprint, base, base-compat - , base-compat-batteries, binary, binary-orphans, bytestring - , cassava, code-page, containers, criterion-measurement, deepseq - , directory, exceptions, filepath, Glob, HUnit, js-chart - , microstache, mtl, mwc-random, optparse-applicative, parsec - , QuickCheck, statistics, tasty, tasty-hunit, tasty-quickcheck - , text, time, transformers, transformers-compat, vector - , vector-algorithms - }: - mkDerivation { - pname = "criterion"; - version = "1.5.10.0"; - sha256 = "0akws27z3i9381xrb0p0h5qicz4w5nnxy8jq7gk68gi50gj0flxq"; - revision = "2"; - editedCabalFile = "11jdxivx971fbwrg8g0pq365kg6zr6gs06zc5jcjhj34pyr6xpdr"; - isLibrary = true; - isExecutable = true; - enableSeparateDataOutput = true; - libraryHaskellDepends = [ - aeson ansi-wl-pprint base base-compat-batteries binary - binary-orphans bytestring cassava code-page containers - criterion-measurement deepseq directory exceptions filepath Glob - js-chart microstache mtl mwc-random optparse-applicative parsec - statistics text time transformers transformers-compat vector - vector-algorithms - ]; - executableHaskellDepends = [ - base base-compat-batteries optparse-applicative - ]; - testHaskellDepends = [ - aeson base base-compat base-compat-batteries bytestring deepseq - directory HUnit QuickCheck statistics tasty tasty-hunit - tasty-quickcheck vector - ]; - description = "Robust, reliable performance measurement and analysis"; - license = lib.licenses.bsd3; - }) {}; - - "criterion_1_5_11_0" = callPackage ({ mkDerivation, aeson, ansi-wl-pprint, base, base-compat , base-compat-batteries, binary, binary-orphans, bytestring , cassava, code-page, containers, criterion-measurement, deepseq @@ -67046,7 +66832,6 @@ self: { ]; description = "Robust, reliable performance measurement and analysis"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "criterion-cmp" = callPackage @@ -67883,10 +67668,8 @@ self: { }: mkDerivation { pname = "cryptohash-md5"; - version = "0.11.100.1"; - sha256 = "1y8q7s2bn4gdknw1wjikdnar2b5pgz3nv3220lxrlgpsf23x82vi"; - revision = "6"; - editedCabalFile = "191nvffcrlyvr5dq99bbdxxl2qx44bla9adkhklyknf7ipqdd4yj"; + version = "0.11.101.0"; + sha256 = "018g13hkmq5782i24b4518hcd926fl6x6fh5hd7b9wlxwc5dn21v"; libraryHaskellDepends = [ base bytestring ]; testHaskellDepends = [ base base16-bytestring bytestring pureMD5 tasty tasty-hunit @@ -67918,33 +67701,6 @@ self: { }) {}; "cryptohash-sha256" = callPackage - ({ mkDerivation, base, base16-bytestring, bytestring, criterion - , cryptohash-sha256-pure, SHA, tasty, tasty-hunit, tasty-quickcheck - }: - mkDerivation { - pname = "cryptohash-sha256"; - version = "0.11.102.0"; - sha256 = "0685s4hfighzywvvn05cfff5bl2xz3wq0pfncv6zca4iba3ykmla"; - revision = "1"; - editedCabalFile = "0v5ppc7r2lxbk49h1kwj4b5vyb1dw2fnppykvp5m9rm0p3vhlykr"; - configureFlags = [ "-fuse-cbits" ]; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ base bytestring ]; - testHaskellDepends = [ - base base16-bytestring bytestring SHA tasty tasty-hunit - tasty-quickcheck - ]; - benchmarkHaskellDepends = [ - base bytestring criterion cryptohash-sha256-pure SHA - ]; - description = "Fast, pure and practical SHA-256 implementation"; - license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; - }) {cryptohash-sha256-pure = null;}; - - "cryptohash-sha256_0_11_102_1" = callPackage ({ mkDerivation, base, base16-bytestring, bytestring, criterion , SHA, tasty, tasty-hunit, tasty-quickcheck }: @@ -67963,7 +67719,6 @@ self: { benchmarkHaskellDepends = [ base bytestring criterion SHA ]; description = "Fast, pure and practical SHA-256 implementation"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "cryptohash-sha512" = callPackage @@ -68265,8 +68020,8 @@ self: { }: mkDerivation { pname = "csound-catalog"; - version = "0.7.5"; - sha256 = "1ly2s8lxy4wdcvkvsj9nw71r5dbsxpb0z8kzvywj9a5clqid109y"; + version = "0.7.6"; + sha256 = "0gida0g314hl8nyn5ybbv57yjf10mhjmsdmhk5vgblvhnc95ks36"; libraryHaskellDepends = [ base csound-expression csound-sampler sharc-timbre transformers ]; @@ -68311,8 +68066,8 @@ self: { }: mkDerivation { pname = "csound-expression-dynamic"; - version = "0.3.8"; - sha256 = "0q94d228zsjrnjzl3w11i4cqdnx3w1mcvsrf3w6jrvysrn1zskbz"; + version = "0.3.9"; + sha256 = "0cj1g7x06y9b8dky6k2dixv8gxxrcdjvlr8big5fld34w8k39cn6"; libraryHaskellDepends = [ array base Boolean containers data-default data-fix data-fix-cse deriving-compat hashable transformers wl-pprint @@ -68782,8 +68537,8 @@ self: { }: mkDerivation { pname = "cuckoo"; - version = "0.3.0"; - sha256 = "11p7f1br9jyjdwaviy94xwq1jg3kgq5q1pqls20sakgm1f71axls"; + version = "0.3.1"; + sha256 = "0zyba60p70qfg24vlas0yp9fqwwrpiqksp5jq0p1qrmrcv9jyx6n"; libraryHaskellDepends = [ base bytestring hashes primitive random ]; @@ -70986,6 +70741,8 @@ self: { pname = "data-fix"; version = "0.3.2"; sha256 = "1k0rcbb6dzv0ggdxqa2bh4jr829y0bczjrg98mrk5733q0xjs5rs"; + revision = "2"; + editedCabalFile = "0ymn341kg2c1wf1vp04v25bpnf857krhv91q4kl7b2k4h5ipf2g9"; libraryHaskellDepends = [ base deepseq hashable ]; description = "Fixpoint data types"; license = lib.licenses.bsd3; @@ -71130,8 +70887,8 @@ self: { }: mkDerivation { pname = "data-interval"; - version = "2.1.0"; - sha256 = "0f4dgpqmp4y9fidlb3z5dlcmv0qb6pqbxbf57jjjz49r7g6adzlq"; + version = "2.1.1"; + sha256 = "1gxdf1pi54s9fvxgp112b0l9f4q4r29f03caz04wbhv1f6cbs912"; libraryHaskellDepends = [ base containers deepseq extended-reals hashable lattices ]; @@ -71453,17 +71210,6 @@ self: { }) {}; "data-or" = callPackage - ({ mkDerivation, base }: - mkDerivation { - pname = "data-or"; - version = "1.0.0.5"; - sha256 = "0wp6qqq6k1zbdw9bv9gkzdiz6y8wp8r7zsqbjh54c43j3i7vdvwx"; - libraryHaskellDepends = [ base ]; - description = "A data type for non-exclusive disjunction"; - license = lib.licenses.bsd3; - }) {}; - - "data-or_1_0_0_7" = callPackage ({ mkDerivation, base }: mkDerivation { pname = "data-or"; @@ -71472,7 +71218,6 @@ self: { libraryHaskellDepends = [ base ]; description = "A data type for non-exclusive disjunction"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "data-ordlist" = callPackage @@ -73261,8 +73006,8 @@ self: { }: mkDerivation { pname = "dear-imgui"; - version = "1.2.1"; - sha256 = "1wciaz2yxg7nk4hfc9a7gr2r5gx3fjp9h320lbx4a07zz6q3hqh4"; + version = "1.2.2"; + sha256 = "095mv60dvikw1pmj59kwq6p9s8yp04zd8ndbcq3fdia8w0razrxf"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -73559,6 +73304,30 @@ self: { broken = true; }) {}; + "decision-diagrams" = callPackage + ({ mkDerivation, base, containers, hashable, hashtables, intern + , mwc-random, primitive, QuickCheck, random, reflection, statistics + , tasty, tasty-hunit, tasty-quickcheck, tasty-th + , unordered-containers + }: + mkDerivation { + pname = "decision-diagrams"; + version = "0.1.0.0"; + sha256 = "056990c7bv7y4f51743jwqgdqpklgljn2v5g942wrzp71bkmgm9q"; + revision = "1"; + editedCabalFile = "18m9mxalyakxffjjkbh19vnnl7ix2slhyqdmcyvf5jm1r54d1v0j"; + libraryHaskellDepends = [ + base containers hashable hashtables intern mwc-random primitive + random reflection unordered-containers + ]; + testHaskellDepends = [ + base containers mwc-random QuickCheck statistics tasty tasty-hunit + tasty-quickcheck tasty-th + ]; + description = "Binary Decision Diagrams (BDD) and Zero-suppressed Binary Decision Diagrams (ZDD)"; + license = lib.licenses.bsd3; + }) {}; + "declarative" = callPackage ({ mkDerivation, base, hasty-hamiltonian, kan-extensions, lens , mcmc-types, mighty-metropolis, mwc-probability, pipes, primitive @@ -74280,17 +74049,19 @@ self: { }) {}; "dep-t" = callPackage - ({ mkDerivation, base, doctest, mtl, rank2classes, sop-core, tasty - , tasty-hunit, template-haskell, transformers, unliftio-core + ({ mkDerivation, aeson, barbies, base, bytestring, containers + , doctest, mtl, rank2classes, sop-core, tasty, tasty-hunit + , template-haskell, text, transformers, unliftio-core }: mkDerivation { pname = "dep-t"; - version = "0.4.5.0"; - sha256 = "0hmyfq7xkz3l7d2f3d9ax782b6h0vvq1cfcxxnj1dg29hrnpd1ja"; + version = "0.4.6.0"; + sha256 = "0mhc5i54r8zbcq9wqmf25761b8dinkldcxq2x9f1l6mdy3zswsg3"; libraryHaskellDepends = [ base mtl transformers unliftio-core ]; testHaskellDepends = [ - base doctest mtl rank2classes sop-core tasty tasty-hunit - template-haskell transformers unliftio-core + aeson barbies base bytestring containers doctest mtl rank2classes + sop-core tasty tasty-hunit template-haskell text transformers + unliftio-core ]; description = "Reader-like monad transformer for dependency injection"; license = lib.licenses.bsd3; @@ -74299,22 +74070,22 @@ self: { }) {}; "dep-t-advice" = callPackage - ({ mkDerivation, barbies, base, criterion, dep-t, doctest, mtl - , rank2classes, sop-core, tasty, tasty-hunit, template-haskell - , transformers + ({ mkDerivation, aeson, barbies, base, containers, criterion, dep-t + , doctest, mtl, rank2classes, sop-core, tasty, tasty-hunit + , template-haskell, text, transformers }: mkDerivation { pname = "dep-t-advice"; - version = "0.4.6.1"; - sha256 = "1afr4qjzxvf4h56l0m1zjxy2m9vxs51wj1rcvxpqr3q9hvdg17vx"; + version = "0.4.7.0"; + sha256 = "0ry2bvqb030hwslxbidinjxb6fl3v8wah42r52xp92yxj10a9dq0"; libraryHaskellDepends = [ base dep-t sop-core transformers ]; testHaskellDepends = [ - barbies base dep-t doctest mtl rank2classes sop-core tasty - tasty-hunit template-haskell transformers + aeson barbies base containers dep-t doctest mtl rank2classes + sop-core tasty tasty-hunit template-haskell text transformers ]; benchmarkHaskellDepends = [ base criterion dep-t mtl rank2classes sop-core template-haskell - transformers + text transformers ]; description = "Giving good advice to functions in a DepT environment"; license = lib.licenses.bsd3; @@ -74367,8 +74138,8 @@ self: { pname = "dependent-literals"; version = "0.1.1.0"; sha256 = "0dw2xc5l8cmhsmr2akyyhyfj8m3qx02pz81fn52ii9mkhzs6rcjb"; - revision = "2"; - editedCabalFile = "1l3fns5gi8l5bav6z3ymvp93i1cq59f9b6p3dc496c0rmkh01kjq"; + revision = "5"; + editedCabalFile = "1z2afnvgdkw6swvc1mavd8rzqcq1s124n0j13n7zd9pcjha9i4nb"; libraryHaskellDepends = [ base fin-int numeric-kinds sint snumber tagged wrapped ]; @@ -74384,8 +74155,8 @@ self: { pname = "dependent-literals-plugin"; version = "0.1.0.1"; sha256 = "1rpjlcv3g150rcmxidn48n25xxv2ghdz4x9jnap1swkz0fb10i3a"; - revision = "2"; - editedCabalFile = "1bfsv402cxwhwz22gqj8p0grr4wb9ynsd2swnwy1m6xdsfi1wdy4"; + revision = "4"; + editedCabalFile = "1330hiqvcvl73y8pd3wpsqicvysl8l0mizkr8my7a628fwh6018p"; libraryHaskellDepends = [ base ghc syb ]; testHaskellDepends = [ base dependent-literals fin-int numeric-kinds short-vec sint @@ -76445,8 +76216,6 @@ self: { ]; description = "HTML5 canvas backend for diagrams drawing EDSL"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "diagrams-contrib" = callPackage @@ -76478,25 +76247,6 @@ self: { }) {}; "diagrams-core" = callPackage - ({ mkDerivation, adjunctions, base, containers, distributive - , dual-tree, lens, linear, monoid-extras, mtl, profunctors - , semigroups, unordered-containers - }: - mkDerivation { - pname = "diagrams-core"; - version = "1.4.2"; - sha256 = "0qgb43vy23g4fxh3nmxfq6jyp34imqvkhgflaa6rz0iq6d60gl43"; - revision = "1"; - editedCabalFile = "0w8mpy0z8kmx4l7cg8sgc1hyixysjfqffdgmnxy5p04airjlbpj7"; - libraryHaskellDepends = [ - adjunctions base containers distributive dual-tree lens linear - monoid-extras mtl profunctors semigroups unordered-containers - ]; - description = "Core libraries for diagrams EDSL"; - license = lib.licenses.bsd3; - }) {}; - - "diagrams-core_1_5_0" = callPackage ({ mkDerivation, adjunctions, base, containers, distributive , dual-tree, lens, linear, monoid-extras, mtl, profunctors , semigroups, unordered-containers @@ -76513,7 +76263,6 @@ self: { ]; description = "Core libraries for diagrams EDSL"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "diagrams-graphviz" = callPackage @@ -76622,39 +76371,6 @@ self: { }) {}; "diagrams-lib" = callPackage - ({ mkDerivation, active, adjunctions, array, base, bytestring - , cereal, colour, containers, criterion, data-default-class - , deepseq, diagrams-core, diagrams-solve, directory, distributive - , dual-tree, exceptions, filepath, fingertree, fsnotify, hashable - , intervals, JuicyPixels, lens, linear, monoid-extras, mtl - , numeric-extras, optparse-applicative, process, profunctors - , QuickCheck, semigroups, tagged, tasty, tasty-hunit - , tasty-quickcheck, text, transformers, unordered-containers - }: - mkDerivation { - pname = "diagrams-lib"; - version = "1.4.3"; - sha256 = "0gqrcyjyp3p78vmfxvhfjbkkl2xvwcv3qyyinbdcmalb5zb8vyy6"; - revision = "1"; - editedCabalFile = "0cqhqm2nz2ls00pfhx8hz6z6g17qhl380h24wp4d6l5msiw7gxq4"; - libraryHaskellDepends = [ - active adjunctions array base bytestring cereal colour containers - data-default-class diagrams-core diagrams-solve directory - distributive dual-tree exceptions filepath fingertree fsnotify - hashable intervals JuicyPixels lens linear monoid-extras mtl - optparse-applicative process profunctors semigroups tagged text - transformers unordered-containers - ]; - testHaskellDepends = [ - base deepseq diagrams-solve distributive lens numeric-extras - QuickCheck tasty tasty-hunit tasty-quickcheck - ]; - benchmarkHaskellDepends = [ base criterion diagrams-core ]; - description = "Embedded domain-specific language for declarative graphics"; - license = lib.licenses.bsd3; - }) {}; - - "diagrams-lib_1_4_4" = callPackage ({ mkDerivation, active, adjunctions, array, base, bytestring , cereal, colour, containers, criterion, data-default-class , deepseq, diagrams-core, diagrams-solve, directory, distributive @@ -76685,7 +76401,6 @@ self: { benchmarkHaskellDepends = [ base criterion diagrams-core ]; description = "Embedded domain-specific language for declarative graphics"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "diagrams-pandoc" = callPackage @@ -78041,6 +77756,8 @@ self: { pname = "directory"; version = "1.3.7.0"; sha256 = "041dnqqnc1dadasqyhivpa7rnhw3i08gq5bwj1kfz7lhlihbv1lz"; + revision = "1"; + editedCabalFile = "048d5ccrd697cvb3kb3aahqkzwcizh275d44j09rvrh08xqzjnad"; libraryHaskellDepends = [ base filepath time unix ]; testHaskellDepends = [ base filepath time unix ]; description = "Platform-agnostic library for filesystem operations"; @@ -80179,24 +79896,6 @@ self: { }) {}; "doclayout" = callPackage - ({ mkDerivation, base, criterion, mtl, safe, tasty, tasty-golden - , tasty-hunit, text - }: - mkDerivation { - pname = "doclayout"; - version = "0.3.0.2"; - sha256 = "1hfqagf5rmdjjx3xzx153d769b2vwarmyx7k7cwh872cgasndb3q"; - enableSeparateDataOutput = true; - libraryHaskellDepends = [ base mtl safe text ]; - testHaskellDepends = [ - base mtl tasty tasty-golden tasty-hunit text - ]; - benchmarkHaskellDepends = [ base criterion mtl text ]; - description = "A prettyprinting library for laying out text documents"; - license = lib.licenses.bsd3; - }) {}; - - "doclayout_0_3_1_1" = callPackage ({ mkDerivation, base, containers, criterion, emojis, mtl, safe , tasty, tasty-golden, tasty-hunit, tasty-quickcheck, text }: @@ -80213,7 +79912,6 @@ self: { benchmarkHaskellDepends = [ base criterion mtl text ]; description = "A prettyprinting library for laying out text documents"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "docopt" = callPackage @@ -81474,7 +81172,6 @@ self: { ]; description = "a lightweight DNS proxy server"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "drClickOn" = callPackage @@ -82094,24 +81791,6 @@ self: { }) {}; "dual-tree" = callPackage - ({ mkDerivation, base, monoid-extras, newtype-generics, QuickCheck - , semigroups, testing-feat - }: - mkDerivation { - pname = "dual-tree"; - version = "0.2.2.1"; - sha256 = "17kdfnf0df0z5pkiifxrlmyd1xd7hjjaazd2kzyajl0gd00vbszx"; - libraryHaskellDepends = [ - base monoid-extras newtype-generics semigroups - ]; - testHaskellDepends = [ - base monoid-extras QuickCheck semigroups testing-feat - ]; - description = "Rose trees with cached and accumulating monoidal annotations"; - license = lib.licenses.bsd3; - }) {}; - - "dual-tree_0_2_3_0" = callPackage ({ mkDerivation, base, monoid-extras, newtype-generics, QuickCheck , semigroups, testing-feat }: @@ -82129,7 +81808,6 @@ self: { ]; description = "Rose trees with cached and accumulating monoidal annotations"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "dualizer" = callPackage @@ -82310,14 +81988,14 @@ self: { maintainers = with lib.maintainers; [ turion ]; }) {}; - "dunai_0_8_0" = callPackage + "dunai_0_8_1" = callPackage ({ mkDerivation, base, MonadRandom, simple-affine-space, tasty , tasty-hunit, transformers, transformers-base }: mkDerivation { pname = "dunai"; - version = "0.8.0"; - sha256 = "06xdn1fqfbpffdcpf9mmkl56797bdh9ijwg7nm98fqhwq0d4jnkv"; + version = "0.8.1"; + sha256 = "1zijhrk50cyyrb6jqlf8q0hh87lbfy5k9iy6w2az66nm89ckxrv9"; libraryHaskellDepends = [ base MonadRandom simple-affine-space transformers transformers-base ]; @@ -82348,8 +82026,8 @@ self: { ({ mkDerivation, base, dunai, normaldistribution, QuickCheck }: mkDerivation { pname = "dunai-test"; - version = "0.8.0"; - sha256 = "1n5a30iw0pr94fl1jparlmf0lnw4md4l3r9aq56247cz1npnfaqh"; + version = "0.8.1"; + sha256 = "1iy989wz4jnn9g892p7n0f1hj2hd61a01vxnqz5fr0yppbsckp3h"; libraryHaskellDepends = [ base dunai normaldistribution QuickCheck ]; @@ -83225,6 +82903,28 @@ self: { license = lib.licenses.bsd3; }) {}; + "easy-logger" = callPackage + ({ mkDerivation, array, auto-update, base, bytestring, containers + , directory, hspec, QuickCheck, quickcheck-assertions + , template-haskell, text, unix-compat, unix-time + }: + mkDerivation { + pname = "easy-logger"; + version = "0.1.0.4"; + sha256 = "040q410p9i9vwydnsa5n7ycy1bq0gr1p3jvmv1y52hh96bcsbdg1"; + libraryHaskellDepends = [ + array auto-update base bytestring containers template-haskell text + unix-compat unix-time + ]; + testHaskellDepends = [ + array auto-update base bytestring containers directory hspec + QuickCheck quickcheck-assertions template-haskell text unix-compat + unix-time + ]; + description = "Logging made easy"; + license = lib.licenses.bsd3; + }) {}; + "easyjson" = callPackage ({ mkDerivation, base, mtl, parsec, text, unordered-containers , vector @@ -84811,14 +84511,14 @@ self: { license = lib.licenses.bsd3; }) {}; - "eliminators_0_8" = callPackage + "eliminators_0_9" = callPackage ({ mkDerivation, base, extra, hspec, hspec-discover, singleton-nats , singletons-base, template-haskell, th-abstraction, th-desugar }: mkDerivation { pname = "eliminators"; - version = "0.8"; - sha256 = "00prqf3qnhsswigcx87nq9dfaq9vjvzgcgbpnxrpgw9k36p9mdh2"; + version = "0.9"; + sha256 = "118bd51hfbh29yhs9ai3srk431avwsmccm1500mp21fbwxq8phsj"; libraryHaskellDepends = [ base extra singleton-nats singletons-base template-haskell th-abstraction th-desugar @@ -85219,8 +84919,8 @@ self: { }: mkDerivation { pname = "elm-syntax"; - version = "0.3.1.0"; - sha256 = "172xc5nvk2091vbd23ia6dp36d8v2jammb4hvnbk4365y7cgas2l"; + version = "0.3.2.0"; + sha256 = "0liy0h4w6yx0ksnb05ilq9w3qb1rgpiqmqpc5iq2k4h18z61vza2"; libraryHaskellDepends = [ base bound deriving-compat hashable prettyprinter text unordered-containers @@ -85979,18 +85679,6 @@ self: { }) {}; "emojis" = callPackage - ({ mkDerivation, base, containers, HUnit, text }: - mkDerivation { - pname = "emojis"; - version = "0.1.1"; - sha256 = "1by9mr3vrqhfzdqv5vsqh5nfhkzpz4fibnk6xcw4wa0k8zvyzrvr"; - libraryHaskellDepends = [ base containers text ]; - testHaskellDepends = [ base HUnit text ]; - description = "Conversion between emoji characters and their names"; - license = lib.licenses.bsd3; - }) {}; - - "emojis_0_1_2" = callPackage ({ mkDerivation, base, containers, HUnit, text }: mkDerivation { pname = "emojis"; @@ -86000,7 +85688,6 @@ self: { testHaskellDepends = [ base HUnit text ]; description = "Conversion between emoji characters and their names"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "empty" = callPackage @@ -86307,10 +85994,8 @@ self: { }: mkDerivation { pname = "entropy"; - version = "0.4.1.6"; - sha256 = "0qmzz0zgad13zl0kjrxz6cxg8ckn2w8saas2a2j72vbafpzmkixd"; - revision = "1"; - editedCabalFile = "0jyyyn1cfi1cjisbgym90nw2vx2082ghvwg54ibnjzbii9aj7fj9"; + version = "0.4.1.7"; + sha256 = "1vp99gqavv5hg09zs2v0p74cxn135z1bq7qhxbk47d36npz3s1m9"; setupHaskellDepends = [ base Cabal directory filepath process ]; libraryHaskellDepends = [ base bytestring unix ]; description = "A platform independent entropy source"; @@ -86783,6 +86468,7 @@ self: { testToolDepends = [ hspec-discover ]; description = "Provides FromEnv in envy instance for Record of extensible"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "epanet-haskell" = callPackage @@ -86990,6 +86676,18 @@ self: { license = lib.licenses.bsd3; }) {}; + "eq_4_3" = callPackage + ({ mkDerivation, base, semigroupoids }: + mkDerivation { + pname = "eq"; + version = "4.3"; + sha256 = "0p3189kq045vxh0h7is81q0qahaghni810x68g31yml05md37giz"; + libraryHaskellDepends = [ base semigroupoids ]; + description = "Leibnizian equality"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "equal-files" = callPackage ({ mkDerivation, base, bytestring, explicit-exception, filemanip , transformers, utility-ht @@ -87014,10 +86712,8 @@ self: { }: mkDerivation { pname = "equational-reasoning"; - version = "0.7.0.0"; - sha256 = "0l6gyq43byh6cy2pblb9a4qjy7w5k9maa97c076dxlsf53myj01h"; - revision = "2"; - editedCabalFile = "0zlcd62kapcybli65w47mb1kg5fnyzgdnf7kr8y8qgslg0lidzpp"; + version = "0.7.0.1"; + sha256 = "1xp5vmz19idc29xidr7q65hsnhfnl3ca80hxxfllsqpyyh32qlhn"; libraryHaskellDepends = [ base containers template-haskell th-desugar void ]; @@ -87250,12 +86946,13 @@ self: { }) {}; "error" = callPackage - ({ mkDerivation, base, text }: + ({ mkDerivation, base, doctest, text }: mkDerivation { pname = "error"; - version = "0.1.0.0"; - sha256 = "145gxlcqnaxvsrw54xijigfh5ffkh0d6i7r239ysy09ci8ybzfqx"; + version = "0.2.0.0"; + sha256 = "0mxg2ky9j46xd378a8z2jl24pn9jvqjay22n3l9yfm7zwrmqrz35"; libraryHaskellDepends = [ base text ]; + testHaskellDepends = [ base doctest ]; description = "The canonical error type"; license = lib.licenses.mit; }) {}; @@ -87780,6 +87477,23 @@ self: { broken = true; }) {}; + "esqueleto-streaming" = callPackage + ({ mkDerivation, base, conduit, esqueleto, persistent-postgresql + , persistent-postgresql-streaming, resourcet, transformers + }: + mkDerivation { + pname = "esqueleto-streaming"; + version = "0.1.0.0"; + sha256 = "07qmnms0jmqqdn0d3ia1dl3alpggs1mj62gppy0ys8myac0wdk1r"; + libraryHaskellDepends = [ + base conduit esqueleto persistent-postgresql + persistent-postgresql-streaming resourcet transformers + ]; + description = "Memory-constant streaming of Esqueleto results from PostgreSQL"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "ess" = callPackage ({ mkDerivation, base }: mkDerivation { @@ -88747,6 +88461,8 @@ self: { executableHaskellDepends = [ aeson base filepath text ]; description = "Visualise an eventlog"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "eventloop" = callPackage @@ -89046,19 +88762,19 @@ self: { ({ mkDerivation, base }: mkDerivation { pname = "exact-combinatorics"; - version = "0.2.0.9"; - sha256 = "1ay98m9prmd1pi85v2n0rs2432hzb7mxizzg79sv0ln24an8amvj"; + version = "0.2.0.10"; + sha256 = "08xdn2dl9r1zkphm9ja3lp4qin9cn889q184lsmk432icbvw5r2h"; libraryHaskellDepends = [ base ]; description = "Efficient exact computation of combinatoric functions"; license = lib.licenses.bsd3; }) {}; - "exact-combinatorics_0_2_0_10" = callPackage + "exact-combinatorics_0_2_0_11" = callPackage ({ mkDerivation, base }: mkDerivation { pname = "exact-combinatorics"; - version = "0.2.0.10"; - sha256 = "08xdn2dl9r1zkphm9ja3lp4qin9cn889q184lsmk432icbvw5r2h"; + version = "0.2.0.11"; + sha256 = "0qrhgd468ljpnfciaxzimmn1rhvapcrrsy4wb2r08hn3vjflmd3n"; libraryHaskellDepends = [ base ]; description = "Efficient exact computation of combinatoric functions"; license = lib.licenses.bsd3; @@ -89236,6 +88952,8 @@ self: { pname = "exception-transformers"; version = "0.4.0.10"; sha256 = "11ghvxm32q3kzccbngz4068j2rrrhs03amlaq5i5r1vankrbxg0n"; + revision = "1"; + editedCabalFile = "03f69b8i1gavjk94zj6krkzqk0360sngq0hzi291pmhghscsqcn0"; libraryHaskellDepends = [ base transformers transformers-compat ]; testHaskellDepends = [ base HUnit test-framework test-framework-hunit transformers @@ -89800,15 +89518,14 @@ self: { }: mkDerivation { pname = "exon"; - version = "0.2.0.0"; - sha256 = "1kd1gf4yrbjpd62arrb74x5sri1xvjx88lk4dah0mbx1f19129ar"; + version = "0.2.0.1"; + sha256 = "0pdggj0yc863xf6ip8j97ix6nvj07q7x9sp4ancxcvry892kglwm"; libraryHaskellDepends = [ base flatparse haskell-src-exts haskell-src-meta relude template-haskell text ]; testHaskellDepends = [ - base flatparse haskell-src-exts haskell-src-meta hedgehog relude - tasty tasty-hedgehog template-haskell text + base hedgehog tasty tasty-hedgehog template-haskell text ]; description = "Monoidal Quasiquote Interpolation"; license = "BSD-2-Clause-Patent"; @@ -90391,6 +90108,8 @@ self: { pname = "extended-reals"; version = "0.2.4.0"; sha256 = "19df7zlm8kisihmnpg3ni5qg4p0vkilsny0ngch0b8b0pr56cb0c"; + revision = "1"; + editedCabalFile = "07qsnn05q9n2l4jh7agql44l2z7rqnwdcp9bssri4chs0jvk15rg"; libraryHaskellDepends = [ base deepseq hashable ]; testHaskellDepends = [ base deepseq HUnit QuickCheck tasty tasty-hunit tasty-quickcheck @@ -90403,23 +90122,25 @@ self: { "extensible" = callPackage ({ mkDerivation, aeson, base, bytestring, cassava, comonad , constraints, deepseq, ghc-prim, hashable, incremental, lens - , membership, monad-skeleton, prettyprinter, primitive, profunctors - , QuickCheck, StateVar, tagged, template-haskell, text, th-lift - , transformers, unordered-containers, vector + , membership, prettyprinter, primitive, profunctors, QuickCheck + , StateVar, tagged, template-haskell, text, th-lift, transformers + , unordered-containers, vector }: mkDerivation { pname = "extensible"; - version = "0.8.2"; - sha256 = "133yid7snb48n4rn15p6nsk2h1shbiw647d5fvapn3lnsb4ymqgv"; + version = "0.8.3"; + sha256 = "1cwh7a6mipyh4a7vs1394wmmbm1ms5cs9snl5nd1mg1v455ykcmb"; libraryHaskellDepends = [ aeson base bytestring cassava comonad constraints deepseq ghc-prim - hashable incremental membership monad-skeleton prettyprinter - primitive profunctors QuickCheck StateVar tagged template-haskell - text th-lift transformers unordered-containers vector + hashable incremental membership prettyprinter primitive profunctors + QuickCheck StateVar tagged template-haskell text th-lift + transformers unordered-containers vector ]; testHaskellDepends = [ base lens QuickCheck template-haskell ]; description = "Extensible, efficient, optics-friendly data types and effects"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "extensible-data" = callPackage @@ -90517,8 +90238,8 @@ self: { }: mkDerivation { pname = "extensible-skeleton"; - version = "0"; - sha256 = "0bv6589p8cpzsr167yi98vm0bzkcfgazkxbj35f74ykh8zwqlqfl"; + version = "0.0.1"; + sha256 = "10pjnjn60fcmx08vgkdvp8lysd3gz0c5rk829cf2sqk279x8h07h"; libraryHaskellDepends = [ base exceptions extensible membership monad-skeleton mtl profunctors resourcet template-haskell transformers @@ -91225,7 +90946,7 @@ self: { broken = true; }) {}; - "faktory_1_1_1_0" = callPackage + "faktory_1_1_2_0" = callPackage ({ mkDerivation, aeson, aeson-casing, aeson-qq, async, base , bytestring, connection, cryptonite, errors, hspec, markdown-unlit , megaparsec, memory, mtl, network, random, safe-exceptions @@ -91233,8 +90954,8 @@ self: { }: mkDerivation { pname = "faktory"; - version = "1.1.1.0"; - sha256 = "1lh427lq991pclzqr112dw4jjalcxpkwl440ygg2fhl6bgn082wx"; + version = "1.1.2.0"; + sha256 = "0rsypmqy6gkpsjgzzc20wy5jjw13bb4j2zsxwn9zchyihfpak36a"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -93849,6 +93570,8 @@ self: { pname = "fin-int"; version = "0.2.0"; sha256 = "0ra5lcd3ybmv1a0l7bisjlgi7b8mywa6c6pj7n82ppyi6rqssdlh"; + revision = "2"; + editedCabalFile = "0c95hcd7shv5jhx7dg0riq3hqikyb1xgzj2dd7442hw8hglqkcxs"; libraryHaskellDepends = [ attenuation base data-default-class deepseq portray portray-diff QuickCheck sint @@ -94155,8 +93878,8 @@ self: { pname = "finite-table"; version = "0.1.0.1"; sha256 = "17bn5wmv5sz89yh3lh39i1armi168wxxnz6l9smcfmw334lidlv6"; - revision = "1"; - editedCabalFile = "17marqdap2mhlv90khnhygy78mn4gj9068gbz2ld4xv7q2kf3vlm"; + revision = "3"; + editedCabalFile = "0bp43mbapcx4a2vvqfqs146faimafjm9h8vqjipcl2wwcfz46cca"; libraryHaskellDepends = [ adjunctions base cereal data-default-class deepseq distributive fin-int indexed-traversable lens portray portray-diff short-vec @@ -96135,12 +95858,10 @@ self: { ({ mkDerivation, base }: mkDerivation { pname = "fmr"; - version = "0.1"; - sha256 = "1hwi4f027pv1sy6pmanc0488xdy398iv50yapivyk2l9kipfnq3q"; - revision = "1"; - editedCabalFile = "0xg1q3bjfg9l6xv8cixzydsypjy7nsbirsb14vfpnp42m7ml5klq"; + version = "0.2"; + sha256 = "143zyw9ikyrbs4ixs8f7blrs57fxyahf02kbcq1j8xjh2qzzxzi3"; libraryHaskellDepends = [ base ]; - description = "Fake monadic records library"; + description = "Fields for Monadic Records library"; license = lib.licenses.bsd3; }) {}; @@ -97799,30 +97520,31 @@ self: { "freckle-app" = callPackage ({ mkDerivation, aeson, ansi-terminal, base, bytestring , case-insensitive, conduit, data-default, datadog, directory - , doctest, errors, exceptions, fast-logger, filepath, Glob, hspec - , hspec-core, hspec-expectations-lifted, hspec-junit-formatter - , http-client, http-conduit, http-link-header, http-types, immortal - , iproute, lens, lens-aeson, load-env, monad-control, monad-logger - , MonadRandom, mtl, network, network-uri, persistent - , persistent-postgresql, postgresql-simple, primitive, process - , resource-pool, retry, rio, temporary, text, time, transformers - , transformers-base, unliftio, unliftio-core, wai, wai-extra, yaml - , yesod, yesod-core + , doctest, ekg-core, errors, exceptions, fast-logger, filepath + , Glob, hspec, hspec-core, hspec-expectations-lifted + , hspec-junit-formatter, http-client, http-conduit + , http-link-header, http-types, immortal, iproute, lens, lens-aeson + , load-env, monad-control, monad-logger, MonadRandom, mtl, network + , network-uri, persistent, persistent-postgresql, postgresql-simple + , primitive, process, resource-pool, retry, rio, temporary, text + , time, transformers, transformers-base, unliftio, unliftio-core + , unordered-containers, wai, wai-extra, yaml, yesod, yesod-core }: mkDerivation { pname = "freckle-app"; - version = "1.0.0.4"; - sha256 = "0r3sfy7i796qjk3h7kigdj8c1gyrbzbwan7lb41r75h8bqx96p70"; + version = "1.0.1.0"; + sha256 = "1lak6iyid14wxydzs77jlwrayrwcg3n4favrf3qf3yd46306a2f3"; libraryHaskellDepends = [ aeson ansi-terminal base bytestring case-insensitive conduit - data-default datadog doctest errors exceptions fast-logger filepath - Glob hspec hspec-core hspec-expectations-lifted + data-default datadog doctest ekg-core errors exceptions fast-logger + filepath Glob hspec hspec-core hspec-expectations-lifted hspec-junit-formatter http-client http-conduit http-link-header http-types immortal iproute lens load-env monad-control monad-logger MonadRandom mtl network network-uri persistent persistent-postgresql postgresql-simple primitive process resource-pool retry rio text time transformers transformers-base - unliftio unliftio-core wai wai-extra yaml yesod yesod-core + unliftio unliftio-core unordered-containers wai wai-extra yaml + yesod yesod-core ]; testHaskellDepends = [ aeson base bytestring directory hspec http-types lens lens-aeson @@ -99542,6 +99264,8 @@ self: { pname = "functor-classes-compat"; version = "1.0.1"; sha256 = "0p6kwj1yimis0rg2gihwkgxkjj1psxy38hxa94gz5pd638314hi3"; + revision = "1"; + editedCabalFile = "0x8g977xgg9jj597kvn4h725kh3nvbwhxlh1iglp1vzn39v73n6f"; libraryHaskellDepends = [ base containers hashable unordered-containers vector ]; @@ -99549,6 +99273,18 @@ self: { license = lib.licenses.bsd3; }) {}; + "functor-classes-compat_2" = callPackage + ({ mkDerivation, base, containers }: + mkDerivation { + pname = "functor-classes-compat"; + version = "2"; + sha256 = "1icc2hnfbqphvxd9jqqyzd9dz1gmic84zvm85w0xp58v60babmq4"; + libraryHaskellDepends = [ base containers ]; + description = "Data.Functor.Classes instances for core packages"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "functor-combinators" = callPackage ({ mkDerivation, assoc, base, bifunctors, comonad, constraints , containers, contravariant, dependent-sum, deriving-compat, free @@ -100091,10 +99827,8 @@ self: { }: mkDerivation { pname = "futhark"; - version = "0.20.4"; - sha256 = "0yjm0s9risrc0aj1si8i403k6b1znr8szff1f8ksb5cr9j7nn7gn"; - revision = "1"; - editedCabalFile = "0kx2p48b56icbd1bf6y6qbqx7sb7r8d2lcjxb60khiz7ff8kqjw8"; + version = "0.20.5"; + sha256 = "0wdpi1lr6cglwig194i9l6jmb54lh5qhwfhx8nn7z2kmww0qpmbv"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -100118,6 +99852,46 @@ self: { license = lib.licenses.isc; }) {}; + "futhark_0_20_6" = callPackage + ({ mkDerivation, aeson, alex, ansi-terminal, array, base + , base16-bytestring, binary, blaze-html, bmp, bytestring + , bytestring-to-vector, cmark-gfm, containers, cryptohash-md5 + , directory, directory-tree, dlist, file-embed, filepath, free + , futhark-data, futhark-server, githash, half, happy, haskeline + , language-c-quote, mainland-pretty, megaparsec, mtl + , neat-interpolation, parallel, parser-combinators, process + , process-extras, QuickCheck, random, regex-tdfa, srcloc, tasty + , tasty-hunit, tasty-quickcheck, template-haskell, temporary + , terminal-size, text, time, transformers, vector + , vector-binary-instances, versions, zip-archive, zlib + }: + mkDerivation { + pname = "futhark"; + version = "0.20.6"; + sha256 = "1ysbxv597v1m1n655f5d8fvcx4mmxgip2858q81jv4lw9m3xg89l"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson ansi-terminal array base base16-bytestring binary blaze-html + bmp bytestring bytestring-to-vector cmark-gfm containers + cryptohash-md5 directory directory-tree dlist file-embed filepath + free futhark-data futhark-server githash half haskeline + language-c-quote mainland-pretty megaparsec mtl neat-interpolation + parallel process process-extras random regex-tdfa srcloc + template-haskell temporary terminal-size text time transformers + vector vector-binary-instances versions zip-archive zlib + ]; + libraryToolDepends = [ alex happy ]; + executableHaskellDepends = [ base text ]; + testHaskellDepends = [ + base containers megaparsec mtl parser-combinators QuickCheck tasty + tasty-hunit tasty-quickcheck text + ]; + description = "An optimising compiler for a functional, array-oriented language"; + license = lib.licenses.isc; + hydraPlatforms = lib.platforms.none; + }) {}; + "futhark-data" = callPackage ({ mkDerivation, base, binary, bytestring, bytestring-to-vector , containers, half, megaparsec, mtl, QuickCheck, scientific, tasty @@ -100146,8 +99920,8 @@ self: { }: mkDerivation { pname = "futhark-server"; - version = "1.1.1.0"; - sha256 = "1iqrpvh79y6a3b56ybafyxc98mlilnx928aqclx6h78hs10qlysy"; + version = "1.1.2.0"; + sha256 = "09kc04j5lajzc4k335sc9vcj0i0is939qvrkk10k4ib9a64nrli1"; libraryHaskellDepends = [ base binary bytestring directory futhark-data mtl process temporary text @@ -101669,6 +101443,23 @@ self: { license = lib.licenses.bsd3; }) {}; + "generic-aeson_0_2_0_13" = callPackage + ({ mkDerivation, aeson, attoparsec, base, generic-deriving, mtl + , tagged, text, unordered-containers, vector + }: + mkDerivation { + pname = "generic-aeson"; + version = "0.2.0.13"; + sha256 = "0w5xp1rfg3r90ja1f0s48i4x7yyynfv52p6b9ncsdqyrq3y9qvl0"; + libraryHaskellDepends = [ + aeson attoparsec base generic-deriving mtl tagged text + unordered-containers vector + ]; + description = "Derivation of Aeson instances using GHC generics"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "generic-arbitrary" = callPackage ({ mkDerivation, base, QuickCheck }: mkDerivation { @@ -103414,8 +103205,8 @@ self: { }: mkDerivation { pname = "gerrit"; - version = "0.1.1.0"; - sha256 = "0qkrcf0m2rq31sqd3fqij5c0yfp5pnzj2fx3dh9cwi7dqz24jwsg"; + version = "0.1.4.0"; + sha256 = "0d5hqjygh3dcqknbiyj4pwis46sygl2a7gkb6aqfb46nxz11a5r7"; libraryHaskellDepends = [ aeson aeson-casing base bytestring containers http-client http-client-openssl text time @@ -103577,25 +103368,26 @@ self: { license = lib.licenses.bsd3; }) {}; - "ghc_8_10_2" = callPackage + "ghc_9_2_1" = callPackage ({ mkDerivation, array, base, binary, bytestring, containers - , deepseq, directory, filepath, ghc-boot, ghc-boot-th, ghc-heap - , ghci, hpc, process, template-haskell, terminfo, time - , transformers, unix + , deepseq, directory, exceptions, filepath, ghc-boot, ghc-heap + , ghci, hpc, parsec, process, template-haskell, terminfo, time + , transformers, unbuildable, unix }: mkDerivation { pname = "ghc"; - version = "8.10.2"; - sha256 = "0xh6ll9x8iv74cv5l6q9q3qwm0qw0qkfxzh7dj3b6yzh10b63g8z"; + version = "9.2.1"; + sha256 = "0zj1bvrhbkxhnbzia9lcwz9h8d7vrcfddiqfvycbz77sr30505kx"; libraryHaskellDepends = [ - array base binary bytestring containers deepseq directory filepath - ghc-boot ghc-boot-th ghc-heap ghci hpc process template-haskell - terminfo time transformers unix + array base binary bytestring containers deepseq directory + exceptions filepath ghc-boot ghc-heap ghci hpc parsec process + template-haskell terminfo time transformers unbuildable unix ]; description = "The GHC API"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - }) {}; + broken = true; + }) {unbuildable = null;}; "ghc-api-compat_8_6" = callPackage ({ mkDerivation, ghc }: @@ -103646,6 +103438,17 @@ self: { license = lib.licenses.bsd3; }) {}; + "ghc-bignum_1_2" = callPackage + ({ mkDerivation }: + mkDerivation { + pname = "ghc-bignum"; + version = "1.2"; + sha256 = "0ldg53hirqz6yszacpajq6pf407bflyk46wjhx5g8n2cjz54vv3p"; + description = "GHC BigNum library"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "ghc-bignum-orphans" = callPackage ({ mkDerivation, base, ghc-bignum }: mkDerivation { @@ -103659,28 +103462,29 @@ self: { broken = true; }) {}; - "ghc-boot_9_0_1" = callPackage - ({ mkDerivation, base, binary, bytestring, containers, directory - , filepath, ghc-boot-th + "ghc-boot_9_2_1" = callPackage + ({ mkDerivation, base, binary, bytestring, containers, deepseq + , directory, filepath, ghc-boot-th }: mkDerivation { pname = "ghc-boot"; - version = "9.0.1"; - sha256 = "1qrxb762dj8p1brfpyididhjnwjk34nr6cq4j80rkhaf7pki08ik"; + version = "9.2.1"; + sha256 = "1i1rr219jsfi23j6ynzx7r1r2si3q2pp89hld56c7wcvqcwa2b77"; libraryHaskellDepends = [ - base binary bytestring containers directory filepath ghc-boot-th + base binary bytestring containers deepseq directory filepath + ghc-boot-th ]; description = "Shared functionality between GHC and its boot libraries"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; }) {}; - "ghc-boot-th_9_0_1" = callPackage + "ghc-boot-th_9_2_1" = callPackage ({ mkDerivation, base }: mkDerivation { pname = "ghc-boot-th"; - version = "9.0.1"; - sha256 = "1y3kpfczcs507md56ijw943pwvia86fh83mr2c0bq28yhd0kw8gl"; + version = "9.2.1"; + sha256 = "1qv0lzaxlwxb2hswgjcryk9d7zk0163yd1fa2sgv4jd6ycn9yxh5"; libraryHaskellDepends = [ base ]; description = "Shared functionality between GHC and the @template-haskell@ library"; license = lib.licenses.bsd3; @@ -103693,8 +103497,8 @@ self: { pname = "ghc-byteorder"; version = "4.11.0.0.10"; sha256 = "1dhzd7ygwm7b3hsrlm48iq4p634laby4hf7c8i7xp0c1g64hmrc6"; - revision = "1"; - editedCabalFile = "1qwx6569079a8viq2plkpc1wlqdz8syys6hvx68m051a7zvdwzyl"; + revision = "2"; + editedCabalFile = "0lh3giqq47wf02glc96wsn6qxnll7d6x6xa78fzs32xjww6p4ig3"; libraryHaskellDepends = [ base ]; testHaskellDepends = [ base ]; doHaddock = false; @@ -103755,8 +103559,8 @@ self: { pname = "ghc-compact"; version = "0.1.0.0"; sha256 = "03sf8ap1ncjsibp9z7k9xgcsj9s0q3q6l4shf8k7p8dkwpjl1g2h"; - revision = "3"; - editedCabalFile = "09l51r0nk7vj6a9crz7q5sv4962mnq18xb6zkxfl6cnm28v85nsk"; + revision = "4"; + editedCabalFile = "02dinasxkbrysdhl8w1c1a1ldiqna49zfbl9hgbk4xlnph0xw5wr"; libraryHaskellDepends = [ base bytestring ghc-prim ]; description = "In memory storage of deeply evaluated data structure"; license = lib.licenses.bsd3; @@ -104137,13 +103941,13 @@ self: { broken = true; }) {}; - "ghc-heap_9_0_1" = callPackage - ({ mkDerivation, base, ghc-prim, rts }: + "ghc-heap_9_2_1" = callPackage + ({ mkDerivation, base, containers, ghc-prim, rts }: mkDerivation { pname = "ghc-heap"; - version = "9.0.1"; - sha256 = "01wz87jpd5b39lh9hymx8zd0r86insvk65lwhmdgj3yv4ldyrydn"; - libraryHaskellDepends = [ base ghc-prim rts ]; + version = "9.2.1"; + sha256 = "10d7p12p9v5z426rxx1cyhk90hx6ab6l98bk1v4a9gk551fcqsv9"; + libraryHaskellDepends = [ base containers ghc-prim rts ]; description = "Functions for walking GHC's heap"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; @@ -104295,6 +104099,28 @@ self: { hydraPlatforms = lib.platforms.none; }) {}; + "ghc-lib_9_2_1_20211101" = callPackage + ({ mkDerivation, alex, array, base, binary, bytestring, containers + , deepseq, directory, exceptions, filepath, ghc-lib-parser + , ghc-prim, happy, hpc, parsec, pretty, process, rts, time + , transformers, unix + }: + mkDerivation { + pname = "ghc-lib"; + version = "9.2.1.20211101"; + sha256 = "10rzvj7m6m664szxjaf3mk1v42lb4imwkrvpqn26x7p3jd7ywph0"; + enableSeparateDataOutput = true; + libraryHaskellDepends = [ + array base binary bytestring containers deepseq directory + exceptions filepath ghc-lib-parser ghc-prim hpc parsec pretty + process rts time transformers unix + ]; + libraryToolDepends = [ alex happy ]; + description = "The GHC API, decoupled from GHC versions"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "ghc-lib-parser" = callPackage ({ mkDerivation, alex, array, base, binary, bytestring, containers , deepseq, directory, filepath, ghc-prim, happy, pretty, process @@ -104335,6 +104161,27 @@ self: { hydraPlatforms = lib.platforms.none; }) {}; + "ghc-lib-parser_9_2_1_20211101" = callPackage + ({ mkDerivation, alex, array, base, binary, bytestring, containers + , deepseq, directory, exceptions, filepath, ghc-prim, happy, parsec + , pretty, process, time, transformers, unix + }: + mkDerivation { + pname = "ghc-lib-parser"; + version = "9.2.1.20211101"; + sha256 = "0dxhpczlpppdsmn1cnz2minpkvlz27njzv7xcbqgfgl0bvp5wx0n"; + enableSeparateDataOutput = true; + libraryHaskellDepends = [ + array base binary bytestring containers deepseq directory + exceptions filepath ghc-prim parsec pretty process time + transformers unix + ]; + libraryToolDepends = [ alex happy ]; + description = "The GHC API, decoupled from GHC versions"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "ghc-lib-parser-ex" = callPackage ({ mkDerivation, base, bytestring, containers, directory, extra , filepath, ghc, ghc-boot, ghc-boot-th, tasty, tasty-hunit @@ -104375,6 +104222,26 @@ self: { hydraPlatforms = lib.platforms.none; }) {}; + "ghc-lib-parser-ex_9_2_0_1" = callPackage + ({ mkDerivation, base, bytestring, containers, directory, extra + , filepath, ghc-lib-parser, tasty, tasty-hunit, uniplate + }: + mkDerivation { + pname = "ghc-lib-parser-ex"; + version = "9.2.0.1"; + sha256 = "0jpxqvvryf6s5rwghb23lhhslg9d5wg3cba0iz6kg9b2q5zb1skk"; + libraryHaskellDepends = [ + base bytestring containers ghc-lib-parser uniplate + ]; + testHaskellDepends = [ + base directory extra filepath ghc-lib-parser tasty tasty-hunit + uniplate + ]; + description = "Algorithms on GHC parse trees"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "ghc-make" = callPackage ({ mkDerivation, base, process, shake, unordered-containers }: mkDerivation { @@ -104535,8 +104402,8 @@ self: { pname = "ghc-paths"; version = "0.1.0.12"; sha256 = "1164w9pqnf7rjm05mmfjznz7rrn415blrkk1kjc0gjvks1vfdjvf"; - revision = "2"; - editedCabalFile = "07f81larq1ddxq2m2vyq05sdhfmz0whf2c3i5cdq57pkhijxppxg"; + revision = "3"; + editedCabalFile = "109aygfsji4s9sdy1jyh0p5gy2hhcxp3x07fb88f72kfbn6896av"; setupHaskellDepends = [ base Cabal directory ]; libraryHaskellDepends = [ base ]; description = "Knowledge of GHC's installation directories"; @@ -104595,12 +104462,12 @@ self: { broken = true; }) {}; - "ghc-prim_0_7_0" = callPackage + "ghc-prim_0_8_0" = callPackage ({ mkDerivation, base, c, Cabal, rts }: mkDerivation { pname = "ghc-prim"; - version = "0.7.0"; - sha256 = "189mr2v8b338lzdhr0r1p4wqz4gm47gqw93fziawwvlj4g6k8mw9"; + version = "0.8.0"; + sha256 = "1nryf4smajnqxw29s5hbzmv7psjl6qrcvkk12zzh7x3nkf4qr8ss"; setupHaskellDepends = [ base Cabal ]; libraryHaskellDepends = [ rts ]; librarySystemDepends = [ c ]; @@ -105668,36 +105535,38 @@ self: { , case-insensitive, casing, containers, cryptohash-sha256, deepseq , directory, disk-free-space, filepath, generic-arbitrary , haskus-utils-types, haskus-utils-variant, hspec, hspec-discover - , hspec-golden-aeson, HsYAML-aeson, libarchive, lzma-static - , megaparsec, mtl, optics, optparse-applicative, os-release, pretty - , pretty-terminal, QuickCheck, quickcheck-arbitrary-adt - , regex-posix, resourcet, safe, safe-exceptions, split, strict-base + , hspec-golden-aeson, libarchive, lzma-static, megaparsec, mtl + , optics, optparse-applicative, os-release, pretty, pretty-terminal + , QuickCheck, quickcheck-arbitrary-adt, regex-posix, resourcet + , retry, safe, safe-exceptions, split, strict-base , template-haskell, temporary, text, time, transformers, unix , unix-bytestring, unliftio-core, unordered-containers - , uri-bytestring, utf8-string, vector, versions, word8, zlib + , uri-bytestring, utf8-string, vector, versions, word8 + , yaml-streamly, zlib }: mkDerivation { pname = "ghcup"; - version = "0.1.17.2"; - sha256 = "0ggajcaxbr71npn6ihmlw954aj8lmdlwq3k22n9cnf23gg8s0yfv"; + version = "0.1.17.3"; + sha256 = "0m2h3grx8w6zn2qz6wpp8kqjrd30h1i7bpy4h3x9sxmi8x11k84i"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ aeson async base base16-bytestring binary bytestring bz2 Cabal case-insensitive casing containers cryptohash-sha256 deepseq directory disk-free-space filepath haskus-utils-types - haskus-utils-variant HsYAML-aeson libarchive lzma-static megaparsec - mtl optics os-release pretty pretty-terminal regex-posix resourcet - safe safe-exceptions split strict-base template-haskell temporary - text time transformers unix unix-bytestring unliftio-core - unordered-containers uri-bytestring vector versions word8 zlib + haskus-utils-variant libarchive lzma-static megaparsec mtl optics + os-release pretty pretty-terminal regex-posix resourcet retry safe + safe-exceptions split strict-base template-haskell temporary text + time transformers unix unix-bytestring unliftio-core + unordered-containers uri-bytestring vector versions word8 + yaml-streamly zlib ]; executableHaskellDepends = [ aeson aeson-pretty async base bytestring cabal-plan containers - deepseq filepath haskus-utils-variant HsYAML-aeson libarchive - megaparsec mtl optics optparse-applicative pretty pretty-terminal - regex-posix resourcet safe safe-exceptions template-haskell text - transformers uri-bytestring utf8-string versions + deepseq filepath haskus-utils-variant libarchive megaparsec mtl + optics optparse-applicative pretty pretty-terminal regex-posix + resourcet safe safe-exceptions template-haskell text transformers + uri-bytestring utf8-string versions yaml-streamly ]; testHaskellDepends = [ base bytestring containers generic-arbitrary hspec @@ -106593,6 +106462,9 @@ self: { libraryPkgconfigDepends = [ webkitgtk ]; description = "JavaScriptCore bindings"; license = lib.licenses.lgpl21Only; + platforms = [ + "aarch64-linux" "armv7l-linux" "i686-linux" "x86_64-linux" + ]; }) {inherit (pkgs) webkitgtk;}; "gi-notify" = callPackage @@ -106847,6 +106719,9 @@ self: { libraryPkgconfigDepends = [ webkitgtk ]; description = "WebKit2 bindings"; license = lib.licenses.lgpl21Only; + platforms = [ + "aarch64-linux" "armv7l-linux" "i686-linux" "x86_64-linux" + ]; }) {inherit (pkgs) webkitgtk;}; "gi-webkit2webextension" = callPackage @@ -106871,6 +106746,9 @@ self: { libraryPkgconfigDepends = [ webkitgtk ]; description = "WebKit2-WebExtension bindings"; license = lib.licenses.lgpl21Only; + platforms = [ + "aarch64-linux" "armv7l-linux" "i686-linux" "x86_64-linux" + ]; }) {inherit (pkgs) webkitgtk;}; "gi-wnck" = callPackage @@ -106995,7 +106873,7 @@ self: { license = lib.licenses.mit; }) {}; - "ginger_0_10_2_0" = callPackage + "ginger_0_10_4_0" = callPackage ({ mkDerivation, aeson, aeson-pretty, base, bytestring, containers , data-default, filepath, http-types, mtl, optparse-applicative , parsec, process, regex-tdfa, safe, scientific, tasty, tasty-hunit @@ -107004,8 +106882,8 @@ self: { }: mkDerivation { pname = "ginger"; - version = "0.10.2.0"; - sha256 = "0mqwcd4l8h6gk2i1qgj99zlp0c46kvkzni14vl2k6m3iili12ir7"; + version = "0.10.4.0"; + sha256 = "1bl2cmr8sp9vnsvqq5wa0c56yljrhj3s09k2j5gyhp5xsskxa0gp"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -107232,8 +107110,8 @@ self: { }: mkDerivation { pname = "git-annex"; - version = "8.20211011"; - sha256 = "02s7921ihmbndp7lk1nhhiljky02ikq4qax4mhg609qjhbl6piwd"; + version = "8.20211028"; + sha256 = "0bff1bchp60hbslb9yaagvd7hym26w0c3gkkssm7sildwqazwpng"; configureFlags = [ "-fassistant" "-f-benchmark" "-fdbus" "-f-debuglocks" "-fmagicmime" "-fnetworkbsd" "-fpairing" "-fproduction" "-fs3" "-ftorrentparser" @@ -107491,8 +107369,8 @@ self: { }: mkDerivation { pname = "git-lfs"; - version = "1.1.1"; - sha256 = "1jjr73knvc8b7mlabb3yyyc5blfxiwgbdk6lylshfp2fqsmkvhnx"; + version = "1.1.2"; + sha256 = "1kfrlpq54s5z84l5sk19vmvlqrybnyqg2nwgh452bdh13z67scmw"; libraryHaskellDepends = [ aeson base bytestring case-insensitive containers http-client http-types network-uri text @@ -107855,26 +107733,6 @@ self: { }) {}; "github-release" = callPackage - ({ mkDerivation, aeson, base, burrito, bytestring, http-client - , http-client-tls, http-types, mime-types, optparse-generic, text - , unordered-containers - }: - mkDerivation { - pname = "github-release"; - version = "1.3.7"; - sha256 = "14dz9ap43m2ws6l4wfrn6wn3g5p2k0fgv639q7nyp4zdd4kn9czh"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - aeson base burrito bytestring http-client http-client-tls - http-types mime-types optparse-generic text unordered-containers - ]; - executableHaskellDepends = [ base ]; - description = "Upload files to GitHub releases"; - license = lib.licenses.mit; - }) {}; - - "github-release_1_3_8" = callPackage ({ mkDerivation, aeson, base, burrito, bytestring, http-client , http-client-tls, http-types, mime-types, optparse-generic, text , unordered-containers @@ -107892,7 +107750,6 @@ self: { executableHaskellDepends = [ base ]; description = "Upload files to GitHub releases"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "github-rest" = callPackage @@ -108522,8 +108379,8 @@ self: { }: mkDerivation { pname = "glabrous"; - version = "2.0.4"; - sha256 = "0rzfs09njlll144l05s77hs9pm9mmnb8h705xlyr5yavllkv1ypk"; + version = "2.0.5"; + sha256 = "1yxyyjjhfi30ymd0v80xrn4m81m2hs3v5slbdd2hc856k91lmghg"; libraryHaskellDepends = [ aeson aeson-pretty attoparsec base bytestring cereal cereal-text either text unordered-containers @@ -109834,6 +109691,26 @@ self: { broken = true; }) {}; + "godot-megaparsec" = callPackage + ({ mkDerivation, base, criterion, lens, megaparsec, text + , unordered-containers + }: + mkDerivation { + pname = "godot-megaparsec"; + version = "0.2.2.0"; + sha256 = "0rlbvvanf8y9drnr8f5fszylkchl70ddhlfcib9d03albvw1xllb"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base lens megaparsec text unordered-containers + ]; + executableHaskellDepends = [ base criterion megaparsec text ]; + description = "Megaparsec parser for Godot `tscn` and `gdns` files"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; + }) {}; + "gofer-prelude" = callPackage ({ mkDerivation, base, ghc-prim }: mkDerivation { @@ -111960,6 +111837,8 @@ self: { pname = "goldplate"; version = "0.2.0"; sha256 = "1f2n981676ykrv08fgdj87mj5r4841a18ywvgpc2hgapsgwbgma1"; + revision = "1"; + editedCabalFile = "09lsr2pvdrlaik4icyd18yiwnm4p87831pl3bbljmdsdc4rbwkp0"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -112318,6 +112197,28 @@ self: { maintainers = with lib.maintainers; [ sternenseemann ]; }) {}; + "gopher-proxy_0_1_1_3" = callPackage + ({ mkDerivation, attoparsec, base, bytestring, directory, errors + , http-types, lucid, mime-types, network, optparse-applicative + , text, wai, warp + }: + mkDerivation { + pname = "gopher-proxy"; + version = "0.1.1.3"; + sha256 = "0pqsir7hpz2hfdczhvvnqh7rbckxkzj7fsdq6r27nm9ixf5kmwfb"; + isLibrary = false; + isExecutable = true; + enableSeparateDataOutput = true; + executableHaskellDepends = [ + attoparsec base bytestring directory errors http-types lucid + mime-types network optparse-applicative text wai warp + ]; + description = "proxy gopher over http"; + license = lib.licenses.gpl3Only; + hydraPlatforms = lib.platforms.none; + maintainers = with lib.maintainers; [ sternenseemann ]; + }) {}; + "gopherbot" = callPackage ({ mkDerivation, base, HDBC, HDBC-postgresql, MissingH, network , parsec, unix @@ -112347,12 +112248,13 @@ self: { }: mkDerivation { pname = "gopro-plus"; - version = "0.5.0.0"; - sha256 = "1bykxdqhynyq3xg09f4vv39lypprg0285pi7wpsbjmi5vg8w17pd"; + version = "0.6.0.0"; + sha256 = "1gr59pxai34zhgf65vg20nrgwish3w9z6107qygnrpmfpi2axmq5"; libraryHaskellDepends = [ aeson base bytestring containers exceptions filepath - generic-deriving lens lens-aeson mtl random retry text time - transformers unix unliftio unordered-containers vector wreq + generic-deriving generic-random lens lens-aeson mtl QuickCheck + quickcheck-instances random retry text time transformers unix + unliftio unordered-containers vector wreq ]; testHaskellDepends = [ aeson base bytestring containers exceptions filepath @@ -112579,8 +112481,8 @@ self: { }: mkDerivation { pname = "gothic"; - version = "0.1.6"; - sha256 = "0p1hc4gpgn0djvyksc9nyi4r4lqapk6x5vfv2x514szw8z11h44s"; + version = "0.1.7"; + sha256 = "042kfadc9gvbdrcbh8z6hfb97jy2nrgspl88ii1lwfxzfy26j1vd"; libraryHaskellDepends = [ aeson base binary bytestring connection exceptions hashable http-client http-client-tls http-conduit http-types lens lens-aeson @@ -113639,28 +113541,29 @@ self: { "graphula" = callPackage ({ mkDerivation, aeson, base, bytestring, containers, directory - , generics-eot, hspec, http-api-data, HUnit, markdown-unlit - , monad-logger, mtl, path-pieces, persistent, persistent-sqlite - , persistent-template, QuickCheck, random, resourcet, semigroups - , temporary, text, transformers, unliftio, unliftio-core, uuid + , generic-arbitrary, generics-eot, hspec, http-api-data, HUnit + , markdown-unlit, monad-logger, mtl, path-pieces, persistent + , persistent-sqlite, persistent-template, QuickCheck, random + , resourcet, semigroups, temporary, text, transformers, unliftio + , unliftio-core }: mkDerivation { pname = "graphula"; - version = "2.0.0.5"; - sha256 = "1ajpp5c3y93pl7i4b1bkfg8w6075xvbhdx6c4mj1cnz7mq6763a7"; + version = "2.0.1.0"; + sha256 = "0h9nckz4mz4xrzwpqs3dclrc7dnqxf5pn3x741bng7cmvcwzzhdd"; libraryHaskellDepends = [ base containers directory generics-eot HUnit mtl persistent QuickCheck random semigroups temporary text transformers unliftio unliftio-core ]; testHaskellDepends = [ - aeson base bytestring containers hspec http-api-data markdown-unlit - monad-logger path-pieces persistent persistent-sqlite - persistent-template QuickCheck resourcet text transformers - unliftio-core uuid + aeson base bytestring containers generic-arbitrary hspec + http-api-data markdown-unlit monad-logger path-pieces persistent + persistent-sqlite persistent-template QuickCheck resourcet text + transformers unliftio-core ]; testToolDepends = [ markdown-unlit ]; - description = "A declarative library for describing dependencies between data"; + description = "A simple interface for generating persistent data and linking its dependencies"; license = lib.licenses.mit; }) {}; @@ -115099,8 +115002,8 @@ self: { }: mkDerivation { pname = "gtk2hs-buildtools"; - version = "0.13.8.1"; - sha256 = "102x753jbc90lfm9s0ng5kvm0risqwpar331xwsd752as0bms142"; + version = "0.13.8.2"; + sha256 = "01zdjn50lj8aw0ild97m4g7k1jfscsxvabs2f6laxk6ql6jy5iag"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -117335,6 +117238,8 @@ self: { ]; description = "Dockerfile Linter JavaScript API"; license = lib.licenses.gpl3Only; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hadoop-formats" = callPackage @@ -117826,8 +117731,10 @@ self: { }: mkDerivation { pname = "hakyll"; - version = "4.15.0.1"; - sha256 = "09arikf44i4llffhi948fy2zdj76zym7z9swjx5p5axc7qvc4sqh"; + version = "4.15.1.0"; + sha256 = "18nhpnhi63xvmb14khw1ad8rwj2lxdyhpc58gnmr9vb5zz2db6bh"; + revision = "1"; + editedCabalFile = "1kxdvh7250nvfdz5wnchyqhghhp05i06sfnjg9ar17p0wyqzv46z"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -117842,8 +117749,9 @@ self: { ]; executableHaskellDepends = [ base directory filepath ]; testHaskellDepends = [ - base bytestring containers filepath QuickCheck tasty tasty-golden - tasty-hunit tasty-quickcheck text unordered-containers yaml + aeson base bytestring containers filepath QuickCheck tagsoup tasty + tasty-golden tasty-hunit tasty-quickcheck text unordered-containers + yaml ]; testToolDepends = [ util-linux ]; description = "A static website compiler library"; @@ -118038,6 +117946,8 @@ self: { pname = "hakyll-convert"; version = "0.3.0.4"; sha256 = "09fqr05mvs0qs53psq97kn1s4axinwn1vr5d6af4sqj3zc5k6k39"; + revision = "1"; + editedCabalFile = "0sg82zrawgklzkzpj8gpigwh1ixzi2igsxl8s881skq1z9k1fphj"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -119048,8 +118958,8 @@ self: { }: mkDerivation { pname = "hapistrano"; - version = "0.4.2.0"; - sha256 = "1f23a0n2pjhacqm275k8njkln3an2x0w48kjgxlrna39mf3fdkwh"; + version = "0.4.3.0"; + sha256 = "05aphcj0pfqiwg6xxagf9d81qv4qqs8rbk140i9d9xvhyis3fl73"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -119778,26 +119688,6 @@ self: { hydraPlatforms = lib.platforms.none; }) {}; - "happy_1_19_9" = callPackage - ({ mkDerivation, array, base, Cabal, containers, directory - , filepath, mtl, process - }: - mkDerivation { - pname = "happy"; - version = "1.19.9"; - sha256 = "138xpxdb7x62lpmgmb6b3v3vgdqqvqn4273jaap3mjmc2gla709y"; - revision = "3"; - editedCabalFile = "0kwlh964nyqvfbm02np8vpc28gbhsby0r65jhz1918rm0wip9izq"; - isLibrary = false; - isExecutable = true; - setupHaskellDepends = [ base Cabal directory filepath ]; - executableHaskellDepends = [ array base containers mtl ]; - testHaskellDepends = [ base process ]; - description = "Happy is a parser generator for Haskell"; - license = lib.licenses.bsd2; - hydraPlatforms = lib.platforms.none; - }) {}; - "happy_1_19_12" = callPackage ({ mkDerivation, array, base, containers, mtl, process }: mkDerivation { @@ -120528,17 +120418,19 @@ self: { license = lib.licenses.bsd3; }) {}; - "hashable_1_3_4_1" = callPackage - ({ mkDerivation, base, bytestring, containers, deepseq, ghc-prim - , HUnit, integer-gmp, QuickCheck, random, test-framework - , test-framework-hunit, test-framework-quickcheck2, text, unix + "hashable_1_4_0_0" = callPackage + ({ mkDerivation, base, base-orphans, bytestring, containers + , deepseq, ghc-prim, HUnit, integer-gmp, QuickCheck, random + , test-framework, test-framework-hunit, test-framework-quickcheck2 + , text, unix }: mkDerivation { pname = "hashable"; - version = "1.3.4.1"; - sha256 = "15iik80jdp3yn8azzc7kpjl0zwfc36v9m71cy018swal7bqgv99c"; + version = "1.4.0.0"; + sha256 = "0zg5fvr6561r6nzyqsirxcsyjc2rcr07snv2gl9vxp3dks44gbx1"; libraryHaskellDepends = [ - base bytestring containers deepseq ghc-prim integer-gmp text + base base-orphans bytestring containers deepseq ghc-prim + integer-gmp text ]; testHaskellDepends = [ base bytestring ghc-prim HUnit QuickCheck random test-framework @@ -120684,19 +120576,24 @@ self: { }) {}; "hashes" = callPackage - ({ mkDerivation, base, bytestring, criterion, memory, QuickCheck }: + ({ mkDerivation, base, bytestring, criterion, openssl, QuickCheck + , sydtest + }: mkDerivation { pname = "hashes"; - version = "0.1.0.1"; - sha256 = "0r686g8ksgl680s11m433z0d5b9hq8dz7k2as31qm2r2b6rvg7yd"; + version = "0.2.1.1"; + sha256 = "0ni2viazdsg7632lf5viclmwicas36y4ky3mm1bmy3rpvw48g8np"; libraryHaskellDepends = [ base bytestring ]; - testHaskellDepends = [ base bytestring QuickCheck ]; - benchmarkHaskellDepends = [ - base bytestring criterion memory QuickCheck - ]; + librarySystemDepends = [ openssl ]; + testHaskellDepends = [ base bytestring QuickCheck sydtest ]; + testSystemDepends = [ openssl ]; + benchmarkHaskellDepends = [ base bytestring criterion ]; + benchmarkSystemDepends = [ openssl ]; description = "Hash functions"; license = lib.licenses.mit; - }) {}; + hydraPlatforms = lib.platforms.none; + broken = true; + }) {inherit (pkgs) openssl;}; "hashflare" = callPackage ({ mkDerivation, base, containers, simple-money }: @@ -120839,8 +120736,8 @@ self: { }: mkDerivation { pname = "hashtables"; - version = "1.2.4.1"; - sha256 = "0vgggm7bqq55zmqj6qji89bfj3k1rdkikkfhyg81vsqf0f3bzhqa"; + version = "1.2.4.2"; + sha256 = "1z3h2h0wbiwzj9zs17bggynzgqa77gxcj8h4x28dq3sha81j5rx8"; libraryHaskellDepends = [ base ghc-prim hashable primitive vector ]; @@ -121921,8 +121818,8 @@ self: { pname = "haskell-lsp"; version = "0.24.0.0"; sha256 = "0gw289wy91h0qv4filw3glw3rrjvmr5j591wrdiwc1bl3w56bpig"; - revision = "1"; - editedCabalFile = "0px7k5768rnxfqi9cf2g2f99kh2kwmyy2vkzszcp2kgxhb7qzcha"; + revision = "2"; + editedCabalFile = "1zcm43g0pyba9vdlqj5whd3743zpfi8cy94p9gdh5fvcbb8wv5jn"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -122444,8 +122341,8 @@ self: { pname = "haskell-src"; version = "1.0.3.1"; sha256 = "0cjigvshk4b8wqdk0v0hz9ag1kyjjsmqsy4a1m3n28ac008cg746"; - revision = "4"; - editedCabalFile = "0cyqdw77clzz7mq0b4c0jg2d1kdz9xii41268w2psmqmfpyn29pc"; + revision = "5"; + editedCabalFile = "1qaibp1b1szb3ci5lhsxa3lh7iwyfzr5gjnmb4nypqwjqs05dk2c"; libraryHaskellDepends = [ array base pretty syb ]; libraryToolDepends = [ happy ]; description = "Support for manipulating Haskell source code"; @@ -124827,15 +124724,15 @@ self: { "haskus-utils-variant" = callPackage ({ mkDerivation, base, criterion, deepseq, doctest, exceptions - , haskus-utils-data, haskus-utils-types, QuickCheck, tasty + , haskus-utils-data, haskus-utils-types, mtl, QuickCheck, tasty , tasty-quickcheck, template-haskell, transformers }: mkDerivation { pname = "haskus-utils-variant"; - version = "3.1"; - sha256 = "0iqlc6lrgrwjqvgpbvvvna8v5daxgf84vnqlgbchy87p67lkv6ni"; + version = "3.2"; + sha256 = "0bhs2ybwbn9g1h879dd3pxs99rl40kvpsj1dn3lk3yk7h071bqbg"; libraryHaskellDepends = [ - base deepseq exceptions haskus-utils-data haskus-utils-types + base deepseq exceptions haskus-utils-data haskus-utils-types mtl template-haskell transformers ]; testHaskellDepends = [ @@ -124997,8 +124894,8 @@ self: { }: mkDerivation { pname = "hasql"; - version = "1.4.5.2"; - sha256 = "0kliby1gigmy1z856wnnlrn70hacqj2350yypdxkm7sfh717n4rj"; + version = "1.4.5.3"; + sha256 = "0r69h8qbbylj56jl8yl7gyp7bx3mf95wmy1ilpxzidfrjrr9pc0a"; libraryHaskellDepends = [ attoparsec base bytestring bytestring-strict-builder contravariant dlist hashable hashtables mtl postgresql-binary postgresql-libpq @@ -126327,6 +126224,9 @@ self: { executableHaskellDepends = [ base ]; description = "Minimal extensible web-browser"; license = "unknown"; + platforms = [ + "aarch64-linux" "armv7l-linux" "i686-linux" "x86_64-linux" + ]; }) {}; "hbro-contrib" = callPackage @@ -126359,6 +126259,9 @@ self: { ]; description = "Third-party extensions to hbro"; license = "unknown"; + platforms = [ + "aarch64-linux" "armv7l-linux" "i686-linux" "x86_64-linux" + ]; }) {}; "hburg" = callPackage @@ -134599,8 +134502,8 @@ self: { }: mkDerivation { pname = "hnix"; - version = "0.14.0.1"; - sha256 = "1d8rsbifx29560c3kj4l688snxb6sz391m1pkkcfdakizwjzz983"; + version = "0.14.0.5"; + sha256 = "1h2m9vrgss4mg25dyfwhb93h1c60nrkw122b7hnpiff5lm1jy89f"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -136272,10 +136175,8 @@ self: { }: mkDerivation { pname = "hostaddress"; - version = "0.1.0.0"; - sha256 = "0g2bh1iz7cc8l035z4l1937v4sw1s1j383fg87acdgzgswzvl666"; - revision = "1"; - editedCabalFile = "1mx35sn61p12qv0c6f7bjdm13m5983yi7qcm76cy8xybgx1cyl8k"; + version = "0.2.0.0"; + sha256 = "075l62s2ldzg5qnzgc2i8ycybavm9wg73sbdrassq6x6rc01pch1"; libraryHaskellDepends = [ attoparsec base bytestring case-insensitive deepseq exceptions hashable iproute microlens-th text @@ -136544,46 +136445,6 @@ self: { }) {}; "hpack" = callPackage - ({ mkDerivation, aeson, base, bifunctors, bytestring, Cabal - , containers, cryptonite, deepseq, directory, filepath, Glob, hspec - , hspec-discover, http-client, http-client-tls, http-types, HUnit - , infer-license, interpolate, mockery, pretty, QuickCheck - , scientific, template-haskell, temporary, text, transformers - , unordered-containers, vector, yaml - }: - mkDerivation { - pname = "hpack"; - version = "0.34.4"; - sha256 = "1xszy00al5zzga64gh7nvgqc93242f61kqy8lb09jkm98a8fs4bl"; - revision = "1"; - editedCabalFile = "0gq6ax8a7yc5lp0n24kd60kq0dgpgsgcgl970jrf1hqnzf53pspk"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - aeson base bifunctors bytestring Cabal containers cryptonite - deepseq directory filepath Glob http-client http-client-tls - http-types infer-license pretty scientific text transformers - unordered-containers vector yaml - ]; - executableHaskellDepends = [ - aeson base bifunctors bytestring Cabal containers cryptonite - deepseq directory filepath Glob http-client http-client-tls - http-types infer-license pretty scientific text transformers - unordered-containers vector yaml - ]; - testHaskellDepends = [ - aeson base bifunctors bytestring Cabal containers cryptonite - deepseq directory filepath Glob hspec http-client http-client-tls - http-types HUnit infer-license interpolate mockery pretty - QuickCheck scientific template-haskell temporary text transformers - unordered-containers vector yaml - ]; - testToolDepends = [ hspec-discover ]; - description = "A modern format for Haskell packages"; - license = lib.licenses.mit; - }) {}; - - "hpack_0_34_5" = callPackage ({ mkDerivation, aeson, base, bifunctors, bytestring, Cabal , containers, cryptonite, deepseq, directory, filepath, Glob, hspec , hspec-discover, http-client, http-client-tls, http-types, HUnit @@ -136619,7 +136480,6 @@ self: { testToolDepends = [ hspec-discover ]; description = "A modern format for Haskell packages"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "hpack-convert" = callPackage @@ -137178,8 +137038,8 @@ self: { }: mkDerivation { pname = "hpqtypes"; - version = "1.9.2.0"; - sha256 = "0agdii93xl6hn5a9szl2qazpjn2j6vwkcr2pg7jp5mdsswwkvd3l"; + version = "1.9.2.1"; + sha256 = "1d5k66ka43h45d1nmv3hd3wzcy00dmyh8mhjyi15l18yk6vwiw8v"; setupHaskellDepends = [ base Cabal directory filepath ]; libraryHaskellDepends = [ aeson async base bytestring containers exceptions lifted-base @@ -137210,8 +137070,8 @@ self: { pname = "hpqtypes-extras"; version = "1.12.0.1"; sha256 = "0qpydy2hg6fmwhwg0azgraxhjijfarns3syrv2an4ynfqcxrds9k"; - revision = "1"; - editedCabalFile = "1brrz8ddm0hw3c5w1mf1f8a14qk5c9wiav5a0l5fi6p1k86pfv4j"; + revision = "2"; + editedCabalFile = "0xbflhmnibji9sj1yhsm9xzy0rd9k9mhyw41ixlbdvz70jjmjykb"; libraryHaskellDepends = [ base base16-bytestring bytestring containers cryptohash exceptions extra fields-json hpqtypes lifted-base log-base monad-control mtl @@ -139091,6 +138951,28 @@ self: { license = lib.licenses.bsd3; }) {}; + "hsc2hs_0_68_8" = callPackage + ({ mkDerivation, base, containers, directory, filepath, HUnit + , process, test-framework, test-framework-hunit + }: + mkDerivation { + pname = "hsc2hs"; + version = "0.68.8"; + sha256 = "0lksyyfrvn3km8bmfjad0mr50mg20f9fwfqly83lma0pr7xiwd3q"; + isLibrary = false; + isExecutable = true; + enableSeparateDataOutput = true; + executableHaskellDepends = [ + base containers directory filepath process + ]; + testHaskellDepends = [ + base HUnit test-framework test-framework-hunit + ]; + description = "A preprocessor that helps with writing Haskell bindings to C code"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "hsc3" = callPackage ({ mkDerivation, array, base, binary, bytestring, containers , data-binary-ieee754, data-ordlist, directory, filepath, hosc, mtl @@ -140499,28 +140381,6 @@ self: { }) {}; "hslua" = callPackage - ({ mkDerivation, base, bytestring, containers, exceptions, lua5_3 - , mtl, QuickCheck, quickcheck-instances, tasty, tasty-hunit - , tasty-quickcheck, text - }: - mkDerivation { - pname = "hslua"; - version = "1.3.0.1"; - sha256 = "1mz8zk13dhgaf24hmmjqnn5hcln96iw73mcjwjilag8388wq72k7"; - configureFlags = [ "-fsystem-lua" "-f-use-pkgconfig" ]; - libraryHaskellDepends = [ - base bytestring containers exceptions mtl text - ]; - librarySystemDepends = [ lua5_3 ]; - testHaskellDepends = [ - base bytestring containers exceptions mtl QuickCheck - quickcheck-instances tasty tasty-hunit tasty-quickcheck text - ]; - description = "Bindings to Lua, an embeddable scripting language"; - license = lib.licenses.mit; - }) {inherit (pkgs) lua5_3;}; - - "hslua_1_3_0_2" = callPackage ({ mkDerivation, base, bytestring, containers, exceptions, lua5_3 , mtl, QuickCheck, quickcheck-instances, tasty, tasty-hunit , tasty-quickcheck, text @@ -140540,9 +140400,32 @@ self: { ]; description = "Bindings to Lua, an embeddable scripting language"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {inherit (pkgs) lua5_3;}; + "hslua_2_0_1" = callPackage + ({ mkDerivation, base, bytestring, containers, exceptions + , hslua-classes, hslua-core, hslua-marshalling + , hslua-objectorientation, hslua-packaging, mtl, tasty, tasty-hslua + , tasty-hunit, text + }: + mkDerivation { + pname = "hslua"; + version = "2.0.1"; + sha256 = "1qbxd2bsi7yybawjvisbkbqb6kl0jvlir53p37jq0ya1pqr5y9z0"; + libraryHaskellDepends = [ + base bytestring containers exceptions hslua-classes hslua-core + hslua-marshalling hslua-objectorientation hslua-packaging mtl text + ]; + testHaskellDepends = [ + base bytestring containers exceptions hslua-classes hslua-core + hslua-marshalling hslua-objectorientation hslua-packaging mtl tasty + tasty-hslua tasty-hunit text + ]; + description = "Bindings to Lua, an embeddable scripting language"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {}; + "hslua-aeson" = callPackage ({ mkDerivation, aeson, base, bytestring, hashable, hslua, hspec , HUnit, ieee754, QuickCheck, quickcheck-instances, scientific @@ -140564,6 +140447,29 @@ self: { license = lib.licenses.mit; }) {}; + "hslua-classes" = callPackage + ({ mkDerivation, base, bytestring, containers, exceptions + , hslua-core, hslua-marshalling, lua-arbitrary, QuickCheck + , quickcheck-instances, tasty, tasty-hslua, tasty-hunit + , tasty-quickcheck, text + }: + mkDerivation { + pname = "hslua-classes"; + version = "2.0.0"; + sha256 = "1vnck29395dc4rcyr082vxyf8pz5llz73rpvkl3sq8029pj9jwsl"; + libraryHaskellDepends = [ + base bytestring containers exceptions hslua-core hslua-marshalling + text + ]; + testHaskellDepends = [ + base bytestring containers exceptions hslua-core hslua-marshalling + lua-arbitrary QuickCheck quickcheck-instances tasty tasty-hslua + tasty-hunit tasty-quickcheck text + ]; + description = "Type classes for HsLua"; + license = lib.licenses.mit; + }) {}; + "hslua-core" = callPackage ({ mkDerivation, base, bytestring, exceptions, lua, lua-arbitrary , mtl, QuickCheck, quickcheck-instances, tasty, tasty-hunit @@ -140571,8 +140477,8 @@ self: { }: mkDerivation { pname = "hslua-core"; - version = "1.0.0"; - sha256 = "1dkm0w0cpdkakx2ka8csjpg2dlzv49xxij884g1kzwg2k85l4xyy"; + version = "2.0.0.2"; + sha256 = "0hbabk6q3lfkj82v11aicnq52bibn8xnapmws8g639fnbslp66id"; libraryHaskellDepends = [ base bytestring exceptions lua mtl text ]; @@ -140582,9 +140488,47 @@ self: { ]; description = "Bindings to Lua, an embeddable scripting language"; license = lib.licenses.mit; + }) {}; + + "hslua-examples" = callPackage + ({ mkDerivation, base, bytestring, hslua, hslua-marshalling, lua + , text + }: + mkDerivation { + pname = "hslua-examples"; + version = "2.0.0"; + sha256 = "12wkhs83yrragwfrgl7xdgzs4bgm3zawrkxkh16dxn619brh7n8z"; + isLibrary = false; + isExecutable = true; + executableHaskellDepends = [ + base bytestring hslua hslua-marshalling lua text + ]; + description = "Examples of how to combine Haskell and Lua"; + license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; broken = true; - }) {lua-arbitrary = null;}; + }) {}; + + "hslua-marshalling" = callPackage + ({ mkDerivation, base, bytestring, containers, hslua-core + , lua-arbitrary, mtl, QuickCheck, quickcheck-instances, tasty + , tasty-hslua, tasty-hunit, tasty-quickcheck, text + }: + mkDerivation { + pname = "hslua-marshalling"; + version = "2.0.1"; + sha256 = "1s64cpy220wnjb2s2y8v96jn3dqids7wny3hwmb35pjyffaykrwl"; + libraryHaskellDepends = [ + base bytestring containers hslua-core mtl text + ]; + testHaskellDepends = [ + base bytestring containers hslua-core lua-arbitrary mtl QuickCheck + quickcheck-instances tasty tasty-hslua tasty-hunit tasty-quickcheck + text + ]; + description = "Marshalling of values between Haskell and Lua"; + license = lib.licenses.mit; + }) {}; "hslua-module-doclayout" = callPackage ({ mkDerivation, base, doclayout, hslua, tasty, tasty-hunit @@ -140602,6 +140546,23 @@ self: { license = lib.licenses.mit; }) {}; + "hslua-module-doclayout_1_0_0" = callPackage + ({ mkDerivation, base, doclayout, hslua, tasty, tasty-hunit + , tasty-lua, text + }: + mkDerivation { + pname = "hslua-module-doclayout"; + version = "1.0.0"; + sha256 = "1lzyb23bg0rjxlhz7q08r30yaqbx0h74869l212bimzq2df3fvmq"; + libraryHaskellDepends = [ base doclayout hslua text ]; + testHaskellDepends = [ + base doclayout hslua tasty tasty-hunit tasty-lua + ]; + description = "Lua module wrapping Text.DocLayout."; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {}; + "hslua-module-path" = callPackage ({ mkDerivation, base, filepath, hslua, tasty, tasty-hunit , tasty-lua, text @@ -140618,6 +140579,26 @@ self: { license = lib.licenses.mit; }) {}; + "hslua-module-path_1_0_0" = callPackage + ({ mkDerivation, base, filepath, hslua, hslua-marshalling + , hslua-packaging, tasty, tasty-hunit, tasty-lua, text + }: + mkDerivation { + pname = "hslua-module-path"; + version = "1.0.0"; + sha256 = "1yhalkvz2pyhv6fw1a5sd1a4zcd3qarrcbhfk6z80wh1j23cabzg"; + libraryHaskellDepends = [ + base filepath hslua hslua-marshalling hslua-packaging text + ]; + testHaskellDepends = [ + base filepath hslua hslua-marshalling hslua-packaging tasty + tasty-hunit tasty-lua text + ]; + description = "Lua module to work with file paths"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {}; + "hslua-module-system" = callPackage ({ mkDerivation, base, containers, directory, exceptions, hslua , tasty, tasty-hunit, tasty-lua, temporary, text @@ -140636,6 +140617,27 @@ self: { license = lib.licenses.mit; }) {}; + "hslua-module-system_1_0_0" = callPackage + ({ mkDerivation, base, directory, exceptions, hslua-core + , hslua-marshalling, hslua-packaging, tasty, tasty-hunit, tasty-lua + , temporary, text + }: + mkDerivation { + pname = "hslua-module-system"; + version = "1.0.0"; + sha256 = "1qvc2200mi1pqckjhav3d488nc4bfh1qv4mgaqx35njda8an6l9q"; + libraryHaskellDepends = [ + base directory exceptions hslua-core hslua-marshalling + hslua-packaging temporary text + ]; + testHaskellDepends = [ + base hslua-core hslua-packaging tasty tasty-hunit tasty-lua text + ]; + description = "Lua module wrapper around Haskell's System module"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {}; + "hslua-module-text" = callPackage ({ mkDerivation, base, bytestring, hslua, tasty, tasty-hunit , tasty-lua, text @@ -140654,6 +140656,90 @@ self: { license = lib.licenses.mit; }) {}; + "hslua-module-text_1_0_0" = callPackage + ({ mkDerivation, base, hslua-core, hslua-marshalling + , hslua-packaging, tasty, tasty-hunit, tasty-lua, text + }: + mkDerivation { + pname = "hslua-module-text"; + version = "1.0.0"; + sha256 = "0ymmca9nmxhwghyrbs08g0d0k49zby5rrvqjzxz332yh2nvi2fg1"; + libraryHaskellDepends = [ + base hslua-core hslua-marshalling hslua-packaging text + ]; + testHaskellDepends = [ + base hslua-core hslua-packaging tasty tasty-hunit tasty-lua text + ]; + description = "Lua module for text"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {}; + + "hslua-module-version" = callPackage + ({ mkDerivation, base, filepath, hslua, hslua-marshalling + , hslua-packaging, tasty, tasty-hunit, tasty-lua, text + }: + mkDerivation { + pname = "hslua-module-version"; + version = "1.0.0"; + sha256 = "1kbk0iva5g4garpx0d5l1gr6zlcfi565mscqr602dr88as87nfyn"; + libraryHaskellDepends = [ + base filepath hslua hslua-marshalling hslua-packaging text + ]; + testHaskellDepends = [ + base filepath hslua hslua-marshalling hslua-packaging tasty + tasty-hunit tasty-lua text + ]; + description = "Lua module to work with version specifiers"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; + }) {}; + + "hslua-objectorientation" = callPackage + ({ mkDerivation, base, bytestring, containers, exceptions + , hslua-core, hslua-marshalling, lua-arbitrary, mtl, QuickCheck + , quickcheck-instances, tasty, tasty-hslua, tasty-hunit + , tasty-quickcheck, text + }: + mkDerivation { + pname = "hslua-objectorientation"; + version = "2.0.1"; + sha256 = "15bz27fkfqbmqrqd0vv8z4a0yjby0s8mrkijp9d54ji9f5cbjbwd"; + libraryHaskellDepends = [ + base bytestring containers exceptions hslua-core hslua-marshalling + mtl text + ]; + testHaskellDepends = [ + base bytestring containers exceptions hslua-core hslua-marshalling + lua-arbitrary mtl QuickCheck quickcheck-instances tasty tasty-hslua + tasty-hunit tasty-quickcheck text + ]; + description = "Object orientation tools for HsLua"; + license = lib.licenses.mit; + }) {}; + + "hslua-packaging" = callPackage + ({ mkDerivation, base, bytestring, containers, hslua-core + , hslua-marshalling, hslua-objectorientation, mtl, tasty + , tasty-hslua, tasty-hunit, text + }: + mkDerivation { + pname = "hslua-packaging"; + version = "2.0.0"; + sha256 = "0zb9cdbrsqs882r56vbxi9v6r34kqhacb4dwm85j5yhdmpdy0p7d"; + libraryHaskellDepends = [ + base containers hslua-core hslua-marshalling + hslua-objectorientation mtl text + ]; + testHaskellDepends = [ + base bytestring hslua-core hslua-marshalling + hslua-objectorientation mtl tasty tasty-hslua tasty-hunit text + ]; + description = "Utilities to build Lua modules"; + license = lib.licenses.mit; + }) {}; + "hsluv-haskell" = callPackage ({ mkDerivation, aeson, base, bytestring, colour, containers }: mkDerivation { @@ -141946,13 +142032,14 @@ self: { }) {}; "hspecVariant" = callPackage - ({ mkDerivation, base, hspec, QuickCheckVariant }: + ({ mkDerivation, base, hspec, QuickCheck, QuickCheckVariant }: mkDerivation { pname = "hspecVariant"; - version = "1.0.0.0"; - sha256 = "0y45jizkf2kfj3yjjkq96kavkfp74vf5dyyjvi9pj3kshf8sx8il"; + version = "1.0.1.0"; + sha256 = "1s11faqvqdmizhwhd14lq0q169352hb0fc009sqvv4c4n563xgnh"; libraryHaskellDepends = [ base hspec QuickCheckVariant ]; - description = "Spec for testing properties for variant types"; + testHaskellDepends = [ base hspec QuickCheck QuickCheckVariant ]; + description = "Spec for testing properties"; license = lib.licenses.gpl3Only; hydraPlatforms = lib.platforms.none; }) {}; @@ -143373,6 +143460,8 @@ self: { pname = "htoml"; version = "1.0.0.3"; sha256 = "0vw59kmwwqcr6ja9rx2q5l7s78n384cl7fdbq1azp03g6a5diy08"; + revision = "1"; + editedCabalFile = "1aci42zkrsbnxh090aah3j2c094gqkb0yh7i2prvlkhfsfi8r70b"; libraryHaskellDepends = [ aeson base containers old-locale parsec text time unordered-containers vector @@ -144200,30 +144289,6 @@ self: { }) {}; "http-link-header" = callPackage - ({ mkDerivation, attoparsec, base, bytestring, criterion, directory - , errors, hspec, hspec-attoparsec, http-api-data, network-uri - , QuickCheck, text, transformers - }: - mkDerivation { - pname = "http-link-header"; - version = "1.2.0"; - sha256 = "1y0vr8fi8pap7ixbafp2lxvdk9hh56h370jw7qd11gm2032nnvg9"; - libraryHaskellDepends = [ - attoparsec base bytestring errors http-api-data network-uri text - ]; - testHaskellDepends = [ - attoparsec base bytestring errors hspec hspec-attoparsec - http-api-data network-uri QuickCheck text - ]; - benchmarkHaskellDepends = [ - attoparsec base bytestring criterion directory errors http-api-data - network-uri text transformers - ]; - description = "A parser and writer for the HTTP Link header per RFC 5988"; - license = lib.licenses.publicDomain; - }) {}; - - "http-link-header_1_2_1" = callPackage ({ mkDerivation, attoparsec, base, bytestring, criterion, directory , errors, hspec, hspec-attoparsec, http-api-data, network-uri , QuickCheck, text, transformers @@ -144245,7 +144310,6 @@ self: { ]; description = "A parser and writer for the HTTP Link header per RFC 5988"; license = lib.licenses.publicDomain; - hydraPlatforms = lib.platforms.none; }) {}; "http-listen" = callPackage @@ -146586,8 +146650,6 @@ self: { benchmarkHaskellDepends = [ base criterion vector ]; description = "Primitive support for bit manipulation"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hw-rankselect" = callPackage @@ -148585,6 +148647,7 @@ self: { description = "Shared library used be ide-backend and ide-backend-server"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "ide-backend-rts" = callPackage @@ -148858,8 +148921,8 @@ self: { }: mkDerivation { pname = "idris"; - version = "1.3.3"; - sha256 = "1pachwc6msw3n1mz2z1r1w6h518w9gbhdvbaa5vi1qp3cn3wm6q4"; + version = "1.3.4"; + sha256 = "0f5wrnc5ibpf2pmcj78lvg7cfq4n97ninm62wwx8993kwd6dvm46"; configureFlags = [ "-fcurses" "-fexeconly" "-fffi" "-fgmp" ]; isLibrary = true; isExecutable = true; @@ -150337,8 +150400,8 @@ self: { ({ mkDerivation, base, template-haskell }: mkDerivation { pname = "include-env"; - version = "0.3.0.0"; - sha256 = "00wgyka74w6i4w2k673cahp2nmsvhgdfdc3dp5nqb1hgks51n5lc"; + version = "0.4.0.0"; + sha256 = "0swq7fzij24wmqid0zb7hz6v4q8nm3qvd741wd183lidrkisgpf0"; libraryHaskellDepends = [ base template-haskell ]; description = "Include the value of an environment variable at compile time"; license = lib.licenses.bsd3; @@ -150705,10 +150768,8 @@ self: { ({ mkDerivation, array, base, containers, transformers }: mkDerivation { pname = "indexed-traversable"; - version = "0.1.1"; - sha256 = "0fc18vdm1894yjbjkj9wjm27bf37ac3gvkzak677mgiw2pinmhvs"; - revision = "1"; - editedCabalFile = "0krvp9v5dh4w2076kar48cpkk62ndqp769v2ai3b38rsa5bj6q74"; + version = "0.1.2"; + sha256 = "13b91rkhs6wcshaz3dwx6x3xjpw5z5bm2riwp78zxccqf7p5hs2i"; libraryHaskellDepends = [ array base containers transformers ]; description = "FunctorWithIndex, FoldableWithIndex, TraversableWithIndex"; license = lib.licenses.bsd2; @@ -150738,6 +150799,33 @@ self: { license = lib.licenses.bsd2; }) {}; + "indexed-traversable-instances_0_1_1" = callPackage + ({ mkDerivation, base, containers, criterion, indexed-traversable + , OneTuple, QuickCheck, quickcheck-instances, tagged, tasty + , tasty-quickcheck, transformers, unordered-containers, vector + }: + mkDerivation { + pname = "indexed-traversable-instances"; + version = "0.1.1"; + sha256 = "0i4s8fbqbgvkd2na48zwhlrcjpwxkx5rdh6f9fq2h4sl7c1d23hh"; + libraryHaskellDepends = [ + base indexed-traversable OneTuple tagged unordered-containers + vector + ]; + testHaskellDepends = [ + base containers indexed-traversable OneTuple QuickCheck + quickcheck-instances tasty tasty-quickcheck transformers + unordered-containers vector + ]; + benchmarkHaskellDepends = [ + base containers criterion indexed-traversable unordered-containers + vector + ]; + description = "More instances of FunctorWithIndex, FoldableWithIndex, TraversableWithIndex"; + license = lib.licenses.bsd2; + hydraPlatforms = lib.platforms.none; + }) {}; + "indextype" = callPackage ({ mkDerivation, base, hspec }: mkDerivation { @@ -151018,8 +151106,8 @@ self: { }: mkDerivation { pname = "influxdb"; - version = "1.9.2"; - sha256 = "1dmj2gg47wav9qk22a9p4pclxmxnw3czyfj19nbb09911vq1ng5n"; + version = "1.9.2.1"; + sha256 = "1w47wfzrl6bqac251qfpq7mja9n08kf9cgp76mmyfq3yfzcxn1wl"; isLibrary = true; isExecutable = true; setupHaskellDepends = [ base Cabal cabal-doctest ]; @@ -151375,8 +151463,8 @@ self: { }: mkDerivation { pname = "input-parsers"; - version = "0.2.3"; - sha256 = "1ck2y3bl60bgzqg43kfcff1y84qygmanay1x8cjlxam60mip1w7v"; + version = "0.2.3.1"; + sha256 = "0q928kmvhn3rahskjy60wywnzd5v5k2jlfc6fqkm4lzf0l8mnr05"; libraryHaskellDepends = [ attoparsec base binary bytestring monoid-subclasses parsec parsers text transformers @@ -151506,8 +151594,8 @@ self: { }: mkDerivation { pname = "instana-haskell-trace-sdk"; - version = "0.7.0.0"; - sha256 = "0y76rmz8m2fqw00hzyzalqrhv2rzkg2vvx7qaph3mfrq23ynrgaf"; + version = "0.7.1.0"; + sha256 = "1f03d6l77vldkpnclq1k7x9aqmdf651w01d1wg14bplpszvjma3x"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -151801,6 +151889,8 @@ self: { pname = "integer-logarithms"; version = "1.0.3.1"; sha256 = "0zzapclfabc76g8jzsbsqwdllx2zn0gp4raq076ib6v0mfgry2lv"; + revision = "2"; + editedCabalFile = "1nciavqjkv0yqh7xy20666srm92ip520bnhnhwkwaaabdzn12pmn"; libraryHaskellDepends = [ array base ghc-prim integer-gmp ]; testHaskellDepends = [ base QuickCheck smallcheck tasty tasty-hunit tasty-quickcheck @@ -152569,8 +152659,8 @@ self: { }: mkDerivation { pname = "invariant"; - version = "0.5.4"; - sha256 = "1jlp0gbfjsx7k08275djh8m3v4rpg8llw5gdkg9s9qfx0lc0mymr"; + version = "0.5.5"; + sha256 = "1xf7w9jadv496g8jdnmnqkbjw2gvc6n7cwszjd62rxiih3zhl596"; libraryHaskellDepends = [ array base bifunctors comonad containers contravariant ghc-prim profunctors StateVar stm tagged template-haskell th-abstraction @@ -152649,23 +152739,6 @@ self: { }) {}; "invertible-grammar" = callPackage - ({ mkDerivation, base, bifunctors, containers, mtl, prettyprinter - , profunctors, semigroups, tagged, template-haskell, text - , transformers - }: - mkDerivation { - pname = "invertible-grammar"; - version = "0.1.3.1"; - sha256 = "0ibbf8nq81b533902wkh0ags4a1jydm5jq0gn6jp1pg465q6qn7j"; - libraryHaskellDepends = [ - base bifunctors containers mtl prettyprinter profunctors semigroups - tagged template-haskell text transformers - ]; - description = "Invertible parsing combinators framework"; - license = lib.licenses.bsd3; - }) {}; - - "invertible-grammar_0_1_3_2" = callPackage ({ mkDerivation, base, bifunctors, containers, mtl, prettyprinter , profunctors, semigroups, tagged, template-haskell, text , transformers @@ -152680,7 +152753,6 @@ self: { ]; description = "Invertible parsing combinators framework"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "invertible-hlist" = callPackage @@ -153305,6 +153377,26 @@ self: { license = lib.licenses.bsd3; }) {}; + "iproute_1_7_12" = callPackage + ({ mkDerivation, appar, base, byteorder, bytestring, containers + , doctest, hspec, network, QuickCheck, safe + }: + mkDerivation { + pname = "iproute"; + version = "1.7.12"; + sha256 = "0qvb4d7nw8f6j4s09cnpn6z1rdwcwknwklfrhsgivg7wg4aisxgi"; + libraryHaskellDepends = [ + appar base byteorder bytestring containers network + ]; + testHaskellDepends = [ + appar base byteorder bytestring containers doctest hspec network + QuickCheck safe + ]; + description = "IP Routing Table"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "iptables-helpers" = callPackage ({ mkDerivation, base, containers, mtl, parsec, QuickCheck, safe , syb, utf8-string @@ -153351,23 +153443,21 @@ self: { }) {}; "ipynb" = callPackage - ({ mkDerivation, aeson, aeson-diff, base, base64-bytestring - , bytestring, containers, directory, filepath, microlens - , microlens-aeson, tasty, tasty-hunit, text, unordered-containers - , vector + ({ mkDerivation, aeson, base, base64-bytestring, bytestring + , containers, directory, filepath, microlens, microlens-aeson + , tasty, tasty-hunit, text, unordered-containers }: mkDerivation { pname = "ipynb"; - version = "0.1.0.1"; - sha256 = "0lwpz0ip7r1rxkirqb6p48ql19fzamqkrnf3khx7bfl5wsxi6yrb"; + version = "0.1.0.2"; + sha256 = "0qky4l5aaiq7ypwbxh0mr7s572290fi596f18dg68qpyzc49a9kx"; libraryHaskellDepends = [ aeson base base64-bytestring bytestring containers text unordered-containers ]; testHaskellDepends = [ - aeson aeson-diff base base64-bytestring bytestring directory - filepath microlens microlens-aeson tasty tasty-hunit text - unordered-containers vector + aeson base bytestring directory filepath microlens microlens-aeson + tasty tasty-hunit text ]; description = "Data structure for working with Jupyter notebooks (ipynb)"; license = lib.licenses.bsd3; @@ -154854,8 +154944,8 @@ self: { }: mkDerivation { pname = "j"; - version = "0.2.2.0"; - sha256 = "1lmk6zw5w51d6aglykiyp9qpa656qs9imf99nalzn7qldsz81aqd"; + version = "0.3.0.0"; + sha256 = "15vzhvb0vhahyl0wxcqqf19si6r00y6l6nirmimjriznbzqccjz9"; libraryHaskellDepends = [ base bytestring repa unix vector ]; testHaskellDepends = [ base bytestring repa tasty tasty-hunit ]; description = "J in Haskell"; @@ -155835,6 +155925,53 @@ self: { license = lib.licenses.bsd3; }) {}; + "jordan" = callPackage + ({ mkDerivation, attoparsec, base, bytestring, containers + , contravariant, hspec, hspec-megaparsec, megaparsec + , parser-combinators, QuickCheck, quickcheck-text, raw-strings-qq + , scientific, text + }: + mkDerivation { + pname = "jordan"; + version = "0.1.0.0"; + sha256 = "1qi83jc05ggakf0v7l7xf8c4xdfb29fb9yl54fi7wv9a4sqzk3hi"; + libraryHaskellDepends = [ + attoparsec base bytestring containers contravariant megaparsec + parser-combinators scientific text + ]; + testHaskellDepends = [ + attoparsec base bytestring containers contravariant hspec + hspec-megaparsec megaparsec parser-combinators QuickCheck + quickcheck-text raw-strings-qq scientific text + ]; + description = "JSON with Structure"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; + }) {}; + + "jordan-openapi" = callPackage + ({ mkDerivation, aeson, base, bytestring, containers, contravariant + , hspec, insert-ordered-containers, jordan, openapi3, optics-core + , text + }: + mkDerivation { + pname = "jordan-openapi"; + version = "0.1.0.0"; + sha256 = "0a9m1kx4v6vdzyd93lpc9jvqkhb9sw6adhyv2rvp1v0x7vbcqr0v"; + libraryHaskellDepends = [ + aeson base bytestring containers contravariant + insert-ordered-containers jordan openapi3 optics-core text + ]; + testHaskellDepends = [ + aeson base bytestring containers contravariant hspec + insert-ordered-containers jordan openapi3 optics-core text + ]; + description = "OpenAPI Definitions for Jordan, Automatically"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {}; + "jort" = callPackage ({ mkDerivation, array, base, gtk }: mkDerivation { @@ -155880,33 +156017,30 @@ self: { license = lib.licenses.asl20; }) {}; - "jose_0_8_5" = callPackage - ({ mkDerivation, aeson, attoparsec, base, base64-bytestring - , bytestring, concise, containers, cryptonite, hspec, lens, memory - , monad-time, mtl, network-uri, pem, QuickCheck - , quickcheck-instances, safe, tasty, tasty-hspec, tasty-quickcheck - , template-haskell, text, time, unordered-containers, vector, x509 + "jose_0_9" = callPackage + ({ mkDerivation, aeson, base, base64-bytestring, bytestring + , concise, containers, cryptonite, hspec, lens, memory, monad-time + , mtl, network-uri, pem, QuickCheck, quickcheck-instances, tasty + , tasty-hspec, tasty-quickcheck, template-haskell, text, time, x509 }: mkDerivation { pname = "jose"; - version = "0.8.5"; - sha256 = "0d3dgm12bjdmb806599amrxqkq1rz9bs5rkp8smllvrqyxc1qn9h"; + version = "0.9"; + sha256 = "0kii03gr6n8ayp1q3hid5qslzwgxm6isjnw8klvg7j82kliikycj"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - aeson attoparsec base base64-bytestring bytestring concise - containers cryptonite lens memory monad-time mtl network-uri - QuickCheck quickcheck-instances safe template-haskell text time - unordered-containers vector x509 + aeson base base64-bytestring bytestring concise containers + cryptonite lens memory monad-time mtl network-uri QuickCheck + quickcheck-instances template-haskell text time x509 ]; testHaskellDepends = [ - aeson attoparsec base base64-bytestring bytestring concise - containers cryptonite hspec lens memory monad-time mtl network-uri - pem QuickCheck quickcheck-instances safe tasty tasty-hspec - tasty-quickcheck template-haskell text time unordered-containers - vector x509 + aeson base base64-bytestring bytestring concise containers + cryptonite hspec lens mtl network-uri pem QuickCheck + quickcheck-instances tasty tasty-hspec tasty-quickcheck text time + x509 ]; - description = "Javascript Object Signing and Encryption and JSON Web Token library"; + description = "JSON Object Signing and Encryption (JOSE) and JSON Web Token (JWT) library"; license = lib.licenses.asl20; hydraPlatforms = lib.platforms.none; }) {}; @@ -156537,22 +156671,6 @@ self: { }) {}; "json-feed" = callPackage - ({ mkDerivation, aeson, base, bytestring, filepath, hspec - , mime-types, network-uri, tagsoup, text, time - }: - mkDerivation { - pname = "json-feed"; - version = "1.0.13"; - sha256 = "14wqv8qk7xax6kvj96wsx2sarxardbkddm8hkllkkf8b9jz04si5"; - libraryHaskellDepends = [ - aeson base bytestring mime-types network-uri tagsoup text time - ]; - testHaskellDepends = [ base bytestring filepath hspec ]; - description = "JSON Feed"; - license = lib.licenses.mit; - }) {}; - - "json-feed_1_0_14" = callPackage ({ mkDerivation, aeson, base, bytestring, filepath, hspec , mime-types, network-uri, tagsoup, text, time }: @@ -156566,7 +156684,6 @@ self: { testHaskellDepends = [ base bytestring filepath hspec ]; description = "JSON Feed"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "json-fu" = callPackage @@ -157328,8 +157445,8 @@ self: { }: mkDerivation { pname = "jsonrpc-conduit"; - version = "0.3.5"; - sha256 = "08w59nhb13vbimcad42k2n9mfd501wqc8zvdqzrxi0c2lkx0gfkx"; + version = "0.3.6"; + sha256 = "1czk9i9xkw4r6pg2x8ics4ki15icq2mh8zby2ci9ld5b6iz61196"; libraryHaskellDepends = [ aeson attoparsec base bytestring conduit conduit-extra mtl text transformers unordered-containers @@ -158346,8 +158463,8 @@ self: { }: mkDerivation { pname = "katip"; - version = "0.8.5.0"; - sha256 = "1kjzsx4fqbknnv158ypg5jhmw7ww1rk1mf99g3dci09xg97wmgjk"; + version = "0.8.6.0"; + sha256 = "02rq2rl9cgxfay6bnxzh7r354x20hj8zdc60pfhvh3l8naslyk5z"; libraryHaskellDepends = [ aeson async auto-update base bytestring containers either hostname microlens microlens-th monad-control mtl old-locale resourcet @@ -159234,8 +159351,8 @@ self: { }: mkDerivation { pname = "keid-core"; - version = "0.1.3.0"; - sha256 = "0nvrspga2s0w8yydk3m3vn1c9dv40zk66bbsfmskxck950n5qw6k"; + version = "0.1.3.1"; + sha256 = "0q9zrdqfbgyi6gjm8g0nhv74rbz2r56v4hlkqp89vs93sws5pnsy"; libraryHaskellDepends = [ adjunctions base binary bytestring cryptohash-md5 derive-storable derive-storable-plugin distributive file-embed foldl geomancy @@ -159369,19 +159486,19 @@ self: { }: mkDerivation { pname = "kempe"; - version = "0.2.0.7"; - sha256 = "0x0915nnrm03fryvwp0rcwvvqsbs1n639yjv509iz2v7wdw5kas8"; + version = "0.2.0.9"; + sha256 = "0jjm31zngnyg9k0i033zwikkjk6n490j1jjrkvnzhcvm0rjvh5vj"; isLibrary = false; isExecutable = true; enableSeparateDataOutput = true; libraryHaskellDepends = [ - array base bytestring composition-prelude containers deepseq extra + array base bytestring composition-prelude containers deepseq microlens microlens-mtl mtl prettyprinter process temporary text transformers ]; libraryToolDepends = [ alex happy ]; executableHaskellDepends = [ - base bytestring optparse-applicative prettyprinter + base bytestring optparse-applicative prettyprinter text ]; testHaskellDepends = [ base bytestring composition-prelude deepseq extra filepath @@ -159449,13 +159566,14 @@ self: { , fsnotify, hspec, http-client, http-conduit, http-reverse-proxy , http-types, HUnit, lifted-base, mtl, network, process, random , regex-tdfa, stm, tar, template-haskell, text, time, tls - , transformers, unix, unix-compat, unordered-containers, vector - , wai, wai-app-static, wai-extra, warp, warp-tls, yaml, zlib + , tls-session-manager, transformers, unix, unix-compat + , unordered-containers, vector, wai, wai-app-static, wai-extra + , warp, warp-tls, yaml, zlib }: mkDerivation { pname = "keter"; - version = "1.4.3.2"; - sha256 = "13sa6yjpkgqak7nnjmws928jm46839zbcdxi7whzhp1snwn9cb1k"; + version = "1.5"; + sha256 = "0ifz4la1hxv53cz21p3b6cn2mj4ivqj77y5ppyy47dfsbsr1ihal"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -159464,8 +159582,9 @@ self: { directory filepath fsnotify http-client http-conduit http-reverse-proxy http-types lifted-base mtl network process random regex-tdfa stm tar template-haskell text time tls - transformers unix unix-compat unordered-containers vector wai - wai-app-static wai-extra warp warp-tls yaml zlib + tls-session-manager transformers unix unix-compat + unordered-containers vector wai wai-app-static wai-extra warp + warp-tls yaml zlib ]; executableHaskellDepends = [ base data-default filepath ]; testHaskellDepends = [ @@ -159781,8 +159900,8 @@ self: { }: mkDerivation { pname = "kicad-data"; - version = "0.5.0"; - sha256 = "0nbzprp6j1d6l507h9s9c82y130w5b0jqlmc3dxd1ns2q5qf8cin"; + version = "0.5.1"; + sha256 = "1mqp7ddfd0bs9dg6p1px74chqmd23qvqzzp78z0mbfa8nnqkbc36"; libraryHaskellDepends = [ base ieee754 lens-family parsec pretty-compact ]; @@ -159869,8 +159988,8 @@ self: { ({ mkDerivation, base, kind-apply }: mkDerivation { pname = "kind-generics"; - version = "0.4.1.0"; - sha256 = "1ldfi5rvs3mxlbpy0nfyx8mq58xjkk76c13fmvmgqcpgb8gvmrnx"; + version = "0.4.1.2"; + sha256 = "0p5svycdf3vwfz871acv2a66qm0ab67ygl0hjdpn01qcl1mzghhm"; libraryHaskellDepends = [ base kind-apply ]; description = "Generic programming in GHC style for arbitrary kinds and GADTs"; license = lib.licenses.bsd3; @@ -161491,6 +161610,7 @@ self: { description = "LambdaCube 3D IR"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "lambdacube-edsl" = callPackage @@ -161528,6 +161648,7 @@ self: { description = "3D rendering engine written entirely in Haskell"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "lambdacube-examples" = callPackage @@ -162143,15 +162264,15 @@ self: { license = lib.licenses.gpl3Only; }) {}; - "language-docker_10_2_0" = callPackage + "language-docker_10_3_0" = callPackage ({ mkDerivation, base, bytestring, containers, data-default-class , hspec, hspec-megaparsec, HUnit, megaparsec, prettyprinter , QuickCheck, split, text, time }: mkDerivation { pname = "language-docker"; - version = "10.2.0"; - sha256 = "193hi4ls55pzybal7q4dlzdz1a8da2155a501h02j1w4nb25glrq"; + version = "10.3.0"; + sha256 = "1vwgm2902xzmcq9bkjs4nah5jcijmqa7qviaz96awgb6rc5wamnb"; libraryHaskellDepends = [ base bytestring containers data-default-class megaparsec prettyprinter split text time @@ -162453,6 +162574,28 @@ self: { broken = true; }) {}; + "language-javascript_0_7_0_0" = callPackage + ({ mkDerivation, alex, array, base, blaze-builder, bytestring + , Cabal, containers, happy, hspec, mtl, QuickCheck, text + , utf8-light, utf8-string + }: + mkDerivation { + pname = "language-javascript"; + version = "0.7.0.0"; + sha256 = "15bpqpkjf2y3fk8wff9zlnkpsjc63bnbvhlkxrs9alj0bikq17nk"; + libraryHaskellDepends = [ + array base blaze-builder bytestring containers mtl text utf8-string + ]; + libraryToolDepends = [ alex happy ]; + testHaskellDepends = [ + array base blaze-builder bytestring Cabal containers hspec mtl + QuickCheck utf8-light utf8-string + ]; + description = "Parser for JavaScript"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "language-javascript" = callPackage ({ mkDerivation, alex, array, base, blaze-builder, bytestring , Cabal, containers, happy, hspec, mtl, QuickCheck, text @@ -163149,6 +163292,7 @@ self: { description = "Numerical Linear Algebra using LAPACK"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "lapack_0_4" = callPackage @@ -163180,6 +163324,7 @@ self: { description = "Numerical Linear Algebra using LAPACK"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "lapack-carray" = callPackage @@ -163196,7 +163341,6 @@ self: { ]; description = "Auto-generated interface to Fortran LAPACK via CArrays"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "lapack-comfort-array" = callPackage @@ -163213,7 +163357,6 @@ self: { ]; description = "Auto-generated interface to Fortran LAPACK via comfort-array"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "lapack-ffi" = callPackage @@ -163226,8 +163369,6 @@ self: { libraryPkgconfigDepends = [ liblapack ]; description = "Auto-generated interface to Fortran LAPACK"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {inherit (pkgs) liblapack;}; "lapack-ffi-tools" = callPackage @@ -163595,6 +163736,31 @@ self: { license = lib.licenses.bsd3; }) {}; + "lattices_2_0_3" = callPackage + ({ mkDerivation, base, base-compat, containers, deepseq, hashable + , integer-logarithms, OneTuple, QuickCheck, quickcheck-instances + , semigroupoids, tagged, tasty, tasty-quickcheck, transformers + , universe-base, universe-reverse-instances, unordered-containers + }: + mkDerivation { + pname = "lattices"; + version = "2.0.3"; + sha256 = "1mn78xqwsksybggnsnx8xkmzlc9his1si14dy5v6vmlchkjym9qg"; + libraryHaskellDepends = [ + base base-compat containers deepseq hashable integer-logarithms + OneTuple QuickCheck semigroupoids tagged transformers universe-base + universe-reverse-instances unordered-containers + ]; + testHaskellDepends = [ + base base-compat containers QuickCheck quickcheck-instances tasty + tasty-quickcheck transformers universe-base + universe-reverse-instances unordered-containers + ]; + description = "Fine-grained library for constructing and manipulating lattices"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "launchdarkly-server-sdk" = callPackage ({ mkDerivation, aeson, attoparsec, base, base16-bytestring , bytestring, bytestring-conversion, clock, containers, cryptohash @@ -164144,8 +164310,8 @@ self: { }: mkDerivation { pname = "ldap-scim-bridge"; - version = "0.4"; - sha256 = "1xjnph3ndqwzyng0227jp6dw5rfyiqy9nraya05nnic69526hj7h"; + version = "0.6"; + sha256 = "0jlqq83mikf5j5hapd3ijf3ywzivhhj4702yl43b4ysqcq83bj7i"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -164822,24 +164988,6 @@ self: { }) {}; "lens-aeson" = callPackage - ({ mkDerivation, aeson, attoparsec, base, bytestring, lens - , scientific, text, unordered-containers, vector - }: - mkDerivation { - pname = "lens-aeson"; - version = "1.1.1"; - sha256 = "1g37c8p25by3hvy5lmq4rqyl9wxmxmci2h16rj4i5jcp7slf3mvg"; - revision = "1"; - editedCabalFile = "16n6id5l84v2n3yd8n5i2my4s4p8m0z85hgbzfrpm3rhr1haja00"; - libraryHaskellDepends = [ - aeson attoparsec base bytestring lens scientific text - unordered-containers vector - ]; - description = "Law-abiding lenses for aeson"; - license = lib.licenses.mit; - }) {}; - - "lens-aeson_1_1_2" = callPackage ({ mkDerivation, aeson, attoparsec, base, bytestring, lens , scientific, text, unordered-containers, vector }: @@ -164853,7 +165001,6 @@ self: { ]; description = "Law-abiding lenses for aeson"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "lens-core" = callPackage @@ -165285,6 +165432,8 @@ self: { pname = "lenses"; version = "0.1.8"; sha256 = "1wwl0f1f1scflnbjgqcinkpvpvhn21942bfbg8vlimdap6i5d49h"; + revision = "1"; + editedCabalFile = "0689mj31f8najq70lbpdgyiccpdz4w8bz5d2hlb0ksvw70b0m6kx"; libraryHaskellDepends = [ base mtl template-haskell ]; description = "Simple Functional Lenses"; license = lib.licenses.bsd3; @@ -165312,8 +165461,8 @@ self: { }: mkDerivation { pname = "lentil"; - version = "1.5.2.0"; - sha256 = "0mkr8ng7i4cli8wscqy2l8112nr7wdg8dh32li354fvahmv6i4si"; + version = "1.5.3.0"; + sha256 = "14fpvclm0xvwsgc2hgnq3jxlh5mdbq7gn713nnblc92pghfgbx18"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -166789,6 +166938,21 @@ self: { license = lib.licenses.bsd3; }) {}; + "libyaml-streamly" = callPackage + ({ mkDerivation, base, bytestring, safe-exceptions, streamly }: + mkDerivation { + pname = "libyaml-streamly"; + version = "0.2.0"; + sha256 = "0lvpavy78clizrizj7zlj9msgfwkhj3c6shnss7swnp1xfi1a1k9"; + libraryHaskellDepends = [ + base bytestring safe-exceptions streamly + ]; + description = "Low-level, streaming YAML interface via streamly"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; + }) {}; + "libzfs" = callPackage ({ mkDerivation, base, mtl, nvpair, transformers, zfs }: mkDerivation { @@ -166958,8 +167122,8 @@ self: { }: mkDerivation { pname = "lifted-async"; - version = "0.10.2.1"; - sha256 = "0j4f5471qfxkxy84ri87bcvp30ikh4m30imcggwn8m5v8igp218d"; + version = "0.10.2.2"; + sha256 = "1pm7vfrk0vx3rg5ay81xmjfjw1l3s1cqa70frlwqnky7r2csds2h"; libraryHaskellDepends = [ async base constraints lifted-base monad-control transformers-base ]; @@ -168571,6 +168735,43 @@ self: { }) {inherit (pkgs) git; inherit (pkgs) nettools; inherit (pkgs) z3;}; + "liquid-fixpoint_8_10_7" = callPackage + ({ mkDerivation, aeson, ansi-terminal, array, ascii-progress, async + , attoparsec, base, binary, boxes, bytestring, cereal, cmdargs + , containers, deepseq, directory, fgl, filepath, git, hashable + , intern, megaparsec, mtl, nettools, parallel, parser-combinators + , pretty, process, rest-rewrite, stm, store, syb, tasty + , tasty-ant-xml, tasty-hunit, tasty-quickcheck, tasty-rerun, text + , transformers, unordered-containers, z3 + }: + mkDerivation { + pname = "liquid-fixpoint"; + version = "8.10.7"; + sha256 = "02zih8q3kv94s1l4m9d8f3d60idm1an23kxx0ahjfg8cdqgi3gym"; + configureFlags = [ "-fbuild-external" ]; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson ansi-terminal array ascii-progress async attoparsec base + binary boxes bytestring cereal cmdargs containers deepseq directory + fgl filepath hashable intern megaparsec mtl parallel + parser-combinators pretty process rest-rewrite stm store syb text + transformers unordered-containers + ]; + executableHaskellDepends = [ base ]; + testHaskellDepends = [ + base containers directory filepath hashable mtl process stm tasty + tasty-ant-xml tasty-hunit tasty-quickcheck tasty-rerun transformers + unordered-containers + ]; + testSystemDepends = [ git nettools z3 ]; + doCheck = false; + description = "Predicate Abstraction-based Horn-Clause/Implication Constraint Solver"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {inherit (pkgs) git; inherit (pkgs) nettools; + inherit (pkgs) z3;}; + "liquid-ghc-prim" = callPackage ({ mkDerivation, base, Cabal, ghc-prim, liquidhaskell }: mkDerivation { @@ -168653,38 +168854,38 @@ self: { "liquidhaskell" = callPackage ({ mkDerivation, aeson, base, binary, bytestring, Cabal, cereal - , cmdargs, containers, data-default, deepseq, Diff, directory - , extra, filepath, fingertree, ghc, ghc-boot, ghc-paths, ghc-prim - , githash, gitrev, hashable, hscolour, liquid-fixpoint, mtl, optics - , optparse-applicative, optparse-simple, parsec, pretty, process - , split, stm, string-conv, syb, tagged, tasty, tasty-ant-xml - , tasty-golden, tasty-hunit, tasty-rerun, template-haskell - , temporary, text, time, transformers, unordered-containers, vector - , z3 + , cmdargs, containers, data-default, data-fix, deepseq, Diff + , directory, exceptions, extra, filepath, fingertree, free, ghc + , ghc-boot, ghc-paths, ghc-prim, githash, gitrev, hashable + , hscolour, liquid-fixpoint, megaparsec, mtl, optics + , optparse-applicative, optparse-simple, pretty, process + , recursion-schemes, split, stm, string-conv, syb, tagged, tasty + , tasty-ant-xml, tasty-golden, tasty-hunit, tasty-rerun + , template-haskell, temporary, text, th-compat, time, transformers + , unordered-containers, vector, z3 }: mkDerivation { pname = "liquidhaskell"; - version = "0.8.10.2"; - sha256 = "0byh5lia3kb44sgmilya881dp9il3n5qvrn16brnkvl9xhr9rdyi"; - revision = "1"; - editedCabalFile = "13xzhr99z459h6kd7h9y3pyyjnvsxwapjiayjr3yq2nyqhpyjygw"; + version = "0.8.10.7"; + sha256 = "02yaiwlq1xbdshmi655cwi8xnydrwpb3k1rsh00cdx6d8ab753kz"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; libraryHaskellDepends = [ aeson base binary bytestring Cabal cereal cmdargs containers - data-default deepseq Diff directory extra filepath fingertree ghc - ghc-boot ghc-paths ghc-prim githash gitrev hashable hscolour - liquid-fixpoint mtl optics optparse-applicative optparse-simple - parsec pretty split syb template-haskell temporary text time - transformers unordered-containers vector + data-default data-fix deepseq Diff directory exceptions extra + filepath fingertree free ghc ghc-boot ghc-paths ghc-prim githash + gitrev hashable hscolour liquid-fixpoint megaparsec mtl optics + optparse-applicative optparse-simple pretty recursion-schemes split + syb template-haskell temporary text th-compat time transformers + unordered-containers vector ]; executableHaskellDepends = [ base ]; testHaskellDepends = [ - base containers directory extra filepath ghc liquid-fixpoint mtl - optparse-applicative parsec process stm string-conv syb tagged - tasty tasty-ant-xml tasty-golden tasty-hunit tasty-rerun text - transformers + base containers directory extra filepath ghc liquid-fixpoint + megaparsec mtl optparse-applicative process stm string-conv syb + tagged tasty tasty-ant-xml tasty-golden tasty-hunit tasty-rerun + text transformers ]; testSystemDepends = [ z3 ]; description = "Liquid Types for Haskell"; @@ -169614,8 +169815,8 @@ self: { ({ mkDerivation, base, enumset, LLVM }: mkDerivation { pname = "llvm-ffi"; - version = "10.0"; - sha256 = "0damvra488px3gskqxyyb0rysyh6sza27q190c01i1icisalc8dh"; + version = "13.0"; + sha256 = "039yrihb8lwnbjzif4g8cg0i9xhzaghkklfpksmisrq0ikvyy43r"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base enumset ]; @@ -169874,8 +170075,8 @@ self: { }: mkDerivation { pname = "llvm-tf"; - version = "9.2.0.1"; - sha256 = "0icn48k9g1gy335rmwb06jgffywjfyf3as7ihm0006l07nvyf63q"; + version = "12.0"; + sha256 = "1j1cfx2ja45nyzv8yivh1803yx6cywikj4pryp74pl0bkdjszv60"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -170659,17 +170860,6 @@ self: { }) {}; "logfloat" = callPackage - ({ mkDerivation, array, base }: - mkDerivation { - pname = "logfloat"; - version = "0.13.3.3"; - sha256 = "10kza99pzs0ajn6xqd66sm059xp43i2sl0mnd8257q1av1qvsx7p"; - libraryHaskellDepends = [ array base ]; - description = "Log-domain floating point numbers"; - license = lib.licenses.bsd3; - }) {}; - - "logfloat_0_13_4" = callPackage ({ mkDerivation, array, base }: mkDerivation { pname = "logfloat"; @@ -170678,7 +170868,6 @@ self: { libraryHaskellDepends = [ array base ]; description = "Log-domain floating point numbers"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "logfmt" = callPackage @@ -171722,6 +171911,18 @@ self: { broken = true; }) {}; + "lpeg" = callPackage + ({ mkDerivation, base, lua, tasty, tasty-hunit }: + mkDerivation { + pname = "lpeg"; + version = "1.0.0"; + sha256 = "01502izg6fkkp93vc2sr4csx7crqlx7zxgk85rm5kfdx7vh7qjfs"; + libraryHaskellDepends = [ base lua ]; + testHaskellDepends = [ base lua tasty tasty-hunit ]; + description = "LPeg – Parsing Expression Grammars For Lua"; + license = lib.licenses.mit; + }) {}; + "lrucache" = callPackage ({ mkDerivation, base, containers, contravariant }: mkDerivation { @@ -171951,6 +172152,8 @@ self: { pname = "lsp-types"; version = "1.2.0.0"; sha256 = "1axl62yafkxh414dxr5i7pwqw0s3kkqphs7b259qk33vin3qayk3"; + revision = "1"; + editedCabalFile = "07fmcyqq20q1g8zc61jz7vz8fdpn5p1nrf3yda28qfdnfimb48mc"; libraryHaskellDepends = [ aeson base binary bytestring containers data-default deepseq dependent-sum dependent-sum-template directory filepath hashable @@ -171972,6 +172175,8 @@ self: { pname = "lsp-types"; version = "1.3.0.1"; sha256 = "05zgd99y7xnxnydisq5x24n1af2isar172p247hb5q0mp12hdd3z"; + revision = "1"; + editedCabalFile = "031b69fxi8m4fcwwgqb7cf4k806ikkmjqnn3wv6bn3sny1hn5gg7"; libraryHaskellDepends = [ aeson base binary bytestring containers data-default deepseq dependent-sum dependent-sum-template Diff directory dlist filepath @@ -172129,15 +172334,28 @@ self: { }) {}; "lua" = callPackage - ({ mkDerivation, base, bytestring, tasty, tasty-hunit }: + ({ mkDerivation, base, lua5_3, tasty, tasty-hunit }: mkDerivation { pname = "lua"; - version = "1.0.0"; - sha256 = "0ly10sy9xlvalaximff287wd6hr3hxqicsx5alwpqbg9ajxlx798"; - libraryHaskellDepends = [ base bytestring ]; - testHaskellDepends = [ base bytestring tasty tasty-hunit ]; + version = "2.0.1"; + sha256 = "1ff50sqk52kpyam5mb66spnk8j1n8vbyqgd6p0kmhqpc71890zmp"; + configureFlags = [ "-fsystem-lua" "-f-use-pkgconfig" ]; + libraryHaskellDepends = [ base ]; + librarySystemDepends = [ lua5_3 ]; + testHaskellDepends = [ base tasty tasty-hunit ]; description = "Lua, an embeddable scripting language"; license = lib.licenses.mit; + }) {inherit (pkgs) lua5_3;}; + + "lua-arbitrary" = callPackage + ({ mkDerivation, base, lua, QuickCheck }: + mkDerivation { + pname = "lua-arbitrary"; + version = "1.0.0"; + sha256 = "13kfpiyln1i3d1a47fpf00lrcj4m9dyg80zrqclx7wzy9p8ixh7l"; + libraryHaskellDepends = [ base lua QuickCheck ]; + description = "Arbitrary instances for Lua types"; + license = lib.licenses.mit; }) {}; "lua-bc" = callPackage @@ -172274,6 +172492,21 @@ self: { hydraPlatforms = lib.platforms.none; }) {}; + "lucid-alpine" = callPackage + ({ mkDerivation, base, lucid, text }: + mkDerivation { + pname = "lucid-alpine"; + version = "0.1.0.2"; + sha256 = "1ifa7hmbxzb6mni0q80a2p4j1yh9x1b95acki5fjx33n36f6bg61"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ base lucid text ]; + executableHaskellDepends = [ base lucid text ]; + testHaskellDepends = [ base lucid text ]; + description = "Use Alpine.js in your lucid templates"; + license = lib.licenses.bsd3; + }) {}; + "lucid-cdn" = callPackage ({ mkDerivation, base, lucid }: mkDerivation { @@ -172329,6 +172562,18 @@ self: { license = lib.licenses.bsd3; }) {}; + "lucid-htmx" = callPackage + ({ mkDerivation, base, lucid, servant, text }: + mkDerivation { + pname = "lucid-htmx"; + version = "0.1.0.2"; + sha256 = "1dnkp8l6niy2h7262pr1n798jrfnzz8n0ji00cj8v3d50av4qx0s"; + libraryHaskellDepends = [ base lucid servant text ]; + testHaskellDepends = [ base lucid servant text ]; + description = "Use htmx in your lucid templates"; + license = lib.licenses.bsd3; + }) {}; + "lucid-svg" = callPackage ({ mkDerivation, base, blaze-builder, lucid, text, transformers }: mkDerivation { @@ -172906,6 +173151,8 @@ self: { pname = "lzma-static"; version = "5.2.5.4"; sha256 = "0ql96kb7hg50d1flk36999p5p05bqs7rp7a59ys4q02423mq1z7b"; + revision = "2"; + editedCabalFile = "0dvqqjihfzkcqaahicga0cnimcwh197dpj8spqrk9mmicmqs5gcr"; libraryHaskellDepends = [ base bytestring ]; testHaskellDepends = [ base bytestring HUnit QuickCheck tasty tasty-hunit tasty-quickcheck @@ -175197,25 +175444,28 @@ self: { license = lib.licenses.bsd3; }) {}; - "massiv-io_1_0_0_0" = callPackage - ({ mkDerivation, base, bytestring, Color, data-default-class - , deepseq, doctest, exceptions, filepath, hspec, hspec-discover - , JuicyPixels, massiv, massiv-test, netpbm, QuickCheck, random - , template-haskell, unliftio, vector + "massiv-io_1_0_0_1" = callPackage + ({ mkDerivation, base, bytestring, Color, criterion + , data-default-class, deepseq, doctest, exceptions, filepath, hspec + , hspec-discover, JuicyPixels, massiv, massiv-test, netpbm + , QuickCheck, random, unliftio, vector }: mkDerivation { pname = "massiv-io"; - version = "1.0.0.0"; - sha256 = "186zn0rw61hjsf99ry12qa7dmrjl92km8snksddfq9929q0dss6x"; + version = "1.0.0.1"; + sha256 = "121i65nihxrl71mp38fvc8p445v1l35s4jsb5s8l0nh61d4gax2p"; libraryHaskellDepends = [ base bytestring Color data-default-class deepseq exceptions filepath JuicyPixels massiv netpbm unliftio vector ]; testHaskellDepends = [ base bytestring doctest hspec JuicyPixels massiv massiv-test - QuickCheck random template-haskell + QuickCheck random ]; testToolDepends = [ hspec-discover ]; + benchmarkHaskellDepends = [ + base bytestring Color criterion massiv + ]; description = "Import/export of Image files into massiv Arrays"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; @@ -175780,6 +176030,29 @@ self: { license = lib.licenses.bsd3; }) {}; + "matplotlib_0_7_6" = callPackage + ({ mkDerivation, ad, aeson, base, bytestring, containers, deepseq + , directory, filepath, process, random, raw-strings-qq, split + , tasty, tasty-expected-failure, tasty-golden, tasty-hunit + , temporary + }: + mkDerivation { + pname = "matplotlib"; + version = "0.7.6"; + sha256 = "0wykzz4d6a55x3bxn9r01bvgvz26yvldgyrnz87rqncxymdawmd4"; + libraryHaskellDepends = [ + aeson base bytestring containers deepseq filepath process split + temporary + ]; + testHaskellDepends = [ + ad base bytestring directory process random raw-strings-qq split + tasty tasty-expected-failure tasty-golden tasty-hunit temporary + ]; + description = "Bindings to Matplotlib; a Python plotting library"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "matrices" = callPackage ({ mkDerivation, base, criterion, deepseq, primitive, tasty , tasty-hunit, tasty-quickcheck, vector @@ -176010,8 +176283,8 @@ self: { }: mkDerivation { pname = "matterhorn"; - version = "50200.13.0"; - sha256 = "1wyhqj7jvk94px3npid3lncyccv2xsc3rmfcw616xrf4xsqwisx2"; + version = "50200.14.0"; + sha256 = "0x0f7s4pz0ds1vg8v8qycafmg2i21542p8bmhhrzzwj2m99bgx5d"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -177424,8 +177697,8 @@ self: { ({ mkDerivation, base, template-haskell }: mkDerivation { pname = "memoize"; - version = "0.8.1"; - sha256 = "1kb2lkdaj1d89qf58mklfa4mvxqippc3hacsxz2qavvs4mi6in3l"; + version = "1.1.1"; + sha256 = "18xn1rb0wqxm0zi4rm5ipihj5kndmc3dbahxxwdpxwapsk4i9j1k"; libraryHaskellDepends = [ base template-haskell ]; testHaskellDepends = [ base ]; description = "A memoization library"; @@ -178502,6 +178775,28 @@ self: { license = lib.licenses.mit; }) {}; + "microlens-aeson_2_4_0" = callPackage + ({ mkDerivation, aeson, attoparsec, base, bytestring, deepseq + , hashable, microlens, scientific, tasty, tasty-hunit, text + , unordered-containers, vector + }: + mkDerivation { + pname = "microlens-aeson"; + version = "2.4.0"; + sha256 = "103r9i4ky58y34rb82dmw20npbzzk4brn9nn4650m7mdzcgmz0zm"; + libraryHaskellDepends = [ + aeson attoparsec base bytestring deepseq hashable microlens + scientific text unordered-containers vector + ]; + testHaskellDepends = [ + aeson base bytestring deepseq hashable microlens tasty tasty-hunit + text unordered-containers vector + ]; + description = "Law-abiding lenses for Aeson, using microlens"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {}; + "microlens-contra" = callPackage ({ mkDerivation, base, microlens }: mkDerivation { @@ -178532,8 +178827,8 @@ self: { }: mkDerivation { pname = "microlens-ghc"; - version = "0.4.13"; - sha256 = "1r6x788br3f9rksj0dmk1nyh5mfvd9zzasclf1mi3rxhb7c0j926"; + version = "0.4.13.1"; + sha256 = "0q079kjqah8nbr4lll1w9i1wb1ayia07qi6g50hfcpsfvwsrh8s6"; libraryHaskellDepends = [ array base bytestring containers microlens transformers ]; @@ -178656,28 +178951,6 @@ self: { }) {}; "microstache" = callPackage - ({ mkDerivation, aeson, base, bytestring, containers, deepseq - , directory, filepath, hspec, parsec, text, transformers - , unordered-containers, vector - }: - mkDerivation { - pname = "microstache"; - version = "1.0.1.2"; - sha256 = "1xdca11z5cy7vfy2dszhr6qvlrxw6pn0d9iri7mg56lvi02javik"; - revision = "1"; - editedCabalFile = "1l72cfbrr6kxh0z2dx2pghxl7ljlbmbk8s9wlgk35bjm925kkxfl"; - libraryHaskellDepends = [ - aeson base containers deepseq directory filepath parsec text - transformers unordered-containers vector - ]; - testHaskellDepends = [ - aeson base bytestring containers hspec parsec text - ]; - description = "Mustache templates for Haskell"; - license = lib.licenses.bsd3; - }) {}; - - "microstache_1_0_2" = callPackage ({ mkDerivation, aeson, base, bytestring, containers, deepseq , directory, filepath, hspec, parsec, text, transformers , unordered-containers, vector @@ -178695,7 +178968,6 @@ self: { ]; description = "Mustache templates for Haskell"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "microtimer" = callPackage @@ -178936,8 +179208,8 @@ self: { }: mkDerivation { pname = "mighttpd2"; - version = "4.0.0"; - sha256 = "0hmcshm81rfmwrxalfxdp2ck60g560172jwn37f031169v5qmz2s"; + version = "4.0.1"; + sha256 = "1vgdva68dmkmfchgf3lpa2lrs7di2v3s7snpaxbpyjbr9zrqw6gn"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -180322,7 +180594,7 @@ self: { broken = true; }) {}; - "mmark_0_0_7_3" = callPackage + "mmark_0_0_7_4" = callPackage ({ mkDerivation, aeson, base, case-insensitive, containers , criterion, deepseq, dlist, email-validate, foldl, hashable, hspec , hspec-megaparsec, html-entity-map, lucid, megaparsec, microlens @@ -180331,10 +180603,10 @@ self: { }: mkDerivation { pname = "mmark"; - version = "0.0.7.3"; - sha256 = "1gfl9jhqm1jaqxi0yxd8r4z3ai5c3f1wv53vjs0ln84qjpcqp30s"; - revision = "2"; - editedCabalFile = "01cd2k4jz3f2ryhxdya8biypxdl44236mnavfqx7fm7bkjz4j5x0"; + version = "0.0.7.4"; + sha256 = "0flsg9jsnzab74hfidrfdmjvarj3n86db4ysv007j2hlr3iynnxx"; + revision = "1"; + editedCabalFile = "05021pxrdgymlk51zs72mbf6lg3j0zf9f0sim1qlhviwp0dwk5nv"; enableSeparateDataOutput = true; libraryHaskellDepends = [ aeson base case-insensitive containers deepseq dlist email-validate @@ -180483,10 +180755,21 @@ self: { ({ mkDerivation, base }: mkDerivation { pname = "mmsyn2-array"; - version = "0.1.3.0"; - sha256 = "12sr98mwmqvljv5npcp3qjafrd7hwjwpswpqw6lyqmnjii3hwqmn"; + version = "0.3.0.0"; + sha256 = "0fmdql0jrzbr7yl0axk41l5xl476is5xp38p13179nppll44a5d4"; libraryHaskellDepends = [ base ]; - description = "A library with less dependencies that can be used for multiple Ord a => a -> b transformations"; + description = "A library that can be used for multiple Ord a => a -> b transformations"; + license = lib.licenses.mit; + }) {}; + + "mmsyn2-hashable" = callPackage + ({ mkDerivation, base, ghc-prim, hashable, hashtables }: + mkDerivation { + pname = "mmsyn2-hashable"; + version = "0.1.0.0"; + sha256 = "056x243nvvy1yb9x0pw4gpa2024kgpmh7vr6i0rl5svaa1zajbvx"; + libraryHaskellDepends = [ base ghc-prim hashable hashtables ]; + description = "A library that can be used for multiple Hashable a => a -> b transformations"; license = lib.licenses.mit; }) {}; @@ -180555,8 +180838,8 @@ self: { }: mkDerivation { pname = "mmsyn6ukr-array"; - version = "0.2.1.0"; - sha256 = "0hjpygn10k6d554nkkrmdxv6p8m2aalgs0m33j2gn7myfnzj39fl"; + version = "0.3.0.0"; + sha256 = "16niig3irz25g8lpx4bg6mf3i74n5162pv7555rkraxd91wy7hhw"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -183096,21 +183379,6 @@ self: { }) {}; "monoid-extras" = callPackage - ({ mkDerivation, base, criterion, groups, semigroupoids, semigroups - }: - mkDerivation { - pname = "monoid-extras"; - version = "0.5.1"; - sha256 = "0xfrkgqn9d31z54l617m3w3kkd5m9vjb4yl247r3zzql3mpb1f37"; - revision = "2"; - editedCabalFile = "0gbrwpr7rzh9mmf59yhs74hixgclmxngaxx51j7pvr6wnkbvz3a3"; - libraryHaskellDepends = [ base groups semigroupoids semigroups ]; - benchmarkHaskellDepends = [ base criterion semigroups ]; - description = "Various extra monoid-related definitions and utilities"; - license = lib.licenses.bsd3; - }) {}; - - "monoid-extras_0_6" = callPackage ({ mkDerivation, base, criterion, groups, semigroupoids, semigroups }: mkDerivation { @@ -183121,7 +183389,6 @@ self: { benchmarkHaskellDepends = [ base criterion semigroups ]; description = "Various extra monoid-related definitions and utilities"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "monoid-owns" = callPackage @@ -183175,8 +183442,8 @@ self: { }: mkDerivation { pname = "monoid-subclasses"; - version = "1.1.1"; - sha256 = "13nc9qcwz10y1gxdp277gqq675pbcxav35fwqnbyrvz9hx1m545x"; + version = "1.1.2"; + sha256 = "0c9amb4yw6487kbpy3gslhpzjkzz3kiwhzz9qrmv8l7cvc2m1cb3"; libraryHaskellDepends = [ base bytestring containers primes text vector ]; @@ -183275,8 +183542,10 @@ self: { }: mkDerivation { pname = "monomer"; - version = "1.1.1.0"; - sha256 = "0jv7yc3jclqkh6z5hq47ws6pia0bhqsig06r392k95y96kal07xr"; + version = "1.2.0.0"; + sha256 = "1hd65flmygy2afvnpjcj7l06ic1lycb6x5gbxhgmxxb2ilj6h6wf"; + revision = "1"; + editedCabalFile = "146sy318bf3bdv2xjnpxv0i8g5q04hq32grdjqs2nw2javx2qlc1"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -183978,6 +184247,39 @@ self: { broken = true; }) {}; + "mortred" = callPackage + ({ mkDerivation, base, binary-conduit, bytestring, conduit + , conduit-extra, errors, hspec, http-client, http-client-tls + , http-conduit, http-types, rio, text, transformers, typed-process + , webdriver, zip-stream + }: + mkDerivation { + pname = "mortred"; + version = "0.0.2"; + sha256 = "1xpz69aaqk660yw2sq402dn9rggzrgijswhn5swb0pwj7x13fp7n"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base binary-conduit bytestring conduit conduit-extra errors + http-client http-client-tls http-conduit http-types rio text + transformers typed-process webdriver zip-stream + ]; + executableHaskellDepends = [ + base binary-conduit bytestring conduit conduit-extra errors + http-client http-client-tls http-conduit http-types rio text + transformers typed-process webdriver zip-stream + ]; + testHaskellDepends = [ + base binary-conduit bytestring conduit conduit-extra errors hspec + http-client http-client-tls http-conduit http-types rio text + transformers typed-process webdriver zip-stream + ]; + description = "Library for setting up and running scrapers with webdriver"; + license = lib.licenses.bsd2; + hydraPlatforms = lib.platforms.none; + broken = true; + }) {}; + "mosaico-lib" = callPackage ({ mkDerivation, base, base-unicode-symbols, colour, diagrams-cairo , diagrams-core, diagrams-gtk, diagrams-lib, glib, gtk, JuicyPixels @@ -186304,8 +186606,8 @@ self: { ({ mkDerivation, base, bytestring }: mkDerivation { pname = "murmur-hash"; - version = "0.1.0.9"; - sha256 = "1bb58kfnzvx3mpc0rc0dhqc1fk36nm8prd6gvf20gk6lxaadpfc9"; + version = "0.1.0.10"; + sha256 = "145z91zkx8jdd3y181pi8z9imqjgpk99cl55pbda4fl201hasbz9"; libraryHaskellDepends = [ base bytestring ]; description = "MurmurHash2 implementation for Haskell"; license = lib.licenses.bsd3; @@ -187327,8 +187629,8 @@ self: { }: mkDerivation { pname = "mysql"; - version = "0.2.0.1"; - sha256 = "16m8hv9yy2nf4jwgqg6n9z53n2pzskbc3gwbp2i3kgff8wsmf8sd"; + version = "0.2.1"; + sha256 = "051w428arxbix06a52dacqjpnkfx42zbazxsd3l9d857dsd0kl3g"; setupHaskellDepends = [ base Cabal ]; libraryHaskellDepends = [ base bytestring containers ]; librarySystemDepends = [ libmysqlclient ]; @@ -187418,8 +187720,8 @@ self: { }: mkDerivation { pname = "mysql-simple"; - version = "0.4.6"; - sha256 = "1am8ck092s9cv4x1ambalil4mlazkp8w5qhjbl4nq0j2hpy73rby"; + version = "0.4.7"; + sha256 = "1mhmszpq64h8kxr20iaj1laq46wr2gaqc8xxq1k821i7jfxfld6j"; libraryHaskellDepends = [ attoparsec base base16-bytestring blaze-builder blaze-textual bytestring containers mysql old-locale pcre-light text time @@ -189217,20 +189519,6 @@ self: { }) {}; "netcode-io" = callPackage - ({ mkDerivation, base, bindings-DSL, libsodium }: - mkDerivation { - pname = "netcode-io"; - version = "0.0.2"; - sha256 = "0n66y9cxvljhsz4izbqlrxns5yv32lh6dnqs4ngr1bk5ms9wjps4"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ base bindings-DSL ]; - librarySystemDepends = [ libsodium ]; - description = "Bindings to the low-level netcode.io library."; - license = lib.licenses.bsd3; - }) {inherit (pkgs) libsodium;}; - - "netcode-io_0_0_3" = callPackage ({ mkDerivation, base, bindings-DSL, libsodium }: mkDerivation { pname = "netcode-io"; @@ -189242,7 +189530,6 @@ self: { librarySystemDepends = [ libsodium ]; description = "Bindings to the low-level netcode.io library."; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {inherit (pkgs) libsodium;}; "netcore" = callPackage @@ -191181,8 +191468,8 @@ self: { }: mkDerivation { pname = "newtype-generics"; - version = "0.6"; - sha256 = "04bymwhkvlsgcsd0v630mndrzf0xnh3v81ba6nfzwcvbg3ksr2wa"; + version = "0.6.1"; + sha256 = "1aswwfz3lc65n56l3vqcp5ak002vd11kcfz2is0a3584p8pz1zpw"; libraryHaskellDepends = [ base transformers ]; testHaskellDepends = [ base hspec ]; testToolDepends = [ hspec-discover ]; @@ -191372,8 +191659,8 @@ self: { }: mkDerivation { pname = "ngx-export-tools-extra"; - version = "0.8.0.0"; - sha256 = "03s47hzw82w2wgyffdqvgcf4i0nz1vmaim7f3j8pniaa2b3xj3gv"; + version = "0.8.2.0"; + sha256 = "1dkjfjgizi3sqnz894im70hgpabrngz6fqgzzizilg2hj0250xhm"; libraryHaskellDepends = [ aeson array base base64 binary bytestring case-insensitive containers ede enclosed-exceptions http-client http-types network @@ -191703,8 +191990,8 @@ self: { }: mkDerivation { pname = "nix-diff"; - version = "1.0.14"; - sha256 = "0d1m65iw0c4x56gbp2rff0k2b54zawr6wn5hiah4q3k0a75r17ny"; + version = "1.0.15"; + sha256 = "0sjnihdhiib45chc04hr38g12sgp9rmjx2fibha9qsqla3rjnx3y"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -191734,22 +192021,21 @@ self: { }) {}; "nix-freeze-tree" = callPackage - ({ mkDerivation, base, binary, bytestring, data-fix, directory + ({ mkDerivation, base, bytestring, cryptonite, data-fix, directory , directory-tree, hnix, hnix-store-core, HUnit - , optparse-applicative, path, prettyprinter, raw-strings-qq, tasty - , tasty-discover, tasty-hunit, text, transformers + , optparse-applicative, path, path-io, prettyprinter + , raw-strings-qq, tasty, tasty-discover, tasty-hunit, text + , transformers }: mkDerivation { pname = "nix-freeze-tree"; - version = "0.1.0.0"; - sha256 = "06l323g6qx87lbs9hbmnjr0b40f548w8496p7pihxrla1kb2v31x"; - revision = "1"; - editedCabalFile = "1lhhaaisiaj9hsifn5nv3mmkp10cn3szal3gsn4dx2j0h23b4f3p"; + version = "0.1.0.1"; + sha256 = "050wy6jyjd720k9bndrsh19v0zl987s0s5ym0192lgsh346q1r67"; isLibrary = false; isExecutable = true; libraryHaskellDepends = [ - base binary bytestring data-fix directory directory-tree hnix - hnix-store-core optparse-applicative path prettyprinter + base bytestring cryptonite data-fix directory directory-tree hnix + hnix-store-core optparse-applicative path path-io prettyprinter raw-strings-qq text transformers ]; executableHaskellDepends = [ base ]; @@ -193226,32 +193512,6 @@ self: { }) {}; "nri-observability" = callPackage - ({ mkDerivation, aeson, aeson-pretty, async, base, bugsnag-hs - , bytestring, conduit, directory, hostname, http-client - , http-client-tls, nri-env-parser, nri-prelude, random - , safe-exceptions, stm, text, time, unordered-containers, uuid - }: - mkDerivation { - pname = "nri-observability"; - version = "0.1.1.1"; - sha256 = "15vlk59jl8wsxw48r72hdxnhhgk4p5xx598nbzp3ap88iqhm35d5"; - libraryHaskellDepends = [ - aeson aeson-pretty async base bugsnag-hs bytestring conduit - directory hostname http-client http-client-tls nri-env-parser - nri-prelude random safe-exceptions stm text time - unordered-containers uuid - ]; - testHaskellDepends = [ - aeson aeson-pretty async base bugsnag-hs bytestring conduit - directory hostname http-client http-client-tls nri-env-parser - nri-prelude random safe-exceptions stm text time - unordered-containers uuid - ]; - description = "Report log spans collected by nri-prelude"; - license = lib.licenses.bsd3; - }) {}; - - "nri-observability_0_1_1_3" = callPackage ({ mkDerivation, aeson, aeson-pretty, async, base, bugsnag-hs , bytestring, conduit, directory, hostname, http-client , http-client-tls, nri-env-parser, nri-prelude, random @@ -193275,7 +193535,6 @@ self: { ]; description = "Report log spans collected by nri-prelude"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "nri-postgresql" = callPackage @@ -193305,33 +193564,6 @@ self: { }) {}; "nri-prelude" = callPackage - ({ mkDerivation, aeson, aeson-pretty, async, auto-update, base - , bytestring, containers, directory, exceptions, filepath, ghc - , hedgehog, junit-xml, pretty-diff, pretty-show, safe-coloured-text - , safe-coloured-text-terminfo, safe-exceptions, terminal-size, text - , time, vector - }: - mkDerivation { - pname = "nri-prelude"; - version = "0.6.0.3"; - sha256 = "1xv1khi5pv84haasrf24lyyi41zc5biyqlgahzlg4n3mci2zz9ik"; - libraryHaskellDepends = [ - aeson aeson-pretty async auto-update base bytestring containers - directory exceptions filepath ghc hedgehog junit-xml pretty-diff - pretty-show safe-coloured-text safe-coloured-text-terminfo - safe-exceptions terminal-size text time vector - ]; - testHaskellDepends = [ - aeson aeson-pretty async auto-update base bytestring containers - directory exceptions filepath ghc hedgehog junit-xml pretty-diff - pretty-show safe-coloured-text safe-coloured-text-terminfo - safe-exceptions terminal-size text time vector - ]; - description = "A Prelude inspired by the Elm programming language"; - license = lib.licenses.bsd3; - }) {}; - - "nri-prelude_0_6_0_5" = callPackage ({ mkDerivation, aeson, aeson-pretty, async, auto-update, base , bytestring, containers, directory, exceptions, filepath, ghc , hedgehog, junit-xml, pretty-diff, pretty-show, safe-coloured-text @@ -193356,7 +193588,6 @@ self: { ]; description = "A Prelude inspired by the Elm programming language"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "nri-redis" = callPackage @@ -193748,8 +193979,8 @@ self: { pname = "numeric-kinds"; version = "0.1.0.0"; sha256 = "0rdx39wa7kklx9a7i5rdwf541fxpz9v3n32rvy2fa6i7n4hr64s4"; - revision = "1"; - editedCabalFile = "0zbn5yxga0sknpa83a6v2gx3dhi1rgxlxh0p3d1gd37x2zyd8lxf"; + revision = "2"; + editedCabalFile = "1zlgarjmhp9mhlp8l1cygk570l0bc3yabid4c2bi1xm4ckii8cyc"; libraryHaskellDepends = [ base ]; description = "Type-level numeric types and classes"; license = lib.licenses.asl20; @@ -193774,8 +194005,8 @@ self: { pname = "numeric-logarithms"; version = "0.1.0.0"; sha256 = "1izd7gc9xdrs7a1wbzmhhkv8s9rw2mcq77agvr351dc5jyzdnwiy"; - revision = "2"; - editedCabalFile = "11lxh2lz3adwdb1hgxgqh2p2igqzbclpwal072fhdk1hcz987acq"; + revision = "3"; + editedCabalFile = "0641bzwzjd85xk8pjnh5jqd4m5sd50334vps9jbid3jhwlwycqg0"; libraryHaskellDepends = [ base integer-gmp ]; testHaskellDepends = [ base integer-gmp QuickCheck test-framework @@ -194690,18 +194921,15 @@ self: { }) {}; "objective" = callPackage - ({ mkDerivation, base, bifunctors, containers, exceptions, hashable - , monad-skeleton, mtl, profunctors, template-haskell, transformers - , transformers-compat, unordered-containers, void, witherable + ({ mkDerivation, base, exceptions, monad-skeleton, transformers + , witherable }: mkDerivation { pname = "objective"; - version = "1.2"; - sha256 = "0qbms1n31zafakhn6y0hdy1a3bv7l3z4gzfqc1iczbwnxamiiq0q"; + version = "1.3"; + sha256 = "0v1dvqnnmicayr80pkir89jnv5zl808vx54mzmk2xhrg4wl7zf8s"; libraryHaskellDepends = [ - base bifunctors containers exceptions hashable monad-skeleton mtl - profunctors template-haskell transformers transformers-compat - unordered-containers void witherable + base exceptions monad-skeleton transformers witherable ]; description = "Composable objects"; license = lib.licenses.bsd3; @@ -195749,34 +195977,6 @@ self: { }) {}; "opaleye" = callPackage - ({ mkDerivation, aeson, base, base16-bytestring, bytestring - , case-insensitive, containers, contravariant, dotenv, hspec - , hspec-discover, multiset, postgresql-simple, pretty - , product-profunctors, profunctors, QuickCheck, scientific - , semigroups, text, time, time-locale-compat, transformers, uuid - , void - }: - mkDerivation { - pname = "opaleye"; - version = "0.7.4.0"; - sha256 = "1v4gxqnjacyj7npcvl70dzksgl12qrgwscv4l47kvzmf76i1x6rd"; - libraryHaskellDepends = [ - aeson base base16-bytestring bytestring case-insensitive - contravariant postgresql-simple pretty product-profunctors - profunctors scientific semigroups text time time-locale-compat - transformers uuid void - ]; - testHaskellDepends = [ - aeson base bytestring containers contravariant dotenv hspec - hspec-discover multiset postgresql-simple product-profunctors - profunctors QuickCheck semigroups text time transformers uuid - ]; - testToolDepends = [ hspec-discover ]; - description = "An SQL-generating DSL targeting PostgreSQL"; - license = lib.licenses.bsd3; - }) {}; - - "opaleye_0_7_5_0" = callPackage ({ mkDerivation, aeson, base, base16-bytestring, bytestring , case-insensitive, containers, contravariant, dotenv, hspec , hspec-discover, multiset, postgresql-simple, pretty @@ -195786,8 +195986,8 @@ self: { }: mkDerivation { pname = "opaleye"; - version = "0.7.5.0"; - sha256 = "19y6a4qkzr8bm8fxwrlvlcjqvc12kagp0wrfqrr4gxvzi200plvr"; + version = "0.7.6.1"; + sha256 = "1kfi47vjg06c5r88n16cqnr6ywb3cs2w6a3w4wljal1r5cskqyay"; libraryHaskellDepends = [ aeson base base16-bytestring bytestring case-insensitive contravariant postgresql-simple pretty product-profunctors @@ -195803,7 +196003,6 @@ self: { testToolDepends = [ hspec-discover ]; description = "An SQL-generating DSL targeting PostgreSQL"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "opaleye-classy" = callPackage @@ -196568,6 +196767,8 @@ self: { pname = "openpgp-asciiarmor"; version = "0.1.2"; sha256 = "1g99llkpqp7r01xlbq9m9nrii33yagiy1ah4fgdcmjnkmqg64hjk"; + revision = "1"; + editedCabalFile = "0nm5c9x4nzqkklk7a8gkh3v0w08anz17y00h3av6ll260m6m8szy"; libraryHaskellDepends = [ attoparsec base base64-bytestring binary bytestring ]; @@ -197790,23 +197991,6 @@ self: { }) {}; "optparse-generic" = callPackage - ({ mkDerivation, base, bytestring, Only, optparse-applicative - , system-filepath, text, time, transformers, void - }: - mkDerivation { - pname = "optparse-generic"; - version = "1.4.5"; - sha256 = "06lyx1im1a5sxj2i6v3lzc16q8pk6lafqzqvdzg9aiximm3idy1a"; - libraryHaskellDepends = [ - base bytestring Only optparse-applicative system-filepath text time - transformers void - ]; - description = "Auto-generate a command-line parser for your datatype"; - license = lib.licenses.bsd3; - maintainers = with lib.maintainers; [ Gabriel439 ]; - }) {}; - - "optparse-generic_1_4_6" = callPackage ({ mkDerivation, base, bytestring, Only, optparse-applicative , system-filepath, text, time, transformers, transformers-compat , void @@ -197821,7 +198005,6 @@ self: { ]; description = "Auto-generate a command-line parser for your datatype"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; maintainers = with lib.maintainers; [ Gabriel439 ]; }) {}; @@ -199579,27 +199762,28 @@ self: { maintainers = with lib.maintainers; [ peti ]; }) {}; - "pandoc_2_14_2" = callPackage + "pandoc_2_16_1" = callPackage ({ mkDerivation, aeson, aeson-pretty, array, attoparsec, base , base64-bytestring, binary, blaze-html, blaze-markup, bytestring , case-insensitive, citeproc, commonmark, commonmark-extensions , commonmark-pandoc, connection, containers, data-default, deepseq , Diff, directory, doclayout, doctemplates, emojis, exceptions , file-embed, filepath, Glob, haddock-library, hslua - , hslua-module-path, hslua-module-system, hslua-module-text, HsYAML - , http-client, http-client-tls, http-types, ipynb, jira-wiki-markup - , JuicyPixels, mtl, network, network-uri, pandoc-types, parsec - , process, QuickCheck, random, safe, scientific, SHA, skylighting - , skylighting-core, split, syb, tagsoup, tasty, tasty-bench - , tasty-golden, tasty-hunit, tasty-lua, tasty-quickcheck, temporary - , texmath, text, text-conversions, time, unicode-collation - , unicode-transforms, unix, unordered-containers, xml, xml-conduit - , zip-archive, zlib + , hslua-marshalling, hslua-module-path, hslua-module-system + , hslua-module-text, hslua-module-version, http-client + , http-client-tls, http-types, ipynb, jira-wiki-markup, JuicyPixels + , mtl, network, network-uri, pandoc-types, parsec, pretty + , pretty-show, process, QuickCheck, random, safe, scientific, SHA + , skylighting, skylighting-core, split, syb, tagsoup, tasty + , tasty-bench, tasty-golden, tasty-hunit, tasty-lua + , tasty-quickcheck, temporary, texmath, text, text-conversions + , time, unicode-collation, unicode-transforms, unix, xml + , xml-conduit, yaml, zip-archive, zlib }: mkDerivation { pname = "pandoc"; - version = "2.14.2"; - sha256 = "1bjw5di5dwfpnxgkj2qmri8f1nv6yin23cd8s38chwan29vd7xrc"; + version = "2.16.1"; + sha256 = "1gjmry6bnwh20myhqsj8ysfdhhcq7ccawkykxf4k4bnp7yppdfza"; configureFlags = [ "-fhttps" "-f-trypandoc" ]; isLibrary = true; isExecutable = true; @@ -199610,13 +199794,13 @@ self: { commonmark commonmark-extensions commonmark-pandoc connection containers data-default deepseq directory doclayout doctemplates emojis exceptions file-embed filepath Glob haddock-library hslua - hslua-module-path hslua-module-system hslua-module-text HsYAML - http-client http-client-tls http-types ipynb jira-wiki-markup - JuicyPixels mtl network network-uri pandoc-types parsec process - random safe scientific SHA skylighting skylighting-core split syb - tagsoup temporary texmath text text-conversions time - unicode-collation unicode-transforms unix unordered-containers xml - xml-conduit zip-archive zlib + hslua-marshalling hslua-module-path hslua-module-system + hslua-module-text hslua-module-version http-client http-client-tls + http-types ipynb jira-wiki-markup JuicyPixels mtl network + network-uri pandoc-types parsec pretty pretty-show process random + safe scientific SHA skylighting skylighting-core split syb tagsoup + temporary texmath text text-conversions time unicode-collation + unicode-transforms unix xml xml-conduit yaml zip-archive zlib ]; executableHaskellDepends = [ base ]; testHaskellDepends = [ @@ -199703,6 +199887,8 @@ self: { pname = "pandoc-crossref"; version = "0.3.12.0"; sha256 = "0y991lp6bgjiz67b1w6jywhwzwq5kf385pzl91s4g22lfnhwc7sz"; + revision = "2"; + editedCabalFile = "1gms6jaj21sycg3r1yc61xb2p1a5x2cd1z29y6jcjrh02n96g3g4"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -200163,10 +200349,8 @@ self: { }: mkDerivation { pname = "pandoc-types"; - version = "1.22"; - sha256 = "0kr5n9yw59513pw2rjc65qs55iq0prn16prk4781arqdh7g7a09q"; - revision = "1"; - editedCabalFile = "11gfc2syn2c0x3hyyw3c6z9hxmhs8jgv2xnzr43ql00r76ka9s95"; + version = "1.22.1"; + sha256 = "0z2j306jsiriwhib0201hsllwyck7qcvqci5c25frwsmknr3mls2"; libraryHaskellDepends = [ aeson base bytestring containers deepseq ghc-prim QuickCheck syb text transformers @@ -200242,6 +200426,17 @@ self: { license = lib.licenses.mit; }) {}; + "pandora-io" = callPackage + ({ mkDerivation, ghc-prim, pandora }: + mkDerivation { + pname = "pandora-io"; + version = "0.4.7"; + sha256 = "1kdm9g651g0836q2rc8ahqa9ys72xsy8z1ssawf4d339f8id83v5"; + libraryHaskellDepends = [ ghc-prim pandora ]; + description = "..."; + license = lib.licenses.mit; + }) {}; + "pang-a-lambda" = callPackage ({ mkDerivation, base, bytestring, containers, IfElse, mtl, SDL , SDL-gfx, SDL-ttf, transformers, Yampa @@ -201038,8 +201233,8 @@ self: { pname = "parallel"; version = "3.2.2.0"; sha256 = "1xkfi96w6yfpppd0nw1rnszdxmvifwzm699ilv6332ra3akm610p"; - revision = "3"; - editedCabalFile = "1lv3y3zrdfc09nsiqxg7mzcahgnqi6z9caspd4lvifhhfrqy2722"; + revision = "4"; + editedCabalFile = "02y9cnk5vkz45zkhlimfa3rx6xsx6zy80aryc3q7rvi678gn7zqr"; libraryHaskellDepends = [ array base containers deepseq ghc-prim ]; description = "Parallel programming library"; license = lib.licenses.bsd3; @@ -201941,8 +202136,8 @@ self: { }: mkDerivation { pname = "parsley"; - version = "1.0.0.2"; - sha256 = "06rc8zcgp5zyvf17pgzf1nqlc3avdl8rmbwabkggk4v4x9rxwkjx"; + version = "1.0.0.3"; + sha256 = "1nw25yzyx5q38hll5mvgwijp1rxsgfcm1vmhchlb6a3phya12xhj"; libraryHaskellDepends = [ base parsley-core template-haskell text ]; @@ -201969,8 +202164,8 @@ self: { }: mkDerivation { pname = "parsley-core"; - version = "1.6.0.0"; - sha256 = "1hjsnwh3gxwk1jmc0xylvjpsa3shzvjb5sn1imypgnnb887iabv6"; + version = "1.7.2.0"; + sha256 = "1fwlpz4ysngncsjamxdk3fkv5rg47nbkah2dkrp1zjm5ckd1cgcs"; libraryHaskellDepends = [ array base bytestring containers dependent-map dependent-sum ghc-prim hashable mtl pretty-terminal template-haskell text @@ -201994,6 +202189,8 @@ self: { pname = "parsley-garnish"; version = "1.0.0.0"; sha256 = "1vxl3ibxa923q4vxhvgxhf41p6c9ynmr18mmr7yrjrnc7arn615f"; + revision = "1"; + editedCabalFile = "14jkdn998bfxrqxvwdn91i549kgd0hr3vq98d613advhbih9b4bi"; libraryHaskellDepends = [ base ghc ghc-tcplugins-extra parsley-core syb template-haskell ]; @@ -204077,8 +204274,8 @@ self: { }: mkDerivation { pname = "perceptual-hash"; - version = "0.1.4.2"; - sha256 = "08zb8060ixk67jhr9h74zix9m1svpigz5l4ii97qi88l1xdxfx36"; + version = "0.1.4.3"; + sha256 = "096kr8hjcqj6qdaynl5yll4q8544iwwkwa0ihzinpghi94yq97yv"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -204086,10 +204283,13 @@ self: { base bytestring hip JuicyPixels primitive vector vector-algorithms webp ]; + libraryToolDepends = [ cpphs ]; executableHaskellDepends = [ base containers filepath optparse-applicative par-traverse stm ]; + executableToolDepends = [ cpphs ]; testHaskellDepends = [ base hspec ]; + testToolDepends = [ cpphs ]; benchmarkHaskellDepends = [ base criterion deepseq filepath ]; benchmarkToolDepends = [ cpphs ]; description = "Find duplicate images"; @@ -204590,44 +204790,6 @@ self: { }) {}; "persistent" = callPackage - ({ mkDerivation, aeson, attoparsec, base, base64-bytestring - , blaze-html, bytestring, conduit, containers, criterion, deepseq - , fast-logger, file-embed, hspec, http-api-data, lift-type - , monad-logger, mtl, path-pieces, QuickCheck, quickcheck-instances - , resource-pool, resourcet, scientific, shakespeare, silently - , template-haskell, text, th-lift-instances, time, transformers - , unliftio, unliftio-core, unordered-containers, vector - }: - mkDerivation { - pname = "persistent"; - version = "2.13.1.2"; - sha256 = "09si4h64i9drqr80a2sxpxhmsinacqx9bvsc3jah5zlm915q092y"; - revision = "1"; - editedCabalFile = "0xasbm1m5az7anp1wqfr69j0b7jycg82qdcq4kd97lqdn7rqvhsp"; - libraryHaskellDepends = [ - aeson attoparsec base base64-bytestring blaze-html bytestring - conduit containers fast-logger http-api-data lift-type monad-logger - mtl path-pieces resource-pool resourcet scientific silently - template-haskell text th-lift-instances time transformers unliftio - unliftio-core unordered-containers vector - ]; - testHaskellDepends = [ - aeson attoparsec base base64-bytestring blaze-html bytestring - conduit containers fast-logger hspec http-api-data monad-logger mtl - path-pieces QuickCheck quickcheck-instances resource-pool resourcet - scientific shakespeare silently template-haskell text - th-lift-instances time transformers unliftio unliftio-core - unordered-containers vector - ]; - benchmarkHaskellDepends = [ - base criterion deepseq file-embed template-haskell text - ]; - description = "Type-safe, multi-backend data serialization"; - license = lib.licenses.mit; - maintainers = with lib.maintainers; [ psibi ]; - }) {}; - - "persistent_2_13_2_1" = callPackage ({ mkDerivation, aeson, attoparsec, base, base64-bytestring , blaze-html, bytestring, conduit, containers, criterion, deepseq , fast-logger, file-embed, hspec, http-api-data, lift-type @@ -204662,7 +204824,6 @@ self: { ]; description = "Type-safe, multi-backend data serialization"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; maintainers = with lib.maintainers; [ psibi ]; }) {}; @@ -205086,39 +205247,6 @@ self: { }) {}; "persistent-postgresql" = callPackage - ({ mkDerivation, aeson, attoparsec, base, blaze-builder, bytestring - , conduit, containers, fast-logger, hspec, hspec-expectations - , hspec-expectations-lifted, http-api-data, HUnit, monad-logger - , mtl, path-pieces, persistent, persistent-qq, persistent-test - , postgresql-libpq, postgresql-simple, QuickCheck - , quickcheck-instances, resource-pool, resourcet - , string-conversions, text, time, transformers, unliftio - , unliftio-core, unordered-containers, vector - }: - mkDerivation { - pname = "persistent-postgresql"; - version = "2.13.1.0"; - sha256 = "05bj3b7kdwaba3szrrsmafxr6vcnvdhq20jk5xx348jnf2flkw0i"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - aeson attoparsec base blaze-builder bytestring conduit containers - monad-logger mtl persistent postgresql-libpq postgresql-simple - resource-pool resourcet string-conversions text time transformers - unliftio-core - ]; - testHaskellDepends = [ - aeson base bytestring containers fast-logger hspec - hspec-expectations hspec-expectations-lifted http-api-data HUnit - monad-logger path-pieces persistent persistent-qq persistent-test - QuickCheck quickcheck-instances resourcet text time transformers - unliftio unliftio-core unordered-containers vector - ]; - description = "Backend for the persistent library using postgresql"; - license = lib.licenses.mit; - }) {}; - - "persistent-postgresql_2_13_2_1" = callPackage ({ mkDerivation, aeson, attoparsec, base, blaze-builder, bytestring , conduit, containers, fast-logger, hspec, hspec-expectations , hspec-expectations-lifted, http-api-data, HUnit, monad-logger @@ -205149,7 +205277,25 @@ self: { ]; description = "Backend for the persistent library using postgresql"; license = lib.licenses.mit; + }) {}; + + "persistent-postgresql-streaming" = callPackage + ({ mkDerivation, base, conduit, monad-logger, mtl, persistent + , persistent-postgresql, postgresql-simple, resourcet, text + , transformers + }: + mkDerivation { + pname = "persistent-postgresql-streaming"; + version = "0.1.0.0"; + sha256 = "0k9dvlhjhnrb64apr8w6hbyhvrvibgfszp2gm9zrks3mh729i5k3"; + libraryHaskellDepends = [ + base conduit monad-logger mtl persistent persistent-postgresql + postgresql-simple resourcet text transformers + ]; + description = "Memory-constant streaming of Persistent entities from PostgreSQL"; + license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "persistent-protobuf" = callPackage @@ -205384,10 +205530,8 @@ self: { }: mkDerivation { pname = "persistent-typed-db"; - version = "0.1.0.4"; - sha256 = "1dd5kig6zkiq5qkqv63icz9z8mn0b56b06w6z980hi7a2bmp6pk8"; - revision = "1"; - editedCabalFile = "07irkdph44vw5g8ixrpw3rlmx13nsxbbcznz2k2jiyw5i3nd1b94"; + version = "0.1.0.5"; + sha256 = "0xqvaypl987br15pymky9qa1z62sfa32kmcgpvnl8zpgdjsa17nc"; libraryHaskellDepends = [ aeson base bytestring conduit http-api-data monad-logger path-pieces persistent resource-pool resourcet template-haskell @@ -206102,8 +206246,8 @@ self: { ({ mkDerivation, base, filters-basic, mmsyn2-array }: mkDerivation { pname = "phonetic-languages-filters-array"; - version = "0.1.0.0"; - sha256 = "0gi2hbdzb62s0hvx9j8w936bwiypv6xvh5xndmx4w1kf8r2lkagy"; + version = "0.3.0.0"; + sha256 = "0g1nyab2cagppwj75vr2fj0yd9g3hs1qdkb2grj14j13bvaqbi7p"; libraryHaskellDepends = [ base filters-basic mmsyn2-array ]; description = "Allows to change the structure of the function output"; license = lib.licenses.mit; @@ -206174,8 +206318,8 @@ self: { }: mkDerivation { pname = "phonetic-languages-plus"; - version = "0.4.1.0"; - sha256 = "08qshrwh19wvav0j5h05x49m8i7j1p4lgzwpv86n5y34gx0bbfg2"; + version = "0.5.1.0"; + sha256 = "1cwj1i6illdaf51piidlbxdw61srql4p47kqz5sy9as251g7n1rm"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -206227,8 +206371,8 @@ self: { }: mkDerivation { pname = "phonetic-languages-simplified-base"; - version = "0.3.0.0"; - sha256 = "03wgw1fcfx3agznibfjqppcvh0c1rm87rprnwzx4id69sqb195ps"; + version = "0.4.0.0"; + sha256 = "1hifw367zc5zkrka4lpjl412ka9zsbdlmn58v2hmbm3j4c09phmj"; libraryHaskellDepends = [ base phonetic-languages-permutations-array subG ]; @@ -206265,8 +206409,8 @@ self: { }: mkDerivation { pname = "phonetic-languages-simplified-examples-array"; - version = "0.13.0.0"; - sha256 = "1zpbcp3ij8j2vmss511kvrzwzymnjmzqs628hv0n9nnzvgma5nn7"; + version = "0.14.1.0"; + sha256 = "170r88sys7xzdxmrq2l31a6g0pwzpwg601aj827f3gn5c0rm3l2p"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -206297,16 +206441,15 @@ self: { }) {}; "phonetic-languages-simplified-examples-common" = callPackage - ({ mkDerivation, base, heaps, mmsyn2-array - , phonetic-languages-constraints-array + ({ mkDerivation, base, heaps, phonetic-languages-constraints-array , phonetic-languages-ukrainian-array }: mkDerivation { pname = "phonetic-languages-simplified-examples-common"; - version = "0.2.0.0"; - sha256 = "1v2v571rjmfxqzdnm7z2v3dygknlk5nyvfyv7dkgzf7apmlmnpd2"; + version = "0.4.0.0"; + sha256 = "1pp4zisd56jzdiscf8r1022hlcgga1alh8mpzh1dmrsi98x5dnx2"; libraryHaskellDepends = [ - base heaps mmsyn2-array phonetic-languages-constraints-array + base heaps phonetic-languages-constraints-array phonetic-languages-ukrainian-array ]; description = "Some commonly used by phonetic-languages-simplified* series functions"; @@ -206327,8 +206470,8 @@ self: { }: mkDerivation { pname = "phonetic-languages-simplified-generalized-examples-array"; - version = "0.13.0.0"; - sha256 = "02f4hvzva39fjhbi4nhxf9n7fm5dvl35g3sb29cw66hbylcsrz2n"; + version = "0.13.1.0"; + sha256 = "15fwl0zzd2k90sjyj2whpsx60wi7ahxr1f2626jvqzq8x678z7fh"; libraryHaskellDepends = [ base heaps mmsyn2-array mmsyn3 parallel phonetic-languages-constraints-array @@ -206418,8 +206561,8 @@ self: { }: mkDerivation { pname = "phonetic-languages-simplified-properties-array"; - version = "0.9.2.0"; - sha256 = "1w5y1pw71yhm5zayrsp5qh4p6qldg79kh4ipcqzs25s8rbgksy7a"; + version = "0.11.0.0"; + sha256 = "1aazfaqvaf7sjidsnvs54nw4bbsnkygv1i3fw0xvcqqzygzns9gk"; libraryHaskellDepends = [ base phonetic-languages-rhythmicity phonetic-languages-simplified-base ukrainian-phonetics-basic-array @@ -206483,8 +206626,8 @@ self: { ({ mkDerivation, base, mmsyn2-array, mmsyn5 }: mkDerivation { pname = "phonetic-languages-ukrainian-array"; - version = "0.6.1.0"; - sha256 = "1ggwhfgfk1vrl5dw1yzd2xnmnk9r33fnfcydm6zskxairbgx7zkr"; + version = "0.8.0.0"; + sha256 = "12hpqlcwccv2c25fxyxq5vdnmzwqykcvmp8rj118hc3yssc2ygj8"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base mmsyn2-array mmsyn5 ]; @@ -206859,22 +207002,6 @@ self: { }) {}; "pid1" = callPackage - ({ mkDerivation, base, directory, process, unix }: - mkDerivation { - pname = "pid1"; - version = "0.1.2.0"; - sha256 = "0xkz4vdh8cblpl8k2xmqs8vwv2c0vpxdbikcf2dnmzbg9fdvz5wy"; - revision = "1"; - editedCabalFile = "11yg5pjci1d6p5ml0ic4vqn70vjx8vvhqs20rahgfqhh8palkyw9"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ base directory process unix ]; - executableHaskellDepends = [ base ]; - description = "Do signal handling and orphan reaping for Unix PID1 init processes"; - license = lib.licenses.mit; - }) {}; - - "pid1_0_1_3_0" = callPackage ({ mkDerivation, base, directory, process, unix }: mkDerivation { pname = "pid1"; @@ -206886,7 +207013,6 @@ self: { executableHaskellDepends = [ base ]; description = "Do signal handling and orphan reaping for Unix PID1 init processes"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "pidfile" = callPackage @@ -207419,20 +207545,20 @@ self: { "pipes-binary" = callPackage ({ mkDerivation, base, binary, bytestring, ghc-prim - , lens-family-core, pipes, pipes-bytestring, pipes-parse - , smallcheck, tasty, tasty-hunit, tasty-smallcheck, transformers + , lens-family-core, pipes, pipes-bytestring, pipes-parse, tasty + , tasty-hunit, tasty-quickcheck, transformers }: mkDerivation { pname = "pipes-binary"; - version = "0.4.2"; - sha256 = "1s3462i85zd6byr18mfabfmiapb0yy3fnrsaw6mnasw19kyxjngn"; + version = "0.4.3"; + sha256 = "1r3byrp8z99rkz2z7pjrz88i4y8qy1qy38ih363ky65r87hbw6d3"; libraryHaskellDepends = [ base binary bytestring ghc-prim pipes pipes-bytestring pipes-parse transformers ]; testHaskellDepends = [ base binary bytestring ghc-prim lens-family-core pipes pipes-parse - smallcheck tasty tasty-hunit tasty-smallcheck transformers + tasty tasty-hunit tasty-quickcheck transformers ]; description = "Encode and decode binary streams using the pipes and binary libraries"; license = lib.licenses.bsd3; @@ -208728,6 +208854,28 @@ self: { hydraPlatforms = lib.platforms.none; }) {}; + "pkgtreediff_0_5_0" = callPackage + ({ mkDerivation, async, base, directory, extra, filepath, Glob + , http-client, http-client-tls, http-directory, koji, rpm-nvr + , simple-cmd, simple-cmd-args, text + }: + mkDerivation { + pname = "pkgtreediff"; + version = "0.5.0"; + sha256 = "0zlz53adlah00zxbh4kqvpm3vinn0248n8rzdxpdsbrbrlnlj8y9"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ base rpm-nvr ]; + executableHaskellDepends = [ + async base directory extra filepath Glob http-client + http-client-tls http-directory koji rpm-nvr simple-cmd + simple-cmd-args text + ]; + description = "RPM package tree diff tool"; + license = lib.licenses.gpl3Only; + hydraPlatforms = lib.platforms.none; + }) {}; + "pktree" = callPackage ({ mkDerivation, base, containers }: mkDerivation { @@ -209350,8 +209498,8 @@ self: { pname = "plots"; version = "0.1.1.2"; sha256 = "01w56qhyw8w6g8xffrvkp7d6k8l4w9as8v900v29jaq7gz680fhs"; - revision = "1"; - editedCabalFile = "1qipj4sf4rfpzbqyiwqsq822n27r7ksqyg8qw9zc4l6zcgq5bsa1"; + revision = "2"; + editedCabalFile = "1h6jc8jlgqf7qcim6qd260m3z6bv5hpcg48xzbb81jmxsl374qf9"; libraryHaskellDepends = [ adjunctions base base-orphans colour containers data-default diagrams-core diagrams-lib directory distributive filepath @@ -209658,8 +209806,8 @@ self: { }: mkDerivation { pname = "pointed"; - version = "5.0.2"; - sha256 = "07p92y62dibys3xa59rvx52xyyr39nghl73z7hzwnksa3ry3vfmq"; + version = "5.0.3"; + sha256 = "0999bba0gbb2qhk1ydaslmdf7ca17ip751psi4phi1lhb250fl8b"; libraryHaskellDepends = [ base comonad containers data-default-class hashable kan-extensions semigroupoids semigroups stm tagged transformers @@ -209762,17 +209910,6 @@ self: { }) {}; "pointless-fun" = callPackage - ({ mkDerivation, base }: - mkDerivation { - pname = "pointless-fun"; - version = "1.1.0.6"; - sha256 = "0m5hwd0mr7bmb2sbs1qa7l65xrr5h2wjznknsrk1ga08qkd5jp6h"; - libraryHaskellDepends = [ base ]; - description = "Some common point-free combinators"; - license = lib.licenses.bsd3; - }) {}; - - "pointless-fun_1_1_0_8" = callPackage ({ mkDerivation, base }: mkDerivation { pname = "pointless-fun"; @@ -209781,7 +209918,6 @@ self: { libraryHaskellDepends = [ base ]; description = "Some common point-free combinators"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "pointless-haskell" = callPackage @@ -209901,6 +210037,30 @@ self: { license = lib.licenses.mit; }) {}; + "poker-base" = callPackage + ({ mkDerivation, base, containers, extra, generic-arbitrary, hspec + , prettyprinter, QuickCheck, safe-money, tasty, tasty-discover + , tasty-hspec, tasty-quickcheck, text + }: + mkDerivation { + pname = "poker-base"; + version = "0.1.0.0"; + sha256 = "1w8j62y95d521g9y6j9ikjhzhfnlnrk8mdfxkls270xwk7m6csj6"; + libraryHaskellDepends = [ + base containers generic-arbitrary prettyprinter QuickCheck + safe-money text + ]; + testHaskellDepends = [ + base containers extra hspec prettyprinter QuickCheck tasty + tasty-discover tasty-hspec tasty-quickcheck text + ]; + testToolDepends = [ tasty-discover ]; + description = "A library for core poker types"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; + }) {}; + "poker-eval" = callPackage ({ mkDerivation, array, base, mtl, poker-eval, random, vector }: mkDerivation { @@ -210266,8 +210426,8 @@ self: { pname = "polyparse"; version = "1.13"; sha256 = "0yvhg718dlksiw3v27m2d8m1sn4r4f5s0p56zq3lynhy1sc74k0w"; - revision = "2"; - editedCabalFile = "1n5q6w7x46cvcq7j1pg9jx9h72vcsc5di35rbkmwgjw6pq4w4gfl"; + revision = "3"; + editedCabalFile = "0hdd8vfdsipqmz1c8snnihff5419hc181ky8lspk8aq7pyv7ic45"; libraryHaskellDepends = [ base bytestring text ]; description = "A variety of alternative parser combinator libraries"; license = "LGPL"; @@ -210367,8 +210527,8 @@ self: { }: mkDerivation { pname = "polysemy-check"; - version = "0.7.0.0"; - sha256 = "1sb6gz5wz7b7gxmw0jci9kpaafk4m3rf7ghzsk2fnpvzya5fp6lg"; + version = "0.8.1.0"; + sha256 = "18nf74y8zcm3hi5gmg8zm6x13rwr17wvbw4bcm779l3v3y3ddwqw"; libraryHaskellDepends = [ base containers kind-generics kind-generics-th polysemy QuickCheck ]; @@ -210733,7 +210893,7 @@ self: { broken = true; }) {}; - "polysemy-plugin_0_4_0_0" = callPackage + "polysemy-plugin_0_4_1_0" = callPackage ({ mkDerivation, base, Cabal, cabal-doctest, containers, doctest , ghc, ghc-tcplugins-extra, hspec, hspec-discover , inspection-testing, polysemy, should-not-typecheck, syb @@ -210741,8 +210901,8 @@ self: { }: mkDerivation { pname = "polysemy-plugin"; - version = "0.4.0.0"; - sha256 = "0r3cy26smq3z1lw1pjjgankgal5m166c4cflm4chrw4bi056ipss"; + version = "0.4.1.0"; + sha256 = "1ry32mldi5mzlayb5anjzw4adqydilxfj1as01an2x9y0hp4yy00"; setupHaskellDepends = [ base Cabal cabal-doctest ]; libraryHaskellDepends = [ base containers ghc ghc-tcplugins-extra polysemy syb transformers @@ -210964,8 +211124,8 @@ self: { }: mkDerivation { pname = "polysemy-zoo"; - version = "0.7.0.1"; - sha256 = "1p3y12kcbqxnps8md3asa4dzczp00729rnsry80s6aijj78av1kf"; + version = "0.7.0.2"; + sha256 = "1lmwgdd47pcq32fzdhiv0rn319vfsy0fgyjfq7i983dqkq2pssl4"; libraryHaskellDepends = [ async base compact constraints containers contravariant exceptions ghc-prim mtl polysemy random reflection streaming text transformers @@ -211631,8 +211791,8 @@ self: { pname = "portray"; version = "0.2.0"; sha256 = "1kzzvwqphlg1dmd486ijkv6vsqmxnp8h05mwc8590yjxdln5vzdw"; - revision = "1"; - editedCabalFile = "0bl0kagjn1k58pq6zbdj2zyzhpdpzs7ra1vrr8a1qdkb11gmp4n2"; + revision = "2"; + editedCabalFile = "14fdpmwh4ghdc97361l7mny4p2fai2v6g445lw0ybjbxg44cij5r"; libraryHaskellDepends = [ base containers text wrapped ]; testHaskellDepends = [ base containers HUnit test-framework test-framework-hunit text @@ -211648,8 +211808,8 @@ self: { pname = "portray-diff"; version = "0.1.0.1"; sha256 = "1da884cj865q6g1bd1fhcazyl1nzxb0pk2nvhcpp4iqkjvhyd8hw"; - revision = "1"; - editedCabalFile = "1dfl488jq79l0k8d8s2q1wxdibvnrrl64sz8gdy9mp0nkd6vaszl"; + revision = "2"; + editedCabalFile = "112sp759wd5fr0nqrrnsj9m7pc209m4gyd1k16ps09gbwn40whd6"; libraryHaskellDepends = [ base containers dlist portray text wrapped ]; @@ -211664,8 +211824,8 @@ self: { pname = "portray-diff-hunit"; version = "0.1.0.0"; sha256 = "0gig1gvw0s7cl4jbffqh53r7lfs08clkcjpdypjjbpk0815pk34h"; - revision = "1"; - editedCabalFile = "023p7j386zbcmzsbdk7xk85ygi8qq4llh6zp6811grsyq3hfnsa1"; + revision = "2"; + editedCabalFile = "0bqr29g47rqdwrc2c3zsizgbis0wdwh1pz3a40pfr0va6c7fsj9m"; libraryHaskellDepends = [ base HUnit portray-diff portray-pretty pretty ]; @@ -211679,8 +211839,8 @@ self: { pname = "portray-diff-quickcheck"; version = "0.1.0.0"; sha256 = "1kif82y8bapf5d3awkfv7wp3ih89q3p14djanyz6jfapryhccm12"; - revision = "1"; - editedCabalFile = "0nf5wxwvs9sad3bphb8dci5d3nr982nr05y99fmsy3vdifi366l2"; + revision = "2"; + editedCabalFile = "0ynqqv3ilfwnj5vzs7rlng1w6r6zzqph0scsvy51dzy5al96hkgz"; libraryHaskellDepends = [ base portray-diff portray-pretty QuickCheck ]; @@ -211696,8 +211856,8 @@ self: { pname = "portray-pretty"; version = "0.1.0.2"; sha256 = "1gh50r77yz1l8qkhdz96bds2l0d5zi75fkir27x3si406h7sdic9"; - revision = "1"; - editedCabalFile = "0v30gdwjb0339q5phkbnwxj687w33rgivy772j37vp51zpiylnak"; + revision = "2"; + editedCabalFile = "1i6lgiin3k8d6y683vn5jk5mnbnc2hlamf3n48yvx6z19p65rmzi"; libraryHaskellDepends = [ base portray portray-diff pretty text ]; testHaskellDepends = [ base HUnit portray portray-diff pretty test-framework @@ -211716,8 +211876,8 @@ self: { pname = "portray-prettyprinter"; version = "0.2.0"; sha256 = "16g55vjcfawx1jxmgy3zgl6bqv67h831z00912fbfh878s1s24ic"; - revision = "1"; - editedCabalFile = "1w7y8j2sx9wjyv5iknxjyq3r02l1kym85k1gq6carr49lf05s567"; + revision = "2"; + editedCabalFile = "0b944c4fws0pvfq9vbr4dvxz6irmqdwvgv6qg1r3bhz2lqg5q434"; libraryHaskellDepends = [ base portray portray-diff prettyprinter prettyprinter-ansi-terminal text @@ -212347,6 +212507,33 @@ self: { broken = true; }) {}; + "postgresql-migration" = callPackage + ({ mkDerivation, base, base64-bytestring, bytestring, cryptohash + , directory, filepath, hspec, postgresql-simple, text, time + }: + mkDerivation { + pname = "postgresql-migration"; + version = "0.2.1.2"; + sha256 = "168da2n2ky17mygrxnh9z95nwscw2b769xhykmg9d398mnz9a188"; + revision = "1"; + editedCabalFile = "09vzsig1jm9n6i6h7ybqlg3ffmgzyg7cpjlwaha9p7w70afjvmgh"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base base64-bytestring bytestring cryptohash directory filepath + postgresql-simple text time + ]; + executableHaskellDepends = [ + base base64-bytestring bytestring cryptohash directory + postgresql-simple text time + ]; + testHaskellDepends = [ base bytestring hspec postgresql-simple ]; + description = "PostgreSQL Schema Migrations"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; + }) {}; + "postgresql-named" = callPackage ({ mkDerivation, base, bytestring, extra, generics-sop, hspec, mtl , postgresql-libpq, postgresql-simple, utf8-string @@ -212492,8 +212679,8 @@ self: { }: mkDerivation { pname = "postgresql-replicant"; - version = "0.2.0.0"; - sha256 = "06r5psp6zv2pdbn4l5mp9mh8gywx4s75rny21qbbizramvl77h1k"; + version = "0.2.0.1"; + sha256 = "02qvi404sc8wqapqynppxinwgv0f531ssnl6x8g6wkswzg9rdvvx"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -213309,8 +213496,8 @@ self: { }: mkDerivation { pname = "powerdns"; - version = "0.1"; - sha256 = "1fg698m3qmm5f0g0fl394hx593pwg7ai730imwahv00fr846lqm1"; + version = "0.1.1"; + sha256 = "1pyh9whqzx7fkvr3090paiz1x29fkfkrgs1v3k4d0x3vfdxv6n1f"; libraryHaskellDepends = [ aeson base base64-bytestring bytestring case-insensitive containers deepseq servant servant-client servant-client-core text time @@ -213994,17 +214181,6 @@ self: { }) {}; "prelude-safeenum" = callPackage - ({ mkDerivation, base }: - mkDerivation { - pname = "prelude-safeenum"; - version = "0.1.1.2"; - sha256 = "09wp6b7bvnp2wz0kigwm4vfca74phh3bbpqybqdgm60isfaz3yfl"; - libraryHaskellDepends = [ base ]; - description = "A redefinition of the Prelude's Enum class in order to render it safe"; - license = lib.licenses.bsd3; - }) {}; - - "prelude-safeenum_0_1_1_3" = callPackage ({ mkDerivation, base }: mkDerivation { pname = "prelude-safeenum"; @@ -214013,7 +214189,6 @@ self: { libraryHaskellDepends = [ base ]; description = "A redefinition of the Prelude's Enum class in order to render it safe"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "prelude2010" = callPackage @@ -214834,18 +215009,21 @@ self: { "primitive" = callPackage ({ mkDerivation, base, base-orphans, deepseq, ghc-prim, QuickCheck - , quickcheck-classes-base, tagged, tasty, tasty-quickcheck - , transformers, transformers-compat + , quickcheck-classes-base, tagged, tasty, tasty-bench + , tasty-quickcheck, transformers, transformers-compat }: mkDerivation { pname = "primitive"; - version = "0.7.2.0"; - sha256 = "1facmq2wxhn5mbgd209zz5swyaw1q970fv3hd84klaxrhabqaxwi"; + version = "0.7.3.0"; + sha256 = "1p01fmw8yi578rvwicrlpbfkbfsv7fbnzb88a7vggrhygykgs31w"; libraryHaskellDepends = [ base deepseq transformers ]; testHaskellDepends = [ base base-orphans ghc-prim QuickCheck quickcheck-classes-base tagged tasty tasty-quickcheck transformers transformers-compat ]; + benchmarkHaskellDepends = [ + base deepseq tasty-bench transformers + ]; description = "Primitive memory-related operations"; license = lib.licenses.bsd3; }) {}; @@ -215052,10 +215230,8 @@ self: { }: mkDerivation { pname = "primitive-sort"; - version = "0.1.0.0"; - sha256 = "147y4y8v00yggfgyf70kzd3pd9r6jvgxkzjsy3xpbp6mjdnzrbm3"; - revision = "4"; - editedCabalFile = "167p2a9bc64vfrmxnwr0zh7ddcm41rxchckygxkya46kcrgn07v3"; + version = "0.1.1.0"; + sha256 = "0ixx8cvjzsl93lr6pxppyiv12rgwaxh5xv4m56f6b81cxqdx97f2"; libraryHaskellDepends = [ base contiguous ghc-prim primitive ]; testHaskellDepends = [ base containers doctest HUnit primitive QuickCheck smallcheck tasty @@ -216342,20 +216518,20 @@ self: { "prolude" = callPackage ({ mkDerivation, aeson, amazonka, base, bytestring, cassava - , containers, generic-random, lens, mongoDB, mtl, network-uri - , persistent, persistent-mongoDB, QuickCheck, quickcheck-instances - , safe-exceptions, scientific, servant, swagger2, text, time, uuid - , vector + , containers, esqueleto, generic-random, lens, mongoDB, mtl + , network-uri, persistent, persistent-mongoDB, QuickCheck + , quickcheck-instances, safe-exceptions, scientific, servant, stm + , swagger2, text, time, uuid, vector, witch }: mkDerivation { pname = "prolude"; - version = "0.0.0.18"; - sha256 = "0pjw02zr3gvwfq8raibqq4dwmnkf8ybqdg1jv74q9gjgqi5y08pp"; + version = "0.0.0.23"; + sha256 = "0r26l12xi89njln29b2zzf5kdfd1vkhpi64andbgm6xmcb7rphid"; libraryHaskellDepends = [ - aeson amazonka base bytestring cassava containers generic-random - lens mongoDB mtl network-uri persistent persistent-mongoDB - QuickCheck quickcheck-instances safe-exceptions scientific servant - swagger2 text time uuid vector + aeson amazonka base bytestring cassava containers esqueleto + generic-random lens mongoDB mtl network-uri persistent + persistent-mongoDB QuickCheck quickcheck-instances safe-exceptions + scientific servant stm swagger2 text time uuid vector witch ]; description = "ITProTV's custom prelude"; license = lib.licenses.mit; @@ -217531,6 +217707,7 @@ self: { description = "Language support for the PureScript programming language"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "pseudo-boolean" = callPackage @@ -218176,25 +218353,29 @@ self: { "pure-zlib" = callPackage ({ mkDerivation, array, base, base-compat, bytestring - , bytestring-builder, containers, criterion, filepath, HUnit - , QuickCheck, tasty, tasty-hunit, tasty-quickcheck, time + , bytestring-builder, containers, criterion, filepath, ghc-prim + , HUnit, primitive, QuickCheck, tasty, tasty-hunit + , tasty-quickcheck, time, vector, zlib }: mkDerivation { pname = "pure-zlib"; - version = "0.6.8"; - sha256 = "10rlgzq6p93irnhlh8hzj040xbf8gn8swszbkrmaln0b2kk1mncb"; + version = "0.8.0"; + sha256 = "0hfi0jhn7gxzxvn94fbhfbih7qyak55qrdbbkllfx9vhji21pc6w"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ array base base-compat bytestring bytestring-builder containers + primitive vector + ]; + executableHaskellDepends = [ + base base-compat bytestring ghc-prim ]; - executableHaskellDepends = [ base base-compat bytestring ]; testHaskellDepends = [ base base-compat bytestring filepath HUnit QuickCheck tasty tasty-hunit tasty-quickcheck ]; benchmarkHaskellDepends = [ - base base-compat bytestring criterion time + base base-compat bytestring criterion time zlib ]; description = "A Haskell-only implementation of zlib / DEFLATE"; license = lib.licenses.bsd3; @@ -218203,26 +218384,6 @@ self: { }) {}; "pureMD5" = callPackage - ({ mkDerivation, base, binary, bytestring, cereal, crypto-api - , crypto-api-tests, pretty-hex, QuickCheck, tagged, test-framework - , test-framework-quickcheck2 - }: - mkDerivation { - pname = "pureMD5"; - version = "2.1.3"; - sha256 = "0zdilz41cla2ck7mcw1a9702gyg2abq94mqahr4vci9sbs53bwxy"; - libraryHaskellDepends = [ - base binary bytestring cereal crypto-api tagged - ]; - testHaskellDepends = [ - base binary bytestring cereal crypto-api-tests pretty-hex - QuickCheck test-framework test-framework-quickcheck2 - ]; - description = "A Haskell-only implementation of the MD5 digest (hash) algorithm"; - license = lib.licenses.bsd3; - }) {}; - - "pureMD5_2_1_4" = callPackage ({ mkDerivation, base, binary, bytestring, cereal, crypto-api , crypto-api-tests, pretty-hex, QuickCheck, tagged, test-framework , test-framework-quickcheck2 @@ -218240,36 +218401,56 @@ self: { ]; description = "A Haskell-only implementation of the MD5 digest (hash) algorithm"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "purebred-email" = callPackage ({ mkDerivation, attoparsec, base, base64-bytestring, bytestring , case-insensitive, concise, deepseq, hedgehog, lens, QuickCheck - , quickcheck-instances, semigroupoids, semigroups, stringsearch - , tasty, tasty-golden, tasty-hedgehog, tasty-hunit + , quickcheck-instances, random, semigroupoids, semigroups + , stringsearch, tasty, tasty-golden, tasty-hedgehog, tasty-hunit , tasty-quickcheck, text, time }: mkDerivation { pname = "purebred-email"; - version = "0.4.3"; - sha256 = "00jl1n200nfn8iaqqdpa9h77b14r0fd6amsh46h16ad4ky3p2nkj"; + version = "0.5"; + sha256 = "0ibnykfqs438fhpwcq0yqkdnr67rql7ss07fcr5qckr4zxaw8ba1"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ attoparsec base base64-bytestring bytestring case-insensitive - concise deepseq lens semigroupoids semigroups stringsearch text - time + concise deepseq lens random semigroupoids semigroups stringsearch + text time ]; testHaskellDepends = [ attoparsec base bytestring case-insensitive hedgehog lens - QuickCheck quickcheck-instances semigroups tasty tasty-golden - tasty-hedgehog tasty-hunit tasty-quickcheck text time + QuickCheck quickcheck-instances random semigroups tasty + tasty-golden tasty-hedgehog tasty-hunit tasty-quickcheck text time ]; description = "types and parser for email messages (including MIME)"; license = lib.licenses.agpl3Plus; }) {}; + "purenix" = callPackage + ({ mkDerivation, aeson, base, bytestring, containers, directory + , filepath, microlens-platform, mtl, pretty-simple, purescript + , purescript-cst, text + }: + mkDerivation { + pname = "purenix"; + version = "1.0"; + sha256 = "0h6g8x9c0k2hy8jyfafdhg7lq4s5r7zfhi542mkzjqpzf7cqrxwn"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson base bytestring containers directory filepath + microlens-platform mtl pretty-simple purescript purescript-cst text + ]; + executableHaskellDepends = [ base ]; + description = "Nix backend for PureScript. Transpile PureScript code to Nix."; + license = lib.licenses.bsd3; + maintainers = with lib.maintainers; [ cdepillabout ]; + }) {}; + "purescheme-wai-routing-core" = callPackage ({ mkDerivation, aeson, base, bytestring, case-insensitive , http-media, http-types, interpolate, text, wai, warp @@ -218311,8 +218492,8 @@ self: { }: mkDerivation { pname = "purescript"; - version = "0.14.4"; - sha256 = "0qda90yycv2yyjdpfqvmsnxbyxpx55b53cfp9rgnbhbrskr0w2vk"; + version = "0.14.5"; + sha256 = "06f318hdah076vkviw1ryyg2p0gpbabsp8lbm5x03f2qv92n9j1n"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -218361,7 +218542,6 @@ self: { doCheck = false; description = "PureScript Programming Language Compiler"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "purescript-ast" = callPackage @@ -218435,8 +218615,6 @@ self: { libraryToolDepends = [ happy ]; description = "PureScript Programming Language Concrete Syntax Tree"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "purescript-iso" = callPackage @@ -218490,6 +218668,7 @@ self: { description = "TypeScript Declaration File (.d.ts) generator for PureScript"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "pursuit-client" = callPackage @@ -218675,8 +218854,8 @@ self: { }: mkDerivation { pname = "pusher-http-haskell"; - version = "2.1.0.3"; - sha256 = "1v9mibzvj5qfx9b5wgg9ragqd54xqmxb20afnmnw5c5yiglzazxd"; + version = "2.1.0.5"; + sha256 = "1nwnwli1pr2f2q77awy4b2ilph0y2hpi4wvv4wj4ha80lpniba55"; libraryHaskellDepends = [ aeson base base16-bytestring bytestring cryptonite hashable http-client http-client-tls http-types memory text time @@ -218689,28 +218868,6 @@ self: { license = lib.licenses.mit; }) {}; - "pusher-http-haskell_2_1_0_4" = callPackage - ({ mkDerivation, aeson, base, base16-bytestring, bytestring - , cryptonite, hashable, hspec, http-client, http-client-tls - , http-types, memory, QuickCheck, text, time, unordered-containers - }: - mkDerivation { - pname = "pusher-http-haskell"; - version = "2.1.0.4"; - sha256 = "0mqjxx1jb8kvzhnnpfs0r1zkjlb6n0pwqdr6idjsn3w7yxlf5ldw"; - libraryHaskellDepends = [ - aeson base base16-bytestring bytestring cryptonite hashable - http-client http-client-tls http-types memory text time - unordered-containers - ]; - testHaskellDepends = [ - aeson base bytestring hspec QuickCheck text unordered-containers - ]; - description = "Haskell client library for the Pusher Channels HTTP API"; - license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - }) {}; - "pusher-ws" = callPackage ({ mkDerivation, aeson, base, bytestring, containers, deepseq , hashable, http-conduit, lens, lens-aeson, network, scientific @@ -220111,6 +220268,32 @@ self: { license = lib.licenses.bsd3; }) {}; + "quickcheck-instances_0_3_26_1" = callPackage + ({ mkDerivation, array, base, bytestring, case-insensitive + , containers, data-fix, hashable, integer-logarithms, old-time + , OneTuple, QuickCheck, scientific, splitmix, strict, tagged, text + , text-short, these, time, time-compat, transformers + , transformers-compat, unordered-containers, uuid-types, vector + }: + mkDerivation { + pname = "quickcheck-instances"; + version = "0.3.26.1"; + sha256 = "0zgsz1sisw3zlxlc5ssir6q4sm1qcvzwkmw50plrna04i0xj8bv4"; + libraryHaskellDepends = [ + array base bytestring case-insensitive containers data-fix hashable + integer-logarithms old-time OneTuple QuickCheck scientific splitmix + strict tagged text text-short these time time-compat transformers + transformers-compat unordered-containers uuid-types vector + ]; + testHaskellDepends = [ + base containers QuickCheck tagged uuid-types + ]; + benchmarkHaskellDepends = [ base bytestring QuickCheck ]; + description = "Common quickcheck instances"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "quickcheck-io" = callPackage ({ mkDerivation, base, HUnit, QuickCheck }: mkDerivation { @@ -221071,8 +221254,8 @@ self: { }: mkDerivation { pname = "r-glpk-phonetic-languages-ukrainian-durations"; - version = "0.3.0.0"; - sha256 = "0x4i2qj1zq9r2641bwrx2x18c61ziddf8p10hfgz6hr449h6w5v3"; + version = "0.4.0.0"; + sha256 = "0rw9scbxhk5v61b7d4hwvwv4jxkkglsnzphslwashalhcfxc39p7"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -222204,6 +222387,8 @@ self: { pname = "rank2classes"; version = "1.4.3"; sha256 = "03sla9gsg23ma8xxm3mndc9wrh715lsgksxc34rxkmjbp9vxlccj"; + revision = "1"; + editedCabalFile = "1607wkp0d9a9igyngc5hip6mcsx8lm6v70facnggz0lnv7vqm5l8"; setupHaskellDepends = [ base Cabal cabal-doctest ]; libraryHaskellDepends = [ base distributive template-haskell transformers @@ -222516,24 +222701,6 @@ self: { }) {}; "ratel" = callPackage - ({ mkDerivation, aeson, base, bytestring, case-insensitive - , containers, filepath, hspec, http-client, http-client-tls - , http-types, text, uuid - }: - mkDerivation { - pname = "ratel"; - version = "1.0.15"; - sha256 = "14g39xsfm60iywcddi7glxvk4b92vd7nk7yd5zhvjhxi3zqz50i2"; - libraryHaskellDepends = [ - aeson base bytestring case-insensitive containers http-client - http-client-tls http-types text uuid - ]; - testHaskellDepends = [ base filepath hspec ]; - description = "Notify Honeybadger about exceptions"; - license = lib.licenses.mit; - }) {}; - - "ratel_1_0_16" = callPackage ({ mkDerivation, aeson, base, bytestring, case-insensitive , containers, filepath, hspec, http-client, http-client-tls , http-types, text, uuid @@ -222549,7 +222716,6 @@ self: { testHaskellDepends = [ base filepath hspec ]; description = "Notify Honeybadger about exceptions"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "ratel-wai" = callPackage @@ -223297,8 +223463,8 @@ self: { }: mkDerivation { pname = "reactive-banana-automation"; - version = "0.5.4"; - sha256 = "1ir2m6d13hg8i4w4vfpnvjv6dvnjmrz2bwl7n6lsac95pm0hbjs3"; + version = "0.5.5"; + sha256 = "13vpmyn68ad1g9885aj6dvgyn07f5blr91k4c3gf77ymlwj1a1zn"; libraryHaskellDepends = [ base reactive-banana stm time transformers ]; @@ -223703,6 +223869,28 @@ self: { license = "GPL"; }) {inherit (pkgs) ncurses; inherit (pkgs) readline;}; + "readline-in-other-words" = callPackage + ({ mkDerivation, base, haskeline, in-other-words + , in-other-words-plugin, monad-control, mtl + }: + mkDerivation { + pname = "readline-in-other-words"; + version = "0.1.0.0"; + sha256 = "180arjxnwz6gp4ccjk7kjhyhmic4hgcbcc8klrl79c9vqjjp6hnq"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base haskeline in-other-words in-other-words-plugin monad-control + mtl + ]; + executableHaskellDepends = [ + base haskeline in-other-words in-other-words-plugin monad-control + mtl + ]; + description = "Readline effect for in-other-words"; + license = lib.licenses.bsd2; + }) {}; + "readline-statevar" = callPackage ({ mkDerivation, base, readline, StateVar }: mkDerivation { @@ -224035,6 +224223,24 @@ self: { license = lib.licenses.bsd3; }) {}; + "record-dot-preprocessor_0_2_13" = callPackage + ({ mkDerivation, base, extra, filepath, ghc, record-hasfield + , uniplate + }: + mkDerivation { + pname = "record-dot-preprocessor"; + version = "0.2.13"; + sha256 = "0kqk8iiqhpqrr0b0bxcy0vqp159cnsf9zri45hbp4npqm2lvcw37"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ base extra ghc uniplate ]; + executableHaskellDepends = [ base extra ]; + testHaskellDepends = [ base extra filepath record-hasfield ]; + description = "Preprocessor to allow record.field syntax"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "record-encode" = callPackage ({ mkDerivation, base, doctest, generics-sop, hspec, QuickCheck , vector @@ -224243,8 +224449,8 @@ self: { }: mkDerivation { pname = "recursion-schemes"; - version = "5.2.2.1"; - sha256 = "1nq23ybrbkcgd9rsva4bsvzxl78987qfy0qmxxlvlq2mvs2jkqxy"; + version = "5.2.2.2"; + sha256 = "018l7j9pk8izi817vqyrakrkjsxr332jh24d6j0yl35i5wm4khv6"; libraryHaskellDepends = [ base base-orphans comonad containers data-fix free template-haskell th-abstraction transformers @@ -224595,18 +224801,15 @@ self: { "reducers" = callPackage ({ mkDerivation, array, base, bytestring, containers, fingertree - , hashable, semigroupoids, semigroups, text, transformers - , unordered-containers + , hashable, semigroupoids, text, transformers, unordered-containers }: mkDerivation { pname = "reducers"; - version = "3.12.3"; - sha256 = "09wf8pl9ycglcv6qj5ba26gkg2s5iy81hsx9xp0q8na0cwvp71ki"; - revision = "2"; - editedCabalFile = "1kd38n9h2hxl09khvkvkhnflgm6rbky1zkw3iazlpb8xk9zkk39s"; + version = "3.12.4"; + sha256 = "0hsycdir52jdijnnvc77jj971fjrrc722v952wr62ivrvx2zarn0"; libraryHaskellDepends = [ array base bytestring containers fingertree hashable semigroupoids - semigroups text transformers unordered-containers + text transformers unordered-containers ]; description = "Semigroups, specialized containers and a general map/reduce framework"; license = lib.licenses.bsd3; @@ -224919,15 +225122,15 @@ self: { }: mkDerivation { pname = "reflex"; - version = "0.8.1.1"; - sha256 = "0fxvlvh6k2h7p76nhjbjl6jqs4iqixq5p93fywn6jj37g00lxnhy"; + version = "0.8.2.0"; + sha256 = "1hvagxcs413bqairxf77vp19484mxnbfckhd44wv22ncwfh5mq6d"; libraryHaskellDepends = [ - base bifunctors comonad constraints-extras containers data-default - dependent-map dependent-sum exception-transformers haskell-src-exts - haskell-src-meta lens MemoTrie mmorph monad-control - monoidal-containers mtl patch prim-uniq primitive profunctors - random ref-tf reflection semialign semigroupoids stm syb - template-haskell these time transformers unbounded-delays + base bifunctors comonad constraints constraints-extras containers + data-default dependent-map dependent-sum exception-transformers + haskell-src-exts haskell-src-meta lens MemoTrie mmorph + monad-control monoidal-containers mtl patch prim-uniq primitive + profunctors random ref-tf reflection semialign semigroupoids stm + syb template-haskell these time transformers unbounded-delays witherable ]; testHaskellDepends = [ @@ -226863,8 +227066,8 @@ self: { }: mkDerivation { pname = "rel8"; - version = "1.1.0.0"; - sha256 = "1p67r6l89hnl54sgqxsy5w66cx4xxwcxkidm9n1fbc2gzkd4dzbm"; + version = "1.2.0.0"; + sha256 = "0nslc1hsgvv9j5lyf4zi6b3jkakfkv49j9pjan141j1cb0cbpgwa"; libraryHaskellDepends = [ aeson base bifunctors bytestring case-insensitive comonad contravariant hasql opaleye pretty product-profunctors profunctors @@ -228203,24 +228406,22 @@ self: { "req-oauth2" = callPackage ({ mkDerivation, aeson, base, base64-bytestring, bytestring , data-default-class, hspec, http-client, http-types, lens - , modern-uri, req, req-url-extra, text, transformers + , modern-uri, req, text, transformers }: mkDerivation { pname = "req-oauth2"; - version = "0.1.0.0"; - sha256 = "1qx5f4flyainc0m87fjyn6z65bfh10y6bh6vbbqmyy4m4aw47wia"; + version = "0.1.0.1"; + sha256 = "0nn1044b5rlvvfyvbf3j9pwbrqq16vh2pmgwp0kcanpxda8abal6"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ aeson base base64-bytestring bytestring data-default-class - http-client http-types lens modern-uri req req-url-extra text - transformers + http-client http-types lens modern-uri req text transformers ]; executableHaskellDepends = [ base ]; testHaskellDepends = [ base hspec ]; description = "Provides OAuth2 authentication for use with Req"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "req-url-extra" = callPackage @@ -228851,6 +229052,34 @@ self: { hydraPlatforms = lib.platforms.none; }) {}; + "rest-rewrite" = callPackage + ({ mkDerivation, base, containers, hashable, monad-loops, mtl + , parsec, process, QuickCheck, text, time, unordered-containers + }: + mkDerivation { + pname = "rest-rewrite"; + version = "0.1.1"; + sha256 = "0absln2c3ia5bj473wr6lahms9x9xj6szk9lgpb9382px038wxrn"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base containers hashable mtl parsec process text + unordered-containers + ]; + executableHaskellDepends = [ + base containers hashable monad-loops mtl parsec process QuickCheck + text time unordered-containers + ]; + testHaskellDepends = [ + base containers hashable mtl parsec process QuickCheck text + unordered-containers + ]; + description = "Rewriting library with online termination checking"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; + }) {}; + "rest-snap" = callPackage ({ mkDerivation, base, base-compat, bytestring, case-insensitive , rest-core, safe, snap-core, unordered-containers, uri-encode @@ -230507,8 +230736,8 @@ self: { pname = "rle"; version = "0.1.0.1"; sha256 = "05rbhm0lxrq7vdbq9s0q21m0f0hlzmknljmampcmdjnwbl4nvf3d"; - revision = "1"; - editedCabalFile = "0077n1z80x3psgcgvbs7cxln63m2ghb4iiqih0r5aq96j4v9x3f0"; + revision = "2"; + editedCabalFile = "1qrc7d5h9ikvk0mxk0q03x7iwbax11vw97416qqknl7m6azi915v"; libraryHaskellDepends = [ base cereal deepseq portray portray-diff wrapped ]; @@ -231842,6 +232071,39 @@ self: { license = lib.licenses.bsd3; }) {}; + "rp-tree_0_7_1" = callPackage + ({ mkDerivation, base, benchpress, boxes, bytestring, conduit + , containers, deepseq, heaps, hspec, mtl, QuickCheck, serialise + , splitmix, splitmix-distributions, text, transformers, vector + , vector-algorithms + }: + mkDerivation { + pname = "rp-tree"; + version = "0.7.1"; + sha256 = "01iy2awnwqgfqyigpggj6gfig930lx655bih1a2hd5ga2fbrymmp"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base boxes bytestring conduit containers deepseq heaps mtl + serialise splitmix splitmix-distributions text transformers vector + vector-algorithms + ]; + executableHaskellDepends = [ + base conduit containers splitmix splitmix-distributions + transformers vector + ]; + testHaskellDepends = [ + base conduit hspec QuickCheck splitmix-distributions vector + ]; + benchmarkHaskellDepends = [ + base benchpress conduit deepseq splitmix splitmix-distributions + transformers vector + ]; + description = "Random projection trees"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "rpc" = callPackage ({ mkDerivation, base, bytestring, cereal, containers, derive , network-fancy, template-haskell, th-lift @@ -231915,14 +232177,14 @@ self: { }) {}; "rpm-nvr" = callPackage - ({ mkDerivation, base, extra, hspec }: + ({ mkDerivation, base, extra, filepath, hspec }: mkDerivation { pname = "rpm-nvr"; - version = "0.1.0"; - sha256 = "11w40vw18wbxhd0lbjh75a1bc4sqwh9xqv2iaa6kd8cd6c7ij26x"; - libraryHaskellDepends = [ base extra ]; - testHaskellDepends = [ base hspec ]; - description = "RPM package name-version-release datatypes"; + version = "0.1.1"; + sha256 = "1lv1siz93bjgbyqfsl8c0f9j7scx2fj5dvim9mhanw7madsk6ijs"; + libraryHaskellDepends = [ base extra filepath ]; + testHaskellDepends = [ base filepath hspec ]; + description = "RPM package name-version-release data types"; license = lib.licenses.gpl2Only; }) {}; @@ -234198,6 +234460,24 @@ self: { hydraPlatforms = lib.platforms.none; }) {}; + "satyros" = callPackage + ({ mkDerivation, base, containers, extra, free, lens, mtl, random + , vector + }: + mkDerivation { + pname = "satyros"; + version = "0.2.0.0"; + sha256 = "12mk86a46i5k4ng8r3f7s3ccs2p9kz345v3b8p8hrmmcgksimkds"; + libraryHaskellDepends = [ + base containers extra free lens mtl random vector + ]; + testHaskellDepends = [ + base containers extra free lens mtl random vector + ]; + description = "Step-by-step SAT solver for educational purposes"; + license = lib.licenses.mit; + }) {}; + "savage" = callPackage ({ mkDerivation, base, bytestring, containers, exceptions, mmorph , monad-control, mtl, primitive, random, resourcet, text, time @@ -234295,6 +234575,34 @@ self: { license = lib.licenses.lgpl3Only; }) {}; + "sbp_4_0_3" = callPackage + ({ mkDerivation, aeson, aeson-pretty, array, base + , base64-bytestring, basic-prelude, binary, binary-conduit + , bytestring, cmdargs, conduit, conduit-extra, data-binary-ieee754 + , lens, lens-aeson, monad-loops, resourcet, tasty, tasty-hunit + , template-haskell, text, time, yaml + }: + mkDerivation { + pname = "sbp"; + version = "4.0.3"; + sha256 = "1pcrpykf6wzpkrgxi08niwadvdk5rab3ddcba28j84d3agzv7192"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson array base base64-bytestring basic-prelude binary bytestring + data-binary-ieee754 lens lens-aeson monad-loops template-haskell + text + ]; + executableHaskellDepends = [ + aeson aeson-pretty base basic-prelude binary-conduit bytestring + cmdargs conduit conduit-extra lens resourcet time yaml + ]; + testHaskellDepends = [ base basic-prelude tasty tasty-hunit ]; + description = "SwiftNav's SBP Library"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {}; + "sbp2udp" = callPackage ({ mkDerivation, base, basic-prelude, binary, binary-conduit , bytestring, conduit, conduit-extra, network, optparse-generic @@ -234382,7 +234690,7 @@ self: { ]; }) {inherit (pkgs) z3;}; - "sbv_8_16" = callPackage + "sbv_8_17" = callPackage ({ mkDerivation, array, async, base, bench-show, bytestring , containers, deepseq, directory, doctest, filepath, gauge, Glob , hlint, libBF, mtl, pretty, process, QuickCheck, random, silently @@ -234391,8 +234699,8 @@ self: { }: mkDerivation { pname = "sbv"; - version = "8.16"; - sha256 = "1jmcc9qz659my5i3ir6lq34zfbjp9wcnq61fppic1hlwm39qjppd"; + version = "8.17"; + sha256 = "0l9dwydrjipgq3cbv0g6y820mi7lf5lcn3hidl6a60zzdrkfyxhd"; enableSeparateDataOutput = true; libraryHaskellDepends = [ array async base containers deepseq directory filepath libBF mtl @@ -235251,6 +235559,8 @@ self: { pname = "scientific"; version = "0.3.7.0"; sha256 = "1aa3ngb71l2sh1x2829napnr1w285q0sn2f7z2wvi3ynng2238d3"; + revision = "1"; + editedCabalFile = "0wydsjgrl28wx3rv9iq6vcva50r9s8ss8g2hkp6bkrr0nggv9vfp"; libraryHaskellDepends = [ base binary bytestring containers deepseq hashable integer-gmp integer-logarithms primitive template-haskell text @@ -236381,12 +236691,12 @@ self: { }) {}; "sdp" = callPackage - ({ mkDerivation, base, data-default-class, ghc-prim }: + ({ mkDerivation, base, data-default-class, fmr, ghc-prim }: mkDerivation { pname = "sdp"; - version = "0.2.0.1"; - sha256 = "1l7bvwqxwn3c8cafbxbkm66cahdpas29h8vgkkkp0rd3y18bvbb5"; - libraryHaskellDepends = [ base data-default-class ghc-prim ]; + version = "0.2.1"; + sha256 = "1hz6b1fr47dwi3pml627f280ac6j8yp2hmjm1kvlzicsk0hj12hf"; + libraryHaskellDepends = [ base data-default-class fmr ghc-prim ]; description = "Simple Data Processing"; license = lib.licenses.bsd3; }) {}; @@ -237319,17 +237629,15 @@ self: { license = lib.licenses.bsd3; }) {}; - "semialign_1_2" = callPackage + "semialign_1_2_0_1" = callPackage ({ mkDerivation, base, containers, hashable, indexed-traversable , indexed-traversable-instances, semigroupoids, tagged, these , transformers, unordered-containers, vector }: mkDerivation { pname = "semialign"; - version = "1.2"; - sha256 = "04dcyj69g7bm1sydxk89vin9mh2pmm0pqf0cm9v981i98xp6xxdj"; - revision = "1"; - editedCabalFile = "0s5s5k0xngb3wgnzyiwsqqnpy8c6nma4rn9146zk17shzsjy7ryk"; + version = "1.2.0.1"; + sha256 = "0ci1jpp37p1lzyjxc1bljd6zgg407qmkl9s36b50qjxf85q6j06r"; libraryHaskellDepends = [ base containers hashable indexed-traversable indexed-traversable-instances semigroupoids tagged these @@ -237448,27 +237756,6 @@ self: { }) {}; "semigroupoids" = callPackage - ({ mkDerivation, base, base-orphans, bifunctors, comonad - , containers, contravariant, distributive, hashable, tagged - , template-haskell, transformers, transformers-compat - , unordered-containers - }: - mkDerivation { - pname = "semigroupoids"; - version = "5.3.5"; - sha256 = "1c66sc9w9724xhlly9wfjhghmnnw99z9al69264i2izk7vhihbsm"; - revision = "1"; - editedCabalFile = "13ssan43xr6yk465axy35m87jrxy3rmrsbzxah055jmsldjp5bg9"; - libraryHaskellDepends = [ - base base-orphans bifunctors comonad containers contravariant - distributive hashable tagged template-haskell transformers - transformers-compat unordered-containers - ]; - description = "Semigroupoids: Category sans id"; - license = lib.licenses.bsd3; - }) {}; - - "semigroupoids_5_3_6" = callPackage ({ mkDerivation, base, base-orphans, bifunctors, comonad , containers, contravariant, distributive, hashable, tagged , template-haskell, transformers, transformers-compat @@ -237487,7 +237774,6 @@ self: { ]; description = "Semigroupoids: Category sans id"; license = lib.licenses.bsd2; - hydraPlatforms = lib.platforms.none; }) {}; "semigroupoids-do" = callPackage @@ -237531,6 +237817,8 @@ self: { pname = "semigroups"; version = "0.19.2"; sha256 = "0h1sl3i6k8csy5zkkpy65rxzds9wg577z83aaakybr3n1gcv4855"; + revision = "2"; + editedCabalFile = "0pprwlsipdsshr2h83bk0xjkhq2bw88m9fn44fiyas3habg25ajf"; libraryHaskellDepends = [ base ]; description = "Anything that associates"; license = lib.licenses.bsd3; @@ -238191,19 +238479,17 @@ self: { ({ mkDerivation, aeson, array, base, binary, bytestring, cborg , cereal, cereal-vector, containers, criterion, deepseq, directory , fail, filepath, ghc-prim, half, hashable, pretty, primitive - , QuickCheck, quickcheck-instances, semigroups, store, tar, tasty - , tasty-hunit, tasty-quickcheck, text, time, unordered-containers - , vector, zlib + , QuickCheck, quickcheck-instances, semigroups, store, strict, tar + , tasty, tasty-hunit, tasty-quickcheck, text, these, time + , unordered-containers, vector, zlib }: mkDerivation { pname = "serialise"; - version = "0.2.3.0"; - sha256 = "0vp4wyxpximpx10pssfgdsir1pc23zb62fg3kj3iblpzqfrryy69"; - revision = "2"; - editedCabalFile = "1qcsp15v0swxy2qlvc40fil09zq32y3wl00y3passc2a4b4yhmr4"; + version = "0.2.4.0"; + sha256 = "07i50rza58x8j7kw9w2mhbks41gjv6xgnlgfdb0hw2cwdmkrmjqd"; libraryHaskellDepends = [ array base bytestring cborg containers ghc-prim half hashable - primitive text time unordered-containers vector + primitive strict text these time unordered-containers vector ]; testHaskellDepends = [ base bytestring cborg containers directory filepath primitive @@ -240418,8 +240704,8 @@ self: { }: mkDerivation { pname = "servant-serf"; - version = "0.2.0"; - sha256 = "1dda569calcwy0xa0avxzx55r4iydwz49wnc015rjj81kp1ij02y"; + version = "0.2.1"; + sha256 = "1xbjjf243ml2mavvizp6a7llw9c43mnncp7yk0ksjqcnchvsx43w"; isLibrary = true; isExecutable = true; executableHaskellDepends = [ @@ -240783,10 +241069,8 @@ self: { }: mkDerivation { pname = "servant-swagger-ui"; - version = "0.3.5.3.47.1"; - sha256 = "00bmkj87rnd9zmg54h3z8k9zgs5d17lcdn9gp006xixa6g494cms"; - revision = "1"; - editedCabalFile = "1dn93dhr8qaxr3raz5myrps1bkhlr6bha8q3kwhyj4q7ahdvj4nj"; + version = "0.3.5.3.52.5"; + sha256 = "1m7scy7fm19zk6xq5mb9l12ajdhm0ml9zl60rqr2m86x4q2i6gq0"; libraryHaskellDepends = [ aeson base bytestring file-embed-lzma servant servant-server servant-swagger-ui-core text @@ -241665,6 +241949,8 @@ self: { pname = "setlocale"; version = "1.0.0.10"; sha256 = "19rv89jkhq5ic7j5rzpygnmsbzim2mn8ip0m292za613q88gywir"; + revision = "1"; + editedCabalFile = "10hfdkd2by18a1yhn7ayfl2zhl4xfv244l3kjsryb0rcnw67bs8i"; libraryHaskellDepends = [ base ]; description = "Haskell bindings to setlocale"; license = lib.licenses.bsd3; @@ -241807,35 +242093,6 @@ self: { }) {}; "sexp-grammar" = callPackage - ({ mkDerivation, alex, array, base, bytestring, containers - , criterion, data-fix, deepseq, happy, invertible-grammar - , prettyprinter, QuickCheck, recursion-schemes, scientific - , semigroups, tasty, tasty-hunit, tasty-quickcheck, text - , utf8-string - }: - mkDerivation { - pname = "sexp-grammar"; - version = "2.3.3"; - sha256 = "0mil91bqzx5lrd7pl1in35ir7zwa6h8lmm9wvqifk7y241hg99gg"; - libraryHaskellDepends = [ - array base bytestring containers data-fix deepseq - invertible-grammar prettyprinter recursion-schemes scientific - semigroups text utf8-string - ]; - libraryToolDepends = [ alex happy ]; - testHaskellDepends = [ - base containers invertible-grammar prettyprinter QuickCheck - scientific semigroups tasty tasty-hunit tasty-quickcheck text - utf8-string - ]; - benchmarkHaskellDepends = [ - base bytestring criterion deepseq text - ]; - description = "Invertible grammar combinators for S-expressions"; - license = lib.licenses.bsd3; - }) {}; - - "sexp-grammar_2_3_3_1" = callPackage ({ mkDerivation, alex, array, base, bytestring, containers , criterion, data-fix, deepseq, happy, invertible-grammar , prettyprinter, QuickCheck, recursion-schemes, scientific @@ -241862,7 +242119,6 @@ self: { ]; description = "Invertible grammar combinators for S-expressions"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "sexp-show" = callPackage @@ -243504,8 +243760,8 @@ self: { pname = "short-vec"; version = "0.1.0.0"; sha256 = "0w651jipwxh7k4ng5rvq507br4347hzy8x8c47c1g7haryj80gzq"; - revision = "4"; - editedCabalFile = "1rwzaxdpkrn1v7p8jph4m91vyphdzm9h2yppnmanp636p0sjxzf4"; + revision = "6"; + editedCabalFile = "13bi12zgv810vn5grqm6agw2v8sk9m0c5hivk34pv0sjiwhlk4m1"; libraryHaskellDepends = [ adjunctions base data-default-class deepseq distributive fin-int indexed-traversable integer-gmp portray portray-diff QuickCheck @@ -243536,8 +243792,8 @@ self: { pname = "short-vec-lens"; version = "0.1.0.0"; sha256 = "1afz1izz19xrjy0cdhmpy7b667waa5v8jh1ps3jpjfpgbmysjz3g"; - revision = "1"; - editedCabalFile = "1bkvx7csgqdn16kamih5h797pcg3ppcf6gln7lf01bw9pd5hpkkb"; + revision = "2"; + editedCabalFile = "18ic2kvvcyl9y69kg0jjlyqnw9xyj205clp2qfbl3k0sjlqb9va5"; libraryHaskellDepends = [ base fin-int indexed-traversable lens short-vec sint ]; @@ -243548,20 +243804,20 @@ self: { "shortbytestring" = callPackage ({ mkDerivation, base, bytestring, deepseq, exceptions, ghc-prim - , primitive, random, tasty, tasty-bench, tasty-quickcheck - , template-haskell, text, word16, word8 + , primitive, QuickCheck, random, tasty, tasty-bench + , tasty-quickcheck, template-haskell, text, word16, word8 }: mkDerivation { pname = "shortbytestring"; - version = "0.1.0.0"; - sha256 = "1wjk73xlrk0qgnn8j53ngnikh034v295mm7w9nqadvwg9y3absfy"; + version = "0.2.0.0"; + sha256 = "1mwr0nf0jd8j0yd2lzvlaav44g5kil7yh3yazvdqc35bf52chc6s"; libraryHaskellDepends = [ base bytestring exceptions primitive template-haskell text word16 word8 ]; testHaskellDepends = [ - base bytestring deepseq ghc-prim tasty tasty-quickcheck word16 - word8 + base bytestring deepseq ghc-prim QuickCheck tasty tasty-quickcheck + word16 word8 ]; benchmarkHaskellDepends = [ base bytestring deepseq random tasty-bench @@ -244288,6 +244544,28 @@ self: { maintainers = with lib.maintainers; [ turion ]; }) {}; + "simple-amount" = callPackage + ({ mkDerivation, aeson, base, data-default, gmp, hedgehog, HUnit + , lens, mpfr, pretty, pretty-show, profunctors, split, tasty + , tasty-hedgehog, tasty-hunit, text, time, transformers + }: + mkDerivation { + pname = "simple-amount"; + version = "0.2.0"; + sha256 = "1vcms57piz1abvsbsc67m1yzlnkkffz4bgrdg1yqxja7azncpizf"; + libraryHaskellDepends = [ + aeson base data-default lens pretty pretty-show profunctors split + text time transformers + ]; + librarySystemDepends = [ gmp mpfr ]; + testHaskellDepends = [ + aeson base data-default hedgehog HUnit lens pretty pretty-show + profunctors split tasty tasty-hedgehog tasty-hunit text time + transformers + ]; + license = lib.licenses.bsd3; + }) {inherit (pkgs) gmp; inherit (pkgs) mpfr;}; + "simple-atom" = callPackage ({ mkDerivation, base, containers, deepseq }: mkDerivation { @@ -245146,6 +245424,8 @@ self: { pname = "simpleargs"; version = "0.2.1"; sha256 = "1grjjpb3397wnr6sd0bn679k9pfg1zlm61350zd2gj5yq6pshl6p"; + revision = "1"; + editedCabalFile = "09l7ry6ygw8yixzwl9z8r19bn8nkzvilpi75kklfn0lcmskj8nax"; enableSeparateDataOutput = true; libraryHaskellDepends = [ base ]; description = "Provides a more flexible getArgs function with better error reporting"; @@ -245557,6 +245837,8 @@ self: { pname = "singleton-nats"; version = "0.4.6"; sha256 = "1drjwwkpszgifhnd7p4qqz92z85nh7w81w1hpdqv9a6vc5hfbv7r"; + revision = "1"; + editedCabalFile = "0xgm43p5l9m80anc8qfxr9vdni3iphnkn8d3x3q6nqz7gjq5hypj"; libraryHaskellDepends = [ base singletons singletons-base ]; description = "Unary natural numbers relying on the singletons infrastructure"; license = lib.licenses.bsd3; @@ -245601,12 +245883,12 @@ self: { license = lib.licenses.bsd3; }) {}; - "singletons_3_0" = callPackage + "singletons_3_0_1" = callPackage ({ mkDerivation, base }: mkDerivation { pname = "singletons"; - version = "3.0"; - sha256 = "1zrnmdv00i9lyrqvbvljx24lvi49p11m5gbvh1xc2ygnhgb6xmx5"; + version = "3.0.1"; + sha256 = "0lqg9wxh02z2sikpy88asm8g4sfrvyb66b7p76irsij31h0cxbnk"; libraryHaskellDepends = [ base ]; testHaskellDepends = [ base ]; description = "Basic singleton types and definitions"; @@ -245621,8 +245903,8 @@ self: { }: mkDerivation { pname = "singletons-base"; - version = "3.0"; - sha256 = "0syrh4f9rs4g643c90md1vqrpr6p8h8g8sh4x3j2dld12yvrw4wn"; + version = "3.1"; + sha256 = "1bsfbdbfwiq2nis3r95x06r0q9iypyz4hkvmgvk56bwj6421k7kd"; setupHaskellDepends = [ base Cabal directory filepath ]; libraryHaskellDepends = [ base pretty singletons singletons-th template-haskell text @@ -245660,8 +245942,8 @@ self: { }: mkDerivation { pname = "singletons-th"; - version = "3.0"; - sha256 = "1c0w7sg0lbpizrzns4g55wxsk5jm8wlqw0w9rz4jzqwy15byb572"; + version = "3.1"; + sha256 = "1mhx7sadw7zxaf7qhryrhi4fiyf9v3jcaplkh1syaa7b4725dm7a"; libraryHaskellDepends = [ base containers ghc-boot-th mtl singletons syb template-haskell th-desugar th-orphans transformers @@ -245726,16 +246008,16 @@ self: { }: mkDerivation { pname = "sint"; - version = "0.1.0.0"; - sha256 = "1gqd5m5r3i9qvszzb1ljjip5c7bnsp5nblmghg4lhbpfrs7r87gf"; + version = "0.2.0"; + sha256 = "108za6vamb75kd6s2m0iin1gk6b1azk11jzsj841r7j62rhjn1qx"; revision = "1"; - editedCabalFile = "0z0bm4hj5w0xpasvdlczabd6my5ms1xfzyg1yg9fwc5llbi2z34p"; + editedCabalFile = "1pwb61jzmpwgg2a1lz30a1445hhasff73qy18jc765ahgimp1r50"; libraryHaskellDepends = [ base portray portray-diff ]; testHaskellDepends = [ base portray portray-diff QuickCheck test-framework test-framework-quickcheck2 ]; - description = "A singleton type for `Nat` represented as `Int`"; + description = "Nat singletons represented by Int"; license = lib.licenses.asl20; }) {}; @@ -245768,10 +246050,8 @@ self: { }: mkDerivation { pname = "siphon"; - version = "0.8.1.1"; - sha256 = "1l8asyjbhhzj0zccf86g0scm2h8hp42c3v3wyymcvfwmd2wspnfr"; - revision = "1"; - editedCabalFile = "0xdl110lvjq23vd7p6q0fc68yspk72m5ixs90yc8j2g7fi52izsx"; + version = "0.8.1.2"; + sha256 = "0iwk0na10jpkrnx1mq1pv5657grnlf3k1ahbfkykkk8m8xhzi0zp"; libraryHaskellDepends = [ attoparsec base bytestring colonnade semigroups streaming text transformers vector @@ -246292,14 +246572,14 @@ self: { license = lib.licenses.gpl2Only; }) {}; - "skylighting_0_12" = callPackage + "skylighting_0_12_1" = callPackage ({ mkDerivation, base, binary, blaze-html, bytestring, containers , pretty-show, skylighting-core, text }: mkDerivation { pname = "skylighting"; - version = "0.12"; - sha256 = "1hd3ryv9g5cp0l9jrdmav7vkhx5hqdx830bx0xixfikqzigdsg3y"; + version = "0.12.1"; + sha256 = "0aaxw2b6lwdnabm5p7nj7xv39lscypvzyivnsjrxham5qvgsvnn8"; configureFlags = [ "-fexecutable" ]; isLibrary = true; isExecutable = true; @@ -246345,7 +246625,7 @@ self: { license = lib.licenses.bsd3; }) {}; - "skylighting-core_0_12" = callPackage + "skylighting-core_0_12_1" = callPackage ({ mkDerivation, aeson, ansi-terminal, attoparsec, base , base64-bytestring, binary, blaze-html, bytestring , case-insensitive, colour, containers, criterion, Diff, directory @@ -246355,8 +246635,8 @@ self: { }: mkDerivation { pname = "skylighting-core"; - version = "0.12"; - sha256 = "15ph640qrx4l31h8wa80yivgvsabm92clkk2fba4zr032dxg7d0f"; + version = "0.12.1"; + sha256 = "0lyiax1smgv729109h3yhbpm0l6r7rwrfmp2df2ypmh3k6s88rhf"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -247028,6 +247308,8 @@ self: { pname = "smallcheck"; version = "1.2.1"; sha256 = "0sf87zjlrgjw7q6a0499g2ywx66zvpv6rg6953fjc18fnl8rs7z4"; + revision = "1"; + editedCabalFile = "141lvb58hy94gywchaaf2dbh1dncnj951q5l6xkg1drvm94dvj1b"; libraryHaskellDepends = [ base logict mtl pretty ]; description = "A property-based testing library"; license = lib.licenses.bsd3; @@ -249425,10 +249707,10 @@ self: { ({ mkDerivation, base, numeric-kinds }: mkDerivation { pname = "snumber"; - version = "0.1.0.0"; - sha256 = "0f340hzhhmiy342c5250m61f3gkcnfymjbd2a13alzdh7pmhb2mg"; + version = "0.2.0"; + sha256 = "0q1xswnh1rymnyi3jpn4fn6fwj36haamwri7ifd4f7jm2a9v1isx"; revision = "1"; - editedCabalFile = "0cc7chg4qhqlrkdv2m7y514gs9lm1hixwaw543dv47vqb12063im"; + editedCabalFile = "1ai6syqkwa0rl23f23hv6wkqg274lrdsh6jqyy9xiklcl8j3bz5w"; libraryHaskellDepends = [ base numeric-kinds ]; description = "Integer singletons with flexible representation"; license = lib.licenses.asl20; @@ -249923,6 +250205,23 @@ self: { license = lib.licenses.mit; }) {}; + "som" = callPackage + ({ mkDerivation, base, containers, deepseq, grid, QuickCheck + , random, test-framework, test-framework-quickcheck2 + }: + mkDerivation { + pname = "som"; + version = "10.1.11"; + sha256 = "1fslhbi5gxdjx199g4vaygq57nimhrc4dhqf8nk8nv4b2pwd97nr"; + libraryHaskellDepends = [ base containers deepseq grid ]; + testHaskellDepends = [ + base containers deepseq grid QuickCheck random test-framework + test-framework-quickcheck2 + ]; + description = "Self-Organising Maps"; + license = lib.licenses.bsd3; + }) {}; + "some" = callPackage ({ mkDerivation, base, deepseq }: mkDerivation { @@ -249941,6 +250240,8 @@ self: { pname = "some"; version = "1.0.3"; sha256 = "0w3syapwz9v916zf1i4f8vxymdfg7syc2cpxgnqr018pbswzxrk2"; + revision = "1"; + editedCabalFile = "14nsajf1n3ba58ljhbk3hk2nr61s896grbi07jvg68dvg7h5rln5"; libraryHaskellDepends = [ base deepseq ]; testHaskellDepends = [ base ]; description = "Existential type: Some"; @@ -251428,24 +251729,25 @@ self: { ({ mkDerivation, async, base, base-compat, base-compat-batteries , bytestring, clock, containers, criterion, deepseq, HUnit , math-functions, process, random, test-framework - , test-framework-hunit, tf-random, vector + , test-framework-hunit, testu01, tf-random, vector }: mkDerivation { pname = "splitmix"; - version = "0.1.0.3"; - sha256 = "0das5n44dhlcv5i233iakx37d17kidqvhrvp6w9nd7hc015ry026"; + version = "0.1.0.4"; + sha256 = "1apck3nzzl58r0b9al7cwaqwjhhkl8q4bfrx14br2yjf741581kd"; libraryHaskellDepends = [ base deepseq ]; testHaskellDepends = [ async base base-compat base-compat-batteries bytestring containers deepseq HUnit math-functions process random test-framework test-framework-hunit tf-random vector ]; + testSystemDepends = [ testu01 ]; benchmarkHaskellDepends = [ base clock containers criterion random tf-random ]; description = "Fast Splittable PRNG"; license = lib.licenses.bsd3; - }) {}; + }) {testu01 = null;}; "splitmix-distributions" = callPackage ({ mkDerivation, base, containers, erf, exceptions, hspec, mtl @@ -252067,6 +252369,76 @@ self: { broken = true; }) {}; + "squeal-postgresql_0_8_1_1" = callPackage + ({ mkDerivation, aeson, async, base, binary, binary-parser + , bytestring, bytestring-strict-builder, deepseq, doctest + , exceptions, free-categories, gauge, generic-random, generics-sop + , hedgehog, hspec, mmorph, monad-control, monad-loops, mtl + , network-ip, postgresql-binary, postgresql-libpq, profunctors + , QuickCheck, quickcheck-instances, records-sop, resource-pool + , scientific, text, time, transformers, transformers-base, unliftio + , uuid-types, vector, with-utf8 + }: + mkDerivation { + pname = "squeal-postgresql"; + version = "0.8.1.1"; + sha256 = "13q7kfx6wyznqcjl9pxl07p1f2fh6kqmbgvnfa383q1gnhw8zxb9"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson base binary binary-parser bytestring + bytestring-strict-builder deepseq exceptions free-categories + generics-sop mmorph monad-control mtl network-ip postgresql-binary + postgresql-libpq profunctors records-sop resource-pool scientific + text time transformers transformers-base unliftio uuid-types vector + ]; + executableHaskellDepends = [ + base bytestring generics-sop mtl text transformers vector + ]; + testHaskellDepends = [ + async base bytestring doctest generics-sop hedgehog hspec mtl + scientific text time vector with-utf8 + ]; + benchmarkHaskellDepends = [ + base bytestring deepseq gauge generic-random generics-sop + monad-loops mtl QuickCheck quickcheck-instances scientific text + with-utf8 + ]; + description = "Squeal PostgreSQL Library"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; + }) {}; + + "squeal-postgresql-ltree" = callPackage + ({ mkDerivation, base, bytestring, generics-sop, mtl + , postgresql-binary, postgresql-libpq, squeal-postgresql, text + }: + mkDerivation { + pname = "squeal-postgresql-ltree"; + version = "0.1.0.0"; + sha256 = "184y3ar72icxbnqasqvma0ri7s1qczmfsangcvqjjwjf3kpnbb87"; + libraryHaskellDepends = [ + base bytestring generics-sop mtl postgresql-binary postgresql-libpq + squeal-postgresql text + ]; + description = "LTree extension for Squeal"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + + "squeal-postgresql-uuid-ossp" = callPackage + ({ mkDerivation, base, squeal-postgresql }: + mkDerivation { + pname = "squeal-postgresql-uuid-ossp"; + version = "0.1.0.0"; + sha256 = "0b2z4rz3r3dikqa6w8rsi36gw6wvvj7b8rmh2drpp6lykykm8n2s"; + libraryHaskellDepends = [ base squeal-postgresql ]; + description = "UUID OSSP extension for Squeal"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "squeather" = callPackage ({ mkDerivation, base, bytestring, directory, filepath, hedgehog , lifted-base, temporary, text @@ -254721,20 +255093,6 @@ self: { }) {}; "stm-chans" = callPackage - ({ mkDerivation, base, Cabal, stm }: - mkDerivation { - pname = "stm-chans"; - version = "3.0.0.4"; - sha256 = "0f27sp09yha43xk9q55sc185jyjs5h7gq2dhsyx6bm9kz9dzqi13"; - revision = "1"; - editedCabalFile = "0v9axxcfszqdmf3dhjxy34ybh22x3r5c48mdnbvjh5i5lp7g7vp2"; - setupHaskellDepends = [ base Cabal ]; - libraryHaskellDepends = [ base stm ]; - description = "Additional types of channels for STM"; - license = lib.licenses.bsd3; - }) {}; - - "stm-chans_3_0_0_6" = callPackage ({ mkDerivation, base, stm }: mkDerivation { pname = "stm-chans"; @@ -254743,7 +255101,6 @@ self: { libraryHaskellDepends = [ base stm ]; description = "Additional types of channels for STM"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "stm-chunked-queues" = callPackage @@ -256608,8 +256965,8 @@ self: { pname = "strict"; version = "0.4.0.1"; sha256 = "0hb24a09c3agsq7sdv8r2b2jc2f4g1blg2xvj4cfadynib0apxnz"; - revision = "1"; - editedCabalFile = "04js9aj6h49gr8plrgqm7jall0baw5wjkvqjxbpmi8ji0xspw62h"; + revision = "2"; + editedCabalFile = "1zrimwpr4ilvivkdf4yfryic354pbj34cf6kvvh7vjb6mw31j15b"; libraryHaskellDepends = [ assoc base binary bytestring deepseq ghc-prim hashable text these transformers @@ -257542,8 +257899,8 @@ self: { }: mkDerivation { pname = "strive"; - version = "5.0.14"; - sha256 = "0a9hnrl7ww92ki1z4qa8m2smxlc0gq2a856w706ayzzfkma5dxil"; + version = "5.0.16"; + sha256 = "1y3msxm71g71mj940gdd1sqkndrk857ywp9j685csaxhiprmrzz1"; libraryHaskellDepends = [ aeson base bytestring data-default gpolyline http-client http-client-tls http-types template-haskell text time transformers @@ -257552,32 +257909,14 @@ self: { license = lib.licenses.mit; }) {}; - "strive_5_0_15" = callPackage - ({ mkDerivation, aeson, base, bytestring, data-default, gpolyline - , http-client, http-client-tls, http-types, template-haskell, text - , time, transformers - }: - mkDerivation { - pname = "strive"; - version = "5.0.15"; - sha256 = "1v1m9wdb1kd2pyib6sima4zb0hlwp8hax3mlik3m3ixjbiwfp4ii"; - libraryHaskellDepends = [ - aeson base bytestring data-default gpolyline http-client - http-client-tls http-types template-haskell text time transformers - ]; - description = "A client for the Strava V3 API"; - license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - }) {}; - "strong-path" = callPackage ({ mkDerivation, base, exceptions, filepath, hspec, path, tasty , tasty-discover, tasty-hspec, tasty-quickcheck, template-haskell }: mkDerivation { pname = "strong-path"; - version = "1.0.1.1"; - sha256 = "0jxn7ixqgz70csjw6f73v7j8pdwaj51qxy59hl62f6763bf4z392"; + version = "1.1.1.0"; + sha256 = "1jqz927n21q44i8021x8r1swppn6n6dy0z4zv0509jc7s6vf34vi"; libraryHaskellDepends = [ base exceptions filepath path template-haskell ]; @@ -257691,25 +258030,6 @@ self: { }) {}; "structured" = callPackage - ({ mkDerivation, aeson, array, base, base16-bytestring, binary - , bytestring, containers, hashable, scientific, tagged, text - , time-compat, transformers, unordered-containers, uuid-types - , vector - }: - mkDerivation { - pname = "structured"; - version = "0.1.0.1"; - sha256 = "1ai760kzx0y901zwimsgiwbms88cyhg9mblhpqr0813dxqy31d5f"; - libraryHaskellDepends = [ - aeson array base base16-bytestring binary bytestring containers - hashable scientific tagged text time-compat transformers - unordered-containers uuid-types vector - ]; - description = "Structure (hash) of your data types"; - license = lib.licenses.bsd3; - }) {}; - - "structured_0_1_1" = callPackage ({ mkDerivation, aeson, array, base, base16-bytestring, binary , bytestring, containers, hashable, scientific, tagged, text , time-compat, transformers, unordered-containers, uuid-types @@ -257726,7 +258046,6 @@ self: { ]; description = "Structure (hash) of your data types"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "structured-cli" = callPackage @@ -259443,31 +259762,6 @@ self: { }) {}; "swish" = callPackage - ({ mkDerivation, base, containers, directory, filepath, hashable - , HUnit, intern, mtl, network-uri, old-locale, polyparse - , semigroups, test-framework, test-framework-hunit, text, time - }: - mkDerivation { - pname = "swish"; - version = "0.10.0.5"; - sha256 = "0cf3aba585hnlaamwfxy9mfp8mjanza0zgp27gi2y66f79hcpq2q"; - isLibrary = true; - isExecutable = true; - enableSeparateDataOutput = true; - libraryHaskellDepends = [ - base containers directory filepath hashable intern mtl network-uri - old-locale polyparse text time - ]; - executableHaskellDepends = [ base ]; - testHaskellDepends = [ - base containers hashable HUnit network-uri old-locale semigroups - test-framework test-framework-hunit text time - ]; - description = "A semantic web toolkit"; - license = lib.licenses.lgpl21Only; - }) {}; - - "swish_0_10_0_7" = callPackage ({ mkDerivation, base, containers, directory, filepath, hashable , HUnit, intern, mtl, network-uri, old-locale, polyparse , semigroups, test-framework, test-framework-hunit, text, time @@ -259490,7 +259784,6 @@ self: { ]; description = "A semantic web toolkit"; license = lib.licenses.lgpl21Only; - hydraPlatforms = lib.platforms.none; }) {}; "swiss-ephemeris" = callPackage @@ -260215,8 +260508,8 @@ self: { }: mkDerivation { pname = "symantic-base"; - version = "0.2.0.20210831"; - sha256 = "1vvhshqv0pcnyrdmpk7fpz39lic666ck5hcqpw429fyqmv92k4kh"; + version = "0.3.0.20211007"; + sha256 = "1ia79d3ih3yr6fpm85hvn42jpq0d41qvm96v58b2rsxlivrnibsq"; libraryHaskellDepends = [ base containers hashable template-haskell transformers unordered-containers @@ -263048,12 +263341,12 @@ self: { license = lib.licenses.mit; }) {}; - "tasty-bench_0_3" = callPackage + "tasty-bench_0_3_1" = callPackage ({ mkDerivation, base, containers, deepseq, tasty }: mkDerivation { pname = "tasty-bench"; - version = "0.3"; - sha256 = "06c7n1dslxr1m15m8kf35zfn544jm36vk8s3yfrf6h047gd1bs2k"; + version = "0.3.1"; + sha256 = "1gbqknfh7xc4hb2g58rjh66ibpwp4i38pizkzknx4n366d2292hy"; libraryHaskellDepends = [ base containers deepseq tasty ]; description = "Featherlight benchmark framework"; license = lib.licenses.mit; @@ -263078,8 +263371,6 @@ self: { ]; description = "Check multiple items during a tasty test"; license = lib.licenses.isc; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "tasty-dejafu" = callPackage @@ -263273,6 +263564,20 @@ self: { broken = true; }) {}; + "tasty-hslua" = callPackage + ({ mkDerivation, base, bytestring, hslua-core, tasty, tasty-hunit + }: + mkDerivation { + pname = "tasty-hslua"; + version = "1.0.0"; + sha256 = "07il3h282lj7m9y7cgc2w0gbffzndibwgxqfdv5m2n4kf1c3finl"; + libraryHaskellDepends = [ + base bytestring hslua-core tasty tasty-hunit + ]; + description = "Tasty helpers to test HsLua"; + license = lib.licenses.mit; + }) {}; + "tasty-hspec" = callPackage ({ mkDerivation, base, hspec, hspec-core, QuickCheck, tasty , tasty-quickcheck, tasty-smallcheck @@ -263525,6 +263830,26 @@ self: { license = lib.licenses.mit; }) {}; + "tasty-lua_1_0_0" = callPackage + ({ mkDerivation, base, bytestring, directory, file-embed, filepath + , hslua-core, hslua-marshalling, tasty, tasty-hunit, text + }: + mkDerivation { + pname = "tasty-lua"; + version = "1.0.0"; + sha256 = "1ykl3by81ivz59zy3cqd6xsa4g8g7axwr9hajdbvmwn1b5y4h880"; + libraryHaskellDepends = [ + base bytestring file-embed hslua-core hslua-marshalling tasty text + ]; + testHaskellDepends = [ + base directory filepath hslua-core hslua-marshalling tasty + tasty-hunit + ]; + description = "Write tests in Lua, integrate into tasty"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {}; + "tasty-mgolden" = callPackage ({ mkDerivation, ansi-terminal, base, Diff, filepath, hlint, tasty , tasty-expected-failure, tasty-hunit, text, typed-process @@ -264350,6 +264675,24 @@ self: { license = lib.licenses.bsd3; }) {}; + "telega" = callPackage + ({ mkDerivation, aeson, base, data-default, http-client, joint + , lens, req, text, unordered-containers + }: + mkDerivation { + pname = "telega"; + version = "0.3.0"; + sha256 = "1i19vn0i89p1p007bj0yfdywd9q2n3pd5gx39r7rcn13rzr40alq"; + libraryHaskellDepends = [ + aeson base data-default http-client joint lens req text + unordered-containers + ]; + description = "Telegram Bot API binding"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; + }) {}; + "telegram" = callPackage ({ mkDerivation, aeson, base, bytestring, data-default , http-conduit, url, utf8-string @@ -264658,12 +265001,12 @@ self: { broken = true; }) {}; - "template-haskell_2_17_0_0" = callPackage + "template-haskell_2_18_0_0" = callPackage ({ mkDerivation, base, ghc-boot-th, ghc-prim, pretty }: mkDerivation { pname = "template-haskell"; - version = "2.17.0.0"; - sha256 = "0m9siwzxh11ny75sgcnfha8h1vcsc1mbn0jvqsal9sbskwss7bab"; + version = "2.18.0.0"; + sha256 = "0mcb7psdkyx9ddwkny0ymvadrsy2dnj82d6jdm23c63zv99z3g1r"; libraryHaskellDepends = [ base ghc-boot-th ghc-prim pretty ]; description = "Support library for Template Haskell"; license = lib.licenses.bsd3; @@ -264674,8 +265017,8 @@ self: { ({ mkDerivation, base, template-haskell }: mkDerivation { pname = "template-haskell-compat-v0208"; - version = "0.1.6"; - sha256 = "1s2ba86y2r9n4r1dwfg734y3nfqxak560s8srd04kbn623hnrkw8"; + version = "0.1.7"; + sha256 = "1bqnshyf8n9xaybi5wjrj9akp9lxfyfd9zc8jv81m5bllbmxbp2z"; libraryHaskellDepends = [ base template-haskell ]; description = "A backwards compatibility layer for Template Haskell newer than 2.8"; license = lib.licenses.mit; @@ -265019,8 +265362,8 @@ self: { pname = "ten"; version = "0.1.0.2"; sha256 = "0djvcb2l9dnnjbhivchi6yyaj5i96jmy7yhr9x3paiz1l54brrqx"; - revision = "1"; - editedCabalFile = "1dcr49q8g3wr1glhlawvg4bbz3mykvwnx7z9pw1ssvk9w7839z6r"; + revision = "2"; + editedCabalFile = "1ps9l5v5gg0bj2mxwplhi267p94wk5jdcpsv3g106aczw16l5nwz"; libraryHaskellDepends = [ adjunctions base data-default-class deepseq distributive hashable portray portray-diff some text transformers wrapped @@ -265040,6 +265383,8 @@ self: { pname = "ten-lens"; version = "0.1.0.1"; sha256 = "0qckywzj1c1k8la2ya1vpgrpl9fnqhggx6m6ad0rgrhyal48522c"; + revision = "1"; + editedCabalFile = "1hb0kgp80nbj5smxxsg9iw12r3lpci1z4ddwiv2cznw3qkkl4qa3"; libraryHaskellDepends = [ base lens profunctors some ten ]; description = "Lenses for the types in the ten package"; license = lib.licenses.asl20; @@ -265053,10 +265398,8 @@ self: { }: mkDerivation { pname = "ten-unordered-containers"; - version = "0.1.0.2"; - sha256 = "0y4aw77ix2ay43l8n17322hbmm1npcdr1bl7kdza377jd1ci20px"; - revision = "1"; - editedCabalFile = "196gjc39c0x4p444byh7mwnhf9ci7dxhmxl602ha52fr554cdh0j"; + version = "0.1.0.3"; + sha256 = "1kfww8xs5m802jcx309pp6lx9f7pn1hsbqq3mln4g9rcf0r24mwy"; libraryHaskellDepends = [ base hashable portray portray-diff some ten unordered-containers wrapped @@ -265750,8 +266093,8 @@ self: { pname = "test-framework"; version = "0.8.2.0"; sha256 = "1hhacrzam6b8f10hyldmjw8pb7frdxh04rfg3farxcxwbnhwgbpm"; - revision = "6"; - editedCabalFile = "0wbq9wiaag69nsqxwijzhs5y1hb9kbpkp1x65dvx158cxp8i9w9r"; + revision = "7"; + editedCabalFile = "0an5fypqx6r9v3ql5n9xwdxnaq922lpwh759z5y6vx8rasnd98jw"; libraryHaskellDepends = [ ansi-terminal ansi-wl-pprint base containers hostname old-locale random regex-posix time xml @@ -266077,27 +266420,29 @@ self: { }) {}; "test-sandbox" = callPackage - ({ mkDerivation, base, bytestring, cereal, containers, data-default - , directory, filepath, hastache, heredoc, hspec + ({ mkDerivation, aeson, base, bytestring, cereal, containers + , data-default, directory, filepath, heredoc, hspec , hspec-expectations-lifted, lifted-base, monad-control - , monad-loops, mtl, network, process, QuickCheck, random - , random-shuffle, regex-posix, template-haskell, temporary, text + , monad-loops, mtl, network, network-bsd, network-run, process + , QuickCheck, random, random-shuffle, regex-posix, stache + , string-conversions, template-haskell, temporary, text , transformers, transformers-base, transformers-compat, unix }: mkDerivation { pname = "test-sandbox"; - version = "0.1.7"; - sha256 = "0myrz0zs1i1360cb9dzffybakglm96kb9zjk6m8rdkdwklm94a8c"; + version = "0.1.9"; + sha256 = "1k2w3hs8b4slj43h66qpzblnffd3d4xprh701xmh15dznrm6258i"; libraryHaskellDepends = [ base bytestring cereal containers data-default directory filepath - lifted-base monad-control monad-loops mtl network process random - random-shuffle regex-posix temporary transformers transformers-base - transformers-compat unix + lifted-base monad-control monad-loops mtl network network-bsd + process random random-shuffle regex-posix temporary transformers + transformers-base transformers-compat unix ]; testHaskellDepends = [ - base containers directory hastache heredoc hspec - hspec-expectations-lifted mtl process QuickCheck regex-posix - template-haskell text transformers transformers-compat unix + aeson base containers directory heredoc hspec + hspec-expectations-lifted mtl network network-run process + QuickCheck regex-posix stache string-conversions template-haskell + text transformers transformers-compat unix ]; description = "Sandbox for system tests"; license = lib.licenses.bsd3; @@ -266141,8 +266486,8 @@ self: { ({ mkDerivation, base, HUnit, lifted-base, test-sandbox }: mkDerivation { pname = "test-sandbox-hunit"; - version = "0.1.2"; - sha256 = "0v8nfgjn46q4z5ic5vlqm240dfkk0ci90n86bb3b7nk3hvka1zpk"; + version = "0.1.3"; + sha256 = "0jsdfpliv36vpbcw7s8vwycy58yj6srq11yw4d7bnz6vsjfhdgh3"; libraryHaskellDepends = [ base HUnit lifted-base test-sandbox ]; description = "HUnit convenience functions for use with test-sandbox"; license = lib.licenses.bsd3; @@ -266454,8 +266799,8 @@ self: { }: mkDerivation { pname = "texmath"; - version = "0.12.3.1"; - sha256 = "1qyiihb9h7w7074p495yd4s8dj9adz0dy865gyp822z69jvmkcki"; + version = "0.12.3.2"; + sha256 = "1d9r3na7hmkgr0j63fs50ssll506l1wyqhw0dpap7jk0rdz8pv6n"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -266576,10 +266921,8 @@ self: { }: mkDerivation { pname = "text-ascii"; - version = "1.0.1"; - sha256 = "0clibcn3g72hxjhcsnb7ziw35ald5zqkql5b8mf9lpjpx94hii65"; - revision = "1"; - editedCabalFile = "0qc1in7i9i22hyd440g3bra74ryz26z8c2bcxdbr91hfjzj4n3g3"; + version = "1.1"; + sha256 = "0i9fmb41sc05nz1jjfz33cbqqy894xaw604dnb4fb7248xbnmc3c"; libraryHaskellDepends = [ base bytestring case-insensitive deepseq hashable megaparsec optics-core optics-extra template-haskell text @@ -266679,6 +267022,24 @@ self: { license = lib.licenses.bsd3; }) {}; + "text-display" = callPackage + ({ mkDerivation, base, bytestring, hspec, should-not-typecheck + , text + }: + mkDerivation { + pname = "text-display"; + version = "0.0.1.0"; + sha256 = "0ljh2pxwk6nl37z6az83wh50lvh5mr0gwxjc1vwnwva62yg3f0nx"; + libraryHaskellDepends = [ base bytestring text ]; + testHaskellDepends = [ + base bytestring hspec should-not-typecheck text + ]; + description = "A typeclass for user-facing output"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; + }) {}; + "text-format" = callPackage ({ mkDerivation, array, base, double-conversion, ghc-prim , integer-gmp, old-locale, text, time, transformers @@ -267185,6 +267546,8 @@ self: { pname = "text-short"; version = "0.1.4"; sha256 = "1p56cjm6f883ajb54y8hmrl01sqda6a36xvbmgjv3mb9gxv953v4"; + revision = "1"; + editedCabalFile = "049fahl19pxbsqjrfvfm0ll3mclgin7pw04350k1sfdgigkpcyjg"; libraryHaskellDepends = [ base binary bytestring deepseq ghc-prim hashable template-haskell text @@ -267228,6 +267591,37 @@ self: { license = lib.licenses.bsd3; }) {}; + "text-show_3_9_3" = callPackage + ({ mkDerivation, array, base, base-compat-batteries, base-orphans + , bifunctors, bytestring, bytestring-builder, containers, criterion + , deepseq, deriving-compat, generic-deriving, ghc-boot-th, ghc-prim + , hspec, hspec-discover, integer-gmp, QuickCheck + , quickcheck-instances, template-haskell, text, th-abstraction + , th-lift, transformers, transformers-compat + }: + mkDerivation { + pname = "text-show"; + version = "3.9.3"; + sha256 = "0vn1qp1knwa2vr5v75bims0lqyi073d98axibbv2mr3cp3348xhn"; + libraryHaskellDepends = [ + array base base-compat-batteries bifunctors bytestring + bytestring-builder containers generic-deriving ghc-boot-th ghc-prim + integer-gmp template-haskell text th-abstraction th-lift + transformers transformers-compat + ]; + testHaskellDepends = [ + array base base-compat-batteries base-orphans bytestring + bytestring-builder deriving-compat generic-deriving ghc-prim hspec + QuickCheck quickcheck-instances template-haskell text transformers + transformers-compat + ]; + testToolDepends = [ hspec-discover ]; + benchmarkHaskellDepends = [ base criterion deepseq ghc-prim text ]; + description = "Efficient conversion of values into Text"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "text-show-instances" = callPackage ({ mkDerivation, base, base-compat-batteries, bifunctors, binary , containers, directory, generic-deriving, ghc-boot-th, ghc-prim @@ -267263,6 +267657,40 @@ self: { license = lib.licenses.bsd3; }) {}; + "text-show-instances_3_8_5" = callPackage + ({ mkDerivation, base, base-compat-batteries, bifunctors, binary + , containers, directory, generic-deriving, ghc-boot-th, ghc-prim + , haskeline, hpc, hspec, hspec-discover, old-locale, old-time + , pretty, QuickCheck, quickcheck-instances, random, semigroups + , tagged, template-haskell, terminfo, text, text-short, text-show + , th-orphans, time, transformers, transformers-compat, unix + , unordered-containers, vector, xhtml + }: + mkDerivation { + pname = "text-show-instances"; + version = "3.8.5"; + sha256 = "1qpkap6p57js8x4b3hm0xnk3xbyv8w1g6w84qda49dv6x67chyn3"; + libraryHaskellDepends = [ + base base-compat-batteries bifunctors binary containers directory + ghc-boot-th haskeline hpc old-locale old-time pretty random + semigroups tagged template-haskell terminfo text text-short + text-show time transformers transformers-compat unix + unordered-containers vector xhtml + ]; + testHaskellDepends = [ + base base-compat-batteries bifunctors binary containers directory + generic-deriving ghc-boot-th ghc-prim haskeline hpc hspec + old-locale old-time pretty QuickCheck quickcheck-instances random + tagged template-haskell terminfo text-short text-show th-orphans + time transformers transformers-compat unix unordered-containers + vector xhtml + ]; + testToolDepends = [ hspec-discover ]; + description = "Additional instances for text-show"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "text-stream-decode" = callPackage ({ mkDerivation, base, bytestring, criterion, deepseq, hspec, text }: @@ -267313,6 +267741,7 @@ self: { description = "An efficient finite map from Text to values, based on bytestring-trie"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "text-utf7" = callPackage @@ -267764,15 +268193,15 @@ self: { license = lib.licenses.bsd3; }) {}; - "th-desugar_1_12" = callPackage + "th-desugar_1_13" = callPackage ({ mkDerivation, base, containers, ghc-prim, hspec, HUnit, mtl , ordered-containers, syb, template-haskell, th-abstraction , th-lift, th-orphans, transformers-compat }: mkDerivation { pname = "th-desugar"; - version = "1.12"; - sha256 = "1bp47jpif299kbm27zhjaw1nhl12daa09vsc8f0jracq0jhxi3iv"; + version = "1.13"; + sha256 = "03jmvlgb7h7dn5dvlb0ryy7zjvdmyp5280cbkyrvfpjw0g5c9k24"; libraryHaskellDepends = [ base containers ghc-prim mtl ordered-containers syb template-haskell th-abstraction th-lift th-orphans @@ -267813,6 +268242,21 @@ self: { license = lib.licenses.bsd3; }) {}; + "th-env_0_1_0_3" = callPackage + ({ mkDerivation, base, markdown-unlit, template-haskell, th-compat + }: + mkDerivation { + pname = "th-env"; + version = "0.1.0.3"; + sha256 = "1ksw93npbgr74jy4jhfl4qvbzh4qxy5zvspmfhy1apkl793rs8c1"; + libraryHaskellDepends = [ base template-haskell th-compat ]; + testHaskellDepends = [ base markdown-unlit ]; + testToolDepends = [ markdown-unlit ]; + description = "Template Haskell splice that expands to an environment variable"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "th-expand-syns" = callPackage ({ mkDerivation, base, containers, syb, template-haskell , th-abstraction @@ -268422,8 +268866,8 @@ self: { pname = "these"; version = "1.1.1.1"; sha256 = "027m1gd7i6jf2ppfkld9qrv3xnxg276587pmx10z9phpdvswk66p"; - revision = "2"; - editedCabalFile = "16x3am622jn97j1d9879x7j5zbjn33bkfaa0dq0xyp1fbc0s7h5x"; + revision = "4"; + editedCabalFile = "0pbj0ac11imj70xqpfxm968zanyjxcm9phh96l3qpmjs1sqqrsrd"; libraryHaskellDepends = [ assoc base binary deepseq hashable ]; description = "An either-or-both data type"; license = lib.licenses.bsd3; @@ -268825,8 +269269,8 @@ self: { pname = "threepenny-gui"; version = "0.9.1.0"; sha256 = "00sjkfa9qfnnwqfdw68yb8hq6nm1y5qv9896rzn5aachr7mlfpx2"; - revision = "1"; - editedCabalFile = "0zdpkp0pl6z4aabikbq30md392gk988fxwcqw10khv1icm143pcc"; + revision = "2"; + editedCabalFile = "0pbdkl9gvs6jrwfhrkfyrzra5mw8zy8pycp49czbhghwck51bf8i"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -269452,14 +269896,14 @@ self: { hydraPlatforms = lib.platforms.none; }) {}; - "time_1_13" = callPackage + "time_1_12_1" = callPackage ({ mkDerivation, base, criterion, deepseq, QuickCheck, random , tasty, tasty-hunit, tasty-quickcheck }: mkDerivation { pname = "time"; - version = "1.13"; - sha256 = "1i2czgawz0gx3b6mfkcjc8fk4b4jjdlq3znys6kcvzmb6s1lf61d"; + version = "1.12.1"; + sha256 = "02fnl9jr028gn2vkky1mfvrqqzzy123b1gic1yamn8cnq7xgzsn0"; libraryHaskellDepends = [ base deepseq ]; testHaskellDepends = [ base deepseq QuickCheck random tasty tasty-hunit tasty-quickcheck @@ -269513,6 +269957,8 @@ self: { pname = "time-compat"; version = "1.9.6.1"; sha256 = "103b3vpn277kkccv6jv54b2wpi5c00mpb01ndl9w4y4nxc0bn1xd"; + revision = "2"; + editedCabalFile = "01qzncax21hbv7qlx5p5km2pscyrq4jjvl99b7zj07g4ss72w6iq"; libraryHaskellDepends = [ base base-orphans deepseq hashable time ]; @@ -270697,27 +271143,6 @@ self: { }) {}; "tldr" = callPackage - ({ mkDerivation, ansi-terminal, base, bytestring, cmark, containers - , directory, filepath, http-conduit, optparse-applicative - , semigroups, tasty, tasty-golden, text, time, zip-archive - }: - mkDerivation { - pname = "tldr"; - version = "0.9.1"; - sha256 = "0xgj3mf51iv68fhgyrjvxfmzrbcwnk7siaynm213x0kgcyvkwbz0"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - ansi-terminal base bytestring cmark containers directory filepath - http-conduit optparse-applicative semigroups text time zip-archive - ]; - executableHaskellDepends = [ base ]; - testHaskellDepends = [ base tasty tasty-golden ]; - description = "Haskell tldr client"; - license = lib.licenses.bsd3; - }) {}; - - "tldr_0_9_2" = callPackage ({ mkDerivation, ansi-terminal, attoparsec, base, bytestring, cmark , containers, directory, filepath, http-conduit , optparse-applicative, semigroups, tasty, tasty-golden, text, time @@ -270738,7 +271163,6 @@ self: { testHaskellDepends = [ base tasty tasty-golden ]; description = "Haskell tldr client"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "tlex" = callPackage @@ -272913,12 +273337,12 @@ self: { license = lib.licenses.bsd3; }) {}; - "transformers-compat_0_7" = callPackage + "transformers-compat_0_7_1" = callPackage ({ mkDerivation, base, ghc-prim, transformers }: mkDerivation { pname = "transformers-compat"; - version = "0.7"; - sha256 = "13x9f3rq1ibx5lhzrsysg7m5nkqas75kv6b0zmzvspjiswfp7bd4"; + version = "0.7.1"; + sha256 = "102hydcqn7yjskzp586fvsw39dp3fi34fkskc7ykqkf16haqc2xc"; libraryHaskellDepends = [ base ghc-prim transformers ]; description = "A small compatibility shim for the transformers library"; license = lib.licenses.bsd3; @@ -273473,35 +273897,6 @@ self: { }) {}; "tree-diff" = callPackage - ({ mkDerivation, aeson, ansi-terminal, ansi-wl-pprint, base - , base-compat, bytestring, bytestring-builder, containers - , criterion, deepseq, Diff, hashable, parsec, parsers, pretty - , primitive, QuickCheck, scientific, semialign, strict, tagged - , tasty, tasty-golden, tasty-quickcheck, text, these, time - , trifecta, unordered-containers, uuid-types, vector - }: - mkDerivation { - pname = "tree-diff"; - version = "0.2"; - sha256 = "1ny7mi0n8cyb65q9ihbnm2gxiyya888dw2c4y0hjy8k882wdhf0x"; - revision = "1"; - editedCabalFile = "0brlnq5ddmambidll1dn4jnjac2i44a9hd5hwp2p0rbh1s8jfyhm"; - libraryHaskellDepends = [ - aeson ansi-terminal ansi-wl-pprint base base-compat bytestring - bytestring-builder containers deepseq hashable parsec parsers - pretty primitive QuickCheck scientific semialign strict tagged text - these time unordered-containers uuid-types vector - ]; - testHaskellDepends = [ - ansi-terminal ansi-wl-pprint base base-compat parsec primitive - QuickCheck tagged tasty tasty-golden tasty-quickcheck trifecta - ]; - benchmarkHaskellDepends = [ base criterion deepseq Diff ]; - description = "Diffing of (expression) trees"; - license = lib.licenses.gpl2Plus; - }) {}; - - "tree-diff_0_2_1" = callPackage ({ mkDerivation, aeson, ansi-terminal, ansi-wl-pprint, base , base-compat, bytestring, bytestring-builder, containers , criterion, deepseq, Diff, hashable, parsec, parsers, pretty @@ -273526,7 +273921,6 @@ self: { benchmarkHaskellDepends = [ base criterion deepseq Diff ]; description = "Diffing of (expression) trees"; license = lib.licenses.gpl2Plus; - hydraPlatforms = lib.platforms.none; }) {}; "tree-fun" = callPackage @@ -274690,8 +275084,8 @@ self: { }: mkDerivation { pname = "ttrie"; - version = "0.1.2.1"; - sha256 = "0s2a3zr99n0k8l847jcpzpi9vz8z69jjgxqd28b0p6jmi7llyi2h"; + version = "0.1.2.2"; + sha256 = "1w875avd1hh2zrg52p7ynnnwkg0v9n1i4imcqwamfycasz4yy3py"; libraryHaskellDepends = [ atomic-primops base hashable primitive stm ]; @@ -275958,8 +276352,8 @@ self: { pname = "type-equality"; version = "1"; sha256 = "1s4cl11rvvv7n95i3pq9lmmx08kwh4z7l3d1hbv4wi8il81baa27"; - revision = "2"; - editedCabalFile = "1a3irpv5kyg3rywhmcp5fwg5irrdbdr0hrlw7asdk113nakrba7j"; + revision = "3"; + editedCabalFile = "1jxr46yiah7i3jmdqclf8bvk3apmm6g8hpij7dv6ca6h7alk8fmv"; libraryHaskellDepends = [ base ]; description = "Data.Type.Equality compat package"; license = lib.licenses.bsd3; @@ -276678,8 +277072,8 @@ self: { }: mkDerivation { pname = "typed-process"; - version = "0.2.6.3"; - sha256 = "071mw4yv4xr5n82si33qbcqcxvcr7h56zlyd8gmsfrsdnacbq47k"; + version = "0.2.7.0"; + sha256 = "07iwas0awr9kcfkgd8fqdhaamyrppc1zpa01q3qix3afz0lwwy47"; libraryHaskellDepends = [ async base bytestring process stm transformers unliftio-core ]; @@ -277753,8 +278147,8 @@ self: { ({ mkDerivation, base, bytestring, mmsyn2-array, mmsyn5 }: mkDerivation { pname = "ukrainian-phonetics-basic-array"; - version = "0.1.2.0"; - sha256 = "1a1crwz47vrrqr3bydzhknacmv5yafrpc33417mmp68qqhccdc23"; + version = "0.4.1.0"; + sha256 = "09gs3d37njv5acr6nqcw899y0pycy4qxnqc36d7f4r8ny4w8lvp5"; libraryHaskellDepends = [ base bytestring mmsyn2-array mmsyn5 ]; description = "A library to work with the basic Ukrainian phonetics and syllable segmentation"; license = lib.licenses.mit; @@ -277878,26 +278272,29 @@ self: { }) {}; "unbeliever" = callPackage - ({ mkDerivation, base, bytestring, core-data, core-program - , core-text, fingertree, gauge, hashable, hspec, prettyprinter - , safe-exceptions, text, text-short, unordered-containers + ({ mkDerivation, async, base, bytestring, core-data, core-program + , core-telemetry, core-text, fingertree, gauge, hashable, hspec + , prettyprinter, safe-exceptions, stm, text, text-short + , unordered-containers }: mkDerivation { pname = "unbeliever"; - version = "0.10.0.8"; - sha256 = "062xr66i96kwvbwf4pr51ybiavy6wbijzz7zy0si18g13x00x54c"; - libraryHaskellDepends = [ base core-data core-program core-text ]; + version = "0.11.0.1"; + sha256 = "14ndxvvw6nxbm68njmpr2f5s3plqnl8b0vfmwp4jik07p7qdil78"; + isLibrary = false; + isExecutable = false; testHaskellDepends = [ - base bytestring core-data core-program core-text fingertree - hashable hspec prettyprinter safe-exceptions text text-short - unordered-containers + async base bytestring core-data core-program core-telemetry + core-text fingertree hashable hspec prettyprinter safe-exceptions + stm text text-short unordered-containers ]; benchmarkHaskellDepends = [ - base bytestring core-data core-program core-text gauge text + base bytestring core-data core-program core-telemetry core-text + gauge text ]; - doHaddock = false; description = "Opinionated Haskell Interoperability"; - license = lib.licenses.bsd3; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "unbound" = callPackage @@ -279280,6 +279677,23 @@ self: { license = lib.licenses.bsd3; }) {}; + "universe_1_2_2" = callPackage + ({ mkDerivation, universe-base, universe-instances-extended + , universe-reverse-instances, universe-some + }: + mkDerivation { + pname = "universe"; + version = "1.2.2"; + sha256 = "06rxcbqdcf6fd0za3nvdhsqmki6ihxs6j66jqky3wqkis7bmy3ia"; + libraryHaskellDepends = [ + universe-base universe-instances-extended + universe-reverse-instances universe-some + ]; + description = "A class for finite and recursively enumerable types"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "universe-base" = callPackage ({ mkDerivation, base, containers, QuickCheck, tagged, transformers }: @@ -279293,12 +279707,31 @@ self: { license = lib.licenses.bsd3; }) {}; + "universe-base_1_1_3" = callPackage + ({ mkDerivation, base, containers, OneTuple, QuickCheck, tagged + , transformers + }: + mkDerivation { + pname = "universe-base"; + version = "1.1.3"; + sha256 = "0lnvjpndqj7kk3f95dmpa62ax0m243h8iy7ghcsd2db4nyczx7f5"; + libraryHaskellDepends = [ + base containers OneTuple tagged transformers + ]; + testHaskellDepends = [ base containers QuickCheck ]; + description = "A class for finite and recursively enumerable types"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "universe-dependent-sum" = callPackage ({ mkDerivation, base, universe-some }: mkDerivation { pname = "universe-dependent-sum"; version = "1.3"; sha256 = "0fwqx4fzs9s09fwrf715simqb0vxnx3z7q35zbv9mkj1m6nbrsk5"; + revision = "1"; + editedCabalFile = "1d300h7587cry0xdhrlg9sz34z2il94r5xxqxxp17r62xc98alwl"; libraryHaskellDepends = [ base universe-some ]; description = "Universe instances for types from dependent-sum"; license = lib.licenses.bsd3; @@ -279334,6 +279767,22 @@ self: { license = lib.licenses.bsd3; }) {}; + "universe-instances-extended_1_1_3" = callPackage + ({ mkDerivation, adjunctions, base, comonad, containers + , universe-base + }: + mkDerivation { + pname = "universe-instances-extended"; + version = "1.1.3"; + sha256 = "02fxra5g76dk2jpbvmj0mj5bylj4400fcp3np3s5d31qgsjh2sn6"; + libraryHaskellDepends = [ + adjunctions base comonad containers universe-base + ]; + description = "Universe instances for types from selected extra packages"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "universe-instances-trans" = callPackage ({ mkDerivation, base, universe-base }: mkDerivation { @@ -279353,6 +279802,8 @@ self: { pname = "universe-reverse-instances"; version = "1.1.1"; sha256 = "0wzvrnccj9hq1x55vy7a8xzppgf0zmbnlm3yz02qx3dglq97w4n4"; + revision = "1"; + editedCabalFile = "16g0iffwy1xb5qnrbqvg0ypjx4q2124g2a80i36ynkzknhggkqnx"; libraryHaskellDepends = [ base containers universe-base ]; description = "Instances of standard classes that are made possible by enumerations"; license = lib.licenses.bsd3; @@ -279366,6 +279817,8 @@ self: { pname = "universe-some"; version = "1.2.1"; sha256 = "0pdvk5qi39d0wg8ac936c1fxs7v7qld2ggpqc9v7xc4pk3xq24bp"; + revision = "1"; + editedCabalFile = "1hrb5anm2cp2a8zhhzazxc8zjm2nm8q7zvl1c4shx7arpi1ka3ax"; libraryHaskellDepends = [ base some template-haskell th-abstraction transformers universe-base @@ -279443,19 +279896,19 @@ self: { ({ mkDerivation, base, bytestring }: mkDerivation { pname = "unix-bytestring"; - version = "0.3.7.3"; - sha256 = "1340zxy9w8nmmhhwgg9rznvz8iyfhinpycdpkryqp60ilhyjgv53"; + version = "0.3.7.5"; + sha256 = "003003nh00aww2k8wdygjp0z7f61z8nz8840iinww83xph5wsih5"; libraryHaskellDepends = [ base bytestring ]; description = "Unix/Posix-specific functions for ByteStrings"; license = lib.licenses.bsd3; }) {}; - "unix-bytestring_0_3_7_5" = callPackage + "unix-bytestring_0_3_7_6" = callPackage ({ mkDerivation, base, bytestring }: mkDerivation { pname = "unix-bytestring"; - version = "0.3.7.5"; - sha256 = "003003nh00aww2k8wdygjp0z7f61z8nz8840iinww83xph5wsih5"; + version = "0.3.7.6"; + sha256 = "1f9hf7blxy8ckakd0klrs16q0hfvxfarbjgyrc7azgbb86m1skb3"; libraryHaskellDepends = [ base bytestring ]; description = "Unix/Posix-specific functions for ByteStrings"; license = lib.licenses.bsd3; @@ -281691,6 +282144,8 @@ self: { pname = "uuid-types"; version = "1.0.5"; sha256 = "1pd7xd6inkmmwjscf7pmiwqjks9y0gi1p8ahqbapvh34gadvhs5d"; + revision = "1"; + editedCabalFile = "16n39hl1i1amvca70bkkl6hxs9q90n6kp14aqb380q2l2f5pdr3w"; libraryHaskellDepends = [ base binary bytestring deepseq hashable random template-haskell text @@ -282567,6 +283022,8 @@ self: { pname = "vault"; version = "0.3.1.5"; sha256 = "181ksk1yixjg0jiggw5jvm8am8m8c7lim4xaixf8qnaqvxm6namc"; + revision = "1"; + editedCabalFile = "07b4ajdj0fi1qbf641qnql7vfd1aj6i554jxpy55xnr2laspsr6i"; libraryHaskellDepends = [ base containers hashable unordered-containers ]; @@ -282994,6 +283451,8 @@ self: { pname = "vector-binary-instances"; version = "0.2.5.2"; sha256 = "0kgmlb4rf89b18d348cf2k06xfhdpamhmvq7iz5pab5014hknbmp"; + revision = "1"; + editedCabalFile = "0rbjskq11wlfa97h8bidzk145lkqrv00kx1rgwgdcfbgz1l73iha"; libraryHaskellDepends = [ base binary vector ]; testHaskellDepends = [ base binary tasty tasty-quickcheck vector ]; benchmarkHaskellDepends = [ @@ -284962,8 +285421,8 @@ self: { }: mkDerivation { pname = "vulkan"; - version = "3.13"; - sha256 = "14cb1fg0x0fy2bvjyjmxvbq2sm56ixzvz9sqacs7nak961yyvdy0"; + version = "3.13.1"; + sha256 = "1z5a7flk0c68p70l4mqc8ws45l4yqj4rfrcqshbbfqq54dwc5nlx"; libraryHaskellDepends = [ base bytestring transformers vector ]; libraryPkgconfigDepends = [ vulkan ]; testHaskellDepends = [ @@ -285370,6 +285829,28 @@ self: { license = lib.licenses.bsd3; }) {}; + "wai-enforce-https_1_0_0_0" = callPackage + ({ mkDerivation, base, bytestring, case-insensitive, hspec + , http-types, network, text, wai, wai-extra + }: + mkDerivation { + pname = "wai-enforce-https"; + version = "1.0.0.0"; + sha256 = "08hygyl930bwjxfvzds7wwl9yv94q7612bfg68qzmq2dfivypkfq"; + isLibrary = true; + isExecutable = true; + enableSeparateDataOutput = true; + libraryHaskellDepends = [ + base bytestring case-insensitive http-types network text wai + ]; + testHaskellDepends = [ + base bytestring case-insensitive hspec http-types wai wai-extra + ]; + description = "Enforce HTTPS in Wai server app safely"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "wai-eventsource" = callPackage ({ mkDerivation, wai }: mkDerivation { @@ -285392,8 +285873,8 @@ self: { }: mkDerivation { pname = "wai-extra"; - version = "3.1.6"; - sha256 = "03bbhmy8dc2ivhgbsrc39wk5kb9ci4p98pb2qcq2w92imy710cj6"; + version = "3.1.7"; + sha256 = "1avf7bjcsbs8l6klp5kkd0cd2dc5n0j0a2yf8813pnwfn5b7qyd4"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -285413,25 +285894,6 @@ self: { }) {}; "wai-feature-flags" = callPackage - ({ mkDerivation, aeson, base, bytestring, random, text - , unordered-containers, wai, warp - }: - mkDerivation { - pname = "wai-feature-flags"; - version = "0.1.0.1"; - sha256 = "0g4w4snga1mk61d8mldvdzz7804vwv4l5qk0rj8z1g3j16ncijnk"; - isLibrary = true; - isExecutable = true; - enableSeparateDataOutput = true; - libraryHaskellDepends = [ - aeson base bytestring random text unordered-containers wai - ]; - executableHaskellDepends = [ base wai warp ]; - description = "Feature flag support for WAI applications"; - license = lib.licenses.bsd3; - }) {}; - - "wai-feature-flags_0_1_0_2" = callPackage ({ mkDerivation, aeson, base, bytestring, splitmix, text , unordered-containers, wai, warp }: @@ -285448,7 +285910,6 @@ self: { executableHaskellDepends = [ base wai warp ]; description = "Feature flag support for WAI applications"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "wai-frontend-monadcgi" = callPackage @@ -286383,10 +286844,8 @@ self: { }: mkDerivation { pname = "wai-middleware-static"; - version = "0.9.0"; - sha256 = "161s2lk9529008219q6fgbmv0rkf74jmfj1cii8zxkgnhpvi22zs"; - revision = "1"; - editedCabalFile = "1lvinpyfyb5ryxn3g41mgg6w7l7nzyh7sylmms7nvdvaqzx7l3lv"; + version = "0.9.1"; + sha256 = "0zf91kq5mdbdzi7rccyjrk5y4lpnwl8pb83wpcifr0gqp6a6avcy"; libraryHaskellDepends = [ base bytestring containers cryptonite directory expiring-cache-map filepath http-types memory mime-types old-locale semigroups text @@ -288050,6 +288509,7 @@ self: { description = "WAI based library for web api"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "webapp" = callPackage @@ -288215,6 +288675,8 @@ self: { pname = "webdriver"; version = "0.9.0.1"; sha256 = "1w6z95swrz5ijmcxh0x3i521kpxqfp6pxgqfqwix7fc4jy450n8k"; + revision = "1"; + editedCabalFile = "04bl53yr1144a3nv9avqjvhl20q0qc5gik6p7cd2naz3i5hfvid1"; libraryHaskellDepends = [ aeson attoparsec base base64-bytestring bytestring call-stack data-default-class directory directory-tree exceptions filepath @@ -288521,8 +288983,8 @@ self: { ({ mkDerivation, base, Cabal, gtk2hs-buildtools, webkitgtk }: mkDerivation { pname = "webkit2gtk3-javascriptcore"; - version = "0.14.4.2"; - sha256 = "1l77qh9iyrcvsf0kha9vcm1v6fayk5i71qprdzbvfp5sihbcnz3r"; + version = "0.14.4.3"; + sha256 = "177qh668fx41sizb7lq4w3f43ii0n54vcqgv20a5hywbygzfz9hy"; setupHaskellDepends = [ base Cabal gtk2hs-buildtools ]; libraryHaskellDepends = [ base ]; libraryPkgconfigDepends = [ webkitgtk ]; @@ -288695,8 +289157,8 @@ self: { }: mkDerivation { pname = "websockets"; - version = "0.12.7.2"; - sha256 = "1b92a41l2var1ccg350mh2bjmb2plb6d79yzvmlwkd41nifmmi44"; + version = "0.12.7.3"; + sha256 = "0g3z0n4irf3gvbdf9p97jq05ybdg0gwjy5bj4nfc7ivsvyhaic6k"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -289795,31 +290257,6 @@ self: { }) {}; "witherable" = callPackage - ({ mkDerivation, base, base-orphans, containers, hashable - , indexed-traversable, indexed-traversable-instances, QuickCheck - , quickcheck-instances, tasty, tasty-quickcheck, transformers - , unordered-containers, vector - }: - mkDerivation { - pname = "witherable"; - version = "0.4.1"; - sha256 = "1jj2dq0ddaa2v3hksnrv1z1ll19fa4npsqlp7fs4nn5g6833y58b"; - revision = "1"; - editedCabalFile = "02l2gbcab7w72hqlbs1ikylgb1970a0iyrikn847nncivbzrc3gj"; - libraryHaskellDepends = [ - base base-orphans containers hashable indexed-traversable - indexed-traversable-instances transformers unordered-containers - vector - ]; - testHaskellDepends = [ - base containers hashable QuickCheck quickcheck-instances tasty - tasty-quickcheck transformers unordered-containers vector - ]; - description = "filterable traversable"; - license = lib.licenses.bsd3; - }) {}; - - "witherable_0_4_2" = callPackage ({ mkDerivation, base, base-orphans, containers, hashable , indexed-traversable, indexed-traversable-instances, QuickCheck , quickcheck-instances, tasty, tasty-quickcheck, transformers @@ -289840,7 +290277,6 @@ self: { ]; description = "filterable traversable"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "witherable-class" = callPackage @@ -290728,10 +291164,8 @@ self: { }: mkDerivation { pname = "worldturtle"; - version = "0.2.2.0"; - sha256 = "0h7zhgpddhmsxmz1x7hmz785r4mx7i37ad16621wmnc1w84zcfaq"; - revision = "1"; - editedCabalFile = "1m8mivb0xsbbyrbc27r9kdkkfyd5wnasppjx8ywpsl2xknmxx918"; + version = "0.2.2.1"; + sha256 = "1mi1lhrfj2wim7xfqqz7zf73aaxlaj0g8d8q8z7jc7vv5qf28brb"; libraryHaskellDepends = [ base containers gloss lens matrix transformers ]; @@ -290784,8 +291218,8 @@ self: { pname = "wrapped"; version = "0.1.0.1"; sha256 = "00fvammhn4dlna5d1dc8lpwrdrigj9cnlyi8scwslibr6bjsjzfp"; - revision = "1"; - editedCabalFile = "0qfl0k0bsxhf5zibfdfm08jn82j1nm8pdnmv23znmhv77hpm4li8"; + revision = "2"; + editedCabalFile = "1balrpfkhlwp7v4r74zdm3x7ckz605bj7z7l5gkyj96lk1l2b5kq"; libraryHaskellDepends = [ base ]; description = "Newtypes to carry DerivingVia instances"; license = lib.licenses.asl20; @@ -290797,8 +291231,8 @@ self: { pname = "wrapped-generic-default"; version = "0.1.0.1"; sha256 = "10hbz8m98cw8lr2xj0wkc017pnypagb11ss1ihpp6lnc4w1hpj3f"; - revision = "1"; - editedCabalFile = "0i75biqz6qml17yzg3k4q0ms5vzvwph37da1wl3l5v8cjnw2yrs7"; + revision = "2"; + editedCabalFile = "1pyggg9n3i08w4fzbm463012fjm1wdi0bh5nik667y5dhzvqi2li"; libraryHaskellDepends = [ base data-default-class wrapped ]; description = "A Generic instance of Default"; license = lib.licenses.asl20; @@ -293465,6 +293899,35 @@ self: { maintainers = with lib.maintainers; [ peti ]; }) {}; + "xmonad_0_17_0" = callPackage + ({ mkDerivation, base, containers, data-default-class, directory + , filepath, mtl, process, QuickCheck, quickcheck-classes, setlocale + , time, transformers, unix, X11 + }: + mkDerivation { + pname = "xmonad"; + version = "0.17.0"; + sha256 = "04qspdz9w6xpw1npcmx2zx0595wc68q985pv4i0hvp32zillvdqy"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base containers data-default-class directory filepath mtl process + setlocale time transformers unix X11 + ]; + executableHaskellDepends = [ base ]; + testHaskellDepends = [ + base containers QuickCheck quickcheck-classes X11 + ]; + postInstall = '' + install -D man/xmonad.1 ''${!outputDoc}/share/man/man1/xmonad.1 + install -D man/xmonad.hs ''${!outputDoc}/share/doc/$name/sample-xmonad.hs + ''; + description = "A tiling window manager"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + maintainers = with lib.maintainers; [ peti ]; + }) {}; + "xmonad-bluetilebranch" = callPackage ({ mkDerivation, base, containers, directory, extensible-exceptions , filepath, mtl, process, unix, X11 @@ -293508,6 +293971,29 @@ self: { maintainers = with lib.maintainers; [ peti ]; }) {}; + "xmonad-contrib_0_17_0" = callPackage + ({ mkDerivation, base, bytestring, containers, directory, filepath + , hspec, mtl, process, QuickCheck, random, time, unix, utf8-string + , X11, X11-xft, xmonad + }: + mkDerivation { + pname = "xmonad-contrib"; + version = "0.17.0"; + sha256 = "11g1cyfgfvcmz35qhgi9wzxrk3br8m8b7qy3jvph4nnf6aj13wvy"; + libraryHaskellDepends = [ + base bytestring containers directory filepath mtl process random + time unix utf8-string X11 X11-xft xmonad + ]; + testHaskellDepends = [ + base containers directory hspec mtl process QuickCheck random time + unix utf8-string X11 xmonad + ]; + description = "Community-maintained extensions extensions for xmonad"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + maintainers = with lib.maintainers; [ peti ]; + }) {}; + "xmonad-contrib-bluetilebranch" = callPackage ({ mkDerivation, base, containers, directory, extensible-exceptions , mtl, old-locale, old-time, process, random, unix, utf8-string @@ -293612,6 +294098,29 @@ self: { ]; }) {}; + "xmonad-extras_0_17_0" = callPackage + ({ mkDerivation, alsa-mixer, base, bytestring, containers, hint + , libmpd, mtl, network, regex-posix, X11, xmonad, xmonad-contrib + }: + mkDerivation { + pname = "xmonad-extras"; + version = "0.17.0"; + sha256 = "0kkwng84hp19vc9nw97y77n3hsg9scn0c9fa1ivf4r9s5x3p6flx"; + configureFlags = [ + "-f-with_hlist" "-fwith_parsec" "-fwith_split" + ]; + libraryHaskellDepends = [ + alsa-mixer base bytestring containers hint libmpd mtl network + regex-posix X11 xmonad xmonad-contrib + ]; + description = "Third party extensions for xmonad with wacky dependencies"; + license = lib.licenses.bsd3; + platforms = [ + "aarch64-linux" "armv7l-linux" "i686-linux" "x86_64-linux" + ]; + hydraPlatforms = lib.platforms.none; + }) {}; + "xmonad-screenshot" = callPackage ({ mkDerivation, base, gtk, xmonad }: mkDerivation { @@ -294602,37 +295111,6 @@ self: { }) {}; "yaml" = callPackage - ({ mkDerivation, aeson, attoparsec, base, base-compat, bytestring - , conduit, containers, directory, filepath, hspec, HUnit, libyaml - , mockery, mtl, raw-strings-qq, resourcet, scientific - , template-haskell, temporary, text, transformers - , unordered-containers, vector - }: - mkDerivation { - pname = "yaml"; - version = "0.11.6.0"; - sha256 = "0hxg9mfi1dn9a7kp3imzfvnk7jj4sdjdxi6xyqz9ra7lqg14np3r"; - revision = "1"; - editedCabalFile = "1yydwna0x7fj1zw0zkz3n1cfvnwdykblk19wz5bw9rcwp0i0mzkb"; - configureFlags = [ "-fsystem-libyaml" ]; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - aeson attoparsec base bytestring conduit containers directory - filepath libyaml mtl resourcet scientific template-haskell text - transformers unordered-containers vector - ]; - testHaskellDepends = [ - aeson attoparsec base base-compat bytestring conduit containers - directory filepath hspec HUnit libyaml mockery mtl raw-strings-qq - resourcet scientific template-haskell temporary text transformers - unordered-containers vector - ]; - description = "Support for parsing and rendering YAML documents"; - license = lib.licenses.bsd3; - }) {}; - - "yaml_0_11_7_0" = callPackage ({ mkDerivation, aeson, attoparsec, base, base-compat, bytestring , conduit, containers, directory, filepath, hspec, HUnit, libyaml , mockery, mtl, raw-strings-qq, resourcet, scientific @@ -294659,7 +295137,6 @@ self: { ]; description = "Support for parsing and rendering YAML documents"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "yaml-combinators" = callPackage @@ -294690,6 +295167,8 @@ self: { pname = "yaml-config"; version = "0.4.0"; sha256 = "03pq9d484qiia83zhzh1hix0a2hs6wyy3wkqhh2n7min7q5mcmvk"; + revision = "1"; + editedCabalFile = "0h4zvds37vv1w4656rcslzyvwy2fxjiw0hhyjkhjzwqf7ls2y37d"; libraryHaskellDepends = [ base deepseq text unordered-containers yaml ]; @@ -294699,6 +295178,8 @@ self: { ]; description = "Configuration management"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "yaml-light" = callPackage @@ -294796,6 +295277,35 @@ self: { hydraPlatforms = lib.platforms.none; }) {}; + "yaml-streamly" = callPackage + ({ mkDerivation, aeson, attoparsec, base, base-compat, bytestring + , containers, directory, filepath, hspec, hspec-discover, HUnit + , libyaml-streamly, mockery, mtl, raw-strings-qq, safe-exceptions + , scientific, streamly, template-haskell, temporary, text + , transformers, unordered-containers, vector + }: + mkDerivation { + pname = "yaml-streamly"; + version = "0.12.0"; + sha256 = "1jvvj1g20n8v7rnbvqgsvqm7l4nnh97ibkvb2zkj2wskir0l00mc"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson attoparsec base bytestring containers directory filepath + libyaml-streamly mtl safe-exceptions scientific streamly + template-haskell text transformers unordered-containers vector + ]; + testHaskellDepends = [ + aeson base base-compat bytestring directory hspec HUnit + libyaml-streamly mockery raw-strings-qq scientific streamly + temporary text unordered-containers vector + ]; + testToolDepends = [ hspec-discover ]; + description = "Support for parsing and rendering YAML documents"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "yaml-union" = callPackage ({ mkDerivation, aeson, base, bytestring, directory, filepath , hspec, optparse-applicative, QuickCheck, quickcheck-instances @@ -294895,8 +295405,8 @@ self: { }: mkDerivation { pname = "yamlparse-applicative"; - version = "0.2.0.0"; - sha256 = "1c287mc7rl6xhwsb3gw51m6sx29dz88a9b6qa0b324hgcmf086sk"; + version = "0.2.0.1"; + sha256 = "1b4qz5qy7349bx7kkz9nf2p13hr8a2xyirsw92y4vigpjd16fvs4"; libraryHaskellDepends = [ aeson base bytestring containers optparse-applicative path path-io prettyprinter safe-coloured-text scientific text @@ -295084,8 +295594,8 @@ self: { }: mkDerivation { pname = "yapb"; - version = "0.1.3.1"; - sha256 = "1jscmf1rm6fknsd4088ij0nsldgrz14v4xwfkbc5500hg81ikpqv"; + version = "0.1.3.2"; + sha256 = "15apb25gri0d2w8pg05by98mvjnxjvgk73km0byl4im10m04r11w"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -295196,8 +295706,8 @@ self: { pname = "yasi"; version = "0.1.2.1"; sha256 = "0647z79wva7apkp0swj7gax780vqmhr5czxrvg88gl3bi03wcapl"; - revision = "1"; - editedCabalFile = "05vz40sxmwj9kxfk3s7nx4l6bhj4qpvd62nfkqa7xh9vgfj6rv31"; + revision = "2"; + editedCabalFile = "1pn72i0177k1x1frl0k8lqkw2vxnq77vhs9kgmvg4r76mw2z2vkm"; libraryHaskellDepends = [ base bytestring template-haskell text ]; testHaskellDepends = [ base hedgehog tasty tasty-hedgehog tasty-hunit text @@ -298703,39 +299213,6 @@ self: { }) {}; "zenacy-html" = callPackage - ({ mkDerivation, base, bytestring, containers, criterion - , data-default, dlist, extra, HUnit, mtl, pretty-show - , raw-strings-qq, safe, safe-exceptions, test-framework - , test-framework-hunit, text, transformers, vector, word8 - }: - mkDerivation { - pname = "zenacy-html"; - version = "2.0.3"; - sha256 = "1lbgl2g921prcgl0pk5c8mzfy7ssnnrk7d4rz047xhgb3x0381nc"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - base bytestring containers data-default dlist extra mtl pretty-show - safe safe-exceptions text transformers vector word8 - ]; - executableHaskellDepends = [ - base bytestring containers data-default dlist extra pretty-show - text vector - ]; - testHaskellDepends = [ - base bytestring containers data-default dlist extra HUnit mtl - pretty-show raw-strings-qq test-framework test-framework-hunit text - transformers - ]; - benchmarkHaskellDepends = [ - base bytestring containers criterion data-default dlist pretty-show - raw-strings-qq text - ]; - description = "A standard compliant HTML parsing library"; - license = lib.licenses.mit; - }) {}; - - "zenacy-html_2_0_4" = callPackage ({ mkDerivation, base, bytestring, containers, criterion , data-default, dlist, extra, HUnit, mtl, pretty-show , raw-strings-qq, safe, safe-exceptions, test-framework @@ -298766,7 +299243,6 @@ self: { ]; description = "A standard compliant HTML parsing library"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "zenacy-unicode" = callPackage @@ -298863,8 +299339,8 @@ self: { }: mkDerivation { pname = "zeolite-lang"; - version = "0.18.0.1"; - sha256 = "0sjzqn1mxqqlqg4zhkl1r3nh125i0pkpl2lplw99dgsbpdv8q71a"; + version = "0.19.0.0"; + sha256 = "1qhmc55b5a5vvgwskp0lg4rq1vmsy9hb6h4cplb457cp53d329s6"; isLibrary = false; isExecutable = true; enableSeparateDataOutput = true; @@ -298913,6 +299389,7 @@ self: { description = "Zephyr, tree-shaking for the PureScript language"; license = lib.licenses.mpl20; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "zero" = callPackage @@ -299374,10 +299851,8 @@ self: { }: mkDerivation { pname = "zip"; - version = "1.7.1"; - sha256 = "0impiv9xsirbvnpnv1lh6lhnl8a4fqylpjif7niyjjbcvyxh4zqd"; - revision = "1"; - editedCabalFile = "0a8wj2bkg66mhiac2m71n39ynvvcx5ar79ak35fmn1is73z7c5xk"; + version = "1.7.2"; + sha256 = "1c5pr3hv11dpn4ybd4742qkpqmvb9l3l7xmzlsf65wm2p8071dvj"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -299638,6 +300113,22 @@ self: { license = lib.licenses.bsd3; }) {}; + "zlib-bytes" = callPackage + ({ mkDerivation, base, byteslice, bytestring, mtl, primitive, tasty + , tasty-quickcheck + }: + mkDerivation { + pname = "zlib-bytes"; + version = "0.1.0.0"; + sha256 = "0a8hqk5vw49fiwvdgf5glg2s49zkjgydy6bfasas2zl3ibvcy7xw"; + libraryHaskellDepends = [ base byteslice mtl primitive ]; + testHaskellDepends = [ + base byteslice bytestring primitive tasty tasty-quickcheck + ]; + description = "zlib compression bindings"; + license = lib.licenses.bsd3; + }) {}; + "zlib-conduit" = callPackage ({ mkDerivation, base, conduit }: mkDerivation { diff --git a/pkgs/development/haskell-modules/lib.nix b/pkgs/development/haskell-modules/lib.nix index b0d036e0e3e8..5aa2d6865279 100644 --- a/pkgs/development/haskell-modules/lib.nix +++ b/pkgs/development/haskell-modules/lib.nix @@ -3,10 +3,18 @@ { pkgs, lib }: rec { + /* The same functionality as this haskell.lib, except that the derivation + being overridden is always the last parameter. This permits more natural + composition of several overrides, i.e. without having to nestle one call + between the function name and argument of another. haskell.lib.compose is + preferred for any new code. + */ + compose = import ./lib/compose.nix { inherit pkgs lib; }; + /* This function takes a file like `hackage-packages.nix` and constructs a full package set out of that. */ - makePackageSet = import ./make-package-set.nix; + makePackageSet = compose.makePackageSet; /* The function overrideCabal lets you alter the arguments to the mkDerivation function. @@ -34,47 +42,37 @@ rec { "https://github.com/bos/aeson#readme" */ - overrideCabal = drv: f: (drv.override (args: args // { - mkDerivation = drv: (args.mkDerivation drv).override f; - })) // { - overrideScope = scope: overrideCabal (drv.overrideScope scope) f; - }; + overrideCabal = drv: f: compose.overrideCabal f drv; # : Map Name (Either Path VersionNumber) -> HaskellPackageOverrideSet # Given a set whose values are either paths or version strings, produces # a package override set (i.e. (self: super: { etc. })) that sets # the packages named in the input set to the corresponding versions - packageSourceOverrides = - overrides: self: super: pkgs.lib.mapAttrs (name: src: - let isPath = x: builtins.substring 0 1 (toString x) == "/"; - generateExprs = if isPath src - then self.callCabal2nix - else self.callHackage; - in generateExprs name src {}) overrides; + packageSourceOverrides = compose.packageSourceOverrides; /* doCoverage modifies a haskell package to enable the generation and installation of a coverage report. See https://wiki.haskell.org/Haskell_program_coverage */ - doCoverage = drv: overrideCabal drv (drv: { doCoverage = true; }); + doCoverage = compose.doCoverage; /* dontCoverage modifies a haskell package to disable the generation and installation of a coverage report. */ - dontCoverage = drv: overrideCabal drv (drv: { doCoverage = false; }); + dontCoverage = compose.dontCoverage; /* doHaddock modifies a haskell package to enable the generation and installation of API documentation from code comments using the haddock tool. */ - doHaddock = drv: overrideCabal drv (drv: { doHaddock = true; }); + doHaddock = compose.doHaddock; /* dontHaddock modifies a haskell package to disable the generation and installation of API documentation from code comments using the haddock tool. */ - dontHaddock = drv: overrideCabal drv (drv: { doHaddock = false; }); + dontHaddock = compose.dontHaddock; /* doJailbreak enables the removal of version bounds from the cabal file. You may want to avoid this function. @@ -92,39 +90,39 @@ rec { https://github.com/peti/jailbreak-cabal/issues/7 has further details. */ - doJailbreak = drv: overrideCabal drv (drv: { jailbreak = true; }); + doJailbreak = compose.doJailbreak; /* dontJailbreak restores the use of the version bounds the check the use of dependencies in the package description. */ - dontJailbreak = drv: overrideCabal drv (drv: { jailbreak = false; }); + dontJailbreak = compose.dontJailbreak; /* doCheck enables dependency checking, compilation and execution of test suites listed in the package description file. */ - doCheck = drv: overrideCabal drv (drv: { doCheck = true; }); + doCheck = compose.doCheck; /* dontCheck disables dependency checking, compilation and execution of test suites listed in the package description file. */ - dontCheck = drv: overrideCabal drv (drv: { doCheck = false; }); + dontCheck = compose.dontCheck; /* doBenchmark enables dependency checking, compilation and execution for benchmarks listed in the package description file. */ - doBenchmark = drv: overrideCabal drv (drv: { doBenchmark = true; }); + doBenchmark = compose.doBenchmark; /* dontBenchmark disables dependency checking, compilation and execution for benchmarks listed in the package description file. */ - dontBenchmark = drv: overrideCabal drv (drv: { doBenchmark = false; }); + dontBenchmark = compose.dontBenchmark; /* doDistribute enables the distribution of binaries for the package via hydra. */ - doDistribute = drv: overrideCabal drv (drv: { hydraPlatforms = drv.platforms or ["i686-linux" "x86_64-linux" "x86_64-darwin"]; }); + doDistribute = compose.doDistribute; /* dontDistribute disables the distribution of binaries for the package via hydra. */ - dontDistribute = drv: overrideCabal drv (drv: { hydraPlatforms = []; }); + dontDistribute = compose.dontDistribute; /* appendConfigureFlag adds a single argument that will be passed to the cabal configure command, after the arguments that have been defined @@ -134,67 +132,67 @@ rec { > haskell.lib.appendConfigureFlag haskellPackages.servant "--profiling-detail=all-functions" */ - appendConfigureFlag = drv: x: appendConfigureFlags drv [x]; - appendConfigureFlags = drv: xs: overrideCabal drv (drv: { configureFlags = (drv.configureFlags or []) ++ xs; }); + appendConfigureFlag = drv: x: compose.appendConfigureFlag x drv; + appendConfigureFlags = drv: xs: compose.appendConfigureFlags xs drv; - appendBuildFlag = drv: x: overrideCabal drv (drv: { buildFlags = (drv.buildFlags or []) ++ [x]; }); - appendBuildFlags = drv: xs: overrideCabal drv (drv: { buildFlags = (drv.buildFlags or []) ++ xs; }); + appendBuildFlag = drv: x: compose.appendBuildFlag x drv; + appendBuildFlags = drv: xs: compose.appendBuildFlags xs drv; /* removeConfigureFlag drv x is a Haskell package like drv, but with all cabal configure arguments that are equal to x removed. > haskell.lib.removeConfigureFlag haskellPackages.servant "--verbose" */ - removeConfigureFlag = drv: x: overrideCabal drv (drv: { configureFlags = lib.remove x (drv.configureFlags or []); }); + removeConfigureFlag = drv: x: compose.removeConfigureFlag x drv; - addBuildTool = drv: x: addBuildTools drv [x]; - addBuildTools = drv: xs: overrideCabal drv (drv: { buildTools = (drv.buildTools or []) ++ xs; }); + addBuildTool = drv: x: compose.addBuildTool x drv; + addBuildTools = drv: xs: compose.addBuildTools xs drv; - addExtraLibrary = drv: x: addExtraLibraries drv [x]; - addExtraLibraries = drv: xs: overrideCabal drv (drv: { extraLibraries = (drv.extraLibraries or []) ++ xs; }); + addExtraLibrary = drv: x: compose.addExtraLibrary x drv; + addExtraLibraries = drv: xs: compose.addExtraLibraries xs drv; - addBuildDepend = drv: x: addBuildDepends drv [x]; - addBuildDepends = drv: xs: overrideCabal drv (drv: { buildDepends = (drv.buildDepends or []) ++ xs; }); + addBuildDepend = drv: x: compose.addBuildDepend x drv; + addBuildDepends = drv: xs: compose.addBuildDepends xs drv; - addTestToolDepend = drv: x: addTestToolDepends drv [x]; - addTestToolDepends = drv: xs: overrideCabal drv (drv: { testToolDepends = (drv.testToolDepends or []) ++ xs; }); + addTestToolDepend = drv: x: compose.addTestToolDepend x drv; + addTestToolDepends = drv: xs: compose.addTestToolDepends xs drv; - addPkgconfigDepend = drv: x: addPkgconfigDepends drv [x]; - addPkgconfigDepends = drv: xs: overrideCabal drv (drv: { pkg-configDepends = (drv.pkg-configDepends or []) ++ xs; }); + addPkgconfigDepend = drv: x: compose.addPkgconfigDepend x drv; + addPkgconfigDepends = drv: xs: compose.addPkgconfigDepends xs drv; - addSetupDepend = drv: x: addSetupDepends drv [x]; - addSetupDepends = drv: xs: overrideCabal drv (drv: { setupHaskellDepends = (drv.setupHaskellDepends or []) ++ xs; }); + addSetupDepend = drv: x: compose.addSetupDepend x drv; + addSetupDepends = drv: xs: compose.addSetupDepends xs drv; - enableCabalFlag = drv: x: appendConfigureFlag (removeConfigureFlag drv "-f-${x}") "-f${x}"; - disableCabalFlag = drv: x: appendConfigureFlag (removeConfigureFlag drv "-f${x}") "-f-${x}"; + enableCabalFlag = drv: x: compose.enableCabalFlag x drv; + disableCabalFlag = drv: x: compose.disableCabalFlag x drv; - markBroken = drv: overrideCabal drv (drv: { broken = true; hydraPlatforms = []; }); - unmarkBroken = drv: overrideCabal drv (drv: { broken = false; }); - markBrokenVersion = version: drv: assert drv.version == version; markBroken drv; - markUnbroken = drv: overrideCabal drv (drv: { broken = false; }); + markBroken = compose.markBroken; + unmarkBroken = compose.unmarkBroken; + markBrokenVersion = compose.markBrokenVersion; + markUnbroken = compose.markUnbroken; - enableLibraryProfiling = drv: overrideCabal drv (drv: { enableLibraryProfiling = true; }); - disableLibraryProfiling = drv: overrideCabal drv (drv: { enableLibraryProfiling = false; }); + enableLibraryProfiling = compose.enableLibraryProfiling; + disableLibraryProfiling = compose.disableLibraryProfiling; - enableExecutableProfiling = drv: overrideCabal drv (drv: { enableExecutableProfiling = true; }); - disableExecutableProfiling = drv: overrideCabal drv (drv: { enableExecutableProfiling = false; }); + enableExecutableProfiling = compose.enableExecutableProfiling; + disableExecutableProfiling = compose.disableExecutableProfiling; - enableSharedExecutables = drv: overrideCabal drv (drv: { enableSharedExecutables = true; }); - disableSharedExecutables = drv: overrideCabal drv (drv: { enableSharedExecutables = false; }); + enableSharedExecutables = compose.enableSharedExecutables; + disableSharedExecutables = compose.disableSharedExecutables; - enableSharedLibraries = drv: overrideCabal drv (drv: { enableSharedLibraries = true; }); - disableSharedLibraries = drv: overrideCabal drv (drv: { enableSharedLibraries = false; }); + enableSharedLibraries = compose.enableSharedLibraries; + disableSharedLibraries = compose.disableSharedLibraries; - enableDeadCodeElimination = drv: overrideCabal drv (drv: { enableDeadCodeElimination = true; }); - disableDeadCodeElimination = drv: overrideCabal drv (drv: { enableDeadCodeElimination = false; }); + enableDeadCodeElimination = compose.enableDeadCodeElimination; + disableDeadCodeElimination = compose.disableDeadCodeElimination; - enableStaticLibraries = drv: overrideCabal drv (drv: { enableStaticLibraries = true; }); - disableStaticLibraries = drv: overrideCabal drv (drv: { enableStaticLibraries = false; }); + enableStaticLibraries = compose.enableStaticLibraries; + disableStaticLibraries = compose.disableStaticLibraries; - enableSeparateBinOutput = drv: overrideCabal drv (drv: { enableSeparateBinOutput = true; }); + enableSeparateBinOutput = compose.enableSeparateBinOutput; - appendPatch = drv: x: appendPatches drv [x]; - appendPatches = drv: xs: overrideCabal drv (drv: { patches = (drv.patches or []) ++ xs; }); + appendPatch = drv: x: compose.appendPatch x drv; + appendPatches = drv: xs: compose.appendPatches xs drv; /* Set a specific build target instead of compiling all targets in the package. * For example, imagine we have a .cabal file with a library, and 2 executables "dev" and "server". @@ -203,115 +201,67 @@ rec { * setBuildTarget (callCabal2nix "thePackageName" thePackageSrc {}) "server" * */ - setBuildTargets = drv: xs: overrideCabal drv (drv: { buildTarget = lib.concatStringsSep " " xs; }); - setBuildTarget = drv: x: setBuildTargets drv [x]; + setBuildTargets = drv: xs: compose.setBuildTargets xs drv; + setBuildTarget = drv: x: compose.setBuildTarget x drv; - doHyperlinkSource = drv: overrideCabal drv (drv: { hyperlinkSource = true; }); - dontHyperlinkSource = drv: overrideCabal drv (drv: { hyperlinkSource = false; }); + doHyperlinkSource = compose.doHyperlinkSource; + dontHyperlinkSource = compose.dontHyperlinkSource; - disableHardening = drv: flags: overrideCabal drv (drv: { hardeningDisable = flags; }); + disableHardening = drv: flags: compose.disableHardening flags drv; /* Let Nix strip the binary files. * This removes debugging symbols. */ - doStrip = drv: overrideCabal drv (drv: { dontStrip = false; }); + doStrip = compose.doStrip; /* Stop Nix from stripping the binary files. * This keeps debugging symbols. */ - dontStrip = drv: overrideCabal drv (drv: { dontStrip = true; }); + dontStrip = compose.dontStrip; /* Useful for debugging segfaults with gdb. * This includes dontStrip. */ - enableDWARFDebugging = drv: - # -g: enables debugging symbols - # --disable-*-stripping: tell GHC not to strip resulting binaries - # dontStrip: see above - appendConfigureFlag (dontStrip drv) "--ghc-options=-g --disable-executable-stripping --disable-library-stripping"; + enableDWARFDebugging = compose.enableDWARFDebugging; /* Create a source distribution tarball like those found on hackage, instead of building the package. */ - sdistTarball = pkg: lib.overrideDerivation pkg (drv: { - name = "${drv.pname}-source-${drv.version}"; - # Since we disable the haddock phase, we also need to override the - # outputs since the separate doc output will not be produced. - outputs = ["out"]; - buildPhase = "./Setup sdist"; - haddockPhase = ":"; - checkPhase = ":"; - installPhase = "install -D dist/${drv.pname}-*.tar.gz $out/${drv.pname}-${drv.version}.tar.gz"; - fixupPhase = ":"; - }); + sdistTarball = compose.sdistTarball; /* Create a documentation tarball suitable for uploading to Hackage instead of building the package. */ - documentationTarball = pkg: - pkgs.lib.overrideDerivation pkg (drv: { - name = "${drv.name}-docs"; - # Like sdistTarball, disable the "doc" output here. - outputs = [ "out" ]; - buildPhase = '' - runHook preHaddock - ./Setup haddock --for-hackage - runHook postHaddock - ''; - haddockPhase = ":"; - checkPhase = ":"; - installPhase = '' - runHook preInstall - mkdir -p "$out" - tar --format=ustar \ - -czf "$out/${drv.name}-docs.tar.gz" \ - -C dist/doc/html "${drv.name}-docs" - runHook postInstall - ''; - }); + documentationTarball = compose.documentationTarball; /* Use the gold linker. It is a linker for ELF that is designed "to run as fast as possible on modern systems" */ - linkWithGold = drv : appendConfigureFlag drv - "--ghc-option=-optl-fuse-ld=gold --ld-option=-fuse-ld=gold --with-ld=ld.gold"; + linkWithGold = compose.linkWithGold; /* link executables statically against haskell libs to reduce closure size */ - justStaticExecutables = drv: overrideCabal drv (drv: { - enableSharedExecutables = false; - enableLibraryProfiling = false; - isLibrary = false; - doHaddock = false; - postFixup = "rm -rf $out/lib $out/nix-support $out/share/doc"; - }); + justStaticExecutables = compose.justStaticExecutables; /* Build a source distribution tarball instead of using the source files directly. The effect is that the package is built as if it were published on hackage. This can be used as a test for the source distribution, assuming the build fails when packaging mistakes are in the cabal file. */ - buildFromSdist = pkg: overrideCabal pkg (drv: { - src = "${sdistTarball pkg}/${pkg.pname}-${pkg.version}.tar.gz"; - - # Revising and jailbreaking the cabal file has been handled in sdistTarball - revision = null; - editedCabalFile = null; - jailbreak = false; - }); + buildFromSdist = compose.buildFromSdist; /* Build the package in a strict way to uncover potential problems. This includes buildFromSdist and failOnAllWarnings. */ - buildStrictly = pkg: buildFromSdist (failOnAllWarnings pkg); + buildStrictly = compose.buildStrictly; /* Disable core optimizations, significantly speeds up build time */ - disableOptimization = pkg: appendConfigureFlag pkg "--disable-optimization"; + disableOptimization = compose.disableOptimization; /* Turn on most of the compiler warnings and fail the build if any of them occur. */ - failOnAllWarnings = drv: appendConfigureFlag drv "--ghc-option=-Wall --ghc-option=-Werror"; + failOnAllWarnings = compose.failOnAllWarnings; /* Add a post-build check to verify that dependencies declared in the cabal file are actually used. @@ -320,54 +270,33 @@ rec { of this check and a list of ignored package names that would otherwise cause false alarms. */ - checkUnusedPackages = - { ignoreEmptyImports ? false - , ignoreMainModule ? false - , ignorePackages ? [] - } : drv : - overrideCabal (appendConfigureFlag drv "--ghc-option=-ddump-minimal-imports") (_drv: { - postBuild = with lib; - let args = concatStringsSep " " ( - optional ignoreEmptyImports "--ignore-empty-imports" ++ - optional ignoreMainModule "--ignore-main-module" ++ - map (pkg: "--ignore-package ${pkg}") ignorePackages - ); - in "${pkgs.haskellPackages.packunused}/bin/packunused" + - optionalString (args != "") " ${args}"; - }); + checkUnusedPackages = compose.checkUnusedPackages; - buildStackProject = pkgs.callPackage ./generic-stack-builder.nix { }; + buildStackProject = compose.buildStackProject; /* Add a dummy command to trigger a build despite an equivalent earlier build that is present in the store or cache. */ - triggerRebuild = drv: i: overrideCabal drv (drv: { postUnpack = ": trigger rebuild ${toString i}"; }); + triggerRebuild = drv: i: compose.triggerRebuild i drv; /* Override the sources for the package and optionaly the version. This also takes of removing editedCabalFile. */ - overrideSrc = drv: { src, version ? drv.version }: - overrideCabal drv (_: { inherit src version; editedCabalFile = null; }); + overrideSrc = drv: src: compose.overrideSrc src drv; # Get all of the build inputs of a haskell package, divided by category. - getBuildInputs = p: p.getBuildInputs; + getBuildInputs = compose.getBuildInputs; # Extract the haskell build inputs of a haskell package. # This is useful to build environments for developing on that # package. - getHaskellBuildInputs = p: (getBuildInputs p).haskellBuildInputs; + getHaskellBuildInputs = compose.getHaskellBuildInputs; # Under normal evaluation, simply return the original package. Under # nix-shell evaluation, return a nix-shell optimized environment. - shellAware = p: if lib.inNixShell then p.env else p; + shellAware = compose.shellAware; - ghcInfo = ghc: - rec { isCross = (ghc.cross or null) != null; - isGhcjs = ghc.isGhcjs or false; - nativeGhc = if isCross || isGhcjs - then ghc.bootPkgs.ghc - else ghc; - }; + ghcInfo = compose.ghcInfo; ### mkDerivation helpers # These allow external users of a haskell package to extract @@ -379,35 +308,15 @@ rec { # an example of this. # Some information about which phases should be run. - controlPhases = ghc: let inherit (ghcInfo ghc) isCross; in - { doCheck ? !isCross && (lib.versionOlder "7.4" ghc.version) - , doBenchmark ? false - , ... - }: { inherit doCheck doBenchmark; }; + controlPhases = compose.controlPhases; # Utility to convert a directory full of `cabal2nix`-generated files into a # package override set # # packagesFromDirectory : { directory : Directory, ... } -> HaskellPackageOverrideSet - packagesFromDirectory = - { directory, ... }: + packagesFromDirectory = compose.packagesFromDirectory; - self: super: - let - haskellPaths = builtins.attrNames (builtins.readDir directory); - - toKeyVal = file: { - name = builtins.replaceStrings [ ".nix" ] [ "" ] file; - - value = self.callPackage (directory + "/${file}") { }; - }; - - in - builtins.listToAttrs (map toKeyVal haskellPaths); - - addOptparseApplicativeCompletionScripts = exeName: pkg: - builtins.trace "addOptparseApplicativeCompletionScripts is deprecated in favor of generateOptparseApplicativeCompletion. Please change ${pkg.name} to use the latter or its plural form." - (generateOptparseApplicativeCompletion exeName pkg); + addOptparseApplicativeCompletionScripts = compose.addOptparseApplicativeCompletionScripts; /* Modify a Haskell package to add shell completion scripts for the @@ -422,23 +331,7 @@ rec { command: name of an executable pkg: Haskell package that builds the executables */ - generateOptparseApplicativeCompletion = exeName: pkg: overrideCabal pkg (drv: { - postInstall = (drv.postInstall or "") + '' - bashCompDir="''${!outputBin}/share/bash-completion/completions" - zshCompDir="''${!outputBin}/share/zsh/vendor-completions" - fishCompDir="''${!outputBin}/share/fish/vendor_completions.d" - mkdir -p "$bashCompDir" "$zshCompDir" "$fishCompDir" - "''${!outputBin}/bin/${exeName}" --bash-completion-script "''${!outputBin}/bin/${exeName}" >"$bashCompDir/${exeName}" - "''${!outputBin}/bin/${exeName}" --zsh-completion-script "''${!outputBin}/bin/${exeName}" >"$zshCompDir/_${exeName}" - "''${!outputBin}/bin/${exeName}" --fish-completion-script "''${!outputBin}/bin/${exeName}" >"$fishCompDir/${exeName}.fish" - - # Sanity check - grep -F ${exeName} <$bashCompDir/${exeName} >/dev/null || { - echo 'Could not find ${exeName} in completion script.' - exit 1 - } - ''; - }); + generateOptparseApplicativeCompletion = compose.generateOptparseApplicativeCompletion; /* Modify a Haskell package to add shell completion scripts for the @@ -453,13 +346,10 @@ rec { commands: name of an executable pkg: Haskell package that builds the executables */ - generateOptparseApplicativeCompletions = commands: pkg: - pkgs.lib.foldr generateOptparseApplicativeCompletion pkg commands; + generateOptparseApplicativeCompletions = compose.generateOptparseApplicativeCompletions; # Don't fail at configure time if there are multiple versions of the # same package in the (recursive) dependencies of the package being # built. Will delay failures, if any, to compile time. - allowInconsistentDependencies = drv: overrideCabal drv (drv: { - allowInconsistentDependencies = true; - }); + allowInconsistentDependencies = compose.allowInconsistentDependencies; } diff --git a/pkgs/development/haskell-modules/lib/compose.nix b/pkgs/development/haskell-modules/lib/compose.nix new file mode 100644 index 000000000000..d84c804272db --- /dev/null +++ b/pkgs/development/haskell-modules/lib/compose.nix @@ -0,0 +1,466 @@ +# TODO(@Ericson2314): Remove `pkgs` param, which is only used for +# `buildStackProject`, `justStaticExecutables` and `checkUnusedPackages` +{ pkgs, lib }: + +rec { + + /* This function takes a file like `hackage-packages.nix` and constructs + a full package set out of that. + */ + makePackageSet = import ../make-package-set.nix; + + /* The function overrideCabal lets you alter the arguments to the + mkDerivation function. + + Example: + + First, note how the aeson package is constructed in hackage-packages.nix: + + "aeson" = callPackage ({ mkDerivation, attoparsec, <snip> + }: + mkDerivation { + pname = "aeson"; + <snip> + homepage = "https://github.com/bos/aeson"; + }) + + The mkDerivation function of haskellPackages will take care of putting + the homepage in the right place, in meta. + + > haskellPackages.aeson.meta.homepage + "https://github.com/bos/aeson" + + > x = haskell.lib.compose.overrideCabal (old: { homepage = old.homepage + "#readme"; }) haskellPackages.aeson + > x.meta.homepage + "https://github.com/bos/aeson#readme" + + */ + overrideCabal = f: drv: (drv.override (args: args // { + mkDerivation = drv: (args.mkDerivation drv).override f; + })) // { + overrideScope = scope: overrideCabal f (drv.overrideScope scope); + }; + + # : Map Name (Either Path VersionNumber) -> HaskellPackageOverrideSet + # Given a set whose values are either paths or version strings, produces + # a package override set (i.e. (self: super: { etc. })) that sets + # the packages named in the input set to the corresponding versions + packageSourceOverrides = + overrides: self: super: pkgs.lib.mapAttrs (name: src: + let isPath = x: builtins.substring 0 1 (toString x) == "/"; + generateExprs = if isPath src + then self.callCabal2nix + else self.callHackage; + in generateExprs name src {}) overrides; + + /* doCoverage modifies a haskell package to enable the generation + and installation of a coverage report. + + See https://wiki.haskell.org/Haskell_program_coverage + */ + doCoverage = overrideCabal (drv: { doCoverage = true; }); + + /* dontCoverage modifies a haskell package to disable the generation + and installation of a coverage report. + */ + dontCoverage = overrideCabal (drv: { doCoverage = false; }); + + /* doHaddock modifies a haskell package to enable the generation and + installation of API documentation from code comments using the + haddock tool. + */ + doHaddock = overrideCabal (drv: { doHaddock = true; }); + + /* dontHaddock modifies a haskell package to disable the generation and + installation of API documentation from code comments using the + haddock tool. + */ + dontHaddock = overrideCabal (drv: { doHaddock = false; }); + + /* doJailbreak enables the removal of version bounds from the cabal + file. You may want to avoid this function. + + This is useful when a package reports that it can not be built + due to version mismatches. In some cases, removing the version + bounds entirely is an easy way to make a package build, but at + the risk of breaking software in non-obvious ways now or in the + future. + + Instead of jailbreaking, you can patch the cabal file. + + Note that jailbreaking at this time, doesn't lift bounds on + conditional branches. + https://github.com/peti/jailbreak-cabal/issues/7 has further details. + + */ + doJailbreak = overrideCabal (drv: { jailbreak = true; }); + + /* dontJailbreak restores the use of the version bounds the check + the use of dependencies in the package description. + */ + dontJailbreak = overrideCabal (drv: { jailbreak = false; }); + + /* doCheck enables dependency checking, compilation and execution + of test suites listed in the package description file. + */ + doCheck = overrideCabal (drv: { doCheck = true; }); + /* dontCheck disables dependency checking, compilation and execution + of test suites listed in the package description file. + */ + dontCheck = overrideCabal (drv: { doCheck = false; }); + + /* doBenchmark enables dependency checking, compilation and execution + for benchmarks listed in the package description file. + */ + doBenchmark = overrideCabal (drv: { doBenchmark = true; }); + /* dontBenchmark disables dependency checking, compilation and execution + for benchmarks listed in the package description file. + */ + dontBenchmark = overrideCabal (drv: { doBenchmark = false; }); + + /* doDistribute enables the distribution of binaries for the package + via hydra. + */ + doDistribute = overrideCabal (drv: { hydraPlatforms = drv.platforms or ["i686-linux" "x86_64-linux" "x86_64-darwin"]; }); + /* dontDistribute disables the distribution of binaries for the package + via hydra. + */ + dontDistribute = overrideCabal (drv: { hydraPlatforms = []; }); + + /* appendConfigureFlag adds a single argument that will be passed to the + cabal configure command, after the arguments that have been defined + in the initial declaration or previous overrides. + + Example: + + > haskell.lib.compose.appendConfigureFlag "--profiling-detail=all-functions" haskellPackages.servant + */ + appendConfigureFlag = x: appendConfigureFlags [x]; + appendConfigureFlags = xs: overrideCabal (drv: { configureFlags = (drv.configureFlags or []) ++ xs; }); + + appendBuildFlag = x: overrideCabal (drv: { buildFlags = (drv.buildFlags or []) ++ [x]; }); + appendBuildFlags = xs: overrideCabal (drv: { buildFlags = (drv.buildFlags or []) ++ xs; }); + + /* removeConfigureFlag drv x is a Haskell package like drv, but with + all cabal configure arguments that are equal to x removed. + + > haskell.lib.compose.removeConfigureFlag "--verbose" haskellPackages.servant + */ + removeConfigureFlag = x: overrideCabal (drv: { configureFlags = lib.remove x (drv.configureFlags or []); }); + + addBuildTool = x: addBuildTools [x]; + addBuildTools = xs: overrideCabal (drv: { buildTools = (drv.buildTools or []) ++ xs; }); + + addExtraLibrary = x: addExtraLibraries [x]; + addExtraLibraries = xs: overrideCabal (drv: { extraLibraries = (drv.extraLibraries or []) ++ xs; }); + + addBuildDepend = x: addBuildDepends [x]; + addBuildDepends = xs: overrideCabal (drv: { buildDepends = (drv.buildDepends or []) ++ xs; }); + + addTestToolDepend = x: addTestToolDepends [x]; + addTestToolDepends = xs: overrideCabal (drv: { testToolDepends = (drv.testToolDepends or []) ++ xs; }); + + addPkgconfigDepend = x: addPkgconfigDepends [x]; + addPkgconfigDepends = xs: overrideCabal (drv: { pkg-configDepends = (drv.pkg-configDepends or []) ++ xs; }); + + addSetupDepend = x: addSetupDepends [x]; + addSetupDepends = xs: overrideCabal (drv: { setupHaskellDepends = (drv.setupHaskellDepends or []) ++ xs; }); + + enableCabalFlag = x: drv: appendConfigureFlag "-f${x}" (removeConfigureFlag "-f-${x}" drv); + disableCabalFlag = x: drv: appendConfigureFlag "-f-${x}" (removeConfigureFlag "-f${x}" drv); + + markBroken = overrideCabal (drv: { broken = true; hydraPlatforms = []; }); + unmarkBroken = overrideCabal (drv: { broken = false; }); + markBrokenVersion = version: drv: assert drv.version == version; markBroken drv; + markUnbroken = overrideCabal (drv: { broken = false; }); + + enableLibraryProfiling = overrideCabal (drv: { enableLibraryProfiling = true; }); + disableLibraryProfiling = overrideCabal (drv: { enableLibraryProfiling = false; }); + + enableExecutableProfiling = overrideCabal (drv: { enableExecutableProfiling = true; }); + disableExecutableProfiling = overrideCabal (drv: { enableExecutableProfiling = false; }); + + enableSharedExecutables = overrideCabal (drv: { enableSharedExecutables = true; }); + disableSharedExecutables = overrideCabal (drv: { enableSharedExecutables = false; }); + + enableSharedLibraries = overrideCabal (drv: { enableSharedLibraries = true; }); + disableSharedLibraries = overrideCabal (drv: { enableSharedLibraries = false; }); + + enableDeadCodeElimination = overrideCabal (drv: { enableDeadCodeElimination = true; }); + disableDeadCodeElimination = overrideCabal (drv: { enableDeadCodeElimination = false; }); + + enableStaticLibraries = overrideCabal (drv: { enableStaticLibraries = true; }); + disableStaticLibraries = overrideCabal (drv: { enableStaticLibraries = false; }); + + enableSeparateBinOutput = overrideCabal (drv: { enableSeparateBinOutput = true; }); + + appendPatch = x: appendPatches [x]; + appendPatches = xs: overrideCabal (drv: { patches = (drv.patches or []) ++ xs; }); + + /* Set a specific build target instead of compiling all targets in the package. + * For example, imagine we have a .cabal file with a library, and 2 executables "dev" and "server". + * We can build only "server" and not wait on the compilation of "dev" by using setBuildTarget as follows: + * + * > setBuildTarget "server" (callCabal2nix "thePackageName" thePackageSrc {}) + * + */ + setBuildTargets = xs: overrideCabal (drv: { buildTarget = lib.concatStringsSep " " xs; }); + setBuildTarget = x: setBuildTargets [x]; + + doHyperlinkSource = overrideCabal (drv: { hyperlinkSource = true; }); + dontHyperlinkSource = overrideCabal (drv: { hyperlinkSource = false; }); + + disableHardening = flags: overrideCabal (drv: { hardeningDisable = flags; }); + + /* Let Nix strip the binary files. + * This removes debugging symbols. + */ + doStrip = overrideCabal (drv: { dontStrip = false; }); + + /* Stop Nix from stripping the binary files. + * This keeps debugging symbols. + */ + dontStrip = overrideCabal (drv: { dontStrip = true; }); + + /* Useful for debugging segfaults with gdb. + * This includes dontStrip. + */ + enableDWARFDebugging = drv: + # -g: enables debugging symbols + # --disable-*-stripping: tell GHC not to strip resulting binaries + # dontStrip: see above + appendConfigureFlag "--ghc-options=-g --disable-executable-stripping --disable-library-stripping" (dontStrip drv); + + /* Create a source distribution tarball like those found on hackage, + instead of building the package. + */ + sdistTarball = pkg: lib.overrideDerivation pkg (drv: { + name = "${drv.pname}-source-${drv.version}"; + # Since we disable the haddock phase, we also need to override the + # outputs since the separate doc output will not be produced. + outputs = ["out"]; + buildPhase = "./Setup sdist"; + haddockPhase = ":"; + checkPhase = ":"; + installPhase = "install -D dist/${drv.pname}-*.tar.gz $out/${drv.pname}-${drv.version}.tar.gz"; + fixupPhase = ":"; + }); + + /* Create a documentation tarball suitable for uploading to Hackage instead + of building the package. + */ + documentationTarball = pkg: + pkgs.lib.overrideDerivation pkg (drv: { + name = "${drv.name}-docs"; + # Like sdistTarball, disable the "doc" output here. + outputs = [ "out" ]; + buildPhase = '' + runHook preHaddock + ./Setup haddock --for-hackage + runHook postHaddock + ''; + haddockPhase = ":"; + checkPhase = ":"; + installPhase = '' + runHook preInstall + mkdir -p "$out" + tar --format=ustar \ + -czf "$out/${drv.name}-docs.tar.gz" \ + -C dist/doc/html "${drv.name}-docs" + runHook postInstall + ''; + }); + + /* Use the gold linker. It is a linker for ELF that is designed + "to run as fast as possible on modern systems" + */ + linkWithGold = appendConfigureFlag + "--ghc-option=-optl-fuse-ld=gold --ld-option=-fuse-ld=gold --with-ld=ld.gold"; + + /* link executables statically against haskell libs to reduce + closure size + */ + justStaticExecutables = overrideCabal (drv: { + enableSharedExecutables = false; + enableLibraryProfiling = false; + isLibrary = false; + doHaddock = false; + postFixup = "rm -rf $out/lib $out/nix-support $out/share/doc"; + }); + + /* Build a source distribution tarball instead of using the source files + directly. The effect is that the package is built as if it were published + on hackage. This can be used as a test for the source distribution, + assuming the build fails when packaging mistakes are in the cabal file. + */ + buildFromSdist = pkg: overrideCabal (drv: { + src = "${sdistTarball pkg}/${pkg.pname}-${pkg.version}.tar.gz"; + + # Revising and jailbreaking the cabal file has been handled in sdistTarball + revision = null; + editedCabalFile = null; + jailbreak = false; + }) pkg; + + /* Build the package in a strict way to uncover potential problems. + This includes buildFromSdist and failOnAllWarnings. + */ + buildStrictly = pkg: buildFromSdist (failOnAllWarnings pkg); + + /* Disable core optimizations, significantly speeds up build time */ + disableOptimization = appendConfigureFlag "--disable-optimization"; + + /* Turn on most of the compiler warnings and fail the build if any + of them occur. */ + failOnAllWarnings = appendConfigureFlag "--ghc-option=-Wall --ghc-option=-Werror"; + + /* Add a post-build check to verify that dependencies declared in + the cabal file are actually used. + + The first attrset argument can be used to configure the strictness + of this check and a list of ignored package names that would otherwise + cause false alarms. + */ + checkUnusedPackages = + { ignoreEmptyImports ? false + , ignoreMainModule ? false + , ignorePackages ? [] + } : drv : + overrideCabal (_drv: { + postBuild = with lib; + let args = concatStringsSep " " ( + optional ignoreEmptyImports "--ignore-empty-imports" ++ + optional ignoreMainModule "--ignore-main-module" ++ + map (pkg: "--ignore-package ${pkg}") ignorePackages + ); + in "${pkgs.haskellPackages.packunused}/bin/packunused" + + optionalString (args != "") " ${args}"; + }) (appendConfigureFlag "--ghc-option=-ddump-minimal-imports" drv); + + buildStackProject = pkgs.callPackage ../generic-stack-builder.nix { }; + + /* Add a dummy command to trigger a build despite an equivalent + earlier build that is present in the store or cache. + */ + triggerRebuild = i: overrideCabal (drv: { postUnpack = ": trigger rebuild ${toString i}"; }); + + /* Override the sources for the package and optionaly the version. + This also takes of removing editedCabalFile. + */ + overrideSrc = { src, version ? null }: drv: + overrideCabal (_: { inherit src; version = if version == null then drv.version else version; editedCabalFile = null; }) drv; + + # Get all of the build inputs of a haskell package, divided by category. + getBuildInputs = p: p.getBuildInputs; + + # Extract the haskell build inputs of a haskell package. + # This is useful to build environments for developing on that + # package. + getHaskellBuildInputs = p: (getBuildInputs p).haskellBuildInputs; + + # Under normal evaluation, simply return the original package. Under + # nix-shell evaluation, return a nix-shell optimized environment. + shellAware = p: if lib.inNixShell then p.env else p; + + ghcInfo = ghc: + rec { isCross = (ghc.cross or null) != null; + isGhcjs = ghc.isGhcjs or false; + nativeGhc = if isCross || isGhcjs + then ghc.bootPkgs.ghc + else ghc; + }; + + ### mkDerivation helpers + # These allow external users of a haskell package to extract + # information about how it is built in the same way that the + # generic haskell builder does, by reusing the same functions. + # Each function here has the same interface as mkDerivation and thus + # can be called for a given package simply by overriding the + # mkDerivation argument it used. See getHaskellBuildInputs above for + # an example of this. + + # Some information about which phases should be run. + controlPhases = ghc: let inherit (ghcInfo ghc) isCross; in + { doCheck ? !isCross && (lib.versionOlder "7.4" ghc.version) + , doBenchmark ? false + , ... + }: { inherit doCheck doBenchmark; }; + + # Utility to convert a directory full of `cabal2nix`-generated files into a + # package override set + # + # packagesFromDirectory : { directory : Directory, ... } -> HaskellPackageOverrideSet + packagesFromDirectory = + { directory, ... }: + + self: super: + let + haskellPaths = builtins.attrNames (builtins.readDir directory); + + toKeyVal = file: { + name = builtins.replaceStrings [ ".nix" ] [ "" ] file; + + value = self.callPackage (directory + "/${file}") { }; + }; + + in + builtins.listToAttrs (map toKeyVal haskellPaths); + + addOptparseApplicativeCompletionScripts = exeName: pkg: + builtins.trace "addOptparseApplicativeCompletionScripts is deprecated in favor of generateOptparseApplicativeCompletion. Please change ${pkg.name} to use the latter or its plural form." + (generateOptparseApplicativeCompletion exeName pkg); + + /* + Modify a Haskell package to add shell completion scripts for the + given executable produced by it. These completion scripts will be + picked up automatically if the resulting derivation is installed, + e.g. by `nix-env -i`. + + Invocation: + generateOptparseApplicativeCompletion command pkg + + + command: name of an executable + pkg: Haskell package that builds the executables + */ + generateOptparseApplicativeCompletion = exeName: overrideCabal (drv: { + postInstall = (drv.postInstall or "") + '' + bashCompDir="''${!outputBin}/share/bash-completion/completions" + zshCompDir="''${!outputBin}/share/zsh/vendor-completions" + fishCompDir="''${!outputBin}/share/fish/vendor_completions.d" + mkdir -p "$bashCompDir" "$zshCompDir" "$fishCompDir" + "''${!outputBin}/bin/${exeName}" --bash-completion-script "''${!outputBin}/bin/${exeName}" >"$bashCompDir/${exeName}" + "''${!outputBin}/bin/${exeName}" --zsh-completion-script "''${!outputBin}/bin/${exeName}" >"$zshCompDir/_${exeName}" + "''${!outputBin}/bin/${exeName}" --fish-completion-script "''${!outputBin}/bin/${exeName}" >"$fishCompDir/${exeName}.fish" + + # Sanity check + grep -F ${exeName} <$bashCompDir/${exeName} >/dev/null || { + echo 'Could not find ${exeName} in completion script.' + exit 1 + } + ''; + }); + + /* + Modify a Haskell package to add shell completion scripts for the + given executables produced by it. These completion scripts will be + picked up automatically if the resulting derivation is installed, + e.g. by `nix-env -i`. + + Invocation: + generateOptparseApplicativeCompletions commands pkg + + + commands: name of an executable + pkg: Haskell package that builds the executables + */ + generateOptparseApplicativeCompletions = commands: pkg: + pkgs.lib.foldr generateOptparseApplicativeCompletion pkg commands; + + # Don't fail at configure time if there are multiple versions of the + # same package in the (recursive) dependencies of the package being + # built. Will delay failures, if any, to compile time. + allowInconsistentDependencies = overrideCabal (drv: { + allowInconsistentDependencies = true; + }); +} diff --git a/pkgs/development/haskell-modules/make-package-set.nix b/pkgs/development/haskell-modules/make-package-set.nix index b79aace9e3b7..62bcf7dc84c3 100644 --- a/pkgs/development/haskell-modules/make-package-set.nix +++ b/pkgs/development/haskell-modules/make-package-set.nix @@ -49,23 +49,23 @@ let nodejs = buildPackages.nodejs-slim; inherit (self) buildHaskellPackages ghc ghcWithHoogle ghcWithPackages; inherit (self.buildHaskellPackages) jailbreak-cabal; - hscolour = overrideCabal self.buildHaskellPackages.hscolour (drv: { + hscolour = overrideCabal (drv: { isLibrary = false; doHaddock = false; hyperlinkSource = false; # Avoid depending on hscolour for this build. postFixup = "rm -rf $out/lib $out/share $out/nix-support"; - }); - cpphs = overrideCabal (self.cpphs.overrideScope (self: super: { + }) self.buildHaskellPackages.hscolour; + cpphs = overrideCabal (drv: { + isLibrary = false; + postFixup = "rm -rf $out/lib $out/share $out/nix-support"; + }) (self.cpphs.overrideScope (self: super: { mkDerivation = drv: super.mkDerivation (drv // { enableSharedExecutables = false; enableSharedLibraries = false; doHaddock = false; useCpphs = false; }); - })) (drv: { - isLibrary = false; - postFixup = "rm -rf $out/lib $out/share $out/nix-support"; - }); + })); }; mkDerivation = makeOverridable mkDerivationImpl; @@ -159,7 +159,7 @@ let # (requiring it to be frequently rebuilt), which can be an # annoyance. callPackageKeepDeriver = src: args: - overrideCabal (self.callPackage src args) (orig: { + overrideCabal (orig: { preConfigure = '' # Generated from ${src} ${orig.preConfigure or ""} @@ -171,7 +171,7 @@ let # cabal2nixDeriver field. cabal2nixDeriver = src; }; - }); + }) (self.callPackage src args); in package-set { inherit pkgs lib callPackage; } self // { @@ -205,7 +205,7 @@ in package-set { inherit pkgs lib callPackage; } self // { callCabal2nixWithOptions = name: src: extraCabal2nixOptions: args: let filter = path: type: - pkgs.lib.hasSuffix "${name}.cabal" path || + pkgs.lib.hasSuffix ".cabal" path || baseNameOf path == "package.yaml"; expr = self.haskellSrc2nix { inherit name extraCabal2nixOptions; @@ -213,9 +213,9 @@ in package-set { inherit pkgs lib callPackage; } self // { then pkgs.lib.cleanSourceWith { inherit src filter; } else src; }; - in overrideCabal (callPackageKeepDeriver expr args) (orig: { + in overrideCabal (orig: { inherit src; - }); + }) (callPackageKeepDeriver expr args); callCabal2nix = name: src: args: self.callCabal2nixWithOptions name src "" args; @@ -294,7 +294,7 @@ in package-set { inherit pkgs lib callPackage; } self // { # # # default.nix # with import <nixpkgs> {}; - # haskellPackages.extend (haskell.lib.packageSourceOverrides { + # haskellPackages.extend (haskell.lib.compose.packageSourceOverrides { # frontend = ./frontend; # backend = ./backend; # common = ./common; diff --git a/pkgs/development/interpreters/acl2/0001-Fix-some-paths-for-Nix-build.patch b/pkgs/development/interpreters/acl2/0001-Fix-some-paths-for-Nix-build.patch index ac107414a92d..7726f17b41ed 100644 --- a/pkgs/development/interpreters/acl2/0001-Fix-some-paths-for-Nix-build.patch +++ b/pkgs/development/interpreters/acl2/0001-Fix-some-paths-for-Nix-build.patch @@ -102,7 +102,7 @@ index e5db28645..65eb818a1 100644 - "libcrypto.dylib" ;; default system libcrypto, which may have insufficient crypto - "/usr/lib/libcrypto.dylib")) - (:cygwin (:or "cygcrypto-1.1.dll" "cygcrypto-1.0.0.dll"))) -+ (t "@openssl@/lib/libcrypto.so")) ++ (t "@libcrypto@")) (cffi:define-foreign-library libssl - (:windows (:or #+(and windows x86-64) "libssl-1_1-x64.dll" @@ -145,7 +145,7 @@ index e5db28645..65eb818a1 100644 - "libssl.so")) - (:cygwin (:or "cygssl-1.1.dll" "cygssl-1.0.0.dll")) - (t (:default "libssl3"))) -+ (t "@openssl@/lib/libssl.so")) ++ (t "@libssl@")) (unless (member :cl+ssl-foreign-libs-already-loaded *features*) diff --git a/pkgs/development/interpreters/acl2/default.nix b/pkgs/development/interpreters/acl2/default.nix index 9436cf58e427..a1b59b8bf69d 100644 --- a/pkgs/development/interpreters/acl2/default.nix +++ b/pkgs/development/interpreters/acl2/default.nix @@ -1,5 +1,5 @@ { lib, stdenv, callPackage, fetchFromGitHub, runCommandLocal, makeWrapper, substituteAll -, sbcl, bash, which, perl, nettools +, sbcl, bash, which, perl, hostname , openssl, glucose, minisat, abc-verifier, z3, python , certifyBooks ? true } @ args: @@ -36,7 +36,8 @@ in stdenv.mkDerivation rec { patches = [(substituteAll { src = ./0001-Fix-some-paths-for-Nix-build.patch; libipasir = "${libipasir}/lib/${libipasir.libname}"; - openssl = openssl.out; + libssl = "${openssl.out}/lib/libssl${stdenv.hostPlatform.extensions.sharedLibrary}"; + libcrypto = "${openssl.out}/lib/libcrypto${stdenv.hostPlatform.extensions.sharedLibrary}"; })]; buildInputs = [ @@ -44,7 +45,7 @@ in stdenv.mkDerivation rec { sbcl ] ++ lib.optionals certifyBooks [ # To build community books, we need Perl and a couple of utilities: - which perl nettools makeWrapper + which perl hostname makeWrapper # Some of the books require one or more of these external tools: openssl.out glucose minisat abc-verifier libipasir z3 (python.withPackages (ps: [ ps.z3 ])) diff --git a/pkgs/development/interpreters/bqn/cbqn/default.nix b/pkgs/development/interpreters/bqn/cbqn/default.nix index 6bdcca127458..44d63ace738b 100644 --- a/pkgs/development/interpreters/bqn/cbqn/default.nix +++ b/pkgs/development/interpreters/bqn/cbqn/default.nix @@ -11,21 +11,21 @@ let name = "cbqn-bytecode-files"; owner = "dzaima"; repo = "CBQN"; - rev = "4d23479cdbd5ac6eb512c376ade58077b814b2b7"; - hash = "sha256-MTvg4lOB26bqvJTqV71p4Y4qDjTYaOE40Jk4Sle/hsY="; + rev = "db686e89d4d2e9bfac3dddf306dff890135b2de1"; + hash = "sha256-RJ751jCsAGjqQx3V5S5Uc611n+/TBs6G2o0q26x98NM="; }; in assert genBytecode -> ((bqn-path != null) && (mbqn-source != null)); stdenv.mkDerivation rec { pname = "cbqn" + lib.optionalString (!genBytecode) "-standalone"; - version = "0.pre+date=2021-10-20"; + version = "0.pre+date=2021-11-06"; src = fetchFromGitHub { owner = "dzaima"; repo = "CBQN"; - rev = "f50b8ab503d05cccb6ff61df52f2625df3292a9e"; - hash = "sha256-pxToXVIKYS9P2TnGMGmKfJmAP54GVPVls9bm9tmS21s="; + rev = "cd866e1e45ce0f22bfacd25565ab912c06cb040f"; + hash = "sha256-XuowrGDgrttRL/SY5si0nqHMKEidSNrQuquxNdBCW8o="; }; dontConfigure = true; diff --git a/pkgs/development/interpreters/bqn/mlochbaum-bqn/default.nix b/pkgs/development/interpreters/bqn/mlochbaum-bqn/default.nix index 86a07e8e9846..fd0ff51c0eb1 100644 --- a/pkgs/development/interpreters/bqn/mlochbaum-bqn/default.nix +++ b/pkgs/development/interpreters/bqn/mlochbaum-bqn/default.nix @@ -7,13 +7,13 @@ stdenvNoCC.mkDerivation rec { pname = "bqn"; - version = "0.pre+date=2021-10-21"; + version = "0.pre+date=2021-11-08"; src = fetchFromGitHub { owner = "mlochbaum"; repo = "BQN"; - rev = "e4edda2a8cf2309b77808cc749a8e6ff8a282b17"; - hash = "sha256-wCpwFV9AI0bfDQX9ARWHkTICmNnRu4vBACXBTM/RNeM="; + rev = "5c68173276c1c1b136a7eda3ad8f4423ab0ee9d0"; + hash = "sha256-e0P1I8I/J41Hk7Edb4uKCdx30Azkiheq014kSZzJ8yg="; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/development/interpreters/clisp/default.nix b/pkgs/development/interpreters/clisp/default.nix index 566d16179b57..137ebbccbc71 100644 --- a/pkgs/development/interpreters/clisp/default.nix +++ b/pkgs/development/interpreters/clisp/default.nix @@ -82,6 +82,10 @@ stdenv.mkDerivation rec { cd builddir ''; + # Fails to build in parallel due to missing gnulib header dependency used in charstrg.d: + # ../src/charstrg.d:319:10: fatal error: uniwidth.h: No such file or directory + enableParallelBuilding = false; + postInstall = lib.optionalString (withModules != []) (''./clisp-link add "$out"/lib/clisp*/base "$(dirname "$out"/lib/clisp*/base)"/full'' diff --git a/pkgs/development/interpreters/clojure/default.nix b/pkgs/development/interpreters/clojure/default.nix index 2a44ca4161c3..a412aafe2ac0 100644 --- a/pkgs/development/interpreters/clojure/default.nix +++ b/pkgs/development/interpreters/clojure/default.nix @@ -2,12 +2,12 @@ stdenv.mkDerivation rec { pname = "clojure"; - version = "1.10.3.1013"; + version = "1.10.3.1029"; src = fetchurl { # https://clojure.org/releases/tools url = "https://download.clojure.org/install/clojure-tools-${version}.tar.gz"; - sha256 = "EmIdcQ7ANbDjOBUX/UQwdd1C+JzeCZaC4XaNdW49E/A="; + sha256 = "14c08xva1r6sl3h78vhckwx5dd8kqwi7457prygh9330b7r8caa2"; }; nativeBuildInputs = [ diff --git a/pkgs/development/interpreters/dhall/build-dhall-package.nix b/pkgs/development/interpreters/dhall/build-dhall-package.nix index 86797e9f136f..f58546a9d3c6 100644 --- a/pkgs/development/interpreters/dhall/build-dhall-package.nix +++ b/pkgs/development/interpreters/dhall/build-dhall-package.nix @@ -48,7 +48,7 @@ let # HTTP support is disabled in order to force that HTTP dependencies are built # using Nix instead of using Dhall's support for HTTP imports. - dhallNoHTTP = haskell.lib.appendConfigureFlag dhall "-f-with-http"; + dhallNoHTTP = haskell.lib.compose.appendConfigureFlag "-f-with-http" dhall; file = writeText "${name}.dhall" code; diff --git a/pkgs/development/interpreters/dhall/build-dhall-url.nix b/pkgs/development/interpreters/dhall/build-dhall-url.nix new file mode 100644 index 000000000000..766fe3c1c2e3 --- /dev/null +++ b/pkgs/development/interpreters/dhall/build-dhall-url.nix @@ -0,0 +1,96 @@ +{ cacert, dhall, dhall-docs, haskell, lib, runCommand }: + +# `buildDhallUrl` is similar to `buildDhallDirectoryPackage` or +# `buildDhallGitHubPackage`, but instead builds a Nixpkgs Dhall package +# based on a hashed URL. This will generally be a URL that has an integrity +# check in a Dhall file. +# +# Similar to `buildDhallDirectoryPackage` and `buildDhallGitHubPackage`, the output +# of this function is a derivation that has a `binary.dhall` file, along with +# a `.cache/` directory with the actual contents of the Dhall file from the +# suppiled URL. +# +# This function is primarily used by `dhall-to-nixpkgs directory --fixed-output-derivations`. + +{ # URL of the input Dhall file. + # example: "https://raw.githubusercontent.com/cdepillabout/example-dhall-repo/c1b0d0327146648dcf8de997b2aa32758f2ed735/example1.dhall" + url + + # Nix hash of the input Dhall file. + # example: "sha256-ZTSiQUXpPbPfPvS8OeK6dDQE6j6NbP27ho1cg9YfENI=" +, hash + + # Dhall hash of the input Dhall file. + # example: "sha256:6534a24145e93db3df3ef4bc39e2ba743404ea3e8d6cfdbb868d5c83d61f10d2" +, dhallHash + + # Name for this derivation. +, name ? (baseNameOf url + "-cache") + + # `buildDhallUrl` can include both a "source distribution" in + # `source.dhall` and a "binary distribution" in `binary.dhall`: + # + # * `source.dhall` is a dependency-free αβ-normalized Dhall expression + # + # * `binary.dhall` is an expression of the form: `missing sha256:${HASH}` + # + # This expression requires you to install the cache product located at + # `.cache/dhall/1220${HASH}` to successfully resolve + # + # By default, `buildDhallUrl` only includes "binary.dhall" to conserve + # space within the Nix store, but if you set the following `source` option to + # `true` then the package will also include `source.dhall`. +, source ? false +}: + +let + # HTTP support is disabled in order to force that HTTP dependencies are built + # using Nix instead of using Dhall's support for HTTP imports. + dhallNoHTTP = haskell.lib.appendConfigureFlag dhall "-f-with-http"; + + # This uses Dhall's remote importing capabilities for downloading a Dhall file. + # The output Dhall file has all imports resolved, and then is + # alpha-normalized and binary-encoded. + downloadedEncodedFile = + runCommand + (baseNameOf url) + { + outputHashAlgo = null; + outputHash = hash; + name = baseNameOf url; + nativeBuildInputs = [ cacert ]; + } + '' + echo "${url} ${dhallHash}" > in-dhall-file + ${dhall}/bin/dhall --alpha --plain --file in-dhall-file | ${dhallNoHTTP}/bin/dhall encode > $out + ''; + + cache = ".cache"; + + data = ".local/share"; + + cacheDhall = "${cache}/dhall"; + + dataDhall = "${data}/dhall"; + + sourceFile = "source.dhall"; + +in + runCommand name { } ('' + set -eu + + mkdir -p ${cacheDhall} $out/${cacheDhall} + + export XDG_CACHE_HOME=$PWD/${cache} + + SHA_HASH="${dhallHash}" + + HASH_FILE="''${SHA_HASH/sha256:/1220}" + + cp ${downloadedEncodedFile} $out/${cacheDhall}/$HASH_FILE + + echo "missing $SHA_HASH" > $out/binary.dhall + '' + + lib.optionalString source '' + ${dhallNoHTTP}/bin/dhall decode --file ${downloadedEncodedFile} > $out/${sourceFile} + '') diff --git a/pkgs/development/interpreters/erlang/R24.nix b/pkgs/development/interpreters/erlang/R24.nix index 12f7464f064e..589a836967c0 100644 --- a/pkgs/development/interpreters/erlang/R24.nix +++ b/pkgs/development/interpreters/erlang/R24.nix @@ -3,6 +3,6 @@ # How to obtain `sha256`: # nix-prefetch-url --unpack https://github.com/erlang/otp/archive/OTP-${version}.tar.gz mkDerivation { - version = "24.1.3"; - sha256 = "sha256-l0+eZh4F/erY0ZKikUilRPiwkIhEL1Fb5BauR7gh+Ew="; + version = "24.1.4"; + sha256 = "sha256-QE2VRayIswVrAOv9/bq+ebv3xxIL3fFMnfm5u1Wh8j4="; } diff --git a/pkgs/development/interpreters/jelly/default.nix b/pkgs/development/interpreters/jelly/default.nix index a317f35d2a78..46c27e91a02a 100644 --- a/pkgs/development/interpreters/jelly/default.nix +++ b/pkgs/development/interpreters/jelly/default.nix @@ -20,7 +20,7 @@ python3Packages.buildPythonApplication { meta = with lib; { description = "A recreational programming language inspired by J"; - homepage = https://github.com/DennisMitchell/jellylanguage; + homepage = "https://github.com/DennisMitchell/jellylanguage"; license = licenses.mit; maintainers = [ maintainers.tckmn ]; platforms = platforms.all; diff --git a/pkgs/development/interpreters/joker/default.nix b/pkgs/development/interpreters/joker/default.nix index 652e828eb5f4..17503fc66ec1 100644 --- a/pkgs/development/interpreters/joker/default.nix +++ b/pkgs/development/interpreters/joker/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "joker"; - version = "0.17.2"; + version = "0.17.3"; src = fetchFromGitHub { rev = "v${version}"; owner = "candid82"; repo = "joker"; - sha256 = "sha256-rboyRancRTyrSY+13Blrz7OsIzclDS4X4hkHGD6cpyk="; + sha256 = "sha256-mm1vFXaQEljsU7Yg+3zDF2MBsc/ePSVF9LezeMWCyL0="; }; vendorSha256 = "sha256-AYoespfzFLP/jIIxbw5K653wc7sSfLY8K7di8GZ64wA="; diff --git a/pkgs/development/interpreters/lua-5/setup-hook.nix b/pkgs/development/interpreters/lua-5/setup-hook.nix deleted file mode 100644 index e69de29bb2d1..000000000000 diff --git a/pkgs/development/interpreters/luajit/2.0.nix b/pkgs/development/interpreters/luajit/2.0.nix index efae91c17bc7..5516bf002cd9 100644 --- a/pkgs/development/interpreters/luajit/2.0.nix +++ b/pkgs/development/interpreters/luajit/2.0.nix @@ -1,10 +1,10 @@ { self, callPackage, lib }: callPackage ./default.nix { inherit self; - version = "2.0.5-2021-07-27"; - rev = "3a654999c6f00de4cb9e61232d23579442e544a0"; + version = "2.0.5-2021-10-02"; + rev = "d3294fa63b344173db68dd612c6d3801631e28d4"; isStable = true; - sha256 = "0q187vn6bspn9i33hrvfy59mh83nd8jjmik5qkkkc3vls13jxr6z"; + sha256 = "0ja6x7bv3iqnf6m8xk6qp1dgan2b7mys0ff86dw671fqqrfw28fn"; extraMeta = { # this isn't precise but it at least stops the useless Hydra build platforms = with lib; filter (p: !hasPrefix "aarch64-" p) (platforms.linux ++ platforms.darwin); diff --git a/pkgs/development/interpreters/luajit/2.1.nix b/pkgs/development/interpreters/luajit/2.1.nix index 6ac47a6c3359..4898999281d0 100644 --- a/pkgs/development/interpreters/luajit/2.1.nix +++ b/pkgs/development/interpreters/luajit/2.1.nix @@ -1,8 +1,8 @@ { self, callPackage }: callPackage ./default.nix { inherit self; - version = "2.1.0-2021-08-12"; - rev = "8ff09d9f5ad5b037926be2a50dc32b681c5e7597"; + version = "2.1.0-2021-10-27"; + rev = "b4b2dce9fc3ffaaaede39b36d06415311e2aa516"; isStable = false; - sha256 = "18wp8sgmiwlslnvgs35cy35ji2igksyfm3f8hrx07hqmsq2d77vr"; + sha256 = "185s071aa0yffz8npgdxj7l98cs987vddb2l5pzfcdqfj41gn55q"; } diff --git a/pkgs/development/interpreters/luajit/aarch64-darwin-disable-unwind-external.patch b/pkgs/development/interpreters/luajit/aarch64-darwin-disable-unwind-external.patch deleted file mode 100644 index dcfb1e9d4e7f..000000000000 --- a/pkgs/development/interpreters/luajit/aarch64-darwin-disable-unwind-external.patch +++ /dev/null @@ -1,14 +0,0 @@ -diff --git a/src/Makefile b/src/Makefile -index 2538503f..7e6380da 100644 ---- a/src/Makefile -+++ b/src/Makefile -@@ -320,7 +320,9 @@ ifeq (Darwin,$(TARGET_SYS)) - $(error missing: export MACOSX_DEPLOYMENT_TARGET=XX.YY) - endif - TARGET_STRIP+= -x -+ ifneq (arm64,$(shell uname -m)) - TARGET_XCFLAGS+= -DLUAJIT_UNWIND_EXTERNAL -+ endif - TARGET_XSHLDFLAGS= -dynamiclib -single_module -undefined dynamic_lookup -fPIC - TARGET_DYNXLDOPTS= - TARGET_XSHLDFLAGS+= -install_name $(TARGET_DYLIBPATH) -compatibility_version $(MAJVER).$(MINVER) -current_version $(MAJVER).$(MINVER).$(RELVER) diff --git a/pkgs/development/interpreters/luajit/default.nix b/pkgs/development/interpreters/luajit/default.nix index ac74610bcce9..87de82eb2630 100644 --- a/pkgs/development/interpreters/luajit/default.nix +++ b/pkgs/development/interpreters/luajit/default.nix @@ -51,10 +51,6 @@ stdenv.mkDerivation rec { luaversion = "5.1"; - # Fix for pcall on aarch64-darwin. - # Upstream issue: https://github.com/LuaJIT/LuaJIT/issues/698 - patches = lib.optionals (stdenv.hostPlatform.system == "aarch64-darwin") [ ./aarch64-darwin-disable-unwind-external.patch ]; - postPatch = '' substituteInPlace Makefile --replace ldconfig : if test -n "''${dontStrip-}"; then diff --git a/pkgs/development/interpreters/octave/default.nix b/pkgs/development/interpreters/octave/default.nix index 6a1d6c30cc18..033cc2f872ab 100644 --- a/pkgs/development/interpreters/octave/default.nix +++ b/pkgs/development/interpreters/octave/default.nix @@ -114,12 +114,12 @@ let }; self = mkDerivation rec { - version = "6.3.0"; + version = "6.4.0"; pname = "octave"; src = fetchurl { url = "mirror://gnu/octave/${pname}-${version}.tar.gz"; - sha256 = "sha256-IyBl86cvwwE/6fF/Qpo99p1nLB9rYHcCmjHI881Ypm4="; + sha256 = "sha256-tI8z1Pzq85TPvqc6jIUAAJNtg6QXOaJPdWi1sKezms0="; }; buildInputs = [ diff --git a/pkgs/development/interpreters/racket/default.nix b/pkgs/development/interpreters/racket/default.nix index d64a78965008..73ce0c1bc81b 100644 --- a/pkgs/development/interpreters/racket/default.nix +++ b/pkgs/development/interpreters/racket/default.nix @@ -48,7 +48,7 @@ in stdenv.mkDerivation rec { pname = "racket"; - version = "8.2"; # always change at once with ./minimal.nix + version = "8.3"; # always change at once with ./minimal.nix src = (lib.makeOverridable ({ name, sha256 }: fetchurl { @@ -57,7 +57,7 @@ stdenv.mkDerivation rec { } )) { name = "${pname}-${version}"; - sha256 = "10kl9xxl9swz8hdpycpy1vjc8biah5h07dzaygsf0ylfjdrczwx0"; + sha256 = "sha256-M90MIIRsfF/fhK8twlD3ZRBO0ztQkb4VKp9o8eJUFFc="; }; FONTCONFIG_FILE = fontsConf; diff --git a/pkgs/development/interpreters/racket/minimal.nix b/pkgs/development/interpreters/racket/minimal.nix index cf3f322b4e7e..c7defc8bfa6b 100644 --- a/pkgs/development/interpreters/racket/minimal.nix +++ b/pkgs/development/interpreters/racket/minimal.nix @@ -5,7 +5,7 @@ racket.overrideAttrs (oldAttrs: rec { name = "racket-minimal-${oldAttrs.version}"; src = oldAttrs.src.override { inherit name; - sha256 = "1iw4z962vp287q6wwvky36iqmwg1mqyxxpbk96aqr2ckfjqwnkbg"; + sha256 = "sha256-3GdnP1D0XMW34u4mAronxKXe08A3tawM8cpSC7nDfWI="; }; meta = oldAttrs.meta // { diff --git a/pkgs/development/interpreters/rakudo/moarvm.nix b/pkgs/development/interpreters/rakudo/moarvm.nix index e4c070107bde..b8ed60c69a99 100644 --- a/pkgs/development/interpreters/rakudo/moarvm.nix +++ b/pkgs/development/interpreters/rakudo/moarvm.nix @@ -10,6 +10,17 @@ stdenv.mkDerivation rec { sha256 = "sha256-fzSHpw6Ld74OTi8SsUxJ9qAdA3jglAyGlYyQFsSVrXU="; }; + postPatch = '' + patchShebangs . + '' + lib.optionalString stdenv.isDarwin '' + substituteInPlace Configure.pl \ + --replace '`/usr/bin/arch`' '"${stdenv.hostPlatform.darwinArch}"' \ + --replace '/usr/bin/arch' "$(type -P true)" \ + --replace '/usr/' '/nope/' + substituteInPlace 3rdparty/dyncall/configure \ + --replace '`sw_vers -productVersion`' '"$MACOSX_DEPLOYMENT_TARGET"' + ''; + buildInputs = [ perl ] ++ lib.optionals stdenv.isDarwin [ CoreServices ApplicationServices ]; doCheck = false; # MoarVM does not come with its own test suite diff --git a/pkgs/development/interpreters/spidermonkey/1.8.5-arm-flags.patch b/pkgs/development/interpreters/spidermonkey/1.8.5-arm-flags.patch deleted file mode 100644 index 721aff154e37..000000000000 --- a/pkgs/development/interpreters/spidermonkey/1.8.5-arm-flags.patch +++ /dev/null @@ -1,342 +0,0 @@ -From: Mike Hommey <mh@glandium.org> -Date: Wed, 27 Apr 2011 08:58:01 +0200 -Subject: Bug 626035 - Modify the way arm compiler flags are set in configure - ---- - configure.in | 292 ++++++++++++++++++++++++++++++++------------------- - js/src/configure.in | 284 ++++++++++++++++++++++++++++++++----------------- - 2 files changed, 372 insertions(+), 204 deletions(-) - -Index: mozjs-1.8.5-1.0.0+dfsg/js/src/configure.in -=================================================================== ---- mozjs-1.8.5-1.0.0+dfsg.orig/js/src/configure.in 2012-01-21 15:57:37.507703219 +0100 -+++ mozjs-1.8.5-1.0.0+dfsg/js/src/configure.in 2012-01-21 15:58:04.951703302 +0100 -@@ -3535,34 +3535,6 @@ - AC_CHECK_LIB(socket, socket) - esac - --AC_MSG_CHECKING(for ARM SIMD support in compiler) --AC_TRY_COMPILE([], -- [asm("uqadd8 r1, r1, r2");], -- result="yes", result="no") --AC_MSG_RESULT("$result") --if test "$result" = "yes"; then -- AC_DEFINE(HAVE_ARM_SIMD) -- HAVE_ARM_SIMD=1 --fi --AC_SUBST(HAVE_ARM_SIMD) -- --AC_MSG_CHECKING(for ARM NEON support in compiler) --_SAVE_CFLAGS="$CFLAGS" --if test "$GNU_CC"; then -- # gcc needs -mfpu=neon to recognize NEON instructions -- CFLAGS="$CFLAGS -mfpu=neon -mfloat-abi=softfp" --fi --AC_TRY_COMPILE([], -- [asm("vadd.i8 d0, d0, d0");], -- result="yes", result="no") --AC_MSG_RESULT("$result") --if test "$result" = "yes"; then -- AC_DEFINE(HAVE_ARM_NEON) -- HAVE_ARM_NEON=1 --fi --CFLAGS="$_SAVE_CFLAGS" --AC_SUBST(HAVE_ARM_NEON) -- - dnl ======================================================== - dnl = pthread support - dnl = Start by checking whether the system support pthreads -@@ -4614,13 +4586,11 @@ - BUILD_STATIC_LIBS= - ENABLE_TESTS=1 - --MOZ_THUMB2= - USE_ARM_KUSER= - - case "${target}" in - arm-android-eabi) - USE_ARM_KUSER=1 -- MOZ_THUMB2=1 - ;; - esac - -@@ -4666,80 +4636,204 @@ - dnl ======================================================== - MOZ_ARG_HEADER(Individual module options) - --dnl Setup default CPU arch for arm target --case "$target_cpu" in -- arm*) -- MOZ_ARM_ARCH=armv7 -- ;; --esac - dnl ======================================================== --dnl = Enable building the Thumb2 instruction set -+dnl = ARM toolchain tweaks - dnl ======================================================== --MOZ_ARG_ENABLE_BOOL(thumb2, -- [ --enable-thumb2 Enable Thumb2 instruction set (implies ARMv7)], -- MOZ_THUMB2=1, -- MOZ_THUMB2=) --if test -n "$MOZ_THUMB2"; then -- MOZ_ARM_ARCH=armv7 -+ -+dnl Defaults -+case "${target}" in -+arm-android-eabi) -+ MOZ_THUMB=yes -+ MOZ_ARCH=armv7-a -+ MOZ_FPU=vfp -+ MOZ_FLOAT_ABI=softfp -+ ;; -+arm*-*) -+ if test -n "$MOZ_PLATFORM_MAEMO"; then -+ MOZ_THUMB=no -+ MOZ_ARCH=armv7-a -+ MOZ_FLOAT_ABI=softfp -+ fi -+ if test "$MOZ_PLATFORM_MAEMO" = 6; then -+ MOZ_THUMB=yes -+ fi -+ ;; -+esac -+ -+dnl Kept for compatibility with some buildbot mozconfig -+MOZ_ARG_DISABLE_BOOL(thumb2, [], MOZ_THUMB=no, MOZ_THUMB=yes) -+ -+MOZ_ARG_WITH_STRING(thumb, -+[ --with-thumb[[=yes|no|toolchain]]] -+[ Use Thumb instruction set (-mthumb)], -+ if test -z "$GNU_CC"; then -+ AC_MSG_ERROR([--with-thumb is not supported on non-GNU toolchains]) -+ fi -+ MOZ_THUMB=$withval) -+ -+MOZ_ARG_WITH_STRING(thumb-interwork, -+[ --with-thumb-interwork[[=yes|no|toolchain]] -+ Use Thumb/ARM instuctions interwork (-mthumb-interwork)], -+ if test -z "$GNU_CC"; then -+ AC_MSG_ERROR([--with-thumb-interwork is not supported on non-GNU toolchains]) -+ fi -+ MOZ_THUMB_INTERWORK=$withval) -+ -+MOZ_ARG_WITH_STRING(arch, -+[ --with-arch=[[type|toolchain]] -+ Use specific CPU features (-march=type)], -+ if test -z "$GNU_CC"; then -+ AC_MSG_ERROR([--with-arch is not supported on non-GNU toolchains]) -+ fi -+ MOZ_ARCH=$withval) -+ -+MOZ_ARG_WITH_STRING(fpu, -+[ --with-fpu=[[type|toolchain]] -+ Use specific FPU type (-mfpu=type)], -+ if test -z "$GNU_CC"; then -+ AC_MSG_ERROR([--with-fpu is not supported on non-GNU toolchains]) -+ fi -+ MOZ_FPU=$withval) -+ -+MOZ_ARG_WITH_STRING(float-abi, -+[ --with-float-abi=[[type|toolchain]] -+ Use specific arm float ABI (-mfloat-abi=type)], -+ if test -z "$GNU_CC"; then -+ AC_MSG_ERROR([--with-float-abi is not supported on non-GNU toolchains]) -+ fi -+ MOZ_FLOAT_ABI=$withval) -+ -+MOZ_ARG_WITH_STRING(soft-float, -+[ --with-soft-float[[=yes|no|toolchain]] -+ Use soft float library (-msoft-float)], -+ if test -z "$GNU_CC"; then -+ AC_MSG_ERROR([--with-soft-float is not supported on non-GNU toolchains]) -+ fi -+ MOZ_SOFT_FLOAT=$withval) -+ -+case "$MOZ_ARCH" in -+toolchain|"") -+ arch_flag="" -+ ;; -+*) -+ arch_flag="-march=$MOZ_ARCH" -+ ;; -+esac -+ -+case "$MOZ_THUMB" in -+yes) -+ MOZ_THUMB2=1 -+ thumb_flag="-mthumb" -+ ;; -+no) -+ MOZ_THUMB2= -+ thumb_flag="-marm" -+ ;; -+*) -+ _SAVE_CFLAGS="$CFLAGS" -+ CFLAGS="$arch_flag" -+ AC_TRY_COMPILE([],[return sizeof(__thumb2__);], -+ MOZ_THUMB2=1, -+ MOZ_THUMB2=) -+ CFLAGS="$_SAVE_CFLAGS" -+ thumb_flag="" -+ ;; -+esac -+ -+if test "$MOZ_THUMB2" = 1; then -+ AC_DEFINE(MOZ_THUMB2) - fi - --dnl ======================================================== --dnl = Enable building for ARM specific CPU features --dnl ======================================================== --MOZ_ARG_WITH_STRING(cpu-arch, --[ --with-cpu-arch=arch Use specific arm architecture CPU features, default armv7], -- MOZ_ARM_ARCH=$withval) -+case "$MOZ_THUMB_INTERWORK" in -+yes) -+ thumb_interwork_flag="-mthumb-interwork" -+ ;; -+no) -+ thumb_interwork_flag="-mno-thumb-interwork" -+ ;; -+*) # toolchain -+ thumb_interwork_flag="" -+ ;; -+esac - --if test -n "$MOZ_THUMB2"; then -- case "$target_cpu" in -- arm*) -- if test "$MOZ_ARM_ARCH" != "armv7"; then -- AC_MSG_ERROR([--enable-thumb2 is not compatible with cpu-arch=$MOZ_ARM_ARCH]) -- fi -- if test "$GNU_CC"; then -- AC_DEFINE(MOZ_THUMB2) -- AC_DEFINE(MOZ_ARM_ARCH) -- CFLAGS="$CFLAGS -march=armv7-a -mthumb -mfloat-abi=softfp $MOZ_ARM_VFP_FLAGS" -- CXXFLAGS="$CXXFLAGS -march=armv7-a -mthumb -mfloat-abi=softfp $MOZ_ARM_VFP_FLAGS" -- ASFLAGS="$ASFLAGS -march=armv7-a -mthumb -mfloat-abi=softfp $MOZ_ARM_VFP_FLAGS" -- else -- AC_MSG_ERROR([--enable-thumb2 is not supported for non-GNU toolchains]) -- fi -+case "$MOZ_FPU" in -+toolchain|"") -+ fpu_flag="" - ;; -- *) -- AC_MSG_ERROR([--enable-thumb2 is not supported for non-ARM CPU architectures]) -+*) -+ fpu_flag="-mfpu=$MOZ_FPU" - ;; -- esac --elif test "$MOZ_ARM_ARCH" = "armv7"; then -- case "$target_cpu" in -- arm*) -- if test "$GNU_CC"; then -- AC_DEFINE(MOZ_ARM_ARCH) -- CFLAGS="$CFLAGS -march=armv7-a -marm -mfloat-abi=softfp $MOZ_ARM_VFP_FLAGS" -- CXXFLAGS="$CXXFLAGS -march=armv7-a -marm -mfloat-abi=softfp $MOZ_ARM_VFP_FLAGS" -- ASFLAGS="$ASFLAGS -march=armv7-a -marm -mfloat-abi=softfp $MOZ_ARM_VFP_FLAGS" -- else -- AC_MSG_ERROR([--with-cpu-arch=armv7 is not supported for non-GNU toolchains]) -- fi -+esac -+ -+case "$MOZ_FLOAT_ABI" in -+toolchain|"") -+ float_abi_flag="" - ;; -- *) -- AC_MSG_ERROR([--with-cpu-arch=armv7 is not supported for non-ARM CPU architectures]) -+*) -+ float_abi_flag="-mfloat-abi=$MOZ_FLOAT_ABI" - ;; -- esac --else -- case "$target_cpu" in -- arm*) -- if test "$GNU_CC"; then -- CFLAGS="$CFLAGS -march=armv5te -mthumb-interwork -msoft-float" -- CXXFLAGS="$CXXFLAGS -march=armv5te -mthumb-interwork -msoft-float" -- ASFLAGS="$ASFLAGS -march=armv5te -mthumb-interwork -msoft-float" -- fi -- ;; -- esac -+esac -+ -+case "$MOZ_SOFT_FLOAT" in -+yes) -+ soft_float_flag="-msoft-float" -+ ;; -+no) -+ soft_float_flag="-mno-soft-float" -+ ;; -+*) # toolchain -+ soft_float_flag="" -+ ;; -+esac -+ -+dnl Use echo to avoid accumulating space characters -+all_flags=`echo $arch_flag $thumb_flag $thumb_interwork_flag $fpu_flag $float_abi_flag $soft_float_flag` -+if test -n "$all_flags"; then -+ _SAVE_CFLAGS="$CFLAGS" -+ CFLAGS="$all_flags" -+ AC_MSG_CHECKING(whether the chosen combination of compiler flags ($all_flags) works) -+ AC_TRY_COMPILE([],[return 0;], -+ AC_MSG_RESULT([yes]), -+ AC_MSG_ERROR([no])) -+ -+ CFLAGS="$_SAVE_CFLAGS $all_flags" -+ CXXFLAGS="$CXXFLAGS $all_flags" -+ ASFLAGS="$ASFLAGS $all_flags" -+ if test -n "$thumb_flag"; then -+ LDFLAGS="$LDFLAGS $thumb_flag" -+ fi - fi - - AC_SUBST(MOZ_THUMB2) --AC_SUBST(MOZ_ARM_ARCH) -+ -+if test "$CPU_ARCH" = "arm"; then -+ AC_MSG_CHECKING(for ARM SIMD support in compiler) -+ # We try to link so that this also fails when -+ # building with LTO. -+ AC_TRY_LINK([], -+ [asm("uqadd8 r1, r1, r2");], -+ result="yes", result="no") -+ AC_MSG_RESULT("$result") -+ if test "$result" = "yes"; then -+ AC_DEFINE(HAVE_ARM_SIMD) -+ HAVE_ARM_SIMD=1 -+ fi -+ -+ AC_MSG_CHECKING(for ARM NEON support in compiler) -+ # We try to link so that this also fails when -+ # building with LTO. -+ AC_TRY_LINK([], -+ [asm(".fpu neon\n vadd.i8 d0, d0, d0");], -+ result="yes", result="no") -+ AC_MSG_RESULT("$result") -+ if test "$result" = "yes"; then -+ AC_DEFINE(HAVE_ARM_NEON) -+ HAVE_ARM_NEON=1 -+ fi -+fi # CPU_ARCH = arm -+ -+AC_SUBST(HAVE_ARM_SIMD) -+AC_SUBST(HAVE_ARM_NEON) - - dnl ======================================================== - dnl = -@@ -6147,12 +6241,6 @@ - if test "$OS_ARCH" = "OS2"; then - ac_configure_args="$ac_configure_args CFLAGS=-Zomf AR=emxomfar" - fi -- if test -n "$MOZ_THUMB2"; then -- ac_configure_args="$ac_configure_args --enable-thumb2" -- fi -- if test -n "$MOZ_ARM_ARCH"; then -- ac_configure_args="$ac_configure_args --with-cpu-arch=$MOZ_ARM_ARCH" -- fi - - # Use a separate cache file for libffi, since it does things differently - # from our configure. diff --git a/pkgs/development/interpreters/spidermonkey/1.8.5-findvanilla.patch b/pkgs/development/interpreters/spidermonkey/1.8.5-findvanilla.patch deleted file mode 100644 index f6dab5497a0a..000000000000 --- a/pkgs/development/interpreters/spidermonkey/1.8.5-findvanilla.patch +++ /dev/null @@ -1,19 +0,0 @@ -diff --git a/js/src/Makefile.in b/js/src/Makefile.in -index a85e055..92ef441 100644 ---- a/js/src/Makefile.in -+++ b/js/src/Makefile.in -@@ -580,14 +580,6 @@ check-valgrind:: - $(check-sync-dirs) $(srcdir)/build $(MOZ_SYNC_BUILD_FILES)/build - endif - --# The "find any vanilla new/new[] calls" script is tailored to Linux, so --# only run it there. That should be enough to catch any such calls that --# creep in. --ifeq ($(OS_ARCH),Linux) --check:: -- $(srcdir)/config/find_vanilla_new_calls $(LIBRARY) --endif -- - ifdef ENABLE_TRACEJIT - ifndef WINCE - JITFLAGS = ,m,j,mj,mjp,am,amj,amjp,amd diff --git a/pkgs/development/interpreters/spidermonkey/68.nix b/pkgs/development/interpreters/spidermonkey/68.nix index 420c3d72f891..5cfb2de919f1 100644 --- a/pkgs/development/interpreters/spidermonkey/68.nix +++ b/pkgs/development/interpreters/spidermonkey/68.nix @@ -7,11 +7,11 @@ let python3Env = buildPackages.python3.withPackages (p: [p.six]); in stdenv.mkDerivation rec { pname = "spidermonkey"; - version = "68.10.0"; + version = "68.12.0"; src = fetchurl { url = "mirror://mozilla/firefox/releases/${version}esr/source/firefox-${version}esr.source.tar.xz"; - sha256 = "0azdinwqjfv2q37gqpxmfvzsk86pvsi6cjaq1310zs26gric5j1f"; + sha256 = "1k17pi4zh9hrvkzbw4rzzw879a15hpvwriylp75wl22rl7r2nsdf"; }; patches = [ diff --git a/pkgs/development/interpreters/spidermonkey/91.nix b/pkgs/development/interpreters/spidermonkey/91.nix new file mode 100644 index 000000000000..953a4c506b5c --- /dev/null +++ b/pkgs/development/interpreters/spidermonkey/91.nix @@ -0,0 +1,119 @@ +{ lib, stdenv +, fetchurl +, pkg-config +, perl +, python3 +, zip +, buildPackages +, which +, readline +, zlib +, icu69 +, cargo +, rustc +, rust-cbindgen +, yasm +, llvmPackages_latest +, nspr +, m4 +}: + +stdenv.mkDerivation rec { + pname = "spidermonkey"; + version = "91.3.0"; + + src = fetchurl { + url = "mirror://mozilla/firefox/releases/${version}esr/source/firefox-${version}esr.source.tar.xz"; + sha256 = "0v79c435vfbhsx7pqyq4jm5rv8iysig69wwqhvys1n0jy54m72qj"; + }; + + outputs = [ "out" "dev" ]; + setOutputFlags = false; # Configure script only understands --includedir + + nativeBuildInputs = [ + cargo + llvmPackages_latest.llvm # for llvm-objdump + perl + pkg-config + python3 + rust-cbindgen + rustc + which + yasm # to buid icu? seems weird + zip + m4 + ]; + + buildInputs = [ + icu69 + nspr + readline + zlib + ]; + + preConfigure = '' + export LIBXUL_DIST=$out + export PYTHON="${buildPackages.python3.interpreter}" + export M4=m4 + export AWK=awk + export AC_MACRODIR=$PWD/build/autoconf/ + + pushd js/src + sh ../../build/autoconf/autoconf.sh --localdir=$PWD configure.in > configure + chmod +x configure + popd + # We can't build in js/src/, so create a build dir + mkdir obj + cd obj/ + configureScript=../js/src/configure + ''; + + configureFlags = [ + "--with-intl-api" + "--with-system-icu" + "--with-system-nspr" + "--with-system-zlib" + "--enable-optimize" + "--enable-readline" + "--enable-release" + "--enable-shared-js" + "--disable-debug" + "--disable-jemalloc" + "--disable-strip" + "--disable-tests" + ] ++ lib.optionals (stdenv.hostPlatform != stdenv.buildPlatform) [ + # Spidermonkey seems to use different host/build terminology for cross + # compilation here. + "--host=${stdenv.buildPlatform.config}" + "--target=${stdenv.hostPlatform.config}" + ]; + + depsBuildBuild = [ buildPackages.stdenv.cc ]; + + # Remove unnecessary static lib + preFixup = '' + moveToOutput bin/js91-config "$dev" + rm $out/lib/libjs_static.ajs + ln -s $out/bin/js91 $out/bin/js + ''; + + enableParallelBuilding = true; + + postPatch = '' + # This patch is a manually applied fix of + # https://bugzilla.mozilla.org/show_bug.cgi?id=1644600 + # Once that bug is fixed, this can be removed. + # This is needed in, for example, `zeroad`. + substituteInPlace js/public/StructuredClone.h \ + --replace "class SharedArrayRawBufferRefs {" \ + "class JS_PUBLIC_API SharedArrayRawBufferRefs {" + ''; + + meta = with lib; { + description = "Mozilla's JavaScript engine written in C/C++"; + homepage = "https://spidermonkey.dev/"; + license = licenses.mpl20; + maintainers = with maintainers; [ lostnet ]; + platforms = platforms.linux; + }; +} diff --git a/pkgs/development/libraries/LAStools/default.nix b/pkgs/development/libraries/LAStools/default.nix index 61a39aa8e76d..f9f3b09ba0ac 100644 --- a/pkgs/development/libraries/LAStools/default.nix +++ b/pkgs/development/libraries/LAStools/default.nix @@ -25,7 +25,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "Software for rapid LiDAR processing"; - homepage = http://lastools.org/; + homepage = "http://lastools.org/"; license = licenses.unfree; maintainers = with maintainers; [ stephenwithph ]; platforms = platforms.unix; diff --git a/pkgs/development/libraries/StormLib/default.nix b/pkgs/development/libraries/StormLib/default.nix new file mode 100644 index 000000000000..0bf9ba63dc48 --- /dev/null +++ b/pkgs/development/libraries/StormLib/default.nix @@ -0,0 +1,29 @@ +{ lib, stdenv, fetchFromGitHub, cmake, bzip2, libtomcrypt, zlib }: + +stdenv.mkDerivation rec { + pname = "StormLib"; + version = "9.22"; + + src = fetchFromGitHub { + owner = "ladislav-zezula"; + repo = "StormLib"; + rev = "v${version}"; + sha256 = "1rcdl6ryrr8fss5z5qlpl4prrw8xpbcdgajg2hpp0i7fpk21ymcc"; + }; + + cmakeFlags = [ + "-DBUILD_SHARED_LIBS=ON" + "-DWITH_LIBTOMCRYPT=ON" + ]; + + nativeBuildInputs = [ cmake ]; + buildInputs = [ bzip2 libtomcrypt zlib ]; + + meta = with lib; { + homepage = "https://github.com/ladislav-zezula/StormLib"; + license = licenses.mit; + description = "An open-source project that can work with Blizzard MPQ archives"; + platforms = platforms.all; + maintainers = with maintainers; [ aanderse karolchmist ]; + }; +} diff --git a/pkgs/development/libraries/amdvlk/default.nix b/pkgs/development/libraries/amdvlk/default.nix index 9eec2be67b7b..de3c2bc4a072 100644 --- a/pkgs/development/libraries/amdvlk/default.nix +++ b/pkgs/development/libraries/amdvlk/default.nix @@ -65,9 +65,6 @@ in stdenv.mkDerivation rec { cmakeDir = "../drivers/xgl"; - # LTO is disabled in gcc for i686 as of #66528 - cmakeFlags = lib.optionals stdenv.is32bit ["-DXGL_ENABLE_LTO=OFF"]; - installPhase = '' install -Dm755 -t $out/lib icd/amdvlk${suffix}.so install -Dm644 -t $out/share/vulkan/icd.d icd/amd_icd${suffix}.json diff --git a/pkgs/development/libraries/applet-window-buttons/default.nix b/pkgs/development/libraries/applet-window-buttons/default.nix index d1d20ef0e489..c58fb5bc240d 100644 --- a/pkgs/development/libraries/applet-window-buttons/default.nix +++ b/pkgs/development/libraries/applet-window-buttons/default.nix @@ -11,13 +11,13 @@ mkDerivation rec { pname = "applet-window-buttons"; - version = "0.9.0"; + version = "0.10.1"; src = fetchFromGitHub { owner = "psifidotos"; repo = "applet-window-buttons"; rev = version; - sha256 = "sha256-ikgUE8GaiTpNjwrz7SbNQ3+b8KiigDgMREQ7J2b+EEs="; + sha256 = "18h2g3jqzr88wkmws2iz71sgrz633zwkqvhn32sdi32sxxbrksgd"; }; nativeBuildInputs = [ diff --git a/pkgs/development/libraries/arrow-cpp/default.nix b/pkgs/development/libraries/arrow-cpp/default.nix index fe06a64bcf56..36e98bde7030 100644 --- a/pkgs/development/libraries/arrow-cpp/default.nix +++ b/pkgs/development/libraries/arrow-cpp/default.nix @@ -1,10 +1,54 @@ -{ stdenv, lib, fetchurl, fetchFromGitHub, fixDarwinDylibNames -, autoconf, boost, brotli, cmake, flatbuffers, gflags, glog, gtest, lz4 -, perl, python3, rapidjson, re2, snappy, thrift, tzdata , utf8proc, which -, zlib, zstd +{ stdenv +, lib +, fetchurl +, fetchFromGitHub +, fixDarwinDylibNames +, abseil-cpp +, autoconf +, aws-sdk-cpp +, boost +, brotli +, c-ares +, cmake +, crc32c +, curl +, flatbuffers +, gflags +, glog +, google-cloud-cpp +, grpc +, gtest +, jemalloc +, libnsl +, lz4 +, minio +, nlohmann_json +, openssl +, perl +, protobuf +, python3 +, rapidjson +, re2 +, snappy +, thrift +, tzdata +, utf8proc +, which +, zlib +, zstd , enableShared ? !stdenv.hostPlatform.isStatic +, enableFlight ? !stdenv.isDarwin # libnsl is not supported on darwin + # boost/process is broken in 1.69 on darwin, but fixed in 1.70 and + # non-existent in older versions + # see https://github.com/boostorg/process/issues/55 +, enableS3 ? (!stdenv.isDarwin) || (lib.versionOlder boost.version "1.69" || lib.versionAtLeast boost.version "1.70") +, enableGcs ? !stdenv.isDarwin # google-cloud-cpp is not supported on darwin }: +assert lib.asserts.assertMsg + ((enableS3 && stdenv.isDarwin) -> (lib.versionOlder boost.version "1.69" || lib.versionAtLeast boost.version "1.70")) + "S3 on Darwin requires Boost != 1.69"; + let arrow-testing = fetchFromGitHub { owner = "apache"; @@ -20,7 +64,8 @@ let hash = "sha256-GmOAS8gGhzDI0WzORMkWHRRUl/XBwmNen2d3VefZxxc="; }; -in stdenv.mkDerivation rec { +in +stdenv.mkDerivation rec { pname = "arrow-cpp"; version = "6.0.0"; @@ -31,22 +76,23 @@ in stdenv.mkDerivation rec { }; sourceRoot = "apache-arrow-${version}/cpp"; - ARROW_JEMALLOC_URL = fetchurl { + ARROW_JEMALLOC_URL = jemalloc.src; + + ARROW_MIMALLOC_URL = fetchFromGitHub { # From # ./cpp/cmake_modules/ThirdpartyToolchain.cmake # ./cpp/thirdparty/versions.txt - url = - "https://github.com/jemalloc/jemalloc/releases/download/5.2.1/jemalloc-5.2.1.tar.bz2"; - hash = "sha256-NDMOXOJ2CZ4uiVDZM121qHVomkxqVnUe87HYxTf4h/Y="; + owner = "microsoft"; + repo = "mimalloc"; + rev = "v1.7.2"; + hash = "sha256-yHupYFgC8mJuLUSpuEAfwF7l6Ue4EiuO1Q4qN4T6wWc="; }; - ARROW_MIMALLOC_URL = fetchurl { - # From - # ./cpp/cmake_modules/ThirdpartyToolchain.cmake - # ./cpp/thirdparty/versions.txt - url = - "https://github.com/microsoft/mimalloc/archive/v1.7.2.tar.gz"; - hash = "sha256-sZEuNUVlpLaYQQ91g8D4OTSm27Ot5Uq33csVaTIJNr0="; + ARROW_XSIMD_URL = fetchFromGitHub { + owner = "xtensor-stack"; + repo = "xsimd"; + rev = "aeec9c872c8b475dedd7781336710f2dd2666cb2"; + hash = "sha256-vWKdJkieKhaxyAJhijXUmD7NmNvMWd79PskQojulA1w="; }; patches = [ @@ -77,6 +123,18 @@ in stdenv.mkDerivation rec { ] ++ lib.optionals enableShared [ python3.pkgs.python python3.pkgs.numpy + ] ++ lib.optionals enableFlight [ + grpc + libnsl + openssl + protobuf + ] ++ lib.optionals enableS3 [ aws-sdk-cpp openssl ] + ++ lib.optionals enableGcs [ + abseil-cpp + crc32c + curl + google-cloud-cpp + nlohmann_json ]; preConfigure = '' @@ -112,45 +170,64 @@ in stdenv.mkDerivation rec { # Parquet options: "-DARROW_PARQUET=ON" "-DPARQUET_BUILD_EXECUTABLES=ON" + "-DARROW_FLIGHT=${if enableFlight then "ON" else "OFF"}" + "-DARROW_S3=${if enableS3 then "ON" else "OFF"}" + "-DARROW_GCS=${if enableGcs then "ON" else "OFF"}" ] ++ lib.optionals (!enableShared) [ "-DARROW_TEST_LINKAGE=static" ] ++ lib.optionals stdenv.isDarwin [ "-DCMAKE_SKIP_BUILD_RPATH=OFF" # needed for tests "-DCMAKE_INSTALL_RPATH=@loader_path/../lib" # needed for tools executables - ] ++ lib.optional (!stdenv.isx86_64) "-DARROW_USE_SIMD=OFF"; - - ARROW_XSIMD_URL = fetchurl { - url = "https://github.com/xtensor-stack/xsimd/archive/aeec9c872c8b475dedd7781336710f2dd2666cb2.tar.gz"; - sha256 = "09kvl962c6b0wnb7pb2n9dhvkflzwalgq6gwwi8628fgi9n1x10a"; - }; + ] ++ lib.optional (!stdenv.isx86_64) "-DARROW_USE_SIMD=OFF" + ++ lib.optional enableS3 "-DAWSSDK_CORE_HEADER_FILE=${aws-sdk-cpp}/include/aws/core/Aws.h"; doInstallCheck = true; - ARROW_TEST_DATA = - if doInstallCheck then "${arrow-testing}/data" else null; - PARQUET_TEST_DATA = - if doInstallCheck then "${parquet-testing}/data" else null; + ARROW_TEST_DATA = lib.optionalString doInstallCheck "${arrow-testing}/data"; + PARQUET_TEST_DATA = lib.optionalString doInstallCheck "${parquet-testing}/data"; GTEST_FILTER = - if doInstallCheck then let + let # Upstream Issue: https://issues.apache.org/jira/browse/ARROW-11398 filteredTests = lib.optionals stdenv.hostPlatform.isAarch64 [ "TestFilterKernelWithNumeric/3.CompareArrayAndFilterRandomNumeric" "TestFilterKernelWithNumeric/7.CompareArrayAndFilterRandomNumeric" "TestCompareKernel.PrimitiveRandomTests" + ] ++ lib.optionals enableS3 [ + "S3OptionsTest.FromUri" + "S3RegionResolutionTest.NonExistentBucket" + "S3RegionResolutionTest.PublicBucket" + "S3RegionResolutionTest.RestrictedBucket" + "TestMinioServer.Connect" + "TestS3FS.OpenOutputStreamBackgroundWrites" + "TestS3FS.OpenOutputStreamDestructorBackgroundWrites" + "TestS3FS.OpenOutputStreamDestructorSyncWrite" + "TestS3FS.OpenOutputStreamDestructorSyncWrites" + "TestS3FS.OpenOutputStreamMetadata" + "TestS3FS.OpenOutputStreamSyncWrites" + "TestS3FSGeneric.*" + ] ++ lib.optionals enableGcs [ + "GcsFileSystem.FileSystemCompare" + "GcsIntegrationTest.*" ]; - in "-${builtins.concatStringsSep ":" filteredTests}" else null; - installCheckInputs = [ perl which ]; + in + lib.optionalString doInstallCheck "-${builtins.concatStringsSep ":" filteredTests}"; + installCheckInputs = [ perl which ] ++ lib.optional enableS3 minio; installCheckPhase = - let - excludedTests = lib.optionals stdenv.isDarwin [ - # Some plasma tests need to be patched to use a shorter AF_UNIX socket - # path on Darwin. See https://github.com/NixOS/nix/pull/1085 - "plasma-external-store-tests" - "plasma-client-tests" - ]; - in '' - ctest -L unittest -V \ - --exclude-regex '^(${builtins.concatStringsSep "|" excludedTests})$' - ''; + let + excludedTests = lib.optionals stdenv.isDarwin [ + # Some plasma tests need to be patched to use a shorter AF_UNIX socket + # path on Darwin. See https://github.com/NixOS/nix/pull/1085 + "plasma-external-store-tests" + "plasma-client-tests" + ]; + in + '' + runHook preInstallCheck + + ctest -L unittest \ + --exclude-regex '^(${builtins.concatStringsSep "|" excludedTests})$' + + runHook postInstallCheck + ''; meta = with lib; { description = "A cross-language development platform for in-memory data"; diff --git a/pkgs/development/libraries/audio/mbelib/default.nix b/pkgs/development/libraries/audio/mbelib/default.nix index f13f6d7063cb..dc01027c4693 100644 --- a/pkgs/development/libraries/audio/mbelib/default.nix +++ b/pkgs/development/libraries/audio/mbelib/default.nix @@ -21,7 +21,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "P25 Phase 1 and ProVoice vocoder"; - homepage = https://github.com/szechyjs/mbelib; + homepage = "https://github.com/szechyjs/mbelib"; license = licenses.isc; platforms = platforms.unix; maintainers = with maintainers; [ andrew-d ]; diff --git a/pkgs/development/libraries/audio/zita-resampler/default.nix b/pkgs/development/libraries/audio/zita-resampler/default.nix index 3b3c005a015b..075ce33ef9e2 100644 --- a/pkgs/development/libraries/audio/zita-resampler/default.nix +++ b/pkgs/development/libraries/audio/zita-resampler/default.nix @@ -3,6 +3,7 @@ stdenv.mkDerivation rec { pname = "zita-resampler"; version = "1.8.0"; + src = fetchurl { url = "http://kokkinizita.linuxaudio.org/linuxaudio/downloads/${pname}-${version}.tar.bz2"; sha256 = "sha256-5XRPI8VN0Vs/eDpoe9h57uKmkKRUWhW0nEzwN6pGSqI="; @@ -13,9 +14,13 @@ stdenv.mkDerivation rec { "SUFFIX=" ]; - patchPhase = '' + postPatch = '' cd source - sed -e "s@ldconfig@@" -i Makefile + substituteInPlace Makefile \ + --replace 'ldconfig' "" + '' + lib.optionalString (!stdenv.targetPlatform.isx86_64) '' + substituteInPlace Makefile \ + --replace '-DENABLE_SSE2' "" ''; fixupPhase = '' diff --git a/pkgs/development/libraries/aws-c-mqtt/default.nix b/pkgs/development/libraries/aws-c-mqtt/default.nix index 92e5ad44b871..39a75c511622 100644 --- a/pkgs/development/libraries/aws-c-mqtt/default.nix +++ b/pkgs/development/libraries/aws-c-mqtt/default.nix @@ -6,7 +6,6 @@ , aws-c-http , aws-c-io , cmake -, ninja , s2n-tls }: @@ -23,7 +22,6 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ cmake - ninja ]; buildInputs = [ diff --git a/pkgs/development/libraries/aws-sdk-cpp/default.nix b/pkgs/development/libraries/aws-sdk-cpp/default.nix index 41603993c75d..25570b7d03a0 100644 --- a/pkgs/development/libraries/aws-sdk-cpp/default.nix +++ b/pkgs/development/libraries/aws-sdk-cpp/default.nix @@ -28,6 +28,8 @@ stdenv.mkDerivation rec { }; postPatch = '' + # Flaky on Hydra + rm aws-cpp-sdk-core-tests/aws/auth/AWSCredentialsProviderTest.cpp # Includes aws-c-auth private headers, so only works with submodule build rm aws-cpp-sdk-core-tests/aws/auth/AWSAuthSignerTest.cpp '' + lib.optionalString stdenv.hostPlatform.isMusl '' @@ -66,7 +68,6 @@ stdenv.mkDerivation rec { # fix build with gcc9, can be removed after bumping to current version NIX_CFLAGS_COMPILE = [ "-Wno-error" ]; - # aws-cpp-sdk-core-tests/aws/auth/AWSCredentialsProviderTest.cpp # aws-cpp-sdk-core-tests/aws/client/AWSClientTest.cpp # seem to have a datarace enableParallelChecking = false; diff --git a/pkgs/development/libraries/blitz/default.nix b/pkgs/development/libraries/blitz/default.nix index f47b051caadf..0b06bfd64834 100644 --- a/pkgs/development/libraries/blitz/default.nix +++ b/pkgs/development/libraries/blitz/default.nix @@ -52,7 +52,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "Fast multi-dimensional array library for C++"; - homepage = https://sourceforge.net/projects/blitz/; + homepage = "https://sourceforge.net/projects/blitz/"; license = licenses.lgpl3; platforms = platforms.unix; maintainers = with maintainers; [ ToxicFrog ]; diff --git a/pkgs/development/libraries/boxfort/default.nix b/pkgs/development/libraries/boxfort/default.nix index 93176fb230f1..ab2805a15e72 100644 --- a/pkgs/development/libraries/boxfort/default.nix +++ b/pkgs/development/libraries/boxfort/default.nix @@ -29,5 +29,7 @@ stdenv.mkDerivation rec { license = licenses.mit; maintainers = with maintainers; [ thesola10 Yumasi ]; platforms = platforms.unix; + # Upstream currently broken for macOS https://cirrus-ci.com/build/5624937369042944 + broken = stdenv.targetPlatform.isDarwin; }; } diff --git a/pkgs/development/libraries/cloog/default.nix b/pkgs/development/libraries/cloog/default.nix index 02a91050e7ba..bfca886e03d5 100644 --- a/pkgs/development/libraries/cloog/default.nix +++ b/pkgs/development/libraries/cloog/default.nix @@ -15,8 +15,9 @@ stdenv.mkDerivation rec { configureFlags = [ "--with-isl=system" ]; - # Breaks the test cases - #enableParallelBuilding = true; + enableParallelBuilding = true; + # Breaks the test cases as it reuses 'cloog_temp' file name for different tests. + enableParallelChecking = false; doCheck = true; diff --git a/pkgs/development/libraries/collada-dom/default.nix b/pkgs/development/libraries/collada-dom/default.nix new file mode 100644 index 000000000000..1cb5c4853969 --- /dev/null +++ b/pkgs/development/libraries/collada-dom/default.nix @@ -0,0 +1,35 @@ +{ stdenv, lib, fetchFromGitHub, cmake, boost, libxml2, minizip, readline }: + +stdenv.mkDerivation { + pname = "collada-dom"; + version = "unstable-2020-01-03"; + + src = fetchFromGitHub { + owner = "rdiankov"; + repo = "collada-dom"; + rev = "c1e20b7d6ff806237030fe82f126cb86d661f063"; + sha256 = "sha256-A1ne/D6S0shwCzb9spd1MoSt/238HWA8dvgd+DC9cXc="; + }; + + postInstall = '' + chmod +w -R $out + ln -s $out/include/*/* $out/include + ''; + + nativeBuildInputs = [ cmake ]; + + buildInputs = [ + boost + libxml2 + minizip + readline + ]; + + meta = with lib; { + description = "Lightweight version of collada-dom, with only the parser."; + homepage = "https://github.com/rdiankov/collada-dom"; + license = licenses.mit; + maintainers = with maintainers; [ marius851000 ]; + platforms = platforms.all; + }; +} diff --git a/pkgs/development/libraries/cpptoml/default.nix b/pkgs/development/libraries/cpptoml/default.nix new file mode 100644 index 000000000000..a3528444c6a1 --- /dev/null +++ b/pkgs/development/libraries/cpptoml/default.nix @@ -0,0 +1,34 @@ +{ lib, stdenv, fetchFromGitHub, cmake, libcxxCmakeModule ? false }: + +stdenv.mkDerivation rec { + pname = "cpptoml"; + version = "0.4.0"; + + src = fetchFromGitHub { + owner = "skystrife"; + repo = "cpptoml"; + rev = "fededad7169e538ca47e11a9ee9251bc361a9a65"; + sha256 = "0zlgdlk9nsskmr8xc2ajm6mn1x5wz82ssx9w88s02icz71mcihrx"; + }; + + nativeBuildInputs = [ cmake ]; + + cmakeFlags = [ + # If this package is built with clang it will attempt to + # use libcxx via the Cmake find_package interface. + # The default libcxx stdenv in llvmPackages doesn't provide + # this and so will fail. + "-DENABLE_LIBCXX=${if libcxxCmakeModule then "ON" else "OFF"}" + "-DCPPTOML_BUILD_EXAMPLES=OFF" + ]; + + outputs = [ "out" ]; + + meta = with lib; { + description = "C++ TOML configuration library"; + homepage = "https://github.com/skystrife/cpptoml"; + license = licenses.mit; + maintainers = with maintainers; [ photex ]; + platforms = platforms.all; + }; +} diff --git a/pkgs/development/libraries/crc32c/default.nix b/pkgs/development/libraries/crc32c/default.nix index 521ae7f216d7..4a8afcfc2b3e 100644 --- a/pkgs/development/libraries/crc32c/default.nix +++ b/pkgs/development/libraries/crc32c/default.nix @@ -29,6 +29,8 @@ stdenv.mkDerivation rec { "-DCRC32C_BUILD_BENCHMARKS=0" "-DCRC32C_USE_GLOG=0" "-DBUILD_SHARED_LIBS=${if staticOnly then "0" else "1"}" + ] ++ lib.optionals stdenv.isDarwin [ + "-DCMAKE_SKIP_BUILD_RPATH=OFF" # for tests ]; doCheck = false; diff --git a/pkgs/development/libraries/exiv2/default.nix b/pkgs/development/libraries/exiv2/default.nix index 930bfc99f28e..e532898f80e2 100644 --- a/pkgs/development/libraries/exiv2/default.nix +++ b/pkgs/development/libraries/exiv2/default.nix @@ -15,7 +15,7 @@ stdenv.mkDerivation rec { pname = "exiv2"; - version = "0.27.4"; + version = "0.27.5"; outputs = [ "out" "dev" "doc" "man" ]; @@ -23,7 +23,7 @@ stdenv.mkDerivation rec { owner = "exiv2"; repo = "exiv2"; rev = "v${version}"; - sha256 = "0m1x79q6i5fw3gr9k0dw0bbl7ym27g9vbmxiamks6yw028xqwc5a"; + sha256 = "sha256-5kdzw/YzpYldfHjUSPOzu3gW2TPgxt8Oxs0LZDFphgA="; }; nativeBuildInputs = [ diff --git a/pkgs/development/libraries/ffmpeg/2.8.nix b/pkgs/development/libraries/ffmpeg/2.8.nix deleted file mode 100644 index 0df810ff10b0..000000000000 --- a/pkgs/development/libraries/ffmpeg/2.8.nix +++ /dev/null @@ -1,11 +0,0 @@ -{ callPackage, ... } @ args: - -callPackage ./generic.nix (rec { - version = "${branch}.17"; - branch = "2.8"; - sha256 = "05bnhvs2f82aq95z1wd3wr42sljdfq4kiyzqwhpji983mndx14vl"; - knownVulnerabilities = [ - "CVE-2021-30123" - ]; - doCheck = false; -} // args) diff --git a/pkgs/development/libraries/freeimage/default.nix b/pkgs/development/libraries/freeimage/default.nix index 87997cead43f..2b4b174ca31b 100644 --- a/pkgs/development/libraries/freeimage/default.nix +++ b/pkgs/development/libraries/freeimage/default.nix @@ -24,6 +24,9 @@ stdenv.mkDerivation { --replace "pkg-config" "$PKG_CONFIG" substituteInPlace Makefile.gnu \ --replace "pkg-config" "$PKG_CONFIG" + '' + lib.optionalString (stdenv.isDarwin && stdenv.isAarch64) '' + # Upstream Makefile hardcodes i386 and x86_64 architectures only + substituteInPlace Makefile.osx --replace "x86_64" "arm64" ''; nativeBuildInputs = [ diff --git a/pkgs/development/libraries/gamenetworkingsockets/default.nix b/pkgs/development/libraries/gamenetworkingsockets/default.nix index 0546bfb8e08e..8fcb5b2230e0 100644 --- a/pkgs/development/libraries/gamenetworkingsockets/default.nix +++ b/pkgs/development/libraries/gamenetworkingsockets/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "GameNetworkingSockets"; - version = "1.2.0"; + version = "1.3.0"; src = fetchFromGitHub { owner = "ValveSoftware"; repo = pname; rev = "v${version}"; - sha256 = "1zghyc4liml8gzxflyh5gp6zi11ny6ng5hv9wyqvp32rfx221gc6"; + sha256 = "1d3k1ciw8c8rznxsr4bfmw0f0srblpflv8xqavhcxx2zwvaya78c"; }; nativeBuildInputs = [ cmake ninja go ]; @@ -18,11 +18,10 @@ stdenv.mkDerivation rec { # tmp home for go preBuild = "export HOME=\"$TMPDIR\""; - buildInputs = [ protobuf openssl ]; + buildInputs = [ protobuf ]; + propagatedBuildInputs = [ openssl ]; meta = with lib; { - # build failure is resolved on master, remove at next release - broken = stdenv.isDarwin; description = "GameNetworkingSockets is a basic transport layer for games"; license = licenses.bsd3; platforms = platforms.unix; diff --git a/pkgs/development/libraries/gexiv2/default.nix b/pkgs/development/libraries/gexiv2/default.nix index a556b64f1d38..0cf505660040 100644 --- a/pkgs/development/libraries/gexiv2/default.nix +++ b/pkgs/development/libraries/gexiv2/default.nix @@ -55,13 +55,15 @@ stdenv.mkDerivation rec { doCheck = true; - preCheck = '' + preCheck = let + libSuffix = if stdenv.isDarwin then "2.dylib" else "so.2"; + in '' # Our gobject-introspection patches make the shared library paths absolute # in the GIR files. When running unit tests, the library is not yet installed, # though, so we need to replace the absolute path with a local one during build. # We are using a symlink that will be overridden during installation. mkdir -p $out/lib - ln -s $PWD/gexiv2/libgexiv2.so.2 $out/lib/libgexiv2.so.2 + ln -s $PWD/gexiv2/libgexiv2.${libSuffix} $out/lib/libgexiv2.${libSuffix} ''; passthru = { diff --git a/pkgs/development/libraries/giflib/default.nix b/pkgs/development/libraries/giflib/default.nix index 9eaf7b933d43..c86b706e13c8 100644 --- a/pkgs/development/libraries/giflib/default.nix +++ b/pkgs/development/libraries/giflib/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchurl, fetchpatch, xmlto, docbook_xml_dtd_412, docbook_xsl, libxml2, fixDarwinDylibNames }: +{ lib, stdenv, fetchurl, fetchpatch, xmlto, docbook_xml_dtd_412, docbook_xsl, libxml2, fixDarwinDylibNames, pkgsStatic }: stdenv.mkDerivation rec { name = "giflib-5.2.1"; @@ -19,12 +19,21 @@ stdenv.mkDerivation rec { postPatch = '' substituteInPlace Makefile \ --replace 'PREFIX = /usr/local' 'PREFIX = ${builtins.placeholder "out"}' + '' + # Upstream build system does not support NOT building shared libraries. + + lib.optionalString stdenv.hostPlatform.isStatic '' + sed -i '/all:/ s/libgif.so//' Makefile + sed -i '/all:/ s/libutil.so//' Makefile + sed -i '/-m 755 libgif.so/ d' Makefile + sed -i '/ln -sf libgif.so/ d' Makefile ''; nativeBuildInputs = lib.optionals stdenv.isDarwin [ fixDarwinDylibNames ]; buildInputs = [ xmlto docbook_xml_dtd_412 docbook_xsl libxml2 ]; + passthru.tests.static = pkgsStatic.giflib; + meta = { description = "A library for reading and writing gif images"; platforms = lib.platforms.unix; diff --git a/pkgs/development/libraries/glibc/common.nix b/pkgs/development/libraries/glibc/common.nix index 3f78ef4041a6..007346649fab 100644 --- a/pkgs/development/libraries/glibc/common.nix +++ b/pkgs/development/libraries/glibc/common.nix @@ -198,7 +198,7 @@ stdenv.mkDerivation ({ BASH_SHELL = "/bin/sh"; # Used by libgcc, elf-header, and others to determine ABI - passthru = { inherit version; }; + passthru = { inherit version; minorRelease = version; }; } // (removeAttrs args [ "withLinuxHeaders" "withGd" ]) // @@ -286,9 +286,4 @@ stdenv.mkDerivation ({ // lib.optionalAttrs (stdenv.hostPlatform != stdenv.buildPlatform) { preInstall = null; # clobber the native hook - - # To avoid a dependency on the build system 'bash'. - preFixup = '' - rm -f $bin/bin/{ldd,tzselect,catchsegv,xtrace} - ''; }) diff --git a/pkgs/development/libraries/glibc/mtrace.nix b/pkgs/development/libraries/glibc/mtrace.nix new file mode 100644 index 000000000000..fed24aff2796 --- /dev/null +++ b/pkgs/development/libraries/glibc/mtrace.nix @@ -0,0 +1,38 @@ +{ glibc, perl }: + +# Small wrapper which only exposes `mtrace(3)` from `glibc`. This can't be placed +# into `glibc` itself because it depends on Perl which would mean that the final +# `glibc` inside a stdenv bootstrap has a dependency `glibc -> perl -> bootstrap tools`, +# so this is now in its own package that isn't used for bootstrapping. +# +# `glibc` needs to be overridden here because it's still needed to `./configure` the source in order +# to have a build environment where we can call the needed make target. + +glibc.overrideAttrs ({ meta ? {}, ... }: { + pname = "glibc-mtrace"; + + buildPhase = '' + runHook preBuild + + mkdir malloc + make -C ../glibc-${glibc.minorRelease}/malloc objdir=`pwd` `pwd`/malloc/mtrace; + + runHook postBuild + ''; + + installPhase = '' + mkdir -p $out/bin + mv malloc/mtrace $out/bin/ + ''; + + # Perl interpreter used for `mtrace`. + buildInputs = [ perl ]; + + # Reset a few things declared by `pkgs.glibc`. + outputs = [ "out" ]; + separateDebugInfo = false; + + meta = meta // { + description = "Perl script used to interpret and provide human readable output of the trace log contained in the file mtracedata, whose contents were produced by mtrace(3)."; + }; +}) diff --git a/pkgs/development/libraries/glog/default.nix b/pkgs/development/libraries/glog/default.nix index 4bb20ebfd93e..72758a1b3e77 100644 --- a/pkgs/development/libraries/glog/default.nix +++ b/pkgs/development/libraries/glog/default.nix @@ -2,43 +2,46 @@ stdenv.mkDerivation rec { pname = "glog"; - version = "0.4.0"; + version = "0.5.0"; src = fetchFromGitHub { owner = "google"; repo = "glog"; rev = "v${version}"; - sha256 = "1xd3maiipfbxmhc9rrblc5x52nxvkwxp14npg31y5njqvkvzax9b"; + sha256 = "17014q25c99qyis6l3fwxidw6222bb269fdlr74gn7pzmzg4lvg3"; }; - patches = lib.optionals stdenv.hostPlatform.isMusl [ - # TODO: Remove at next release that includes this commit. + patches = [ + # Fix duplicate-concatenated nix store path in cmake file, see: + # https://github.com/NixOS/nixpkgs/pull/144561#issuecomment-960296043 + # TODO: Remove when https://github.com/google/glog/pull/733 is merged and available. (fetchpatch { - name = "glog-Fix-symbolize_unittest-for-musl-builds.patch"; - url = "https://github.com/google/glog/commit/834dd780bf1fe0704b8ed0350ca355a55f711a9f.patch"; - sha256 = "0k4lanxg85anyvjsj3mh93bcgds8gizpiamcy2zvs3yyfjl40awn"; + name = "glog-cmake-Fix-incorrect-relative-path-concatenation.patch"; + url = "https://github.com/google/glog/pull/733/commits/57c636c02784f909e4b5d3c2f0ecbdbb47097266.patch"; + sha256 = "1py93gkzmcyi2ypcwyj3nri210z8fmlaif51yflzmrrv507zd7bi"; }) ]; - postPatch = lib.optionalString stdenv.isDarwin '' - # A path clash on case-insensitive file systems blocks creation of the build directory. - # The file in question is specific to bazel and does not influence the build result. - rm BUILD - ''; - nativeBuildInputs = [ cmake ]; propagatedBuildInputs = [ gflags ]; - cmakeFlags = [ "-DBUILD_SHARED_LIBS=ON" ]; + cmakeFlags = [ + "-DBUILD_SHARED_LIBS=ON" + # Mak CMake place RPATHs such that tests will find the built libraries. + # See https://github.com/NixOS/nixpkgs/pull/144561#discussion_r742468811 and https://github.com/NixOS/nixpkgs/pull/108496 + "-DCMAKE_SKIP_BUILD_RPATH=OFF" + ]; + # TODO: Re-enable Darwin tests once we're on a release that has https://github.com/google/glog/issues/709#issuecomment-960381653 fixed + doCheck = !stdenv.isDarwin; checkInputs = [ perl ]; - doCheck = false; # fails with "Mangled symbols (28 out of 380) found in demangle.dm" meta = with lib; { homepage = "https://github.com/google/glog"; license = licenses.bsd3; description = "Library for application-level logging"; platforms = platforms.unix; + maintainers = with maintainers; [ nh2 r-burns ]; }; } diff --git a/pkgs/development/libraries/google-cloud-cpp/default.nix b/pkgs/development/libraries/google-cloud-cpp/default.nix index d493f31d3750..870e919357e0 100644 --- a/pkgs/development/libraries/google-cloud-cpp/default.nix +++ b/pkgs/development/libraries/google-cloud-cpp/default.nix @@ -1,76 +1,128 @@ { lib , stdenv -, clang-tools -, grpc -, curl -, cmake -, pkg-config , fetchFromGitHub -, doxygen -, protobuf +, abseil-cpp +, c-ares +, cmake , crc32c -, fetchurl -, openssl -, libnsl +, curl +, gbenchmark +, grpc +, gtest +, ninja +, nlohmann_json +, pkg-config +, protobuf + # default list of APIs: https://github.com/googleapis/google-cloud-cpp/blob/v1.32.1/CMakeLists.txt#L173 +, apis ? [ "*" ] +, staticOnly ? stdenv.hostPlatform.isStatic }: let + googleapisRev = "ed739492993c4a99629b6430affdd6c0fb59d435"; googleapis = fetchFromGitHub { owner = "googleapis"; repo = "googleapis"; - rev = "9c9f778aedde02f9826d2ae5d0f9c96409ba0f25"; - sha256 = "1gd3nwv8qf503wy6km0ad6akdvss9w5b1k3jqizy5gah1fkirkpi"; + rev = googleapisRev; + hash = "sha256:1xrnh77vb8hxmf1ywqsifzd39kylhbdyah0b0b9bm7nw0mnahssl"; }; - googleapis-cpp-cmakefiles = stdenv.mkDerivation rec { - pname = "googleapis-cpp-cmakefiles"; - version = "0.1.5"; - src = fetchFromGitHub { - owner = "googleapis"; - repo = "cpp-cmakefiles"; - rev = "v${version}"; - sha256 = "02zkcq2wl831ayd9qy009xvfx7q80pgycx7mzz9vknwd0nn6dd0n"; - }; - - nativeBuildInputs = [ cmake pkg-config ]; - buildInputs = [ grpc openssl protobuf ]; - - postPatch = '' - sed -e 's,https://github.com/googleapis/googleapis/archive/9c9f778aedde02f9826d2ae5d0f9c96409ba0f25.tar.gz,file://${googleapis},' \ - -i CMakeLists.txt - ''; - }; - _nlohmann_json = fetchurl { - url = "https://github.com/nlohmann/json/releases/download/v3.4.0/json.hpp"; - sha256 = "0pw3jpi572irbp2dqclmyhgic6k9rxav5mpp9ygbp9xj48gnvnk3"; - }; -in stdenv.mkDerivation rec { + excludedTests = builtins.fromTOML (builtins.readFile ./skipped_tests.toml); +in +stdenv.mkDerivation rec { pname = "google-cloud-cpp"; - version = "0.14.0"; + version = "1.32.1"; src = fetchFromGitHub { owner = "googleapis"; repo = "google-cloud-cpp"; rev = "v${version}"; - sha256 = "15wci4m8h6py7fqfziq8mp5m6pxp2h1cbh5rp2k90mk5js4jb9pa"; + sha256 = "0g720sni70nlncv4spm4rlfykdkpjnv81axfz2jd1arpdajm0mg9"; }; - buildInputs = [ curl crc32c googleapis-cpp-cmakefiles grpc protobuf libnsl ]; - nativeBuildInputs = [ clang-tools cmake pkg-config doxygen ]; - - outputs = [ "out" "dev" ]; - postPatch = '' - sed -e 's,https://github.com/nlohmann/json/releases/download/v3.4.0/json.hpp,file://${_nlohmann_json},' \ - -i cmake/DownloadNlohmannJson.cmake + substituteInPlace external/googleapis/CMakeLists.txt \ + --replace "https://github.com/googleapis/googleapis/archive/${googleapisRev}.tar.gz" "file://${googleapis}" ''; + nativeBuildInputs = [ + cmake + ninja + pkg-config + ] ++ lib.optionals (!doInstallCheck) [ + # enable these dependencies when doInstallCheck failse because we're + # unconditionally building tests and benchmarks + # + # when doInstallCheck is true, these deps are added to installCheckInputs + gbenchmark + gtest + ]; + + buildInputs = [ + abseil-cpp + c-ares + crc32c + curl + grpc + nlohmann_json + protobuf + ]; + + doInstallCheck = true; + + preInstallCheck = + let + # These paths are added to (DY)LD_LIBRARY_PATH because they contain + # testing-only shared libraries that do not need to be installed, but + # need to be loadable by the test executables. + # + # Setting (DY)LD_LIBRARY_PATH is only necessary when building shared libraries. + additionalLibraryPaths = [ + "$PWD/google/cloud/bigtable" + "$PWD/google/cloud/bigtable/benchmarks" + "$PWD/google/cloud/pubsub" + "$PWD/google/cloud/spanner" + "$PWD/google/cloud/spanner/benchmarks" + "$PWD/google/cloud/storage" + "$PWD/google/cloud/storage/benchmarks" + "$PWD/google/cloud/testing_util" + ]; + ldLibraryPathName = "${lib.optionalString stdenv.isDarwin "DY"}LD_LIBRARY_PATH"; + in + lib.optionalString doInstallCheck ( + lib.optionalString (!staticOnly) '' + export ${ldLibraryPathName}=${lib.concatStringsSep ":" additionalLibraryPaths} + '' + '' + export GTEST_FILTER="-${lib.concatStringsSep ":" excludedTests.cases}" + '' + ); + + installCheckPhase = lib.optionalString doInstallCheck '' + runHook preInstallCheck + + # disable tests that contact the internet + ctest --exclude-regex '^(${lib.concatStringsSep "|" excludedTests.whole})' + + runHook postInstallCheck + ''; + + installCheckInputs = lib.optionals doInstallCheck [ + gbenchmark + gtest + ]; + cmakeFlags = [ - "-DBUILD_SHARED_LIBS:BOOL=ON" + "-DBUILD_SHARED_LIBS:BOOL=${if staticOnly then "OFF" else "ON"}" + # unconditionally build tests to catch linker errors as early as possible + # this adds a good chunk of time to the build + "-DBUILD_TESTING:BOOL=ON" + "-DGOOGLE_CLOUD_CPP_ENABLE_EXAMPLES:BOOL=OFF" + ] ++ lib.optionals (apis != [ "*" ]) [ + "-DGOOGLE_CLOUD_CPP_ENABLE=${lib.concatStringsSep ";" apis}" ]; meta = with lib; { license = with licenses; [ asl20 ]; homepage = "https://github.com/googleapis/google-cloud-cpp"; description = "C++ Idiomatic Clients for Google Cloud Platform services"; - maintainers = with maintainers; [ ]; + maintainers = with maintainers; [ cpcloud ]; }; } diff --git a/pkgs/development/libraries/google-cloud-cpp/skipped_tests.toml b/pkgs/development/libraries/google-cloud-cpp/skipped_tests.toml new file mode 100644 index 000000000000..c2fb2a24483a --- /dev/null +++ b/pkgs/development/libraries/google-cloud-cpp/skipped_tests.toml @@ -0,0 +1,112 @@ +whole = [ + "bigquery_bigquery_read_integration_test", + "bigtable_admin_backup_integration_test", + "bigtable_admin_iam_policy_integration_test", + "bigtable_admin_integration_test", + "bigtable_apply_read_latency_benchmark", + "bigtable_data_async_future_integration_test", + "bigtable_data_integration_test", + "bigtable_endurance_benchmark", + "bigtable_filters_integration_test", + "bigtable_mutation_batcher_throughput_benchmark", + "bigtable_mutations_integration_test", + "bigtable_read_sync_vs_async_benchmark", + "bigtable_scan_throughput_benchmark", + "bigtable_table_sample_rows_integration_test", + "iam_iam_credentials_integration_test", + "iam_iam_integration_test", + "pubsub_endurance", + "pubsub_schema_admin_integration_test", + "pubsub_subscriber_integration_test", + "pubsub_subscription_admin_integration_test", + "pubsub_throughput", + "pubsub_topic_admin_integration_test", + "spanner_admin_backup_extra_integration_test", + "spanner_admin_database_admin_integration_test", + "spanner_admin_instance_admin_integration_test", + "spanner_backup_extra_integration_test", + "spanner_client_integration_test", + "spanner_client_stress_test", + "spanner_data_types_integration_test", + "spanner_database_admin_integration_test", + "spanner_instance_admin_integration_test", + "spanner_multiple_rows_cpu_benchmark", + "spanner_rpc_failure_threshold_integration_test", + "spanner_session_pool_integration_test", + "spanner_single_row_throughput_benchmark", + "storage_aggregate_download_throughput_benchmark", + "storage_aggregate_upload_throughput_benchmark", + "storage_alternative_endpoint_integration_test", + "storage_auto_finalize_integration_test", + "storage_bucket_integration_test", + "storage_create_client_integration_test", + "storage_create_dataset", + "storage_curl_download_request_integration_test", + "storage_curl_request_integration_test", + "storage_curl_resumable_upload_session_integration_test", + "storage_curl_sign_blob_integration_test", + "storage_grpc_integration_test", + "storage_key_file_integration_test", + "storage_minimal_iam_credentials_rest_integration_test", + "storage_object_basic_crud_integration_test", + "storage_object_checksum_integration_test", + "storage_object_compose_many_integration_test", + "storage_object_file_integration_test", + "storage_object_hash_integration_test", + "storage_object_insert_integration_test", + "storage_object_insert_preconditions_integration_test", + "storage_object_integration_test", + "storage_object_list_objects_versions_integration_test", + "storage_object_media_integration_test", + "storage_object_parallel_upload_integration_test", + "storage_object_plenty_clients_serially_integration_test", + "storage_object_plenty_clients_simultaneously_integration_test", + "storage_object_read_headers_integration_test", + "storage_object_read_preconditions_integration_test", + "storage_object_read_range_integration_test", + "storage_object_read_stream_integration_test", + "storage_object_resumable_parallel_upload_integration_test", + "storage_object_resumable_write_integration_test", + "storage_object_rewrite_integration_test", + "storage_object_write_preconditions_integration_test", + "storage_object_write_stream_integration_test", + "storage_object_write_streambuf_integration_test", + "storage_service_account_integration_test", + "storage_signed_url_integration_test", + "storage_small_reads_integration_test", + "storage_storage_file_transfer_benchmark", + "storage_storage_parallel_uploads_benchmark", + "storage_storage_throughput_vs_cpu_benchmark", + "storage_thread_integration_test", + "storage_throughput_experiment_test", + "storage_tracing_integration_test", + "storage_unified_credentials_integration_test", + "common_grpc_utils_internal_grpc_impersonate_service_account_integration_test" +] +cases = [ + "BackupExtraIntegrationTest.CreateBackupWithExpiredVersionTime", + "BackupExtraIntegrationTest.BackupWithExpiredVersionTime", + "BackupExtraIntegrationTest.BackupWithFutureVersionTime", + "BackupExtraIntegrationTest.CreateBackupWithFutureVersionTime", + "DatabaseAdminClientTest.CreateWithEncryptionKey", + "DatabaseAdminClientTest.CreateWithNonexistentEncryptionKey", + "DatabaseAdminClientTest.DatabaseBasicCRUD", + "DatabaseAdminClientTest.VersionRetentionPeriodCreate", + "DatabaseAdminClientTest.VersionRetentionPeriodCreateFailure", + "DatabaseAdminClientTest.VersionRetentionPeriodUpdate", + "DatabaseAdminClientTest.VersionRetentionPeriodUpdateFailure", + "InstanceAdminClientTest.InstanceConfig", + "InstanceAdminClientTest.InstanceIam", + "InstanceAdminClientTest.InstanceReadOperations", + "LoggingIntegrationTest.ListMonitoredResourceDescriptors", + "LoggingIntegrationTest.WriteLogEntries", + "ObjectFileMultiThreadedTest.Download", + "SubscriberIntegrationTest.FireAndForget", + "SubscriberIntegrationTest.PublishOrdered", + "SubscriberIntegrationTest.PublishPullAck", + "SubscriberIntegrationTest.RawStub", + "SubscriberIntegrationTest.ReportNotFound", + "SubscriberIntegrationTest.StreamingSubscriptionBatchSource", + "SubscriptionAdminIntegrationTest.SubscriptionCRUD", + "TopicAdminIntegrationTest.TopicCRUD" +] diff --git a/pkgs/development/libraries/graphene/default.nix b/pkgs/development/libraries/graphene/default.nix index a8e0d1179826..a0bfc6f017ad 100644 --- a/pkgs/development/libraries/graphene/default.nix +++ b/pkgs/development/libraries/graphene/default.nix @@ -67,9 +67,13 @@ stdenv.mkDerivation rec { PATH=${python3.withPackages (pp: [ pp.pygobject3 pp.tappy ])}/bin:$PATH patchShebangs tests/introspection.py ''; - postFixup = '' - wrapProgram "${placeholder "installedTests"}/libexec/installed-tests/graphene-1.0/introspection.py" \ - --prefix GI_TYPELIB_PATH : "$out/lib/girepository-1.0" + postFixup = let + introspectionPy = "${placeholder "installedTests"}/libexec/installed-tests/graphene-1.0/introspection.py"; + in '' + if [ -x '${introspectionPy}' ] ; then + wrapProgram '${introspectionPy}' \ + --prefix GI_TYPELIB_PATH : "$out/lib/girepository-1.0" + fi ''; passthru = { diff --git a/pkgs/development/libraries/gtkimageview/default.nix b/pkgs/development/libraries/gtkimageview/default.nix index 1e910e3bcf40..fb63d4f00c1d 100644 --- a/pkgs/development/libraries/gtkimageview/default.nix +++ b/pkgs/development/libraries/gtkimageview/default.nix @@ -20,7 +20,7 @@ stdenv.mkDerivation rec { doCheck = true; meta = { - homepage = "https://wiki.gnome.org/Projects/GTK%2B/GtkImageView"; + homepage = "https://wiki.gnome.org/Projects/GTK/GtkImageView"; description = "Image viewer widget for GTK"; diff --git a/pkgs/development/libraries/id3lib/default.nix b/pkgs/development/libraries/id3lib/default.nix index 141be2092a50..8f5512e94db5 100644 --- a/pkgs/development/libraries/id3lib/default.nix +++ b/pkgs/development/libraries/id3lib/default.nix @@ -1,4 +1,4 @@ -{lib, stdenv, fetchurl, zlib}: +{ lib, stdenv, fetchurl, libiconv, zlib }: stdenv.mkDerivation rec { pname = "id3lib"; @@ -9,7 +9,7 @@ stdenv.mkDerivation rec { ./patch_id3lib_3.8.3_UTF16_writing_bug.diff ]; - buildInputs = [ zlib ]; + buildInputs = [ libiconv zlib ]; src = fetchurl { url = "mirror://sourceforge/id3lib/${pname}-${version}.tar.gz"; diff --git a/pkgs/development/libraries/intel-media-driver/default.nix b/pkgs/development/libraries/intel-media-driver/default.nix index 6002b8c84bb3..ef422380557a 100644 --- a/pkgs/development/libraries/intel-media-driver/default.nix +++ b/pkgs/development/libraries/intel-media-driver/default.nix @@ -13,7 +13,7 @@ stdenv.mkDerivation rec { pname = "intel-media-driver"; - version = "21.3.5"; + version = "21.4.1"; outputs = [ "out" "dev" ]; @@ -21,7 +21,7 @@ stdenv.mkDerivation rec { owner = "intel"; repo = "media-driver"; rev = "intel-media-${version}"; - sha256 = "1wc8qhz1j4z42jmnsr38y15kc0jhfqfx8ssnb5055kmmmvzwk1sh"; + sha256 = "1gf3gkxr68n8ca5bk269w469jykq90z8d3a9v0gag02cl1d6ca3i"; }; patches = [ diff --git a/pkgs/development/libraries/isl/0.14.1.nix b/pkgs/development/libraries/isl/0.14.1.nix index 8936d6c5f3be..87243def1796 100644 --- a/pkgs/development/libraries/isl/0.14.1.nix +++ b/pkgs/development/libraries/isl/0.14.1.nix @@ -4,7 +4,10 @@ stdenv.mkDerivation rec { name = "isl-0.14.1"; src = fetchurl { - url = "http://isl.gforge.inria.fr/${name}.tar.xz"; + urls = [ + "mirror://sourceforge/libisl/${name}.tar.xz" + "https://libisl.sourceforge.io/${name}.tar.xz" + ]; sha256 = "0xa6xagah5rywkywn19rzvbvhfvkmylhcxr6z9z7bz29cpiwk0l8"; }; diff --git a/pkgs/development/libraries/isl/0.17.1.nix b/pkgs/development/libraries/isl/0.17.1.nix index a823b69fa27b..a066655d4a05 100644 --- a/pkgs/development/libraries/isl/0.17.1.nix +++ b/pkgs/development/libraries/isl/0.17.1.nix @@ -4,7 +4,10 @@ stdenv.mkDerivation rec { name = "isl-0.17.1"; src = fetchurl { - url = "http://isl.gforge.inria.fr/${name}.tar.xz"; + urls = [ + "mirror://sourceforge/libisl/${name}.tar.xz" + "https://libisl.sourceforge.io/${name}.tar.xz" + ]; sha256 = "be152e5c816b477594f4c6194b5666d8129f3a27702756ae9ff60346a8731647"; }; diff --git a/pkgs/development/libraries/isl/0.20.0.nix b/pkgs/development/libraries/isl/0.20.0.nix index c40b3d7be0b4..d68637ddbcde 100644 --- a/pkgs/development/libraries/isl/0.20.0.nix +++ b/pkgs/development/libraries/isl/0.20.0.nix @@ -4,7 +4,11 @@ stdenv.mkDerivation rec { name = "isl-0.20"; src = fetchurl { - url = "http://isl.gforge.inria.fr/${name}.tar.xz"; + urls = [ + "mirror://sourceforge/libisl/${name}.tar.xz" + "https://libisl.sourceforge.io/${name}.tar.xz" + ]; + sha256 = "1akpgq0rbqbah5517blg2zlnfvjxfcl9cjrfc75nbcx5p2gnlnd5"; }; diff --git a/pkgs/development/libraries/jabcode/default.nix b/pkgs/development/libraries/jabcode/default.nix index 36c4c8c61c53..314a0cdf7eff 100644 --- a/pkgs/development/libraries/jabcode/default.nix +++ b/pkgs/development/libraries/jabcode/default.nix @@ -2,7 +2,9 @@ , fetchFromGitHub , lib , subproject ? "library" # one of "library", "reader" or "writer" -, zlib, libpng, libtiff +, zlib +, libpng +, libtiff , jabcode }: let @@ -11,9 +13,10 @@ let "reader" = "jabcodeReader"; "writer" = "jabcodeWriter"; }; -in stdenv.mkDerivation rec { +in +stdenv.mkDerivation rec { pname = "jabcode-${subproject}"; - version = "git-2020-05-13"; + version = "unstable-2020-05-13"; src = fetchFromGitHub { repo = "jabcode"; owner = "jabcode"; @@ -27,13 +30,14 @@ in stdenv.mkDerivation rec { preConfigure = "cd src/${subdir}"; - installPhase = if subproject == "library" then '' - mkdir -p $out/lib - cp build/* $out/lib - '' else '' - mkdir -p $out/bin - cp -RT bin $out/bin - ''; + installPhase = + if subproject == "library" then '' + mkdir -p $out/lib + cp build/* $out/lib + '' else '' + mkdir -p $out/bin + cp -RT bin $out/bin + ''; meta = with lib; { description = "A high-capacity 2D color bar code (${subproject})"; diff --git a/pkgs/development/libraries/kde-frameworks/baloo.nix b/pkgs/development/libraries/kde-frameworks/baloo.nix index 7b092653a327..0c8f181a188a 100644 --- a/pkgs/development/libraries/kde-frameworks/baloo.nix +++ b/pkgs/development/libraries/kde-frameworks/baloo.nix @@ -12,6 +12,6 @@ mkDerivation { kauth kconfig kcrash kdbusaddons ki18n kio kidletime lmdb qtdeclarative solid ]; - outputs = [ "dev" "out" ]; + outputs = [ "out" "dev" ]; propagatedBuildInputs = [ kcoreaddons kfilemetadata qtbase ]; } diff --git a/pkgs/development/libraries/languagemachines/frog.nix b/pkgs/development/libraries/languagemachines/frog.nix index a44535fbf90e..130fc60a12c9 100644 --- a/pkgs/development/libraries/languagemachines/frog.nix +++ b/pkgs/development/libraries/languagemachines/frog.nix @@ -5,7 +5,7 @@ }: let - release = builtins.fromJSON (builtins.readFile ./release-info/LanguageMachines-frog.json); + release = lib.importJSON ./release-info/LanguageMachines-frog.json; in stdenv.mkDerivation { diff --git a/pkgs/development/libraries/languagemachines/frogdata.nix b/pkgs/development/libraries/languagemachines/frogdata.nix index 7e890a8d09c9..61134a8ebfb3 100644 --- a/pkgs/development/libraries/languagemachines/frogdata.nix +++ b/pkgs/development/libraries/languagemachines/frogdata.nix @@ -3,7 +3,7 @@ }: let - release = builtins.fromJSON (builtins.readFile ./release-info/LanguageMachines-frogdata.json); + release = lib.importJSON ./release-info/LanguageMachines-frogdata.json; in stdenv.mkDerivation { diff --git a/pkgs/development/libraries/languagemachines/libfolia.nix b/pkgs/development/libraries/languagemachines/libfolia.nix index fc5e622bcf4f..3137d8646833 100644 --- a/pkgs/development/libraries/languagemachines/libfolia.nix +++ b/pkgs/development/libraries/languagemachines/libfolia.nix @@ -4,7 +4,7 @@ , languageMachines }: let - release = builtins.fromJSON (builtins.readFile ./release-info/LanguageMachines-libfolia.json); + release = lib.importJSON ./release-info/LanguageMachines-libfolia.json; in stdenv.mkDerivation { diff --git a/pkgs/development/libraries/languagemachines/mbt.nix b/pkgs/development/libraries/languagemachines/mbt.nix index efa9ada7d56c..49fc3c850ae8 100644 --- a/pkgs/development/libraries/languagemachines/mbt.nix +++ b/pkgs/development/libraries/languagemachines/mbt.nix @@ -5,7 +5,7 @@ }: let - release = builtins.fromJSON (builtins.readFile ./release-info/LanguageMachines-mbt.json); + release = lib.importJSON ./release-info/LanguageMachines-mbt.json; in stdenv.mkDerivation { diff --git a/pkgs/development/libraries/languagemachines/ticcutils.nix b/pkgs/development/libraries/languagemachines/ticcutils.nix index c09f00b1160b..53bbd131bfaf 100644 --- a/pkgs/development/libraries/languagemachines/ticcutils.nix +++ b/pkgs/development/libraries/languagemachines/ticcutils.nix @@ -3,7 +3,7 @@ , libxml2, zlib, bzip2, libtar }: let - release = builtins.fromJSON (builtins.readFile ./release-info/LanguageMachines-ticcutils.json); + release = lib.importJSON ./release-info/LanguageMachines-ticcutils.json; in stdenv.mkDerivation { diff --git a/pkgs/development/libraries/languagemachines/timbl.nix b/pkgs/development/libraries/languagemachines/timbl.nix index de22c41ec497..9ca0b080a21d 100644 --- a/pkgs/development/libraries/languagemachines/timbl.nix +++ b/pkgs/development/libraries/languagemachines/timbl.nix @@ -5,7 +5,7 @@ }: let - release = builtins.fromJSON (builtins.readFile ./release-info/LanguageMachines-timbl.json); + release = lib.importJSON ./release-info/LanguageMachines-timbl.json; in stdenv.mkDerivation { diff --git a/pkgs/development/libraries/languagemachines/timblserver.nix b/pkgs/development/libraries/languagemachines/timblserver.nix index 27812e8b3f05..42bc5edb43f7 100644 --- a/pkgs/development/libraries/languagemachines/timblserver.nix +++ b/pkgs/development/libraries/languagemachines/timblserver.nix @@ -5,7 +5,7 @@ }: let - release = builtins.fromJSON (builtins.readFile ./release-info/LanguageMachines-timblserver.json); + release = lib.importJSON ./release-info/LanguageMachines-timblserver.json; in stdenv.mkDerivation { diff --git a/pkgs/development/libraries/languagemachines/ucto.nix b/pkgs/development/libraries/languagemachines/ucto.nix index d8c8d99552c8..429858256068 100644 --- a/pkgs/development/libraries/languagemachines/ucto.nix +++ b/pkgs/development/libraries/languagemachines/ucto.nix @@ -5,7 +5,7 @@ }: let - release = builtins.fromJSON (builtins.readFile ./release-info/LanguageMachines-ucto.json); + release = lib.importJSON ./release-info/LanguageMachines-ucto.json; in stdenv.mkDerivation { diff --git a/pkgs/development/libraries/languagemachines/uctodata.nix b/pkgs/development/libraries/languagemachines/uctodata.nix index cad636227249..7f8d4889c62e 100644 --- a/pkgs/development/libraries/languagemachines/uctodata.nix +++ b/pkgs/development/libraries/languagemachines/uctodata.nix @@ -3,7 +3,7 @@ }: let - release = builtins.fromJSON (builtins.readFile ./release-info/LanguageMachines-uctodata.json); + release = lib.importJSON ./release-info/LanguageMachines-uctodata.json; in stdenv.mkDerivation { diff --git a/pkgs/development/libraries/libbacktrace/default.nix b/pkgs/development/libraries/libbacktrace/default.nix index 93927807af85..549ed0c29e86 100644 --- a/pkgs/development/libraries/libbacktrace/default.nix +++ b/pkgs/development/libraries/libbacktrace/default.nix @@ -19,7 +19,7 @@ in stdenv.mkDerivation rec { ]; meta = with lib; { description = "A C library that may be linked into a C/C++ program to produce symbolic backtraces"; - homepage = https://github.com/ianlancetaylor/libbacktrace; + homepage = "https://github.com/ianlancetaylor/libbacktrace"; maintainers = with maintainers; [ twey ]; license = with licenses; [ bsd3 ]; }; diff --git a/pkgs/development/libraries/libbsd/darwin.patch b/pkgs/development/libraries/libbsd/darwin.patch index 340eb47a6301..f491867ac5aa 100644 --- a/pkgs/development/libraries/libbsd/darwin.patch +++ b/pkgs/development/libraries/libbsd/darwin.patch @@ -1,26 +1,17 @@ -diff --git a/configure.ac b/configure.ac -index 6e9496d..60b6e4c 100644 ---- a/configure.ac -+++ b/configure.ac -@@ -44,6 +44,8 @@ AC_SUBST([TESTU01_LIBS]) - AM_CONDITIONAL([HAVE_LIBTESTU01], - [test "x$ac_cv_lib_testu01_unif01_CreateExternGenBits" = "xyes"]) - -+AX_CHECK_VSCRIPT -+ - is_windows=no - AS_CASE([$host_os], - [*-gnu*], [ -@@ -68,7 +70,7 @@ AS_CASE([$host_os], +diff --git c/configure.ac w/configure.ac +index 09cb310..30c0e2a 100644 +--- c/configure.ac ++++ w/configure.ac +@@ -110,7 +110,7 @@ AS_CASE([$host_os], AM_CONDITIONAL([OS_WINDOWS], [test "x$is_windows" = "xyes"]) # Checks for header files. --AC_CHECK_HEADERS([sys/ndir.h sys/dir.h ndir.h dirent.h grp.h]) -+AC_CHECK_HEADERS([sys/ndir.h sys/dir.h ndir.h dirent.h grp.h nlist.h]) +-AC_CHECK_HEADERS([sys/ndir.h sys/dir.h ndir.h dirent.h pwd.h grp.h]) ++AC_CHECK_HEADERS([sys/ndir.h sys/dir.h ndir.h dirent.h pwd.h grp.h nlist.h]) # Checks for typedefs, structures, and compiler characteristics. AC_C_INLINE -@@ -169,7 +171,8 @@ AC_LINK_IFELSE( +@@ -210,7 +210,8 @@ AC_LINK_IFELSE( AC_CHECK_FUNCS([clearenv dirfd fopencookie __fpurge \ getauxval getentropy getexecname getline \ @@ -29,11 +20,11 @@ index 6e9496d..60b6e4c 100644 + strlcpy strlcat strnstr strmode fpurge]) AM_CONDITIONAL([HAVE_GETENTROPY], [test "x$ac_cv_func_getentropy" = "xtrue"]) - AC_CONFIG_FILES([ -diff --git a/include/bsd/string.h b/include/bsd/string.h + AC_SUBST([LIBBSD_LIBS]) +diff --git c/include/bsd/string.h w/include/bsd/string.h index f987fee..a1e17ed 100644 ---- a/include/bsd/string.h -+++ b/include/bsd/string.h +--- c/include/bsd/string.h ++++ w/include/bsd/string.h @@ -41,10 +41,21 @@ #include <sys/types.h> @@ -56,175 +47,10 @@ index f987fee..a1e17ed 100644 #if !defined(__GLIBC__) || \ (defined(__GLIBC__) && (!__GLIBC_PREREQ(2, 25) || !defined(_GNU_SOURCE))) -diff --git a/m4/ax_check_vscript.m4 b/m4/ax_check_vscript.m4 -new file mode 100644 -index 0000000..9851f32 ---- /dev/null -+++ b/m4/ax_check_vscript.m4 -@@ -0,0 +1,142 @@ -+# =========================================================================== -+# https://www.gnu.org/software/autoconf-archive/ax_check_vscript.html -+# =========================================================================== -+# -+# SYNOPSIS -+# -+# AX_CHECK_VSCRIPT -+# -+# DESCRIPTION -+# -+# Check whether the linker supports version scripts. Version scripts are -+# used when building shared libraries to bind symbols to version nodes -+# (helping to detect incompatibilities) or to limit the visibility of -+# non-public symbols. -+# -+# Output: -+# -+# If version scripts are supported, VSCRIPT_LDFLAGS will contain the -+# appropriate flag to pass to the linker. On GNU systems this would -+# typically be "-Wl,--version-script", and on Solaris it would typically -+# be "-Wl,-M". -+# -+# Two Automake conditionals are also set: -+# -+# HAVE_VSCRIPT is true if the linker supports version scripts with -+# entries that use simple wildcards, like "local: *". -+# -+# HAVE_VSCRIPT_COMPLEX is true if the linker supports version scripts with -+# pattern matching wildcards, like "global: Java_*". -+# -+# On systems that do not support symbol versioning, such as Mac OS X, both -+# conditionals will be false. They will also be false if the user passes -+# "--disable-symvers" on the configure command line. -+# -+# Example: -+# -+# configure.ac: -+# -+# AX_CHECK_VSCRIPT -+# -+# Makefile.am: -+# -+# if HAVE_VSCRIPT -+# libfoo_la_LDFLAGS += $(VSCRIPT_LDFLAGS),@srcdir@/libfoo.map -+# endif -+# -+# if HAVE_VSCRIPT_COMPLEX -+# libbar_la_LDFLAGS += $(VSCRIPT_LDFLAGS),@srcdir@/libbar.map -+# endif -+# -+# LICENSE -+# -+# Copyright (c) 2014 Kevin Cernekee <cernekee@gmail.com> -+# -+# Copying and distribution of this file, with or without modification, are -+# permitted in any medium without royalty provided the copyright notice -+# and this notice are preserved. This file is offered as-is, without any -+# warranty. -+ -+#serial 2 -+ -+# _AX_CHECK_VSCRIPT(flag, global-sym, action-if-link-succeeds, [junk-file=no]) -+AC_DEFUN([_AX_CHECK_VSCRIPT], [ -+ AC_LANG_PUSH([C]) -+ ax_check_vscript_save_flags="$LDFLAGS" -+ echo "V1 { global: $2; local: *; };" > conftest.map -+ AS_IF([test x$4 = xyes], [ -+ echo "{" >> conftest.map -+ ]) -+ LDFLAGS="$LDFLAGS -Wl,$1,conftest.map" -+ AC_LINK_IFELSE([AC_LANG_PROGRAM([[int show, hide;]], [])], [$3]) -+ LDFLAGS="$ax_check_vscript_save_flags" -+ rm -f conftest.map -+ AC_LANG_POP([C]) -+]) dnl _AX_CHECK_VSCRIPT -+ -+AC_DEFUN([AX_CHECK_VSCRIPT], [ -+ -+ AC_ARG_ENABLE([symvers], -+ AS_HELP_STRING([--disable-symvers], -+ [disable library symbol versioning [default=auto]]), -+ [want_symvers=$enableval], -+ [want_symvers=yes] -+ ) -+ -+ AS_IF([test x$want_symvers = xyes], [ -+ -+ dnl First test --version-script and -M with a simple wildcard. -+ -+ AC_CACHE_CHECK([linker version script flag], ax_cv_check_vscript_flag, [ -+ ax_cv_check_vscript_flag=unsupported -+ _AX_CHECK_VSCRIPT([--version-script], [show], [ -+ ax_cv_check_vscript_flag=--version-script -+ ]) -+ AS_IF([test x$ax_cv_check_vscript_flag = xunsupported], [ -+ _AX_CHECK_VSCRIPT([-M], [show], [ax_cv_check_vscript_flag=-M]) -+ ]) -+ -+ dnl The linker may interpret -M (no argument) as "produce a load map." -+ dnl If "-M conftest.map" doesn't fail when conftest.map contains -+ dnl obvious syntax errors, assume this is the case. -+ -+ AS_IF([test x$ax_cv_check_vscript_flag != xunsupported], [ -+ _AX_CHECK_VSCRIPT([$ax_cv_check_vscript_flag], [show], -+ [ax_cv_check_vscript_flag=unsupported], [yes]) -+ ]) -+ ]) -+ -+ dnl If the simple wildcard worked, retest with a complex wildcard. -+ -+ AS_IF([test x$ax_cv_check_vscript_flag != xunsupported], [ -+ ax_check_vscript_flag=$ax_cv_check_vscript_flag -+ AC_CACHE_CHECK([if version scripts can use complex wildcards], -+ ax_cv_check_vscript_complex_wildcards, [ -+ ax_cv_check_vscript_complex_wildcards=no -+ _AX_CHECK_VSCRIPT([$ax_cv_check_vscript_flag], [sh*], [ -+ ax_cv_check_vscript_complex_wildcards=yes]) -+ ]) -+ ax_check_vscript_complex_wildcards="$ax_cv_check_vscript_complex_wildcards" -+ ], [ -+ ax_check_vscript_flag= -+ ax_check_vscript_complex_wildcards=no -+ ]) -+ ], [ -+ AC_MSG_CHECKING([linker version script flag]) -+ AC_MSG_RESULT([disabled]) -+ -+ ax_check_vscript_flag= -+ ax_check_vscript_complex_wildcards=no -+ ]) -+ -+ AS_IF([test x$ax_check_vscript_flag != x], [ -+ VSCRIPT_LDFLAGS="-Wl,$ax_check_vscript_flag" -+ AC_SUBST([VSCRIPT_LDFLAGS]) -+ ]) -+ -+ AM_CONDITIONAL([HAVE_VSCRIPT], -+ [test x$ax_check_vscript_flag != x]) -+ AM_CONDITIONAL([HAVE_VSCRIPT_COMPLEX], -+ [test x$ax_check_vscript_complex_wildcards = xyes]) -+ -+]) dnl AX_CHECK_VSCRIPT -diff --git a/src/Makefile.am b/src/Makefile.am -index 8384b92..e2c8e15 100644 ---- a/src/Makefile.am -+++ b/src/Makefile.am -@@ -65,8 +65,11 @@ libbsd_la_LIBADD = \ - $(ARC4RANDOM_ATFORK_LIBS) \ - $(nil) - libbsd_la_LDFLAGS = \ -- -Wl,--version-script=$(srcdir)/libbsd.map \ - -version-number $(LIBBSD_ABI) -+if HAVE_VSCRIPT -+libbsd_la_LDFLAGS += $(VSCRIPT_LDFLAGS),@srcdir@/libbsd.map -+endif -+ - libbsd_la_SOURCES = \ - arc4random.c \ - arc4random.h \ -diff --git a/src/fpurge.c b/src/fpurge.c +diff --git c/src/fpurge.c w/src/fpurge.c index 462535a..a8941db 100644 ---- a/src/fpurge.c -+++ b/src/fpurge.c +--- c/src/fpurge.c ++++ w/src/fpurge.c @@ -26,9 +26,10 @@ #include <errno.h> @@ -274,10 +100,10 @@ index 462535a..a8941db 100644 #else #error "Function fpurge() needs to be ported." #endif -diff --git a/src/funopen.c b/src/funopen.c -index 1e05c7e..65ba5a8 100644 ---- a/src/funopen.c -+++ b/src/funopen.c +diff --git c/src/funopen.c w/src/funopen.c +index 1e6f43a..3a3af6a 100644 +--- c/src/funopen.c ++++ w/src/funopen.c @@ -143,6 +143,7 @@ funopen(const void *cookie, * they will not add the needed support to implement it. Just ignore this * interface there, as it has never been provided anyway. @@ -286,43 +112,10 @@ index 1e05c7e..65ba5a8 100644 #else #error "Function funopen() needs to be ported or disabled." #endif -diff --git a/src/hash/sha512.h b/src/hash/sha512.h -index 4f368a1..7632e25 100644 ---- a/src/hash/sha512.h -+++ b/src/hash/sha512.h -@@ -29,7 +29,11 @@ - #ifndef _SHA512_H_ - #define _SHA512_H_ - -+#ifdef __MACH__ -+#include <stdint.h> -+#else - #include <sys/types.h> -+#endif - - #define SHA512_DIGEST_LENGTH 64 - -diff --git a/src/hash/sha512c.c b/src/hash/sha512c.c -index b3c8d5e..602f54e 100644 ---- a/src/hash/sha512c.c -+++ b/src/hash/sha512c.c -@@ -25,7 +25,12 @@ - */ - - #include <sys/cdefs.h> -+ -+#ifdef __MACH__ -+#include <machine/endian.h> -+#else - #include <sys/endian.h> -+#endif - #include <sys/types.h> - - #include <string.h> -diff --git a/src/local-link.h b/src/local-link.h +diff --git c/src/local-link.h w/src/local-link.h index 0d4351a..fc520af 100644 ---- a/src/local-link.h -+++ b/src/local-link.h +--- c/src/local-link.h ++++ w/src/local-link.h @@ -27,6 +27,11 @@ #ifndef LIBBSD_LOCAL_LINK_H #define LIBBSD_LOCAL_LINK_H @@ -340,10 +133,10 @@ index 0d4351a..fc520af 100644 #endif +#endif -diff --git a/src/nlist.c b/src/nlist.c -index 228c220..46c2d77 100644 ---- a/src/nlist.c -+++ b/src/nlist.c +diff --git c/src/nlist.c w/src/nlist.c +index d22fa19..f41333f 100644 +--- c/src/nlist.c ++++ w/src/nlist.c @@ -41,6 +41,7 @@ #include <unistd.h> #include <nlist.h> @@ -351,16 +144,16 @@ index 228c220..46c2d77 100644 +#if !HAVE_NLIST_H #include "local-elf.h" - #define SIZE_T_MAX 0xffffffffU -@@ -280,3 +281,4 @@ nlist(const char *name, struct nlist *list) + #ifndef SIZE_T_MAX +@@ -282,3 +283,4 @@ nlist(const char *name, struct nlist *list) (void)close(fd); return (n); } +#endif -diff --git a/src/readpassphrase.c b/src/readpassphrase.c +diff --git c/src/readpassphrase.c w/src/readpassphrase.c index f9f6195..2bc5fb4 100644 ---- a/src/readpassphrase.c -+++ b/src/readpassphrase.c +--- c/src/readpassphrase.c ++++ w/src/readpassphrase.c @@ -36,6 +36,14 @@ #define TCSASOFT 0 #endif @@ -376,10 +169,10 @@ index f9f6195..2bc5fb4 100644 static volatile sig_atomic_t signo[_NSIG]; static void handler(int); -diff --git a/src/setproctitle.c b/src/setproctitle.c +diff --git c/src/setproctitle.c w/src/setproctitle.c index ff32aa3..51ed833 100644 ---- a/src/setproctitle.c -+++ b/src/setproctitle.c +--- c/src/setproctitle.c ++++ w/src/setproctitle.c @@ -33,6 +33,10 @@ #include <string.h> #include "local-link.h" @@ -401,10 +194,10 @@ index ff32aa3..51ed833 100644 extern __typeof__(setproctitle_impl) setproctitle_stub __attribute__((__alias__("setproctitle_impl"))); -diff --git a/src/strlcat.c b/src/strlcat.c +diff --git c/src/strlcat.c w/src/strlcat.c index 14c53a1..5961c17 100644 ---- a/src/strlcat.c -+++ b/src/strlcat.c +--- c/src/strlcat.c ++++ w/src/strlcat.c @@ -26,6 +26,7 @@ * Returns strlen(src) + MIN(dsize, strlen(initial dst)). * If retval >= dsize, truncation occurred. @@ -418,10 +211,10 @@ index 14c53a1..5961c17 100644 return(dlen + (src - osrc)); /* count does not include NUL */ } +#endif -diff --git a/src/strlcpy.c b/src/strlcpy.c +diff --git c/src/strlcpy.c w/src/strlcpy.c index e9a7fe4..5137acb 100644 ---- a/src/strlcpy.c -+++ b/src/strlcpy.c +--- c/src/strlcpy.c ++++ w/src/strlcpy.c @@ -24,6 +24,7 @@ * chars will be copied. Always NUL terminates (unless dsize == 0). * Returns strlen(src); if retval >= dsize, truncation occurred. @@ -435,10 +228,10 @@ index e9a7fe4..5137acb 100644 return(src - osrc - 1); /* count does not include NUL */ } +#endif -diff --git a/src/strmode.c b/src/strmode.c +diff --git c/src/strmode.c w/src/strmode.c index e6afde5..da680c9 100644 ---- a/src/strmode.c -+++ b/src/strmode.c +--- c/src/strmode.c ++++ w/src/strmode.c @@ -32,6 +32,7 @@ #include <sys/stat.h> #include <string.h> diff --git a/pkgs/development/libraries/libbsd/default.nix b/pkgs/development/libraries/libbsd/default.nix index 8754dd5f65d2..745b34226e2d 100644 --- a/pkgs/development/libraries/libbsd/default.nix +++ b/pkgs/development/libraries/libbsd/default.nix @@ -1,12 +1,12 @@ -{ lib, stdenv, fetchurl, autoreconfHook }: +{ lib, stdenv, fetchurl, autoreconfHook, libmd }: stdenv.mkDerivation rec { pname = "libbsd"; - version = "0.10.0"; + version = "0.11.3"; src = fetchurl { url = "https://libbsd.freedesktop.org/releases/${pname}-${version}.tar.xz"; - sha256 = "11x8q45jvjvf2dvgclds64mscyg10lva33qinf2hwgc84v3svf1l"; + sha256 = "18a2bcl9z0zyxhrm1lfv4yhhz0589s6jz0s78apaq78mhj0wz5gz"; }; outputs = [ "out" "dev" "man" ]; @@ -14,6 +14,7 @@ stdenv.mkDerivation rec { # darwin changes configure.ac which means we need to regenerate # the configure scripts nativeBuildInputs = [ autoreconfHook ]; + propagatedBuildInputs = [ libmd ]; patches = [ ./darwin.patch ]; diff --git a/pkgs/development/libraries/libdeltachat/darwin-dylib.patch b/pkgs/development/libraries/libdeltachat/darwin-dylib.patch new file mode 100644 index 000000000000..caa44a62a062 --- /dev/null +++ b/pkgs/development/libraries/libdeltachat/darwin-dylib.patch @@ -0,0 +1,53 @@ +diff --git a/CMakeLists.txt b/CMakeLists.txt +index 5ed8020c..44ca43e7 100644 +--- a/CMakeLists.txt ++++ b/CMakeLists.txt +@@ -2,12 +2,20 @@ cmake_minimum_required(VERSION 3.16) + project(deltachat LANGUAGES C) + include(GNUInstallDirs) + ++if(APPLE) ++ set(DYNAMIC_EXT "dylib") ++elseif(UNIX) ++ set(DYNAMIC_EXT "so") ++else() ++ set(DYNAMIC_EXT "dll") ++endif() ++ + find_program(CARGO cargo) + + add_custom_command( + OUTPUT + "target/release/libdeltachat.a" +- "target/release/libdeltachat.so" ++ "target/release/libdeltachat.${DYNAMIC_EXT}" + "target/release/pkgconfig/deltachat.pc" + COMMAND + PREFIX=${CMAKE_INSTALL_PREFIX} +@@ -32,11 +40,11 @@ add_custom_target( + ALL + DEPENDS + "target/release/libdeltachat.a" +- "target/release/libdeltachat.so" ++ "target/release/libdeltachat.${DYNAMIC_EXT}" + "target/release/pkgconfig/deltachat.pc" + ) + + install(FILES "deltachat-ffi/deltachat.h" DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}) + install(FILES "target/release/libdeltachat.a" DESTINATION ${CMAKE_INSTALL_LIBDIR}) +-install(FILES "target/release/libdeltachat.so" DESTINATION ${CMAKE_INSTALL_LIBDIR}) ++install(FILES "target/release/libdeltachat.${DYNAMIC_EXT}" DESTINATION ${CMAKE_INSTALL_LIBDIR}) + install(FILES "target/release/pkgconfig/deltachat.pc" DESTINATION ${CMAKE_INSTALL_LIBDIR}/pkgconfig) +diff --git a/python/install_python_bindings.py b/python/install_python_bindings.py +index c8ed43e2..714c7e30 100755 +--- a/python/install_python_bindings.py ++++ b/python/install_python_bindings.py +@@ -24,7 +24,7 @@ + + print("running:", " ".join(cmd)) + subprocess.check_call(cmd) +- subprocess.check_call("rm -rf build/ src/deltachat/*.so" , shell=True) ++ subprocess.check_call("rm -rf build/ src/deltachat/*.so src/deltachat/*.dylib" , shell=True) + + if len(sys.argv) <= 1 or sys.argv[1] != "onlybuild": + subprocess.check_call([ diff --git a/pkgs/development/libraries/libdeltachat/default.nix b/pkgs/development/libraries/libdeltachat/default.nix index 9cc0ca65ae0b..c401240f7d50 100644 --- a/pkgs/development/libraries/libdeltachat/default.nix +++ b/pkgs/development/libraries/libdeltachat/default.nix @@ -1,7 +1,6 @@ { lib , stdenv , fetchFromGitHub -, fetchpatch , cmake , openssl , perl @@ -16,33 +15,25 @@ stdenv.mkDerivation rec { pname = "libdeltachat"; - version = "1.60.0"; + version = "1.64.0"; src = fetchFromGitHub { owner = "deltachat"; repo = "deltachat-core-rust"; rev = version; - sha256 = "1agm5xyaib4ynmw4mhgmkhh4lnxs91wv0q9i1zfihv2vkckfm2s2"; + sha256 = "04a1ncikapx53jjrx0ac1qi907wlj6javylz4aksg4nfbph6y9j4"; }; patches = [ # https://github.com/deltachat/deltachat-core-rust/pull/2589 - (fetchpatch { - url = "https://github.com/deltachat/deltachat-core-rust/commit/408467e85d04fbbfd6bed5908d84d9e995943487.patch"; - sha256 = "1j2ywaazglgl6370js34acrg0wrh0b7krqg05dfjf65n527lzn59"; - }) + ./darwin-dylib.patch ./no-static-lib.patch - # https://github.com/deltachat/deltachat-core-rust/pull/2660 - (fetchpatch { - url = "https://github.com/deltachat/deltachat-core-rust/commit/8fb5e038a97d8ae68564c885d61b93127a68366d.patch"; - sha256 = "088pzfrrkgfi4646dc72404s3kykcpni7hgkppalwlzg0p4is41x"; - }) ]; cargoDeps = rustPlatform.fetchCargoTarball { inherit src; name = "${pname}-${version}"; - sha256 = "09d3mw2hb1gmqg7smaqwnfm7izw40znl0h1dz7s2imms2cnkjws1"; + sha256 = "0skrzxn99c1gqil7z0dv0xhg883k98v6mh96nycf7whl2d25965x"; }; nativeBuildInputs = [ diff --git a/pkgs/development/libraries/libdeltachat/no-static-lib.patch b/pkgs/development/libraries/libdeltachat/no-static-lib.patch index 95238cf88524..14ea1106138f 100644 --- a/pkgs/development/libraries/libdeltachat/no-static-lib.patch +++ b/pkgs/development/libraries/libdeltachat/no-static-lib.patch @@ -1,8 +1,8 @@ diff --git a/CMakeLists.txt b/CMakeLists.txt -index fe7abe08..acdbe0d6 100644 +index 44ca43e7..8b6960dd 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt -@@ -13,7 +13,6 @@ find_program(CARGO cargo) +@@ -14,7 +14,6 @@ find_program(CARGO cargo) add_custom_command( OUTPUT @@ -10,7 +10,7 @@ index fe7abe08..acdbe0d6 100644 "target/release/libdeltachat.${DYNAMIC_EXT}" "target/release/pkgconfig/deltachat.pc" COMMAND -@@ -38,13 +37,11 @@ add_custom_target( +@@ -39,12 +38,10 @@ add_custom_target( lib_deltachat ALL DEPENDS @@ -19,13 +19,12 @@ index fe7abe08..acdbe0d6 100644 "target/release/pkgconfig/deltachat.pc" ) - include(GNUInstallDirs) install(FILES "deltachat-ffi/deltachat.h" DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}) -install(FILES "target/release/libdeltachat.a" DESTINATION ${CMAKE_INSTALL_LIBDIR}) install(FILES "target/release/libdeltachat.${DYNAMIC_EXT}" DESTINATION ${CMAKE_INSTALL_LIBDIR}) install(FILES "target/release/pkgconfig/deltachat.pc" DESTINATION ${CMAKE_INSTALL_LIBDIR}/pkgconfig) diff --git a/deltachat-ffi/Cargo.toml b/deltachat-ffi/Cargo.toml -index a34a27ba..cf354abb 100644 +index de0fbafe..120efec9 100644 --- a/deltachat-ffi/Cargo.toml +++ b/deltachat-ffi/Cargo.toml @@ -12,7 +12,7 @@ categories = ["cryptography", "std", "email"] diff --git a/pkgs/development/libraries/libfyaml/default.nix b/pkgs/development/libraries/libfyaml/default.nix index 91ec5a5ed065..dc599a48f380 100644 --- a/pkgs/development/libraries/libfyaml/default.nix +++ b/pkgs/development/libraries/libfyaml/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "libfyaml"; - version = "0.7.1"; + version = "0.7.2"; src = fetchFromGitHub { owner = "pantoniou"; repo = pname; rev = "v${version}"; - sha256 = "1367cbny5msapy48z0yysbkawmk1qjqk7cjnqkjszs47riwvjz3h"; + sha256 = "0wq7ah9a83w0c5qppdpwqqjffwi85q7slz4im0kmkhxdp23v9m1i"; }; nativeBuildInputs = [ autoreconfHook pkg-config ]; diff --git a/pkgs/development/libraries/libieee1284/default.nix b/pkgs/development/libraries/libieee1284/default.nix index 7c20d1b4947c..a2cbd6e4096f 100644 --- a/pkgs/development/libraries/libieee1284/default.nix +++ b/pkgs/development/libraries/libieee1284/default.nix @@ -1,4 +1,6 @@ -{ lib, stdenv, fetchFromGitHub, autoconf, automake, libtool, xmlto, docbook_xml_dtd_412, docbook_xsl }: +{ lib, stdenv, fetchFromGitHub, fetchpatch +, autoconf, automake, libtool, xmlto, docbook_xml_dtd_412, docbook_xsl +}: stdenv.mkDerivation rec { pname = "libieee1284"; @@ -11,6 +13,14 @@ stdenv.mkDerivation rec { sha256 = "0wfv1prmhhpyll9l4g1ij3im7hk9mm96ydw3l9fvhjp3993cdn2x"; }; + patches = [ + # Fix build on Musl. + (fetchpatch { + url = "https://raw.githubusercontent.com/void-linux/void-packages/861ac185a6b60134292ff93d40e40b5391d0aa8e/srcpkgs/libieee1284/patches/musl.patch"; + sha256 = "03xivd6z7m51i5brlmzs60pjrlqyr4561qlnh182wa7rrm01x5y6"; + }) + ]; + nativeBuildInputs = [ autoconf automake @@ -24,7 +34,7 @@ stdenv.mkDerivation rec { "--without-python" ]; - preConfigure = '' + prePatch = '' ./bootstrap ''; diff --git a/pkgs/development/libraries/libkml/default.nix b/pkgs/development/libraries/libkml/default.nix deleted file mode 100644 index 0e2ab21ee792..000000000000 --- a/pkgs/development/libraries/libkml/default.nix +++ /dev/null @@ -1,56 +0,0 @@ -{ lib, stdenv -, fetchFromGitHub -, cmake -, boost -, expat -, zlib -, uriparser -, minizip -, gtest -}: - -stdenv.mkDerivation rec { - pname = "libkml"; - version = "1.3.0"; - - src = fetchFromGitHub { - owner = "libkml"; - repo = pname; - rev = version; - sha256 = "0gl4cqfps9mzx6hzf3dc10hy5y8smpyf1s31sqm7w343hgsllv0z"; - }; - - nativeBuildInputs = [ - cmake - ]; - - cmakeFlags = [ - "-DBUILD_TESTING=ON" - # Darwin tests require rpath for libs in build dir - ] ++ lib.optional stdenv.isDarwin [ - "-DCMAKE_SKIP_BUILD_RPATH=OFF" - ]; - - buildInputs = [ - gtest - boost - expat - zlib - uriparser - minizip - ]; - - preCheck = '' - export LD_LIBRARY_PATH=$PWD/lib - ''; - - doCheck = true; - - meta = with lib; { - description = "Reference implementation of OGC KML 2.2"; - homepage = "https://github.com/libkml/libkml"; - license = licenses.bsd3; - maintainers = with maintainers; [ costrouc ]; - platforms = platforms.all; - }; -} diff --git a/pkgs/development/libraries/libofx/default.nix b/pkgs/development/libraries/libofx/default.nix index 2cd480ee0103..97653d6f8e4e 100644 --- a/pkgs/development/libraries/libofx/default.nix +++ b/pkgs/development/libraries/libofx/default.nix @@ -3,13 +3,13 @@ stdenv.mkDerivation rec { pname = "libofx"; - version = "0.10.2"; + version = "0.10.3"; src = fetchFromGitHub { owner = "LibOFX"; repo = pname; rev = version; - sha256 = "sha256-V9FyOVH9CB6UtTxDvXRyX6mWaXq2Y2K3t9lotjigK0M="; + sha256 = "sha256-2ZSbXdlpX5MDV9y1d9ZqNSh/834MUeCZJHjJcg7ap0A="; }; preConfigure = "./autogen.sh"; diff --git a/pkgs/development/libraries/libopus/default.nix b/pkgs/development/libraries/libopus/default.nix index 7a3a77931c76..7c563e081d01 100644 --- a/pkgs/development/libraries/libopus/default.nix +++ b/pkgs/development/libraries/libopus/default.nix @@ -6,7 +6,7 @@ stdenv.mkDerivation rec { version = "1.3.1"; src = fetchurl { - url = "https://archive.mozilla.org/pub/opus/opus-${version}.tar.gz"; + url = "mirror://mozilla/opus/opus-${version}.tar.gz"; sha256 = "17gz8kxs4i7icsc1gj713gadiapyklynlwqlf0ai98dj4lg8xdb5"; }; diff --git a/pkgs/development/libraries/libopusenc/default.nix b/pkgs/development/libraries/libopusenc/default.nix index 3cb14a2ea99e..bd749616cc47 100644 --- a/pkgs/development/libraries/libopusenc/default.nix +++ b/pkgs/development/libraries/libopusenc/default.nix @@ -5,7 +5,7 @@ stdenv.mkDerivation rec { version = "0.2.1"; src = fetchurl { - url = "https://archive.mozilla.org/pub/opus/libopusenc-${version}.tar.gz"; + url = "mirror://mozilla/opus/libopusenc-${version}.tar.gz"; sha256 = "1ffb0vhlymlsq70pxsjj0ksz77yfm2x0a1x8q50kxmnkm1hxp642"; }; diff --git a/pkgs/development/libraries/libpg_query/default.nix b/pkgs/development/libraries/libpg_query/default.nix index 110a2167fd31..ba554065cfc7 100644 --- a/pkgs/development/libraries/libpg_query/default.nix +++ b/pkgs/development/libraries/libpg_query/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "libpg_query"; - version = "13-2.0.7"; + version = "13-2.1.0"; src = fetchFromGitHub { owner = "pganalyze"; repo = "libpg_query"; rev = version; - sha256 = "sha256-xplp7Z17NlYbXIbBdN7EWDN4numdZUBIIVg5EowFMPA="; + sha256 = "sha256-DpvPmBvpx5pWDlx6T3Kp82ALi6FjOO549Exd8tWXDIk="; }; nativeBuildInputs = [ which ]; diff --git a/pkgs/development/libraries/libplctag/default.nix b/pkgs/development/libraries/libplctag/default.nix index f16e6eba0d9a..e17f8d6e239b 100644 --- a/pkgs/development/libraries/libplctag/default.nix +++ b/pkgs/development/libraries/libplctag/default.nix @@ -6,13 +6,13 @@ stdenv.mkDerivation rec { pname = "libplctag"; - version = "2.4.0"; + version = "2.4.2"; src = fetchFromGitHub { owner = "libplctag"; repo = "libplctag"; rev = "v${version}"; - sha256 = "sha256-ClNLU1BPNemUOu+nMHujFYQSE+wnYuUPhHytjD8snb4="; + sha256 = "sha256-LyFCKWOjqSHWGBm2p52R/eYuPjtf5IfqqMtrLCNWIV8="; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/development/libraries/libqaccessibilityclient/default.nix b/pkgs/development/libraries/libqaccessibilityclient/default.nix new file mode 100644 index 000000000000..1977a62f5c09 --- /dev/null +++ b/pkgs/development/libraries/libqaccessibilityclient/default.nix @@ -0,0 +1,26 @@ +{ lib, stdenv, fetchurl, cmake, qtbase, extra-cmake-modules }: + +stdenv.mkDerivation rec { + pname = "libqaccessibilityclient"; + version = "0.4.1"; + + src = fetchurl { + url = "mirror://kde/stable/libqaccessibilityclient/libqaccessibilityclient-${version}.tar.xz"; + sha256 = "sha256-HHaLT0MU/K4qB8t958sq4FIrXwK0Fzrz7ti/sqTYNCk="; + }; + + nativeBuildInputs = [ cmake extra-cmake-modules ]; + buildInputs = [ qtbase ]; + + outputs = [ "out" "dev" ]; + + dontWrapQtApps = true; + + meta = with lib; { + description = "Accessibilty tools helper library, used e.g. by screen readers"; + homepage = "https://github.com/KDE/libqaccessibilityclient"; + maintainers = with maintainers; [ artturin ]; + license = with licenses; [ lgpl3Only /* or */ lgpl21Only ]; + platforms = platforms.linux; + }; +} diff --git a/pkgs/development/libraries/libqalculate/default.nix b/pkgs/development/libraries/libqalculate/default.nix index 75b3dab36cb6..c7253364fd0c 100644 --- a/pkgs/development/libraries/libqalculate/default.nix +++ b/pkgs/development/libraries/libqalculate/default.nix @@ -3,13 +3,13 @@ stdenv.mkDerivation rec { pname = "libqalculate"; - version = "3.20.1"; + version = "3.21.0"; src = fetchFromGitHub { owner = "qalculate"; repo = "libqalculate"; rev = "v${version}"; - sha256 = "sha256-8SYI8CoeTfZXX0CgLnfl0rHwUZbYM7OGYzFQ41jm5Qs="; + sha256 = "sha256-aKNoLkqpnC+jOvqs7S7SYBu+5VZ+hHHzBkwccg+kYMQ="; }; outputs = [ "out" "dev" "doc" ]; diff --git a/pkgs/development/libraries/libqtav/default.nix b/pkgs/development/libraries/libqtav/default.nix index e9a54dc478cd..090291a120f7 100644 --- a/pkgs/development/libraries/libqtav/default.nix +++ b/pkgs/development/libraries/libqtav/default.nix @@ -1,22 +1,42 @@ -{ mkDerivation, lib, fetchFromGitHub, extra-cmake-modules -, qtbase, qtmultimedia, qtquick1, qttools -, libGL, libX11 -, libass, openal, ffmpeg, libuchardet -, alsa-lib, libpulseaudio, libva +{ mkDerivation +, lib +, fetchFromGitHub +, extra-cmake-modules +, qtbase +, qtmultimedia +, qtquick1 +, qttools +, libGL +, libX11 +, libass +, openal +, ffmpeg +, libuchardet +, alsa-lib +, libpulseaudio +, libva }: with lib; mkDerivation rec { pname = "libqtav"; - version = "git-2020-09-10"; + version = "unstable-2020-09-10"; nativeBuildInputs = [ extra-cmake-modules qttools ]; buildInputs = [ - qtbase qtmultimedia qtquick1 - libGL libX11 - libass openal ffmpeg libuchardet - alsa-lib libpulseaudio libva + qtbase + qtmultimedia + qtquick1 + libGL + libX11 + libass + openal + ffmpeg + libuchardet + alsa-lib + libpulseaudio + libva ]; src = fetchFromGitHub { diff --git a/pkgs/development/libraries/libressl/default.nix b/pkgs/development/libraries/libressl/default.nix index c091a1b698d2..0d01eeb81f1a 100644 --- a/pkgs/development/libraries/libressl/default.nix +++ b/pkgs/development/libraries/libressl/default.nix @@ -49,8 +49,11 @@ let # Since 2.9.x the default location can't be configured from the build using # DEFAULT_CA_FILE anymore, instead we have to patch the default value. - postPatch = lib.optionalString (lib.versionAtLeast version "2.9.2") '' - substituteInPlace ./tls/tls_config.c --replace '"/etc/ssl/cert.pem"' '"${cacert}/etc/ssl/certs/ca-bundle.crt"' + postPatch = '' + patchShebangs tests/ + ${lib.optionalString (lib.versionAtLeast version "2.9.2") '' + substituteInPlace ./tls/tls_config.c --replace '"/etc/ssl/cert.pem"' '"${cacert}/etc/ssl/certs/ca-bundle.crt"' + ''} ''; doCheck = true; diff --git a/pkgs/development/libraries/libsbsms/common.nix b/pkgs/development/libraries/libsbsms/common.nix new file mode 100644 index 000000000000..f206f68de42a --- /dev/null +++ b/pkgs/development/libraries/libsbsms/common.nix @@ -0,0 +1,36 @@ +{ lib +, stdenv +, fetchurl +, substituteAll +, pname +, version +, url +, sha256 +, homepage +}: + +stdenv.mkDerivation rec { + inherit pname version; + + src = fetchurl { + inherit url sha256; + }; + + patches = [ + # Fix buidling on platforms other than x86 + (substituteAll { + src = ./configure.patch; + msse = lib.optionalString stdenv.isx86_64 "-msse"; + }) + ]; + + doCheck = true; + + meta = { + inherit homepage; + description = "Subband sinusoidal modeling library for time stretching and pitch scaling audio"; + maintainers = with lib.maintainers; [ yuu ]; + license = lib.licenses.gpl2; + platforms = lib.platforms.all; + }; +} diff --git a/pkgs/development/libraries/libsbsms/configure.patch b/pkgs/development/libraries/libsbsms/configure.patch new file mode 100644 index 000000000000..cfb9d2d08e6b --- /dev/null +++ b/pkgs/development/libraries/libsbsms/configure.patch @@ -0,0 +1,22 @@ +diff --git a/configure b/configure +index 3d40335..faa3ac6 100755 +--- a/configure ++++ b/configure +@@ -14722,7 +14722,7 @@ if ${ax_cv_cxx_flags__msse+:} false; then : + else + + ax_save_FLAGS=$CXXFLAGS +- CXXFLAGS="-msse" ++ CXXFLAGS="@msse@" + cat confdefs.h - <<_ACEOF >conftest.$ac_ext + /* end confdefs.h. */ + +@@ -14747,7 +14747,7 @@ eval ax_check_compiler_flags=$ax_cv_cxx_flags__msse + { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ax_check_compiler_flags" >&5 + $as_echo "$ax_check_compiler_flags" >&6; } + if test "x$ax_check_compiler_flags" = xyes; then +- SBSMS_CFLAGS="$SBSMS_CFLAGS -msse" ++ SBSMS_CFLAGS="$SBSMS_CFLAGS @msse@" + else + as_fn_error $? "Need a version of gcc with -msse" "$LINENO" 5 + fi diff --git a/pkgs/development/libraries/libsbsms/default.nix b/pkgs/development/libraries/libsbsms/default.nix new file mode 100644 index 000000000000..6c014ea6223c --- /dev/null +++ b/pkgs/development/libraries/libsbsms/default.nix @@ -0,0 +1,22 @@ +let + pname = "libsbsms"; +in +pkgs: rec { + libsbsms_2_0_2 = pkgs.callPackage ./common.nix rec { + inherit pname; + version = "2.0.2"; + url = "mirror://sourceforge/sbsms/${pname}-${version}.tar.gz"; + sha256 = "sha256-zqs9lwZkszcFe0a89VKD1Q0ynaY2v4PQ7nw24iNBru4="; + homepage = "https://sourceforge.net/projects/sbsms/files/sbsms"; + }; + + libsbsms_2_3_0 = pkgs.callPackage ./common.nix rec { + inherit pname; + version = "2.3.0"; + url = "https://github.com/claytonotey/${pname}/archive/refs/tags/${version}.tar.gz"; + sha256 = "sha256-T4jRUrwG/tvanV1lUX1AJUpzEMkFBgGpMSIwnUWv0sk="; + homepage = "https://github.com/claytonotey/libsbsms"; + }; + + libsbsms = libsbsms_2_0_2; +} diff --git a/pkgs/development/libraries/libsixel/default.nix b/pkgs/development/libraries/libsixel/default.nix index 549f4385fa56..d4fa2a4d6ffe 100644 --- a/pkgs/development/libraries/libsixel/default.nix +++ b/pkgs/development/libraries/libsixel/default.nix @@ -3,33 +3,24 @@ , fetchFromGitHub , meson , ninja -, libbsd , gdk-pixbuf , gd , libjpeg , pkg-config -, fetchpatch }: stdenv.mkDerivation rec { pname = "libsixel"; - version = "1.10.1"; + version = "1.10.3"; src = fetchFromGitHub { owner = "libsixel"; repo = "libsixel"; rev = "v${version}"; - sha256 = "sha256-ACypJTFjXSzBjo4hQzUiJOqnaRaZnYX+/NublN9sbBo="; + sha256 = "1nny4295ipy4ajcxmmh04c796hcds0y7z7rv3qd17mj70y8j0r2d"; }; - patches = [ - (fetchpatch { - url = "https://github.com/libsixel/libsixel/commit/4d3e53ee007f3b71f638875f9fabbba658b2ca8a.patch"; - sha256 = "sha256-iDfsTyUczjtzV3pt1ZErbhVO2rMm2ZYKWSBl+ru+5HA="; - }) - ]; - buildInputs = [ - libbsd gdk-pixbuf gd + gdk-pixbuf gd ]; nativeBuildInputs = [ diff --git a/pkgs/development/libraries/libsmartcols/default.nix b/pkgs/development/libraries/libsmartcols/default.nix index 3ef1f3148994..bcd1573e2038 100644 --- a/pkgs/development/libraries/libsmartcols/default.nix +++ b/pkgs/development/libraries/libsmartcols/default.nix @@ -23,7 +23,7 @@ stdenv.mkDerivation rec { meta = { description = "smart column output alignment library"; - homepage = https://github.com/karelzak/util-linux/tree/master/libsmartcols; + homepage = "https://github.com/karelzak/util-linux/tree/master/libsmartcols"; license = lib.licenses.gpl2Plus; platforms = lib.platforms.linux ++ lib.platforms.darwin; maintainers = with lib.maintainers; [ rb2k ]; diff --git a/pkgs/development/libraries/libstrophe/default.nix b/pkgs/development/libraries/libstrophe/default.nix index ccc6fedd9169..a98099cfaec2 100644 --- a/pkgs/development/libraries/libstrophe/default.nix +++ b/pkgs/development/libraries/libstrophe/default.nix @@ -10,13 +10,13 @@ stdenv.mkDerivation rec { pname = "libstrophe"; - version = "0.10.1"; + version = "0.11.0"; src = fetchFromGitHub { owner = "strophe"; repo = pname; rev = version; - sha256 = "11d341avsfr0z4lq15cy5dkmff6qpy91wkgzdpfdy31l27pa1g79"; + sha256 = "sha256-xAqBxCYNo2IntnHKXY6CSJ+Yiu01lxQ1Q3gb0ioypSs="; }; nativeBuildInputs = [ autoreconfHook pkg-config ]; diff --git a/pkgs/development/libraries/libtorrent-rasterbar/default.nix b/pkgs/development/libraries/libtorrent-rasterbar/default.nix index 90c14c6fdf95..c822d9dd12f6 100644 --- a/pkgs/development/libraries/libtorrent-rasterbar/default.nix +++ b/pkgs/development/libraries/libtorrent-rasterbar/default.nix @@ -3,7 +3,7 @@ }: let - version = "2.0.3"; + version = "2.0.4"; # Make sure we override python, so the correct version is chosen boostPython = boost.override { enablePython = true; inherit python; }; @@ -16,7 +16,7 @@ in stdenv.mkDerivation { owner = "arvidn"; repo = "libtorrent"; rev = "v${version}"; - sha256 = "0c5g2chylhkwwssfab9gw0b7bm3raj08yzgia7j4d044lp8gflnd"; + sha256 = "sha256-D+Euv71pquqyKGPvk76IwYKvVj+/oNtJfiLleiafthQ="; fetchSubmodules = true; }; diff --git a/pkgs/development/libraries/libutempter/default.nix b/pkgs/development/libraries/libutempter/default.nix index ff2044242b9f..6c0406bf4013 100644 --- a/pkgs/development/libraries/libutempter/default.nix +++ b/pkgs/development/libraries/libutempter/default.nix @@ -7,7 +7,7 @@ stdenv.mkDerivation rec { version = "1.1.6"; src = fetchurl { - url = "http://archive.ubuntu.com/ubuntu/pool/main/libu/libutempter/libutempter_${version}.orig.tar.bz2"; + url = "mirror://ubuntu/pool/main/libu/libutempter/libutempter_${version}.orig.tar.bz2"; sha256 = "15y3xbgznjxnfmix4xg3bwmqdvghdw7slbhazb0ybmyf65gmd65q"; }; diff --git a/pkgs/development/libraries/libvirt/default.nix b/pkgs/development/libraries/libvirt/default.nix index 8c1de7820b00..040ba8eb8507 100644 --- a/pkgs/development/libraries/libvirt/default.nix +++ b/pkgs/development/libraries/libvirt/default.nix @@ -70,14 +70,14 @@ let in stdenv.mkDerivation rec { pname = "libvirt"; - version = "7.8.0"; + version = "7.9.0"; src = if buildFromTarball then fetchurl { url = "https://libvirt.org/sources/${pname}-${version}.tar.xz"; - sha256 = "sha256-pyfNCke/ok+n3ih00j86n58Czra0m6FSiPbZoJixmSE="; + sha256 = "sha256-gpzytfV0J5xA8ERuEWiBXT82uJcQVgJjyiznAlb3Low="; } else fetchFromGitLab @@ -85,7 +85,7 @@ stdenv.mkDerivation rec { owner = pname; repo = pname; rev = "v${version}"; - sha256 = "sha256-/tSMJFgLPAiQXcZ2qZLM4XZqf96NtW3+zwKyrwGho2s="; + sha256 = "sha256-Ua6+EKLES3385fqhH2+qwnwE+X/nmWqIBxCXXE3SVhs="; fetchSubmodules = true; }; diff --git a/pkgs/development/libraries/libxsmm/default.nix b/pkgs/development/libraries/libxsmm/default.nix index b016a5e8751c..ebb402cc0dda 100644 --- a/pkgs/development/libraries/libxsmm/default.nix +++ b/pkgs/development/libraries/libxsmm/default.nix @@ -6,13 +6,13 @@ stdenv.mkDerivation rec { pname = "libxsmm"; - version = "1.16.2"; + version = "1.16.3"; src = fetchFromGitHub { owner = "hfp"; repo = "libxsmm"; rev = version; - sha256 = "sha256-gmv5XHBRztcF7+ZKskQMloytJ53k0eJg0HJmUhndq70="; + sha256 = "sha256-PpMiD/PeQ0pe5hqFG6VFHWpR8y3wnO2z1dJfHHeItlQ="; }; nativeBuildInputs = [ diff --git a/pkgs/development/libraries/luabind/default.nix b/pkgs/development/libraries/luabind/default.nix index d7aed656fdb9..67605dda51d9 100644 --- a/pkgs/development/libraries/luabind/default.nix +++ b/pkgs/development/libraries/luabind/default.nix @@ -1,11 +1,14 @@ -{lib, stdenv, fetchurl, boost-build, lua, boost}: +{ lib, stdenv, fetchFromGitHub, boost-build, lua, boost }: -stdenv.mkDerivation { - name = "luabind-0.9.1"; +stdenv.mkDerivation rec { + pname = "luabind"; + version = "0.9.1"; - src = fetchurl { - url = "https://github.com/luabind/luabind/archive/v0.9.1.tar.gz"; - sha256 = "0e5ead50a07668d29888f2fa6f53220f900c886e46a2c99c7e8656842f05ff2d"; + src = fetchFromGitHub { + owner = "luabind"; + repo = "luabind"; + rev = version; + sha256 = "sha256-sK1ca2Oj9yXdmxyXeDO3k8YZ1g+HxIXLhvdTWdPDdag="; }; patches = [ ./0.9.1_modern_boost_fix.patch ./0.9.1_boost_1.57_fix.patch ./0.9.1_discover_luajit.patch ]; diff --git a/pkgs/development/libraries/lucene++/default.nix b/pkgs/development/libraries/lucene++/default.nix index 79e28cc7bb4a..ef55541ed777 100644 --- a/pkgs/development/libraries/lucene++/default.nix +++ b/pkgs/development/libraries/lucene++/default.nix @@ -1,28 +1,36 @@ -{ lib, stdenv, fetchFromGitHub, cmake, boost, gtest }: +{ lib, stdenv, fetchFromGitHub, cmake, boost, gtest, zlib }: stdenv.mkDerivation rec { pname = "lucene++"; - version = "3.0.7"; + version = "3.0.8"; src = fetchFromGitHub { owner = "luceneplusplus"; repo = "LucenePlusPlus"; rev = "rel_${version}"; - sha256 = "06b37fly6l27zc6kbm93f6khfsv61w792j8xihfagpcm9cfz2zi1"; + sha256 = "12v7r62f7pqh5h210pb74sfx6h70lj4pgfpva8ya2d55fn0qxrr2"; }; - postPatch = '' - sed -i -e '/Subversion *REQUIRED/d' \ - -e '/include.*CMakeExternal/d' \ - CMakeLists.txt - ''; - - cmakeFlags = [ "-DGTEST_INCLUDE_DIR=${gtest}/include" ]; nativeBuildInputs = [ cmake ]; - buildInputs = [ boost gtest ]; + buildInputs = [ boost gtest zlib ]; doCheck = true; - checkTarget = "test"; + + postPatch = '' + substituteInPlace src/test/CMakeLists.txt \ + --replace "add_subdirectory(gtest)" "" + ''; + + checkPhase = '' + runHook preCheck + LD_LIBRARY_PATH=$PWD/src/contrib:$PWD/src/core \ + src/test/lucene++-tester + runHook postCheck + ''; + + postInstall = '' + mv $out/include/pkgconfig $out/lib/ + ''; meta = { description = "C++ port of the popular Java Lucene search engine"; diff --git a/pkgs/development/libraries/nco/default.nix b/pkgs/development/libraries/nco/default.nix index e551e439051d..b90d64c2ffcb 100644 --- a/pkgs/development/libraries/nco/default.nix +++ b/pkgs/development/libraries/nco/default.nix @@ -1,32 +1,35 @@ -{ lib, stdenv, fetchzip, netcdf, netcdfcxx4, gsl, udunits, antlr2, which, curl, flex, coreutils }: +{ lib, stdenv, fetchFromGitHub, netcdf, netcdfcxx4, gsl, udunits, antlr2, which, curl, flex, coreutils }: stdenv.mkDerivation rec { - version = "5.0.1"; pname = "nco"; + version = "5.0.3"; - nativeBuildInputs = [ flex which antlr2 ]; - buildInputs = [ netcdf netcdfcxx4 gsl udunits curl coreutils ]; - - src = fetchzip { - url = "https://github.com/nco/nco/archive/${version}.tar.gz"; - sha256 = "sha256-Mdnko+0ZuMoKgBp//+rCVsbFJx90Tmrnal7FAmwIKEQ="; + src = fetchFromGitHub { + owner = "nco"; + repo = "nco"; + rev = version; + sha256 = "sha256-KrFRBlD3z/sjKIvxmE0s/xCILQmESecilnlUGzDDICw="; }; - prePatch = '' + nativeBuildInputs = [ flex which antlr2 ]; + + buildInputs = [ netcdf netcdfcxx4 gsl udunits curl coreutils ]; + + postPatch = '' substituteInPlace src/nco/nco_fl_utl.c \ --replace "/bin/cp" "${coreutils}/bin/cp" substituteInPlace src/nco/nco_fl_utl.c \ --replace "/bin/mv" "${coreutils}/bin/mv" ''; - parallelBuild = true; + enableParallelBuilding = true; - meta = { + meta = with lib; { description = "NetCDF Operator toolkit"; longDescription = "The NCO (netCDF Operator) toolkit manipulates and analyzes data stored in netCDF-accessible formats, including DAP, HDF4, and HDF5"; homepage = "http://nco.sourceforge.net/"; - license = lib.licenses.bsd3; - maintainers = [ lib.maintainers.bzizou ]; - platforms = lib.platforms.linux; + license = licenses.bsd3; + maintainers = with maintainers; [ bzizou ]; + platforms = platforms.linux; }; } diff --git a/pkgs/development/libraries/netcdf-cxx4/default.nix b/pkgs/development/libraries/netcdf-cxx4/default.nix index 494f4bf71575..698a8152a445 100644 --- a/pkgs/development/libraries/netcdf-cxx4/default.nix +++ b/pkgs/development/libraries/netcdf-cxx4/default.nix @@ -1,11 +1,13 @@ -{ lib, stdenv, fetchzip, netcdf, hdf5, curl, cmake, ninja }: +{ lib, stdenv, fetchFromGitHub, netcdf, hdf5, curl, cmake, ninja }: stdenv.mkDerivation rec { pname = "netcdf-cxx4"; version = "4.3.1"; - src = fetchzip { - url = "https://github.com/Unidata/netcdf-cxx4/archive/v${version}.tar.gz"; - sha256 = "05kydd5z9iil5iv4fp7l11cicda5n5lsg5sdmsmc55xpspnsg7hr"; + src = fetchFromGitHub { + owner = "Unidata"; + repo = "netcdf-cxx4"; + rev = "v${version}"; + sha256 = "sha256-GZ6n7dW3l8Kqrk2Xp2mxRTUWWQj0XEd2LDTG9EtrfhY="; }; preConfigure = '' diff --git a/pkgs/development/libraries/netcdf-fortran/default.nix b/pkgs/development/libraries/netcdf-fortran/default.nix index 503226ddcbb3..fc13fbe85bfd 100644 --- a/pkgs/development/libraries/netcdf-fortran/default.nix +++ b/pkgs/development/libraries/netcdf-fortran/default.nix @@ -1,11 +1,13 @@ -{ lib, stdenv, fetchurl, netcdf, hdf5, curl, gfortran }: +{ lib, stdenv, fetchFromGitHub, netcdf, hdf5, curl, gfortran }: stdenv.mkDerivation rec { pname = "netcdf-fortran"; version = "4.4.5"; - src = fetchurl { - url = "https://github.com/Unidata/netcdf-fortran/archive/v${version}.tar.gz"; - sha256 = "00qwg4v250yg8kxp68srrnvfbfim241fnlm071p9ila2mihk8r01"; + src = fetchFromGitHub { + owner = "Unidata"; + repo = "netcdf-fortran"; + rev = "v${version}"; + sha256 = "sha256-nC93NcA4VJbrqaLwyhjP10j/t6rQSYcAzKBxclpZVe0="; }; nativeBuildInputs = [ gfortran ]; diff --git a/pkgs/development/libraries/ogre/1.10.x.nix b/pkgs/development/libraries/ogre/1.10.x.nix index 849db216b921..616792787818 100644 --- a/pkgs/development/libraries/ogre/1.10.x.nix +++ b/pkgs/development/libraries/ogre/1.10.x.nix @@ -16,6 +16,14 @@ stdenv.mkDerivation { sha256 = "1zwvlx5dz9nwjazhnrhzb0w8ilpa84r0hrxrmmy69pgr1p1yif5a"; }; + # fix for ARM. sys/sysctl.h has moved in later glibcs, and + # https://github.com/OGRECave/ogre-next/issues/132 suggests it isn't + # needed anyway. + postPatch = '' + substituteInPlace OgreMain/src/OgrePlatformInformation.cpp \ + --replace '#include <sys/sysctl.h>' "" + ''; + cmakeFlags = [ "-DOGRE_BUILD_SAMPLES=${toString withSamples}" ] ++ map (x: "-DOGRE_BUILD_PLUGIN_${x}=on") ([ "BSP" "OCTREE" "PCZ" "PFX" ] ++ lib.optional withNvidiaCg "CG") diff --git a/pkgs/development/libraries/ogre/1.9.x.nix b/pkgs/development/libraries/ogre/1.9.x.nix index 30d1dd185547..7548ed48e7ae 100644 --- a/pkgs/development/libraries/ogre/1.9.x.nix +++ b/pkgs/development/libraries/ogre/1.9.x.nix @@ -19,6 +19,14 @@ stdenv.mkDerivation rec { sha256 = "11lfgzqaps3728dswrq3cbwk7aicigyz08q4hfyy6ikc6m35r4wg"; }; + # fix for ARM. sys/sysctl.h has moved in later glibcs, and + # https://github.com/OGRECave/ogre-next/issues/132 suggests it isn't + # needed anyway. + postPatch = '' + substituteInPlace OgreMain/src/OgrePlatformInformation.cpp \ + --replace '#include <sys/sysctl.h>' "" + ''; + cmakeFlags = [ "-DOGRE_BUILD_SAMPLES=${toString withSamples}" ] ++ map (x: "-DOGRE_BUILD_PLUGIN_${x}=on") ([ "BSP" "OCTREE" "PCZ" "PFX" ] ++ lib.optional withNvidiaCg "CG") diff --git a/pkgs/development/libraries/ogre/default.nix b/pkgs/development/libraries/ogre/default.nix index d097dc623e76..e93dfdfb144e 100644 --- a/pkgs/development/libraries/ogre/default.nix +++ b/pkgs/development/libraries/ogre/default.nix @@ -1,40 +1,84 @@ -{ fetchurl, stdenv, lib -, cmake, libGLU, libGL -, freetype, freeimage, zziplib, xorgproto, libXrandr -, libXaw, freeglut, libXt, libpng, boost, ois -, libX11, libXmu, libSM, pkg-config -, libXxf86vm, libICE +{ fetchFromGitHub +, stdenv +, lib +, cmake +, libGLU +, libGL +, freetype +, freeimage +, zziplib +, xorgproto +, libXrandr +, libXaw +, freeglut +, libXt +, libpng +, boost +, ois +, libX11 +, libXmu +, libSM +, pkg-config +, libXxf86vm +, libICE , unzip , libXrender , SDL2 -, withNvidiaCg ? false, nvidia_cg_toolkit -, withSamples ? false }: +, withNvidiaCg ? false +, nvidia_cg_toolkit +, withSamples ? false +}: stdenv.mkDerivation rec { pname = "ogre"; version = "1.12.1"; - src = fetchurl { - url = "https://github.com/OGRECave/ogre/archive/v${version}.zip"; - sha256 = "1iv6k0dwdzg5nnzw2mcgcl663q4f7p2kj7nhs8afnsikrzxxgsi4"; + src = fetchFromGitHub { + owner = "OGRECave"; + repo = "ogre"; + rev = "v${version}"; + sha256 = "sha256-FHW0+DZhw6MLlhjh4DRYhA+6vBBXMN9K6GEVoR6P5kM="; }; + # fix for ARM. sys/sysctl.h has moved in later glibcs, and + # https://github.com/OGRECave/ogre-next/issues/132 suggests it isn't + # needed anyway. + postPatch = '' + substituteInPlace OgreMain/src/OgrePlatformInformation.cpp \ + --replace '#include <sys/sysctl.h>' "" + ''; + cmakeFlags = [ "-DOGRE_BUILD_DEPENDENCIES=OFF" "-DOGRE_BUILD_SAMPLES=${toString withSamples}" ] ++ map (x: "-DOGRE_BUILD_PLUGIN_${x}=on") - ([ "BSP" "OCTREE" "PCZ" "PFX" ] ++ lib.optional withNvidiaCg "CG") + ([ "BSP" "OCTREE" "PCZ" "PFX" ] ++ lib.optional withNvidiaCg "CG") ++ map (x: "-DOGRE_BUILD_RENDERSYSTEM_${x}=on") [ "GL" ]; nativeBuildInputs = [ cmake unzip pkg-config ]; buildInputs = - [ cmake libGLU libGL - freetype freeimage zziplib xorgproto libXrandr - libXaw freeglut libXt libpng boost ois - libX11 libXmu libSM - libXxf86vm libICE - libXrender - SDL2 - ] ++ lib.optional withNvidiaCg nvidia_cg_toolkit; + [ + cmake + libGLU + libGL + freetype + freeimage + zziplib + xorgproto + libXrandr + libXaw + freeglut + libXt + libpng + boost + ois + libX11 + libXmu + libSM + libXxf86vm + libICE + libXrender + SDL2 + ] ++ lib.optional withNvidiaCg nvidia_cg_toolkit; meta = { description = "A 3D engine"; diff --git a/pkgs/development/libraries/ogrepaged/default.nix b/pkgs/development/libraries/ogrepaged/default.nix index 0aefedb52575..8209d32f759a 100644 --- a/pkgs/development/libraries/ogrepaged/default.nix +++ b/pkgs/development/libraries/ogrepaged/default.nix @@ -1,12 +1,14 @@ -{ lib, stdenv, fetchurl, fetchpatch, cmake, pkg-config, ois, ogre, libX11, boost }: +{ lib, stdenv, fetchFromGitHub, fetchpatch, cmake, pkg-config, ois, ogre, libX11, boost }: stdenv.mkDerivation rec { pname = "ogre-paged"; version = "1.2.0"; - src = fetchurl { - url = "https://github.com/RigsOfRods/ogre-pagedgeometry/archive/v${version}.tar.gz"; - sha256 = "17j7rw9wbkynxbhm2lay3qgjnnagb2vd5jn9iijnn2lf8qzbgy82"; + src = fetchFromGitHub { + owner = "RigsOfRods"; + repo = "ogre-pagedgeometry"; + rev = "v${version}"; + sha256 = "sha256-EwtTV8cbhDv0Bgj7i3qgq4hLETwd5B2GFEegwozlY9U="; }; patches = [ diff --git a/pkgs/development/libraries/openbabel/default.nix b/pkgs/development/libraries/openbabel/default.nix index 63784d94d8f0..a23382d3f892 100644 --- a/pkgs/development/libraries/openbabel/default.nix +++ b/pkgs/development/libraries/openbabel/default.nix @@ -1,15 +1,16 @@ -{stdenv, lib, fetchurl, cmake, zlib, libxml2, eigen, python, cairo, pcre, pkg-config, swig, rapidjson }: +{ stdenv, lib, fetchFromGitHub, cmake, zlib, libxml2, eigen, python, cairo, pcre, pkg-config, swig, rapidjson }: stdenv.mkDerivation rec { pname = "openbabel"; version = "3.1.1"; - src = fetchurl { - url = "https://github.com/openbabel/openbabel/archive/openbabel-${lib.replaceStrings ["."] ["-"] version}.tar.gz"; - sha256 = "c97023ac6300d26176c97d4ef39957f06e68848d64f1a04b0b284ccff2744f02"; + src = fetchFromGitHub { + owner = "openbabel"; + repo = "openbabel"; + rev = "openbabel-${lib.replaceStrings ["."] ["-"] version}"; + sha256 = "sha256-wQpgdfCyBAoh4pmj9j7wPTlMtraJ62w/EShxi/olVMY="; }; - buildInputs = [ zlib libxml2 eigen python cairo pcre swig rapidjson ]; nativeBuildInputs = [ cmake pkg-config ]; @@ -21,7 +22,6 @@ stdenv.mkDerivation rec { "-DPYTHON_BINDINGS=ON" ]; - postFixup = '' cat <<EOF > $out/lib/python$pythonMajorMinor/site-packages/setup.py from distutils.core import setup @@ -33,7 +33,7 @@ stdenv.mkDerivation rec { package_data = {'openbabel' : ['_openbabel.so']} ) EOF - ''; + ''; meta = with lib; { description = "A toolbox designed to speak the many languages of chemical data"; diff --git a/pkgs/development/libraries/opencv/3.x.nix b/pkgs/development/libraries/opencv/3.x.nix index dfb67b6a12a7..00c595d1d2da 100644 --- a/pkgs/development/libraries/opencv/3.x.nix +++ b/pkgs/development/libraries/opencv/3.x.nix @@ -213,11 +213,11 @@ stdenv.mkDerivation { # tesseract & leptonica. ++ lib.optionals enableTesseract [ tesseract leptonica ] ++ lib.optional enableTbb tbb - ++ lib.optional enableCuda cudatoolkit ++ lib.optionals stdenv.isDarwin [ bzip2 AVFoundation Cocoa VideoDecodeAcceleration ] ++ lib.optionals enableDocs [ doxygen graphviz-nox ]; - propagatedBuildInputs = lib.optional enablePython pythonPackages.numpy; + propagatedBuildInputs = lib.optional enablePython pythonPackages.numpy + ++ lib.optional enableCuda cudatoolkit; nativeBuildInputs = [ cmake pkg-config unzip ]; diff --git a/pkgs/development/libraries/opencv/4.x.nix b/pkgs/development/libraries/opencv/4.x.nix index 548b0df096bc..10459d959b29 100644 --- a/pkgs/development/libraries/opencv/4.x.nix +++ b/pkgs/development/libraries/opencv/4.x.nix @@ -269,11 +269,11 @@ stdenv.mkDerivation { # tesseract & leptonica. ++ lib.optionals enableTesseract [ tesseract leptonica ] ++ lib.optional enableTbb tbb - ++ lib.optionals enableCuda [ cudatoolkit nvidia-optical-flow-sdk ] ++ lib.optionals stdenv.isDarwin [ bzip2 AVFoundation Cocoa VideoDecodeAcceleration CoreMedia MediaToolbox ] ++ lib.optionals enableDocs [ doxygen graphviz-nox ]; - propagatedBuildInputs = lib.optional enablePython pythonPackages.numpy; + propagatedBuildInputs = lib.optional enablePython pythonPackages.numpy + ++ lib.optionals enableCuda [ cudatoolkit nvidia-optical-flow-sdk ]; nativeBuildInputs = [ cmake pkg-config unzip ]; diff --git a/pkgs/development/libraries/openscenegraph/default.nix b/pkgs/development/libraries/openscenegraph/default.nix index 6b446882ba13..6ed7d846de20 100644 --- a/pkgs/development/libraries/openscenegraph/default.nix +++ b/pkgs/development/libraries/openscenegraph/default.nix @@ -2,6 +2,7 @@ libX11, libXinerama, libXrandr, libGLU, libGL, glib, ilmbase, libxml2, pcre, zlib, AGL, Carbon, Cocoa, Foundation, + boost, jpegSupport ? true, libjpeg, exrSupport ? false, openexr, gifSupport ? true, giflib, @@ -9,7 +10,7 @@ tiffSupport ? true, libtiff, gdalSupport ? false, gdal, curlSupport ? true, curl, - colladaSupport ? false, opencollada, + colladaSupport ? false, collada-dom, opencascadeSupport ? false, opencascade, ffmpegSupport ? false, ffmpeg, nvttSupport ? false, nvidia-texture-tools, @@ -20,7 +21,7 @@ lasSupport ? false, libLAS, luaSupport ? false, lua, sdlSupport ? false, SDL2, - restSupport ? false, asio, boost, + restSupport ? false, asio, withApps ? false, withExamples ? false, fltk, wxGTK, }: @@ -48,7 +49,7 @@ stdenv.mkDerivation rec { ++ lib.optional tiffSupport libtiff ++ lib.optional gdalSupport gdal ++ lib.optional curlSupport curl - ++ lib.optional colladaSupport opencollada + ++ lib.optional colladaSupport collada-dom ++ lib.optional opencascadeSupport opencascade ++ lib.optional ffmpegSupport ffmpeg ++ lib.optional nvttSupport nvidia-texture-tools @@ -59,9 +60,10 @@ stdenv.mkDerivation rec { ++ lib.optional lasSupport libLAS ++ lib.optional luaSupport lua ++ lib.optional sdlSupport SDL2 - ++ lib.optionals restSupport [ asio boost ] + ++ lib.optional restSupport asio ++ lib.optionals withExamples [ fltk wxGTK ] ++ lib.optionals stdenv.isDarwin [ AGL Carbon Cocoa Foundation ] + ++ lib.optional (restSupport || colladaSupport) boost ; cmakeFlags = lib.optional (!withApps) "-DBUILD_OSG_APPLICATIONS=OFF" ++ lib.optional withExamples "-DBUILD_OSG_EXAMPLES=ON"; diff --git a/pkgs/development/libraries/openssl/3.0/nix-ssl-cert-file.patch b/pkgs/development/libraries/openssl/3.0/nix-ssl-cert-file.patch new file mode 100644 index 000000000000..e7090f49db6a --- /dev/null +++ b/pkgs/development/libraries/openssl/3.0/nix-ssl-cert-file.patch @@ -0,0 +1,15 @@ +diff --git a/crypto/x509/by_file.c b/crypto/x509/by_file.c +index 37d73ca84c..e328896234 100644 +--- a/crypto/x509/by_file.c ++++ b/crypto/x509/by_file.c +@@ -54,7 +54,9 @@ static int by_file_ctrl_ex(X509_LOOKUP *ctx, int cmd, const char *argp, + switch (cmd) { + case X509_L_FILE_LOAD: + if (argl == X509_FILETYPE_DEFAULT) { +- file = ossl_safe_getenv(X509_get_default_cert_file_env()); ++ file = ossl_safe_getenv("NIX_SSL_CERT_FILE"); ++ if (!file) ++ file = ossl_safe_getenv(X509_get_default_cert_file_env()); + if (file) + ok = (X509_load_cert_crl_file_ex(ctx, file, X509_FILETYPE_PEM, + libctx, propq) != 0); diff --git a/pkgs/development/libraries/openssl/3.0/openssl-disable-kernel-detection.patch b/pkgs/development/libraries/openssl/3.0/openssl-disable-kernel-detection.patch new file mode 100644 index 000000000000..baf162e88d09 --- /dev/null +++ b/pkgs/development/libraries/openssl/3.0/openssl-disable-kernel-detection.patch @@ -0,0 +1,22 @@ +diff --git a/Configure b/Configure +index f0ad787bc4..a48d2008c6 100755 +--- a/Configure ++++ b/Configure +@@ -1688,17 +1688,6 @@ unless ($disabled{devcryptoeng}) { + unless ($disabled{ktls}) { + $config{ktls}=""; + if ($target =~ m/^linux/) { +- my $usr = "/usr/$config{cross_compile_prefix}"; +- chop($usr); +- if ($config{cross_compile_prefix} eq "") { +- $usr = "/usr"; +- } +- my $minver = (4 << 16) + (13 << 8) + 0; +- my @verstr = split(" ",`cat $usr/include/linux/version.h | grep LINUX_VERSION_CODE`); +- +- if ($verstr[2] < $minver) { +- disable('too-old-kernel', 'ktls'); +- } + } elsif ($target =~ m/^BSD/) { + my $cc = $config{CROSS_COMPILE}.$config{CC}; + system("printf '#include <sys/types.h>\n#include <sys/ktls.h>' | $cc -E - >/dev/null 2>&1"); diff --git a/pkgs/development/libraries/openssl/default.nix b/pkgs/development/libraries/openssl/default.nix index ca44788a289e..ca2e240dd869 100644 --- a/pkgs/development/libraries/openssl/default.nix +++ b/pkgs/development/libraries/openssl/default.nix @@ -198,11 +198,33 @@ in { ./1.1/nix-ssl-cert-file.patch (if stdenv.hostPlatform.isDarwin - then ./1.1/use-etc-ssl-certs-darwin.patch - else ./1.1/use-etc-ssl-certs.patch) + then ./use-etc-ssl-certs-darwin.patch + else ./use-etc-ssl-certs.patch) ] ++ lib.optionals (stdenv.isDarwin) [ ./1.1/macos-yosemite-compat.patch ]; withDocs = true; }; + + openssl_3_0 = common { + version = "3.0.0"; + sha256 = "sha256-We7fy0bCUhTJvTftYHgpe03wHQEiZ/6enu4x9hvHBTY="; + patches = [ + ./3.0/nix-ssl-cert-file.patch + + # openssl will only compile in KTLS if the current kernel supports it. + # This patch disables build-time detection. + ./3.0/openssl-disable-kernel-detection.patch + + (if stdenv.hostPlatform.isDarwin + then ./use-etc-ssl-certs-darwin.patch + else ./use-etc-ssl-certs.patch) + ]; + + withDocs = true; + + extraMeta = with lib; { + license = licenses.asl20; + }; + }; } diff --git a/pkgs/development/libraries/openssl/1.1/use-etc-ssl-certs-darwin.patch b/pkgs/development/libraries/openssl/use-etc-ssl-certs-darwin.patch similarity index 100% rename from pkgs/development/libraries/openssl/1.1/use-etc-ssl-certs-darwin.patch rename to pkgs/development/libraries/openssl/use-etc-ssl-certs-darwin.patch diff --git a/pkgs/development/libraries/openssl/1.1/use-etc-ssl-certs.patch b/pkgs/development/libraries/openssl/use-etc-ssl-certs.patch similarity index 100% rename from pkgs/development/libraries/openssl/1.1/use-etc-ssl-certs.patch rename to pkgs/development/libraries/openssl/use-etc-ssl-certs.patch diff --git a/pkgs/development/libraries/openxr-loader/default.nix b/pkgs/development/libraries/openxr-loader/default.nix index b4a2634867bc..f55f9e83aec4 100644 --- a/pkgs/development/libraries/openxr-loader/default.nix +++ b/pkgs/development/libraries/openxr-loader/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "openxr-loader"; - version = "1.0.19"; + version = "1.0.20"; src = fetchFromGitHub { owner = "KhronosGroup"; repo = "OpenXR-SDK-Source"; rev = "release-${version}"; - sha256 = "sha256-LEXxqzHzTadgK2PV9Wiud9MzblDHdF4L5T4fVydRJW8="; + sha256 = "sha256-afyAHTyW9x2KxR1q/K3t5Dpv9OzATcYiSgiDn2S924E="; }; nativeBuildInputs = [ cmake python3 ]; diff --git a/pkgs/development/libraries/pcre/default.nix b/pkgs/development/libraries/pcre/default.nix index c91d4e2bd0c2..d2fe9a84ac37 100644 --- a/pkgs/development/libraries/pcre/default.nix +++ b/pkgs/development/libraries/pcre/default.nix @@ -17,7 +17,7 @@ in stdenv.mkDerivation { name = "${pname}-${version}"; src = fetchurl { - url = "https://ftp.pcre.org/pub/pcre/pcre-${version}.tar.bz2"; + url = "mirror://sourceforge/project/pcre/pcre/${version}/pcre-${version}.tar.bz2"; sha256 = "0v9nk51wh55pcbnf2jr36yarz8ayajn6d7ywiq2wagivn9c8c40r"; }; diff --git a/pkgs/development/libraries/pcre2/default.nix b/pkgs/development/libraries/pcre2/default.nix index dbf8f6b750f8..724a1b1247a2 100644 --- a/pkgs/development/libraries/pcre2/default.nix +++ b/pkgs/development/libraries/pcre2/default.nix @@ -7,7 +7,7 @@ stdenv.mkDerivation rec { pname = "pcre2"; version = "10.37"; src = fetchurl { - url = "https://ftp.pcre.org/pub/pcre/${pname}-${version}.tar.bz2"; + url = "https://github.com/PhilipHazel/pcre2/releases/download/pcre2-${version}/pcre2-${version}.tar.bz2"; hash = "sha256-TZWpbouAUpiTtFYr4SZI15i5V7G6Gq45YGu8KrlW0nA="; }; diff --git a/pkgs/development/libraries/physics/fastnlo_toolkit/default.nix b/pkgs/development/libraries/physics/fastnlo_toolkit/default.nix index fae2ff5a0f22..d9e88c4293ac 100644 --- a/pkgs/development/libraries/physics/fastnlo_toolkit/default.nix +++ b/pkgs/development/libraries/physics/fastnlo_toolkit/default.nix @@ -1,7 +1,6 @@ { lib , stdenv -, fetchFromGitLab -, autoreconfHook +, fetchurl , boost , gfortran , lhapdf @@ -14,28 +13,14 @@ , withPython ? false }: -let - tag = "2823"; -in - stdenv.mkDerivation rec { pname = "fastnlo_toolkit"; - version = "2.5.0pre-${tag}"; + version = "2.5.0-2826"; - src = fetchFromGitLab { - domain = "gitlab.etp.kit.edu"; - owner = "qcd-public"; - repo = "fastNLO"; - rev = tag; - hash = "sha256-FEKnEnK90tT4BJJ6MLva9lCl3aYzO1YGdx/8Ol2vM7M="; - } + /v2.5/toolkit; - - postPatch = '' - # remove duplicate macro, to fix for autoconf 2.70 - sed -e '0,/AC_CONFIG_MACRO_DIR\([m4]\)/{/AC_CONFIG_MACRO_DIR/d}' -i configure.ac - ''; - - nativeBuildInputs = [ autoreconfHook ]; + src = fetchurl { + url = "https://fastnlo.hepforge.org/code/v25/fastnlo_toolkit-${version}.tar.gz"; + sha256 = "sha256-7aIMYCOkHC/17CHYiEfrxvtSJxTDivrS7BQ32cGiEy0="; + }; buildInputs = [ boost @@ -53,6 +38,10 @@ stdenv.mkDerivation rec { preConfigure = '' substituteInPlace ./fastnlotoolkit/Makefile.in \ --replace "-fext-numeric-literals" "" + + # disable test that fails due to strict floating-point number comparison + echo "#!/usr/bin/env perl" > check/fnlo-tk-stattest.pl.in + chmod +x check/fnlo-tk-stattest.pl.in ''; configureFlags = [ @@ -88,6 +77,5 @@ stdenv.mkDerivation rec { license = licenses.gpl3Plus; maintainers = with maintainers; [ veprbl ]; platforms = platforms.unix; - broken = stdenv.isAarch64; # failing test "fnlo-tk-stattest.pl" }; } diff --git a/pkgs/development/libraries/physics/lhapdf/default.nix b/pkgs/development/libraries/physics/lhapdf/default.nix index db185e299197..a3753d86356e 100644 --- a/pkgs/development/libraries/physics/lhapdf/default.nix +++ b/pkgs/development/libraries/physics/lhapdf/default.nix @@ -9,6 +9,12 @@ stdenv.mkDerivation rec { sha256 = "sha256-fS8CZ+LWWw3e4EhVOzQtfIk6bbq+HjJsrWLeABDdgQw="; }; + # The Apple SDK only exports locale_t from xlocale.h whereas glibc + # had decided that xlocale.h should be a part of locale.h + postPatch = lib.optionalString (stdenv.isDarwin && stdenv.cc.isGNU) '' + substituteInPlace src/GridPDF.cc --replace '#include <locale>' '#include <xlocale.h>' + ''; + nativeBuildInputs = [ makeWrapper ]; buildInputs = [ python ]; diff --git a/pkgs/development/libraries/physics/rivet/default.nix b/pkgs/development/libraries/physics/rivet/default.nix index 9d3124987048..b041dd483e1b 100644 --- a/pkgs/development/libraries/physics/rivet/default.nix +++ b/pkgs/development/libraries/physics/rivet/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "rivet"; - version = "3.1.4"; + version = "3.1.5"; src = fetchurl { url = "https://www.hepforge.org/archive/rivet/Rivet-${version}.tar.bz2"; - sha256 = "sha256-N+3ICilozhAxWJ5DumtJKHfKeQG+o4+Lt1NqXIz4EA0="; + hash = "sha256-YhcXW3gab7z3EJd3qGePeplVEapV4a5WKIc151hQXZo="; }; latex = texlive.combine { inherit (texlive) diff --git a/pkgs/development/libraries/physics/yoda/default.nix b/pkgs/development/libraries/physics/yoda/default.nix index 6fb9b9560aae..e23f7aaadd99 100644 --- a/pkgs/development/libraries/physics/yoda/default.nix +++ b/pkgs/development/libraries/physics/yoda/default.nix @@ -1,14 +1,23 @@ -{ lib, stdenv, fetchurl, python, root, makeWrapper, zlib, withRootSupport ? false }: +{ lib, stdenv, fetchurl, fetchpatch, python, root, makeWrapper, zlib, withRootSupport ? false }: stdenv.mkDerivation rec { pname = "yoda"; - version = "1.9.1"; + version = "1.9.2"; src = fetchurl { url = "https://www.hepforge.org/archive/yoda/YODA-${version}.tar.bz2"; - sha256 = "sha256-xhagWmVlvlsayL0oWTihoxhq0ejejEACCsdQqFN1HUw="; + hash = "sha256-zb7j7fBMv2brJ+gUMMDTKFEJDC2embENe3wXdx0VTOA="; }; + patches = [ + # Prevent ROOT from initializing X11 or Cocoa (helps with sandboxing) + (fetchpatch { + url = "https://gitlab.com/hepcedar/yoda/-/commit/36c035f4f0385dec58702f09564ca66a14ca2c3e.diff"; + sha256 = "sha256-afB+y33TVNJtxY5As18EcutJEGDE4g0UzMxzA+YgICk="; + excludes = [ "ChangeLog" ]; + }) + ]; + nativeBuildInputs = with python.pkgs; [ cython makeWrapper ]; buildInputs = [ python ] ++ (with python.pkgs; [ numpy matplotlib ]) @@ -32,18 +41,13 @@ stdenv.mkDerivation rec { doInstallCheck = true; installCheckTarget = "check"; - - # Workaround for https://gitlab.com/hepcedar/yoda/-/merge_requests/49 - preInstallCheck = '' - cp tests/test{1,}.yoda - gzip -c tests/test.yoda > tests/test.yoda.gz - ''; + enableParallelChecking = false; # testreader consumes output of testwriter meta = { description = "Provides small set of data analysis (specifically histogramming) classes"; - license = lib.licenses.gpl3; - homepage = "https://yoda.hepforge.org"; - platforms = lib.platforms.unix; + license = lib.licenses.gpl3; + homepage = "https://yoda.hepforge.org"; + platforms = lib.platforms.unix; maintainers = with lib.maintainers; [ veprbl ]; }; } diff --git a/pkgs/development/libraries/pipewire/default.nix b/pkgs/development/libraries/pipewire/default.nix index 1f7a791471dd..cf02589792f3 100644 --- a/pkgs/development/libraries/pipewire/default.nix +++ b/pkgs/development/libraries/pipewire/default.nix @@ -1,7 +1,6 @@ { stdenv , lib , fetchFromGitLab -, fetchpatch , removeReferencesTo , python3 , meson @@ -63,7 +62,7 @@ let self = stdenv.mkDerivation rec { pname = "pipewire"; - version = "0.3.39"; + version = "0.3.40"; outputs = [ "out" @@ -81,7 +80,7 @@ let owner = "pipewire"; repo = "pipewire"; rev = version; - sha256 = "sha256-peTS1+NuQxZg1rrv8DrnJW5BR9yReleqooIwhZWHLjM="; + sha256 = "sha256-eY6uQa4+sC6yUWhF4IpAgRoppwhHO4s5fIMXOkS0z7A="; }; patches = [ @@ -97,12 +96,6 @@ let ./0090-pipewire-config-template-paths.patch # Place SPA data files in lib output to avoid dependency cycles ./0095-spa-data-dir.patch - # Fix compilation on some architectures - # XXX: REMOVE ON NEXT RELEASE - (fetchpatch { - url = "https://gitlab.freedesktop.org/pipewire/pipewire/-/commit/651f0decea5f83730c271e9bed03cdd0048fcd49.diff"; - sha256 = "1bmpi5qn750mcspaw7m57ww0503sl9781jswqby4gr0f7c5wmqvj"; - }) ]; nativeBuildInputs = [ @@ -188,7 +181,7 @@ let ''; passthru = { - updateScript = ./update.sh; + updateScript = ./update-pipewire.sh; tests = { installedTests = nixosTests.installed-tests.pipewire; diff --git a/pkgs/development/libraries/pipewire/media-session.nix b/pkgs/development/libraries/pipewire/media-session.nix index 37daffe5c88a..47cb3b415956 100644 --- a/pkgs/development/libraries/pipewire/media-session.nix +++ b/pkgs/development/libraries/pipewire/media-session.nix @@ -20,14 +20,14 @@ let self = stdenv.mkDerivation rec { pname = "pipewire-media-session"; - version = "0.4.0"; + version = "0.4.1"; src = fetchFromGitLab { domain = "gitlab.freedesktop.org"; owner = "pipewire"; repo = "media-session"; rev = version; - sha256 = "sha256-zhOvBlG7DuQkJ+ZZBhBhfKwk+bbLljpt3w4JlK3cJLk="; + sha256 = "sha256-e537gTkiNYMz2YJrOff/MXYWVDgHZDkqkSn8Qh+7Wr4="; }; nativeBuildInputs = [ @@ -67,6 +67,7 @@ let ''; passthru = { + updateScript = ./update-media-session.sh; tests = { test-paths = callPackage ./test-paths.nix { package = self; } { paths-out = [ diff --git a/pkgs/development/libraries/pipewire/update.sh b/pkgs/development/libraries/pipewire/update-media-session.sh similarity index 61% rename from pkgs/development/libraries/pipewire/update.sh rename to pkgs/development/libraries/pipewire/update-media-session.sh index 9fc466276672..c55745815759 100755 --- a/pkgs/development/libraries/pipewire/update.sh +++ b/pkgs/development/libraries/pipewire/update-media-session.sh @@ -10,19 +10,6 @@ IFS=$'\n' NIXPKGS_ROOT="$(git rev-parse --show-toplevel)" cd "$NIXPKGS_ROOT" -nix-update pipewire -outputs=$(nix-build . -A pipewire) -for p in $outputs; do - conf_files=$(find "$p/nix-support/" -name '*.conf.json') - for c in $conf_files; do - file_name=$(basename "$c") - if [[ ! -e "nixos/modules/services/desktops/pipewire/daemon/$file_name" ]]; then - echo "New file $file_name found! Add it to the module config and passthru tests!" - fi - install -m 0644 "$c" "nixos/modules/services/desktops/pipewire/daemon/" - done -done - nix-update pipewire-media-session outputs=$(nix-build . -A pipewire-media-session) for p in $outputs; do diff --git a/pkgs/development/libraries/pipewire/update-pipewire.sh b/pkgs/development/libraries/pipewire/update-pipewire.sh new file mode 100755 index 000000000000..d94d39c76307 --- /dev/null +++ b/pkgs/development/libraries/pipewire/update-pipewire.sh @@ -0,0 +1,25 @@ +#!/usr/bin/env nix-shell +#!nix-shell -p nix-update -i bash +# shellcheck shell=bash + +set -o errexit -o pipefail -o nounset -o errtrace +shopt -s inherit_errexit +shopt -s nullglob +IFS=$'\n' + +NIXPKGS_ROOT="$(git rev-parse --show-toplevel)" + +cd "$NIXPKGS_ROOT" +nix-update pipewire +outputs=$(nix-build . -A pipewire) +for p in $outputs; do + conf_files=$(find "$p/nix-support/" -name '*.conf.json') + for c in $conf_files; do + file_name=$(basename "$c") + if [[ ! -e "nixos/modules/services/desktops/pipewire/daemon/$file_name" ]]; then + echo "New file $file_name found! Add it to the module config and passthru tests!" + fi + install -m 0644 "$c" "nixos/modules/services/desktops/pipewire/daemon/" + done +done + diff --git a/pkgs/development/libraries/pixman/default.nix b/pkgs/development/libraries/pixman/default.nix index d8f2e3bd5599..be41526c4f23 100644 --- a/pkgs/development/libraries/pixman/default.nix +++ b/pkgs/development/libraries/pixman/default.nix @@ -9,7 +9,7 @@ stdenv.mkDerivation rec { sha256 = "0l0m48lnmdlmnaxn2021qi5cj366d9fzfjxkqgcj9bs14pxbgaw4"; }; - separateDebugInfo = true; + separateDebugInfo = !stdenv.hostPlatform.isStatic; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/development/libraries/plplot/default.nix b/pkgs/development/libraries/plplot/default.nix index 92d74cab93bc..dca1248b8b6b 100644 --- a/pkgs/development/libraries/plplot/default.nix +++ b/pkgs/development/libraries/plplot/default.nix @@ -15,7 +15,7 @@ in stdenv.mkDerivation rec { version = "5.15.0"; src = fetchurl { - url = "https://downloads.sourceforge.net/project/${pname}/${pname}/${version}%20Source/${pname}-${version}.tar.gz"; + url = "mirror://sourceforge/project/${pname}/${pname}/${version}%20Source/${pname}-${version}.tar.gz"; sha256 = "0ywccb6bs1389zjfmc9zwdvdsvlpm7vg957whh6b5a96yvcf8bdr"; }; diff --git a/pkgs/development/libraries/precice/default.nix b/pkgs/development/libraries/precice/default.nix index 68084eb52b3b..134eb6602142 100644 --- a/pkgs/development/libraries/precice/default.nix +++ b/pkgs/development/libraries/precice/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "precice"; - version = "2.2.1"; + version = "2.3.0"; src = fetchFromGitHub { owner = "precice"; repo = pname; rev = "v${version}"; - sha256 = "sha256-XEdrKhxG0dhsfJH6glrzc+JZeCgPEVIswj0ofP838lg="; + sha256 = "sha256:0p8d2xf4bl41b30yp38sqyp4fipwgcdhl0khxcv5g69fxvz2i2il"; }; cmakeFlags = [ diff --git a/pkgs/development/libraries/proj/default.nix b/pkgs/development/libraries/proj/default.nix index caa270bcf60f..134532308c88 100644 --- a/pkgs/development/libraries/proj/default.nix +++ b/pkgs/development/libraries/proj/default.nix @@ -1,6 +1,7 @@ { lib , stdenv , fetchFromGitHub +, fetchpatch , cmake , pkg-config , sqlite @@ -20,6 +21,14 @@ stdenv.mkDerivation rec { sha256 = "sha256-Z2nruyowC3NG4Wb8AFBL0PME/zp9D7SwQdMSl6VjH/w="; }; + patches = [ + (fetchpatch { + name = "Make-CApi-test-cross-platform.patch"; + url = "https://github.com/OSGeo/PROJ/commit/ac113a8898cded7f5359f1edd3abc17a78eee9b4.patch"; + sha256 = "0gz2xa5nxzck5c0yr7cspv3kw4cz3fxb2yic76w7qfvxidi7z1s1"; + }) + ]; + outputs = [ "out" "dev"]; nativeBuildInputs = [ cmake pkg-config ]; diff --git a/pkgs/development/libraries/py3c/default.nix b/pkgs/development/libraries/py3c/default.nix index e46d01d0627a..c3eb3bfd1a1d 100644 --- a/pkgs/development/libraries/py3c/default.nix +++ b/pkgs/development/libraries/py3c/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "py3c"; - version = "1.3.1"; + version = "1.4"; src = fetchFromGitHub { owner = "encukou"; repo = pname; rev = "v${version}"; - sha256 = "04i2z7hrig78clc59q3i1z2hh24g7z1bfvxznlzxv00d4s57nhpi"; + sha256 = "sha256-v8+0J56sZVbGdBlOotObUa10/zFMTvfXdMYRsKhyZaY="; }; postPatch = '' diff --git a/pkgs/development/libraries/qt-5/modules/qtwebengine.nix b/pkgs/development/libraries/qt-5/modules/qtwebengine.nix index 03247487749a..b49efa600fa5 100644 --- a/pkgs/development/libraries/qt-5/modules/qtwebengine.nix +++ b/pkgs/development/libraries/qt-5/modules/qtwebengine.nix @@ -239,5 +239,6 @@ qtModule { platforms = platforms.unix; # This build takes a long time; particularly on slow architectures timeout = 24 * 3600; + broken = stdenv.isDarwin && (lib.versionAtLeast qtCompatVersion "5.14"); # requires a newer SDK }; } diff --git a/pkgs/development/libraries/recastnavigation/default.nix b/pkgs/development/libraries/recastnavigation/default.nix new file mode 100644 index 000000000000..d39d1a713219 --- /dev/null +++ b/pkgs/development/libraries/recastnavigation/default.nix @@ -0,0 +1,27 @@ +{ stdenv, lib, fetchFromGitHub, cmake, libGL, SDL2, libGLU }: + +stdenv.mkDerivation rec { + pname = "recastai"; + # use latest revision for the CMake build process and OpenMW + # OpenMW use e75adf86f91eb3082220085e42dda62679f9a3ea + version = "unstable-2021-03-05"; + + src = fetchFromGitHub { + owner = "recastnavigation"; + repo = "recastnavigation"; + rev = "c5cbd53024c8a9d8d097a4371215e3342d2fdc87"; + sha256 = "sha256-QP3lMMFR6fiKQTksAkRL6X9yaoVz2xt4QSIP9g6piww="; + }; + + nativeBuildInputs = [ cmake ]; + + buildInputs = [ libGL SDL2 libGLU ]; + + meta = with lib; { + homepage = "https://github.com/recastnavigation/recastnavigation"; + description = "Navigation-mesh Toolset for Games"; + license = licenses.zlib; + maintainers = with maintainers; [ marius851000 ]; + platforms = platforms.all; + }; +} diff --git a/pkgs/development/libraries/science/math/cudnn/default.nix b/pkgs/development/libraries/science/math/cudnn/default.nix index d2a5a8c2a790..3d4d4c21e5a1 100644 --- a/pkgs/development/libraries/science/math/cudnn/default.nix +++ b/pkgs/development/libraries/science/math/cudnn/default.nix @@ -1,4 +1,6 @@ -{ callPackage, cudatoolkit_10_0, cudatoolkit_10_1, cudatoolkit_10_2, cudatoolkit_11_0, cudatoolkit_11_1, cudatoolkit_11_2 }: +{ callPackage, cudatoolkit_10_0, cudatoolkit_10_1, cudatoolkit_10_2, cudatoolkit_11_0, cudatoolkit_11_1, cudatoolkit_11_2 +, cudatoolkit_11_3, cudatoolkit_11_4 +}: let generic = args: callPackage (import ./generic.nix (removeAttrs args ["cudatoolkit"])) { @@ -46,5 +48,13 @@ in rec { cudatoolkit = cudatoolkit_11_2; }; - cudnn_cudatoolkit_11 = cudnn_cudatoolkit_11_2; + cudnn_cudatoolkit_11_3 = cudnn_cudatoolkit_11_0.override { + cudatoolkit = cudatoolkit_11_3; + }; + + cudnn_cudatoolkit_11_4 = cudnn_cudatoolkit_11_0.override { + cudatoolkit = cudatoolkit_11_4; + }; + + cudnn_cudatoolkit_11 = cudnn_cudatoolkit_11_4; } diff --git a/pkgs/development/libraries/science/math/cutensor/default.nix b/pkgs/development/libraries/science/math/cutensor/default.nix index b8f4475ce122..25633ca63e6b 100644 --- a/pkgs/development/libraries/science/math/cutensor/default.nix +++ b/pkgs/development/libraries/science/math/cutensor/default.nix @@ -14,8 +14,12 @@ rec { }; cutensor_cudatoolkit_10_2 = cutensor_cudatoolkit_10_1.override { + version = "1.3.1.3"; libPath = "lib/10.2"; cudatoolkit = cudatoolkit_10_2; + # 1.3.1 is compatible with CUDA 11.0, 11.1, and 11.2: + # ephemeral doc at https://developer.nvidia.com/cutensor/downloads + sha256 = "sha256-mNlVnabB2IC3HnYY0mb06RLqQzDxN9ePGVeBy3hkBC8="; }; cutensor_cudatoolkit_10 = cutensor_cudatoolkit_10_2; @@ -41,5 +45,5 @@ rec { cudatoolkit = cudatoolkit_11_4; }; - cutensor_cudatoolkit_11 = cutensor_cudatoolkit_11_2; + cutensor_cudatoolkit_11 = cutensor_cudatoolkit_11_4; } diff --git a/pkgs/development/libraries/science/math/itpp/default.nix b/pkgs/development/libraries/science/math/itpp/default.nix index 81303a3653ec..88560e0cd983 100644 --- a/pkgs/development/libraries/science/math/itpp/default.nix +++ b/pkgs/development/libraries/science/math/itpp/default.nix @@ -45,7 +45,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "IT++ is a C++ library of mathematical, signal processing and communication classes and functions"; - homepage = http://itpp.sourceforge.net/; + homepage = "http://itpp.sourceforge.net/"; license = licenses.gpl3; platforms = platforms.unix; maintainers = with maintainers; [ andrew-d ]; diff --git a/pkgs/development/libraries/science/math/openlibm/default.nix b/pkgs/development/libraries/science/math/openlibm/default.nix index 0252b7baa162..84c01d80d0a6 100644 --- a/pkgs/development/libraries/science/math/openlibm/default.nix +++ b/pkgs/development/libraries/science/math/openlibm/default.nix @@ -1,11 +1,14 @@ -{ lib, stdenv, fetchurl }: +{ lib, stdenv, fetchFromGitHub }: stdenv.mkDerivation rec { pname = "openlibm"; version = "0.8.0"; - src = fetchurl { - url = "https://github.com/JuliaLang/openlibm/archive/v${version}.tar.gz"; - sha256 = "sha256-A2IHaN9MpSamPdZ1xt6VpcnRZ/9ZVVzlemHGv0nkAO4="; + + src = fetchFromGitHub { + owner = "JuliaLang"; + repo = "openlibm"; + rev = "v${version}"; + sha256 = "sha256-dEM10picZXiPokzSHCfxhS7fwZ0sMjil4bni+PHBCeI="; }; makeFlags = [ "prefix=$(out)" ]; diff --git a/pkgs/development/libraries/science/math/or-tools/default.nix b/pkgs/development/libraries/science/math/or-tools/default.nix index 741c6f4898b6..ca3e4a243691 100644 --- a/pkgs/development/libraries/science/math/or-tools/default.nix +++ b/pkgs/development/libraries/science/math/or-tools/default.nix @@ -16,14 +16,14 @@ stdenv.mkDerivation rec { pname = "or-tools"; - version = "9.0"; + version = "9.1"; disabled = python.pythonOlder "3.6"; # not supported upstream src = fetchFromGitHub { owner = "google"; repo = "or-tools"; rev = "v${version}"; - sha256 = "0yihrsg8wj4b82xwg1hbn97my8zqd7xhw7dk7wm2axsyvqd6m3b3"; + sha256 = "sha256-dEYMPWpa3J9EqtCq3kubdUYJivNRTOKUpNDx3UC1IcQ="; }; # The original build system uses cmake which does things like pull diff --git a/pkgs/development/libraries/science/math/osqp/default.nix b/pkgs/development/libraries/science/math/osqp/default.nix index 00f2726f60fe..485ec06773bb 100644 --- a/pkgs/development/libraries/science/math/osqp/default.nix +++ b/pkgs/development/libraries/science/math/osqp/default.nix @@ -5,13 +5,13 @@ stdenv.mkDerivation rec { pname = "osqp"; - version = "0.6.0"; + version = "0.6.2"; src = fetchFromGitHub { owner = "oxfordcontrol"; repo = "osqp"; rev = "v${version}"; - sha256 = "1gwk1bqsk0rd85zf7xplbwq822y5pnxjmqc14jj6knqbab9afvrs"; + sha256 = "sha256-RYk3zuZrJXPcF27eMhdoZAio4DZ+I+nFaUEg1g/aLNk="; fetchSubmodules = true; }; diff --git a/pkgs/development/libraries/science/math/p4est-sc/default.nix b/pkgs/development/libraries/science/math/p4est-sc/default.nix index 338101b80b56..eeb1d14b910a 100644 --- a/pkgs/development/libraries/science/math/p4est-sc/default.nix +++ b/pkgs/development/libraries/science/math/p4est-sc/default.nix @@ -22,11 +22,12 @@ stdenv.mkDerivation { sha256 = "14vm0b162jh8399pgpsikbwq4z5lkrw9vfzy3drqykw09n6nc53z"; }; + strictDeps = true; nativeBuildInputs = [ autoreconfHook pkg-config ]; - propagatedBuildInputs = [ zlib ] - ++ lib.optional mpiSupport mpi + propagatedNativeBuildInputs = lib.optional mpiSupport mpi ++ lib.optional isOpenmpi openssh ; + propagatedBuildInputs = [ zlib ]; inherit debugEnable mpiSupport; postPatch = '' diff --git a/pkgs/development/libraries/science/math/p4est/default.nix b/pkgs/development/libraries/science/math/p4est/default.nix index 68c71ab59be1..c38b0d623bac 100644 --- a/pkgs/development/libraries/science/math/p4est/default.nix +++ b/pkgs/development/libraries/science/math/p4est/default.nix @@ -21,6 +21,7 @@ stdenv.mkDerivation { sha256 = "0vffnf48rzw6d0as4c3x1f31b4kapmdzr1hfj5rz5ngah72gqrph"; }; + strictDeps = true; nativeBuildInputs = [ autoreconfHook pkg-config ]; propagatedBuildInputs = [ p4est-sc ]; buildInputs = lib.optional withMetis metis; diff --git a/pkgs/development/libraries/science/math/petsc/default.nix b/pkgs/development/libraries/science/math/petsc/default.nix index cbd5fa879ee7..1bffb41806c5 100644 --- a/pkgs/development/libraries/science/math/petsc/default.nix +++ b/pkgs/development/libraries/science/math/petsc/default.nix @@ -28,10 +28,12 @@ stdenv.mkDerivation rec { mpiSupport = !withp4est || p4est.mpiSupport; withp4est = petsc-withp4est; - nativeBuildInputs = [ python3 gfortran ]; - buildInputs = [ blas lapack ] + strictDeps = true; + nativeBuildInputs = [ python3 gfortran ] ++ lib.optional mpiSupport mpi ++ lib.optional (mpiSupport && mpi.pname == "openmpi") openssh + ; + buildInputs = [ blas lapack ] ++ lib.optional withp4est p4est ; diff --git a/pkgs/development/libraries/science/math/primesieve/default.nix b/pkgs/development/libraries/science/math/primesieve/default.nix index d4f16d230e60..15b4d6a66a30 100644 --- a/pkgs/development/libraries/science/math/primesieve/default.nix +++ b/pkgs/development/libraries/science/math/primesieve/default.nix @@ -1,14 +1,16 @@ -{ lib, stdenv, fetchurl, cmake }: +{ lib, stdenv, fetchFromGitHub, cmake }: stdenv.mkDerivation rec { pname = "primesieve"; version = "7.6"; - nativeBuildInputs = [cmake]; + nativeBuildInputs = [ cmake ]; - src = fetchurl { - url = "https://github.com/kimwalisch/primesieve/archive/v${version}.tar.gz"; - sha256 = "sha256-SFZp6Pmmx05SiUfSdN9wXxPKrydtRg0PA3uNvAycCpk="; + src = fetchFromGitHub { + owner = "kimwalisch"; + repo = "primesieve"; + rev = "v${version}"; + sha256 = "sha256-rSNYoWBy80BgPi1c+BSKbWTyGGb7/fxmu+mq1DXakHY="; }; meta = with lib; { diff --git a/pkgs/development/libraries/serf/default.nix b/pkgs/development/libraries/serf/default.nix index 2549704c1a8c..4f00e057e3c6 100644 --- a/pkgs/development/libraries/serf/default.nix +++ b/pkgs/development/libraries/serf/default.nix @@ -6,7 +6,7 @@ stdenv.mkDerivation rec { version = "1.3.9"; src = fetchurl { - url = "https://www.apache.org/dist/serf/${pname}-${version}.tar.bz2"; + url = "mirror://apache/serf/${pname}-${version}.tar.bz2"; sha256 = "1k47gbgpp52049andr28y28nbwh9m36bbb0g8p0aka3pqlhjv72l"; }; diff --git a/pkgs/development/libraries/sfml/default.nix b/pkgs/development/libraries/sfml/default.nix index 7ed5070ebb08..cc3fa2df97a0 100644 --- a/pkgs/development/libraries/sfml/default.nix +++ b/pkgs/development/libraries/sfml/default.nix @@ -1,15 +1,33 @@ -{ lib, stdenv, fetchzip, cmake, libX11, freetype, libjpeg, openal, flac, libvorbis -, glew, libXrandr, libXrender, udev, xcbutilimage -, IOKit, Foundation, AppKit, OpenAL +{ lib +, stdenv +, fetchFromGitHub +, cmake +, libX11 +, freetype +, libjpeg +, openal +, flac +, libvorbis +, glew +, libXrandr +, libXrender +, udev +, xcbutilimage +, IOKit +, Foundation +, AppKit +, OpenAL }: stdenv.mkDerivation rec { pname = "sfml"; version = "2.5.1"; - src = fetchzip { - url = "https://github.com/SFML/SFML/archive/${version}.tar.gz"; - sha256 = "0abr8ri2ssfy9ylpgjrr43m6rhrjy03wbj9bn509zqymifvq5pay"; + src = fetchFromGitHub { + owner = "SFML"; + repo = "SFML"; + rev = version; + sha256 = "sha256-Xt2Ct4vV459AsSvJxQfwMsNs6iA5y3epT95pLWJGeSk="; }; nativeBuildInputs = [ cmake ]; @@ -18,10 +36,12 @@ stdenv.mkDerivation rec { ++ lib.optionals (!stdenv.isDarwin) [ libX11 libXrandr libXrender xcbutilimage ] ++ lib.optionals stdenv.isDarwin [ IOKit Foundation AppKit OpenAL ]; - cmakeFlags = [ "-DSFML_INSTALL_PKGCONFIG_FILES=yes" - "-DSFML_MISC_INSTALL_PREFIX=share/SFML" - "-DSFML_BUILD_FRAMEWORKS=no" - "-DSFML_USE_SYSTEM_DEPS=yes" ]; + cmakeFlags = [ + "-DSFML_INSTALL_PKGCONFIG_FILES=yes" + "-DSFML_MISC_INSTALL_PREFIX=share/SFML" + "-DSFML_BUILD_FRAMEWORKS=no" + "-DSFML_USE_SYSTEM_DEPS=yes" + ]; meta = with lib; { homepage = "https://www.sfml-dev.org/"; diff --git a/pkgs/development/libraries/simgear/default.nix b/pkgs/development/libraries/simgear/default.nix index 6167d63544f4..3ce41e3193c5 100644 --- a/pkgs/development/libraries/simgear/default.nix +++ b/pkgs/development/libraries/simgear/default.nix @@ -23,7 +23,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "Simulation construction toolkit"; - homepage = "https://gitorious.org/fg/simgear"; + homepage = "https://wiki.flightgear.org/SimGear"; maintainers = with maintainers; [ raskin ]; platforms = platforms.linux; license = licenses.lgpl2; diff --git a/pkgs/development/libraries/spdlog/default.nix b/pkgs/development/libraries/spdlog/default.nix index 0c75bdb9dd84..d4e0888ffd2f 100644 --- a/pkgs/development/libraries/spdlog/default.nix +++ b/pkgs/development/libraries/spdlog/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchFromGitHub, cmake, fmt }: +{ lib, stdenv, fetchFromGitHub, cmake, fmt_8 }: let generic = { version, sha256 }: @@ -15,7 +15,7 @@ let nativeBuildInputs = [ cmake ]; # spdlog <1.3 uses a bundled version of fmt - propagatedBuildInputs = lib.optional (lib.versionAtLeast version "1.3") fmt; + propagatedBuildInputs = lib.optional (lib.versionAtLeast version "1.3") fmt_8; cmakeFlags = [ "-DSPDLOG_BUILD_SHARED=${if stdenv.hostPlatform.isStatic then "OFF" else "ON"}" @@ -36,7 +36,7 @@ let ''; doCheck = true; - preCheck = "export LD_LIBRARY_PATH=$(pwd):$LD_LIBRARY_PATH"; + preCheck = "export LD_LIBRARY_PATH=$(pwd)\${LD_LIBRARY_PATH:+:}$LD_LIBRARY_PATH"; meta = with lib; { description = "Very fast, header only, C++ logging library"; @@ -49,8 +49,8 @@ let in { spdlog_1 = generic { - version = "1.8.5"; - sha256 = "sha256-D29jvDZQhPscaOHlrzGN1s7/mXlcsovjbqYpXd7OM50="; + version = "1.9.2"; + sha256 = "sha256-GSUdHtvV/97RyDKy8i+ticnSlQCubGGWHg4Oo+YAr8Y="; }; spdlog_0 = generic { diff --git a/pkgs/development/libraries/spice/default.nix b/pkgs/development/libraries/spice/default.nix index 33677303ddcb..0bf09eef19c9 100644 --- a/pkgs/development/libraries/spice/default.nix +++ b/pkgs/development/libraries/spice/default.nix @@ -39,10 +39,10 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ + glib meson ninja pkg-config - spice-protocol python3 python3.pkgs.six python3.pkgs.pyparsing @@ -66,6 +66,7 @@ stdenv.mkDerivation rec { orc pixman python3.pkgs.pyparsing + spice-protocol zlib ]; diff --git a/pkgs/development/libraries/sqlite/tools.nix b/pkgs/development/libraries/sqlite/tools.nix index 6d60321a3044..352577fd2dae 100644 --- a/pkgs/development/libraries/sqlite/tools.nix +++ b/pkgs/development/libraries/sqlite/tools.nix @@ -20,7 +20,7 @@ let meta = with lib; { inherit description homepage; - downloadPage = http://sqlite.org/download.html; + downloadPage = "http://sqlite.org/download.html"; license = licenses.publicDomain; maintainers = with maintainers; [ johnazoidberg ]; platforms = platforms.unix; diff --git a/pkgs/development/libraries/stargate-libcds/Makefile.patch b/pkgs/development/libraries/stargate-libcds/Makefile.patch new file mode 100644 index 000000000000..b5b116b78bec --- /dev/null +++ b/pkgs/development/libraries/stargate-libcds/Makefile.patch @@ -0,0 +1,19 @@ +diff --git a/Makefile b/Makefile +index 872af46..7eba8a1 100644 +--- a/Makefile ++++ b/Makefile +@@ -156,13 +156,7 @@ test: + # Compile and run the test suite through Valgrind to check for + # memory errors, then generate an HTML code coverage report + # using gcovr +- $(CC) $(CC_ARGS) -O0 $(DEBUG_FLAGS) $(PLAT_FLAGS) $(GCOVARGS) \ ++ $(CC) $(CC_ARGS) -O0 $(DEBUG_FLAGS) $(PLAT_FLAGS) \ + $(shell find src tests -name *.c) \ + -Iinclude \ + -o $(NAME).tests +- # If Valgrind exits non-zero, try running 'gdb ./libcds.tests' +- # to debug the test suite +- valgrind ./$(NAME).tests --track-origins=yes --leak-check=full +- mkdir html || rm -rf html/* +- gcovr -r . --exclude=bench --html --html-details -o html/coverage.html +- $(BROWSER) html/coverage.html & diff --git a/pkgs/development/libraries/stargate-libcds/default.nix b/pkgs/development/libraries/stargate-libcds/default.nix new file mode 100644 index 000000000000..409d9e820fce --- /dev/null +++ b/pkgs/development/libraries/stargate-libcds/default.nix @@ -0,0 +1,47 @@ +{ lib +, stdenv +, fetchpatch +, fetchFromGitHub +}: + +stdenv.mkDerivation rec { + pname = "stargate-libcds"; + version = "1.0.0"; + + src = fetchFromGitHub { + owner = "stargateaudio"; + repo = "libcds"; + rev = version; + sha256 = "sha256-THThEzS8gGdwn3h0EBttaX5ljZH9Ma2Rcg143+GIdU8="; + }; + + # Fix 'error: unrecognized command line option' in platforms other than x86 + PLAT_FLAGS = lib.optionalString stdenv.isx86_64 "-mfpmath=sse -mssse3"; + + patches = [ + # Remove unecessary tests (valgrind, coverage) + ./Makefile.patch + + # Fix for building on darwin + (fetchpatch { + name = "malloc-to-stdlib.patch"; + url = "https://github.com/stargateaudio/libcds/commit/65dc08f059deda8ba5707ba6116b616d0ad0bd8d.patch"; + sha256 = "sha256-FIGlobUVrDYOtnHjsWyE420PoULPHEK/3T9Fv8hfTl4="; + }) + ]; + + doCheck = true; + + installPhase = '' + runHook preInstall + install -D libcds.so -t $out/lib/ + runHook postInstall + ''; + + meta = with lib; { + description = "C data structure library"; + homepage = "https://github.com/stargateaudio/libcds"; + maintainers = with maintainers; [ yuu ]; + license = licenses.lgpl3Only; + }; +} diff --git a/pkgs/development/libraries/stb/default.nix b/pkgs/development/libraries/stb/default.nix index a3020e14d3e1..22a97d890e56 100644 --- a/pkgs/development/libraries/stb/default.nix +++ b/pkgs/development/libraries/stb/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation { pname = "stb"; - version = "20180211"; + version = "unstable-2021-09-10"; src = fetchFromGitHub { owner = "nothings"; repo = "stb"; - rev = "e6afb9cbae4064da8c3e69af3ff5c4629579c1d2"; - sha256 = "079nsn9bnb8c0vfq26g5l53q6gzx19a5x9q2nb55mpcljxsgxnmf"; + rev = "af1a5bc352164740c1cc1354942b1c6b72eacb8a"; + sha256 = "0qq35cd747lll4s7bmnxb3pqvyp2hgcr9kyf758fax9lx76iwjhr"; }; dontBuild = true; diff --git a/pkgs/development/libraries/stxxl/default.nix b/pkgs/development/libraries/stxxl/default.nix index eec4f722d411..5cc0e6037a23 100644 --- a/pkgs/development/libraries/stxxl/default.nix +++ b/pkgs/development/libraries/stxxl/default.nix @@ -1,4 +1,7 @@ -{ lib, stdenv, fetchurl, cmake +{ lib +, stdenv +, fetchFromGitHub +, cmake , parallel ? true }: @@ -10,9 +13,11 @@ stdenv.mkDerivation rec { pname = "stxxl"; version = "1.4.1"; - src = fetchurl { - url = "https://github.com/stxxl/stxxl/archive/${version}.tar.gz"; - sha256 = "54006a5fccd1435abc2f3ec201997a4d7dacddb984d2717f62191798e5372f6c"; + src = fetchFromGitHub { + owner = "stxxl"; + repo = "stxxl"; + rev = version; + sha256 = "sha256-U6DQ5mI83pyTmq5/ga5rI8v0h2/iEnNl8mxhIOpbF1I="; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/development/libraries/tdlib/default.nix b/pkgs/development/libraries/tdlib/default.nix index 25935ca71c39..efad8832a31b 100644 --- a/pkgs/development/libraries/tdlib/default.nix +++ b/pkgs/development/libraries/tdlib/default.nix @@ -1,16 +1,15 @@ { fetchFromGitHub, gperf, openssl, readline, zlib, cmake, lib, stdenv }: stdenv.mkDerivation rec { - version = "1.7.8"; pname = "tdlib"; + version = "1.7.9"; src = fetchFromGitHub { owner = "tdlib"; repo = "td"; - - rev = "a68d8e77efb03896f3a04fc316c47136b0bab7df"; - - sha256 = "0zis1mxb495lazmhax91h94nw73nyq82bhbx3f1zlxkvc8664099"; + # https://github.com/tdlib/td/issues/1718 + rev = "7d41d9eaa58a6e0927806283252dc9e74eda5512"; + sha256 = "09b7srbfqi4gmg5pdi398pr0pxihw4d3cw85ycky54g862idzqs8"; }; buildInputs = [ gperf openssl readline zlib ]; diff --git a/pkgs/development/libraries/tinycbor/default.nix b/pkgs/development/libraries/tinycbor/default.nix index 0890ab60c2b1..4826c2b49c1f 100644 --- a/pkgs/development/libraries/tinycbor/default.nix +++ b/pkgs/development/libraries/tinycbor/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "tinycbor"; - version = "0.5.4"; + version = "0.6.0"; src = fetchFromGitHub { owner = "intel"; repo = "tinycbor"; rev = "v${version}"; - sha256 = "sha256-H0NTUaSOGMtbM1+EQVOsYoPP+A1FGvUM7XrbPxArR88="; + sha256 = "1ph1cmsh4hm6ikd3bs45mnv9zmniyrvp2rrg8qln204kr6fngfcd"; }; makeFlags = [ "prefix=$(out)" ]; diff --git a/pkgs/development/libraries/tracker-miners/default.nix b/pkgs/development/libraries/tracker-miners/default.nix index 2668de9b4612..e3c74bd2fe45 100644 --- a/pkgs/development/libraries/tracker-miners/default.nix +++ b/pkgs/development/libraries/tracker-miners/default.nix @@ -47,11 +47,11 @@ stdenv.mkDerivation rec { pname = "tracker-miners"; - version = "3.2.0"; + version = "3.2.1"; src = fetchurl { url = "mirror://gnome/sources/${pname}/${lib.versions.majorMinor version}/${pname}-${version}.tar.xz"; - sha256 = "sha256-Bi+C3VSKYq7IUQWFAROskBpiK8UcbPxjIFY2Xof4GYE="; + sha256 = "RDafU+Lt70FDdAbb7s1Hepf4qa/dkTSDLqRdG6KqLEc="; }; nativeBuildInputs = [ diff --git a/pkgs/development/libraries/unixODBCDrivers/default.nix b/pkgs/development/libraries/unixODBCDrivers/default.nix index b766b933a656..b4e574e85b1a 100644 --- a/pkgs/development/libraries/unixODBCDrivers/default.nix +++ b/pkgs/development/libraries/unixODBCDrivers/default.nix @@ -8,7 +8,7 @@ version = "10.01.0000"; src = fetchurl { - url = "http://ftp.postgresql.org/pub/odbc/versions/src/${pname}-${version}.tar.gz"; + url = "mirror://postgresql/odbc/versions/src/${pname}-${version}.tar.gz"; sha256 = "1cyams7157f3gry86x64xrplqi2vyqrq3rqka59gv4lb4rpl7jl7"; }; diff --git a/pkgs/development/libraries/utf8cpp/default.nix b/pkgs/development/libraries/utf8cpp/default.nix index a6d9628a6c38..c5d4fd061a07 100644 --- a/pkgs/development/libraries/utf8cpp/default.nix +++ b/pkgs/development/libraries/utf8cpp/default.nix @@ -18,7 +18,9 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ cmake ]; - doCheck = true; + # Tests fail on darwin, probably due to a bug in the test framework: + # https://github.com/nemtrif/utfcpp/issues/84 + doCheck = !stdenv.isDarwin; meta = with lib; { homepage = "https://github.com/nemtrif/utfcpp"; diff --git a/pkgs/development/libraries/vaapi-intel-hybrid/default.nix b/pkgs/development/libraries/vaapi-intel-hybrid/default.nix index 00e9a2042b7a..e137f97698eb 100644 --- a/pkgs/development/libraries/vaapi-intel-hybrid/default.nix +++ b/pkgs/development/libraries/vaapi-intel-hybrid/default.nix @@ -1,12 +1,14 @@ -{ lib, stdenv, fetchurl, autoreconfHook, pkg-config, cmrt, libdrm, libva, libX11, libGL, wayland }: +{ lib, stdenv, fetchurl, fetchFromGitHub, autoreconfHook, pkg-config, cmrt, libdrm, libva, libX11, libGL, wayland }: stdenv.mkDerivation rec { pname = "intel-hybrid-driver"; version = "1.0.2"; - src = fetchurl { - url = "https://github.com/01org/intel-hybrid-driver/archive/${version}.tar.gz"; - sha256 = "0ywdhbvzwzzrq4qhylnw1wc8l3j67h26l0cs1rncwhw05s3ndk8n"; + src = fetchFromGitHub { + owner = "01org"; + repo = "intel-hybrid-driver"; + rev = version; + sha256 = "sha256-uYX7RoU1XVzcC2ea3z/VBjmT47xmzK67Y4LaiFXyJZ8="; }; patches = [ diff --git a/pkgs/development/libraries/vc/0.7.nix b/pkgs/development/libraries/vc/0.7.nix index dd5b03f2dc50..310635d9cbf3 100644 --- a/pkgs/development/libraries/vc/0.7.nix +++ b/pkgs/development/libraries/vc/0.7.nix @@ -11,6 +11,9 @@ stdenv.mkDerivation rec { sha256 = "190s4r2n3jsivl4j2m288j3rqmgjj6gl308hi9mzwyhcfn17q8br"; }; + # Avoid requesting an unreasonable intrinsic + patches = lib.optional stdenv.cc.isClang ./vc_0_7_clang_fix.patch; + nativeBuildInputs = [ cmake ]; postPatch = '' diff --git a/pkgs/development/libraries/vc/vc_0_7_clang_fix.patch b/pkgs/development/libraries/vc/vc_0_7_clang_fix.patch new file mode 100644 index 000000000000..29ea6f529490 --- /dev/null +++ b/pkgs/development/libraries/vc/vc_0_7_clang_fix.patch @@ -0,0 +1,28 @@ +diff -ur a/sse/intrinsics.h b/sse/intrinsics.h +--- a/sse/intrinsics.h 2021-11-12 22:09:50.000000000 -0500 ++++ b/sse/intrinsics.h 2021-11-12 22:14:08.000000000 -0500 +@@ -498,16 +498,6 @@ + case 0: + f = _mm_cvtss_f32(v); + break; +-#if defined VC_IMPL_SSE4_1 && !defined VC_MSVC +- default: +-#ifdef VC_GCC +- f = __builtin_ia32_vec_ext_v4sf(static_cast<__v4sf>(v), (i)); +-#else +- // MSVC fails to compile this because it can't optimize i to an immediate +- _MM_EXTRACT_FLOAT(f, v, i); +-#endif +- break; +-#else + case 1: + f = _mm_cvtss_f32(_mm_castsi128_ps(_mm_srli_si128(_mm_castps_si128(v), 4))); + break; +@@ -517,7 +507,6 @@ + case 3: + f = _mm_cvtss_f32(_mm_castsi128_ps(_mm_srli_si128(_mm_castps_si128(v), 12))); + break; +-#endif + } + return f; + } diff --git a/pkgs/development/libraries/vigra/default.nix b/pkgs/development/libraries/vigra/default.nix index 56402172d9ff..d6d43e6a1fb3 100644 --- a/pkgs/development/libraries/vigra/default.nix +++ b/pkgs/development/libraries/vigra/default.nix @@ -1,35 +1,65 @@ -{ lib, stdenv, fetchurl, boost, cmake, fftw, fftwSinglePrec, hdf5, ilmbase -, libjpeg, libpng, libtiff, openexr, python2Packages }: +{ lib +, stdenv +, fetchFromGitHub +, fetchurl +, boost +, cmake +, fftw +, fftwSinglePrec +, hdf5 +, ilmbase +, libjpeg +, libpng +, libtiff +, openexr +, python2Packages +}: let inherit (python2Packages) python numpy; # Might want to use `python2.withPackages(ps: [ps.numpy]);` here... -in stdenv.mkDerivation rec { +in +stdenv.mkDerivation rec { pname = "vigra"; version = "1.11.1"; - src = fetchurl { - url = "https://github.com/ukoethe/vigra/archive/Version-${lib.replaceChars ["."] ["-"] version}.tar.gz"; - sha256 = "03i5wfscv83jb8vnwwhfmm8yfiniwkvk13myzhr1kbwbs9884wdj"; + src = fetchFromGitHub { + owner = "ukoethe"; + repo = "vigra"; + rev = "Version-${lib.replaceChars ["."] ["-"] version}"; + sha256 = "sha256-tD6tdoT4mWBtzkn4Xv3nNIkBQmeqNqzI1AVxUbP76Mk="; }; NIX_CFLAGS_COMPILE = "-I${ilmbase.dev}/include/OpenEXR"; # Fixes compilation with clang (on darwin) see https://github.com/ukoethe/vigra/issues/414 patches = - let clangPatch = fetchurl { url = "https://github.com/ukoethe/vigra/commit/81958d302494e137f98a8b1d7869841532f90388.patch"; - sha256 = "1i1w6smijgb5z8bg9jaq84ccy00k2sxm87s37lgjpyix901gjlgi"; }; + let clangPatch = fetchurl { + url = "https://github.com/ukoethe/vigra/commit/81958d302494e137f98a8b1d7869841532f90388.patch"; + sha256 = "1i1w6smijgb5z8bg9jaq84ccy00k2sxm87s37lgjpyix901gjlgi"; + }; in [ clangPatch ]; nativeBuildInputs = [ cmake ]; - buildInputs = [ boost fftw fftwSinglePrec hdf5 ilmbase libjpeg libpng - libtiff numpy openexr python ]; + buildInputs = [ + boost + fftw + fftwSinglePrec + hdf5 + ilmbase + libjpeg + libpng + libtiff + numpy + openexr + python + ]; preConfigure = "cmakeFlags+=\" -DVIGRANUMPY_INSTALL_DIR=$out/lib/${python.libPrefix}/site-packages\""; cmakeFlags = [ "-DWITH_OPENEXR=1" ] - ++ lib.optionals (stdenv.hostPlatform.system == "x86_64-linux") - [ "-DCMAKE_CXX_FLAGS=-fPIC" "-DCMAKE_C_FLAGS=-fPIC" ]; + ++ lib.optionals (stdenv.hostPlatform.system == "x86_64-linux") + [ "-DCMAKE_CXX_FLAGS=-fPIC" "-DCMAKE_C_FLAGS=-fPIC" ]; # fails with "./test_watersheds3d: error while loading shared libraries: libvigraimpex.so.11: cannot open shared object file: No such file or directory" doCheck = false; diff --git a/pkgs/development/libraries/vo-amrwbenc/default.nix b/pkgs/development/libraries/vo-amrwbenc/default.nix index dccbd1349d2c..8ad78703d531 100644 --- a/pkgs/development/libraries/vo-amrwbenc/default.nix +++ b/pkgs/development/libraries/vo-amrwbenc/default.nix @@ -1,17 +1,18 @@ -{ lib, stdenv, fetchurl, autoreconfHook }: +{ lib, stdenv, fetchFromGitHub, autoreconfHook }: -let - version = "0.1.3"; -in -stdenv.mkDerivation { - name = "vo-amrwbenc-${version}"; +stdenv.mkDerivation rec{ + pname = "vo-amrwbenc"; version = "0.1.3"; - buildInputs = [ autoreconfHook ]; - src = fetchurl { - url = "https://github.com/mstorsjo/vo-amrwbenc/archive/v${version}.tar.gz"; - sha256 = "85c79997ba7ddb9c95b5ddbe9ea032e27595390f3cbd686ed46a69e485cc053c"; + + src = fetchFromGitHub { + owner = "mstorsjo"; + repo = "vo-amrwbenc"; + rev = "v${version}"; + sha256 = "sha256-oHhoJAI47VqBGk9cO3G5oqnHpWxA2jnJs103MwcYj+w="; }; + nativeBuildInputs = [ autoreconfHook ]; + meta = { homepage = "https://sourceforge.net/projects/opencore-amr/"; description = "VisualOn Adaptive Multi Rate Wideband (AMR-WB) encoder"; diff --git a/pkgs/development/libraries/webkitgtk/428774.patch b/pkgs/development/libraries/webkitgtk/428774.patch deleted file mode 100644 index 85da185dc4e4..000000000000 --- a/pkgs/development/libraries/webkitgtk/428774.patch +++ /dev/null @@ -1,86 +0,0 @@ -diff -aru a/Source/WebKit/NetworkProcess/ServiceWorker/WebSWOriginStore.cpp b/Source/WebKit/NetworkProcess/ServiceWorker/WebSWOriginStore.cpp ---- a/Source/WebKit/NetworkProcess/ServiceWorker/WebSWOriginStore.cpp 2021-02-26 04:57:15.000000000 -0500 -+++ b/Source/WebKit/NetworkProcess/ServiceWorker/WebSWOriginStore.cpp 2021-05-16 14:45:32.000000000 -0400 -@@ -87,7 +87,7 @@ - if (!m_store.createSharedMemoryHandle(handle)) - return; - --#if OS(DARWIN) || OS(WINDOWS) -+#if (OS(DARWIN) || OS(WINDOWS)) && !USE(UNIX_DOMAIN_SOCKETS) - uint64_t dataSize = handle.size(); - #else - uint64_t dataSize = 0; -diff -aru a/Source/WebKit/Platform/IPC/IPCSemaphore.cpp b/Source/WebKit/Platform/IPC/IPCSemaphore.cpp ---- a/Source/WebKit/Platform/IPC/IPCSemaphore.cpp 2021-02-26 04:57:15.000000000 -0500 -+++ b/Source/WebKit/Platform/IPC/IPCSemaphore.cpp 2021-05-16 15:54:53.000000000 -0400 -@@ -26,8 +26,6 @@ - #include "config.h" - #include "IPCSemaphore.h" - --#if !OS(DARWIN) -- - namespace IPC { - - Semaphore::Semaphore() = default; -@@ -46,5 +44,3 @@ - } - - } -- --#endif -diff -aru a/Source/WebKit/Platform/IPC/IPCSemaphore.h b/Source/WebKit/Platform/IPC/IPCSemaphore.h ---- a/Source/WebKit/Platform/IPC/IPCSemaphore.h 2021-02-26 04:57:15.000000000 -0500 -+++ b/Source/WebKit/Platform/IPC/IPCSemaphore.h 2021-05-16 14:46:13.000000000 -0400 -@@ -29,7 +29,7 @@ - #include <wtf/Optional.h> - #include <wtf/Seconds.h> - --#if OS(DARWIN) -+#if PLATFORM(COCOA) - #include <mach/semaphore.h> - #include <wtf/MachSendRight.h> - #endif -@@ -51,7 +51,7 @@ - void encode(Encoder&) const; - static Optional<Semaphore> decode(Decoder&); - --#if OS(DARWIN) -+#if PLATFORM(COCOA) - explicit Semaphore(MachSendRight&&); - - void signal(); -@@ -64,7 +64,7 @@ - #endif - - private: --#if OS(DARWIN) -+#if PLATFORM(COCOA) - void destroy(); - MachSendRight m_sendRight; - semaphore_t m_semaphore { SEMAPHORE_NULL }; -Only in b/Source/WebKit/Platform/IPC: IPCSemaphore.h.orig -diff -aru a/Source/WebKit/Platform/SharedMemory.h b/Source/WebKit/Platform/SharedMemory.h ---- a/Source/WebKit/Platform/SharedMemory.h 2021-02-26 04:57:15.000000000 -0500 -+++ b/Source/WebKit/Platform/SharedMemory.h 2021-05-16 14:45:32.000000000 -0400 -@@ -75,7 +75,7 @@ - - bool isNull() const; - --#if OS(DARWIN) || OS(WINDOWS) -+#if (OS(DARWIN) || OS(WINDOWS)) && !USE(UNIX_DOMAIN_SOCKETS) - size_t size() const { return m_size; } - #endif - -diff -aru a/Source/WebKit/UIProcess/VisitedLinkStore.cpp b/Source/WebKit/UIProcess/VisitedLinkStore.cpp ---- a/Source/WebKit/UIProcess/VisitedLinkStore.cpp 2021-02-26 04:57:16.000000000 -0500 -+++ b/Source/WebKit/UIProcess/VisitedLinkStore.cpp 2021-05-16 14:45:32.000000000 -0400 -@@ -119,7 +119,7 @@ - return; - - // FIXME: Get the actual size of data being sent from m_linkHashStore and send it in the SharedMemory::IPCHandle object. --#if OS(DARWIN) || OS(WINDOWS) -+#if (OS(DARWIN) || OS(WINDOWS)) && !USE(UNIX_DOMAIN_SOCKETS) - uint64_t dataSize = handle.size(); - #else - uint64_t dataSize = 0; -Only in b/Source/WebKit/WebProcess/WebPage/CoordinatedGraphics: DrawingAreaCoordinatedGraphics.cpp.orig diff --git a/pkgs/development/libraries/webkitgtk/default.nix b/pkgs/development/libraries/webkitgtk/default.nix index 761c97510b76..304dfbc2e784 100644 --- a/pkgs/development/libraries/webkitgtk/default.nix +++ b/pkgs/development/libraries/webkitgtk/default.nix @@ -1,7 +1,6 @@ { lib, stdenv , runCommand , fetchurl -, fetchpatch , perl , python3 , ruby @@ -83,26 +82,6 @@ stdenv.mkDerivation rec { inherit (addOpenGLRunpath) driverLink; }) ./libglvnd-headers.patch - ] ++ lib.optionals stdenv.isDarwin [ - # https://bugs.webkit.org/show_bug.cgi?id=225856 - (fetchpatch { - url = "https://bug-225856-attachments.webkit.org/attachment.cgi?id=428797"; - sha256 = "sha256-ffo5p2EyyjXe3DxdrvAcDKqxwnoqHtYBtWod+1fOjMU="; - excludes = [ "Source/WebCore/ChangeLog" ]; - }) - - # https://bugs.webkit.org/show_bug.cgi?id=225850 - ./428774.patch # https://bug-225850-attachments.webkit.org/attachment.cgi?id=428774 - (fetchpatch { - url = "https://bug-225850-attachments.webkit.org/attachment.cgi?id=428776"; - sha256 = "sha256-ryNRYMsk72SL0lNdh6eaAdDV3OT8KEqVq1H0j581jmQ="; - excludes = [ "Source/WTF/ChangeLog" ]; - }) - (fetchpatch { - url = "https://bug-225850-attachments.webkit.org/attachment.cgi?id=428778"; - sha256 = "sha256-78iP+T2vaIufO8TmIPO/tNDgmBgzlDzalklrOPrtUeo="; - excludes = [ "Source/WebKit/ChangeLog" ]; - }) ]; preConfigure = lib.optionalString (stdenv.hostPlatform != stdenv.buildPlatform) '' @@ -231,5 +210,6 @@ stdenv.mkDerivation rec { license = licenses.bsd2; platforms = platforms.linux ++ platforms.darwin; maintainers = teams.gnome.members; + broken = stdenv.isDarwin; }; } diff --git a/pkgs/development/libraries/wolfssl/default.nix b/pkgs/development/libraries/wolfssl/default.nix index d696961a4eb0..42505311acd9 100644 --- a/pkgs/development/libraries/wolfssl/default.nix +++ b/pkgs/development/libraries/wolfssl/default.nix @@ -6,13 +6,13 @@ stdenv.mkDerivation rec { pname = "wolfssl"; - version = "4.8.1"; + version = "5.0.0"; src = fetchFromGitHub { owner = "wolfSSL"; repo = "wolfssl"; rev = "v${version}-stable"; - sha256 = "1w9gs9cq2yhj5s3diz3x1l15pgrc1pbm00jccizvcjyibmwyyf2h"; + sha256 = "sha256-rv9D+P42RMH1O4YLQbZIEkD6KQfs8KgYjhnHeA9vQqE="; }; # Almost same as Debian but for now using --enable-all --enable-reproducible-build instead of --enable-distro to ensure options.h gets installed @@ -20,6 +20,7 @@ stdenv.mkDerivation rec { "--enable-all" "--enable-base64encode" "--enable-pkcs11" + "--enable-writedup" "--enable-reproducible-build" "--enable-tls13" ]; diff --git a/pkgs/development/libraries/xalanc/default.nix b/pkgs/development/libraries/xalanc/default.nix index b757b737f976..a532b42c1976 100644 --- a/pkgs/development/libraries/xalanc/default.nix +++ b/pkgs/development/libraries/xalanc/default.nix @@ -9,7 +9,7 @@ in stdenv.mkDerivation rec { version = "1.11"; src = fetchurl { - url = "http://www.eu.apache.org/dist/xalan/xalan-c/sources/xalan_c-${version}-src.tar.gz"; + url = "mirror://apache/xalan/xalan-c/sources/xalan_c-${version}-src.tar.gz"; sha256 = "0a3a2b15vpacnqgpp6fiy1pwyc8q6ywzvyb5445f6wixfdspypjg"; }; diff --git a/pkgs/development/libraries/xdg-desktop-portal/default.nix b/pkgs/development/libraries/xdg-desktop-portal/default.nix index 71674a6c3886..bb8950ca1ec9 100644 --- a/pkgs/development/libraries/xdg-desktop-portal/default.nix +++ b/pkgs/development/libraries/xdg-desktop-portal/default.nix @@ -1,6 +1,7 @@ { stdenv , lib , fetchFromGitHub +, fetchpatch , nixosTests , substituteAll , autoreconfHook @@ -38,6 +39,12 @@ stdenv.mkDerivation rec { src = ./fix-paths.patch; inherit flatpak; }) + # Fixes the issue in https://github.com/flatpak/xdg-desktop-portal/issues/636 + # Remove it when the next stable release arrives + (fetchpatch { + url = "https://github.com/flatpak/xdg-desktop-portal/commit/d7622e15ff8fef114a6759dde564826d04215a9f.patch"; + sha256 = "sha256-vmfxK4ddG6Xon//rpiz6OiBsDLtT0VG5XyBJG3E4PPs="; + }) ]; nativeBuildInputs = [ diff --git a/pkgs/development/libraries/xml-security-c/default.nix b/pkgs/development/libraries/xml-security-c/default.nix index 7548a45e5d41..c3275c0ad507 100644 --- a/pkgs/development/libraries/xml-security-c/default.nix +++ b/pkgs/development/libraries/xml-security-c/default.nix @@ -5,7 +5,7 @@ stdenv.mkDerivation rec { version = "2.0.2"; src = fetchurl { - url = "https://www.apache.org/dist/santuario/c-library/${pname}-${version}.tar.gz"; + url = "mirror://apache/santuario/c-library/${pname}-${version}.tar.gz"; sha256 = "1prh5sxzipkqglpsh53iblbr7rxi54wbijxdjiahzjmrijqa40y3"; }; diff --git a/pkgs/development/libraries/xmlsec/default.nix b/pkgs/development/libraries/xmlsec/default.nix index b86189306b8a..1f63b2cfc871 100644 --- a/pkgs/development/libraries/xmlsec/default.nix +++ b/pkgs/development/libraries/xmlsec/default.nix @@ -4,11 +4,11 @@ lib.fix (self: stdenv.mkDerivation rec { pname = "xmlsec"; - version = "1.2.32"; + version = "1.2.33"; src = fetchurl { url = "https://www.aleksey.com/xmlsec/download/xmlsec1-${version}.tar.gz"; - sha256 = "sha256-44NwKFMjYATlsI5CS4r+m1P+nzGqp6U4LznZUz63wEM="; + sha256 = "sha256-JgQdNaIKJF7Vovue4HXxCCVmTSdCIMtRkDQPqHpNCTE="; }; patches = [ diff --git a/pkgs/development/libraries/zydis/default.nix b/pkgs/development/libraries/zydis/default.nix index dd3f4b916314..20f403eb8666 100644 --- a/pkgs/development/libraries/zydis/default.nix +++ b/pkgs/development/libraries/zydis/default.nix @@ -2,14 +2,14 @@ stdenv.mkDerivation rec { pname = "zydis"; - version = "3.1.0"; + version = "3.2.0"; src = fetchFromGitHub { owner = "zyantific"; repo = "zydis"; - rev = "bfee99f49274a0eec3ffea16ede3a5bda9cda88f"; - sha256 = "0x2lpc33ynd0zzirdxp2lycvg3545wh1ssgy4qlv81471iwwzv6b"; + rev = "v${version}"; fetchSubmodules = true; + sha256 = "sha256-1XGELwMuFlIt6Z3+kfD6VAgDZOwhhCSG42dkYh7WLf8="; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-overrides.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-overrides.nix index b9054baab1d1..e9cdf50b15ab 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-overrides.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-overrides.nix @@ -298,7 +298,7 @@ $out/lib/common-lisp/query-fs" patch -p1 < ${ pkgs.fetchurl { # https://github.com/sabracrolleton/uax-15/pull/12 - url = https://github.com/nuddyco/uax-15/commit/d553181669f488636df03d60ad7f5bec64d566bf.diff; + url = "https://github.com/nuddyco/uax-15/commit/d553181669f488636df03d60ad7f5bec64d566bf.diff"; sha256 = "sha256:1608jzw7giy18vlw7pz4pl8prwlprgif8zcl9hwa0wf5gdxwd7gn"; }} ''; diff --git a/pkgs/development/lua-modules/overrides.nix b/pkgs/development/lua-modules/overrides.nix index f01fb7df1172..9190f1fff864 100644 --- a/pkgs/development/lua-modules/overrides.nix +++ b/pkgs/development/lua-modules/overrides.nix @@ -88,7 +88,7 @@ with prev; ]; }); - ljsyscall = prev.ljsyscall.overrideAttrs(oa: rec { + ljsyscall = prev.lib.overrideLuarocks prev.ljsyscall (drv: rec { version = "unstable-20180515"; # package hasn't seen any release for a long time src = pkgs.fetchFromGitHub { diff --git a/pkgs/development/misc/msp430/mspds/binary.nix b/pkgs/development/misc/msp430/mspds/binary.nix index 690ed3e45e71..2fc306f8e5ff 100644 --- a/pkgs/development/misc/msp430/mspds/binary.nix +++ b/pkgs/development/misc/msp430/mspds/binary.nix @@ -27,7 +27,7 @@ in stdenv.mkDerivation rec { meta = { description = "Unfree binary release of the TI MSP430 FET debug driver"; - homepage = https://www.ti.com/tool/MSPDS; + homepage = "https://www.ti.com/tool/MSPDS"; license = licenses.unfree; platforms = platforms.linux ++ platforms.darwin; maintainers = with maintainers; [ aerialx ]; diff --git a/pkgs/development/misc/msp430/mspds/default.nix b/pkgs/development/misc/msp430/mspds/default.nix index 2481b50bfbef..891e7d980b4a 100644 --- a/pkgs/development/misc/msp430/mspds/default.nix +++ b/pkgs/development/misc/msp430/mspds/default.nix @@ -48,7 +48,7 @@ in stdenv.mkDerivation { meta = { description = "TI MSP430 FET debug driver"; - homepage = https://www.ti.com/tool/MSPDS; + homepage = "https://www.ti.com/tool/MSPDS"; license = licenses.bsd3; platforms = platforms.linux ++ platforms.darwin; maintainers = with maintainers; [ aerialx ]; diff --git a/pkgs/development/misc/resholve/source.nix b/pkgs/development/misc/resholve/source.nix index 5633e90f4bb0..046f9ffe24f8 100644 --- a/pkgs/development/misc/resholve/source.nix +++ b/pkgs/development/misc/resholve/source.nix @@ -3,7 +3,7 @@ }: rec { - version = "0.6.6"; + version = "0.6.8"; rSrc = # local build -> `make ci`; `make clean` to restore # return to remote source @@ -14,6 +14,6 @@ rec { owner = "abathur"; repo = "resholve"; rev = "v${version}"; - hash = "sha256-bupf3c9tNPAEMzFEDcvg483bSiwZFuB3ZqveG89dgkE="; + hash = "sha256-1bb22GcOIzmQ31ULZuNNCJ8Vcz4Y0+qAhsJ9PhbqnDM="; }; } diff --git a/pkgs/development/misc/resholve/test.nix b/pkgs/development/misc/resholve/test.nix index dd847462420b..2c17cf2ea038 100644 --- a/pkgs/development/misc/resholve/test.nix +++ b/pkgs/development/misc/resholve/test.nix @@ -21,10 +21,17 @@ , rSrc , runDemo ? false , binlore +, sqlite +, util-linux +, gawk +, rlwrap +, gnutar +, bc }: let - + default_packages = [ bash file findutils gettext ]; + parsed_packages = [ coreutils sqlite util-linux gnused gawk findutils rlwrap gnutar bc ]; in rec { re_shunit2 = with shunit2; @@ -56,9 +63,6 @@ rec { "/usr/bin/od" = true; }; keep = { - # dynamically defined in shunit2:_shunit_mktempFunc - eval = [ "shunit_condition_" "_shunit_test_" "_shunit_prepForSourcing" ]; - # variables invoked as commands; long-term goal is to # resolve the *variable*, but that is complexish, so # this is where we are... @@ -166,13 +170,14 @@ rec { # LOGLEVEL="DEBUG"; # default path - RESHOLVE_PATH = "${lib.makeBinPath [ bash file findutils gettext ]}"; + RESHOLVE_PATH = "${lib.makeBinPath default_packages}"; # but separate packages for combining as needed PKG_FILE = "${lib.makeBinPath [ file ]}"; PKG_FINDUTILS = "${lib.makeBinPath [ findutils ]}"; PKG_GETTEXT = "${lib.makeBinPath [ gettext ]}"; PKG_COREUTILS = "${lib.makeBinPath [ coreutils ]}"; - RESHOLVE_LORE = "${binlore.collect { drvs = [ bash file findutils gettext coreutils ]; } }"; + RESHOLVE_LORE = "${binlore.collect { drvs = default_packages ++ [ coreutils ] ++ parsed_packages; } }"; + PKG_PARSED = "${lib.makeBinPath parsed_packages}"; # explicit interpreter for demo suite; maybe some better way... INTERP = "${bash}/bin/bash"; diff --git a/pkgs/development/mobile/androidenv/compose-android-packages.nix b/pkgs/development/mobile/androidenv/compose-android-packages.nix index 316c1ba8313e..25a19d059f23 100644 --- a/pkgs/development/mobile/androidenv/compose-android-packages.nix +++ b/pkgs/development/mobile/androidenv/compose-android-packages.nix @@ -64,9 +64,9 @@ let addons = repoXmls.addons or []; }; in - builtins.fromJSON (builtins.readFile "${mkRepoJson repoXmlSpec}") + lib.importJSON "${mkRepoJson repoXmlSpec}" else - builtins.fromJSON (builtins.readFile repoJson); + lib.importJSON repoJson; # Converts all 'archives' keys in a repo spec to fetchurl calls. fetchArchives = attrSet: diff --git a/pkgs/development/mobile/genymotion/default.nix b/pkgs/development/mobile/genymotion/default.nix index 1aa81132c260..282324d20508 100644 --- a/pkgs/development/mobile/genymotion/default.nix +++ b/pkgs/development/mobile/genymotion/default.nix @@ -1,21 +1,34 @@ { stdenv, lib, fetchurl, makeWrapper, which, zlib, libGL, glib, xorg, libxkbcommon -, xdg-utils +, xdg-utils, libXrender, fontconfig, freetype, systemd, libpulseaudio # For glewinfo , libXmu, libXi, libXext }: let packages = [ - stdenv.cc.cc zlib glib xorg.libX11 libxkbcommon libXmu libXi libXext libGL + stdenv.cc.cc + zlib + glib + xorg.libX11 + libxkbcommon + libXmu + libXi + libXext + libGL + libXrender + fontconfig + freetype + systemd + libpulseaudio ]; libPath = lib.makeLibraryPath packages; in stdenv.mkDerivation rec { pname = "genymotion"; - version = "2.8.0"; + version = "3.2.1"; src = fetchurl { url = "https://dl.genymotion.com/releases/genymotion-${version}/genymotion-${version}-linux_x64.bin"; name = "genymotion-${version}-linux_x64.bin"; - sha256 = "0lvfdlpmmsyq2i9gs4mf6a8fxkfimdr4rhyihqnfhjij3fzxz4lk"; + sha256 = "sha256-yCczUfiMcuu9OauMDmMdtnheDBXiC9tOEu0cWAW95FM="; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/development/mobile/gomobile/default.nix b/pkgs/development/mobile/gomobile/default.nix index ce44b7dd9345..4087f1cca807 100644 --- a/pkgs/development/mobile/gomobile/default.nix +++ b/pkgs/development/mobile/gomobile/default.nix @@ -1,6 +1,7 @@ { stdenv, lib, fetchgit, buildGoModule, zlib, makeWrapper, xcodeenv, androidenv , xcodeWrapperArgs ? { } , xcodeWrapper ? xcodeenv.composeXcodeWrapper xcodeWrapperArgs +, withAndroidPkgs ? true , androidPkgs ? androidenv.composeAndroidPackages { includeNDK = true; ndkVersion = "22.1.7171670"; @@ -43,10 +44,12 @@ buildGoModule { mkdir -p $out/src/golang.org/x ln -s $src $out/src/golang.org/x/mobile wrapProgram $out/bin/gomobile \ - --prefix LD_LIBRARY_PATH : "${lib.makeLibraryPath [ zlib ]}" \ + '' + lib.optionalString withAndroidPkgs '' --prefix PATH : "${androidPkgs.androidsdk}/bin" \ --set ANDROID_NDK_HOME "${androidPkgs.androidsdk}/libexec/android-sdk/ndk-bundle" \ - --set ANDROID_HOME "${androidPkgs.androidsdk}/libexec/android-sdk" + --set ANDROID_HOME "${androidPkgs.androidsdk}/libexec/android-sdk" \ + '' + '' + --prefix LD_LIBRARY_PATH : "${lib.makeLibraryPath [ zlib ]}" ''; meta = with lib; { diff --git a/pkgs/development/mobile/imgpatchtools/default.nix b/pkgs/development/mobile/imgpatchtools/default.nix index c45e4973f564..2b746423cfe9 100644 --- a/pkgs/development/mobile/imgpatchtools/default.nix +++ b/pkgs/development/mobile/imgpatchtools/default.nix @@ -1,12 +1,14 @@ -{ lib, stdenv, fetchzip, bzip2, openssl, zlib }: +{ lib, stdenv, fetchFromGitHub, bzip2, openssl, zlib }: stdenv.mkDerivation rec { pname = "imgpatchtools"; version = "0.3"; - src = fetchzip { - url = "https://github.com/erfanoabdi/imgpatchtools/archive/${version}.tar.gz"; - sha256 = "1cwp1hfhip252dz0mbkhrsrkws6m15k359n4amw2vfnglnls8czd"; + src = fetchFromGitHub { + owner = "erfanoabdi"; + repo = "imgpatchtools"; + rev = version; + sha256 = "sha256-7TOkqaXPui14VcSmMmYJ1Wg+s85wrgp+E0XcCB0Ml7M="; }; buildInputs = [ bzip2 openssl zlib ]; diff --git a/pkgs/development/mobile/titaniumenv/titaniumsdk-7.5.nix b/pkgs/development/mobile/titaniumenv/titaniumsdk-7.5.nix index 89fd34bb5a3d..ea6ead43f0c0 100644 --- a/pkgs/development/mobile/titaniumenv/titaniumsdk-7.5.nix +++ b/pkgs/development/mobile/titaniumenv/titaniumsdk-7.5.nix @@ -15,23 +15,23 @@ let proguardVersion = "5.3.3"; proguardGradlePOM = fetchurl { - url = "https://repo1.maven.org/maven2/net/sf/proguard/proguard-gradle/${proguardVersion}/proguard-gradle-${proguardVersion}.pom"; + url = "mirror://maven/net/sf/proguard/proguard-gradle/${proguardVersion}/proguard-gradle-${proguardVersion}.pom"; sha256 = "03v9zm3ykfkyb5cs5ald07ph103fh68d5c33rv070r29p71dwszj"; }; proguardGradleJAR = fetchurl { - url = "https://repo1.maven.org/maven2/net/sf/proguard/proguard-gradle/${proguardVersion}/proguard-gradle-${proguardVersion}.jar"; + url = "mirror://maven/net/sf/proguard/proguard-gradle/${proguardVersion}/proguard-gradle-${proguardVersion}.jar"; sha256 = "0shhpsjfc5gam15jnv1hk718v5c7vi7dwdc3gvmnid6dc85kljzk"; }; proguardParentPOM = fetchurl { - url = "https://repo1.maven.org/maven2/net/sf/proguard/proguard-parent/${proguardVersion}/proguard-parent-${proguardVersion}.pom"; + url = "mirror://maven/net/sf/proguard/proguard-parent/${proguardVersion}/proguard-parent-${proguardVersion}.pom"; sha256 = "0mv0zbwyw8xa4mkc5kw69y5xqashkz9gp123akfvh9f6152l3202"; }; proguardBasePOM = fetchurl { - url = "https://repo1.maven.org/maven2/net/sf/proguard/proguard-base/${proguardVersion}/proguard-base-${proguardVersion}.pom"; + url = "mirror://maven/net/sf/proguard/proguard-base/${proguardVersion}/proguard-base-${proguardVersion}.pom"; sha256 = "1jnr6zsxfimb8wglqlwa6rrdc3g3nqf1dyw0k2dq9cj0q4pgn7p5"; }; proguardBaseJAR = fetchurl { - url = "https://repo1.maven.org/maven2/net/sf/proguard/proguard-base/${proguardVersion}/proguard-base-${proguardVersion}.jar"; + url = "mirror://maven/net/sf/proguard/proguard-base/${proguardVersion}/proguard-base-${proguardVersion}.jar"; sha256 = "11nwdb9y84cghcx319nsjjf9m035s4s1184zrhzpvaxq2wvqhbhx"; }; diff --git a/pkgs/development/mobile/titaniumenv/titaniumsdk-8.2.nix b/pkgs/development/mobile/titaniumenv/titaniumsdk-8.2.nix index fb462cc27fe6..7cb0390417fd 100644 --- a/pkgs/development/mobile/titaniumenv/titaniumsdk-8.2.nix +++ b/pkgs/development/mobile/titaniumenv/titaniumsdk-8.2.nix @@ -15,23 +15,23 @@ let proguardVersion = "5.3.3"; proguardGradlePOM = fetchurl { - url = "https://repo1.maven.org/maven2/net/sf/proguard/proguard-gradle/${proguardVersion}/proguard-gradle-${proguardVersion}.pom"; + url = "mirror://maven/net/sf/proguard/proguard-gradle/${proguardVersion}/proguard-gradle-${proguardVersion}.pom"; sha256 = "03v9zm3ykfkyb5cs5ald07ph103fh68d5c33rv070r29p71dwszj"; }; proguardGradleJAR = fetchurl { - url = "https://repo1.maven.org/maven2/net/sf/proguard/proguard-gradle/${proguardVersion}/proguard-gradle-${proguardVersion}.jar"; + url = "mirror://maven/net/sf/proguard/proguard-gradle/${proguardVersion}/proguard-gradle-${proguardVersion}.jar"; sha256 = "0shhpsjfc5gam15jnv1hk718v5c7vi7dwdc3gvmnid6dc85kljzk"; }; proguardParentPOM = fetchurl { - url = "https://repo1.maven.org/maven2/net/sf/proguard/proguard-parent/${proguardVersion}/proguard-parent-${proguardVersion}.pom"; + url = "mirror://maven/net/sf/proguard/proguard-parent/${proguardVersion}/proguard-parent-${proguardVersion}.pom"; sha256 = "0mv0zbwyw8xa4mkc5kw69y5xqashkz9gp123akfvh9f6152l3202"; }; proguardBasePOM = fetchurl { - url = "https://repo1.maven.org/maven2/net/sf/proguard/proguard-base/${proguardVersion}/proguard-base-${proguardVersion}.pom"; + url = "mirror://maven/net/sf/proguard/proguard-base/${proguardVersion}/proguard-base-${proguardVersion}.pom"; sha256 = "1jnr6zsxfimb8wglqlwa6rrdc3g3nqf1dyw0k2dq9cj0q4pgn7p5"; }; proguardBaseJAR = fetchurl { - url = "https://repo1.maven.org/maven2/net/sf/proguard/proguard-base/${proguardVersion}/proguard-base-${proguardVersion}.jar"; + url = "mirror://maven/net/sf/proguard/proguard-base/${proguardVersion}/proguard-base-${proguardVersion}.jar"; sha256 = "11nwdb9y84cghcx319nsjjf9m035s4s1184zrhzpvaxq2wvqhbhx"; }; diff --git a/pkgs/development/mobile/titaniumenv/titaniumsdk-8.3.nix b/pkgs/development/mobile/titaniumenv/titaniumsdk-8.3.nix index c207b112fae2..aef3e0c56e45 100644 --- a/pkgs/development/mobile/titaniumenv/titaniumsdk-8.3.nix +++ b/pkgs/development/mobile/titaniumenv/titaniumsdk-8.3.nix @@ -15,23 +15,23 @@ let proguardVersion = "5.3.3"; proguardGradlePOM = fetchurl { - url = "https://repo1.maven.org/maven2/net/sf/proguard/proguard-gradle/${proguardVersion}/proguard-gradle-${proguardVersion}.pom"; + url = "mirror://maven/net/sf/proguard/proguard-gradle/${proguardVersion}/proguard-gradle-${proguardVersion}.pom"; sha256 = "03v9zm3ykfkyb5cs5ald07ph103fh68d5c33rv070r29p71dwszj"; }; proguardGradleJAR = fetchurl { - url = "https://repo1.maven.org/maven2/net/sf/proguard/proguard-gradle/${proguardVersion}/proguard-gradle-${proguardVersion}.jar"; + url = "mirror://maven/net/sf/proguard/proguard-gradle/${proguardVersion}/proguard-gradle-${proguardVersion}.jar"; sha256 = "0shhpsjfc5gam15jnv1hk718v5c7vi7dwdc3gvmnid6dc85kljzk"; }; proguardParentPOM = fetchurl { - url = "https://repo1.maven.org/maven2/net/sf/proguard/proguard-parent/${proguardVersion}/proguard-parent-${proguardVersion}.pom"; + url = "mirror://maven/net/sf/proguard/proguard-parent/${proguardVersion}/proguard-parent-${proguardVersion}.pom"; sha256 = "0mv0zbwyw8xa4mkc5kw69y5xqashkz9gp123akfvh9f6152l3202"; }; proguardBasePOM = fetchurl { - url = "https://repo1.maven.org/maven2/net/sf/proguard/proguard-base/${proguardVersion}/proguard-base-${proguardVersion}.pom"; + url = "mirror://maven/net/sf/proguard/proguard-base/${proguardVersion}/proguard-base-${proguardVersion}.pom"; sha256 = "1jnr6zsxfimb8wglqlwa6rrdc3g3nqf1dyw0k2dq9cj0q4pgn7p5"; }; proguardBaseJAR = fetchurl { - url = "https://repo1.maven.org/maven2/net/sf/proguard/proguard-base/${proguardVersion}/proguard-base-${proguardVersion}.jar"; + url = "mirror://maven/net/sf/proguard/proguard-base/${proguardVersion}/proguard-base-${proguardVersion}.jar"; sha256 = "11nwdb9y84cghcx319nsjjf9m035s4s1184zrhzpvaxq2wvqhbhx"; }; diff --git a/pkgs/development/nim-packages/python/default.nix b/pkgs/development/nim-packages/python/default.nix new file mode 100644 index 000000000000..38002c15c939 --- /dev/null +++ b/pkgs/development/nim-packages/python/default.nix @@ -0,0 +1,25 @@ +{ lib, buildNimPackage, fetchFromGitHub, python27 }: + +buildNimPackage rec { + pname = "python"; + version = "1.2"; + src = fetchFromGitHub { + owner = "nim-lang"; + repo = pname; + rev = "b7c3b2c447a69fdb0a974ba149062e52182fda08"; + hash = "sha256-Wl4on0rf4zbNxmwmq/ZkNiPIFCZY+1BdokPQoba2EVI="; + }; + postPatch = let pythonLib = "${python27}/lib/libpython2.7.so"; + in '' + substituteInPlace src/python.nim \ + --replace 'items(LibNames)' "[\"${pythonLib}\"]" \ + --replace 'dynlib: dllname' 'dynlib: "${pythonLib}"' + ''; + doCheck = true; + meta = with lib; + src.meta // { + description = "Nim wrapper for the Python 2 programming language"; + license = [ licenses.mit ]; + maintainers = [ maintainers.ehmry ]; + }; +} diff --git a/pkgs/development/nim-packages/rocksdb/default.nix b/pkgs/development/nim-packages/rocksdb/default.nix new file mode 100644 index 000000000000..1ad32a086a05 --- /dev/null +++ b/pkgs/development/nim-packages/rocksdb/default.nix @@ -0,0 +1,20 @@ +{ lib, buildNimPackage, fetchFromGitHub, rocksdb, stew, tempfile }: + +buildNimPackage rec { + pname = "rocksdb"; + version = "0.2.0"; + src = fetchFromGitHub { + owner = "status-im"; + repo = "nim-${pname}"; + rev = "5b1307cb1f4c85bb72ff781d810fb8c0148b1183"; + hash = "sha256-gjMCB9kpWVi9Qv73/jhoAYw857OmQpry//bDQCtyJo0="; + }; + buildInputs = [ stew tempfile ]; + propagatedBuildInputs = [ rocksdb ]; + doCheck = false; + meta = with lib; + src.meta // { + description = "Nim wrapper for RocksDB"; + maintainers = [ maintainers.ehmry ]; + }; +} diff --git a/pkgs/development/nim-packages/snappy/config.patch b/pkgs/development/nim-packages/snappy/config.patch new file mode 100644 index 000000000000..ffcec7032ca9 --- /dev/null +++ b/pkgs/development/nim-packages/snappy/config.patch @@ -0,0 +1,7 @@ +diff --git a/tests/config.nims b/tests/config.nims +index 46348f1..fbe9f5e 100644 +--- a/tests/config.nims ++++ b/tests/config.nims +@@ -1 +1,2 @@ + switch("path", "..") ++switch("passL", "-lsnappy") diff --git a/pkgs/development/nim-packages/snappy/default.nix b/pkgs/development/nim-packages/snappy/default.nix new file mode 100644 index 000000000000..4e0282cd23cc --- /dev/null +++ b/pkgs/development/nim-packages/snappy/default.nix @@ -0,0 +1,25 @@ +{ lib, buildNimPackage, fetchFromGitHub, snappy }: + +buildNimPackage rec { + pname = "snappy"; + version = "0.1.0"; + src = fetchFromGitHub { + owner = "jangko"; + repo = pname; + rev = "d13e2ccb2acaa4e8dedce4f25e8dbf28e19278a6"; + hash = "sha256-18CFRuDK+E701MHrCixx22QSVmglTc0EJwrMCsKwayM="; + }; + propagatedBuildInputs = [ snappy ]; + patches = [ ./config.patch ]; + doCheck = true; + preCheck = '' + mkdir $NIX_BUILD_TOP/nimcache/ + mv -v tests/data $NIX_BUILD_TOP/nimcache/data + ''; # test standards, please + meta = with lib; + src.meta // { + description = "Nim implementation of snappy compression algorithm"; + license = [ lib.licenses.mit ]; + maintainers = [ maintainers.ehmry ]; + }; +} diff --git a/pkgs/development/nim-packages/spry/default.nix b/pkgs/development/nim-packages/spry/default.nix new file mode 100644 index 000000000000..497431be1e86 --- /dev/null +++ b/pkgs/development/nim-packages/spry/default.nix @@ -0,0 +1,23 @@ +{ lib, buildNimPackage, fetchFromGitHub, python, rocksdb, snappy, spryvm, stew +, tempfile, ui }: + +buildNimPackage rec { + pname = "spry"; + version = "0.9.0"; + src = fetchFromGitHub { + owner = "gokr"; + repo = pname; + rev = "098da7bb34a9113d5db5402fecfc76b1c3fa3b36"; + hash = "sha256-PfWBrG2Z16tLgcN8JYpHaNMysBbbYX812Lkgk0ItMwE="; + }; + buildInputs = [ python rocksdb snappy spryvm stew tempfile ui ]; + patches = [ ./nil.patch ]; + doCheck = true; + meta = with lib; + src.meta // { + description = + "A Smalltalk and Rebol inspired language implemented as an AST interpreter in Nim"; + license = [ licenses.mit ]; + maintainers = [ maintainers.ehmry ]; + }; +} diff --git a/pkgs/development/nim-packages/spry/nil.patch b/pkgs/development/nim-packages/spry/nil.patch new file mode 100644 index 000000000000..beea30357235 --- /dev/null +++ b/pkgs/development/nim-packages/spry/nil.patch @@ -0,0 +1,35 @@ +diff --git a/src/ispry.nim b/src/ispry.nim +index 23ad6c3..dc38a9d 100644 +--- a/src/ispry.nim ++++ b/src/ispry.nim +@@ -134,8 +134,8 @@ proc main() = + #discard spry.setBinding(newEvalWord("@"), result) + var output = $result + # Print any result +- if output.isNil: +- output = if suspended: "nil" else: "" ++ if output == "" and suspended: ++ output = "nil" + stdout.write(output & "\n") + # except: + # echo "Oops, sorry about that: " & getCurrentExceptionMsg() & "\n" +diff --git a/src/spry.nim b/src/spry.nim +index 670a280..d81bb4c 100644 +--- a/src/spry.nim ++++ b/src/spry.nim +@@ -87,13 +87,13 @@ for kind, key, val in getopt(): + of cmdEnd: assert(false) # cannot happen + + if eval: +- if filename == nil: ++ if filename == "": + writeHelp() + else: + code = filename + else: + code = +- if filename == nil: ++ if filename == "": + # no filename has been given, so we use stdin + readAll stdin + else: diff --git a/pkgs/development/nim-packages/spryvm/default.nix b/pkgs/development/nim-packages/spryvm/default.nix new file mode 100644 index 000000000000..7ee6537b3a2b --- /dev/null +++ b/pkgs/development/nim-packages/spryvm/default.nix @@ -0,0 +1,21 @@ +{ lib, buildNimPackage, fetchFromGitHub, sqlite }: + +buildNimPackage rec { + pname = "spryvm"; + version = "0.9.3"; + src = fetchFromGitHub { + owner = "gokr"; + repo = pname; + rev = "36c2b56bb194902d33de7bcf70d3041703e107ab"; + hash = "sha256-OxB49ef6qPvSXLsyVl5g2ic/P9MMbF3jRYDWrxNJ0Iw="; + }; + propagatedBuildInputs = [ sqlite ]; + patches = [ ./nil.patch ]; + doCheck = true; + meta = with lib; + src.meta // { + description = "Spry virtual machine"; + license = [ licenses.mit ]; + maintainers = [ maintainers.ehmry ]; + }; +} diff --git a/pkgs/development/nim-packages/spryvm/nil.patch b/pkgs/development/nim-packages/spryvm/nil.patch new file mode 100644 index 000000000000..82d42b597fdb --- /dev/null +++ b/pkgs/development/nim-packages/spryvm/nil.patch @@ -0,0 +1,21 @@ +diff --git a/spryvm/spryui.nim b/spryvm/spryui.nim +index 37f5329..50440e9 100644 +--- a/spryvm/spryui.nim ++++ b/spryvm/spryui.nim +@@ -140,14 +140,14 @@ proc addUI*(spry: Interpreter) = + nimMeth("openFile"): + var win = WindowNode(evalArgInfix(spry)) + var path = openFile(Window(win.widget)) +- if path.isNil: ++ if path == "": + spry.nilVal + else: + newValue($path) + nimMeth("saveFile"): + var win = WindowNode(evalArgInfix(spry)) + var path = saveFile(Window(win.widget)) +- if path.isNil: ++ if path == "": + spry.nilVal + else: + newValue($path) diff --git a/pkgs/development/nim-packages/stew/default.nix b/pkgs/development/nim-packages/stew/default.nix new file mode 100644 index 000000000000..d494e5f879ef --- /dev/null +++ b/pkgs/development/nim-packages/stew/default.nix @@ -0,0 +1,20 @@ +{ lib, buildNimPackage, fetchFromGitHub, snappy }: + +buildNimPackage rec { + pname = "stew"; + version = "0.1.0"; + src = fetchFromGitHub { + owner = "status-im"; + repo = "nim-${pname}"; + rev = "478cc6efdefaabadf0666a3351fb959b78009bcc"; + hash = "sha256-txlTF0zNV5kV4KfE744oB3aVLCfWS9BdoKxUmTQTTRY="; + }; + doCheck = false; + meta = with lib; + src.meta // { + description = + "Backports, standard library candidates and small utilities that don't yet deserve their own repository"; + license = [ lib.licenses.asl20 ]; + maintainers = [ maintainers.ehmry ]; + }; +} diff --git a/pkgs/development/nim-packages/tempfile/default.nix b/pkgs/development/nim-packages/tempfile/default.nix new file mode 100644 index 000000000000..2d151bad8e80 --- /dev/null +++ b/pkgs/development/nim-packages/tempfile/default.nix @@ -0,0 +1,19 @@ +{ lib, buildNimPackage, fetchFromGitHub }: + +buildNimPackage rec { + pname = "tempfile"; + version = "0.1.7"; + src = fetchFromGitHub { + owner = "OpenSystemsLab"; + repo = "${pname}.nim"; + rev = version; + hash = "sha256-08vvHXVxL1mAcpMzosaHd2FupTJrKJP5JaVcgxN4oYE="; + }; + doCheck = false; # impure + meta = with lib; + src.meta // { + description = "Temporary files and folders"; + license = [ lib.licenses.mit ]; + maintainers = [ maintainers.ehmry ]; + }; +} diff --git a/pkgs/development/nim-packages/ui/default.nix b/pkgs/development/nim-packages/ui/default.nix new file mode 100644 index 000000000000..de7ef09b5012 --- /dev/null +++ b/pkgs/development/nim-packages/ui/default.nix @@ -0,0 +1,24 @@ +{ lib, buildNimPackage, fetchFromGitHub, libui, pkg-config }: + +buildNimPackage rec { + pname = "ui"; + version = "0.9.4"; + src = fetchFromGitHub { + owner = "nim-lang"; + repo = pname; + rev = "547e1cea8e9fb68c138c422b77af0a3152e50210"; + hash = "sha256-rcvC0TO1r2zU7WEYfcsi/qX+nRITwKj7Fkqd4fHgTwU="; + }; + propagatedBuildInputs = [ libui ]; + propagatedNativeBuildInputs = [ pkg-config ]; + postPatch = '' + echo {.passL: r\"$(pkg-config --libs libui)\".} >> ui/rawui.nim + ''; + doCheck = true; + meta = with lib; + src.meta // { + description = "Nim bindings to libui"; + license = [ licenses.mit ]; + maintainers = [ maintainers.ehmry ]; + }; +} diff --git a/pkgs/development/node-packages/default.nix b/pkgs/development/node-packages/default.nix index 572db75dac28..4c72f1527aaf 100644 --- a/pkgs/development/node-packages/default.nix +++ b/pkgs/development/node-packages/default.nix @@ -302,24 +302,22 @@ let meta.mainProgram = "postcss"; }; - prisma = super.prisma.override { + prisma = super.prisma.override rec { nativeBuildInputs = [ pkgs.makeWrapper ]; - version = "3.2.0"; + version = "3.4.0"; src = fetchurl { - url = "https://registry.npmjs.org/prisma/-/prisma-3.2.0.tgz"; - sha512 = "sha512-o8+DH0RD5DbP8QTZej2dsY64yvjOwOG3TWOlJyoCHQ+8DH9m4tzxo38j6IF/PqpN4PmAGPpHuNi/nssG1cvYlQ=="; + url = "https://registry.npmjs.org/prisma/-/prisma-${version}.tgz"; + sha512 = "sha512-W0AFjVxPOLW5SEnf0ZwbOu4k8ElX98ioFC1E8Gb9Q/nuO2brEwxFJebXglfG+N6zphGbu2bG1I3VAu7aYzR3VA=="; }; - dependencies = [ - { - name = "_at_prisma_slash_engines"; - packageName = "@prisma/engines"; - version = "3.2.0-34.afdab2f10860244038c4e32458134112852d4dad"; - src = fetchurl { - url = "https://registry.npmjs.org/@prisma/engines/-/engines-3.2.0-34.afdab2f10860244038c4e32458134112852d4dad.tgz"; - sha512 = "sha512-MiZORXXsGORXTF9RqqKIlN/2ohkaxAWTsS7qxDJTy5ThTYLrXSmzxTSohM4qN/AI616B+o5WV7XTBhjlPKSufg=="; - }; - } - ]; + dependencies = [ rec { + name = "_at_prisma_slash_engines"; + packageName = "@prisma/engines"; + version = "3.4.0-27.1c9fdaa9e2319b814822d6dbfd0a69e1fcc13a85"; + src = fetchurl { + url = "https://registry.npmjs.org/@prisma/engines/-/engines-${version}.tgz"; + sha512 = "sha512-jyCjXhX1ZUbzA7+6Hm0iEdeY+qFfpD/RB7iSwMrMoIhkVYvnncSdCLBgbK0yqxTJR2nglevkDY2ve3QDxFciMA=="; + }; + }]; postInstall = with pkgs; '' wrapProgram "$out/bin/prisma" \ --set PRISMA_MIGRATION_ENGINE_BINARY ${prisma-engines}/bin/migration-engine \ diff --git a/pkgs/development/node-packages/node-packages.json b/pkgs/development/node-packages/node-packages.json index a503974d5fca..af67ffadf763 100644 --- a/pkgs/development/node-packages/node-packages.json +++ b/pkgs/development/node-packages/node-packages.json @@ -17,10 +17,12 @@ , "@webassemblyjs/wasm-strip" , "@webassemblyjs/wasm-text-gen" , "@webassemblyjs/wast-refmt" +, "alex" , "alloy" , "asar" , "autoprefixer" , "aws-azure-login" +, "awesome-lint" , "balanceofsatoshis" , "bash-language-server" , "beancount-langserver" @@ -79,6 +81,7 @@ , "code-theme-converter" , "coffee-script" , "coinmon" +, "concurrently" , "configurable-http-proxy" , "conventional-changelog-cli" , "cordova" @@ -86,6 +89,7 @@ , "create-cycle-app" , "create-react-app" , "create-react-native-app" +, "cspell" , "csslint" , "dat" , "degit" @@ -120,9 +124,11 @@ , "git-run" , "git-ssb" , "git-standup" +, "@gitbeaker/cli" , "gitmoji-cli" , "glob" , "graphql-cli" +, "graphqurl" , "grunt-cli" , "makam" , "meshcommander" @@ -146,7 +152,7 @@ , "insect" , "intelephense" , "ionic" -, {"iosevka": "https://github.com/be5invis/Iosevka/archive/v10.3.1.tar.gz"} +, {"iosevka": "https://github.com/be5invis/Iosevka/archive/v11.0.1.tar.gz"} , "jake" , "javascript-typescript-langserver" , "joplin" @@ -176,7 +182,9 @@ , {"lumo-build-deps": "../interpreters/clojurescript/lumo" } , "lua-fmt" , "madoko" +, "manta" , "markdownlint-cli" +, "markdownlint-cli2" , "markdown-link-check" , {"markdown-preview-nvim": "../../misc/vim-plugins/markdown-preview-nvim"} , "mastodon-bot" diff --git a/pkgs/development/node-packages/node-packages.nix b/pkgs/development/node-packages/node-packages.nix index 6eb75ba2eda3..d3ebbad6d341 100644 --- a/pkgs/development/node-packages/node-packages.nix +++ b/pkgs/development/node-packages/node-packages.nix @@ -49,13 +49,13 @@ let sha512 = "o/xdK8b4P0t/xpCARgWXAeaiWeh9jeua6bP1jrcbfN39+Z4zC4x2jg4NysHNhz6spRG8dJFH3kJIUoIbs0Ckww=="; }; }; - "@angular-devkit/architect-0.1202.12" = { + "@angular-devkit/architect-0.1300.2" = { name = "_at_angular-devkit_slash_architect"; packageName = "@angular-devkit/architect"; - version = "0.1202.12"; + version = "0.1300.2"; src = fetchurl { - url = "https://registry.npmjs.org/@angular-devkit/architect/-/architect-0.1202.12.tgz"; - sha512 = "md7F1chg8zwrmX2C2E2GoOaHhXp03+DmGph5CBTB6t8q3yB734I9A2bE5i0TyxCBLZzh8GOTH9nOGSGX6JlYrw=="; + url = "https://registry.npmjs.org/@angular-devkit/architect/-/architect-0.1300.2.tgz"; + sha512 = "cCTPFKZlR+Szt+X/l/eo4KBYnRba2NiCpFNPVsujitm7JqCXkjab7NDlf+2XMVD8vZl/kR1hfyF6O9ywYmhEFA=="; }; }; "@angular-devkit/core-12.2.10" = { @@ -67,13 +67,13 @@ let sha512 = "0qhmS7Qvl0hiRVTHxEC/ipFAfzYofPstw0ZITDpEMw+pgHlOZolOlnFrv8LyOXWNqlSIH5fS9D3WF7Hpm7ApYA=="; }; }; - "@angular-devkit/core-12.2.12" = { + "@angular-devkit/core-13.0.2" = { name = "_at_angular-devkit_slash_core"; packageName = "@angular-devkit/core"; - version = "12.2.12"; + version = "13.0.2"; src = fetchurl { - url = "https://registry.npmjs.org/@angular-devkit/core/-/core-12.2.12.tgz"; - sha512 = "ZFThmQecQmlniQl65rWn4oOMuWKy313O6Hk8sen7WdsjDircqtbHmtJCA1w/EU4xIilIJHo0Kez4Ihi00cGyYw=="; + url = "https://registry.npmjs.org/@angular-devkit/core/-/core-13.0.2.tgz"; + sha512 = "I4co4GH+iu0tns+UXfMtjJISO+cLpaUuiEH6kf0wF5cqjaIeluA9UjIRnxuNbdTW8iE2xVj/UWhQfHe/Ncp76w=="; }; }; "@angular-devkit/schematics-12.2.10" = { @@ -85,13 +85,13 @@ let sha512 = "oQ2EWdkEDE+eAttHeviXsvBi85PsntQT+IffjKUZdbQU+Leuk/pKUpTeea1YosU1p4Cz3PKYF+P/Nl5Jy3B7IQ=="; }; }; - "@angular-devkit/schematics-12.2.12" = { + "@angular-devkit/schematics-13.0.2" = { name = "_at_angular-devkit_slash_schematics"; packageName = "@angular-devkit/schematics"; - version = "12.2.12"; + version = "13.0.2"; src = fetchurl { - url = "https://registry.npmjs.org/@angular-devkit/schematics/-/schematics-12.2.12.tgz"; - sha512 = "Z5Z8HvIRoNEXMrfJgVZieSTZyD0TytRJscuW6xS83Aeqp5py9hvs5ytWhlpnTRz0ji8qc67csFKHvphDOqDduQ=="; + url = "https://registry.npmjs.org/@angular-devkit/schematics/-/schematics-13.0.2.tgz"; 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+ packageName = "@cspell/dict-lua"; + version = "1.0.16"; + src = fetchurl { + url = "https://registry.npmjs.org/@cspell/dict-lua/-/dict-lua-1.0.16.tgz"; + sha512 = "YiHDt8kmHJ8nSBy0tHzaxiuitYp+oJ66ffCYuFWTNB3//Y0SI4OGHU3omLsQVeXIfCeVrO4DrVvRDoCls9B5zQ=="; + }; + }; + "@cspell/dict-node-1.0.12" = { + name = "_at_cspell_slash_dict-node"; + packageName = "@cspell/dict-node"; + version = "1.0.12"; + src = fetchurl { + url = "https://registry.npmjs.org/@cspell/dict-node/-/dict-node-1.0.12.tgz"; + sha512 = "RPNn/7CSkflAWk0sbSoOkg0ORrgBARUjOW3QjB11KwV1gSu8f5W/ij/S50uIXtlrfoBLqd4OyE04jyON+g/Xfg=="; + }; + }; + "@cspell/dict-npm-1.0.16" = { + name = "_at_cspell_slash_dict-npm"; + packageName = "@cspell/dict-npm"; + version = "1.0.16"; + src = fetchurl { + url = "https://registry.npmjs.org/@cspell/dict-npm/-/dict-npm-1.0.16.tgz"; + sha512 = "RwkuZGcYBxL3Yux3cSG/IOWGlQ1e9HLCpHeyMtTVGYKAIkFAVUnGrz20l16/Q7zUG7IEktBz5O42kAozrEnqMQ=="; + }; + }; + "@cspell/dict-php-1.0.25" = { + name = "_at_cspell_slash_dict-php"; + packageName = "@cspell/dict-php"; + version = "1.0.25"; + src = fetchurl { + url = "https://registry.npmjs.org/@cspell/dict-php/-/dict-php-1.0.25.tgz"; + sha512 = "RoBIP5MRdByyPaXcznZMfOY1JdCMYPPLua5E9gkq0TJO7bX5mC9hyAKfYBSWVQunZydd82HZixjb5MPkDFU1uw=="; + }; + }; + "@cspell/dict-powershell-1.0.19" = { + name = "_at_cspell_slash_dict-powershell"; + packageName = "@cspell/dict-powershell"; + version = "1.0.19"; + src = fetchurl { + url = "https://registry.npmjs.org/@cspell/dict-powershell/-/dict-powershell-1.0.19.tgz"; + sha512 = "zF/raM/lkhXeHf4I43OtK0gP9rBeEJFArscTVwLWOCIvNk21MJcNoTYoaGw+c056+Q+hJL0psGLO7QN+mxYH1A=="; + }; + }; + "@cspell/dict-public-licenses-1.0.3" = { + name = "_at_cspell_slash_dict-public-licenses"; + packageName = "@cspell/dict-public-licenses"; + version = "1.0.3"; + src = fetchurl { + url = "https://registry.npmjs.org/@cspell/dict-public-licenses/-/dict-public-licenses-1.0.3.tgz"; + sha512 = "sXjxOHJ9Q4rZvE1UbwpwJQ8EXO3fadKBjJIWmz0z+dZAbvTrmz5Ln1Ef9ruJvLPfwAps8m3TCV6Diz60RAQqHg=="; + }; + }; + "@cspell/dict-python-2.0.4" = { + name = "_at_cspell_slash_dict-python"; + packageName = "@cspell/dict-python"; + version = "2.0.4"; + src = fetchurl { + url = "https://registry.npmjs.org/@cspell/dict-python/-/dict-python-2.0.4.tgz"; + sha512 = "71X/VnyFPm6OPEkqmoVXCJz28RvBgktxy6zF6D5TLt97LbWg2JyRrWSXaf2+seVoLnJQ5CHACxcs+jyEyLhBJA=="; + }; + }; + "@cspell/dict-ruby-1.0.14" = { + name = "_at_cspell_slash_dict-ruby"; + packageName = "@cspell/dict-ruby"; + version = "1.0.14"; + src = fetchurl { + url = "https://registry.npmjs.org/@cspell/dict-ruby/-/dict-ruby-1.0.14.tgz"; + sha512 = "XHBGN4U1y9rjRuqrCA+3yIm2TCdhwwHXpOEcWkNeyXm8K03yPnIrKFS+kap8GTTrLpfNDuFsrmkkQTa7ssXLRA=="; + }; + }; + "@cspell/dict-rust-1.0.23" = { + name = "_at_cspell_slash_dict-rust"; + packageName = "@cspell/dict-rust"; + version = "1.0.23"; + src = fetchurl { + url = "https://registry.npmjs.org/@cspell/dict-rust/-/dict-rust-1.0.23.tgz"; + sha512 = "lR4boDzs79YD6+30mmiSGAMMdwh7HTBAPUFSB0obR3Kidibfc3GZ+MHWZXay5dxZ4nBKM06vyjtanF9VJ8q1Iw=="; + }; + }; + "@cspell/dict-scala-1.0.21" = { + name = "_at_cspell_slash_dict-scala"; + packageName = "@cspell/dict-scala"; + version = "1.0.21"; + src = fetchurl { + url = "https://registry.npmjs.org/@cspell/dict-scala/-/dict-scala-1.0.21.tgz"; + sha512 = "5V/R7PRbbminTpPS3ywgdAalI9BHzcEjEj9ug4kWYvBIGwSnS7T6QCFCiu+e9LvEGUqQC+NHgLY4zs1NaBj2vA=="; + }; + }; + "@cspell/dict-software-terms-2.0.9" = { + name = "_at_cspell_slash_dict-software-terms"; + packageName = "@cspell/dict-software-terms"; + version = "2.0.9"; + src = fetchurl { + url = "https://registry.npmjs.org/@cspell/dict-software-terms/-/dict-software-terms-2.0.9.tgz"; + sha512 = "LhUmmJYD5Kzj04UgqPW7EvJ4eEVKkrPl4ki29ClwUg/uQNZh5JwcsxEMqh5+PHD7GggDqKPYcYZanytDELTZpg=="; + }; + }; + "@cspell/dict-swift-1.0.1" = { + name = "_at_cspell_slash_dict-swift"; + packageName = "@cspell/dict-swift"; + version = "1.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/@cspell/dict-swift/-/dict-swift-1.0.1.tgz"; + sha512 = "M4onLt10Ptld8Q1BwBit8BBYVZ0d2ZEiBTW1AXekIVPQkPKkwa/RkGlR0GESWNTC2Zbmt/qge7trksVdaYVWFQ=="; + }; + }; + "@cspell/dict-typescript-1.0.19" = { + name = "_at_cspell_slash_dict-typescript"; + packageName = "@cspell/dict-typescript"; + version = "1.0.19"; + src = fetchurl { + url = "https://registry.npmjs.org/@cspell/dict-typescript/-/dict-typescript-1.0.19.tgz"; + sha512 = "qmJApzoVskDeJnLZzZMaafEDGbEg5Elt4c3Mpg49SWzIHm1N4VXCp5CcFfHsOinJ30dGrs3ARAJGJZIw56kK6A=="; + }; + }; + "@cspell/dict-vue-2.0.1" = { + name = "_at_cspell_slash_dict-vue"; + packageName = "@cspell/dict-vue"; + version = "2.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/@cspell/dict-vue/-/dict-vue-2.0.1.tgz"; + sha512 = "n9So2C2Zw+uSDRzb2h9wq3PjZBqoHx+vBvu6a34H2qpumNjZ6HaEronrzX5tXJJXzOtocIQYrLxdd128TAU3+g=="; + }; + }; "@cycle/dom-18.3.0" = { name = "_at_cycle_slash_dom"; packageName = "@cycle/dom"; @@ -2155,13 +2506,13 @@ let sha512 = "J6KFFz5QCYUJq3pf0mjEcCJVERbzv71PUIDczuh9JkwGEzced6CO5ADLHB1rbf/+oPBtoPfMYNOpGDzCANlbXw=="; }; }; - "@eslint/eslintrc-1.0.3" = { + "@eslint/eslintrc-1.0.4" = { name = "_at_eslint_slash_eslintrc"; packageName = "@eslint/eslintrc"; - version = "1.0.3"; + version = "1.0.4"; src = fetchurl { - url = "https://registry.npmjs.org/@eslint/eslintrc/-/eslintrc-1.0.3.tgz"; - sha512 = "DHI1wDPoKCBPoLZA3qDR91+3te/wDSc1YhKg3jR8NxKKRJq2hwHwcWv31cSwSYvIBrmbENoYMWcenW8uproQqg=="; + url = "https://registry.npmjs.org/@eslint/eslintrc/-/eslintrc-1.0.4.tgz"; + sha512 = "h8Vx6MdxwWI2WM8/zREHMoqdgLNXEL4QX3MWSVMdyNJGvXVOs+6lp+m2hc3FnuMHDc4poxFNI20vCk0OmI4G0Q=="; }; }; "@exodus/schemasafe-1.0.0-rc.6" = { @@ -2191,22 +2542,22 @@ let sha512 = "Ydf4LidRB/EBI+YrB+cVLqIseiRfjUI/AeHBgjGMtq3GroraDu81OV7zqophRgupngoL3iS3JUMDMnxO7g39qA=="; }; }; - "@expo/config-6.0.6" = { + "@expo/config-6.0.7" = { name = "_at_expo_slash_config"; packageName = "@expo/config"; - version = "6.0.6"; + version = "6.0.7"; src = fetchurl { - url = "https://registry.npmjs.org/@expo/config/-/config-6.0.6.tgz"; - sha512 = "GPI8EIdMAtZ5VaB4p5GcfuX50xyfGFdpEqLi0QmcfrCfTsGry1/j/Qy28hovHM1oJYHlaZylTcbGy+1ET+AO2w=="; + url = "https://registry.npmjs.org/@expo/config/-/config-6.0.7.tgz"; + sha512 = "aOsm+ZSqCgQrDf+UPHM62QGIpNdt+D3NJSFdHECnTUS6vWiTXhdVS23VQ4ris2thQS0ZRKKlX90S8CBUU49fIg=="; }; }; - "@expo/config-plugins-4.0.6" = { + "@expo/config-plugins-4.0.7" = { name = "_at_expo_slash_config-plugins"; packageName = "@expo/config-plugins"; - version = "4.0.6"; + version = "4.0.7"; src = fetchurl { - url = "https://registry.npmjs.org/@expo/config-plugins/-/config-plugins-4.0.6.tgz"; - sha512 = "K/KQaw/CU8uLQgk7sFnZC54YGHoGucKFfdjYeZx5ds2eyzbuMAiKzGFcxZ/S+1dVBZ8QHzwowsVBW3kuYhnQ3Q=="; + url = "https://registry.npmjs.org/@expo/config-plugins/-/config-plugins-4.0.7.tgz"; + sha512 = "m160Y039LJcI8Q4arzA9edWNRPPnLnTe5tB41812Mn1BAmtoZy9OMs4Rj78OKFkMx6A9JJKUTWMnP/FVAbeMiw=="; }; }; "@expo/config-types-43.0.1" = { @@ -2218,22 +2569,22 @@ let sha512 = "EtllpCGDdB/UdwAIs5YXJwBLpbFQNdlLLrxIvoILA9cXrpQMWkeDCT9lQPJzFRMFcLUaMuGvkzX2tR4tx5EQFQ=="; }; }; - "@expo/dev-server-0.1.92" = { + "@expo/dev-server-0.1.94" = { name = "_at_expo_slash_dev-server"; packageName = "@expo/dev-server"; - version = "0.1.92"; + version = "0.1.94"; src = fetchurl { - url = "https://registry.npmjs.org/@expo/dev-server/-/dev-server-0.1.92.tgz"; - sha512 = "6XkNOQkfgW94r88mJQF5SHLgyttSKZaPQggLiSVG+sSWKjn1WCWvJjzvnyr9qw8DFOhxtI6S3mxH1iqVPU4QRQ=="; + url = "https://registry.npmjs.org/@expo/dev-server/-/dev-server-0.1.94.tgz"; + sha512 = "WHInk1uB/vNNGdtDxRqrkdYFhuLE4hADKgEgwNBSkcWBWnJIvdXtp/EWbh8zVWF8atvPrtM9JrBtMV3LVIf84g=="; }; }; - "@expo/dev-tools-0.13.127" = { + "@expo/dev-tools-0.13.129" = { name = "_at_expo_slash_dev-tools"; packageName = "@expo/dev-tools"; - version = "0.13.127"; + version = "0.13.129"; src = fetchurl { - url = "https://registry.npmjs.org/@expo/dev-tools/-/dev-tools-0.13.127.tgz"; - sha512 = "C9rYFUq2AgV7PoAwu4EvAA3Ryx8qh6ZD/SAHaZPUn1HBkNFFC2943gAtGSNn9ilZqDNt+E1SJNDdUJT9gaUtUg=="; + url = "https://registry.npmjs.org/@expo/dev-tools/-/dev-tools-0.13.129.tgz"; + sha512 = "4VLVxI05z65fbuNn5pi3cY+o/4e7Lnw6JmbtImVq/cknCGY0aCnWJWZB1KUZOvvpobI3zga/QAb/6poTtQy09w=="; }; }; "@expo/devcert-1.0.0" = { @@ -2263,13 +2614,13 @@ let sha512 = "CDnhjdirUs6OdN5hOSTJ2y3i9EiJMk7Z5iDljC5xyCHCrUex7oyI8vbRsZEojAahxZccgL/PrO+CjakiFFWurg=="; }; }; - "@expo/metro-config-0.2.7" = { + "@expo/metro-config-0.3.0" = { name = "_at_expo_slash_metro-config"; packageName = "@expo/metro-config"; - version = "0.2.7"; + version = "0.3.0"; src = fetchurl { - url = "https://registry.npmjs.org/@expo/metro-config/-/metro-config-0.2.7.tgz"; - sha512 = "V+qAqxyy3FjWv6GTB6dTdwNVjCXfnzkV0Dx5KNAUUZWwlBaZzCwfi5qdP77YMfZsaOwjM6yjSRb00iomEKn/gA=="; + url = "https://registry.npmjs.org/@expo/metro-config/-/metro-config-0.3.0.tgz"; + sha512 = "bwpxqrcziDuqLvSzJ18N/c3+VOVI03gZ4ZWZQ8N6s7OVJrRjUMcSlFzjKlrJNm1t9m44Xl5mzhJYGFK2WsdI+Q=="; }; }; "@expo/osascript-2.0.30" = { @@ -2299,13 +2650,13 @@ let sha512 = "LDxiS0KNZAGJu4fIJhbEKczmb+zeftl1NU0LE0tj0mozoMI5HSKdMUchgvnBm35bwBl8ekKkAfJJ0ONxljWQjQ=="; }; }; - "@expo/prebuild-config-3.0.6" = { + "@expo/prebuild-config-3.0.7" = { name = "_at_expo_slash_prebuild-config"; packageName = "@expo/prebuild-config"; - version = "3.0.6"; + version = "3.0.7"; src = fetchurl { - url = "https://registry.npmjs.org/@expo/prebuild-config/-/prebuild-config-3.0.6.tgz"; - sha512 = "KmPCi/Qhlx+jhmgDlMYNAhD64njDP3P9MWSKOl2YzpdDopk6+EGGBgI9Km6rQ1F3ESkqhuZN0uGYmABw6AoYYA=="; + url = "https://registry.npmjs.org/@expo/prebuild-config/-/prebuild-config-3.0.7.tgz"; + sha512 = "0lcgbqC5EP5f+SXu7jY0krLqqKfIbpp4LuDKJBpB7+ytM5W6VOURcCJA7BmwYD42kxsj9JOz/qjU1+OLr3g1qQ=="; }; }; "@expo/results-1.0.0" = { @@ -2353,22 +2704,22 @@ let sha512 = "LB7jWkqrHo+5fJHNrLAFdimuSXQ2MQ4lA7SQW5bf/HbsXuV2VrT/jN/M8f/KoWt0uJMGN4k/j7Opx4AvOOxSew=="; }; }; - "@expo/webpack-config-0.16.6" = { + "@expo/webpack-config-0.16.7" = { name = "_at_expo_slash_webpack-config"; packageName = "@expo/webpack-config"; - version = "0.16.6"; + version = "0.16.7"; src = fetchurl { - url = "https://registry.npmjs.org/@expo/webpack-config/-/webpack-config-0.16.6.tgz"; - sha512 = "xGovzj52z/rsF+cRD4iEqFykp9YYLDnF2l86XQemXxIB7L89owXI/zd4oi5X8kaLfJLPlTq/F8A4NaoztLxxjQ=="; + url = "https://registry.npmjs.org/@expo/webpack-config/-/webpack-config-0.16.7.tgz"; + sha512 = "/dph1dMDcxb7BJwUERD5LQLSjo16KWhephcjarH4T3dqRAFIR/RihFLI/suPM7dg4g7gFN9/qXYNpsZ75fvaxw=="; }; }; - "@expo/xcpretty-3.1.4" = { + "@expo/xcpretty-4.0.0" = { name = "_at_expo_slash_xcpretty"; packageName = "@expo/xcpretty"; - version = "3.1.4"; + version = "4.0.0"; src = fetchurl { - url = "https://registry.npmjs.org/@expo/xcpretty/-/xcpretty-3.1.4.tgz"; - sha512 = "zjZo89YkDW/C2wh10wAkAHYrdXwLdiMbKrGmADLJvz25yp7QpXgDR8KOaa1FUU/vYqmHZ6lshjrMMJpJWEqTRw=="; + url = "https://registry.npmjs.org/@expo/xcpretty/-/xcpretty-4.0.0.tgz"; + sha512 = "0yx68FKGm/spdmYgSFrx6p0NePzcXBPjX+VlBHssTPGEyhxnBGKNepyW+YP/tCVlb9++ApXe2u5wIdTK72h/1w=="; }; }; "@fast-csv/format-4.3.5" = { @@ -2416,13 +2767,13 @@ let sha512 = "iT1bU56rKrKEOfODoW6fScY11qj3iaYrZ+z11T6fo5+TDm84UGkkXjLXJTE57ZJzg0/gbccHQWYv+chY7bJN8Q=="; }; }; - "@fluentui/react-7.178.1" = { + "@fluentui/react-7.179.2" = { name = "_at_fluentui_slash_react"; packageName = "@fluentui/react"; - version = "7.178.1"; + version = "7.179.2"; src = fetchurl { - url = "https://registry.npmjs.org/@fluentui/react/-/react-7.178.1.tgz"; - sha512 = "2iwe0MUtQvenyBxktJ+KTOlM091QaBhu57rIbzYGHMyIH9948ZSC4F29XtEoLboaqWCPRJb8ZMW1eAooSQFVAg=="; + url = "https://registry.npmjs.org/@fluentui/react/-/react-7.179.2.tgz"; + sha512 = "II+ChNZC6Ds5JTk7rNWyErERdhgVvpvhk4GsUUvTnmZvnrtnmVQs4HGuq6J+EHDhfKSymlONcvNePACw5j/f+g=="; }; }; "@fluentui/react-focus-7.18.1" = { @@ -2461,6 +2812,33 @@ let sha512 = "82cpyJyKRoQoRi+14ibCeGPu0CwypgtBAdBhq1WfvagpCZNKqwXbKwXllYSMG91DhmG4jt9gN8eP6lGOtozuaw=="; }; }; + "@gitbeaker/core-34.5.0" = { + name = "_at_gitbeaker_slash_core"; + packageName = "@gitbeaker/core"; + version = "34.5.0"; + src = fetchurl { + url = "https://registry.npmjs.org/@gitbeaker/core/-/core-34.5.0.tgz"; + sha512 = "MfBwD3W79/nhmrwYyfw7R8FmVNS3CsoCulNfhySY38LT3w1GLMnDOIDTpELySTwoIWVXYT/QHdEPlGIG6nPXOg=="; + }; + }; + "@gitbeaker/node-34.5.0" = { + name = "_at_gitbeaker_slash_node"; + packageName = "@gitbeaker/node"; + version = "34.5.0"; + src = fetchurl { + url = "https://registry.npmjs.org/@gitbeaker/node/-/node-34.5.0.tgz"; + sha512 = "klm9PI7r6OpCmkS3Q26nPnVUwTb/VfF/IdOYv02/8SguEI3gMWfmR8PNvD99nsKN7lvL6ZoHl79gMGbgr65fHg=="; + }; + }; + "@gitbeaker/requester-utils-34.5.0" = { + name = "_at_gitbeaker_slash_requester-utils"; + packageName = "@gitbeaker/requester-utils"; + version = "34.5.0"; + src = fetchurl { + url = "https://registry.npmjs.org/@gitbeaker/requester-utils/-/requester-utils-34.5.0.tgz"; + sha512 = "fgMGE/A5sOLjuhRPRCyiwLOCBqbhlDpVjo6nooizyQcOH5K4c4EZNgGD5AQshg6U5r3xdLNCKHYFu36pbR91uQ=="; + }; + }; "@google-cloud/paginator-3.0.6" = { name = "_at_google-cloud_slash_paginator"; packageName = "@google-cloud/paginator"; @@ -2497,13 +2875,13 @@ let sha512 = "j8yRSSqswWi1QqUGKVEKOG03Q7qOoZP6/h2zN2YO+F5h2+DHU0bSrHCK9Y7lo2DI9fBd8qGAw795sf+3Jva4yA=="; }; }; - "@google-cloud/pubsub-2.18.1" = { + "@google-cloud/pubsub-2.18.2" = { name = "_at_google-cloud_slash_pubsub"; packageName = "@google-cloud/pubsub"; - version = "2.18.1"; + version = "2.18.2"; src = fetchurl { - url = "https://registry.npmjs.org/@google-cloud/pubsub/-/pubsub-2.18.1.tgz"; - sha512 = "L2ejjRPszBybsRXJMLHN19UimpchNLNrtE7hJtoZxcy4fhITQGIDk1Ba4LceJYgSMJGA/YatZMYNavgyYpxhvA=="; + url = "https://registry.npmjs.org/@google-cloud/pubsub/-/pubsub-2.18.2.tgz"; + sha512 = "wEJQNlsMuGNPq72r2D7CRRrYV0Q7tIVMpJjU3PT7z1fmuLZbjfNZJl38uT3scsmqTf9pu9jNcAiWtQv6qCSq4g=="; }; }; "@graphql-cli/common-4.1.0" = { @@ -2551,13 +2929,13 @@ let sha512 = "5k2SNz0W87tDcymhEMZMkd6/vs6QawDyjQXWtqkuLTBF3vxjxPD1I4dwHoxgWPIjjANhXybvulD7E+St/7s9TQ=="; }; }; - "@graphql-tools/import-6.5.8" = { + "@graphql-tools/import-6.6.1" = { name = "_at_graphql-tools_slash_import"; packageName = "@graphql-tools/import"; - version = "6.5.8"; + version = "6.6.1"; src = fetchurl { - url = "https://registry.npmjs.org/@graphql-tools/import/-/import-6.5.8.tgz"; - sha512 = "G0/PRf7tY3FZ8QzCeI+XH+CMye1Gd5JHw1G8RvhELxKG0l94xMAih/y7n8FgYp1Q2NgjsY2hFhUpdqgvF/WU3w=="; + url = "https://registry.npmjs.org/@graphql-tools/import/-/import-6.6.1.tgz"; + sha512 = "i9WA6k+erJMci822o9w9DoX+uncVBK60LGGYW8mdbhX0l7wEubUpA000thJ1aarCusYh0u+ZT9qX0HyVPXu25Q=="; }; }; "@graphql-tools/json-file-loader-6.2.6" = { @@ -2605,13 +2983,13 @@ let sha512 = "Q240kcUszhXiAYudjuJgNuLgy9CryDP3wp83NOZQezfA6h3ByYKU7xI6DiKrdjyVaGpYN3ppUmdj0uf5GaXzMA=="; }; }; - "@graphql-tools/mock-8.4.2" = { + "@graphql-tools/mock-8.4.3" = { name = "_at_graphql-tools_slash_mock"; packageName = "@graphql-tools/mock"; - version = "8.4.2"; + version = "8.4.3"; src = fetchurl { - url = "https://registry.npmjs.org/@graphql-tools/mock/-/mock-8.4.2.tgz"; - sha512 = "2v4v99mWUB1by+6Bk01PoJCUVnYoNSOT0E5VvFRf5oMwJPaRKLAbC+IjZaRoen1tWpVrg+3Coub7co8jyhvm/Q=="; + url = "https://registry.npmjs.org/@graphql-tools/mock/-/mock-8.4.3.tgz"; + sha512 = "jj7obzDz4FAfmIGSh1Mo6cUs9d8MSaN6TH/iju3Qyuz6CZ6NLuJrWOg50ysEUgkT4Y/Aey8SlWOf/U15Z7qWYw=="; }; }; "@graphql-tools/schema-7.1.5" = { @@ -2668,13 +3046,13 @@ let sha512 = "gzkavMOgbhnwkHJYg32Adv6f+LxjbQmmbdD5Hty0+CWxvaiuJq+nU6tzb/7VSU4cwhbNLx/lGu2jbCPEW1McZQ=="; }; }; - "@graphql-tools/utils-8.5.2" = { + "@graphql-tools/utils-8.5.3" = { name = "_at_graphql-tools_slash_utils"; packageName = "@graphql-tools/utils"; - version = "8.5.2"; + version = "8.5.3"; src = fetchurl { - url = "https://registry.npmjs.org/@graphql-tools/utils/-/utils-8.5.2.tgz"; - sha512 = "wxA51td/759nQziPYh+HxE0WbURRufrp1lwfOYMgfK4e8Aa6gCa1P1p6ERogUIm423NrIfOVau19Q/BBpHdolw=="; + url = "https://registry.npmjs.org/@graphql-tools/utils/-/utils-8.5.3.tgz"; + sha512 = "HDNGWFVa8QQkoQB0H1lftvaO1X5xUaUDk1zr1qDe0xN1NL0E/CrQdJ5UKLqOvH4hkqVUPxQsyOoAZFkaH6rLHg=="; }; }; "@graphql-tools/wrap-7.0.8" = { @@ -2713,6 +3091,15 @@ let sha512 = "aUN6oGk9un8rfYWz73nQgFxPCYJQYd8LpIGguZHBsNduBMyqG6EWANrsVBuTG+nl/l4dKb3x+qi1l9+oxDxqGg=="; }; }; + "@grpc/grpc-js-1.4.4" = { + name = "_at_grpc_slash_grpc-js"; + packageName = "@grpc/grpc-js"; + version = "1.4.4"; + src = fetchurl { + url = "https://registry.npmjs.org/@grpc/grpc-js/-/grpc-js-1.4.4.tgz"; + sha512 = "a6222b7Dl6fIlMgzVl7e+NiRoLiZFbpcwvBH2Oli56Bn7W4/3Ld+86hK4ffPn5rx2DlDidmIcvIJiOQXyhv9gA=="; + }; + }; "@grpc/proto-loader-0.6.4" = { name = "_at_grpc_slash_proto-loader"; packageName = "@grpc/proto-loader"; @@ -3127,58 +3514,58 @@ let sha512 = "fC6QCp7Sc5sX6g8Tvbmj4XUTbyrik0akgRy03yjXbQaBWWNWGE7SGtJk98m0N8nzegD/7SggrUlivxo5ax4KWQ=="; }; }; - "@joplin/fork-htmlparser2-4.1.36" = { + "@joplin/fork-htmlparser2-4.1.38" = { name = "_at_joplin_slash_fork-htmlparser2"; packageName = "@joplin/fork-htmlparser2"; - version = "4.1.36"; + version = "4.1.38"; src = fetchurl { - url = "https://registry.npmjs.org/@joplin/fork-htmlparser2/-/fork-htmlparser2-4.1.36.tgz"; - sha512 = "utKsPcJpU4dKQqdp7NfcCex3eTln7QHB90xJKNUOpCsfHsMjJ8qMdHEb6N3/iD+wjD16ZYaPoF7FfBWur2Ascg=="; + url = "https://registry.npmjs.org/@joplin/fork-htmlparser2/-/fork-htmlparser2-4.1.38.tgz"; + sha512 = "DAv/fkv+tR0HFu6g8hNn2b/g2ZOBxGU8wuj2WScc598VOQXVKFfOAqZ+phZ1apTxpk1X0Z/HwmyTyzuS76QgYA=="; }; }; - "@joplin/fork-sax-1.2.40" = { + "@joplin/fork-sax-1.2.42" = { name = "_at_joplin_slash_fork-sax"; packageName = "@joplin/fork-sax"; 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packageName = "@joplin/renderer"; - version = "2.4.3"; + version = "2.6.2"; src = fetchurl { - url = "https://registry.npmjs.org/@joplin/renderer/-/renderer-2.4.3.tgz"; - sha512 = "dxoDjBJwmzAyGBf2G2I/rGMK6MljTFB7OHxl6lAE5sIZ+xTPN8nKOCr9b5zJVde6G7DA9RsnfFdG51S5BGtPRA=="; + url = "https://registry.npmjs.org/@joplin/renderer/-/renderer-2.6.2.tgz"; + sha512 = "3Dv6s8hb4hj9UZwa6BJotZijz/EQtEQftqcP5S8xHkL+YNRH+bkCOSof8s1p98nH3l/6Z9GTv99APoA1fp5sDA=="; }; }; - "@joplin/turndown-4.0.58" = { + "@joplin/turndown-4.0.60" = { name = "_at_joplin_slash_turndown"; packageName = "@joplin/turndown"; - version = "4.0.58"; + version = "4.0.60"; src = fetchurl { - url = "https://registry.npmjs.org/@joplin/turndown/-/turndown-4.0.58.tgz"; - sha512 = "4WUJTU3wt0PgiN+ezqz5tHf9EHNGZ5d1Hc6Oe33A2hgpYweKBQ8YMJ3CS3AEWjy2tM3HvwBwqhe7JurVJNsxWQ=="; + url = "https://registry.npmjs.org/@joplin/turndown/-/turndown-4.0.60.tgz"; + sha512 = "o7HCjVnai5kFIrRPfjIgixZrgNCGL9qYBK4p0v3S5b6gMz2Xt6NPkvlz09bTv7Ix3uJFJsRr4A6G6gVKZKt0ow=="; }; }; - "@joplin/turndown-plugin-gfm-1.0.40" = { + "@joplin/turndown-plugin-gfm-1.0.42" = { name = "_at_joplin_slash_turndown-plugin-gfm"; packageName = "@joplin/turndown-plugin-gfm"; - version = "1.0.40"; + version = "1.0.42"; src = fetchurl { - url = "https://registry.npmjs.org/@joplin/turndown-plugin-gfm/-/turndown-plugin-gfm-1.0.40.tgz"; - sha512 = "AhaCa3/tz6ceHnt5+NiJ0x77F3+FKpexIyeGMItrZV1qtHovIv1ntxEXzrl5RryHQD8/NK1uf3KbZPEasbDKTA=="; + url = "https://registry.npmjs.org/@joplin/turndown-plugin-gfm/-/turndown-plugin-gfm-1.0.42.tgz"; + sha512 = "8vYIdyKuQAkG8ANyHwOwxabQAj1IqTjs8MK9z8qXFpUyy/3b7sKd/oOALL+cnOnc63YcLWLz1JB9jGYAmkUKhg=="; }; }; "@josephg/resolvable-1.0.1" = { @@ -3208,22 +3595,22 @@ let sha512 = "s0jhnq/1X1IQQpKcAoUAd3KZ6X58nEjIi+vL4aC0iyDW6v2pmt8J5G/ilUZSbvplyJ2GdTMYi7NOCz2f3QAGZA=="; }; }; - "@jsii/check-node-1.42.0" = { + "@jsii/check-node-1.43.0" = { name = "_at_jsii_slash_check-node"; packageName = "@jsii/check-node"; - version = "1.42.0"; + version = "1.43.0"; src = fetchurl { - url = "https://registry.npmjs.org/@jsii/check-node/-/check-node-1.42.0.tgz"; - sha512 = "URX4s0iOmuxbERL2rO10JlwedYbAT/3vM2HqswgjtJUbZTFgHsmg+Tzh3JglJzKuCg8Xm4m6CP4UlFMPqPRcqA=="; + url = "https://registry.npmjs.org/@jsii/check-node/-/check-node-1.43.0.tgz"; + sha512 = "9+bZhSZB5Mz4yQb0y+sJTbFugtUmVyEaRNRoaptc31w8xERiOXr1SJNQe3JCOckArf5KfeeGHVbXB9ZMBcBSkg=="; }; }; - "@jsii/spec-1.42.0" = { + "@jsii/spec-1.43.0" = { name = "_at_jsii_slash_spec"; packageName = "@jsii/spec"; - version = "1.42.0"; + version = "1.43.0"; src = fetchurl { - url = "https://registry.npmjs.org/@jsii/spec/-/spec-1.42.0.tgz"; - sha512 = "SS2Q1Ds/yiTejd/0KO5lC6SUGqlfjuqZ6nAxJxLU76JQ99v1spRJeS7oi/2OW+ZmTEwBy81DgjOxA8bwUc0U/Q=="; + url = "https://registry.npmjs.org/@jsii/spec/-/spec-1.43.0.tgz"; + sha512 = "4FZmzdBdVO64VEq1dQ6vXvBIWWHnUjP8bz7jAIjwSTE6iyJnSz2XT32tJpNg57RpBHRDdUuZGCgYa+xl06iGcA=="; }; }; "@kwsites/file-exists-1.1.1" = { @@ -4126,13 +4513,13 @@ let sha512 = "W6CLUJ2eBMw3Rec70qrsEW0jOm/3twwJv21mrmj2yORiaVmVYGS4sSS5yUwvQc1ZlDLYGPnClVWmUUMagKNsfA=="; }; }; - "@microsoft/load-themed-styles-1.10.228" = { + "@microsoft/load-themed-styles-1.10.230" = { name = "_at_microsoft_slash_load-themed-styles"; packageName = "@microsoft/load-themed-styles"; - version = "1.10.228"; + version = "1.10.230"; src = fetchurl { - url = "https://registry.npmjs.org/@microsoft/load-themed-styles/-/load-themed-styles-1.10.228.tgz"; - sha512 = "QONiqQphejq/x+Rp+uoSOE8lPLkhKBBNa0SVGldtVwNOb+27W1cQXlrtSuIW6bupadkDMTOt/3yWwqFJvU8Nnw=="; + url = "https://registry.npmjs.org/@microsoft/load-themed-styles/-/load-themed-styles-1.10.230.tgz"; + sha512 = "EMc7AqUZxRnZTpnPasItHN5DXV/EdJ19wHyOls69PF089Ny9pUxZEbAPROOuR6I1m8WvNRJrlagLJgG9Yq0Y2w=="; }; }; "@mitmaro/errors-1.0.0" = { @@ -4297,13 +4684,13 @@ let sha512 = "oGB+UxlgWcgQkgwo8GcEGwemoTFt3FIO9ababBmaGwXIoBKZ+GTy0pP185beGg7Llih/NSHSV2XAs1lnznocSg=="; }; }; - "@npmcli/arborist-2.10.0" = { + "@npmcli/arborist-4.0.4" = { name = "_at_npmcli_slash_arborist"; packageName = "@npmcli/arborist"; - version = "2.10.0"; + version = "4.0.4"; src = fetchurl { - url = "https://registry.npmjs.org/@npmcli/arborist/-/arborist-2.10.0.tgz"; - sha512 = "CLnD+zXG9oijEEzViimz8fbOoFVb7hoypiaf7p6giJhvYtrxLAyY3cZAMPIFQvsG731+02eMDp3LqVBNo7BaZA=="; + url = "https://registry.npmjs.org/@npmcli/arborist/-/arborist-4.0.4.tgz"; + sha512 = "5hRkiHF9zu62z6a7CJqhVG5CFUVnbYqvrrcxxEmhxFgyH2ovICyULOrj7nF4VBlfzp7OPu/rveV2ts9iYrn74g=="; }; }; "@npmcli/ci-detect-1.4.0" = { @@ -4342,22 +4729,22 @@ let sha512 = "9rufe0wnJusCQoLpV9ZPKIVP55itrM5BxOXs10DmdbRfgWtHy1LDyskbwRnBghuB0PrF7pNPOqREVtpz4HqzKw=="; }; }; - "@npmcli/map-workspaces-1.0.4" = { + "@npmcli/map-workspaces-2.0.0" = { name = "_at_npmcli_slash_map-workspaces"; packageName = "@npmcli/map-workspaces"; - version = "1.0.4"; + version = "2.0.0"; src = fetchurl { - url = "https://registry.npmjs.org/@npmcli/map-workspaces/-/map-workspaces-1.0.4.tgz"; - sha512 = "wVR8QxhyXsFcD/cORtJwGQodeeaDf0OxcHie8ema4VgFeqwYkFsDPnSrIRSytX8xR6nKPAH89WnwTcaU608b/Q=="; + url = "https://registry.npmjs.org/@npmcli/map-workspaces/-/map-workspaces-2.0.0.tgz"; 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+ version = "2.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/@npmcli/run-script/-/run-script-2.0.0.tgz"; + sha512 = "fSan/Pu11xS/TdaTpTB0MRn9guwGU8dye+x56mEVgBEd/QsybBbYcAL0phPXi8SGWFEChkQd6M9qL4y6VOpFig=="; + }; + }; "@oclif/command-1.8.0" = { name = "_at_oclif_slash_command"; packageName = "@oclif/command"; @@ -4441,6 +4837,15 @@ let sha512 = "zEYbpxSQr80t7MkLMHOmZr8QCrCIbVrI7fLSZWlsvD2AEM0vvzuhWymjo9/kHy2/kNfxwu7NTI4i2a0zoHu11w=="; }; }; + "@oclif/errors-1.3.4" = { + name = "_at_oclif_slash_errors"; + packageName = "@oclif/errors"; + version = "1.3.4"; + src = fetchurl { + url = "https://registry.npmjs.org/@oclif/errors/-/errors-1.3.4.tgz"; + sha512 = "pJKXyEqwdfRTUdM8n5FIHiQQHg5ETM0Wlso8bF9GodczO40mF5Z3HufnYWJE7z8sGKxOeJCdbAVZbS8Y+d5GCw=="; + }; + }; "@oclif/errors-1.3.5" = { name = "_at_oclif_slash_errors"; packageName = "@oclif/errors"; @@ -4486,6 +4891,15 @@ let sha512 = "tuzhvxxRtfLnWa96klngXBi5IwHt9S/twedCbQhl9dYIKTFMHI1BcOQcPra6ylct+M+b9jhEF5sjWLv78tB6tw=="; }; }; + "@oclif/plugin-help-3.2.1" = { + name = "_at_oclif_slash_plugin-help"; + packageName = "@oclif/plugin-help"; + version = "3.2.1"; + src = fetchurl { + url = "https://registry.npmjs.org/@oclif/plugin-help/-/plugin-help-3.2.1.tgz"; + sha512 = "vq7rn16TrQmjX3Al/k1Z5iBZWZ3HE8fDXs52OmDJmmTqryPSNvURH9WCAsqr0PODYCSR17Hy1VTzS0x7vVVLEQ=="; + }; + }; "@oclif/plugin-help-3.3.0" = { name = "_at_oclif_slash_plugin-help"; packageName = "@oclif/plugin-help"; @@ -5089,13 +5503,13 @@ let sha512 = "I/gRlM2meKPKXFN/1fxLoigPXvAUsivxRCih7vgeO7o4qrNNsl6Ah85l3UBbFi0t7ttjMde2+bS1A32a1Hu0BA=="; }; }; - "@prisma/engines-3.4.0-27.1c9fdaa9e2319b814822d6dbfd0a69e1fcc13a85" = { + "@prisma/engines-3.4.1-2.57771c0558568c7d08bd34c7248af5244ae16bd9" = { name = "_at_prisma_slash_engines"; packageName = "@prisma/engines"; - version = "3.4.0-27.1c9fdaa9e2319b814822d6dbfd0a69e1fcc13a85"; + version = "3.4.1-2.57771c0558568c7d08bd34c7248af5244ae16bd9"; src = fetchurl { - url = "https://registry.npmjs.org/@prisma/engines/-/engines-3.4.0-27.1c9fdaa9e2319b814822d6dbfd0a69e1fcc13a85.tgz"; 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}; }; "@segment/loosely-validate-event-2.0.0" = { @@ -5332,13 +5746,13 @@ let sha512 = "lOUyRopNTKJYVEU9T6stp2irwlTDsYMmUKBOUjnMcwGveuUfIJqrCOtFLtIPPj3XJlbZy5F68l4KP9rZ8Ipang=="; }; }; - "@serverless/components-3.17.1" = { + "@serverless/components-3.18.0" = { name = "_at_serverless_slash_components"; packageName = "@serverless/components"; - version = "3.17.1"; + version = "3.18.0"; src = fetchurl { - url = "https://registry.npmjs.org/@serverless/components/-/components-3.17.1.tgz"; - sha512 = "Ra0VVpivEWB816ZAca4UCNzOxQqxveEp4h+RzUX5vaAsZrxpotPUFZi96w9yZGQk3OTxxscRqrsBLxGDtOu8SA=="; + url = "https://registry.npmjs.org/@serverless/components/-/components-3.18.0.tgz"; + sha512 = "/mg+A9HACedGD3qJ0MxepmmBwFi3hwUYFNEDJi7Z63pkHvXg+jLEeHtbAx2HdqxY1SHH/LtRzZR4GBcFCaY+Og=="; }; }; "@serverless/core-1.1.2" = { @@ -5350,13 +5764,13 @@ let sha512 = "PY7gH+7aQ+MltcUD7SRDuQODJ9Sav9HhFJsgOiyf8IVo7XVD6FxZIsSnpMI6paSkptOB7n+0Jz03gNlEkKetQQ=="; }; }; - "@serverless/dashboard-plugin-5.5.0" = { + "@serverless/dashboard-plugin-5.5.1" = { name = "_at_serverless_slash_dashboard-plugin"; packageName = "@serverless/dashboard-plugin"; - version = "5.5.0"; + version = "5.5.1"; src = fetchurl { - url = "https://registry.npmjs.org/@serverless/dashboard-plugin/-/dashboard-plugin-5.5.0.tgz"; - sha512 = "a3vWcAacJrUeUFcGXhm/tDxvZjqQI1KjRjFGrqbxoN0N5fCdkLtOn6578Iq4hdP8BF2XanS1xGGdhPjcYBdsUA=="; + url = "https://registry.npmjs.org/@serverless/dashboard-plugin/-/dashboard-plugin-5.5.1.tgz"; + sha512 = "gXn17AOyY3fxSq2nIFNnU4tZorplh2yVb0zI9A+rTeHlQ3HgIJa7xs/rR2hLEcW4vT26zX8dqwdJOAml/9kZyw=="; }; }; "@serverless/event-mocks-1.1.1" = { @@ -5377,13 +5791,13 @@ let sha512 = "q2CMqCkKeBaKA/UwfJAZLkdUsbghSbiYPvAX4rl9rsR5APm4KWtjKQP9CTOtVO5JRMWYoysK6jF0d5VJOABRzQ=="; }; }; - "@serverless/platform-client-china-2.3.1" = { + "@serverless/platform-client-china-2.3.2" = { name = "_at_serverless_slash_platform-client-china"; packageName = "@serverless/platform-client-china"; - version = "2.3.1"; + version = "2.3.2"; src = fetchurl { - url = "https://registry.npmjs.org/@serverless/platform-client-china/-/platform-client-china-2.3.1.tgz"; 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}; }; "@serverless/utils-china-1.1.4" = { @@ -6151,6 +6565,15 @@ let sha512 = "SRXjM+tfsSlA9VuG8hGO2nft2p8zjXCK1VcC6N4NXbBbYbSia9kzCChYQajIjzIqOOOuh5Ock6MmV2oux4jDZQ=="; }; }; + "@types/concat-stream-1.6.1" = { + name = "_at_types_slash_concat-stream"; + packageName = "@types/concat-stream"; + version = "1.6.1"; + src = fetchurl { + url = "https://registry.npmjs.org/@types/concat-stream/-/concat-stream-1.6.1.tgz"; + sha512 = "eHE4cQPoj6ngxBZMvVf6Hw7Mh4jMW4U9lpGmS5GBPB9RYxlFg+CHaVN7ErNY4W9XfLIEn20b4VDYaIrbq0q4uA=="; + }; + }; "@types/connect-3.4.35" = { name = "_at_types_slash_connect"; packageName = "@types/connect"; @@ -6367,6 +6790,15 @@ let sha512 = "3UJuW+Qxhzwjq3xhwXm2onQcFHn76frIYVbTu+kn24LFxI+dEhdfISDFovPB8VpEgW8oQCTpRuCe+0zJxB7NEA=="; }; }; + "@types/express-serve-static-core-4.17.25" = { + name = "_at_types_slash_express-serve-static-core"; + packageName = "@types/express-serve-static-core"; + version = "4.17.25"; + src = fetchurl { + url = "https://registry.npmjs.org/@types/express-serve-static-core/-/express-serve-static-core-4.17.25.tgz"; + sha512 = "OUJIVfRMFijZukGGwTpKNFprqCCXk5WjNGvUgB/CxxBR40QWSjsNK86+yvGKlCOGc7sbwfHLaXhkG+NsytwBaQ=="; + }; + }; "@types/fancy-log-1.3.0" = { name = "_at_types_slash_fancy-log"; packageName = "@types/fancy-log"; @@ -6502,6 +6934,15 @@ let sha512 = "rjaYQ9b9y/VFGOpqBEXRavc3jh0a+e6evAbI31tMda8VlPaSy0AZJfXsvmIe3wklc7W6C3zCSfleuMXR7NOyXw=="; }; }; + "@types/is-empty-1.2.1" = { + name = "_at_types_slash_is-empty"; + packageName = "@types/is-empty"; + version = "1.2.1"; + src = fetchurl { + url = "https://registry.npmjs.org/@types/is-empty/-/is-empty-1.2.1.tgz"; + sha512 = "a3xgqnFTuNJDm1fjsTjHocYJ40Cz3t8utYpi5GNaxzrJC2HSD08ym+whIL7fNqiqBCdM9bcqD1H/tORWAFXoZw=="; + }; + }; "@types/istanbul-lib-coverage-2.0.3" = { name = "_at_types_slash_istanbul-lib-coverage"; packageName = "@types/istanbul-lib-coverage"; @@ -6565,6 +7006,15 @@ let sha512 = "S6+8JAYTE1qdsc9HMVsfY7+SgSuUU/Tp6TYTmITW0PZxiyIMvol3Gy//y69Wkhs0ti4py5qgR3uZH6uz/DNzJQ=="; }; }; + "@types/js-yaml-4.0.4" = { + name = "_at_types_slash_js-yaml"; + packageName = "@types/js-yaml"; + version = "4.0.4"; + src = fetchurl { + url = "https://registry.npmjs.org/@types/js-yaml/-/js-yaml-4.0.4.tgz"; + sha512 = "AuHubXUmg0AzkXH0Mx6sIxeY/1C110mm/EkE/gB1sTRz3h2dao2W/63q42SlVST+lICxz5Oki2hzYA6+KnnieQ=="; + }; + }; "@types/jscodeshift-0.7.2" = { name = "_at_types_slash_jscodeshift"; packageName = "@types/jscodeshift"; @@ -6799,6 +7249,15 @@ let sha512 = "1GJnq7RwuFPRicMHdT53vza5v39nep9OKIbozxNUpFXP04CydcdWrqpZQ+MlVdlLFCisWnnt09xughajjWpFsw=="; }; }; + "@types/nlcst-1.0.0" = { + name = "_at_types_slash_nlcst"; + packageName = "@types/nlcst"; + version = "1.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/@types/nlcst/-/nlcst-1.0.0.tgz"; + sha512 = "3TGCfOcy8R8mMQ4CNSNOe3PG66HttvjcLzCoOpvXvDtfWOTi+uT/rxeOKm/qEwbM4SNe1O/PjdiBK2YcTjU4OQ=="; + }; + }; "@types/node-10.12.18" = { name = "_at_types_slash_node"; packageName = "@types/node"; @@ -6817,13 +7276,13 @@ let sha512 = "F0KIgDJfy2nA3zMLmWGKxcH2ZVEtCZXHHdOQs2gSaQ27+lNeEfGxzkIw90aXswATX7AZ33tahPbzy6KAfUreVw=="; }; }; - "@types/node-12.20.36" = { + "@types/node-12.20.37" = { name = "_at_types_slash_node"; packageName = "@types/node"; - version = "12.20.36"; + version = "12.20.37"; src = fetchurl { - url = "https://registry.npmjs.org/@types/node/-/node-12.20.36.tgz"; - sha512 = "+5haRZ9uzI7rYqzDznXgkuacqb6LJhAti8mzZKWxIXn/WEtvB+GHVJ7AuMwcN1HMvXOSJcrvA6PPoYHYOYYebA=="; + url = "https://registry.npmjs.org/@types/node/-/node-12.20.37.tgz"; + sha512 = "i1KGxqcvJaLQali+WuypQnXwcplhtNtjs66eNsZpp2P2FL/trJJxx/VWsM0YCL2iMoIJrbXje48lvIQAQ4p2ZA=="; }; }; "@types/node-13.13.52" = { @@ -6844,13 +7303,13 @@ let sha512 = "oTQgnd0hblfLsJ6BvJzzSL+Inogp3lq9fGgqRkMB/ziKMgEUaFl801OncOzUmalfzt14N0oPHMK47ipl+wbTIw=="; }; }; - "@types/node-14.17.32" = { + "@types/node-14.17.33" = { name = "_at_types_slash_node"; packageName = "@types/node"; - version = "14.17.32"; + version = "14.17.33"; src = fetchurl { - url = "https://registry.npmjs.org/@types/node/-/node-14.17.32.tgz"; - sha512 = "JcII3D5/OapPGx+eJ+Ik1SQGyt6WvuqdRfh9jUwL6/iHGjmyOriBDciBUu7lEIBTL2ijxwrR70WUnw5AEDmFvQ=="; 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+ sha512 = "+hQX+WyJAOne7Fh3zF5CxPemILIbuhNcqHHodzK9caYOLnC8pD5efmPleRnw0z++LfKUC/sVNMwk0Gap+B0baA=="; + }; + }; "@types/pbkdf2-3.1.0" = { name = "_at_types_slash_pbkdf2"; packageName = "@types/pbkdf2"; @@ -7240,6 +7717,15 @@ let sha512 = "kdU8ydio1weSvhIIh9rptZ6MdMiR2NQGFnlnZ5qQ7OiQS1ej79zK4GaJ9qX3naSTpOA7iWqwUnZCQpd7SpD1NA=="; }; }; + "@types/supports-color-8.1.1" = { + name = "_at_types_slash_supports-color"; + packageName = "@types/supports-color"; + version = "8.1.1"; + src = fetchurl { + url = "https://registry.npmjs.org/@types/supports-color/-/supports-color-8.1.1.tgz"; + sha512 = "dPWnWsf+kzIG140B8z2w3fr5D03TLWbOAFQl45xUpI3vcizeXriNR5VYkWZ+WTMsUHqZ9Xlt3hrxGNANFyNQfw=="; + }; + }; "@types/tapable-1.0.8" = { name = "_at_types_slash_tapable"; packageName = "@types/tapable"; @@ -7339,13 +7825,13 @@ let sha512 = "ayJ0iOCDNHnKpKTgBG6Q6JOnHTj9zFta+3j2b8Ejza0e4cvRyMn0ZoLEmbPrTHe5YYRlDYPvPWVdV4cTaRyH7g=="; }; }; - "@types/vscode-1.61.0" = { + "@types/vscode-1.62.0" = { name = "_at_types_slash_vscode"; packageName = "@types/vscode"; - version = "1.61.0"; + version = "1.62.0"; src = fetchurl { - url = "https://registry.npmjs.org/@types/vscode/-/vscode-1.61.0.tgz"; - sha512 = "9k5Nwq45hkRwdfCFY+eKXeQQSbPoA114mF7U/4uJXRBJeGIO7MuJdhF1PnaDN+lllL9iKGQtd6FFXShBXMNaFg=="; + url = "https://registry.npmjs.org/@types/vscode/-/vscode-1.62.0.tgz"; + sha512 = "iGlQJ1w5e3qPUryroO6v4lxg3ql1ztdTCwQW3xEwFawdyPLoeUSv48SYfMwc7kQA7h6ThUqflZIjgKAykeF9oA=="; }; }; "@types/webpack-4.41.31" = { @@ -7429,15 +7915,6 @@ let sha512 = "S9q47ByT2pPvD65IvrWp7qppVMpk9WGMbVq9wbWZOHg6tnXSD4vyhao6nOSBwwfDdV2p3Kx9evA9vI+XWTfDvw=="; }; }; - "@types/zen-observable-0.8.3" = { - name = "_at_types_slash_zen-observable"; - packageName = "@types/zen-observable"; - version = "0.8.3"; - src = fetchurl { - url = "https://registry.npmjs.org/@types/zen-observable/-/zen-observable-0.8.3.tgz"; - sha512 = "fbF6oTd4sGGy0xjHPKAt+eS2CrxJ3+6gQ3FGcBoIJR2TLAyCkCyI8JqZNy+FeON0AhVgNJoUumVoZQjBFUqHkw=="; - }; - }; "@typescript-eslint/eslint-plugin-4.33.0" = { name = "_at_typescript-eslint_slash_eslint-plugin"; packageName = "@typescript-eslint/eslint-plugin"; @@ -9238,6 +9715,15 @@ let sha512 = "SMJOdDP6LqTkD0Uq8qLi+gMwSt0imXLSV080qFVwJCpH9U6Mb+SUGHAXM0KNbcBPguytWyvFxcHgMLe2D2XSpw=="; }; }; + "ajv-8.7.1" = { + name = "ajv"; + packageName = "ajv"; + version = "8.7.1"; + src = fetchurl { + url = "https://registry.npmjs.org/ajv/-/ajv-8.7.1.tgz"; + sha512 = "gPpOObTO1QjbnN1sVMjJcp1TF9nggMfO4MBR5uQl6ZVTOaEPq5i4oq/6R9q2alMMPB3eg53wFv1RuJBLuxf3Hw=="; + }; + }; "ajv-errors-1.0.1" = { name = "ajv-errors"; packageName = "ajv-errors"; @@ -9823,22 +10309,22 @@ let sha512 = "y8H99NExU1Sk4TvcaUxTdzfq2SZo6uSj5dyh75XSQvbpH6gdAXIW9MaBcvlNC7n0cVPsidHmOcHOWxJ/pTXGjA=="; }; }; - "apollo-datasource-3.2.0" = { + "apollo-datasource-3.3.0" = { name = "apollo-datasource"; packageName = "apollo-datasource"; - version = "3.2.0"; + version = "3.3.0"; src = fetchurl { - url = "https://registry.npmjs.org/apollo-datasource/-/apollo-datasource-3.2.0.tgz"; - sha512 = "2PK+p6dRFuQQM8F4JbBivGetnJxvb8ggQkY7XLeCSl4qVkBeBjX+mRtsiudk28NUTH3JEll7AgmKj2fHfxYpGQ=="; + url = "https://registry.npmjs.org/apollo-datasource/-/apollo-datasource-3.3.0.tgz"; + sha512 = "It8POTZTOCAnedRj2izEVeySN06LIfojigZjWaOY7voLe0DIgtvhql91xr27fuIWsR/Ew9twO3dLBjjvy34J4Q=="; }; }; - "apollo-graphql-0.9.4" = { + "apollo-graphql-0.9.5" = { name = "apollo-graphql"; packageName = "apollo-graphql"; - version = "0.9.4"; + version = "0.9.5"; src = fetchurl { - url = "https://registry.npmjs.org/apollo-graphql/-/apollo-graphql-0.9.4.tgz"; - sha512 = "0X2sZxfmn7lJrRknUPBG+L0LP1B0SKX1qtULIWrDbIpyl9LuSyjnDaGtmvc4IQtyKvmQXtAhEHBnprRokkjkyw=="; + url = "https://registry.npmjs.org/apollo-graphql/-/apollo-graphql-0.9.5.tgz"; + sha512 = "RGt5k2JeBqrmnwRM0VOgWFiGKlGJMfmiif/4JvdaEqhMJ+xqe/9cfDYzXfn33ke2eWixsAbjEbRfy8XbaN9nTw=="; }; }; "apollo-link-1.2.1" = { @@ -9868,13 +10354,13 @@ let sha512 = "B3XmnkH6Y458iV6OsA7AhfwvTgeZnFq9nPVjbxmLKnvfkEl8hYADtz724uPa0WeBiD7DSFcnLtqg9yGmCkBohg=="; }; }; - "apollo-reporting-protobuf-3.1.0" = { + "apollo-reporting-protobuf-3.2.0" = { name = "apollo-reporting-protobuf"; packageName = "apollo-reporting-protobuf"; - version = "3.1.0"; + version = "3.2.0"; src = fetchurl { - url = "https://registry.npmjs.org/apollo-reporting-protobuf/-/apollo-reporting-protobuf-3.1.0.tgz"; - sha512 = "IP7SHrTQEGc1/RYzOihfcLLF56ALxxORywJj5ba/p1SX99y+Stt+6D5+3DA7XFF00C1BhXkIU+EkFHzPmypz0w=="; + url = "https://registry.npmjs.org/apollo-reporting-protobuf/-/apollo-reporting-protobuf-3.2.0.tgz"; + sha512 = "2v/5IRJeTGakCJo8kS2LeKUcLsgqxO/HpEyu1EaW79F0CsvrIk10tOIGxouoOgtVl5e1wfGePJ849CUWWczx2A=="; }; }; "apollo-server-caching-0.7.0" = { @@ -9886,31 +10372,31 @@ let sha512 = "MsVCuf/2FxuTFVhGLK13B+TZH9tBd2qkyoXKKILIiGcZ5CDUEBO14vIV63aNkMkS1xxvK2U4wBcuuNj/VH2Mkw=="; }; }; - "apollo-server-caching-3.2.0" = { + "apollo-server-caching-3.3.0" = { name = "apollo-server-caching"; packageName = "apollo-server-caching"; - version = "3.2.0"; + version = "3.3.0"; src = fetchurl { - url = "https://registry.npmjs.org/apollo-server-caching/-/apollo-server-caching-3.2.0.tgz"; - sha512 = "kR92WjoQVe1Z/EXyh365w6Vz8egkRCKmd3mE7KJvKgk+f0+AGO1LPPrez5IhbCXxAgChqzpHhq2FIyfOqEuLFQ=="; + url = "https://registry.npmjs.org/apollo-server-caching/-/apollo-server-caching-3.3.0.tgz"; + sha512 = "Wgcb0ArjZ5DjQ7ID+tvxUcZ7Yxdbk5l1MxZL8D8gkyjooOkhPNzjRVQ7ubPoXqO54PrOMOTm1ejVhsF+AfIirQ=="; }; }; - "apollo-server-core-2.25.2" = { + "apollo-server-core-2.25.3" = { name = "apollo-server-core"; packageName = "apollo-server-core"; - version = "2.25.2"; + version = "2.25.3"; src = fetchurl { - url = "https://registry.npmjs.org/apollo-server-core/-/apollo-server-core-2.25.2.tgz"; - sha512 = "lrohEjde2TmmDTO7FlOs8x5QQbAS0Sd3/t0TaK2TWaodfzi92QAvIsq321Mol6p6oEqmjm8POIDHW1EuJd7XMA=="; + url = "https://registry.npmjs.org/apollo-server-core/-/apollo-server-core-2.25.3.tgz"; + sha512 = "Midow3uZoJ9TjFNeCNSiWElTVZlvmB7G7tG6PPoxIR9Px90/v16Q6EzunDIO0rTJHRC3+yCwZkwtf8w2AcP0sA=="; }; }; - "apollo-server-core-3.4.0" = { + "apollo-server-core-3.5.0" = { name = "apollo-server-core"; packageName = "apollo-server-core"; - version = "3.4.0"; + version = "3.5.0"; src = fetchurl { - url = "https://registry.npmjs.org/apollo-server-core/-/apollo-server-core-3.4.0.tgz"; - sha512 = "CbQTgoeijCdfaTFq3DHBrnWtat1M/SlPxS365iy2fb2/p4zbYatOA/S0RON7PMGp2gcMnopvOtokJIOxbNN/YA=="; + url = "https://registry.npmjs.org/apollo-server-core/-/apollo-server-core-3.5.0.tgz"; + sha512 = "c3wEnPSnzvWvYvRJq1B+yIpa+vBvm0kq0tvD4j/IOw/F1s3sadu43Xr4FiLw++UfeLyh3aS5Wk68hjvrW1ceiQ=="; }; }; "apollo-server-env-3.1.0" = { @@ -9922,13 +10408,13 @@ let sha512 = "iGdZgEOAuVop3vb0F2J3+kaBVi4caMoxefHosxmgzAbbSpvWehB8Y1QiSyyMeouYC38XNVk5wnZl+jdGSsWsIQ=="; }; }; - "apollo-server-env-4.1.0" = { + "apollo-server-env-4.2.0" = { name = "apollo-server-env"; packageName = "apollo-server-env"; - version = "4.1.0"; + version = "4.2.0"; src = fetchurl { - url = "https://registry.npmjs.org/apollo-server-env/-/apollo-server-env-4.1.0.tgz"; - sha512 = "pJIqIN7UXYDHcNY/IRi7H9AvdV+aHi96gv/nPmnLsP/LbWMJvMuQY3jQ2obW0P+rO3bx05oYHLsVjwHHaXlEQA=="; + url = "https://registry.npmjs.org/apollo-server-env/-/apollo-server-env-4.2.0.tgz"; + sha512 = "4xJ+PCoWsFLj4rU6iXrIhqD7nI42goi4Iqrhsof9680ljSzkzd+PCwZsja3mHOFXKUQQUvJ7StVSgwaiRu45+A=="; }; }; "apollo-server-errors-2.5.0" = { @@ -9940,31 +10426,31 @@ let sha512 = "lO5oTjgiC3vlVg2RKr3RiXIIQ5pGXBFxYGGUkKDhTud3jMIhs+gel8L8zsEjKaKxkjHhCQAA/bcEfYiKkGQIvA=="; }; }; - "apollo-server-errors-3.2.0" = { + "apollo-server-errors-3.3.0" = { name = "apollo-server-errors"; packageName = "apollo-server-errors"; - version = "3.2.0"; + version = "3.3.0"; src = fetchurl { - url = "https://registry.npmjs.org/apollo-server-errors/-/apollo-server-errors-3.2.0.tgz"; - sha512 = "Y7YH3JVAaR1199ao4dae3j1UrF9D/6AJwHpsORTjI3BvrwjU1X7Nk1VvEHn9bZfZF6ONaqUM+uCLm5c8GPhffQ=="; + url = "https://registry.npmjs.org/apollo-server-errors/-/apollo-server-errors-3.3.0.tgz"; + sha512 = "9/MNlPZBbEjcCdJcUSbKbVEBT9xZS8GSpX7T/TyzcxHSbsXJszSDSipQNGC+PRKTKAUnv61IONScVyLKEZ5XEQ=="; }; }; - "apollo-server-express-2.25.2" = { + "apollo-server-express-2.25.3" = { name = "apollo-server-express"; packageName = "apollo-server-express"; - version = "2.25.2"; + version = "2.25.3"; src = fetchurl { - url = "https://registry.npmjs.org/apollo-server-express/-/apollo-server-express-2.25.2.tgz"; - sha512 = "A2gF2e85vvDugPlajbhr0A14cDFDIGX0mteNOJ8P3Z3cIM0D4hwrWxJidI+SzobefDIyIHu1dynFedJVhV0euQ=="; + url = "https://registry.npmjs.org/apollo-server-express/-/apollo-server-express-2.25.3.tgz"; + sha512 = "tTFYn0oKH2qqLwVj7Ez2+MiKleXACODiGh5IxsB7VuYCPMAi9Yl8iUSlwTjQUvgCWfReZjnf0vFL2k5YhDlrtQ=="; }; }; - "apollo-server-express-3.4.0" = { + "apollo-server-express-3.5.0" = { name = "apollo-server-express"; packageName = "apollo-server-express"; - version = "3.4.0"; + version = "3.5.0"; src = fetchurl { - url = "https://registry.npmjs.org/apollo-server-express/-/apollo-server-express-3.4.0.tgz"; - sha512 = "+J7Nu+I+JLCEnBQrQAzKmZfguHo9GQNb6XJZYuNlg9jdcomAvJpEJW5SKujXiGCT9CCIB6jvf8s102pJvBC9TQ=="; + url = "https://registry.npmjs.org/apollo-server-express/-/apollo-server-express-3.5.0.tgz"; + sha512 = "eFyBC4ate/g5GrvxM+HrtiElxCEbvG+CiJ0/R1i62L+wzXDhgD6MU0SW17ceS1mpBJgDxURu/VS5hUSNyWMa3Q=="; }; }; "apollo-server-plugin-base-0.13.0" = { @@ -9976,13 +10462,13 @@ let sha512 = "L3TMmq2YE6BU6I4Tmgygmd0W55L+6XfD9137k+cWEBFu50vRY4Re+d+fL5WuPkk5xSPKd/PIaqzidu5V/zz8Kg=="; }; }; - "apollo-server-plugin-base-3.3.0" = { + "apollo-server-plugin-base-3.4.0" = { name = "apollo-server-plugin-base"; packageName = "apollo-server-plugin-base"; - version = "3.3.0"; + version = "3.4.0"; src = fetchurl { - url = "https://registry.npmjs.org/apollo-server-plugin-base/-/apollo-server-plugin-base-3.3.0.tgz"; - sha512 = "4a4KpePhoU9FAIN2YjWm1Cfl7Y3AyRXLH8ZncSRCDcQFWww8gc/ZGqWZ+udRo4ejKvzLjnTwVyxfrd80sf9sHw=="; + url = "https://registry.npmjs.org/apollo-server-plugin-base/-/apollo-server-plugin-base-3.4.0.tgz"; + sha512 = "Z9musk7Z/1v+Db6aOoxcHfmsgej2yEBzBz5kVGOc81/XAtdv6bjasKSLC3RiySAUzWSLBJRUeEGIEVhhk/j2Zg=="; }; }; "apollo-server-types-0.9.0" = { @@ -9994,13 +10480,13 @@ let sha512 = "qk9tg4Imwpk732JJHBkhW0jzfG0nFsLqK2DY6UhvJf7jLnRePYsPxWfPiNkxni27pLE2tiNlCwoDFSeWqpZyBg=="; }; }; - "apollo-server-types-3.3.0" = { + "apollo-server-types-3.4.0" = { name = "apollo-server-types"; packageName = "apollo-server-types"; - version = "3.3.0"; + version = "3.4.0"; src = fetchurl { - url = "https://registry.npmjs.org/apollo-server-types/-/apollo-server-types-3.3.0.tgz"; - sha512 = "m+GyuXyuZ7YdZO1NIMJdJoOKsocCPx/WRVzBjDegYxNcAa/lDvNYU3hFyX87UGXt8Xsd9VIHxdhO88S6jkgCmw=="; + url = "https://registry.npmjs.org/apollo-server-types/-/apollo-server-types-3.4.0.tgz"; + sha512 = "iFNRENtxDoFWoY+KxpGP+TYyRnqUPqUTubMJVgiXPDvOPFL8dzqGGmqq1g/VCeWFHRJTPBLWhOfQU7ktwDEjnQ=="; }; }; "apollo-tracing-0.15.0" = { @@ -10084,6 +10570,15 @@ let sha512 = "rPMUMkR8JjjPDDHHDZ/YeLO0KIbUGCrXgy921F6sBkEXBR9jYYxK8LUlwpZkUVi70cMR6r8uSmHZ/5HvtrntHg=="; }; }; + "append-type-1.0.2" = { + name = "append-type"; + packageName = "append-type"; + version = "1.0.2"; + src = fetchurl { + url = "https://registry.npmjs.org/append-type/-/append-type-1.0.2.tgz"; + sha512 = "hac740vT/SAbrFBLgLIWZqVT5PUAcGTWS5UkDDhr+OCizZSw90WKw6sWAEgGaYd2viIblggypMXwpjzHXOvAQg=="; + }; + }; "appendable-cli-menu-2.0.0" = { name = "appendable-cli-menu"; packageName = "appendable-cli-menu"; @@ -10633,6 +11128,24 @@ let sha512 = "ihLeJkonmdiAsD7vpgN3CRcx2J2S0TiYW+IS/5zHBI7mKUq3ySvBdzzBfD236ubDBQFiiyG3SWCPc+msQ9KoYg=="; }; }; + "array-timsort-1.0.3" = { + name = "array-timsort"; + packageName = "array-timsort"; + version = "1.0.3"; + src = fetchurl { + url = "https://registry.npmjs.org/array-timsort/-/array-timsort-1.0.3.tgz"; + sha512 = "/+3GRL7dDAGEfM6TseQk/U+mi18TU2Ms9I3UlLdUMhz2hbvGNTKdj9xniwXfUqgYhHxRx0+8UnKkvlNwVU+cWQ=="; + }; + }; + "array-to-sentence-1.1.0" = { + name = "array-to-sentence"; + packageName = "array-to-sentence"; + version = "1.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/array-to-sentence/-/array-to-sentence-1.1.0.tgz"; + sha1 = "c804956dafa53232495b205a9452753a258d39fc"; + }; + }; "array-union-1.0.2" = { name = "array-union"; packageName = "array-union"; @@ -10822,13 +11335,13 @@ let sha1 = "dac8787713c9966849fc8180777ebe9c1ddf3b86"; }; }; - "asn1-0.2.4" = { + "asn1-0.2.6" = { name = "asn1"; packageName = "asn1"; - version = "0.2.4"; + version = "0.2.6"; src = fetchurl { - url = "https://registry.npmjs.org/asn1/-/asn1-0.2.4.tgz"; - sha512 = "jxwzQpLQjSmWXgwaCZE9Nz+glAG01yF1QnWgbhGwHI5A6FRIEY6IVqtHhIepHqI7/kyEyQEagBC5mBEFlIYvdg=="; + url = "https://registry.npmjs.org/asn1/-/asn1-0.2.6.tgz"; + sha512 = "ix/FxPn0MDjeyJ7i/yoHGFt/EX6LyNbxSEhPPXODPL+KB0VPk86UYfL0lMdy+KCnv+fmvIzySwaK5COwqVbWTQ=="; }; }; "asn1.js-5.4.1" = { @@ -10894,6 +11407,15 @@ let sha1 = "f12e0f3c5d77b0b1cdd9146942e4e96c1e4dd525"; }; }; + "assert-valid-glob-opts-1.0.0" = { + name = "assert-valid-glob-opts"; + packageName = "assert-valid-glob-opts"; + version = "1.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/assert-valid-glob-opts/-/assert-valid-glob-opts-1.0.0.tgz"; + sha512 = "/mttty5Xh7wE4o7ttKaUpBJl0l04xWe3y6muy1j27gyzSsnceK0AYU9owPtUoL9z8+9hnPxztmuhdFZ7jRoyWw=="; + }; + }; "assertion-error-1.1.0" = { name = "assertion-error"; packageName = "assertion-error"; @@ -11434,13 +11956,13 @@ let sha1 = "00f35b2d27ac91b1f0d3ef2084c98cf1d1f0adc3"; }; }; - "aws-sdk-2.1020.0" = { + "aws-sdk-2.1027.0" = { name = "aws-sdk"; packageName = "aws-sdk"; - version = "2.1020.0"; + version = "2.1027.0"; src = fetchurl { - url = "https://registry.npmjs.org/aws-sdk/-/aws-sdk-2.1020.0.tgz"; - sha512 = "cCFLGRfzJn0whOioljFjcFpQTXWB4PTdVnrpNhX2R687W3Yz6WriHxHqIxVnIke1yp9twU00z4kW522U809l0g=="; + url = "https://registry.npmjs.org/aws-sdk/-/aws-sdk-2.1027.0.tgz"; + sha512 = "j3UjPV9hzyCvkmfcbhRscMggdmrPqlhvo8QzkXCGFfPXjZMh1OJd4HkCEH2NaunzLOyF2Y3QzxKrGOLMT7sNzg=="; }; }; "aws-sdk-2.920.0" = { @@ -11551,13 +12073,13 @@ let sha512 = "j2hHu0asf6HxacVmGJKFSsrfoG8nC0JEjujIpsmRVkr74nC6o5gs6YF6AQD3e7YyJ8PaKuA7k2uSL9A2mAG9Og=="; }; }; - "b4a-1.1.0" = { + "b4a-1.1.2" = { name = "b4a"; packageName = "b4a"; - version = "1.1.0"; + version = "1.1.2"; src = fetchurl { - url = "https://registry.npmjs.org/b4a/-/b4a-1.1.0.tgz"; - sha512 = "jFyBIqfvniR+iaSbG7EdfqKclZv4ST+O9T4YBybgO1aHm/a6WwF13O0EXNF6PdLwUGZ0xu4myHjw1yq06k105w=="; + url = "https://registry.npmjs.org/b4a/-/b4a-1.1.2.tgz"; + sha512 = "mL0ZchJqyNLojO7XxJ7VYk5lws0RVFvjDiLilAbJTsClbpIE1ESUOBNKQaRIXmlZgoU8ckusIEeOrWEbFuDymg=="; }; }; "babel-code-frame-6.26.0" = { @@ -12109,6 +12631,15 @@ let sha1 = "31ab1ac8b129363463e35b3ebb69f4dfcfba7947"; }; }; + "backoff-2.3.0" = { + name = "backoff"; + packageName = "backoff"; + version = "2.3.0"; + src = fetchurl { + url = "https://registry.npmjs.org/backoff/-/backoff-2.3.0.tgz"; + sha1 = "ee7c7e38093f92e472859db635e7652454fc21ea"; + }; + }; "backoff-2.4.1" = { name = "backoff"; packageName = "backoff"; @@ -12145,6 +12676,15 @@ let sha512 = "xFbRxM1tahm08yHBP16MMjVUAvDaBMD38zsM9EMAUN61omwLmKlOpB/Zku5QkjZ8TZ4vn53pj+t518cH0S03RQ=="; }; }; + "bail-2.0.2" = { + name = "bail"; + packageName = "bail"; + version = "2.0.2"; + src = fetchurl { + url = "https://registry.npmjs.org/bail/-/bail-2.0.2.tgz"; + sha512 = "0xO6mYd7JB2YesxDKplafRpsiOzPt9V02ddPCLbY1xYGPOX24NTyN50qnUxgCPcSoYMhKpAuBTjQoRZCAkUDRw=="; + }; + }; "balanced-match-1.0.2" = { name = "balanced-match"; packageName = "balanced-match"; @@ -12667,13 +13207,13 @@ let sha512 = "j51egjPa7/i+RdiRuJbPdJ2FIUYYPhvYLjzoYbcMMm62ooO6F94fETG4MTs46zPAF9Brs04OajboA/qTGuz78w=="; }; }; - "big-integer-1.6.50" = { + "big-integer-1.6.51" = { name = "big-integer"; packageName = "big-integer"; - version = "1.6.50"; + version = "1.6.51"; src = fetchurl { - url = "https://registry.npmjs.org/big-integer/-/big-integer-1.6.50.tgz"; - sha512 = "+O2uoQWFRo8ysZNo/rjtri2jIwjr3XfeAgRjAUADRqGG+ZITvyn8J1kvXLTaKVr3hhGXk+f23tKfdzmklVM9vQ=="; + url = "https://registry.npmjs.org/big-integer/-/big-integer-1.6.51.tgz"; + sha512 = "GPEid2Y9QU1Exl1rpO9B2IPJGHPSupF5GnVIP0blYvNOMer2bTvSWs1jGOUg04hTmu67nmLsQ9TBo1puaotBHg=="; }; }; "big.js-3.2.0" = { @@ -13081,6 +13621,15 @@ let sha512 = "1W07cM9gS6DcLperZfFSj+bWLtaPGSOHWhPiGzXmvVJbRLdG82sH/Kn8EtW1VqWVA54AKf2h5k5BbnIbwF3h6w=="; }; }; + "bl-5.0.0" = { + name = "bl"; + packageName = "bl"; + version = "5.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/bl/-/bl-5.0.0.tgz"; + sha512 = "8vxFNZ0pflFfi0WXA3WQXlj6CaMEwsmh63I1CNp0q+wWv8sD0ARx1KovSQd0l2GkwrMIOyedq0EF1FxI+RCZLQ=="; + }; + }; "blake2b-2.1.3" = { name = "blake2b"; packageName = "blake2b"; @@ -13378,6 +13927,15 @@ let sha1 = "090700c4ba28862a8520ef378395fdee5f61c229"; }; }; + "body-parser-1.18.2" = { + name = "body-parser"; + packageName = "body-parser"; + version = "1.18.2"; + src = fetchurl { + url = "https://registry.npmjs.org/body-parser/-/body-parser-1.18.2.tgz"; + sha1 = "87678a19d84b47d859b83199bd59bce222b10454"; + }; + }; "body-parser-1.18.3" = { name = "body-parser"; packageName = "body-parser"; @@ -13666,6 +14224,15 @@ let sha512 = "zgmaRvT6AN1JpPPV+S0a1/FAtoxSreYDccZGIqEMSvZl9DMe70mJ7MFzpxa1X+gHVdkToE2haRUHHMiW1OdejA=="; }; }; + "bplist-parser-0.3.1" = { + name = "bplist-parser"; + packageName = "bplist-parser"; + version = "0.3.1"; + src = fetchurl { + url = "https://registry.npmjs.org/bplist-parser/-/bplist-parser-0.3.1.tgz"; + sha512 = "PyJxiNtA5T2PlLIeBot4lbp7rj4OadzjnMZD/G5zuBNt8ei/yCU7+wW0h2bag9vr8c+/WuRWmSxbqAl9hL1rBA=="; + }; + }; "brace-expansion-1.1.11" = { name = "brace-expansion"; packageName = "brace-expansion"; @@ -14459,6 +15026,15 @@ let sha1 = "cb94faeb61c8696451db36534e1422f94f0aee88"; }; }; + "builtins-4.0.0" = { + name = "builtins"; + packageName = "builtins"; + version = "4.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/builtins/-/builtins-4.0.0.tgz"; + sha512 = "qC0E2Dxgou1IHhvJSLwGDSTvokbRovU5zZFuDY6oY8Y2lF3nGt5Ad8YZK7GMtqzY84Wu7pXTPeHQeHcXSXsRhw=="; + }; + }; "bulk-write-stream-1.1.4" = { name = "bulk-write-stream"; packageName = "bulk-write-stream"; @@ -14999,13 +15575,13 @@ let sha512 = "bsTwuIg/BZZK/vreVTYYbSWoe2F+71P7K5QGEX+pT250DZbfU1MQ5prOKpPR+LL6uWKK3KMwMCAS74QB3Um1uw=="; }; }; - "caniuse-lite-1.0.30001274" = { + "caniuse-lite-1.0.30001280" = { name = "caniuse-lite"; packageName = "caniuse-lite"; - version = "1.0.30001274"; + version = "1.0.30001280"; src = fetchurl { - url = "https://registry.npmjs.org/caniuse-lite/-/caniuse-lite-1.0.30001274.tgz"; - sha512 = "+Nkvv0fHyhISkiMIjnyjmf5YJcQ1IQHZN6U9TLUMroWR38FNwpsC51Gb68yueafX1V6ifOisInSgP9WJFS13ew=="; + url = "https://registry.npmjs.org/caniuse-lite/-/caniuse-lite-1.0.30001280.tgz"; + sha512 = "kFXwYvHe5rix25uwueBxC569o53J6TpnGu0BEEn+6Lhl2vsnAumRFWEBhDft1fwyo6m1r4i+RqA4+163FpeFcA=="; }; }; "canvas-2.8.0" = { @@ -15152,6 +15728,15 @@ let sha512 = "H5WTjQYgyHQI0VrCmbyQBOPy1353MjmUi/r3DbPib4U13vuyqm7es9Mfpe8G58bN/mCdRlJWkiCrPl1uM1wAlg=="; }; }; + "cbor-8.1.0" = { + name = "cbor"; + packageName = "cbor"; + version = "8.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/cbor/-/cbor-8.1.0.tgz"; + sha512 = "DwGjNW9omn6EwP70aXsn7FQJx5kO12tX0bZkaTjzdVFM6/7nhA4t0EENocKGx6D2Bch9PE2KzCUf5SceBdeijg=="; + }; + }; "ccount-1.1.0" = { name = "ccount"; packageName = "ccount"; @@ -15161,22 +15746,31 @@ let sha512 = "vlNK021QdI7PNeiUh/lKkC/mNHHfV0m/Ad5JoI0TYtlBnJAslM/JIkm/tGC88bkLIwO6OQ5uV6ztS6kVAtCDlg=="; }; }; - "cdk8s-1.1.21" = { - name = "cdk8s"; - packageName = "cdk8s"; - version = "1.1.21"; + "ccount-2.0.1" = { + name = "ccount"; + packageName = "ccount"; + version = "2.0.1"; src = fetchurl { - url = "https://registry.npmjs.org/cdk8s/-/cdk8s-1.1.21.tgz"; - sha512 = "jgPspKVy08Tccc2MioscI0aKU3JmlHlKiYTETvDYtONoitRW76ylK5Im+mX/Zy0nCF0Kwuxs6383RYKjwPaecQ=="; + url = "https://registry.npmjs.org/ccount/-/ccount-2.0.1.tgz"; + sha512 = "eyrF0jiFpY+3drT6383f1qhkbGsLSifNAjA61IUjZjmLCWjItY6LB9ft9YhoDgwfmclB2zhu51Lc7+95b8NRAg=="; }; }; - "cdk8s-plus-22-1.0.0-beta.28" = { + "cdk8s-1.1.31" = { + name = "cdk8s"; + packageName = "cdk8s"; + version = "1.1.31"; + src = fetchurl { + url = "https://registry.npmjs.org/cdk8s/-/cdk8s-1.1.31.tgz"; + sha512 = "mPFT6pSE4n8p5wE6IjJZeCfJAU5kZBmSjYIbT3Jkz4KYtiSSbdKB3tD/b37VL4RZCOv4OqCAU3mF87BgB+xu0w=="; + }; + }; + "cdk8s-plus-22-1.0.0-beta.38" = { name = "cdk8s-plus-22"; packageName = "cdk8s-plus-22"; - version = "1.0.0-beta.28"; + version = "1.0.0-beta.38"; src = fetchurl { - url = "https://registry.npmjs.org/cdk8s-plus-22/-/cdk8s-plus-22-1.0.0-beta.28.tgz"; - sha512 = "14QKJGI1PTtf9l5n+r03pDLPerxlS49xGPz2nerGIczUpfFVed5PdoeXWtWRDWjfBjPN2IcGPCy/8gdsmDTVEg=="; + url = "https://registry.npmjs.org/cdk8s-plus-22/-/cdk8s-plus-22-1.0.0-beta.38.tgz"; + sha512 = "tSBAA6H8hSnuMWFWmFepGsS+gMh+3bWCbKCRL3FfJbh7iH9H1SESmWNUgAMMwzoFKCT3MyKSVt6gbbisP6LOlA=="; }; }; "cdktf-0.7.0" = { @@ -16061,6 +16655,15 @@ let sha512 = "MciirUH5r+cYLGCOL5JX/ZLzOZbVr1ot3Fw+KcvbhUb6PM+yycqd9ZhIlcigQ5gl+XhppNmw3bEFuaaMNyLj3A=="; }; }; + "clear-module-4.1.2" = { + name = "clear-module"; + packageName = "clear-module"; + version = "4.1.2"; + src = fetchurl { + url = "https://registry.npmjs.org/clear-module/-/clear-module-4.1.2.tgz"; + sha512 = "LWAxzHqdHsAZlPlEyJ2Poz6AIs384mPeqLVCru2p0BrP9G/kVGuhNyZYClLO6cXlnuJjzC8xtsJIuMjKqLXoAw=="; + }; + }; "cli-1.0.1" = { name = "cli"; packageName = "cli"; @@ -16142,6 +16745,15 @@ let sha512 = "I/zHAwsKf9FqGoXM4WWRACob9+SNukZTd94DWF57E4toouRulbCxcUh6RKUEOQlYTHJnzkPMySvPNaaSLNfLZw=="; }; }; + "cli-cursor-4.0.0" = { + name = "cli-cursor"; + packageName = "cli-cursor"; + version = "4.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/cli-cursor/-/cli-cursor-4.0.0.tgz"; + sha512 = "VGtlMu3x/4DOtIUwEkRezxUZ2lBacNJCHash0N0WeZDBS+7Ux1dm3XWAgWYxLJFMMdOeXMHXorshEFhbMSGelg=="; + }; + }; "cli-list-0.2.0" = { name = "cli-list"; packageName = "cli-list"; @@ -16475,6 +17087,15 @@ let sha1 = "b8d19188b3243e390f302410bd0cb1622db82649"; }; }; + "clone-0.1.19" = { + name = "clone"; + packageName = "clone"; + version = "0.1.19"; + src = fetchurl { + url = "https://registry.npmjs.org/clone/-/clone-0.1.19.tgz"; + sha1 = "613fb68639b26a494ac53253e15b1a6bd88ada85"; + }; + }; "clone-0.1.5" = { name = "clone"; packageName = "clone"; @@ -16781,13 +17402,13 @@ let sha512 = "3WQV/Fpa77nvzjUlc+0u53uIroJyyMB2Qwl++aXpAiDIsrsiAQq4uCURwdRBRX+eLkOTIAmT0L4qna3T7+2pUg=="; }; }; - "codemaker-1.42.0" = { + "codemaker-1.43.0" = { name = "codemaker"; packageName = "codemaker"; - version = "1.42.0"; + version = "1.43.0"; src = fetchurl { - url = "https://registry.npmjs.org/codemaker/-/codemaker-1.42.0.tgz"; - sha512 = "pjLw1YeWKdY09tDmr6HmeZCGd6G+Ku1UP3cK/oX79x5iEL2ZEm8kJrGQisasK6pk/Er75sDZA86c5Cn7sIx4GQ=="; + url = "https://registry.npmjs.org/codemaker/-/codemaker-1.43.0.tgz"; + sha512 = "6FA4syN+22H9V0Dfadk9xbQ894kkeIhOH6HleiLRL0lU6Ts3nMB4lM01cHtnY/5YhLBr+XrHboV5Bi5xVFf4sg=="; }; }; "codepage-1.4.0" = { @@ -17060,6 +17681,15 @@ let sha512 = "GHuDRO12Sypu2cV70d1dkA2EUmXHgntrzbpvOB+Qy+49ypNfGgFQIC2fhhXbnyrJRynDCAARsT7Ou0M6hirpfw=="; }; }; + "comma-separated-tokens-2.0.2" = { + name = "comma-separated-tokens"; + packageName = "comma-separated-tokens"; + version = "2.0.2"; + src = fetchurl { + url = "https://registry.npmjs.org/comma-separated-tokens/-/comma-separated-tokens-2.0.2.tgz"; + sha512 = "G5yTt3KQN4Yn7Yk4ed73hlZ1evrFKXeUW3086p3PRFNp7m2vIjI6Pg+Kgb+oyzhd9F2qdcoj67+y3SdxL5XWsg=="; + }; + }; "command-exists-1.2.9" = { name = "command-exists"; packageName = "command-exists"; @@ -17312,6 +17942,15 @@ let sha512 = "aE2Y4MTFJ870NuB/+2z1cXBhSBBzRydVVjzhFC4gtenEhpnj15yu0qptWGJsO9YGrcPZ3ezX8AWb1VA391MKpQ=="; }; }; + "comment-json-4.1.1" = { + name = "comment-json"; + packageName = "comment-json"; + version = "4.1.1"; + src = fetchurl { + url = "https://registry.npmjs.org/comment-json/-/comment-json-4.1.1.tgz"; + sha512 = "v8gmtPvxhBlhdRBLwdHSjGy9BgA23t9H1FctdQKyUrErPjSrJcdDMqBq9B4Irtm7w3TNYLQJNH6ARKnpyag1sA=="; + }; + }; "commist-1.1.0" = { name = "commist"; packageName = "commist"; @@ -17339,6 +17978,15 @@ let sha512 = "6P6g0uetGpW/sdyUy/iQQCbFF0kWVMSIVSyYz7Zgjcgh8mgw8PQzDNZeyZ5DQ2gM7LBoZPHmnjz8rUthkBG5tw=="; }; }; + "common-tags-1.8.1" = { + name = "common-tags"; + packageName = "common-tags"; + version = "1.8.1"; + src = fetchurl { + url = "https://registry.npmjs.org/common-tags/-/common-tags-1.8.1.tgz"; + sha512 = "uOZd85rJqrdEIE/JjhW5YAeatX8iqjjvVzIyfx7JL7G5r9Tep6YpYT9gEJWhWpVyDQEyzukWd6p2qULpJ8tmBw=="; + }; + }; "commondir-1.0.1" = { name = "commondir"; packageName = "commondir"; @@ -17898,13 +18546,13 @@ let sha1 = "0e790b3abfef90f6ecb77ae8585db9099caf7578"; }; }; - "contentful-management-7.45.0" = { + "contentful-management-7.45.2" = { name = "contentful-management"; packageName = "contentful-management"; - version = "7.45.0"; + version = "7.45.2"; src = fetchurl { - url = "https://registry.npmjs.org/contentful-management/-/contentful-management-7.45.0.tgz"; - sha512 = "EV61fjenq9ym38Sn45g2xoKdh2Tfup3fYekglNLhxPOpNkdmJPyGmsk1fo5STYTynyN/njbRjj1Rtdla0sKebQ=="; + url = "https://registry.npmjs.org/contentful-management/-/contentful-management-7.45.2.tgz"; + sha512 = "NFAkV6mxqOW4SIx8pAhraQq234Gl8+Np8cxaw7+bB9DCelpxmWvySyaoDczAaYmXLZcejeOFt/NS+Rhp7hPvJA=="; }; }; "contentful-sdk-core-6.10.3" = { @@ -18663,13 +19311,13 @@ let sha1 = "06be7abef947a3f14a30fd610671d401bca8b7b6"; }; }; - "create-gatsby-2.1.0" = { + "create-gatsby-2.1.1" = { name = "create-gatsby"; packageName = "create-gatsby"; - version = "2.1.0"; + version = "2.1.1"; src = fetchurl { - url = "https://registry.npmjs.org/create-gatsby/-/create-gatsby-2.1.0.tgz"; - sha512 = "tGBabM9/jUPfHvJ5NyLdLtfGlq5OFpkMgxn+yVYAXyFTf/PqdZ+TauG+YAxAUaVGcP3/BmP64IJLANspJrsWRQ=="; + url = "https://registry.npmjs.org/create-gatsby/-/create-gatsby-2.1.1.tgz"; + sha512 = "TyTrJD5Wa2WTa5PVY3ng1aIo7vqyR3rmQJuGRNPNeRZIfrYBrMGILWIh8TV+pofTKiZsRhPPMmHlpDD62tqPcw=="; }; }; "create-graphback-1.0.1" = { @@ -18915,6 +19563,51 @@ let sha512 = "v1plID3y9r/lPhviJ1wrXpLeyUIGAZ2SHNYTEapm7/8A9nLPoyvVp3RK/EPFqn5kEznyWgYZNsRtYYIWbuG8KA=="; }; }; + "cspell-gitignore-5.12.6" = { + name = "cspell-gitignore"; + packageName = "cspell-gitignore"; + version = "5.12.6"; + src = fetchurl { + url = "https://registry.npmjs.org/cspell-gitignore/-/cspell-gitignore-5.12.6.tgz"; + sha512 = "4C6kNc6y9avFvd0/1LiSi139TZwWc4o1vxWBlSEACjeJ7fMKiunIRCrDPb8QPtzDy+Ot+CGNk+ONi3nBqMX8cw=="; + }; + }; + "cspell-glob-5.12.6" = { + name = "cspell-glob"; + packageName = "cspell-glob"; + version = "5.12.6"; + src = fetchurl { + url = "https://registry.npmjs.org/cspell-glob/-/cspell-glob-5.12.6.tgz"; + sha512 = "trAnJLEsqpS8SbD2ZTBjLlLuauneZwC4BFiizUeb80EoCgexwMS1F2pzHngDQ+u4JmMcIuBsNgTWiYwuyu+/Wg=="; + }; + }; + "cspell-io-5.12.6" = { + name = "cspell-io"; + packageName = "cspell-io"; + version = "5.12.6"; + src = fetchurl { + url = "https://registry.npmjs.org/cspell-io/-/cspell-io-5.12.6.tgz"; + sha512 = "pTcxw5+/GKD5qIxTcQzWq6pTfWmSVAZVD11kkQ9gFYwX+JYdYmm3Af2x8u5oV46IKL0eAuLp7F1kfan1IsRnEA=="; + }; + }; + "cspell-lib-5.12.6" = { + name = "cspell-lib"; + packageName = "cspell-lib"; + version = "5.12.6"; + src = fetchurl { + url = "https://registry.npmjs.org/cspell-lib/-/cspell-lib-5.12.6.tgz"; + sha512 = "aUM9/YKduhyNNpnPxoJqcMj+cuoJqoiKbkp3lm+p08nf6tR7NFGRjf7jtSB5WJh/ZGOoF6F1/7hIIKXxHSvzqA=="; + }; + }; + "cspell-trie-lib-5.12.6" = { + name = "cspell-trie-lib"; + packageName = "cspell-trie-lib"; + version = "5.12.6"; + src = fetchurl { + url = "https://registry.npmjs.org/cspell-trie-lib/-/cspell-trie-lib-5.12.6.tgz"; + sha512 = "ahT/lzhA7WiXzkFadOaXngPfxA74n4YLXXsZi+lL8/GgdezgbcsL4OoKuiKv24pMSLQBuJ6MOSWSr6rlNrImkw=="; + }; + }; "csrf-3.1.0" = { name = "csrf"; packageName = "csrf"; @@ -19365,6 +20058,15 @@ let sha512 = "r45M92nLnGP246ot0Yo5RvbiiMF5Bw/OTIdWJ3OQ4Vbv4hpOeoXVIPxdSmUw+fPJlQOseY+iigJyLSfPMIrddQ=="; }; }; + "csv-stream-0.2.0" = { + name = "csv-stream"; + packageName = "csv-stream"; + version = "0.2.0"; + src = fetchurl { + url = "https://registry.npmjs.org/csv-stream/-/csv-stream-0.2.0.tgz"; + sha512 = "K9kh9wWGsJrvdaDSb3TdSgwVHCky8fRW7/USBq906xsk2+IGA3X+j/BbN9c5xcedhIIlWKQtk1xtVdhNyfIDrA=="; + }; + }; "csv-streamify-3.0.4" = { name = "csv-streamify"; packageName = "csv-streamify"; @@ -19419,6 +20121,15 @@ let sha512 = "X3VvImImJ5q6w0wOgJtxAX+RC06d26egp/A/vdSxqOrsRtAA9biXAkc4PZGj/3gx0+z+gDFri6BpcpwuG1/UEw=="; }; }; + "cuss-2.0.0" = { + name = "cuss"; + packageName = "cuss"; + version = "2.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/cuss/-/cuss-2.0.0.tgz"; + sha512 = "EHbh7F4GHvgyuakXeic9wtfeEYves17MxLpgIsljCbaDil6auJVsTTLV/qwkZ58+Gu+NKmMHVQm81J3BcEqwUg=="; + }; + }; "custom-error-class-1.0.0" = { name = "custom-error-class"; packageName = "custom-error-class"; @@ -20616,13 +21327,13 @@ let sha512 = "E1GI7jMI57hL30OX6Ht/hfQU8DO4AuB9m72WFm4c38GNbUD4Q03//XZaOIHZiY+H1xUaomcot5yk2q/qIZQkGQ=="; }; }; - "deasync-0.1.23" = { + "deasync-0.1.24" = { name = "deasync"; packageName = "deasync"; - version = "0.1.23"; + version = "0.1.24"; src = fetchurl { - url = "https://registry.npmjs.org/deasync/-/deasync-0.1.23.tgz"; - sha512 = "CGZSokFwidI50GOAmkz/7z3QdMzTQqAiUOzt95PuhKgi6VVztn9D03ZCzzi93uUWlp/v6A9osvNWpIvqHvKjTA=="; + url = "https://registry.npmjs.org/deasync/-/deasync-0.1.24.tgz"; + sha512 = "i98vg42xNfRZCymummMAN0rIcQ1gZFinSe3btvPIvy6JFTaeHcumeKybRo2HTv86nasfmT0nEgAn2ggLZhOCVA=="; }; }; "death-1.1.0" = { @@ -21480,6 +22191,15 @@ let sha1 = "80aec64c9d6d97e65cc2a9caa93c0aa6abf73aaa"; }; }; + "depd-1.1.1" = { + name = "depd"; + packageName = "depd"; + version = "1.1.1"; + src = fetchurl { + url = "https://registry.npmjs.org/depd/-/depd-1.1.1.tgz"; + sha1 = "5783b4e1c459f06fa5ca27f991f3d06e7a310359"; + }; + }; "depd-1.1.2" = { name = "depd"; packageName = "depd"; @@ -22974,22 +23694,22 @@ let sha512 = "JrrLcBP15KGrPj0cZ/ALKGmaQ4gJkn3mocf0E3bRKdR3kxKWYcDRpCvdhksYDXw/r3I6tMEcZ7XzyApWFXdVpw=="; }; }; - "electron-rebuild-3.2.3" = { + "electron-rebuild-3.2.5" = { name = "electron-rebuild"; packageName = "electron-rebuild"; - version = "3.2.3"; + version = "3.2.5"; src = fetchurl { - url = "https://registry.npmjs.org/electron-rebuild/-/electron-rebuild-3.2.3.tgz"; - sha512 = "9oxNmKlDCaf651c+yJWCDIBpF6A9aY+wQtasLEeR5AsPYPuOKEX6xHnC2+WgCLOC94JEpCZznecyC84fbwZq4A=="; + url = "https://registry.npmjs.org/electron-rebuild/-/electron-rebuild-3.2.5.tgz"; + sha512 = "U9dKi10V9w/BdIVB8a8dTKYLK3Q1d2WZ+Yo5qfM3XX/O4jI7KpnwgvWgGoVv0jTWPC2NlebF00ffWS/8NfUAtA=="; }; }; - "electron-to-chromium-1.3.887" = { + "electron-to-chromium-1.3.895" = { name = "electron-to-chromium"; packageName = "electron-to-chromium"; - version = "1.3.887"; + version = "1.3.895"; src = fetchurl { - url = "https://registry.npmjs.org/electron-to-chromium/-/electron-to-chromium-1.3.887.tgz"; - sha512 = "QQUumrEjFDKSVYVdaeBmFdyQGoaV+fCSMyWHvfx/u22bRHSTeBQYt6P4jMY+gFd4kgKB9nqk7RMtWkDB49OYPA=="; + url = "https://registry.npmjs.org/electron-to-chromium/-/electron-to-chromium-1.3.895.tgz"; + sha512 = "9Ww3fB8CWctjqHwkOt7DQbMZMpal2x2reod+/lU4b9axO1XJEDUpPMBxs7YnjLhhqpKXIIB5SRYN/B4K0QpvyQ=="; }; }; "electrum-client-git://github.com/janoside/electrum-client" = { @@ -23336,13 +24056,13 @@ let sha512 = "aMWot7H5aC8L4/T8qMYbLdvKlZOdJTH54FxfdFunTGvhMx1BHkJOntWArsVfgAZVwAO9LC2sryPWRcEeUzCe5w=="; }; }; - "engine.io-6.0.0" = { + "engine.io-6.0.1" = { name = "engine.io"; packageName = "engine.io"; - version = "6.0.0"; + version = "6.0.1"; src = fetchurl { - url = "https://registry.npmjs.org/engine.io/-/engine.io-6.0.0.tgz"; - sha512 = "Ui7yl3JajEIaACg8MOUwWvuuwU7jepZqX3BKs1ho7NQRuP4LhN4XIykXhp8bEy+x/DhA0LBZZXYSCkZDqrwMMg=="; + url = "https://registry.npmjs.org/engine.io/-/engine.io-6.0.1.tgz"; + sha512 = "Y53UaciUh2Rmx5MiogtMxOQcfh7pnemday+Bb4QDg0Wjmnvo/VTvuEyNGQgYmh8L7VOe8Je1QuiqjLNDelMqLA=="; }; }; "engine.io-client-1.3.1" = { @@ -24047,6 +24767,15 @@ let sha512 = "VHZ8gX+EDfz+97jGcgyGCyRia/dPOd6Xh9yPv8Bl1+SoaIwD+a/vlrOmGRUyOYu7MwUhc7CxqeaDZU13S4+EpA=="; }; }; + "eslint-formatter-pretty-4.1.0" = { + name = "eslint-formatter-pretty"; + packageName = "eslint-formatter-pretty"; + version = "4.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/eslint-formatter-pretty/-/eslint-formatter-pretty-4.1.0.tgz"; + sha512 = "IsUTtGxF1hrH6lMWiSl1WbGaiP01eT6kzywdY1U+zLc0MP+nwEnUiS9UI8IaOTUhTeQJLlCEWIbXINBH4YJbBQ=="; + }; + }; "eslint-plugin-no-unsanitized-3.1.5" = { name = "eslint-plugin-no-unsanitized"; packageName = "eslint-plugin-no-unsanitized"; @@ -24074,6 +24803,15 @@ let sha512 = "oVNDqzBC9h3GO+NTgWeLMhhGigy6/bQaQbHS+0z7C4YEu/qK/yxHvca/2PTZtGNPsCrHwOTgKMrwu02A9iPBmw=="; }; }; + "eslint-rule-docs-1.1.231" = { + name = "eslint-rule-docs"; + packageName = "eslint-rule-docs"; + version = "1.1.231"; + src = fetchurl { + url = "https://registry.npmjs.org/eslint-rule-docs/-/eslint-rule-docs-1.1.231.tgz"; + sha512 = "egHz9A1WG7b8CS0x1P6P/Rj5FqZOjray/VjpJa14tMZalfRKvpE2ONJ3plCM7+PcinmU4tcmbPLv0VtwzSdLVA=="; + }; + }; "eslint-scope-3.7.3" = { name = "eslint-scope"; packageName = "eslint-scope"; @@ -24164,6 +24902,15 @@ let sha512 = "mJOZa35trBTb3IyRmo8xmKBZlxf+N7OnUl4+ZhJHs/r+0770Wh/LEACE2pqMGMe27G/4y8P2bYGk4J70IC5k1Q=="; }; }; + "eslint-visitor-keys-3.1.0" = { + name = "eslint-visitor-keys"; + packageName = "eslint-visitor-keys"; + version = "3.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/eslint-visitor-keys/-/eslint-visitor-keys-3.1.0.tgz"; + sha512 = "yWJFpu4DtjsWKkt5GeNBBuZMlNcYVs6vRCLoCVEJrTjaSB6LC98gFipNK/erM2Heg/E8mIK+hXG/pJMLK+eRZA=="; + }; + }; "esmangle-1.0.1" = { name = "esmangle"; packageName = "esmangle"; @@ -25001,13 +25748,13 @@ let sha1 = "a793d3ac0cad4c6ab571e9968fbbab6cb2532929"; }; }; - "expo-pwa-0.0.101" = { + "expo-pwa-0.0.102" = { name = "expo-pwa"; packageName = "expo-pwa"; - version = "0.0.101"; + version = "0.0.102"; src = fetchurl { - url = "https://registry.npmjs.org/expo-pwa/-/expo-pwa-0.0.101.tgz"; - sha512 = "VuePnFnyHWUfb4D0axkvRmRHeGzznDY5EBxqhQG7MLa7M+d3gtpjmJ2tkkVBg7gtTvaU9OdELT71ayKy8Itftg=="; + url = "https://registry.npmjs.org/expo-pwa/-/expo-pwa-0.0.102.tgz"; + sha512 = "8vqf+hXpQhzDvEj0Wxx3bD4ZtZTU200F4qGO7QFv16Ji5yGPYgb7bAPokUU5v2DF6q0gsDgEF0WtqCU67lScgQ=="; }; }; "express-2.5.11" = { @@ -25028,6 +25775,15 @@ let sha1 = "0b63ae626c96b71b78d13dfce079c10351635a86"; }; }; + "express-4.16.3" = { + name = "express"; + packageName = "express"; + version = "4.16.3"; + src = fetchurl { + url = "https://registry.npmjs.org/express/-/express-4.16.3.tgz"; + sha1 = "6af8a502350db3246ecc4becf6b5a34d22f7ed53"; + }; + }; "express-4.16.4" = { name = "express"; packageName = "express"; @@ -25721,6 +26477,15 @@ let sha512 = "CJ0HCB5tL5fYTEA7ToAq5+kTwd++Borf1/bifxd9iT70QcXr4MRrO3Llf8Ifs70q+SJcGHFtnIE/Nw6giCtECA=="; }; }; + "fault-2.0.1" = { + name = "fault"; + packageName = "fault"; + version = "2.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/fault/-/fault-2.0.1.tgz"; + sha512 = "WtySTkS4OKev5JtpHXnib4Gxiurzh5NCGvWrFaZ34m6JehfTUhKZvn9njTfw48t6JumVQOmrKqpmGcdwxnhqBQ=="; + }; + }; "faunadb-4.4.1" = { name = "faunadb"; packageName = "faunadb"; @@ -26567,13 +27332,13 @@ let sha512 = "r5wGx7YeOwNWNlCA0wQ86zKyDLMQr+/RB8xy74M4hTphfmjlijTSSXGuH8rnvKZnfT9i+75zmd8jcKdMR4O6jA=="; }; }; - "flatted-3.2.2" = { + "flatted-3.2.4" = { name = "flatted"; packageName = "flatted"; - version = "3.2.2"; + version = "3.2.4"; src = fetchurl { - url = "https://registry.npmjs.org/flatted/-/flatted-3.2.2.tgz"; - sha512 = "JaTY/wtrcSyvXJl4IMFHPKyFur1sE9AUqc0QnhOaJ0CxHtAoIV8pYDzeEfAaNEtGkOfq4gr3LBFmdXW5mOQFnA=="; + url = "https://registry.npmjs.org/flatted/-/flatted-3.2.4.tgz"; + sha512 = "8/sOawo8tJ4QOBX8YlQBMxL8+RLZfxMQOif9o0KUKTNTjMYElWPE0r/m5VNFxTRd0NSw8qSy8dajrwX4RYI1Hw=="; }; }; "flatten-0.0.1" = { @@ -26603,13 +27368,13 @@ let sha512 = "jlbUu0XkbpXeXhan5xyTqVK1jmEKNxE8hpzznI3TThHTr76GiFwK0iRzhDo4KNy+S9h/KxHaqVhTP86vA6wHCg=="; }; }; - "flow-parser-0.163.0" = { + "flow-parser-0.164.0" = { name = "flow-parser"; packageName = "flow-parser"; - version = "0.163.0"; + version = "0.164.0"; src = fetchurl { - url = "https://registry.npmjs.org/flow-parser/-/flow-parser-0.163.0.tgz"; - sha512 = "txOsBcZ1nKsKtoAsBFnArFdq0cnPCmEHI5S2jQIgU1ZO1xtWpg64TsZSRktsaOyoWLpAvVxPap4Qbdd/TCJ3FQ=="; + url = "https://registry.npmjs.org/flow-parser/-/flow-parser-0.164.0.tgz"; + sha512 = "aJWAhnazcz0o8xIbCW5LBTf+tnsAtLwaMSCcRqA15UTkPBY1Vq1vy1WEPKwcWsve5tos5kkOeCXgd/Nal+LUUQ=="; }; }; "fluent-ffmpeg-2.1.2" = { @@ -27026,13 +27791,13 @@ let sha512 = "OqlwJq1BdpB83BZXTqI+dNcA6uYk6qk4u9Cgnt64Y+XS7dwdbp/mobx8S2KXf2AXH+scNmA/UVK3SEFHR3vHZA=="; }; }; - "fraction.js-4.1.1" = { + "fraction.js-4.1.2" = { name = "fraction.js"; packageName = "fraction.js"; - version = "4.1.1"; + version = "4.1.2"; src = fetchurl { - url = "https://registry.npmjs.org/fraction.js/-/fraction.js-4.1.1.tgz"; - sha512 = "MHOhvvxHTfRFpF1geTK9czMIZ6xclsEor2wkIGYYq+PxcQqT7vStJqjhe6S1TenZrMZzo+wlqOufBDVepUEgPg=="; + url = "https://registry.npmjs.org/fraction.js/-/fraction.js-4.1.2.tgz"; + sha512 = "o2RiJQ6DZaR/5+Si0qJUIy637QMRudSi9kU/FFzx9EZazrIdnBgpU+3sEWCxAVhH2RtxW2Oz+T4p2o8uOPVcgA=="; }; }; "fragment-cache-0.2.1" = { @@ -27548,31 +28313,31 @@ let sha1 = "cbed2d20a40c1f5679a35908e2b9415733e78db9"; }; }; - "gatsby-core-utils-3.1.0" = { + "gatsby-core-utils-3.1.2" = { name = "gatsby-core-utils"; packageName = "gatsby-core-utils"; - version = "3.1.0"; + version = "3.1.2"; src = fetchurl { - url = "https://registry.npmjs.org/gatsby-core-utils/-/gatsby-core-utils-3.1.0.tgz"; - sha512 = "ErgJr5xgjUoorhCVeyMyNfnZhxBTA33KRB/aFtFWNeTXFsUNlDZBqheSp2XAaD3+gvAmDqbz2m+jKF1sI8vLAg=="; + url = "https://registry.npmjs.org/gatsby-core-utils/-/gatsby-core-utils-3.1.2.tgz"; + sha512 = "l3LUdGNDlM3fLrdxRUGnsd/Szu9e8yLEL/pZIV2LuhTHMNwjOStiycEQivezsUhHNPobep1r5t4yWzP6r2cw/Q=="; }; }; - "gatsby-recipes-1.1.0" = { + "gatsby-recipes-1.1.2" = { name = "gatsby-recipes"; packageName = "gatsby-recipes"; - version = "1.1.0"; + version = "1.1.2"; src = fetchurl { - url = "https://registry.npmjs.org/gatsby-recipes/-/gatsby-recipes-1.1.0.tgz"; - sha512 = "9eRkQSZZK574J7Wg8nrt1MKrcoZ63sfMVk6MXAnipBTxb+YCzSfkTWmNC81HxVeHbsVB2XcVnSQGEb/Ho2m4MQ=="; + url = "https://registry.npmjs.org/gatsby-recipes/-/gatsby-recipes-1.1.2.tgz"; + sha512 = "r6FSPM2eKH+rlC6JX0SgVYBFxBXJW5J/MwFtsP8N+C6Yvr7Cosi9OlMreMx/SBza4HYMXxIoDBYvX68qbBQrhg=="; }; }; - "gatsby-telemetry-3.1.0" = { + "gatsby-telemetry-3.1.2" = { name = "gatsby-telemetry"; packageName = "gatsby-telemetry"; - version = "3.1.0"; + version = "3.1.2"; src = fetchurl { - url = "https://registry.npmjs.org/gatsby-telemetry/-/gatsby-telemetry-3.1.0.tgz"; - sha512 = "XoKh80BROhmtqbFXDhKxr66vYqxt23PfANqUhyFugHFfW+ETx33kTOS8t9IY23icrsqoo780vcx0nVFRjidWEg=="; + url = "https://registry.npmjs.org/gatsby-telemetry/-/gatsby-telemetry-3.1.2.tgz"; + sha512 = "uz8J+cGkQ1vgIc5BCrR5Jm/cF/kKF+Ys+tqXofn4ah95ezT94U+g+m3FPPB49cut7H4OZsONCXeLyLRzdIx7EQ=="; }; }; "gauge-1.2.7" = { @@ -27692,6 +28457,15 @@ let sha1 = "9c0e1c40308ce804f4783618b937fa88f99d50d0"; }; }; + "gensequence-3.1.1" = { + name = "gensequence"; + packageName = "gensequence"; + version = "3.1.1"; + src = fetchurl { + url = "https://registry.npmjs.org/gensequence/-/gensequence-3.1.1.tgz"; + sha512 = "ys3h0hiteRwmY6BsvSttPmkhC0vEQHPJduANBRtH/dlDPZ0UBIb/dXy80IcckXyuQ6LKg+PloRqvGER9IS7F7g=="; + }; + }; "gensync-1.0.0-beta.2" = { name = "gensync"; packageName = "gensync"; @@ -28187,6 +28961,15 @@ let sha1 = "f985fedcc0a9aa579dc88d7aff068d55cc6251a0"; }; }; + "github-url-to-object-4.0.6" = { + name = "github-url-to-object"; + packageName = "github-url-to-object"; + version = "4.0.6"; + src = fetchurl { + url = "https://registry.npmjs.org/github-url-to-object/-/github-url-to-object-4.0.6.tgz"; + sha512 = "NaqbYHMUAlPcmWFdrAB7bcxrNIiiJWJe8s/2+iOc9vlcHlwHqSGrPk+Yi3nu6ebTwgsZEa7igz+NH2vEq3gYwQ=="; + }; + }; "github-username-6.0.0" = { name = "github-username"; packageName = "github-username"; @@ -28304,6 +29087,15 @@ let sha1 = "dbb164f6221b1c0b1ccf82aea328b497df0ea3c4"; }; }; + "glob-option-error-1.0.0" = { + name = "glob-option-error"; + packageName = "glob-option-error"; + version = "1.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/glob-option-error/-/glob-option-error-1.0.0.tgz"; + sha1 = "57cc65def9c7d5c1461baf13129bb5403cff6176"; + }; + }; "glob-parent-2.0.0" = { name = "glob-parent"; packageName = "glob-parent"; @@ -28719,6 +29511,15 @@ let sha512 = "GWQgk3aaev6LVJbaRHZVWKSE7l+mAkcN9dMwdWgC1LU36CdA7Z/5n2LmdZvkmi2M47+Eog3/4rQfnK1r1I0vQA=="; }; }; + "goldengate-10.4.1" = { + name = "goldengate"; + packageName = "goldengate"; + version = "10.4.1"; + src = fetchurl { + url = "https://registry.npmjs.org/goldengate/-/goldengate-10.4.1.tgz"; + sha512 = "X3jniV7yV5gG9aOKgKHqflyGmOaNDm1xLfnUdhzRAqlhW7P0vj7VT3v3bm2vfy7ciG53FxW7SMDV9nZBvTyYvg=="; + }; + }; "gonzales-pe-4.3.0" = { name = "gonzales-pe"; packageName = "gonzales-pe"; @@ -28737,13 +29538,13 @@ let sha512 = "Q+ZjUEvLQj/lrVHF/IQwRo6p3s8Nc44Zk/DALsN+ac3T4HY/g/3rrufkgtl+nZ1TW7DNAw5cTChdVp4apUXVgQ=="; }; }; - "google-auth-library-7.10.1" = { + "google-auth-library-7.10.2" = { name = "google-auth-library"; packageName = "google-auth-library"; - version = "7.10.1"; + version = "7.10.2"; src = fetchurl { - url = "https://registry.npmjs.org/google-auth-library/-/google-auth-library-7.10.1.tgz"; - sha512 = "nQxgM1ZopUMcpMnu95kOSzI+9tJl4YDOZJomSTBGlRLpxfBopdwto7WvzoI87HuN0nQqVETgOsHi/C/po1rppA=="; + url = "https://registry.npmjs.org/google-auth-library/-/google-auth-library-7.10.2.tgz"; + sha512 = "M37o9Kxa/TLvOLgF71SXvLeVEP5sbSTmKl1zlIgl72SFy5PtsU3pOdu8G8MIHHpQ3/NZabDI8rQkA9DvQVKkPA=="; }; }; "google-closure-compiler-js-20170910.0.1" = { @@ -28755,13 +29556,13 @@ let sha512 = "Vric7QFWxzHFxITZ10bmlG1H/5rhODb7hJuWyKWMD8GflpQzRmbMVqkFp3fKvN+U9tPwZItGVhkiOR+84PX3ew=="; }; }; - "google-gax-2.28.0" = { + "google-gax-2.28.1" = { name = "google-gax"; packageName = "google-gax"; - version = "2.28.0"; + version = "2.28.1"; src = fetchurl { - url = "https://registry.npmjs.org/google-gax/-/google-gax-2.28.0.tgz"; - sha512 = "kuqc8a4+CTCMBcF3tlOL7Sa74JWkTzcZxatAQTCVK35WToXkHnJ0qncFOJuegUv3EbV9IQY4j/+NZdFLv+lbTA=="; + url = "https://registry.npmjs.org/google-gax/-/google-gax-2.28.1.tgz"; + sha512 = "2Xjd3FrjlVd6Cmw2B2Aicpc/q92SwTpIOvxPUlnRg9w+Do8nu7UR+eQrgoKlo2FIUcUuDTvppvcx8toND0pK9g=="; }; }; "google-p12-pem-3.1.2" = { @@ -29007,6 +29808,15 @@ let sha512 = "GTCJtzJmkFLWRfFJuoo9RWWa/FfamUHgiFosxi/X1Ani4AVWbeyBenZTNX6dM+7WSbbFfTo/25eh0LLkwHMw2w=="; }; }; + "graphql-15.4.0" = { + name = "graphql"; + packageName = "graphql"; + version = "15.4.0"; + src = fetchurl { + url = "https://registry.npmjs.org/graphql/-/graphql-15.4.0.tgz"; + sha512 = "EB3zgGchcabbsU9cFe1j+yxdzKQKAbGUWRb13DsrsMN1yyfmmIq+2+L5MqVWcDCE4V89R5AyUOi7sMOGxdsYtA=="; + }; + }; "graphql-15.7.2" = { name = "graphql"; packageName = "graphql"; @@ -29043,6 +29853,51 @@ let sha512 = "bVddVO8YFJPwuACn+3pgmrEg6I8iBuYLuwvxiE+lcQQ7POotVZxm2rgGw0PvVYmWWf3DT7nTVDZ5ROh/ALp8mA=="; }; }; + "graphql-language-service-interface-2.9.1" = { + name = "graphql-language-service-interface"; + packageName = "graphql-language-service-interface"; + version = "2.9.1"; + src = fetchurl { + url = "https://registry.npmjs.org/graphql-language-service-interface/-/graphql-language-service-interface-2.9.1.tgz"; + sha512 = "yGsE67fxJBXxY82+rLDMvUpmzpOUM8XFB+k+xOTUyABWs27osKaoGiuDDXAVGg1adhm+cpunWbipe763ZJkAVA=="; + }; + }; + "graphql-language-service-parser-1.10.0" = { + name = "graphql-language-service-parser"; + packageName = "graphql-language-service-parser"; + version = "1.10.0"; + src = fetchurl { + url = "https://registry.npmjs.org/graphql-language-service-parser/-/graphql-language-service-parser-1.10.0.tgz"; + sha512 = "cLExv0EjqT2hsKdwVTPmKU6eMfjZAjxqywgCPnWD48eJn6tyuePMyG7ye+jpX1PRPPx/cDHfFJGf8sUclchvng=="; + }; + }; + "graphql-language-service-types-1.8.3" = { + name = "graphql-language-service-types"; + packageName = "graphql-language-service-types"; + version = "1.8.3"; + src = fetchurl { + url = "https://registry.npmjs.org/graphql-language-service-types/-/graphql-language-service-types-1.8.3.tgz"; + sha512 = "m+RHnlGkKDcesW/gC4M7I2pSmWJB84uWS6LtnjplO/07JN312nJCJYCwV/DBny2m1fmSOxN7H/o+JW0l56KwBA=="; + }; + }; + "graphql-language-service-utils-2.5.1" = { + name = "graphql-language-service-utils"; + packageName = "graphql-language-service-utils"; + version = "2.5.1"; + src = fetchurl { + url = "https://registry.npmjs.org/graphql-language-service-utils/-/graphql-language-service-utils-2.5.1.tgz"; + sha512 = "Lzz723cYrYlVN4WVzIyFGg3ogoe+QYAIBfdtDboiIILoy0FTmqbyC2TOErqbmWKqO4NK9xDA95cSRFbWiHYj0g=="; + }; + }; + "graphql-language-service-utils-2.6.0" = { + name = "graphql-language-service-utils"; + packageName = "graphql-language-service-utils"; + version = "2.6.0"; + src = fetchurl { + url = "https://registry.npmjs.org/graphql-language-service-utils/-/graphql-language-service-utils-2.6.0.tgz"; + sha512 = "idqwmbREixhDuQMcYp8WH0btQT02xZny8MO/HduNTVjnPrmTYnZUbpZ9AejdflmaKoS0o8nNvgXQ0GpIOzbG5g=="; + }; + }; "graphql-subscriptions-1.2.1" = { name = "graphql-subscriptions"; packageName = "graphql-subscriptions"; @@ -29052,13 +29907,13 @@ let sha512 = "95yD/tKi24q8xYa7Q9rhQN16AYj5wPbrb8tmHGM3WRc9EBmWrG/0kkMl+tQG8wcEuE9ibR4zyOM31p5Sdr2v4g=="; }; }; - "graphql-tag-2.12.5" = { + "graphql-tag-2.12.6" = { name = "graphql-tag"; packageName = "graphql-tag"; - version = "2.12.5"; + version = "2.12.6"; src = fetchurl { - url = "https://registry.npmjs.org/graphql-tag/-/graphql-tag-2.12.5.tgz"; - sha512 = "5xNhP4063d16Pz3HBtKprutsPrmHZi5IdUGOWRxA2B6VF7BIRGOHZ5WQvDmJXZuPcBg7rYwaFxvQYjqkSdR3TQ=="; + url = "https://registry.npmjs.org/graphql-tag/-/graphql-tag-2.12.6.tgz"; + sha512 = "FdSNcu2QQcWnM2VNvSCCDCVS5PpPqpzgFT8+GXzqJuoDd0CBncxCY278u4mhRO7tMgo2JjgJA5aZ+nWSQ/Z+xg=="; }; }; "graphql-tools-3.0.0" = { @@ -29529,6 +30384,15 @@ let sha512 = "EykJT/Q1KjTWctppgIAgfSO0tKVuZUjhgMr17kqTumMl6Afv3EISleU7qZUzoXDFTAHTDC4NOoG/ZxU3EvlMPQ=="; }; }; + "has-flag-5.0.1" = { + name = "has-flag"; + packageName = "has-flag"; + version = "5.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/has-flag/-/has-flag-5.0.1.tgz"; + sha512 = "CsNUt5x9LUdx6hnk/E2SZLsDyvfqANZSUq4+D3D8RzDJ2M+HDTIkF60ibS1vHaK55vzgiZw1bEPFG9yH7l33wA=="; + }; + }; "has-generators-1.0.1" = { name = "has-generators"; packageName = "has-generators"; @@ -29565,6 +30429,15 @@ let sha1 = "3eea7b44caa9601797124be8ba89d228c4101499"; }; }; + "has-own-prop-2.0.0" = { + name = "has-own-prop"; + packageName = "has-own-prop"; + version = "2.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/has-own-prop/-/has-own-prop-2.0.0.tgz"; + sha512 = "Pq0h+hvsVm6dDEa8x82GnLSYHOzNDt7f0ddFa3FqcQlgzEiptPqL+XrOJNavjOzSYiYWIrgeVYYgGlLmnxwilQ=="; + }; + }; "has-symbol-support-x-1.4.2" = { name = "has-symbol-support-x"; packageName = "has-symbol-support-x"; @@ -29736,6 +30609,15 @@ let sha512 = "JQMW+TJe0UAIXZMjCJ4Wf6ayDV9Yv3PBDPsHD4ExBpAspJ6MOcCX+nzVF+UJVv7OqPcg852WEMSHQPoRA+FVSw=="; }; }; + "hast-util-embedded-2.0.0" = { + name = "hast-util-embedded"; + packageName = "hast-util-embedded"; + version = "2.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/hast-util-embedded/-/hast-util-embedded-2.0.0.tgz"; + sha512 = "vEr54rDu2CheBM4nLkWbW8Rycf8HhkA/KsrDnlyKnvBTyhyO+vAG6twHnfUbiRGo56YeUBNCI4HFfHg3Wu+tig=="; + }; + }; "hast-util-from-parse5-5.0.3" = { name = "hast-util-from-parse5"; packageName = "hast-util-from-parse5"; @@ -29754,6 +30636,15 @@ let sha512 = "jeJUWiN5pSxW12Rh01smtVkZgZr33wBokLzKLwinYOUfSzm1Nl/c3GUGebDyOKjdsRgMvoVbV0VpAcpjF4NrJA=="; }; }; + "hast-util-from-parse5-7.1.0" = { + name = "hast-util-from-parse5"; + packageName = "hast-util-from-parse5"; + version = "7.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/hast-util-from-parse5/-/hast-util-from-parse5-7.1.0.tgz"; + sha512 = "m8yhANIAccpU4K6+121KpPP55sSl9/samzQSQGpb0mTExcNh2WlvjtMwSWFhg6uqD4Rr6Nfa8N6TMypQM51rzQ=="; + }; + }; "hast-util-has-property-1.0.4" = { name = "hast-util-has-property"; packageName = "hast-util-has-property"; @@ -29763,6 +30654,15 @@ let sha512 = "ghHup2voGfgFoHMGnaLHOjbYFACKrRh9KFttdCzMCbFoBMJXiNi2+XTrPP8+q6cDJM/RSqlCfVWrjp1H201rZg=="; }; }; + "hast-util-has-property-2.0.0" = { + name = "hast-util-has-property"; + packageName = "hast-util-has-property"; + version = "2.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/hast-util-has-property/-/hast-util-has-property-2.0.0.tgz"; + sha512 = "4Qf++8o5v14us4Muv3HRj+Er6wTNGA/N9uCaZMty4JWvyFKLdhULrv4KE1b65AthsSO9TXSZnjuxS8ecIyhb0w=="; + }; + }; "hast-util-is-body-ok-link-1.0.4" = { name = "hast-util-is-body-ok-link"; packageName = "hast-util-is-body-ok-link"; @@ -29781,6 +30681,15 @@ let sha512 = "oUmNua0bFbdrD/ELDSSEadRVtWZOf3iF6Lbv81naqsIV99RnSCieTbWuWCY8BAeEfKJTKl0gRdokv+dELutHGQ=="; }; }; + "hast-util-is-element-2.1.1" = { + name = "hast-util-is-element"; + packageName = "hast-util-is-element"; + version = "2.1.1"; + src = fetchurl { + url = "https://registry.npmjs.org/hast-util-is-element/-/hast-util-is-element-2.1.1.tgz"; + sha512 = "ag0fiZfRWsPiR1udvnSbaazJLGv8qd8E+/e3rW8rUZhbKG4HNJmFL4QkEceN+22BgE+uozXY30z/s+2dL6Z++g=="; + }; + }; "hast-util-parse-selector-2.2.5" = { name = "hast-util-parse-selector"; packageName = "hast-util-parse-selector"; @@ -29790,6 +30699,15 @@ let sha512 = "7j6mrk/qqkSehsM92wQjdIgWM2/BW61u/53G6xmC8i1OmEdKLHbk419QKQUjz6LglWsfqoiHmyMRkP1BGjecNQ=="; }; }; + "hast-util-parse-selector-3.1.0" = { + name = "hast-util-parse-selector"; + packageName = "hast-util-parse-selector"; + version = "3.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/hast-util-parse-selector/-/hast-util-parse-selector-3.1.0.tgz"; + sha512 = "AyjlI2pTAZEOeu7GeBPZhROx0RHBnydkQIXlhnFzDi0qfXTmGUWoCYZtomHbrdrheV4VFUlPcfJ6LMF5T6sQzg=="; + }; + }; "hast-util-phrasing-1.0.5" = { name = "hast-util-phrasing"; packageName = "hast-util-phrasing"; @@ -29799,6 +30717,15 @@ let sha512 = "P3uxm+8bnwcfAS/XpGie9wMmQXAQqsYhgQQKRwmWH/V6chiq0lmTy8KjQRJmYjusdMtNKGCUksdILSZy1suSpQ=="; }; }; + "hast-util-phrasing-2.0.0" = { + name = "hast-util-phrasing"; + packageName = "hast-util-phrasing"; + version = "2.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/hast-util-phrasing/-/hast-util-phrasing-2.0.0.tgz"; + sha512 = "4rFSiFpdmTtp4aAxki6obpEbVJ85fOEN8/A8bOByoCaqRDTtd1AKTw3P/cXgVm0/RDuaWj0tSd1pTb0Jw5QfdA=="; + }; + }; "hast-util-to-nlcst-1.2.8" = { name = "hast-util-to-nlcst"; packageName = "hast-util-to-nlcst"; @@ -29808,6 +30735,15 @@ let sha512 = "cKMArohUvGw4fpN9PKDCIB+klMojkWzz5zNVNFRdKa0oC1MVX1TaDki1E/tb9xqS8WlUjKifIjmrNmRbEJzrJg=="; }; }; + "hast-util-to-nlcst-2.2.0" = { + name = "hast-util-to-nlcst"; + packageName = "hast-util-to-nlcst"; + version = "2.2.0"; + src = fetchurl { + url = "https://registry.npmjs.org/hast-util-to-nlcst/-/hast-util-to-nlcst-2.2.0.tgz"; + sha512 = "BFBvuoEo9yCHklUSCz6+JG/FAkr+qCVaW1bE0/Y8+SBhuaz7s+suHDpkyQxH7FF2kqctYRhquLRCcmn+PS0IUQ=="; + }; + }; "hast-util-to-string-1.0.4" = { name = "hast-util-to-string"; packageName = "hast-util-to-string"; @@ -29817,6 +30753,15 @@ let sha512 = "eK0MxRX47AV2eZ+Lyr18DCpQgodvaS3fAQO2+b9Two9F5HEoRPhiUMNzoXArMJfZi2yieFzUBMRl3HNJ3Jus3w=="; }; }; + "hast-util-to-string-2.0.0" = { + name = "hast-util-to-string"; + packageName = "hast-util-to-string"; + version = "2.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/hast-util-to-string/-/hast-util-to-string-2.0.0.tgz"; + sha512 = "02AQ3vLhuH3FisaMM+i/9sm4OXGSq1UhOOCpTLLQtHdL3tZt7qil69r8M8iDkZYyC0HCFylcYoP+8IO7ddta1A=="; + }; + }; "hast-util-whitespace-1.0.4" = { name = "hast-util-whitespace"; packageName = "hast-util-whitespace"; @@ -29826,6 +30771,15 @@ let sha512 = "I5GTdSfhYfAPNztx2xJRQpG8cuDSNt599/7YUn7Gx/WxNMsG+a835k97TDkFgk123cwjfwINaZknkKkphx/f2A=="; }; }; + "hast-util-whitespace-2.0.0" = { + name = "hast-util-whitespace"; + packageName = "hast-util-whitespace"; + version = "2.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/hast-util-whitespace/-/hast-util-whitespace-2.0.0.tgz"; + sha512 = "Pkw+xBHuV6xFeJprJe2BBEoDV+AvQySaz3pPDRUs5PNZEMQjpXJJueqrpcHIXxnWTcAGi/UOCgVShlkY6kLoqg=="; + }; + }; "hastscript-5.1.2" = { name = "hastscript"; packageName = "hastscript"; @@ -29844,6 +30798,15 @@ let sha512 = "nDM6bvd7lIqDUiYEiu5Sl/+6ReP0BMk/2f4U/Rooccxkj0P5nm+acM5PrGJ/t5I8qPGiqZSE6hVAwZEdZIvP4w=="; }; }; + "hastscript-7.0.2" = { + name = "hastscript"; + packageName = "hastscript"; + version = "7.0.2"; + src = fetchurl { + url = "https://registry.npmjs.org/hastscript/-/hastscript-7.0.2.tgz"; + sha512 = "uA8ooUY4ipaBvKcMuPehTAB/YfFLSSzCwFSwT6ltJbocFUKH/GDHLN+tflq7lSRf9H86uOuxOFkh1KgIy3Gg2g=="; + }; + }; "hasurl-1.0.0" = { name = "hasurl"; packageName = "hasurl"; @@ -30078,6 +31041,15 @@ let sha1 = "20bb7403d3cea398e91dc4710a8ff1b8274a25ed"; }; }; + "hogan.js-2.0.0" = { + name = "hogan.js"; + packageName = "hogan.js"; + version = "2.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/hogan.js/-/hogan.js-2.0.0.tgz"; + sha1 = "3a5b04186d51737fd2035792d419a9f5a82f9d0e"; + }; + }; "hogan.js-3.0.2" = { name = "hogan.js"; packageName = "hogan.js"; @@ -30492,6 +31464,15 @@ let sha1 = "fa7168944ab9a519d337cb0bec7284dc3e723d87"; }; }; + "http-errors-1.6.2" = { + name = "http-errors"; + packageName = "http-errors"; + version = "1.6.2"; + src = fetchurl { + url = "https://registry.npmjs.org/http-errors/-/http-errors-1.6.2.tgz"; + sha1 = "0a002cc85707192a7e7946ceedc11155f60ec736"; + }; + }; "http-errors-1.6.3" = { name = "http-errors"; packageName = "http-errors"; @@ -30862,13 +31843,13 @@ let sha512 = "xFwOnNlOt8L+SovC7dTNchKaNYJb5l8rKZZwpWQnCme1r7CU4Hlhp1RDqPES6b0OpS7DkTo9iU0GltQGkpsjMw=="; }; }; - "hypercore-crypto-2.3.0" = { + "hypercore-crypto-2.3.2" = { name = "hypercore-crypto"; packageName = "hypercore-crypto"; - version = "2.3.0"; + version = "2.3.2"; src = fetchurl { - url = "https://registry.npmjs.org/hypercore-crypto/-/hypercore-crypto-2.3.0.tgz"; - sha512 = "HdI0VKwPHVIsbkJ2kFot5XRJoQOO1rGg0G2X+Z/mrP8vfZPFD5H1wwJ5nBDp0QYsZfHjOq0nOuUoW/NgdOZofA=="; + url = "https://registry.npmjs.org/hypercore-crypto/-/hypercore-crypto-2.3.2.tgz"; + sha512 = "GzHgVOfr5utdiJG5QNcQZ0oo+/YQNbekpg429x00YpUobBraX2qEL3E+iH/EFEIdCQSiGHfToWyYw+OpznSjww=="; }; }; "hypercore-default-storage-1.1.1" = { @@ -31033,6 +32014,15 @@ let sha512 = "VElMm+LoeEuhViVwnDw1gR3snTItK9NJqgok8PZ5WU870MVO1x+5KEbzLO/6GC1zu42Uc3EuGj3nsGMGMNwT0A=="; }; }; + "iconv-lite-0.4.19" = { + name = "iconv-lite"; + packageName = "iconv-lite"; + version = "0.4.19"; + src = fetchurl { + url = "https://registry.npmjs.org/iconv-lite/-/iconv-lite-0.4.19.tgz"; + sha512 = "oTZqweIP51xaGPI4uPa56/Pri/480R+mo7SeU+YETByQNhDG55ycFyNLIgta9vXhILrxXDmF7ZGhqZIcuN0gJQ=="; + }; + }; "iconv-lite-0.4.23" = { name = "iconv-lite"; packageName = "iconv-lite"; @@ -31150,13 +32140,13 @@ let sha512 = "cyFDKrqc/YdcWFniJhzI42+AzS+gNwmUzOSFcRCQYwySuBBBy/KjuxWLZ/FHEH6Moq1NizMOBWyTcv8O4OZIMg=="; }; }; - "ignore-5.1.8" = { + "ignore-5.1.9" = { name = "ignore"; packageName = "ignore"; - version = "5.1.8"; + version = "5.1.9"; src = fetchurl { - url = "https://registry.npmjs.org/ignore/-/ignore-5.1.8.tgz"; - sha512 = "BMpfD7PpiETpBl/A6S498BaIJ6Y/ABT93ETbby2fP00v4EbvPBXWEoaR1UBPKs3iR53pJY7EtZk5KACI57i1Uw=="; + url = "https://registry.npmjs.org/ignore/-/ignore-5.1.9.tgz"; + sha512 = "2zeMQpbKz5dhZ9IwL0gbxSW5w0NK/MSAMtNuhgIHEPmaU3vPdKPL0UdvUCXs5SS4JAwsBxysK5sFMW8ocFiVjQ=="; }; }; "ignore-by-default-1.0.1" = { @@ -31177,6 +32167,15 @@ let sha512 = "PY6Ii8o1jMRA1z4F2hRkH/xN59ox43DavKvD3oDpfurRlOJyAHpifIwpbdv1n4jt4ov0jSpw3kQ4GhJnpBL6WQ=="; }; }; + "ignore-walk-4.0.1" = { + name = "ignore-walk"; + packageName = "ignore-walk"; + version = "4.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/ignore-walk/-/ignore-walk-4.0.1.tgz"; + sha512 = "rzDQLaW4jQbh2YrOFlJdCtX8qgJTehFRYiUB2r1osqTeDzV/3+Jh8fz1oAPzUThf3iku8Ds4IDqawI5d8mUiQw=="; + }; + }; "image-data-uri-2.0.1" = { name = "image-data-uri"; packageName = "image-data-uri"; @@ -31411,6 +32410,15 @@ let sha512 = "bE9iaUY3CXH8Cwfan/abDKAxe1KGT9kyGsBPqf6DMK/z0a2OzAsrukeYNgIH6cH5Xr452jb1TUL8rSfCLjZ9uA=="; }; }; + "import-meta-resolve-1.1.1" = { + name = "import-meta-resolve"; + packageName = "import-meta-resolve"; + version = "1.1.1"; + src = fetchurl { + url = "https://registry.npmjs.org/import-meta-resolve/-/import-meta-resolve-1.1.1.tgz"; + sha512 = "JiTuIvVyPaUg11eTrNDx5bgQ/yMKMZffc7YSjvQeSMXy58DO2SQ8BtAf3xteZvmzvjYh14wnqNjL8XVeDy2o9A=="; + }; + }; "imurmurhash-0.1.4" = { name = "imurmurhash"; packageName = "imurmurhash"; @@ -31474,6 +32482,15 @@ let sha512 = "m6FAo/spmsW2Ab2fU35JTYwtOKa2yAwXSwgjSv1TJzh4Mh7mC3lzAOVLBprb72XsTrgkEIsl7YrFNAiDiRhIGg=="; }; }; + "indexed-filter-1.0.3" = { + name = "indexed-filter"; + packageName = "indexed-filter"; + version = "1.0.3"; + src = fetchurl { + url = "https://registry.npmjs.org/indexed-filter/-/indexed-filter-1.0.3.tgz"; + sha512 = "oBIzs6EARNMzrLgVg20fK52H19WcRHBiukiiEkw9rnnI//8rinEBMLrYdwEfJ9d4K7bjV1L6nSGft6H/qzHNgQ=="; + }; + }; "indexes-of-1.0.1" = { name = "indexes-of"; packageName = "indexes-of"; @@ -32302,6 +33319,15 @@ let sha512 = "Y75zBYLkh0lJ9qxeHlMjQ7bSbyiSqNW/UOPWDmzC7cXskL1hekSITh1Oc6JV0XCWWZ9DE8VYSB71xocLk3gmGw=="; }; }; + "irregular-plurals-3.3.0" = { + name = "irregular-plurals"; + packageName = "irregular-plurals"; + version = "3.3.0"; + src = fetchurl { + url = "https://registry.npmjs.org/irregular-plurals/-/irregular-plurals-3.3.0.tgz"; + sha512 = "MVBLKUTangM3EfRPFROhmWQQKRDsrgI83J8GS3jXy+OwYqiR2/aoWndYQ5416jLE3uaGgLH7ncme3X9y09gZ3g=="; + }; + }; "is-3.3.0" = { name = "is"; packageName = "is"; @@ -32383,13 +33409,13 @@ let sha512 = "DwzsA04LQ10FHTZuL0/grVDk4rFoVH1pjAToYwBrHSxcrBIGQuXrQMtD5U1b0U2XVgKZCTLLP8u2Qxqhy3l2Vg=="; }; }; - "is-alphabetical-2.0.0" = { + "is-alphabetical-2.0.1" = { name = "is-alphabetical"; packageName = "is-alphabetical"; - version = "2.0.0"; + version = "2.0.1"; src = fetchurl { - url = "https://registry.npmjs.org/is-alphabetical/-/is-alphabetical-2.0.0.tgz"; - sha512 = "5OV8Toyq3oh4eq6sbWTYzlGdnMT/DPI5I0zxUBxjiigQsZycpkKF3kskkao3JyYGuYDHvhgJF+DrjMQp9SX86w=="; + url = "https://registry.npmjs.org/is-alphabetical/-/is-alphabetical-2.0.1.tgz"; + sha512 = "FWyyY60MeTNyeSRpkM2Iry0G9hpr7/9kD40mD/cGQEuilcZYS4okz8SN2Q6rLCJ8gbCt6fN+rC+6tMGS99LaxQ=="; }; }; "is-alphanumeric-1.0.0" = { @@ -32410,13 +33436,13 @@ let sha512 = "UzoZUr+XfVz3t3v4KyGEniVL9BDRoQtY7tOyrRybkVNjDFWyo1yhXNGrrBTQxp3ib9BLAWs7k2YKBQsFRkZG9A=="; }; }; - "is-alphanumerical-2.0.0" = { + "is-alphanumerical-2.0.1" = { name = "is-alphanumerical"; packageName = "is-alphanumerical"; - version = "2.0.0"; + version = "2.0.1"; src = fetchurl { - url = "https://registry.npmjs.org/is-alphanumerical/-/is-alphanumerical-2.0.0.tgz"; - sha512 = "t+2GlJ+hO9yagJ+jU3+HSh80VKvz/3cG2cxbGGm4S0hjKuhWQXgPVUVOZz3tqZzMjhmphZ+1TIJTlRZRoe6GCQ=="; + url = "https://registry.npmjs.org/is-alphanumerical/-/is-alphanumerical-2.0.1.tgz"; + sha512 = "hmbYhX/9MUMF5uh7tOXyK/n0ZvWpad5caBA17GsC6vyuCqaWliRG5K1qS9inmUhEMaOBIW7/whAnSwveW/LtZw=="; }; }; "is-arguments-1.1.1" = { @@ -32608,13 +33634,13 @@ let sha512 = "RGdriMmQQvZ2aqaQq3awNA6dCGtKpiDFcOzrTWrDAT2MiWrKQVPmxLGHl7Y2nNu6led0kEyoX0enY0qXYsv9zw=="; }; }; - "is-decimal-2.0.0" = { + "is-decimal-2.0.1" = { name = "is-decimal"; packageName = "is-decimal"; - version = "2.0.0"; + version = "2.0.1"; src = fetchurl { - url = "https://registry.npmjs.org/is-decimal/-/is-decimal-2.0.0.tgz"; - sha512 = "QfrfjQV0LjoWQ1K1XSoEZkTAzSa14RKVMa5zg3SdAfzEmQzRM4+tbSFWb78creCeA9rNBzaZal92opi1TwPWZw=="; + url = "https://registry.npmjs.org/is-decimal/-/is-decimal-2.0.1.tgz"; + sha512 = "AAB9hiomQs5DXWcRB1rqsxGUstbRroFOPPVAomNk/3XHR5JyEZChOyTWe2oayKnsSsr/kcGqF+z6yuH6HHpN0A=="; }; }; "is-deflate-1.0.0" = { @@ -32833,6 +33859,15 @@ let sha512 = "jsEjy9l3yiXEQ+PsXdmBwEPcOxaXWLspKdplFUVI9vq1iZgIekeC0L167qeu86czQaxed3q/Uzuw0swL0irL8A=="; }; }; + "is-github-url-1.2.2" = { + name = "is-github-url"; + packageName = "is-github-url"; + version = "1.2.2"; + src = fetchurl { + url = "https://registry.npmjs.org/is-github-url/-/is-github-url-1.2.2.tgz"; + sha1 = "0734176092c9599a38a72422d121ff3e11d6ff3e"; + }; + }; "is-glob-2.0.1" = { name = "is-glob"; packageName = "is-glob"; @@ -32896,13 +33931,13 @@ let sha512 = "gyPJuv83bHMpocVYoqof5VDiZveEoGoFL8m3BXNb2VW8Xs+rz9kqO8LOQ5DH6EsuvilT1ApazU0pyl+ytbPtlw=="; }; }; - "is-hexadecimal-2.0.0" = { + "is-hexadecimal-2.0.1" = { name = "is-hexadecimal"; packageName = "is-hexadecimal"; - version = "2.0.0"; + version = "2.0.1"; src = fetchurl { - url = "https://registry.npmjs.org/is-hexadecimal/-/is-hexadecimal-2.0.0.tgz"; - sha512 = "vGOtYkiaxwIiR0+Ng/zNId+ZZehGfINwTzdrDqc6iubbnQWhnPuYymOzOKUDqa2cSl59yHnEh2h6MvRLQsyNug=="; + url = "https://registry.npmjs.org/is-hexadecimal/-/is-hexadecimal-2.0.1.tgz"; + sha512 = "DgZQp241c8oO6cA1SbTEWiXeoxV42vlcJxgH+B3hi1AiqqKruZR3ZGF8In3fj4+/y/7rHvlOZLZtgJ/4ttYGZg=="; }; }; "is-hidden-1.1.3" = { @@ -32959,6 +33994,15 @@ let sha512 = "2HvIEKRoqS62guEC+qBjpvRubdX910WCMuJTZ+I9yvqKU2/12eSL549HMwtabb4oupdj2sMP50k+XJfB/8JE6w=="; }; }; + "is-interactive-2.0.0" = { + name = "is-interactive"; + packageName = "is-interactive"; + version = "2.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/is-interactive/-/is-interactive-2.0.0.tgz"; + sha512 = "qP1vozQRI+BMOPcjFzrjXuQvdak2pHNUMZoeG2eRbiSqyvbEf/wQtEOTOX1guk6E3t36RkaqiSt8A/6YElNxLQ=="; + }; + }; "is-invalid-path-0.1.0" = { name = "is-invalid-path"; packageName = "is-invalid-path"; @@ -33022,13 +34066,13 @@ let sha512 = "gmh/eWXROncUzRnIa1Ubrt5b8ep/MGSnfAUI3aRp+sqTCs1tv1Isl8d8F6JmkN3dXKc3ehZMrtiPN9eL03NuaQ=="; }; }; - "is-my-json-valid-2.20.5" = { + "is-my-json-valid-2.20.6" = { name = "is-my-json-valid"; packageName = "is-my-json-valid"; - version = "2.20.5"; + version = "2.20.6"; src = fetchurl { - url = "https://registry.npmjs.org/is-my-json-valid/-/is-my-json-valid-2.20.5.tgz"; - sha512 = "VTPuvvGQtxvCeghwspQu1rBgjYUT6FGxPlvFKbYuFtgc4ADsX3U5ihZOYN0qyU6u+d4X9xXb0IT5O6QpXKt87A=="; + url = "https://registry.npmjs.org/is-my-json-valid/-/is-my-json-valid-2.20.6.tgz"; + sha512 = "1JQwulVNjx8UqkPE/bqDaxtH4PXCe/2VRh/y3p99heOV87HG4Id5/VfDswd+YiAfHcRTfDlWgISycnHuhZq1aw=="; }; }; "is-natural-number-4.0.1" = { @@ -33283,6 +34327,15 @@ let sha512 = "gwsOE28k+23GP1B6vFl1oVh/WOzmawBrKwo5Ev6wMKzPkaXaCDIQKzLnvsA42DRlbVTWorkgTKIviAKCWkfUwA=="; }; }; + "is-plain-obj-4.0.0" = { + name = "is-plain-obj"; + packageName = "is-plain-obj"; + version = "4.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/is-plain-obj/-/is-plain-obj-4.0.0.tgz"; + sha512 = "NXRbBtUdBioI73y/HmOhogw/U5msYPC9DAtGkJXeFcFWSFZw0mCUsPxk/snTuJHzNKA8kLBK4rH97RMB1BfCXw=="; + }; + }; "is-plain-object-2.0.4" = { name = "is-plain-object"; packageName = "is-plain-object"; @@ -33634,6 +34687,15 @@ let sha512 = "knxG2q4UC3u8stRGyAVJCOdxFmv5DZiRcdlIaAQXAbSfJya+OhopNotLQrstBhququ4ZpuKbDc/8S6mgXgPFPw=="; }; }; + "is-unicode-supported-1.1.0" = { + name = "is-unicode-supported"; + packageName = "is-unicode-supported"; + version = "1.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/is-unicode-supported/-/is-unicode-supported-1.1.0.tgz"; + sha512 = "lDcxivp8TJpLG75/DpatAqNzOpDPSpED8XNtrpBHTdQ2InQ1PbW78jhwSxyxhhu+xbVSast2X38bwj8atwoUQA=="; + }; + }; "is-url-1.2.4" = { name = "is-url"; packageName = "is-url"; @@ -33670,13 +34732,13 @@ let sha512 = "Yd9oD7sgCycVvH8CHy5U4fLXibPwxVw2+diudYbT8ZfAiQDtW1H9WvPRR4+rtN9qOll+r+KAfO4SjO28OPpitA=="; }; }; - "is-valid-domain-0.1.2" = { + "is-valid-domain-0.1.4" = { name = "is-valid-domain"; packageName = "is-valid-domain"; - version = "0.1.2"; + version = "0.1.4"; src = fetchurl { - url = "https://registry.npmjs.org/is-valid-domain/-/is-valid-domain-0.1.2.tgz"; - sha512 = "vm/9Ynw80MusgfSMffjGRuMhO8hjk5MOxLoFL7nYWvWXTPCxTGQtACiCwO055UqHICG8xP6hIvRXK1iwnuU9GA=="; + url = "https://registry.npmjs.org/is-valid-domain/-/is-valid-domain-0.1.4.tgz"; + sha512 = "Caa6rwGze6pihA29wy3T1yNXzd53caGHvL0OfJ8RLtv0tVVzVZGlxFcQ0W8kls/uG0QUrv2B3J9xi/YB5/cfUQ=="; }; }; "is-valid-glob-1.0.0" = { @@ -33940,6 +35002,15 @@ let sha1 = "611ae1acf14f5e81f729507472819fe9733558a9"; }; }; + "isomorphic-fetch-3.0.0" = { + name = "isomorphic-fetch"; + packageName = "isomorphic-fetch"; + version = "3.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/isomorphic-fetch/-/isomorphic-fetch-3.0.0.tgz"; + sha512 = "qvUtwJ3j6qwsF3jLxkZ72qCgjMysPzDfeV240JHiGZsANBYd+EEuu35v7dfrJ9Up0Ak07D7GGSkGhCHTqg/5wA=="; + }; + }; "isomorphic-git-0.78.5" = { name = "isomorphic-git"; packageName = "isomorphic-git"; @@ -34679,13 +35750,13 @@ let sha512 = "M+opnlcNb1Ne5igms/OJn/e2ZyQgcCwmqqljuOsHXBMFm7vMOVLSjEUcBYcW7ifJeM1+XYg8+wfuAoZhqY1zCg=="; }; }; - "jsii-1.42.0" = { + "jsii-1.43.0" = { name = "jsii"; packageName = "jsii"; - version = "1.42.0"; + version = "1.43.0"; src = fetchurl { - url = "https://registry.npmjs.org/jsii/-/jsii-1.42.0.tgz"; - sha512 = "Ctbaudn3t3wJ3ihsgCLuEjQGM5CfZl1PJDXfOlELUV6ELwTbvT3TCbyVdt/CCWTOObigQR8OftAB3jl7ymqd3w=="; + url = "https://registry.npmjs.org/jsii/-/jsii-1.43.0.tgz"; + sha512 = "2GsSiwbX++/f6BE/fnT9s0iBQtT+MSsnFBZdpyw4sV50gEg9gbD1rPO/ewSLuUh83mrztPtdiurxsBpYGj17Nw=="; }; }; "jsii-pacmak-1.37.0" = { @@ -34697,40 +35768,40 @@ let sha512 = "cXLXAOyCqd/QNBy+OfcmMgj8UdNVbJJsKoM/C3SvRgdi+fpQlxh1iDTOcKUwd3/QgMuDMDLvKCCpLmq/YRjreA=="; }; }; - "jsii-pacmak-1.42.0" = { + "jsii-pacmak-1.43.0" = { name = "jsii-pacmak"; packageName = "jsii-pacmak"; - version = "1.42.0"; + version = "1.43.0"; src = fetchurl { - url = "https://registry.npmjs.org/jsii-pacmak/-/jsii-pacmak-1.42.0.tgz"; - sha512 = "JqgvmI2gIEedB+BvfG7kXkxc5o38TI1VwdQTgUW5hbr0631AgKs/hrpWqcUQ9aNQFwTyzaKWPb0vF8bDitCF6A=="; + url = "https://registry.npmjs.org/jsii-pacmak/-/jsii-pacmak-1.43.0.tgz"; + sha512 = "GrvEz/Rbiwu+O3HWNiDybXV+homhzSZH0DgBkfCvmPvPUJPmSn1u3cU586F77gESGTOy9bOXJOkGfXpq9PZO4Q=="; }; }; - "jsii-reflect-1.42.0" = { + "jsii-reflect-1.43.0" = { name = "jsii-reflect"; packageName = "jsii-reflect"; - version = "1.42.0"; + version = "1.43.0"; src = fetchurl { - url = "https://registry.npmjs.org/jsii-reflect/-/jsii-reflect-1.42.0.tgz"; - sha512 = "gwVZqk2vEnEEYfOU2awHaqZqJd9lA+rEBrlaiMlun42Ve2ZY5HMDBtP/DxgFJG68LCzdlS0xQuHleuBlLYWy0A=="; + url = "https://registry.npmjs.org/jsii-reflect/-/jsii-reflect-1.43.0.tgz"; + sha512 = "UoEK0c2CO0LPvb53TkedFFyAKBXbrb35vs65HJhfBzBqyZBcPQ3+mm6lFA38oTtsDFNBJe0Eyg0cuFaWzWDllg=="; }; }; - "jsii-rosetta-1.42.0" = { + "jsii-rosetta-1.43.0" = { name = "jsii-rosetta"; packageName = "jsii-rosetta"; - version = "1.42.0"; + version = "1.43.0"; src = fetchurl { - url = "https://registry.npmjs.org/jsii-rosetta/-/jsii-rosetta-1.42.0.tgz"; - sha512 = "F7GLNdoHBAYN4eqw7c6Tv12lqGOoMazsjuXDJRubjjbbwZ0tM6a78rHhrZwE4w1XV7mIkTxKmkj4DnbSIPW8wg=="; + url = "https://registry.npmjs.org/jsii-rosetta/-/jsii-rosetta-1.43.0.tgz"; + sha512 = "AjJ0tlrnBatJB7OJ/cn9sFaLpM4Ra7fSkxLlHNWsVE1KFAUnCLIcDloXaytaDmBXY/emxi3/XbWwGUIqbjbCIw=="; }; }; - "jsii-srcmak-0.1.386" = { + "jsii-srcmak-0.1.396" = { name = "jsii-srcmak"; packageName = "jsii-srcmak"; - version = "0.1.386"; + version = "0.1.396"; src = fetchurl { - url = "https://registry.npmjs.org/jsii-srcmak/-/jsii-srcmak-0.1.386.tgz"; - sha512 = "cKGLruiv9J6dB8g2PEem2OQtpxG4HsUU5rhaon9J4H58rVaPIEskXVpeUn3/9DJ8hLQSMCV0QUM7JtzG/SeOyg=="; + url = "https://registry.npmjs.org/jsii-srcmak/-/jsii-srcmak-0.1.396.tgz"; + sha512 = "io/gnInaCTuxgqA/sueTLm44nlJdcWNeUnrZUMW166VKNp+XCLF4kccLaSM6BwuoLKoSxtOL3BAjfYgqtVNIuQ=="; }; }; "json-bigint-1.0.0" = { @@ -34877,13 +35948,13 @@ let sha1 = "b480c892e59a2f05954ce727bd3f2a4e882f9e13"; }; }; - "json-schema-0.3.0" = { + "json-schema-0.4.0" = { name = "json-schema"; packageName = "json-schema"; - version = "0.3.0"; + version = "0.4.0"; src = fetchurl { - url = "https://registry.npmjs.org/json-schema/-/json-schema-0.3.0.tgz"; - sha512 = "TYfxx36xfl52Rf1LU9HyWSLGPdYLL+SQ8/E/0yVyKG8wCCDaSrhPap0vEdlsZWRaS6tnKKLPGiEJGiREVC8kxQ=="; + url = "https://registry.npmjs.org/json-schema/-/json-schema-0.4.0.tgz"; + sha512 = "es94M3nTIfsEPisRafak+HDLfHXnKBhV3vU5eqPcS3flIWqcxJWgXHXiey3YrpaNsanY5ei1VoYEbOzijuq9BA=="; }; }; "json-schema-deref-sync-0.13.0" = { @@ -35021,13 +36092,13 @@ let sha512 = "0/4Lv6IenJV0qj2oBdgPIAmFiKKnh8qh7bmLFJ+/ZZHLjSeiL3fKKGX3UryvKPbxFbhV+JcYo9KUC19GJ/Z/4A=="; }; }; - "json2jsii-0.2.40" = { + "json2jsii-0.2.49" = { name = "json2jsii"; packageName = "json2jsii"; - version = "0.2.40"; + version = "0.2.49"; src = fetchurl { - url = "https://registry.npmjs.org/json2jsii/-/json2jsii-0.2.40.tgz"; - sha512 = "XtopwIXyLJWiyBydDjczRk7i51H31Nno5BnWf34zbjyAm5SUxzJ6IsqwVfuANys06tFkJYct+ghO/v52qsCAAw=="; + url = "https://registry.npmjs.org/json2jsii/-/json2jsii-0.2.49.tgz"; + sha512 = "4SzHZSGzlD3FG2599ROxzaW1O3rnV9M+0ZP0TPAcQky31NruMocL21WVjzBzG2EZmM4u7L4JlceHVVFLCmziYw=="; }; }; "json3-3.2.6" = { @@ -35246,13 +36317,13 @@ let sha512 = "e0Jtg4KAzDJKKwzbLaUtinCn0RZseWBVRTRGihSpvFlM3wTR7ExSp+PTdeTsDrLNJUe7L7JYJe8mblHX5SCT6A=="; }; }; - "jsonpointer-4.1.0" = { + "jsonpointer-5.0.0" = { name = "jsonpointer"; packageName = "jsonpointer"; - version = "4.1.0"; + version = "5.0.0"; src = fetchurl { - url = "https://registry.npmjs.org/jsonpointer/-/jsonpointer-4.1.0.tgz"; - sha512 = "CXcRvMyTlnR53xMcKnuMzfCA5i/nfblTnnr74CZb6C4vG39eu6w51t7nKmU5MfLfbTgGItliNyjO/ciNPDqClg=="; + url = "https://registry.npmjs.org/jsonpointer/-/jsonpointer-5.0.0.tgz"; + sha512 = "PNYZIdMjVIvVgDSYKTT63Y+KZ6IZvGRNNWcxwD+GNnUz1MKPfv30J8ueCjdwcN0nDx2SlshgyB7Oy0epAzVRRg=="; }; }; "jsonschema-1.4.0" = { @@ -36344,6 +37415,15 @@ let sha512 = "+bT2uH4E5LGE7h/n3evcS/sQlJXCpIp6ym8OWJ5eV6+67Dsql/LaaT7qJBAt2rzfoa/5QBGBhxDix1dMt2kQKQ=="; }; }; + "li-1.3.0" = { + name = "li"; + packageName = "li"; + version = "1.3.0"; + src = fetchurl { + url = "https://registry.npmjs.org/li/-/li-1.3.0.tgz"; + sha1 = "22c59bcaefaa9a8ef359cf759784e4bf106aea1b"; + }; + }; "libnested-1.5.0" = { name = "libnested"; packageName = "libnested"; @@ -36488,6 +37568,24 @@ let sha512 = "vYdmsIeYq5Tzd4k9HQ41VfP26jZfjtyemZEX1TUfhTBxgqgJvlXubhXfkxXaVb9FF2URdJfZRNo2YYHacFozmQ=="; }; }; + "lightning-4.13.1" = { + name = "lightning"; + packageName = "lightning"; + version = "4.13.1"; + src = fetchurl { + url = "https://registry.npmjs.org/lightning/-/lightning-4.13.1.tgz"; + sha512 = "4pKOAp86o0298Vt7aZRXr0UH7ymq2zRIB+wZlUUoHAZ36rKpeBhsMb1DPDZCh0ntcocYaedkCIXjbz/a5sALVA=="; + }; + }; + "lightning-4.14.1" = { + name = "lightning"; + packageName = "lightning"; + version = "4.14.1"; + src = fetchurl { + url = "https://registry.npmjs.org/lightning/-/lightning-4.14.1.tgz"; + sha512 = "k8PINVBXEhrpsAM5cnxMCWVBqI1FyoAE/HbkwfWzzcEhLdshGzJEnwmi2MxhNqhTnBBZBuDgtZakCifkZVj41g=="; + }; + }; "lightning-4.5.0" = { name = "lightning"; packageName = "lightning"; @@ -36497,13 +37595,13 @@ let sha512 = "oKH9EVKxgPIWm2f3/7vLImQAZQVP2souwAMMg5njGdCPAlekA8KH+/r+Ltuv5jd1vQigwmQMkfmdZzd4qmOI8Q=="; }; }; - "lilconfig-2.0.3" = { + "lilconfig-2.0.4" = { name = "lilconfig"; packageName = "lilconfig"; - version = "2.0.3"; + version = "2.0.4"; src = fetchurl { - url = "https://registry.npmjs.org/lilconfig/-/lilconfig-2.0.3.tgz"; - sha512 = "EHKqr/+ZvdKCifpNrJCKxBTgk5XupZA3y/aCPY9mxfgBzmgh93Mt/WqjjQ38oMxXuvDokaKiM3lAgvSH2sjtHg=="; + url = "https://registry.npmjs.org/lilconfig/-/lilconfig-2.0.4.tgz"; + sha512 = "bfTIN7lEsiooCocSISTWXkiWJkRqtL9wYtYy+8EK3Y41qh3mpwPU0ycTOgjdY9ErwXCc8QyrQp82bdL0Xkm9yA=="; }; }; "limit-spawn-0.0.3" = { @@ -36659,6 +37757,15 @@ let sha512 = "C6aYABDRKoNLIooap5FZxvPFVcQjLYuHkbg5vTQHhydBMje8M/e8ZtHXWQNC3cC42W6dE7Nrdh1cCg1cYhNp6g=="; }; }; + "ln-accounting-5.0.4" = { + name = "ln-accounting"; + packageName = "ln-accounting"; + version = "5.0.4"; + src = fetchurl { + url = "https://registry.npmjs.org/ln-accounting/-/ln-accounting-5.0.4.tgz"; + sha512 = "28hggeYTXHim0d6g65c1PiHoKKV3cVXApBEui9b7WXeo+FumGVTcZTJ2g6Ojed45GrNK9I9WBECVW3X/YKVMuA=="; + }; + }; "ln-service-52.0.3" = { name = "ln-service"; packageName = "ln-service"; @@ -36686,6 +37793,24 @@ let sha512 = "Fd48a8g26I4Bz9HR50PjSpXWPryiZTfy57v3oRaBlZdZIpiwoyYRc8Bod25lvJeq0aKwsSl87TQjTqXDF+eXeA=="; }; }; + "ln-service-52.14.3" = { + name = "ln-service"; + packageName = "ln-service"; + version = "52.14.3"; + src = fetchurl { + url = "https://registry.npmjs.org/ln-service/-/ln-service-52.14.3.tgz"; + sha512 = "pRzU5i1aG9tn5bjH9vtS2/IngL3ZFmSKNdbLuw1QDvUE0VTkethL2hST7cJCNFpiPftuM65eNtT10woBXgYBfQ=="; + }; + }; + "ln-service-52.15.0" = { + name = "ln-service"; + packageName = "ln-service"; + version = "52.15.0"; + src = fetchurl { + url = "https://registry.npmjs.org/ln-service/-/ln-service-52.15.0.tgz"; + sha512 = "7HjeyEMrcIGP9Q6LdRyVD7qFWu+gQbWkwuOpnFJYoodKsLqhWFykAZ7wS2OjXlvw/8+/ASQcxe5o2gVm501lLw=="; + }; + }; "ln-service-52.4.0" = { name = "ln-service"; packageName = "ln-service"; @@ -36704,6 +37829,15 @@ let sha512 = "5Djy5IUeM9jT6r0s6ptnaKjJZxHTQxVATYcK+Y7vdvQ4vf15sRY+sSSPqL1uYpbUWLo5hUSwLcGuLeBYgEUDlg=="; }; }; + "ln-sync-3.0.0" = { + name = "ln-sync"; + packageName = "ln-sync"; + version = "3.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/ln-sync/-/ln-sync-3.0.0.tgz"; + sha512 = "j+QGoRwJietE0LpYu/1pKXxM2EpHGFKr+9YG5jM2k7RQvKh3ND3pciNWbhGiGBDdANES9aDuy6aTA/12505ZaQ=="; + }; + }; "ln-telegram-3.4.0" = { name = "ln-telegram"; packageName = "ln-telegram"; @@ -36785,6 +37919,15 @@ let sha512 = "od7eKCCZ62ITvFf8nHHrIiYmgOHb4xVNDRDqxBWSaao5FZyyZVX8OmRCbwjDGPrSrgIulwPNyBsWCGnhiDC0oQ=="; }; }; + "load-plugin-4.0.1" = { + name = "load-plugin"; + packageName = "load-plugin"; + version = "4.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/load-plugin/-/load-plugin-4.0.1.tgz"; + sha512 = "4kMi+mOSn/TR51pDo4tgxROHfBHXsrcyEYSGHcJ1o6TtRaP2PsRM5EwmYbj1uiLDvbfA/ohwuSWZJzqGiai8Dw=="; + }; + }; "load-yaml-file-0.2.0" = { name = "load-yaml-file"; packageName = "load-yaml-file"; @@ -36839,13 +37982,13 @@ let sha512 = "rP4F0h2RaWSvPEkD7BLDFQnvSf+nK+wr3ESUjNTyAGobqrijmW92zc+SO6d4p4B1wh7+B/Jg1mkQe5NYUEHtHQ=="; }; }; - "loader-utils-2.0.1" = { + "loader-utils-2.0.2" = { name = "loader-utils"; packageName = "loader-utils"; - version = "2.0.1"; + version = "2.0.2"; src = fetchurl { - url = "https://registry.npmjs.org/loader-utils/-/loader-utils-2.0.1.tgz"; - sha512 = "g4miPa9uUrZz4iElkaVJgDFwKJGh8aQGM7pUL4ejXl6cu7kSb30seQOVGNMP6sW8j7DW77X68hJZ+GM7UGhXeQ=="; + url = "https://registry.npmjs.org/loader-utils/-/loader-utils-2.0.2.tgz"; + sha512 = "TM57VeHptv569d/GKh6TAYdzKblwDNiumOdkFnejjD0XwTH87K90w3O7AiJRqdQoXygvi1VQTJTLGhJl7WqA7A=="; }; }; "loady-0.0.5" = { @@ -38171,6 +39314,15 @@ let sha512 = "8XPvpAA8uyhfteu8pIvQxpJZ7SYYdpUivZpGy6sFsBuKRY/7rQGavedeB8aK+Zkyq6upMFVL/9AW6vOYzfRyLg=="; }; }; + "log-symbols-5.0.0" = { + name = "log-symbols"; + packageName = "log-symbols"; + version = "5.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/log-symbols/-/log-symbols-5.0.0.tgz"; + sha512 = "zBsSKauX7sM0kcqrf8VpMRPqcWzU6a/Wi7iEl0QlVSCiIZ4CctaLdfVdiZUn6q2/nenyt392qJqpw9FhNAwqxQ=="; + }; + }; "log-update-1.0.2" = { name = "log-update"; packageName = "log-update"; @@ -38279,6 +39431,15 @@ let sha1 = "2a7f8066ec3ab40bef28ca384842e75340183bf0"; }; }; + "lomstream-1.1.1" = { + name = "lomstream"; + packageName = "lomstream"; + version = "1.1.1"; + src = fetchurl { + url = "https://registry.npmjs.org/lomstream/-/lomstream-1.1.1.tgz"; + sha512 = "G2UKFT23/uueUnpUWYwB+uOlqcLvF6r1vNsMgTR6roJPpvpFQkgG75bkpAy/XYvaLpGs8XSgS24CUKC92Ap+jg=="; + }; + }; "long-1.1.2" = { name = "long"; packageName = "long"; @@ -39189,6 +40350,15 @@ let sha512 = "Ezda85ToJUBhM6WGaG6veasyym+Tbs3cMAw/ZhOPqXiYsr0jgocBV3j3nx+4lk47plLlIqjwuTm/ywVI+zjJ/A=="; }; }; + "markdown-table-3.0.1" = { + name = "markdown-table"; + packageName = "markdown-table"; + version = "3.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/markdown-table/-/markdown-table-3.0.1.tgz"; + sha512 = "CBbaYXKSGnE1uLRpKA1SWgIRb2PQrpkllNWpZtZe6VojOJ4ysqiq7/2glYcmKsOYN09QgH/HEBX5hIshAeiK6A=="; + }; + }; "markdownlint-0.24.0" = { name = "markdownlint"; packageName = "markdownlint"; @@ -39198,6 +40368,15 @@ let sha512 = "OJIGsGFV/rC9irI5E1FMy6v9hdACSwaa+EN3224Y5KG8zj2EYzdHOw0pOJovIYmjNfEZ9BtxUY4P7uYHTSNnbQ=="; }; }; + "markdownlint-cli2-formatter-default-0.0.2" = { + name = "markdownlint-cli2-formatter-default"; + packageName = "markdownlint-cli2-formatter-default"; + version = "0.0.2"; + src = fetchurl { + url = "https://registry.npmjs.org/markdownlint-cli2-formatter-default/-/markdownlint-cli2-formatter-default-0.0.2.tgz"; + sha512 = "jIz1X3SIC8sX4NDFqQFUXL+JEtfnDoN4i+xocEu+etcxGX455pHb6sx86f/yVk4mKJ2o7aNe2ydSx9an22BfBg=="; + }; + }; "markdownlint-rule-helpers-0.15.0" = { name = "markdownlint-rule-helpers"; packageName = "markdownlint-rule-helpers"; @@ -39432,6 +40611,15 @@ let sha512 = "vTFXtmbbF3rgnTh3Zl3irso4LtvwUq/jaDvT2D1JqTGAwaipcS7RpTxzi6KjoRqI9n2yuAhzLDAC8xVTF3XYVQ=="; }; }; + "mdast-comment-marker-2.1.0" = { + name = "mdast-comment-marker"; + packageName = "mdast-comment-marker"; + version = "2.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/mdast-comment-marker/-/mdast-comment-marker-2.1.0.tgz"; + sha512 = "/+Cfm8A83PjkqjQDB9iYqHESGuXlriCWAwRGPJjkYmxXrF4r6saxeUlOKNrf+SogTwg9E8uyHRCFHLG6/BAAdA=="; + }; + }; "mdast-util-compact-1.0.4" = { name = "mdast-util-compact"; packageName = "mdast-util-compact"; @@ -39459,6 +40647,15 @@ let sha512 = "9cKl33Y21lyckGzpSmEQnIDjEfeeWelN5s1kUW1LwdB0Fkuq2u+4GdqcGEygYxJE8GVqCl0741bYXHgamfWAZA=="; }; }; + "mdast-util-find-and-replace-2.1.0" = { + name = "mdast-util-find-and-replace"; + packageName = "mdast-util-find-and-replace"; + version = "2.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/mdast-util-find-and-replace/-/mdast-util-find-and-replace-2.1.0.tgz"; + sha512 = "1w1jbqAd13oU78QPBf5223+xB+37ecNtQ1JElq2feWols5oEYAl+SgNDnOZipe7NfLemoEt362yUS15/wip4mw=="; + }; + }; "mdast-util-footnote-0.1.7" = { name = "mdast-util-footnote"; packageName = "mdast-util-footnote"; @@ -39495,6 +40692,15 @@ let sha512 = "FHKL4w4S5fdt1KjJCwB0178WJ0evnyyQr5kXTM3wrOVpytD0hrkvd+AOOjU9Td8onOejCkmZ+HQRT3CZ3coHHQ=="; }; }; + "mdast-util-frontmatter-1.0.0" = { + name = "mdast-util-frontmatter"; + packageName = "mdast-util-frontmatter"; + version = "1.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/mdast-util-frontmatter/-/mdast-util-frontmatter-1.0.0.tgz"; + sha512 = "7itKvp0arEVNpCktOET/eLFAYaZ+0cNjVtFtIPxgQ5tV+3i+D4SDDTjTzPWl44LT59PC+xdx+glNTawBdF98Mw=="; + }; + }; "mdast-util-gfm-0.1.2" = { name = "mdast-util-gfm"; packageName = "mdast-util-gfm"; @@ -39504,6 +40710,15 @@ let sha512 = "NNkhDx/qYcuOWB7xHUGWZYVXvjPFFd6afg6/e2g+SV4r9q5XUcCbV4Wfa3DLYIiD+xAEZc6K4MGaE/m0KDcPwQ=="; }; }; + "mdast-util-gfm-2.0.0" = { + name = "mdast-util-gfm"; + packageName = "mdast-util-gfm"; + version = "2.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/mdast-util-gfm/-/mdast-util-gfm-2.0.0.tgz"; + sha512 = "wMwejlTN3EQADPFuvxe8lmGsay3+f6gSJKdAHR6KBJzpcxvsjJSILB9K6u6G7eQLC7iOTyVIHYGui9uBc9r1Tg=="; + }; + }; "mdast-util-gfm-autolink-literal-0.1.3" = { name = "mdast-util-gfm-autolink-literal"; packageName = "mdast-util-gfm-autolink-literal"; @@ -39513,6 +40728,24 @@ let sha512 = "GjmLjWrXg1wqMIO9+ZsRik/s7PLwTaeCHVB7vRxUwLntZc8mzmTsLVr6HW1yLokcnhfURsn5zmSVdi3/xWWu1A=="; }; }; + "mdast-util-gfm-autolink-literal-1.0.2" = { + name = "mdast-util-gfm-autolink-literal"; + packageName = "mdast-util-gfm-autolink-literal"; + version = "1.0.2"; + src = fetchurl { + url = "https://registry.npmjs.org/mdast-util-gfm-autolink-literal/-/mdast-util-gfm-autolink-literal-1.0.2.tgz"; + sha512 = "FzopkOd4xTTBeGXhXSBU0OCDDh5lUj2rd+HQqG92Ld+jL4lpUfgX2AT2OHAVP9aEeDKp7G92fuooSZcYJA3cRg=="; + }; + }; + "mdast-util-gfm-footnote-1.0.0" = { + name = "mdast-util-gfm-footnote"; + packageName = "mdast-util-gfm-footnote"; + version = "1.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/mdast-util-gfm-footnote/-/mdast-util-gfm-footnote-1.0.0.tgz"; + sha512 = "qeg9YoS2YYP6OBmMyUFxKXb6BLwAsbGidIxgwDAXHIMYZQhIwe52L9BSJs+zP29Jp5nSERPkmG3tSwAN23/ZbQ=="; + }; + }; "mdast-util-gfm-strikethrough-0.2.3" = { name = "mdast-util-gfm-strikethrough"; packageName = "mdast-util-gfm-strikethrough"; @@ -39522,6 +40755,15 @@ let sha512 = "5OQLXpt6qdbttcDG/UxYY7Yjj3e8P7X16LzvpX8pIQPYJ/C2Z1qFGMmcw+1PZMUM3Z8wt8NRfYTvCni93mgsgA=="; }; }; + "mdast-util-gfm-strikethrough-1.0.0" = { + name = "mdast-util-gfm-strikethrough"; + packageName = "mdast-util-gfm-strikethrough"; + version = "1.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/mdast-util-gfm-strikethrough/-/mdast-util-gfm-strikethrough-1.0.0.tgz"; + sha512 = "gM9ipBUdRxYa6Yq1Hd8Otg6jEn/dRxFZ1F9ZX4QHosHOexLGqNZO2dh0A+YFbUEd10RcKjnjb4jOfJJzoXXUew=="; + }; + }; "mdast-util-gfm-table-0.1.6" = { name = "mdast-util-gfm-table"; packageName = "mdast-util-gfm-table"; @@ -39531,6 +40773,15 @@ let sha512 = "j4yDxQ66AJSBwGkbpFEp9uG/LS1tZV3P33fN1gkyRB2LoRL+RR3f76m0HPHaby6F4Z5xr9Fv1URmATlRRUIpRQ=="; }; }; + "mdast-util-gfm-table-1.0.1" = { + name = "mdast-util-gfm-table"; + packageName = "mdast-util-gfm-table"; + version = "1.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/mdast-util-gfm-table/-/mdast-util-gfm-table-1.0.1.tgz"; + sha512 = "NByKuaSg5+M6r9DZBPXFUmhMHGFf9u+WE76EeStN01ghi8hpnydiWBXr+qj0XCRWI7SAMNtEjGvip6zci9axQA=="; + }; + }; "mdast-util-gfm-task-list-item-0.1.6" = { name = "mdast-util-gfm-task-list-item"; packageName = "mdast-util-gfm-task-list-item"; @@ -39540,6 +40791,15 @@ let sha512 = "/d51FFIfPsSmCIRNp7E6pozM9z1GYPIkSy1urQ8s/o4TC22BZ7DqfHFWiqBD23bc7J3vV1Fc9O4QIHBlfuit8A=="; }; }; + "mdast-util-gfm-task-list-item-1.0.0" = { + name = "mdast-util-gfm-task-list-item"; + packageName = "mdast-util-gfm-task-list-item"; + version = "1.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/mdast-util-gfm-task-list-item/-/mdast-util-gfm-task-list-item-1.0.0.tgz"; + sha512 = "dwkzOTjQe8JCCHVE3Cb0pLHTYLudf7t9WCAnb20jI8/dW+VHjgWhjtIUVA3oigNkssgjEwX+i+3XesUdCnXGyA=="; + }; + }; "mdast-util-heading-style-1.0.6" = { name = "mdast-util-heading-style"; packageName = "mdast-util-heading-style"; @@ -39621,6 +40881,15 @@ let sha512 = "Y4ffygj85MTt70STKnEquw6k73jYWJBaYcb4ITAKgSNokZF7fH8rEHZ1GsRY/JaxqUevMaEnsDmkVv5Z9uVRdg=="; }; }; + "mdast-util-to-nlcst-5.2.1" = { + name = "mdast-util-to-nlcst"; + packageName = "mdast-util-to-nlcst"; + version = "5.2.1"; + src = fetchurl { + url = "https://registry.npmjs.org/mdast-util-to-nlcst/-/mdast-util-to-nlcst-5.2.1.tgz"; + sha512 = "Xznpj85MsJnLQjBboajOovT2fAAvbbbmYutpFgzLi9pjZEOkgGzjq+t6fHcge8uzZ5uEkj5pigzw2QrnIVq/kw=="; + }; + }; "mdast-util-to-string-1.1.0" = { name = "mdast-util-to-string"; packageName = "mdast-util-to-string"; @@ -40242,6 +41511,15 @@ let sha512 = "q6nPLFCMTLtfsctAuS0Xh4vaolxSFUWUWR6PZSrXXiRy+SANGllpcqdXFv2z07l0Xz/6Hl40hK0ffNCJPH2n1A=="; }; }; + "micromark-extension-frontmatter-1.0.0" = { + name = "micromark-extension-frontmatter"; + packageName = "micromark-extension-frontmatter"; + version = "1.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/micromark-extension-frontmatter/-/micromark-extension-frontmatter-1.0.0.tgz"; + sha512 = "EXjmRnupoX6yYuUJSQhrQ9ggK0iQtQlpi6xeJzVD5xscyAI+giqco5fdymayZhJMbIFecjnE2yz85S9NzIgQpg=="; + }; + }; "micromark-extension-gfm-0.3.3" = { name = "micromark-extension-gfm"; packageName = "micromark-extension-gfm"; @@ -40251,6 +41529,15 @@ let sha512 = "oVN4zv5/tAIA+l3GbMi7lWeYpJ14oQyJ3uEim20ktYFAcfX1x3LNlFGGlmrZHt7u9YlKExmyJdDGaTt6cMSR/A=="; }; }; + "micromark-extension-gfm-2.0.0" = { + name = "micromark-extension-gfm"; + packageName = "micromark-extension-gfm"; + version = "2.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/micromark-extension-gfm/-/micromark-extension-gfm-2.0.0.tgz"; + sha512 = "yYPlZ48Ss8fRFSmlQP/QXt3/M6tEvawEVFO+jDPnFA3mGeVgzIyaeHgrIV/9AMFAjQhctKA47Bk8xBhcuaL74Q=="; + }; + }; "micromark-extension-gfm-autolink-literal-0.5.7" = { name = "micromark-extension-gfm-autolink-literal"; packageName = "micromark-extension-gfm-autolink-literal"; @@ -40260,6 +41547,24 @@ let sha512 = "ePiDGH0/lhcngCe8FtH4ARFoxKTUelMp4L7Gg2pujYD5CSMb9PbblnyL+AAMud/SNMyusbS2XDSiPIRcQoNFAw=="; }; }; + "micromark-extension-gfm-autolink-literal-1.0.2" = { + name = "micromark-extension-gfm-autolink-literal"; + packageName = "micromark-extension-gfm-autolink-literal"; + version = "1.0.2"; + src = fetchurl { + url = "https://registry.npmjs.org/micromark-extension-gfm-autolink-literal/-/micromark-extension-gfm-autolink-literal-1.0.2.tgz"; + sha512 = "z2Asd0v4iV/QoI1l23J1qB6G8IqVWTKmwdlP45YQfdGW47ZzpddyzSxZ78YmlucOLqIbS5H98ekKf9GunFfnLA=="; + }; + }; + "micromark-extension-gfm-footnote-1.0.2" = { + name = "micromark-extension-gfm-footnote"; + packageName = "micromark-extension-gfm-footnote"; + version = "1.0.2"; + src = fetchurl { + url = "https://registry.npmjs.org/micromark-extension-gfm-footnote/-/micromark-extension-gfm-footnote-1.0.2.tgz"; + sha512 = "C6o+B7w1wDM4JjDJeHCTszFYF1q46imElNY6mfXsBfw4E91M9TvEEEt3sy0FbJmGVzdt1pqFVRYWT9ZZ0FjFuA=="; + }; + }; "micromark-extension-gfm-strikethrough-0.6.5" = { name = "micromark-extension-gfm-strikethrough"; packageName = "micromark-extension-gfm-strikethrough"; @@ -40269,6 +41574,15 @@ let sha512 = "PpOKlgokpQRwUesRwWEp+fHjGGkZEejj83k9gU5iXCbDG+XBA92BqnRKYJdfqfkrRcZRgGuPuXb7DaK/DmxOhw=="; }; }; + "micromark-extension-gfm-strikethrough-1.0.3" = { + name = "micromark-extension-gfm-strikethrough"; + packageName = "micromark-extension-gfm-strikethrough"; + version = "1.0.3"; + src = fetchurl { + url = "https://registry.npmjs.org/micromark-extension-gfm-strikethrough/-/micromark-extension-gfm-strikethrough-1.0.3.tgz"; + sha512 = "PJKhBNyrNIo694ZQCE/FBBQOQSb6YC0Wi5Sv0OCah5XunnNaYbtak9CSv9/eq4YeFMMyd1jX84IRwUSE+7ioLA=="; + }; + }; "micromark-extension-gfm-table-0.4.3" = { name = "micromark-extension-gfm-table"; packageName = "micromark-extension-gfm-table"; @@ -40278,6 +41592,15 @@ let sha512 = "hVGvESPq0fk6ALWtomcwmgLvH8ZSVpcPjzi0AjPclB9FsVRgMtGZkUcpE0zgjOCFAznKepF4z3hX8z6e3HODdA=="; }; }; + "micromark-extension-gfm-table-1.0.3" = { + name = "micromark-extension-gfm-table"; + packageName = "micromark-extension-gfm-table"; + version = "1.0.3"; + src = fetchurl { + url = "https://registry.npmjs.org/micromark-extension-gfm-table/-/micromark-extension-gfm-table-1.0.3.tgz"; + sha512 = "JIfE1DGi64zzOx39/pGg6cZbiaUAF/MXbBLZnVl4aFz6Mja7GYMZjksfTGm9NzbgZkiZvbD77NLPuwGIRcFMjg=="; + }; + }; "micromark-extension-gfm-tagfilter-0.3.0" = { name = "micromark-extension-gfm-tagfilter"; packageName = "micromark-extension-gfm-tagfilter"; @@ -40287,6 +41610,15 @@ let sha512 = "9GU0xBatryXifL//FJH+tAZ6i240xQuFrSL7mYi8f4oZSbc+NvXjkrHemeYP0+L4ZUT+Ptz3b95zhUZnMtoi/Q=="; }; }; + "micromark-extension-gfm-tagfilter-1.0.0" = { + name = "micromark-extension-gfm-tagfilter"; + packageName = "micromark-extension-gfm-tagfilter"; + version = "1.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/micromark-extension-gfm-tagfilter/-/micromark-extension-gfm-tagfilter-1.0.0.tgz"; + sha512 = "GGUZhzQrOdHR8RHU2ru6K+4LMlj+pBdNuXRtw5prOflDOk2hHqDB0xEgej1AHJ2VETeycX7tzQh2EmaTUOmSKg=="; + }; + }; "micromark-extension-gfm-task-list-item-0.3.3" = { name = "micromark-extension-gfm-task-list-item"; packageName = "micromark-extension-gfm-task-list-item"; @@ -40296,6 +41628,15 @@ let sha512 = "0zvM5iSLKrc/NQl84pZSjGo66aTGd57C1idmlWmE87lkMcXrTxg1uXa/nXomxJytoje9trP0NDLvw4bZ/Z/XCQ=="; }; }; + "micromark-extension-gfm-task-list-item-1.0.2" = { + name = "micromark-extension-gfm-task-list-item"; + packageName = "micromark-extension-gfm-task-list-item"; + version = "1.0.2"; + src = fetchurl { + url = "https://registry.npmjs.org/micromark-extension-gfm-task-list-item/-/micromark-extension-gfm-task-list-item-1.0.2.tgz"; + sha512 = "8AZib9xxPtppTKig/d00i9uKi96kVgoqin7+TRtGprDb8uTUrN1ZfJ38ga8yUdmu7EDQxr2xH8ltZdbCcmdshg=="; + }; + }; "micromark-extension-mdx-expression-1.0.2" = { name = "micromark-extension-mdx-expression"; packageName = "micromark-extension-mdx-expression"; @@ -40674,13 +42015,13 @@ let sha512 = "/NOTfLrsPBVeH7YtFPgsVWveuL+4SjjYxaQ1xtM1KMFj7HdxlBlxeyNLzhyJVx7r4rZGJAZ/6lkKCitSc/Nmpg=="; }; }; - "mime-db-1.50.0" = { + "mime-db-1.51.0" = { name = "mime-db"; packageName = "mime-db"; - version = "1.50.0"; + version = "1.51.0"; src = fetchurl { - url = "https://registry.npmjs.org/mime-db/-/mime-db-1.50.0.tgz"; - sha512 = "9tMZCDlYHqeERXEHO9f/hKfNXhre5dK2eE/krIvUjZbS2KPcqGDfNShIWS1uW9XOTKQKqK6qbeOci18rbfW77A=="; + url = "https://registry.npmjs.org/mime-db/-/mime-db-1.51.0.tgz"; + sha512 = "5y8A56jg7XVQx2mbv1lu49NR4dokRnhZYTtL+KGfaa27uq4pSTXkwQkFJl4pkRMyNFz/EtYDSkiiEHx3F7UN6g=="; }; }; "mime-types-2.1.18" = { @@ -40701,13 +42042,13 @@ let sha512 = "JIhqnCasI9yD+SsmkquHBxTSEuZdQX5BuQnS2Vc7puQQQ+8yiP5AY5uWhpdv4YL4VM5c6iliiYWPgJ/nJQLp7w=="; }; }; - "mime-types-2.1.33" = { + "mime-types-2.1.34" = { name = "mime-types"; packageName = "mime-types"; - version = "2.1.33"; + version = "2.1.34"; src = fetchurl { - url = "https://registry.npmjs.org/mime-types/-/mime-types-2.1.33.tgz"; - sha512 = "plLElXp7pRDd0bNZHw+nMd52vRYjLwQjygaNg7ddJ2uJtTlmnTCjWuPKxVu6//AdaRuME84SvLW91sIkBqGT0g=="; + url = "https://registry.npmjs.org/mime-types/-/mime-types-2.1.34.tgz"; + sha512 = "6cP692WwGIs9XXdOO4++N+7qjqv0rqxxVvJ3VHPh/Sc9mVZcQP+ZGhkKiTvWMQRr2tbHkJP/Yn7Y0npb3ZBs4A=="; }; }; "mimic-fn-1.2.0" = { @@ -41160,13 +42501,13 @@ let sha512 = "sdqtiFt3lkOaYvTXSRIUjkIdPTcxgv5+fgqYE/5qgwdw12cOrAuzzgzvVExIkH/ul1oeHN3bCLOWSG3XOqbKKw=="; }; }; - "mobx-6.3.6" = { + "mobx-6.3.7" = { name = "mobx"; packageName = "mobx"; - version = "6.3.6"; + version = "6.3.7"; src = fetchurl { - url = "https://registry.npmjs.org/mobx/-/mobx-6.3.6.tgz"; - sha512 = "TeCp8BTco5cmXKY7Zt5VSL5fHBEAHTSA6xs+KWmcxi3cFN1C+Xqs2m3giyGT/e6TSjtdDysVX5+cCZZhEyiJmA=="; + url = "https://registry.npmjs.org/mobx/-/mobx-6.3.7.tgz"; + sha512 = "X7yU7eOEyxIBk4gjIi2UIilwdw48gXh0kcZ5ex3Rc+COJsJmJ4SNpf42uYea3aUqb1hedTv5xzJrq5Q55p0P5g=="; }; }; "mobx-react-7.2.1" = { @@ -41322,6 +42663,15 @@ let sha512 = "PTc2vcT8K9J5/9rDEPe5czSIKgLoGsH8UNpA4qZTVw0Vd/Uz19geE9abbIOQKaAQFcnQ3v5YEXrbSc5BpshH+w=="; }; }; + "moment-timezone-0.5.34" = { + name = "moment-timezone"; + packageName = "moment-timezone"; + version = "0.5.34"; + src = fetchurl { + url = "https://registry.npmjs.org/moment-timezone/-/moment-timezone-0.5.34.tgz"; + sha512 = "3zAEHh2hKUs3EXLESx/wsgw6IQdusOT8Bxm3D9UrHPQR7zlMmzwybC8zHEM1tQ4LJwP7fcxrWr8tuBg05fFCbg=="; + }; + }; "monotonic-timestamp-0.0.9" = { name = "monotonic-timestamp"; packageName = "monotonic-timestamp"; @@ -42015,15 +43365,6 @@ let sha512 = "7sBZo9wthqNJ7QXnfVXZL7fkKJLN55GLOdX+RyZT34UOvxxnFtJe/c7K0ZRLAKOvaY1xJThFFn0Usw2H9R6Frg=="; }; }; - "nanocolors-0.2.13" = { - name = "nanocolors"; - packageName = "nanocolors"; - version = "0.2.13"; - src = fetchurl { - url = "https://registry.npmjs.org/nanocolors/-/nanocolors-0.2.13.tgz"; - sha512 = "0n3mSAQLPpGLV9ORXT5+C/D4mwew7Ebws69Hx4E2sgz2ZA5+32Q80B9tL8PbL7XHnRDiAxH/pnrUJ9a4fkTNTA=="; - }; - }; "nanoguard-1.3.0" = { name = "nanoguard"; packageName = "nanoguard"; @@ -42628,6 +43969,15 @@ let sha512 = "R+1OJEmRl3ZOp9d8PbiRxGpnvmpi3jU+lzSqCJoLeogdEh0FYDRH1aC223qUbaKffxNTJkEfeDOeQfziw749yA=="; }; }; + "nlcst-is-literal-2.1.0" = { + name = "nlcst-is-literal"; + packageName = "nlcst-is-literal"; + version = "2.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/nlcst-is-literal/-/nlcst-is-literal-2.1.0.tgz"; + sha512 = "jaEIXvIreWx4lfkRa+B3toTTxQgDxnECncbEQVSUVfRWxamQFbRHgxyfrt0aMnuoq5AMd3CQHl5SHGGruOUOdQ=="; + }; + }; "nlcst-normalize-2.1.5" = { name = "nlcst-normalize"; packageName = "nlcst-normalize"; @@ -42637,6 +43987,15 @@ let sha512 = "xSqTKv8IHIy3n/orD7wj81BZljLfbrTot0Pv64MYUnQUXfDbi1xDSpJR4qEmbFWyFoHsmivcOdgrK+o7ky3mcw=="; }; }; + "nlcst-normalize-3.1.0" = { + name = "nlcst-normalize"; + packageName = "nlcst-normalize"; + version = "3.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/nlcst-normalize/-/nlcst-normalize-3.1.0.tgz"; + sha512 = "kRWfUwtffmU26wPAJ25St5rec29PhV8F6dKaa7PxGhH3uytsGakfLyOEEm1mULzWOdfyDb03aE+OKp7h0OJuhA=="; + }; + }; "nlcst-search-2.0.0" = { name = "nlcst-search"; packageName = "nlcst-search"; @@ -42646,6 +44005,15 @@ let sha512 = "+3xdctMFTcG+76vKAa0wObNg1EYq7IIQlZcL+HxSFXkHO1DgSPRjsPJrmelVIvMg7rk+wmBcdPEoScv/CTT1Zw=="; }; }; + "nlcst-search-3.1.0" = { + name = "nlcst-search"; + packageName = "nlcst-search"; + version = "3.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/nlcst-search/-/nlcst-search-3.1.0.tgz"; + sha512 = "d+0fXxF0d5oFAeeyuoGbIYcbiixE9Xt/lsmt491jjPyabXRoIRBE0++U+G8kbDyJFRk1bMQnGFpMCzeoMlDYfQ=="; + }; + }; "nlcst-to-string-2.0.4" = { name = "nlcst-to-string"; packageName = "nlcst-to-string"; @@ -42655,6 +44023,15 @@ let sha512 = "3x3jwTd6UPG7vi5k4GEzvxJ5rDA7hVUIRNHPblKuMVP9Z3xmlsd9cgLcpAMkc5uPOBna82EeshROFhsPkbnTZg=="; }; }; + "nlcst-to-string-3.1.0" = { + name = "nlcst-to-string"; + packageName = "nlcst-to-string"; + version = "3.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/nlcst-to-string/-/nlcst-to-string-3.1.0.tgz"; + sha512 = "Y8HQWKw/zrHTCnu2zcFBN1dV6vN0NUG7s5fkEj380G8tF3R+vA2KG+tDl2QoHVQCTHGHVXwoni2RQkDSFQb1PA=="; + }; + }; "no-case-2.3.2" = { name = "no-case"; packageName = "no-case"; @@ -42700,6 +44077,15 @@ let sha512 = "/2D0wOQPgaUWzVSVgRMx+trKJRC2UG4SUc4oCJoXx9Uxjtp0Vy3/kt7zcbxHF8+Z/pK3UloLWzBISg72brfy1w=="; }; }; + "node-abi-3.3.0" = { + name = "node-abi"; + packageName = "node-abi"; + version = "3.3.0"; + src = fetchurl { + url = "https://registry.npmjs.org/node-abi/-/node-abi-3.3.0.tgz"; + sha512 = "/+2sCVPXmj07GY/l0ggRr7+trqzX7F9d4QVfSArqIVYmRzc/LkXKr5FlRO6U8uZ/gVVclDDaBxBNITj1z1Z/Zw=="; + }; + }; "node-addon-api-1.7.2" = { name = "node-addon-api"; packageName = "node-addon-api"; @@ -42980,13 +44366,13 @@ let sha512 = "CbpcIo7C3eMu3dL1c3d0xw449fHIGALIJsRP4DDPHpyiW8vcriNY7ubh9TE4zEKfSxscY7PjeFnshE7h75ynjQ=="; }; }; - "node-gyp-8.3.0" = { + "node-gyp-8.4.0" = { name = "node-gyp"; packageName = "node-gyp"; - version = "8.3.0"; + version = "8.4.0"; src = fetchurl { - url = "https://registry.npmjs.org/node-gyp/-/node-gyp-8.3.0.tgz"; - sha512 = "e+vmKyTiybKgrmvs4M2REFKCnOd+NcrAAnn99Yko6NQA+zZdMlRvbIUHojfsHrSQ1CddLgZnHicnEVgDHziJzA=="; + url = "https://registry.npmjs.org/node-gyp/-/node-gyp-8.4.0.tgz"; + sha512 = "Bi/oCm5bH6F+FmzfUxJpPaxMEyIhszULGR3TprmTeku8/dMFcdTcypk120NeZqEt54r1BrgEKtm2jJiuIKE28Q=="; }; }; "node-gyp-build-3.9.0" = { @@ -43178,6 +44564,15 @@ let sha512 = "CqyzN6z7Q6aMeF/ktcMVTzhAHCEpf8SOarwpzpf8pNBY2k5/oM34UHldUwp8VKI7uxct2HxSRdJjBaZeESzcxA=="; }; }; + "node-rsa-1.1.1" = { + name = "node-rsa"; + packageName = "node-rsa"; + version = "1.1.1"; + src = fetchurl { + url = "https://registry.npmjs.org/node-rsa/-/node-rsa-1.1.1.tgz"; + sha512 = "Jd4cvbJMryN21r5HgxQOpMEqv+ooke/korixNNK3mGqfGJmy0M77WDDzo/05969+OkMy3XW1UuZsSmW9KQm7Fw=="; + }; + }; "node-ssdp-2.9.1" = { name = "node-ssdp"; packageName = "node-ssdp"; @@ -43511,6 +44906,15 @@ let sha512 = "9UZCFRHQdNrfTpGg8+1INIg93B6zE0aXMVFkw1WFwvO4SlZywU6aLg5Of0Ap/PgcbSw4LNxvMWXMeugwMCX0AA=="; }; }; + "normalize-url-5.3.1" = { + name = "normalize-url"; + packageName = "normalize-url"; + version = "5.3.1"; + src = fetchurl { + url = "https://registry.npmjs.org/normalize-url/-/normalize-url-5.3.1.tgz"; + sha512 = "K1c7+vaAP+Yh5bOGmA10PGPpp+6h7WZrl7GwqKhUflBc9flU9pzG27DDeB9+iuhZkE3BJZOcgN1P/2sS5pqrWw=="; + }; + }; "normalize-url-6.1.0" = { name = "normalize-url"; packageName = "normalize-url"; @@ -43664,6 +45068,15 @@ let sha512 = "Jt01acDvJRhJGthnUJVF/w6gumWOZxO7IkpY/lsX9//zqQgnF7OJaxgQXcerd4uQOLu7W5bkb4mChL9mdfm+Zg=="; }; }; + "npm-packlist-3.0.0" = { + name = "npm-packlist"; + packageName = "npm-packlist"; + version = "3.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/npm-packlist/-/npm-packlist-3.0.0.tgz"; + sha512 = "L/cbzmutAwII5glUcf2DBRNY/d0TFd4e/FnaZigJV6JD85RHZXJFGwCndjMWiiViiWSsWt3tiOLpI3ByTnIdFQ=="; + }; + }; "npm-pick-manifest-6.1.1" = { name = "npm-pick-manifest"; packageName = "npm-pick-manifest"; @@ -44178,6 +45591,15 @@ let sha512 = "YJjNZrlXJFM42wTBn6zgOJVar9KFJvzx6sTWDte8sWZF//cnjl0BxHNpfZx+ZffXX63A9q0b1zsFiBX4g4X5KA=="; }; }; + "object-sizeof-1.6.1" = { + name = "object-sizeof"; + packageName = "object-sizeof"; + version = "1.6.1"; + src = fetchurl { + url = "https://registry.npmjs.org/object-sizeof/-/object-sizeof-1.6.1.tgz"; + sha512 = "gNKGcRnDRXwEpAdwUY3Ef+aVZIrcQVXozSaVzHz6Pv4JxysH8vf5F+nIgsqW5T/YNwZNveh0mIW7PEH1O2MrDw=="; + }; + }; "object-to-arguments-0.0.8" = { name = "object-to-arguments"; packageName = "object-to-arguments"; @@ -44367,13 +45789,13 @@ let sha512 = "rH3U4eLHsV+OgkOS29ULiC9JLspwMCyCIH/+BglLPXDxQs13IK8AGD+nVmkGXqGN5JefZu85YhfIi05CsOKWPw=="; }; }; - "office-ui-fabric-react-7.178.1" = { + "office-ui-fabric-react-7.179.2" = { name = "office-ui-fabric-react"; packageName = "office-ui-fabric-react"; - version = "7.178.1"; + version = "7.179.2"; src = fetchurl { - url = "https://registry.npmjs.org/office-ui-fabric-react/-/office-ui-fabric-react-7.178.1.tgz"; - sha512 = "Uzllv7f0vjnpBRZGzF3uF70LVHCHOtKQY5bKn8z1FP0CKgMq6S2tCFMXTD0aBQm9qdFgsNc8HIl8RgOdRBaqnw=="; + url = "https://registry.npmjs.org/office-ui-fabric-react/-/office-ui-fabric-react-7.179.2.tgz"; + sha512 = "OIErGO8lLKOBbQPa/dfTXsWQR+Jp41ruSqA7kEcp6F2cBMzKS862Y8bIr0/SpUUzRhGLsaFIIc/UbCflOn1L5w=="; }; }; "omggif-1.0.10" = { @@ -44538,13 +45960,13 @@ let sha512 = "fvaSZRzprpwLFge/mcwE0CItfniNisVNamDdMK1FQUjh4ArQZ8ZWSkDaJbZc3XaANKZHq0xIa8NJpZ2HSe3oXA=="; }; }; - "oo-ascii-tree-1.42.0" = { + "oo-ascii-tree-1.43.0" = { name = "oo-ascii-tree"; packageName = "oo-ascii-tree"; - version = "1.42.0"; + version = "1.43.0"; src = fetchurl { - url = "https://registry.npmjs.org/oo-ascii-tree/-/oo-ascii-tree-1.42.0.tgz"; - sha512 = "qlynjsWdGidfoWT2uEIr0iNsNmHU2ZhKwtjpJw4VSd3jlxoDpWDDmd5cud/ZBhFT2F1UFSbz+Gl9YtlPYMgQ5Q=="; + url = "https://registry.npmjs.org/oo-ascii-tree/-/oo-ascii-tree-1.43.0.tgz"; + sha512 = "OjCQZnEi/ssOj5f7d3oILcTrzpKN9eWIWEpoEdRr+8NOdcLBGiXDdUYotIx/ajcjmRPjuoRtRT7NE6cKWWT/fA=="; }; }; "opal-runtime-1.0.11" = { @@ -44592,6 +46014,15 @@ let sha512 = "mgLwQIx2F/ye9SmbrUkurZCnkoXyXyu9EbHtJZrICjVAJfyMArdHp3KkixGdZx1ZHFPNIwl0DDM1dFFqXbTLZw=="; }; }; + "open-7.3.1" = { + name = "open"; + packageName = "open"; + version = "7.3.1"; + src = fetchurl { + url = "https://registry.npmjs.org/open/-/open-7.3.1.tgz"; + sha512 = "f2wt9DCBKKjlFbjzGb8MOAW8LH8F0mrs1zc7KTjAJ9PZNQbfenzWbNP1VZJvw6ICMG9r14Ah6yfwPn7T7i646A=="; + }; + }; "open-7.4.2" = { name = "open"; packageName = "open"; @@ -44610,15 +46041,6 @@ let sha512 = "jB5hAtsDOhCy/FNQJwQJOrGlxLUat482Yr14rbA5l2Zb1eOeoS+ccQPO036C1+z9VDBTmOZqzh1tBbI4myzIYw=="; }; }; - "open-8.2.1" = { - name = "open"; - packageName = "open"; - version = "8.2.1"; - src = fetchurl { - url = "https://registry.npmjs.org/open/-/open-8.2.1.tgz"; - sha512 = "rXILpcQlkF/QuFez2BJDf3GsqpjGKbkUUToAIGo9A0Q6ZkoSGogZJulrUdwRkrAsoQvoZsrjCYt8+zblOk7JQQ=="; - }; - }; "open-8.4.0" = { name = "open"; packageName = "open"; @@ -45114,6 +46536,15 @@ let sha512 = "5b6Y85tPxZZ7QytO+BQzysW31HJku27cRIlkbAXaNx+BdcVi+LlRFmVXzeF6a7JCwJpyw5c4b+YSVImQIrBpuQ=="; }; }; + "ora-6.0.1" = { + name = "ora"; + packageName = "ora"; + version = "6.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/ora/-/ora-6.0.1.tgz"; + sha512 = "TDdKkKHdWE6jo/6pIa5U5AWcSVfpNRFJ8sdRJpioGNVPLAzZzHs/N+QhUfF7ZbyoC+rnDuNTKzeDJUbAza9g4g=="; + }; + }; "ordered-read-streams-1.0.1" = { name = "ordered-read-streams"; packageName = "ordered-read-streams"; @@ -45663,6 +47094,15 @@ let sha512 = "+/wmHtzJuWii1sXn3HCuH/FTwGhrp4tmJTxSKJbfS+vkipci6osxXM5mY0jUiRzWKMTgUT8l7HFbeSwZAynqHw=="; }; }; + "p-transform-1.3.0" = { + name = "p-transform"; + packageName = "p-transform"; + version = "1.3.0"; + src = fetchurl { + url = "https://registry.npmjs.org/p-transform/-/p-transform-1.3.0.tgz"; + sha512 = "UJKdSzgd3KOnXXAtqN5+/eeHcvTn1hBkesEmElVgvO/NAYcxAvmjzIGmnNd3Tb/gRAvMBdNRFD4qAWdHxY6QXg=="; + }; + }; "p-try-1.0.0" = { name = "p-try"; packageName = "p-try"; @@ -45825,6 +47265,15 @@ let sha512 = "fT375Yczn4zi+6Hkk2TBe1x1sP8FgFsEIZ2/iWaXY2r/NkhDJfxbcn5paz1+RTFCyNf+dPnaoBDJoAxXSU8Bkg=="; }; }; + "pacote-12.0.2" = { + name = "pacote"; + packageName = "pacote"; + version = "12.0.2"; + src = fetchurl { + url = "https://registry.npmjs.org/pacote/-/pacote-12.0.2.tgz"; + sha512 = "Ar3mhjcxhMzk+OVZ8pbnXdb0l8+pimvlsqBGRNkble2NVgyqOGE3yrCGi/lAYq7E7NRDMz89R1Wx5HIMCGgeYg=="; + }; + }; "pad-0.0.5" = { name = "pad"; packageName = "pad"; @@ -45924,6 +47373,15 @@ let sha512 = "GQ2EWRpQV8/o+Aw8YqtfZZPfNRWZYkbidE9k5rpl/hC3vtHHBfGm2Ifi6qWV+coDGkrUKZAxE3Lot5kcsRlh+g=="; }; }; + "parent-module-2.0.0" = { + name = "parent-module"; + packageName = "parent-module"; + version = "2.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/parent-module/-/parent-module-2.0.0.tgz"; + sha512 = "uo0Z9JJeWzv8BG+tRcapBKNJ0dro9cLyczGzulS6EfeyAdeC9sbojtW6XwvYxJkEne9En+J2XEl4zyglVeIwFg=="; + }; + }; "parents-1.0.1" = { name = "parents"; packageName = "parents"; @@ -45996,6 +47454,15 @@ let sha512 = "jw5N6wZUZViIw3VLG/FUSeL3vDhfw5Q2g4E3nYC69Mm5ANbh9ZWd+eligQbeUoyObZM8neynTn3l14e09pjEWg=="; }; }; + "parse-english-5.0.0" = { + name = "parse-english"; + packageName = "parse-english"; + version = "5.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/parse-english/-/parse-english-5.0.0.tgz"; + sha512 = "sMe/JmsY6g21aJCAm8KgCH90a9zCZ7aGSriSJ5B0CcGEsDN7YmiCk3+1iKPE1heDG6zYY4Xf++V8llWtCvNBSQ=="; + }; + }; "parse-entities-1.2.2" = { name = "parse-entities"; packageName = "parse-entities"; @@ -46131,6 +47598,15 @@ let sha512 = "TYKL+K98dcAWoCw/Ac1yrPviU8Trk+/gmjQVaoWEFDZmVD4KRg6c/80xKqNNFQObo2mTONgF8trzAf2UTwKafw=="; }; }; + "parse-latin-5.0.0" = { + name = "parse-latin"; + packageName = "parse-latin"; + version = "5.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/parse-latin/-/parse-latin-5.0.0.tgz"; + sha512 = "Ht+4/+AUySMS5HKGAiQpBmkFsHSoGrj6Y83flLCa5OIBdtsVkO3UD4OtboJ0O0vZiOznH02x8qlwg9KLUVXuNg=="; + }; + }; "parse-ms-2.1.0" = { name = "parse-ms"; packageName = "parse-ms"; @@ -46653,6 +48129,15 @@ let sha512 = "LDJzPVEEEPR+y48z93A0Ed0yXb8pAByGWo/k5YYdYgpY2/2EsOsksJrq7lOHxryrVOn1ejG6oAp8ahvOIQD8sw=="; }; }; + "path-platform-0.0.1" = { + name = "path-platform"; + packageName = "path-platform"; + version = "0.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/path-platform/-/path-platform-0.0.1.tgz"; + sha1 = "b5585d7c3c463d89aa0060d86611cf1afd617e2a"; + }; + }; "path-platform-0.11.15" = { name = "path-platform"; packageName = "path-platform"; @@ -47409,6 +48894,15 @@ let sha512 = "t1Ax8KUvV3FFII8ltczPn2tJdjqbd1sIzu6t4JL7nQ3EyeL/lTrj5PWKb06ic5/6XYDr65rQ4uzQEGN70/6X5w=="; }; }; + "plur-4.0.0" = { + name = "plur"; + packageName = "plur"; + version = "4.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/plur/-/plur-4.0.0.tgz"; + sha512 = "4UGewrYgqDFw9vV6zNV+ADmPAUAfJPKtGvb/VdpQAx25X5f3xXdGdyOEVFwkl8Hl/tl7+xbeHqSEM+D5/TirUg=="; + }; + }; "pluralize-1.2.1" = { name = "pluralize"; packageName = "pluralize"; @@ -49048,6 +50542,15 @@ let sha512 = "fMyMQbKCxX51YxR7YGCzPjLsU3yDzXFkP4oi1/Mt5Ixnk7GO/7uUTj8mrCHUwuvozWzI+V7QSJR9cZYnwNOZPg=="; }; }; + "progbar-1.2.1" = { + name = "progbar"; + packageName = "progbar"; + version = "1.2.1"; + src = fetchurl { + url = "https://registry.npmjs.org/progbar/-/progbar-1.2.1.tgz"; + sha512 = "iEb0ZXmdQ24Pphdwa8+LbH75hMpuCMlPnsFUa3zHzDQj4kq4q72VGuD2pe3nwauKjxKgq3U0M9tCoLes6ISltw=="; + }; + }; "progress-1.1.8" = { name = "progress"; packageName = "progress"; @@ -49354,6 +50857,15 @@ let sha512 = "YUHSPk+A30YPv+0Qf8i9Mbfe/C0hdPXk1s1jPVToV8pk8BQtpw10ct89Eo7OWkutrwqvT0eicAxlOg3dOAu8JA=="; }; }; + "property-information-6.1.0" = { + name = "property-information"; + packageName = "property-information"; + version = "6.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/property-information/-/property-information-6.1.0.tgz"; + sha512 = "aTSKXRnBlDpqo6cHVuZ88oaW1XGjABV10cV8RhK7AwBRjX+/D/LqspUF9f+TFSprZwXAsdJhx3KaJCdj8xZygw=="; + }; + }; "proto-list-1.2.4" = { name = "proto-list"; packageName = "proto-list"; @@ -50119,13 +51631,13 @@ let sha1 = "03f4d7d19872fc1114161e88db6ecf4c65e61e56"; }; }; - "pull-notify-0.1.1" = { + "pull-notify-0.1.2" = { name = "pull-notify"; packageName = "pull-notify"; - version = "0.1.1"; + version = "0.1.2"; src = fetchurl { - url = "https://registry.npmjs.org/pull-notify/-/pull-notify-0.1.1.tgz"; - sha1 = "6f86ff95d270b89c3ebf255b6031b7032dc99cca"; + url = "https://registry.npmjs.org/pull-notify/-/pull-notify-0.1.2.tgz"; + sha512 = "oooAxYEUGNbOVsUrmqqTWWsAUMRIs4sYglnxgleiVcWyvrWgOuk/WUoZDajPTsYix2/rd+z5xSclzHLA7QygcQ=="; }; }; "pull-paginate-1.0.0" = { @@ -50524,13 +52036,13 @@ let sha1 = "15931d3cd967ade52206f523aa7331aef7d43af7"; }; }; - "pyright-1.1.184" = { + "pyright-1.1.186" = { name = "pyright"; packageName = "pyright"; - version = "1.1.184"; + version = "1.1.186"; src = fetchurl { - url = "https://registry.npmjs.org/pyright/-/pyright-1.1.184.tgz"; - sha512 = "SK/2cvIdj9hrkDasxVahK3Keo2fWgwN5phjwOyWGobW5KN1HLYWXQX335ls1FvC0ccWpGZfOBSmTWSu/JjpgFg=="; + url = "https://registry.npmjs.org/pyright/-/pyright-1.1.186.tgz"; + sha512 = "W5Ke8Lqop4HpabSMOTWRd6bRQx1i+PTAHENoa5RQHMsGV50y8WwmNOGcxeFixdz64UfXPO2Ye2XoR5wEz3JU8w=="; }; }; "q-0.9.7" = { @@ -50704,6 +52216,15 @@ let sha1 = "13e26d28ad6b0ffaa91312cd3bf708ed351e7233"; }; }; + "qs-6.5.1" = { + name = "qs"; + packageName = "qs"; + version = "6.5.1"; + src = fetchurl { + url = "https://registry.npmjs.org/qs/-/qs-6.5.1.tgz"; + sha512 = "eRzhrN1WSINYCDCbrz796z37LOe3m5tmW7RQf6oBntukAG1nmovJvhnwHHRMAfeoItc1m2Hk02WER2aQ/iqs+A=="; + }; + }; "qs-6.5.2" = { name = "qs"; packageName = "qs"; @@ -50758,6 +52279,15 @@ let sha512 = "XDxAeVmpfu1/6IjyT/gXHOl+S0vQ9owggJ30hhWKdHAsNPOcasn5o9BW0eejZqL2e4vMjhAxoW3jVHcD6mbcYw=="; }; }; + "query-string-7.0.1" = { + name = "query-string"; + packageName = "query-string"; + version = "7.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/query-string/-/query-string-7.0.1.tgz"; + sha512 = "uIw3iRvHnk9to1blJCG3BTc+Ro56CBowJXKmNNAm3RulvPBzWLRqKSiiDk+IplJhsydwtuNMHi8UGQFcCLVfkA=="; + }; + }; "querystring-0.2.0" = { name = "querystring"; packageName = "querystring"; @@ -50902,6 +52432,15 @@ let sha512 = "45gUgmX/RtQOQV1kwM06boP49OYXcKCPrYwdmAvs5YqkpiobhNKKwo524JM6Ma0ko3oN9tXNcWs9+ABq3Ry7YA=="; }; }; + "quotation-2.0.2" = { + name = "quotation"; + packageName = "quotation"; + version = "2.0.2"; + src = fetchurl { + url = "https://registry.npmjs.org/quotation/-/quotation-2.0.2.tgz"; + sha512 = "FeUlLe40ROXHVWLZkzmeR2PNYWdkvTXEXhW6FX8axRv1ODt8Gxed3APrE1Qb5i1n70ZzZGRmvs0jY3v/BRcJQQ=="; + }; + }; "quote-stream-1.0.2" = { name = "quote-stream"; packageName = "quote-stream"; @@ -51019,13 +52558,13 @@ let sha512 = "CdVAoFNNDn5uAgYOJ8J3ICSaFzaMOa95XnYcX+taj4jirJuRASiTyQSOGR+Z0K8ZkBGuj0A8ivyeRAWuxRCgQA=="; }; }; - "random-access-memory-3.1.2" = { + "random-access-memory-3.1.3" = { name = "random-access-memory"; packageName = "random-access-memory"; - version = "3.1.2"; + version = "3.1.3"; src = fetchurl { - url = "https://registry.npmjs.org/random-access-memory/-/random-access-memory-3.1.2.tgz"; - sha512 = "wIfh4OZ9T+FRNf6rbXLvEb4FfSxyZpvGnC5kC7Xi39SyPkRYfeJyR9Xwa13iLbNyoNKNIkTFUE4g9lXFb1ZflA=="; + url = "https://registry.npmjs.org/random-access-memory/-/random-access-memory-3.1.3.tgz"; + sha512 = "PTNiZXth70psEIZpmCivnBWzRyAsVyU9wDOfcDn7HvSADP2q7IY5KeTFCJJ3N0+DU0OxhMbjWD5n9udiyu3qsg=="; }; }; "random-access-storage-1.3.0" = { @@ -51037,13 +52576,13 @@ let sha512 = "pdS9Mcb9TB7oICypPRALlheaSuszuAKmLVEPKJMuYor7R/zDuHh5ALuQoS+ox31XRwQUL+tDwWH2GPdyspwelA=="; }; }; - "random-access-storage-1.4.1" = { + "random-access-storage-1.4.2" = { name = "random-access-storage"; packageName = "random-access-storage"; - version = "1.4.1"; + version = "1.4.2"; src = fetchurl { - url = "https://registry.npmjs.org/random-access-storage/-/random-access-storage-1.4.1.tgz"; - sha512 = "DbCc2TIzOxPaHF6KCbr8zLtiYOJQQQCBHUVNHV/SckUQobCBB2YkDtbLdxGnPwPNpJfEyMWxDAm36A2xkbxxtw=="; + url = "https://registry.npmjs.org/random-access-storage/-/random-access-storage-1.4.2.tgz"; + sha512 = "nW7UQGxcihvSLuK9PahoKL0jlmw2S6yGV8DsC85xHuUBLJrUoetRbQ5LzuXTt+FWp/iXgjp12x7zh55NNghaBg=="; }; }; "random-access-web-2.0.3" = { @@ -51181,6 +52720,15 @@ let sha1 = "a2c2f98c8531cee99c63d8d238b7de97bb659fca"; }; }; + "raw-body-2.3.2" = { + name = "raw-body"; + packageName = "raw-body"; + version = "2.3.2"; + src = fetchurl { + url = "https://registry.npmjs.org/raw-body/-/raw-body-2.3.2.tgz"; + sha1 = "bcd60c77d3eb93cde0050295c3f379389bc88f89"; + }; + }; "raw-body-2.3.3" = { name = "raw-body"; packageName = "raw-body"; @@ -52423,6 +53971,15 @@ let sha512 = "fOiR9a9xH+Le19i4fGzIEowAbwG7idy2Jzs4mOrFWBSJ0sNUgy0ev871dwWnbOo371SjgjG4pwzrbgSVrKxecw=="; }; }; + "rehype-parse-8.0.3" = { + name = "rehype-parse"; + packageName = "rehype-parse"; + version = "8.0.3"; + src = fetchurl { + url = "https://registry.npmjs.org/rehype-parse/-/rehype-parse-8.0.3.tgz"; + sha512 = "RGw0CVt+0S6KdvpE8bbP2Db9WXclQcIX7A0ufM3QFqAhTo/ddJMQrrI2j3cijlRPZlGK8R3pRgC8U5HyV76IDw=="; + }; + }; "rehype-retext-2.0.4" = { name = "rehype-retext"; packageName = "rehype-retext"; @@ -52432,6 +53989,15 @@ let sha512 = "OnGX5RE8WyEs/Snz+Bs8DM9uGdrNUXMhCC7CW3S1cIZVOC90VdewdE+71kpG6LOzS0xwgZyItwrhjGv+oQgwkQ=="; }; }; + "rehype-retext-3.0.1" = { + name = "rehype-retext"; + packageName = "rehype-retext"; + version = "3.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/rehype-retext/-/rehype-retext-3.0.1.tgz"; + sha512 = "ICGZwAkBQhOpKyHBUdiONhvIjd8Pliym6vJ25SCjKeua3UdWANNL9HqgNHToewwQhh8nmbGUZ4j4Cu0RihoBHQ=="; + }; + }; "rehype-sort-attribute-values-2.0.1" = { name = "rehype-sort-attribute-values"; packageName = "rehype-sort-attribute-values"; @@ -52549,6 +54115,15 @@ let sha512 = "mSuDd3svCHs+2PyO29h7iijIZx4plX0fheacJcAoYAASfgzgVIcXGYSq9GFyYocFLftQs8IOmmkgtOovs6d4oA=="; }; }; + "remark-frontmatter-4.0.1" = { + name = "remark-frontmatter"; + packageName = "remark-frontmatter"; + version = "4.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/remark-frontmatter/-/remark-frontmatter-4.0.1.tgz"; + sha512 = "38fJrB0KnmD3E33a5jZC/5+gGAC2WKNiPw1/fdXJvijBlhA7RCsvJklrYJakS0HedninvaCYW8lQGf9C918GfA=="; + }; + }; "remark-gfm-1.0.0" = { name = "remark-gfm"; packageName = "remark-gfm"; @@ -52558,6 +54133,15 @@ let sha512 = "KfexHJCiqvrdBZVbQ6RopMZGwaXz6wFJEfByIuEwGf0arvITHjiKKZ1dpXujjH9KZdm1//XJQwgfnJ3lmXaDPA=="; }; }; + "remark-gfm-3.0.1" = { + name = "remark-gfm"; + packageName = "remark-gfm"; + version = "3.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/remark-gfm/-/remark-gfm-3.0.1.tgz"; + sha512 = "lEFDoi2PICJyNrACFOfDD3JlLkuSbOa5Wd8EPt06HUdptv8Gn0bxYTdbU/XXQ3swAPkEaGxxPN9cbnMHvVu1Ig=="; + }; + }; "remark-html-2.0.2" = { name = "remark-html"; packageName = "remark-html"; @@ -52576,6 +54160,15 @@ let sha512 = "JBY6zz5fYQFN724Vq6VeiHwhyjVIlrww/dE1+hWGcDyUuz7YNCqwZKwBdQGDvslICkzHw/wEExNEb8D4PNiLlA=="; }; }; + "remark-lint-8.0.0" = { + name = "remark-lint"; + packageName = "remark-lint"; + version = "8.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/remark-lint/-/remark-lint-8.0.0.tgz"; + sha512 = "ESI8qJQ/TIRjABDnqoFsTiZntu+FRifZ5fJ77yX63eIDijl/arvmDvT+tAf75/Nm5BFL4R2JFUtkHRGVjzYUsg=="; + }; + }; "remark-lint-blockquote-indentation-1.0.4" = { name = "remark-lint-blockquote-indentation"; packageName = "remark-lint-blockquote-indentation"; @@ -52585,6 +54178,33 @@ let sha512 = "ExcDP7lufshEBNkVddSHa+Bz/97PtFstIniQ8ZF2TahHPmpx92z3mkI/nXL2Qt5d3B09eTVvh4Pvhgp6x2470g=="; }; }; + "remark-lint-blockquote-indentation-2.0.1" = { + name = "remark-lint-blockquote-indentation"; + packageName = "remark-lint-blockquote-indentation"; + version = "2.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/remark-lint-blockquote-indentation/-/remark-lint-blockquote-indentation-2.0.1.tgz"; + sha512 = "uJ9az/Ms9AapnkWpLSCJfawBfnBI2Tn1yUsPNqIFv6YM98ymetItUMyP6ng9NFPqDvTQBbiarulkgoEo0wcafQ=="; + }; + }; + "remark-lint-checkbox-character-style-3.0.0" = { + name = "remark-lint-checkbox-character-style"; + packageName = "remark-lint-checkbox-character-style"; + version = "3.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/remark-lint-checkbox-character-style/-/remark-lint-checkbox-character-style-3.0.0.tgz"; + sha512 = "691OJ5RdBRXVpvnOEiBhMB4uhHJSHVttw83O4qyAkNBiqxa1Axqhsz8FgmzYgRLQbOGd2ncVUcXG1LOJt6C0DQ=="; + }; + }; + "remark-lint-checkbox-content-indent-3.0.0" = { + name = "remark-lint-checkbox-content-indent"; + packageName = "remark-lint-checkbox-content-indent"; + version = "3.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/remark-lint-checkbox-content-indent/-/remark-lint-checkbox-content-indent-3.0.0.tgz"; + sha512 = "+T4+hoY85qZE2drD2rCe14vF7fAgD3Kv2fkFd1HRvv3M5Riy148w/4YeoBI5U5BpybGTVUeEUYLCeJ8zbJLjkw=="; + }; + }; "remark-lint-code-block-style-1.0.4" = { name = "remark-lint-code-block-style"; packageName = "remark-lint-code-block-style"; @@ -52594,6 +54214,15 @@ let sha512 = "Wq5F94nkaWTx8W/9C/ydG+DhVWLirBrWb0xnoMQ0cHnizAd3BWw8g0x5L7yglMYSUSVLWY0jfMHgOe9UW3JfTw=="; }; }; + "remark-lint-code-block-style-2.0.1" = { + name = "remark-lint-code-block-style"; + packageName = "remark-lint-code-block-style"; + version = "2.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/remark-lint-code-block-style/-/remark-lint-code-block-style-2.0.1.tgz"; + sha512 = "eRhmnColmSxJhO61GHZkvO67SpHDshVxs2j3+Zoc5Y1a4zQT2133ZAij04XKaBFfsVLjhbY/+YOWxgvtjx2nmA=="; + }; + }; "remark-lint-definition-case-1.0.5" = { name = "remark-lint-definition-case"; packageName = "remark-lint-definition-case"; @@ -52603,6 +54232,15 @@ let sha512 = "iirq74fKhJZsFw7x4FJuLVRkXclntutG1YKajfLaE3Gm14YlJWBEoabNTk+ENR4QXoB9rTdEqn3Cc3ImO8qciQ=="; }; }; + "remark-lint-definition-case-2.0.1" = { + name = "remark-lint-definition-case"; + packageName = "remark-lint-definition-case"; + version = "2.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/remark-lint-definition-case/-/remark-lint-definition-case-2.0.1.tgz"; + sha512 = "M+XlThtQwEJLQnQb5Gi6xZdkw92rGp7m2ux58WMw/Qlcg02WgHR/O0OcHPe5VO5hMJrtI+cGG5T0svsCgRZd3w=="; + }; + }; "remark-lint-definition-spacing-1.0.5" = { name = "remark-lint-definition-spacing"; packageName = "remark-lint-definition-spacing"; @@ -52612,6 +54250,24 @@ let sha512 = "ss8OQmK4c/1amEAJpDjkFiByLyXpsYFNzmk6rEZQkxZZd+DVHI0oF+CzSeMVHu48rF2qHOkKhVghqrCM0vleAA=="; }; }; + "remark-lint-definition-spacing-2.0.1" = { + name = "remark-lint-definition-spacing"; + packageName = "remark-lint-definition-spacing"; + version = "2.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/remark-lint-definition-spacing/-/remark-lint-definition-spacing-2.0.1.tgz"; + sha512 = "xK9DOQO5MudITD189VyUiMHBIKltW1oc55L7Fti3i9DedXoBG7Phm+V9Mm7IdWzCVkquZVgVk63xQdqzSQRrSQ=="; + }; + }; + "remark-lint-double-link-0.1.3" = { + name = "remark-lint-double-link"; + packageName = "remark-lint-double-link"; + version = "0.1.3"; + src = fetchurl { + url = "https://registry.npmjs.org/remark-lint-double-link/-/remark-lint-double-link-0.1.3.tgz"; + sha512 = "0zHUJimo0fNAqQPzwt6ii9pRYCxBU0wqilVlily1RxRyTqhy0ANgTQOERMaf+lkTEN1ADEeoyh9gE7VWzqI+WA=="; + }; + }; "remark-lint-emphasis-marker-1.0.4" = { name = "remark-lint-emphasis-marker"; packageName = "remark-lint-emphasis-marker"; @@ -52621,6 +54277,15 @@ let sha512 = "TdYISSw7Ib6EJDApDj9zcZNDCJEaEoQIrYS3+QH2TQxoDx96B0t1bbErRM5L/hx1UWPBpeFLKpgIWL163eMmYA=="; }; }; + "remark-lint-emphasis-marker-2.0.1" = { + name = "remark-lint-emphasis-marker"; + packageName = "remark-lint-emphasis-marker"; + version = "2.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/remark-lint-emphasis-marker/-/remark-lint-emphasis-marker-2.0.1.tgz"; + sha512 = "7mpbAUrSnHiWRyGkbXRL5kfSKY9Cs8cdob7Fw+Z02/pufXMF4yRWaegJ5NTUu1RE+SKlF44wtWWjvcIoyY6/aw=="; + }; + }; "remark-lint-fenced-code-flag-1.0.4" = { name = "remark-lint-fenced-code-flag"; packageName = "remark-lint-fenced-code-flag"; @@ -52639,6 +54304,15 @@ let sha512 = "aJF4ISIEvK3NX+C2rN93QoS/32SSiytQKRSeGa+HwsAn3sTwqmy2IoAwbFeZIZA2vqKcVB4h1b9yKamSlfX30Q=="; }; }; + "remark-lint-fenced-code-marker-2.0.1" = { + name = "remark-lint-fenced-code-marker"; + packageName = "remark-lint-fenced-code-marker"; + version = "2.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/remark-lint-fenced-code-marker/-/remark-lint-fenced-code-marker-2.0.1.tgz"; + sha512 = "lujpjm04enn3ma6lITlttadld6eQ1OWAEcT3qZzvFHp+zPraC0yr0eXlvtDN/0UH8mrln/QmGiZp3i8IdbucZg=="; + }; + }; "remark-lint-file-extension-1.0.5" = { name = "remark-lint-file-extension"; packageName = "remark-lint-file-extension"; @@ -52657,6 +54331,15 @@ let sha512 = "y9aDZPhqWcI7AtrJtL69HE6MoWMqDqLQUyWMadzAYUYb9/m4ciLdygJ4cWVpEN3n4mkBepHIsWzASaKHHBDJOQ=="; }; }; + "remark-lint-final-newline-1.0.5" = { + name = "remark-lint-final-newline"; + packageName = "remark-lint-final-newline"; + version = "1.0.5"; + src = fetchurl { + url = "https://registry.npmjs.org/remark-lint-final-newline/-/remark-lint-final-newline-1.0.5.tgz"; + sha512 = "rfLlW8+Fz2dqnaEgU4JwLA55CQF1T4mfSs/GwkkeUCGPenvEYwSkCN2KO2Gr1dy8qPoOdTFE1rSufLjmeTW5HA=="; + }; + }; "remark-lint-hard-break-spaces-1.0.5" = { name = "remark-lint-hard-break-spaces"; packageName = "remark-lint-hard-break-spaces"; @@ -52666,6 +54349,15 @@ let sha512 = "Rss7ujNtxipO/hasWYc0QdiO8D5VyliSwj3zAZ8GeDn0ix2KH+pY4/AJC7i9IGcVVbUGvvXLpJB3Pp1VeY7oKw=="; }; }; + "remark-lint-hard-break-spaces-2.0.1" = { + name = "remark-lint-hard-break-spaces"; + packageName = "remark-lint-hard-break-spaces"; + version = "2.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/remark-lint-hard-break-spaces/-/remark-lint-hard-break-spaces-2.0.1.tgz"; + sha512 = "Qfn/BMQFamHhtbfLrL8Co/dbYJFLRL4PGVXZ5wumkUO5f9FkZC2RsV+MD9lisvGTkJK0ZEJrVVeaPbUIFM0OAw=="; + }; + }; "remark-lint-heading-increment-1.0.4" = { name = "remark-lint-heading-increment"; packageName = "remark-lint-heading-increment"; @@ -52684,6 +54376,15 @@ let sha512 = "ASssbw0vj9urTMxDJGpOn4K7d9MgPQPJGaCD+7v7je42krofvqC4CxpYvO/fOAkRZcttE91VfFHxkaPjiBtQLw=="; }; }; + "remark-lint-heading-style-2.0.1" = { + name = "remark-lint-heading-style"; + packageName = "remark-lint-heading-style"; + version = "2.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/remark-lint-heading-style/-/remark-lint-heading-style-2.0.1.tgz"; + sha512 = "IrFLNs0M5Vbn9qg51AYhGUfzgLAcDOjh2hFGMz3mx664dV6zLcNZOPSdJBBJq3JQR4gKpoXcNwN1+FFaIATj+A=="; + }; + }; "remark-lint-link-title-style-1.0.5" = { name = "remark-lint-link-title-style"; packageName = "remark-lint-link-title-style"; @@ -52693,6 +54394,24 @@ let sha512 = "Nu0cKj220q/PmUzELhYRUR2uxXabWuFJq9sApkgsc59uh+NKDtCEdpxkx7Zwvn6kUEwpuQVimeRfdesiKxX52g=="; }; }; + "remark-lint-link-title-style-2.0.1" = { + name = "remark-lint-link-title-style"; + packageName = "remark-lint-link-title-style"; + version = "2.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/remark-lint-link-title-style/-/remark-lint-link-title-style-2.0.1.tgz"; + sha512 = "+Q7Ew8qpOQzjqbDF6sUHmn9mKgje+m2Ho8Xz7cEnGIRaKJgtJzkn/dZqQM/az0gn3zaN6rOuwTwqw4EsT5EsIg=="; + }; + }; + "remark-lint-list-item-bullet-indent-3.0.0" = { + name = "remark-lint-list-item-bullet-indent"; + packageName = "remark-lint-list-item-bullet-indent"; + version = "3.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/remark-lint-list-item-bullet-indent/-/remark-lint-list-item-bullet-indent-3.0.0.tgz"; + sha512 = "X2rleWP8XReC4LXKF7Qi5vYiPJkA4Grx5zxsjHofFrVRz6j0PYOCuz7vsO+ZzMunFMfom6FODnscSWz4zouDVw=="; + }; + }; "remark-lint-list-item-content-indent-1.0.4" = { name = "remark-lint-list-item-content-indent"; packageName = "remark-lint-list-item-content-indent"; @@ -52702,6 +54421,15 @@ let sha512 = "zfEeAayZjEKkPr07fnhkGLENxOhnm0WZJTj6UBIXhtGu7rX23WNKSZaiou8iUoHxcO6ySCvIUJAEmq/XN1FxkQ=="; }; }; + "remark-lint-list-item-content-indent-2.0.1" = { + name = "remark-lint-list-item-content-indent"; + packageName = "remark-lint-list-item-content-indent"; + version = "2.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/remark-lint-list-item-content-indent/-/remark-lint-list-item-content-indent-2.0.1.tgz"; + sha512 = "OzUMqavxyptAdG7vWvBSMc9mLW9ZlTjbW4XGayzczd3KIr6Uwp3NEFXKx6MLtYIM/vwBqMrPQUrObOC7A2uBpQ=="; + }; + }; "remark-lint-list-item-indent-1.0.5" = { name = "remark-lint-list-item-indent"; packageName = "remark-lint-list-item-indent"; @@ -52711,6 +54439,15 @@ let sha512 = "DjRgxjqaVMrnlQFJypizTPtLa9gSM5ad0LVIFDSstV2UVXSgpBi2+bSsFJEXb4Fkjo/d2JAgt27UhzhcoF2lnw=="; }; }; + "remark-lint-list-item-indent-2.0.1" = { + name = "remark-lint-list-item-indent"; + packageName = "remark-lint-list-item-indent"; + version = "2.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/remark-lint-list-item-indent/-/remark-lint-list-item-indent-2.0.1.tgz"; + sha512 = "4IKbA9GA14Q9PzKSQI6KEHU/UGO36CSQEjaDIhmb9UOhyhuzz4vWhnSIsxyI73n9nl9GGRAMNUSGzr4pQUFwTA=="; + }; + }; "remark-lint-list-item-spacing-1.1.4" = { name = "remark-lint-list-item-spacing"; packageName = "remark-lint-list-item-spacing"; @@ -52720,6 +54457,15 @@ let sha512 = "zZELzTPYCoOCnOWh/nYTfQWnGXWg4/I5KpwrjBqe7WYwoMtvLVU9mqjRj2jHEbmirEXas54NZnYnkCoIBMS4bw=="; }; }; + "remark-lint-match-punctuation-0.2.1" = { + name = "remark-lint-match-punctuation"; + packageName = "remark-lint-match-punctuation"; + version = "0.2.1"; + src = fetchurl { + url = "https://registry.npmjs.org/remark-lint-match-punctuation/-/remark-lint-match-punctuation-0.2.1.tgz"; + sha512 = "XgarnmpBHMsCNRnhTNLf/8dDe5/gXdA/mQnBDPG/XZFNMebS6GFnWQpuL3cyzLmuWD62I1A5ouZczRZcrWYrTQ=="; + }; + }; "remark-lint-maximum-heading-length-1.0.4" = { name = "remark-lint-maximum-heading-length"; packageName = "remark-lint-maximum-heading-length"; @@ -52747,6 +54493,15 @@ let sha512 = "dhDHQLeaI79p7SRoKfxJ9c8J5otQsGua7ILeNbs2Onzn46/tp9ir6zjq3Lfh4VJJr4OVign2e8u+MzXsS7Uu/A=="; }; }; + "remark-lint-no-auto-link-without-protocol-2.0.1" = { + name = "remark-lint-no-auto-link-without-protocol"; + packageName = "remark-lint-no-auto-link-without-protocol"; + version = "2.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/remark-lint-no-auto-link-without-protocol/-/remark-lint-no-auto-link-without-protocol-2.0.1.tgz"; + sha512 = "TFcXxzucsfBb/5uMqGF1rQA+WJJqm1ZlYQXyvJEXigEZ8EAxsxZGPb/gOQARHl/y0vymAuYxMTaChavPKaBqpQ=="; + }; + }; "remark-lint-no-blockquote-without-marker-2.0.4" = { name = "remark-lint-no-blockquote-without-marker"; packageName = "remark-lint-no-blockquote-without-marker"; @@ -52756,6 +54511,15 @@ let sha512 = "a5LFGj7It2z7aBRGaAcztk4D2pax2b7dK9iOarIWv/JBus/PSjZJxzZCma2aAAOQhv3wbNTwqQwuQC0UJHMbPg=="; }; }; + "remark-lint-no-blockquote-without-marker-4.0.0" = { + name = "remark-lint-no-blockquote-without-marker"; + packageName = "remark-lint-no-blockquote-without-marker"; + version = "4.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/remark-lint-no-blockquote-without-marker/-/remark-lint-no-blockquote-without-marker-4.0.0.tgz"; + sha512 = "Y59fMqdygRVFLk1gpx2Qhhaw5IKOR9T38Wf7pjR07bEFBGUNfcoNVIFMd1TCJfCPQxUyJzzSqfZz/KT7KdUuiQ=="; + }; + }; "remark-lint-no-consecutive-blank-lines-1.0.4" = { name = "remark-lint-no-consecutive-blank-lines"; packageName = "remark-lint-no-consecutive-blank-lines"; @@ -52783,6 +54547,24 @@ let sha512 = "gnsInLxTkc59eVD3/qelFagD/NcrMPKXT1sy7i4e8D2jqQyrIHHl0p3TfiyNNt8qIjKMKhlIii4k4kVk/3Mczg=="; }; }; + "remark-lint-no-emphasis-as-heading-2.0.1" = { + name = "remark-lint-no-emphasis-as-heading"; + packageName = "remark-lint-no-emphasis-as-heading"; + version = "2.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/remark-lint-no-emphasis-as-heading/-/remark-lint-no-emphasis-as-heading-2.0.1.tgz"; + sha512 = "z86+yWtVivtuGIxIC4g9RuATbgZgOgyLcnaleonJ7/HdGTYssjJNyqCJweaWSLoaI0akBQdDwmtJahW5iuX3/g=="; + }; + }; + "remark-lint-no-empty-sections-4.0.0" = { + name = "remark-lint-no-empty-sections"; + packageName = "remark-lint-no-empty-sections"; + version = "4.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/remark-lint-no-empty-sections/-/remark-lint-no-empty-sections-4.0.0.tgz"; + sha512 = "Tx1nCu7Dq3dsJ500402sSvM0uVK/6khSuEjx8K8u9aHN+Y4vjL6h88xVzdzCmZq2J2yqyFnvMjG1y7lQv+DRvg=="; + }; + }; "remark-lint-no-file-name-articles-1.0.5" = { name = "remark-lint-no-file-name-articles"; packageName = "remark-lint-no-file-name-articles"; @@ -52828,6 +54610,24 @@ let sha512 = "rT8CmcIlenegS0Yst4maYXdZfqIjBOiRUY8j/KJkORF5tKH+3O1/S07025qPGmcRihzK3w4yO0K8rgkKQw0b9w=="; }; }; + "remark-lint-no-heading-content-indent-3.0.0" = { + name = "remark-lint-no-heading-content-indent"; + packageName = "remark-lint-no-heading-content-indent"; + version = "3.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/remark-lint-no-heading-content-indent/-/remark-lint-no-heading-content-indent-3.0.0.tgz"; + sha512 = "yULDoVSIqKylLDfW6mVUbrHlyEWUSFtVFiKc+/BA412xDIhm8HZLUnP+FsuBC0OzbIZ+bO9Txy52WtO3LGnK1A=="; + }; + }; + "remark-lint-no-heading-indent-3.0.0" = { + name = "remark-lint-no-heading-indent"; + packageName = "remark-lint-no-heading-indent"; + version = "3.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/remark-lint-no-heading-indent/-/remark-lint-no-heading-indent-3.0.0.tgz"; + sha512 = "b8ImhLv2AnRDxtYUODplzsl/7IwQ+lqRmD1bwbZgSerEP9MLaULW3SjH37EyA6z+8rCDjvEyppKKU6zec0TCjg=="; + }; + }; "remark-lint-no-heading-punctuation-1.0.4" = { name = "remark-lint-no-heading-punctuation"; packageName = "remark-lint-no-heading-punctuation"; @@ -52837,6 +54637,15 @@ let sha512 = "++/HXg/qtVssJjzq2ZgEreoxaazw9KkYrAbTDImKV7Fypo+7bZFELUvFicq0/i9qwAwt1tvhkKtLYt1W/sr1JQ=="; }; }; + "remark-lint-no-heading-punctuation-2.0.1" = { + name = "remark-lint-no-heading-punctuation"; + packageName = "remark-lint-no-heading-punctuation"; + version = "2.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/remark-lint-no-heading-punctuation/-/remark-lint-no-heading-punctuation-2.0.1.tgz"; + sha512 = "lY/eF6GbMeGu4cSuxfGHyvaQQBIq/6T/o+HvAR5UfxSTxmxZFwbZneAI2lbeR1zPcqOU87NsZ5ZZzWVwdLpPBw=="; + }; + }; "remark-lint-no-inline-padding-1.0.5" = { name = "remark-lint-no-inline-padding"; packageName = "remark-lint-no-inline-padding"; @@ -52846,6 +54655,15 @@ let sha512 = "AjS34hBRasYiIAKZJ7/9U42LouRHok2WVTRdQPcVtRBswStNOuot59S+FRsatqlk1wvMmjytqxUKQfVTSeu9ag=="; }; }; + "remark-lint-no-inline-padding-3.0.0" = { + name = "remark-lint-no-inline-padding"; + packageName = "remark-lint-no-inline-padding"; + version = "3.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/remark-lint-no-inline-padding/-/remark-lint-no-inline-padding-3.0.0.tgz"; + sha512 = "3s9uW3Yux9RFC0xV81MQX3bsYs+UY7nPnRuMxeIxgcVwxQ4E/mTJd9QjXUwBhU9kdPtJ5AalngdmOW2Tgar8Cg=="; + }; + }; "remark-lint-no-literal-urls-1.0.4" = { name = "remark-lint-no-literal-urls"; packageName = "remark-lint-no-literal-urls"; @@ -52864,6 +54682,24 @@ let sha512 = "RZ1YPxRO7Bo8mT+A36cZ7nx2QHFAKk+oE6j87YrZYpAKr2oF6snKS8nIGhVku4PSI/9cW1G12MZz1cAA5rcjFw=="; }; }; + "remark-lint-no-multiple-toplevel-headings-2.0.1" = { + name = "remark-lint-no-multiple-toplevel-headings"; + packageName = "remark-lint-no-multiple-toplevel-headings"; + version = "2.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/remark-lint-no-multiple-toplevel-headings/-/remark-lint-no-multiple-toplevel-headings-2.0.1.tgz"; + sha512 = "VKSItR6c+u3OsE5pUiSmNusERNyQS9Nnji26ezoQ1uvy06k3RypIjmzQqJ/hCkSiF+hoyC3ibtrrGT8gorzCmQ=="; + }; + }; + "remark-lint-no-repeat-punctuation-0.1.4" = { + name = "remark-lint-no-repeat-punctuation"; + packageName = "remark-lint-no-repeat-punctuation"; + version = "0.1.4"; + src = fetchurl { + url = "https://registry.npmjs.org/remark-lint-no-repeat-punctuation/-/remark-lint-no-repeat-punctuation-0.1.4.tgz"; + sha512 = "JJduCs4FimdBcR1AB576SqIYOjt+7t8OjTnnlZMvjnw7lzkuL0+nNNHyNXVPaK6jxaLjEUhrH2/smU6vZFUT7g=="; + }; + }; "remark-lint-no-shell-dollars-1.0.4" = { name = "remark-lint-no-shell-dollars"; packageName = "remark-lint-no-shell-dollars"; @@ -52873,6 +54709,15 @@ let sha512 = "YXFj8FUVTKkVvoAbFY3zv1Ol7Kj1i+qdze3pXSgRG61y1LpfL8/HpnvFrseMbBmNw6o4WpjTo7GoArngJ1sCeg=="; }; }; + "remark-lint-no-shell-dollars-2.0.2" = { + name = "remark-lint-no-shell-dollars"; + packageName = "remark-lint-no-shell-dollars"; + version = "2.0.2"; + src = fetchurl { + url = "https://registry.npmjs.org/remark-lint-no-shell-dollars/-/remark-lint-no-shell-dollars-2.0.2.tgz"; + sha512 = "zhkHZOuyaD3r/TUUkkVqW0OxsR9fnSrAnHIF63nfJoAAUezPOu8D1NBsni6rX8H2DqGbPYkoeWrNsTwiKP0yow=="; + }; + }; "remark-lint-no-shortcut-reference-image-1.0.4" = { name = "remark-lint-no-shortcut-reference-image"; packageName = "remark-lint-no-shortcut-reference-image"; @@ -52900,6 +54745,51 @@ let sha512 = "eE1GL+IzU3vtHdYCKHCZEIhCwiwCM7UH+pMDIMpGfH2LB3cB/Nrfbiz9xadGkARKqxxDMsJSBZDw4A/01IU+kA=="; }; }; + "remark-lint-no-table-indentation-3.0.0" = { + name = "remark-lint-no-table-indentation"; + packageName = "remark-lint-no-table-indentation"; + version = "3.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/remark-lint-no-table-indentation/-/remark-lint-no-table-indentation-3.0.0.tgz"; + sha512 = "+l7GovI6T+3LhnTtz/SmSRyOb6Fxy6tmaObKHrwb/GAebI/4MhFS1LVo3vbiP/RpPYtyQoFbbuXI55hqBG4ibQ=="; + }; + }; + "remark-lint-no-undefined-references-3.0.0" = { + name = "remark-lint-no-undefined-references"; + packageName = "remark-lint-no-undefined-references"; + version = "3.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/remark-lint-no-undefined-references/-/remark-lint-no-undefined-references-3.0.0.tgz"; + sha512 = "0hzaJS9GuzSQVOeeNdJr/s66LRQOzp618xuOQPYWHcJdd+SCaRTyWbjMrTM/cCI5L1sYjgurp410NkIBQ32Vqg=="; + }; + }; + "remark-lint-no-unneeded-full-reference-image-2.0.1" = { + name = "remark-lint-no-unneeded-full-reference-image"; + packageName = "remark-lint-no-unneeded-full-reference-image"; + version = "2.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/remark-lint-no-unneeded-full-reference-image/-/remark-lint-no-unneeded-full-reference-image-2.0.1.tgz"; + sha512 = "ZqkrW6l/n1EmcGdtzBFoDygG2ehd/Wx46Id9Dagg15oLzwvbhp5mJIXArXU2qGrF82w1hfainCaZzyH/OBJtEg=="; + }; + }; + "remark-lint-no-unneeded-full-reference-link-2.0.1" = { + name = "remark-lint-no-unneeded-full-reference-link"; + packageName = "remark-lint-no-unneeded-full-reference-link"; + version = "2.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/remark-lint-no-unneeded-full-reference-link/-/remark-lint-no-unneeded-full-reference-link-2.0.1.tgz"; + sha512 = "OcPQiG6meVpvfydzxkxPdVc8jcXdklQW4gMjY2BevLtVoaIJ+dgNBPazyYHP/0EzpVY2RftD3CZ+5hiLW2rgpA=="; + }; + }; + "remark-lint-no-unused-definitions-2.0.1" = { + name = "remark-lint-no-unused-definitions"; + packageName = "remark-lint-no-unused-definitions"; + version = "2.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/remark-lint-no-unused-definitions/-/remark-lint-no-unused-definitions-2.0.1.tgz"; + sha512 = "+BMc0BOjc364SvKYLkspmxDch8OaKPbnUGgQBvK0Bmlwy42baR4C9zhwAWBxm0SBy5Z4AyM4G4jKpLXPH40Oxg=="; + }; + }; "remark-lint-ordered-list-marker-style-1.0.4" = { name = "remark-lint-ordered-list-marker-style"; packageName = "remark-lint-ordered-list-marker-style"; @@ -52909,6 +54799,15 @@ let sha512 = "c6AIqeePzm3nfkPCbTdwBS3/AQICgwE76+ryOc7tsSq4ulyK/Nt8Syvi/oiHYuonBddZoGtFTNCn0jqen9qscA=="; }; }; + "remark-lint-ordered-list-marker-style-2.0.1" = { + name = "remark-lint-ordered-list-marker-style"; + packageName = "remark-lint-ordered-list-marker-style"; + version = "2.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/remark-lint-ordered-list-marker-style/-/remark-lint-ordered-list-marker-style-2.0.1.tgz"; + sha512 = "Cnpw1Dn9CHn+wBjlyf4qhPciiJroFOEGmyfX008sQ8uGoPZsoBVIJx76usnHklojSONbpjEDcJCjnOvfAcWW1A=="; + }; + }; "remark-lint-ordered-list-marker-value-1.0.5" = { name = "remark-lint-ordered-list-marker-value"; packageName = "remark-lint-ordered-list-marker-value"; @@ -52918,6 +54817,15 @@ let sha512 = "eKepbNNfu9rEuG8WvV0sc7B+KiPMgq5Nc9baAxL9Hi6mhpj347YFWXxJUNttSINS13YTpnHxPvXmF9SzhjFKNQ=="; }; }; + "remark-lint-ordered-list-marker-value-2.0.1" = { + name = "remark-lint-ordered-list-marker-value"; + packageName = "remark-lint-ordered-list-marker-value"; + version = "2.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/remark-lint-ordered-list-marker-value/-/remark-lint-ordered-list-marker-value-2.0.1.tgz"; + sha512 = "blt9rS7OKxZ2NW8tqojELeyNEwPhhTJGVa+YpUkdEH+KnrdcD7Nzhnj6zfLWOx6jFNZk3jpq5nvLFAPteHaNKg=="; + }; + }; "remark-lint-rule-style-1.0.4" = { name = "remark-lint-rule-style"; packageName = "remark-lint-rule-style"; @@ -52927,6 +54835,15 @@ let sha512 = "omr5P6CCvo2zixCzK9uiGZpwzOE+4rc+95kWH95k2iA6Rp8Qohp8RK4unSRKLtFYGUhSbiQPgWaQXHDxMkWczg=="; }; }; + "remark-lint-rule-style-2.0.1" = { + name = "remark-lint-rule-style"; + packageName = "remark-lint-rule-style"; + version = "2.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/remark-lint-rule-style/-/remark-lint-rule-style-2.0.1.tgz"; + sha512 = "hz4Ff9UdlYmtO6Czz99WJavCjqCer7Cav4VopXt+yVIikObw96G5bAuLYcVS7hvMUGqC9ZuM02/Y/iq9n8pkAg=="; + }; + }; "remark-lint-strong-marker-1.0.4" = { name = "remark-lint-strong-marker"; packageName = "remark-lint-strong-marker"; @@ -52936,6 +54853,15 @@ let sha512 = "X9f6yhZ85cdP0cmCgkqlbxllpeQ60pS9Qqk9Jb9SZo6f95esaHptQ5bExb1ZVXzhSHz2Xz86tUhXtzG3zGFD4g=="; }; }; + "remark-lint-strong-marker-2.0.1" = { + name = "remark-lint-strong-marker"; + packageName = "remark-lint-strong-marker"; + version = "2.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/remark-lint-strong-marker/-/remark-lint-strong-marker-2.0.1.tgz"; + sha512 = "8X2IsW1jZ5FmW9PLfQjkL0OVy/J3xdXLcZrG1GTeQKQ91BrPFyEZqUM2oM6Y4S6LGtxWer+neZkPZNroZoRPBQ=="; + }; + }; "remark-lint-table-cell-padding-1.0.5" = { name = "remark-lint-table-cell-padding"; packageName = "remark-lint-table-cell-padding"; @@ -52945,6 +54871,15 @@ let sha512 = "N/WpcymrGBSPbLiv2OQTvdzNn6H9ctdyEA+P/odn4G9FqyrLmeTMkGJuGtinU569hLG/RtHqZIDeFVDiYi8Wzw=="; }; }; + "remark-lint-table-cell-padding-3.0.0" = { + name = "remark-lint-table-cell-padding"; + packageName = "remark-lint-table-cell-padding"; + version = "3.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/remark-lint-table-cell-padding/-/remark-lint-table-cell-padding-3.0.0.tgz"; + sha512 = "sEKrbyFZPZpxI39R8/r+CwUrin9YtyRwVn0SQkNQEZWZcIpylK+bvoKIldvLIXQPob+ZxklL0GPVRzotQMwuWQ=="; + }; + }; "remark-lint-table-pipe-alignment-1.0.4" = { name = "remark-lint-table-pipe-alignment"; packageName = "remark-lint-table-pipe-alignment"; @@ -52954,6 +54889,15 @@ let sha512 = "pmELEOXeUjMQedyVvOtZcTCnTu6FxZ4gfBskMx6iJhOFEEKTFOmviqlKLpndPBxFNZB86AiE0C00/NvAaut8dw=="; }; }; + "remark-lint-table-pipe-alignment-2.0.1" = { + name = "remark-lint-table-pipe-alignment"; + packageName = "remark-lint-table-pipe-alignment"; + version = "2.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/remark-lint-table-pipe-alignment/-/remark-lint-table-pipe-alignment-2.0.1.tgz"; + sha512 = "O89U7bp0ja6uQkT2uQrNB76GaPvFabrHiUGhqEUnld21yEdyj7rgS57kn84lZNSuuvN1Oor6bDyCwWQGzzpoOQ=="; + }; + }; "remark-lint-table-pipes-1.0.4" = { name = "remark-lint-table-pipes"; packageName = "remark-lint-table-pipes"; @@ -52963,6 +54907,15 @@ let sha512 = "0fdnoiiSLIPd/76gNvQY4pg27d8HkMmmv5gCGfD+Z/Si9DdpbJdq93U0kX+Botb3+/4VEDIlcU7Cp5HXppMTWA=="; }; }; + "remark-lint-table-pipes-3.0.0" = { + name = "remark-lint-table-pipes"; + packageName = "remark-lint-table-pipes"; + version = "3.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/remark-lint-table-pipes/-/remark-lint-table-pipes-3.0.0.tgz"; + sha512 = "QPokSazEdl0Y8ayUV9UB0Ggn3Jos/RAQwIo0z1KDGnJlGDiF80Jc6iU9RgDNUOjlpQffSLIfSVxH5VVYF/K3uQ=="; + }; + }; "remark-lint-unordered-list-marker-style-1.0.4" = { name = "remark-lint-unordered-list-marker-style"; packageName = "remark-lint-unordered-list-marker-style"; @@ -52972,6 +54925,15 @@ let sha512 = "lcuG1J74VGTT4gl8oH33HpkHrqorxjxMlJnBupLFrVowqvJ2hAq8yPJdGZ7P46uZOYw+Xz+Qv08bF8A73PNWxQ=="; }; }; + "remark-lint-unordered-list-marker-style-2.0.1" = { + name = "remark-lint-unordered-list-marker-style"; + packageName = "remark-lint-unordered-list-marker-style"; + version = "2.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/remark-lint-unordered-list-marker-style/-/remark-lint-unordered-list-marker-style-2.0.1.tgz"; + sha512 = "8KIDJNDtgbymEvl3LkrXgdxPMTOndcux3BHhNGB2lU4UnxSpYeHsxcDgirbgU6dqCAfQfvMjPvfYk19QTF9WZA=="; + }; + }; "remark-mdx-2.0.0-next.7" = { name = "remark-mdx"; packageName = "remark-mdx"; @@ -53017,6 +54979,24 @@ let sha512 = "k9bt7BYc3G7YBdmeAhvd3VavrPa/XlKWR3CyHjr4sLO9xJyly8WHHT3Sp+8HPR8lEUv+/sZaffL7IjMLV0f6BA=="; }; }; + "remark-message-control-7.1.1" = { + name = "remark-message-control"; + packageName = "remark-message-control"; + version = "7.1.1"; + src = fetchurl { + url = "https://registry.npmjs.org/remark-message-control/-/remark-message-control-7.1.1.tgz"; + sha512 = "xKRWl1NTBOKed0oEtCd8BUfH5m4s8WXxFFSoo7uUwx6GW/qdCy4zov5LfPyw7emantDmhfWn5PdIZgcbVcWMDQ=="; + }; + }; + "remark-parse-10.0.0" = { + name = "remark-parse"; + packageName = "remark-parse"; + version = "10.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/remark-parse/-/remark-parse-10.0.0.tgz"; + sha512 = "07ei47p2Xl7Bqbn9H2VYQYirnAFJPwdMuypdozWsSbnmrkgA2e2sZLZdnDNrrsxR4onmIzH/J6KXqKxCuqHtPQ=="; + }; + }; "remark-parse-4.0.0" = { name = "remark-parse"; packageName = "remark-parse"; @@ -53089,6 +55069,15 @@ let sha512 = "cYCchalpf25bTtfXF24ribYvqytPKq0TiEhqQDBHvVEEsApebwruPWP1cTcvTFBidmpXyqzycm+y8ng7Kmvc8Q=="; }; }; + "remark-retext-5.0.1" = { + name = "remark-retext"; + packageName = "remark-retext"; + version = "5.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/remark-retext/-/remark-retext-5.0.1.tgz"; + sha512 = "h3kOjKNy7oJfohqXlKp+W4YDigHD3rw01x91qvQP/cUkK5nJrDl6yEYwTujQCAXSLZrsBxywlK3ntzIX6c29aA=="; + }; + }; "remark-stringify-4.0.0" = { name = "remark-stringify"; packageName = "remark-stringify"; @@ -53503,13 +55492,13 @@ let sha512 = "YanoyJjykPxGHii0fZP0uUPEXpvqfBDxWV7s6GKAiiOsiqhX6vHNyW3Qzdmqp/iq/ExbhaGbVrjB4ruEVSM4GQ=="; }; }; - "reselect-4.1.1" = { + "reselect-4.1.2" = { name = "reselect"; packageName = "reselect"; - version = "4.1.1"; + version = "4.1.2"; src = fetchurl { - url = "https://registry.npmjs.org/reselect/-/reselect-4.1.1.tgz"; - sha512 = "Jjt8Us6hAWJpjucyladHvUGR+q1mHHgWtGDXlhvvKyNyIeQ3bjuWLDX0bsTLhbm/gd4iXEACBlODUHBlLWiNnA=="; + url = "https://registry.npmjs.org/reselect/-/reselect-4.1.2.tgz"; + sha512 = "wg60ebcPOtxcptIUfrr7Jt3h4BR86cCW3R7y4qt65lnNb4yz4QgrXcbSioVsIOYguyz42+XTHIyJ5TEruzkFgQ=="; }; }; "reserved-words-0.1.2" = { @@ -53719,6 +55708,15 @@ let sha1 = "d4b13d82f287e77e2eb5daae14e6ef8534aa7389"; }; }; + "restify-clients-1.6.0" = { + name = "restify-clients"; + packageName = "restify-clients"; + version = "1.6.0"; + src = fetchurl { + url = "https://registry.npmjs.org/restify-clients/-/restify-clients-1.6.0.tgz"; + sha1 = "1eaac176185162104dcc546f944950b70229f8e5"; + }; + }; "restify-errors-3.0.0" = { name = "restify-errors"; packageName = "restify-errors"; @@ -53764,6 +55762,15 @@ let sha512 = "l+sSefzHpj5qimhFSE5a8nufZYAM3sBSVMAPtYkmC+4EH2anSGaEMXSD0izRQbu9nfyQ9y5JrVmp7E8oZrUjvA=="; }; }; + "restore-cursor-4.0.0" = { + name = "restore-cursor"; + packageName = "restore-cursor"; + version = "4.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/restore-cursor/-/restore-cursor-4.0.0.tgz"; + sha512 = "I9fPXU9geO9bHOt9pHHOhOkYerIMsmVaWB0rA2AI9ERh/+x/i7MV5HKBNrg+ljO5eoPVgCcnFuRjJ9uH6I/3eg=="; + }; + }; "resumer-0.0.0" = { name = "resumer"; packageName = "resumer"; @@ -53809,6 +55816,15 @@ let sha512 = "yr1PgaBDde+25aJXrnt3p1jvT8FVLVat2Bx8XeAWX13KXo8OT+3nWGU3HWxM4YFJvmfqvJYJZG2d7xxaO774gw=="; }; }; + "retext-english-4.1.0" = { + name = "retext-english"; + packageName = "retext-english"; + version = "4.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/retext-english/-/retext-english-4.1.0.tgz"; + sha512 = "Pky2idjvgkzfodO0GH9X4IU8LX/d4ULTnLf7S1WsBRlSCh/JdTFPafXZstJqZehtQWNHrgoCqVOiGugsNFYvIQ=="; + }; + }; "retext-equality-5.5.0" = { name = "retext-equality"; packageName = "retext-equality"; @@ -53818,6 +55834,15 @@ let sha512 = "ha7zrQ+Bq4xWifm21IcAzc9xhMWCJYfePUjRRNE2mXi8cFhaq1F8+cD78YA2nd6W2mxd11VGTVKY9O0DmzEywQ=="; }; }; + "retext-equality-6.3.0" = { + name = "retext-equality"; + packageName = "retext-equality"; + version = "6.3.0"; + src = fetchurl { + url = "https://registry.npmjs.org/retext-equality/-/retext-equality-6.3.0.tgz"; + sha512 = "HmwH06qUlmCNQZZBY7Kkljbqc9isGTVwpm5WedpkfklB2dy+suyUUF1X0Zn3VbcaUlh7DfYrzpaJAtvOkML/eA=="; + }; + }; "retext-latin-2.0.4" = { name = "retext-latin"; packageName = "retext-latin"; @@ -53836,6 +55861,15 @@ let sha512 = "40Ym0WOgy7rRY4tR2iL01g3Y5Ql+9NBV21hycIhNX3uv+6vjaWB30NWN+tTcxNIWBJEwXHoTDMiVdAMm6ZpHVA=="; }; }; + "retext-profanities-7.1.0" = { + name = "retext-profanities"; + packageName = "retext-profanities"; + version = "7.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/retext-profanities/-/retext-profanities-7.1.0.tgz"; + sha512 = "TeqYTbm3n8YLeswe+OVEB/s7TjJEvWMNzoypoXRSRY4mcEMdnBv2uRbkYBBv2+UWTJ3uXD2y94oEu9syeD1NQQ=="; + }; + }; "retext-spell-2.4.1" = { name = "retext-spell"; packageName = "retext-spell"; @@ -54097,6 +56131,15 @@ let sha512 = "d5gdPmgQ0Z+AklL2NVXr/IoSjNZFfTVvQWzL/AM2AOcSzYP2xjlb0AC8YyCLc41MSNf6P6QVtjgPdmVtzb+4lQ=="; }; }; + "rmfr-2.0.0" = { + name = "rmfr"; + packageName = "rmfr"; + version = "2.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/rmfr/-/rmfr-2.0.0.tgz"; + sha512 = "nQptLCZeyyJfgbpf2x97k5YE8vzDn7bhwx9NlvODdhgbU0mL1ruh71X0HYdRaOEvWC7Cr+SfV0p5p+Ib5yOl7A=="; + }; + }; "rndm-1.2.0" = { name = "rndm"; packageName = "rndm"; @@ -55384,6 +57427,15 @@ let sha1 = "290cbb232e306942d7d7ea9b83732ab7856f8285"; }; }; + "setprototypeof-1.0.3" = { + name = "setprototypeof"; + packageName = "setprototypeof"; + version = "1.0.3"; + src = fetchurl { + url = "https://registry.npmjs.org/setprototypeof/-/setprototypeof-1.0.3.tgz"; + sha1 = "66567e37043eeb4f04d91bd658c0cbefb55b8e04"; + }; + }; "setprototypeof-1.1.0" = { name = "setprototypeof"; packageName = "setprototypeof"; @@ -55717,6 +57769,15 @@ let sha512 = "oXF8tfxx5cDk8r2kYqlkUJzZpDBqVY/II2WhvU0n9Y3XYvAYRmeaf1PvvIvTgPnv4KJ+ES5M0PyDq5Jp+Ygy2g=="; }; }; + "showdown-1.4.4" = { + name = "showdown"; + packageName = "showdown"; + version = "1.4.4"; + src = fetchurl { + url = "https://registry.npmjs.org/showdown/-/showdown-1.4.4.tgz"; + sha1 = "6805e569551e3122926f9d8f069f4e36c56f380a"; + }; + }; "shuffled-priority-queue-2.1.0" = { name = "shuffled-priority-queue"; packageName = "shuffled-priority-queue"; @@ -56203,13 +58264,13 @@ let sha512 = "tf+h5W1IrjNm/9rKKj0JU2MDMruiopx0jjVA5zCdBtcGjfp0+c5rHw/zADLC3IeKlGHtVbHtpfzvYA0OYT+HKg=="; }; }; - "slugify-1.6.1" = { + "slugify-1.6.2" = { name = "slugify"; packageName = "slugify"; - version = "1.6.1"; + version = "1.6.2"; src = fetchurl { - url = "https://registry.npmjs.org/slugify/-/slugify-1.6.1.tgz"; - sha512 = "5ofqMTbetNhxlzjYYLBaZFQd6oiTuSkQlyfPEFIMwgUABlZQ0hbk5xIV9Ydd5jghWeRoO7GkiJliUvTpLOjNRA=="; + url = "https://registry.npmjs.org/slugify/-/slugify-1.6.2.tgz"; + sha512 = "XMtI8qD84LwCpthLMBHlIhcrj10cgA+U/Ot8G6FD6uFuWZtMfKK75JO7l81nzpFJsPlsW6LT+VKqWQJW3+6New=="; }; }; "smart-buffer-4.2.0" = { @@ -56239,6 +58300,15 @@ let sha1 = "42d45710e791deb92df91326c8eed1bd5a842cb6"; }; }; + "smartdc-auth-2.5.8" = { + name = "smartdc-auth"; + packageName = "smartdc-auth"; + version = "2.5.8"; + src = fetchurl { + url = "https://registry.npmjs.org/smartdc-auth/-/smartdc-auth-2.5.8.tgz"; + sha512 = "hLdVp5vqzrEEJSAQKSmURvBVImQj9oVbp7zBP6JLEmSenUGhc6kl9nrSXUj14JHiQcnKF80eRAWPsdUcV6YXFw=="; + }; + }; "snabbdom-0.7.0" = { name = "snabbdom"; packageName = "snabbdom"; @@ -56383,13 +58453,13 @@ let sha512 = "tLkaY13RcO4nIRh1K2hT5iuotfTaIQw7cVIe0FUykN3SuQi0cm7ALxuyT5/CtDswOMWUzMGTibxYNx/gU7In+Q=="; }; }; - "socket.io-4.3.1" = { + "socket.io-4.3.2" = { name = "socket.io"; packageName = "socket.io"; - version = "4.3.1"; + version = "4.3.2"; src = fetchurl { - url = "https://registry.npmjs.org/socket.io/-/socket.io-4.3.1.tgz"; - sha512 = "HC5w5Olv2XZ0XJ4gOLGzzHEuOCfj3G0SmoW3jLHYYh34EVsIr3EkW9h6kgfW+K3TFEcmYy8JcPWe//KUkBp5jA=="; + url = "https://registry.npmjs.org/socket.io/-/socket.io-4.3.2.tgz"; + sha512 = "6S5tV4jcY6dbZ/lLzD6EkvNWI3s81JO6ABP/EpvOlK1NPOcIj3AS4khi6xXw6JlZCASq82HQV4SapfmVMMl2dg=="; }; }; "socket.io-adapter-0.2.0" = { @@ -56644,13 +58714,13 @@ let sha512 = "Uk+JpqHEbzsEmiMxwL7TB/ndhMEpc52KdReYXXSIX2oRFPaI7ZDlDImF8KbkFWbYl9BJRtc82AZ/kNf4/0n9KA=="; }; }; - "sodium-javascript-0.7.3" = { + "sodium-javascript-0.7.4" = { name = "sodium-javascript"; packageName = "sodium-javascript"; - version = "0.7.3"; + version = "0.7.4"; src = fetchurl { - url = "https://registry.npmjs.org/sodium-javascript/-/sodium-javascript-0.7.3.tgz"; - sha512 = "J2Zzj61bo41oBO4yEM9hTaNo3J98AcmFctjRg3D7+0A5cXdB1jlQOHV1qo2NavDU3BpqCfxdHW5UXCv565zh6Q=="; + url = "https://registry.npmjs.org/sodium-javascript/-/sodium-javascript-0.7.4.tgz"; + sha512 = "YUkucU81C0SUYzxcFFLOupOj89BlKA8MU8iTc7vTtd9hwgM/Awxwzz3tuoLGLHhnMxotUBB7Xl0rBeSoIn2yGQ=="; }; }; "sodium-native-2.4.9" = { @@ -56941,6 +59011,15 @@ let sha512 = "q/JSVd1Lptzhf5bkYm4ob4iWPjx0KiRe3sRFBNrVqbJkFaBm5vbbowy1mymoPNLRa52+oadOhJ+K49wsSeSjTA=="; }; }; + "space-separated-tokens-2.0.1" = { + name = "space-separated-tokens"; + packageName = "space-separated-tokens"; + version = "2.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/space-separated-tokens/-/space-separated-tokens-2.0.1.tgz"; + sha512 = "ekwEbFp5aqSPKaqeY1PGrlGQxPNaq+Cnx4+bE2D8sciBQrHpbwoBbawqTN2+6jPs9IdWxxiUcN0K2pkczD3zmw=="; + }; + }; "spago-0.20.3" = { name = "spago"; packageName = "spago"; @@ -57004,6 +59083,15 @@ let sha1 = "ff4ae6e68656056ba4b3e792ab3334d38273ca11"; }; }; + "spawn-command-0.0.2" = { + name = "spawn-command"; + packageName = "spawn-command"; + version = "0.0.2"; + src = fetchurl { + url = "https://registry.npmjs.org/spawn-command/-/spawn-command-0.0.2.tgz"; + sha1 = "9544e1a43ca045f8531aac1a48cb29bdae62338e"; + }; + }; "spawn-please-1.0.0" = { name = "spawn-please"; packageName = "spawn-please"; @@ -57454,13 +59542,13 @@ let sha512 = "pJAFizB6OcuJLX4RJJuU9HWyPwM2CqLi/vs08lhVIR3TGxacxpavvK5LzbxT+Y3iWkBchOTKS5hHCigA5aaung=="; }; }; - "ssb-db2-2.7.0" = { + "ssb-db2-2.7.2" = { name = "ssb-db2"; packageName = "ssb-db2"; - version = "2.7.0"; + version = "2.7.2"; src = fetchurl { - url = "https://registry.npmjs.org/ssb-db2/-/ssb-db2-2.7.0.tgz"; - sha512 = "uC9PfvwISpR4VUDs4vUaR0GdhAsYRlay4pEYf501hmI9XUPcga6jtp7I+JgS5B1ZA5WDshC0uQjgBr67hHmwEA=="; + url = "https://registry.npmjs.org/ssb-db2/-/ssb-db2-2.7.2.tgz"; + sha512 = "TJ1N2Sf39DlQHyT7E8KoQ8Oft+73SuoP75cVlCeyDxCUhNKVUKL+7Eu7ln2YOZsOF0DnZfw3VZ55l+iJwtvLiQ=="; }; }; "ssb-ebt-5.6.7" = { @@ -57760,13 +59848,13 @@ let sha512 = "zZ/Q1M+9ZWlrchgh4QauD/MEUFa6eC6H6FYq6T8Of/y82JqsQBLwN6YlzbO09evE7Rx6x0oliXDCnQSjwGwQRA=="; }; }; - "sscaff-1.2.115" = { + "sscaff-1.2.125" = { name = "sscaff"; packageName = "sscaff"; - version = "1.2.115"; + version = "1.2.125"; src = fetchurl { - url = "https://registry.npmjs.org/sscaff/-/sscaff-1.2.115.tgz"; - sha512 = "bEjTWtrXR+fOgJ9Oak+zP4DXUBWl3GmZ03QVLkL+/LC8SkfC+1p/+wcMWo2fij9HVTXlhsEgDnDyL7x0BFXf4A=="; + url = "https://registry.npmjs.org/sscaff/-/sscaff-1.2.125.tgz"; + sha512 = "RSlu5c9aD7+PvFVprE/NEqNs94gRqO5vXlzpXLfY6P8G9q65cXuEmjZUTT8x4D2ee93ILfrk/SKDfjGnCjazTw=="; }; }; "ssh-config-1.1.6" = { @@ -57823,6 +59911,15 @@ let sha512 = "zR4GV5XYSypCusFzfTeTSXVqrFJJsK79Ec2KXZdo/x7qxBGSJPPZFtqMcqpXPaJ9VCK7Zn/vI+/kMrqeQILv4w=="; }; }; + "sshpk-agent-1.8.1" = { + name = "sshpk-agent"; + packageName = "sshpk-agent"; + version = "1.8.1"; + src = fetchurl { + url = "https://registry.npmjs.org/sshpk-agent/-/sshpk-agent-1.8.1.tgz"; + sha512 = "YzAzemVrXEf1OeZUpveXLeYUT5VVw/I5gxLeyzq1aMS3pRvFvCeaGliNFjKR3VKtGXRqF9WamqKwYadIG6vStQ=="; + }; + }; "ssri-5.3.0" = { name = "ssri"; packageName = "ssri"; @@ -58246,6 +60343,15 @@ let sha512 = "y+ChhCov2A5nDqC2aZ6HKXs3OvDlvAp0Ps3BF1P/Iv8tUZJQQsMVaSzk0WryVTVoGITKv01UYahCXMpAs7I0lQ=="; }; }; + "stream-json-1.7.3" = { + name = "stream-json"; + packageName = "stream-json"; + version = "1.7.3"; + src = fetchurl { + url = "https://registry.npmjs.org/stream-json/-/stream-json-1.7.3.tgz"; + sha512 = "Y6dXn9KKWSwxOqnvHGcdZy1PK+J+7alBwHCeU3W9oRqm4ilLRA0XSPmd1tWwhg7tv9EIxJTMWh7KF15tYelKJg=="; + }; + }; "stream-meter-1.0.4" = { name = "stream-meter"; packageName = "stream-meter"; @@ -59209,6 +61315,15 @@ let sha512 = "cVqd/URpp7si1HWu5YqQ3vqQkjuolAwHypY1B4itPlS71/lsf6TQPZ2Y0ijT22EYVkvH5ove9JFJf4u7VGPuZw=="; }; }; + "subscriptions-transport-ws-0.9.18" = { + name = "subscriptions-transport-ws"; + packageName = "subscriptions-transport-ws"; + version = "0.9.18"; + src = fetchurl { + url = "https://registry.npmjs.org/subscriptions-transport-ws/-/subscriptions-transport-ws-0.9.18.tgz"; + sha512 = "tztzcBTNoEbuErsVQpTN2xUNN/efAZXyCyL5m3x4t6SKrEiTL2N8SaKWBFWM4u56pL79ULif3zjyeq+oV+nOaA=="; + }; + }; "subscriptions-transport-ws-0.9.19" = { name = "subscriptions-transport-ws"; packageName = "subscriptions-transport-ws"; @@ -59443,6 +61558,15 @@ let sha512 = "MpUEN2OodtUzxvKQl72cUF7RQ5EiHsGvSsVG0ia9c5RbWGL2CI4C7EpPS8UTBIplnlzZiNuV56w+FuNxy3ty2Q=="; }; }; + "supports-color-9.0.2" = { + name = "supports-color"; + packageName = "supports-color"; + version = "9.0.2"; + src = fetchurl { + url = "https://registry.npmjs.org/supports-color/-/supports-color-9.0.2.tgz"; + sha512 = "ii6tc8ImGFrgMPYq7RVAMKkhPo9vk8uA+D3oKbJq/3Pk2YSMv1+9dUAesa9UxMbxBTvxwKTQffBahNVNxEvM8Q=="; + }; + }; "supports-hyperlinks-1.0.1" = { name = "supports-hyperlinks"; packageName = "supports-hyperlinks"; @@ -59776,13 +61900,22 @@ let sha512 = "33+lQwlLxXoxy0o9WLOgw8OjbXeS3Jv+pSl+nxKc2AOClBI28HsdRPpH0u9Xa9OVjHLT9vonnOMw1ug7YXI0dA=="; }; }; - "systeminformation-5.9.9" = { + "systeminformation-5.9.11" = { name = "systeminformation"; packageName = "systeminformation"; - version = "5.9.9"; + version = "5.9.11"; src = fetchurl { - url = "https://registry.npmjs.org/systeminformation/-/systeminformation-5.9.9.tgz"; - sha512 = "xciy6NKCLfs4dqMD1Tdlo7v1/g0NfdA1EKsIptUQjlcVvpwHyjifAbNOF7ppFezGSMXxYE8me+l2+RlFF4lyTg=="; + url = "https://registry.npmjs.org/systeminformation/-/systeminformation-5.9.11.tgz"; + sha512 = "lvNC6ZpIyVJAlYeug/QH0N6L59iX1/YqxdXjNbemGlhI43FSd4fHFr+DyIlpKjSlzawR/1W3YwrTYuUNai1N5A=="; + }; + }; + "sywac-1.3.0" = { + name = "sywac"; + packageName = "sywac"; + version = "1.3.0"; + src = fetchurl { + url = "https://registry.npmjs.org/sywac/-/sywac-1.3.0.tgz"; + sha512 = "LDt2stNTp4bVPMgd70Jj9PWrSa4batl+bv+Ea5NLNGT7ufc4oQPtRfQ73wbddNV6RilaPqnEt6y1Wkm5FVTNEg=="; }; }; "table-3.8.3" = { @@ -59830,6 +61963,15 @@ let sha512 = "UFZK67uvyNivLeQbVtkiUs8Uuuxv24aSL4/Vil2PJVtMgU8Lx0CYkP12uCGa3kjyQzOSgV1+z9Wkb82fCGsO0g=="; }; }; + "table-6.7.3" = { + name = "table"; + packageName = "table"; + version = "6.7.3"; + src = fetchurl { + url = "https://registry.npmjs.org/table/-/table-6.7.3.tgz"; + sha512 = "5DkIxeA7XERBqMwJq0aHZOdMadBx4e6eDoFRuyT5VR82J0Ycg2DwM6GfA/EQAhJ+toRTaS1lIdSQCqgrmhPnlw=="; + }; + }; "table-layout-0.4.5" = { name = "table-layout"; packageName = "table-layout"; @@ -60389,13 +62531,13 @@ let sha512 = "3qAQpykRTD5DReLu5/cwpsg7EZFzP3Q0Hp2XUWJUw2mpq2jfgOKTZr8IZKKnNieRVVo1UauROTdhbQJZveGKtQ=="; }; }; - "terser-webpack-plugin-5.2.4" = { + "terser-webpack-plugin-5.2.5" = { name = "terser-webpack-plugin"; packageName = "terser-webpack-plugin"; - version = "5.2.4"; + version = "5.2.5"; src = fetchurl { - url = "https://registry.npmjs.org/terser-webpack-plugin/-/terser-webpack-plugin-5.2.4.tgz"; - sha512 = "E2CkNMN+1cho04YpdANyRrn8CyN4yMy+WdFKZIySFZrGXZxJwJP6PMNGGc/Mcr6qygQHUUqRxnAPmi0M9f00XA=="; + url = "https://registry.npmjs.org/terser-webpack-plugin/-/terser-webpack-plugin-5.2.5.tgz"; + sha512 = "3luOVHku5l0QBeYS8r4CdHYWEGMmIj3H1U64jgkdZzECcSOJAyJ9TjuqcQZvw1Y+4AOBN9SeYJPJmFn2cM4/2g=="; }; }; "test-exclude-6.0.0" = { @@ -61181,6 +63323,15 @@ let sha512 = "BxX8EkCxOAZe+D/ToHdDsJcVI4HqQfmw0tCkp31zf3dNP/XWIAjU4CmeuSwsSoOzOTqHPOL0KUzyZqJplkD0Qw=="; }; }; + "to-vfile-7.2.2" = { + name = "to-vfile"; + packageName = "to-vfile"; + version = "7.2.2"; + src = fetchurl { + url = "https://registry.npmjs.org/to-vfile/-/to-vfile-7.2.2.tgz"; + sha512 = "7WL+coet3qyaYb5vrVrfLtOUHgNv9E1D5SIsyVKmHKcgZefy77WMQRk7FByqGKNInoHOlY6xkTGymo29AwjUKg=="; + }; + }; "toidentifier-1.0.0" = { name = "toidentifier"; packageName = "toidentifier"; @@ -61649,6 +63800,15 @@ let sha512 = "rvuRbTarPXmMb79SmzEp8aqXNKcK+y0XaB298IXueQ8I2PsrATcPBCSPyK/dDNa2iWOhKlfNnOjdAOTBU/nkFA=="; }; }; + "trough-2.0.2" = { + name = "trough"; + packageName = "trough"; + version = "2.0.2"; + src = fetchurl { + url = "https://registry.npmjs.org/trough/-/trough-2.0.2.tgz"; + sha512 = "FnHq5sTMxC0sk957wHDzRnemFnNBvt/gSY99HzK8F7UP5WAbvP70yX5bd7CjEQkN+TjdxwI7g7lJ6podqrG2/w=="; + }; + }; "truncate-2.1.0" = { name = "truncate"; packageName = "truncate"; @@ -62252,6 +64412,15 @@ let sha512 = "yGSza74xk0UG8k+pLh5oeoYirvIiWo5t0/o3zHHAO2tRDiZcxWP7fywNlXhqb6/r6sWvwi+RsyQMWhVLe4BVuA=="; }; }; + "type-fest-2.5.3" = { + name = "type-fest"; + packageName = "type-fest"; + version = "2.5.3"; + src = fetchurl { + url = "https://registry.npmjs.org/type-fest/-/type-fest-2.5.3.tgz"; + sha512 = "7VNmE7FlsrdcWjKbtuRuynZz96Gmf35p5DvoR2tbceNP0vd58ISx87PvUUInlhtRC49vSX6qlxEKc7AoiHRirg=="; + }; + }; "type-is-1.6.18" = { name = "type-is"; packageName = "type-is"; @@ -62324,13 +64493,13 @@ let sha512 = "7uc1O8h1M1g0rArakJdf0uLRSSgFcYexrVoKo+bzJd32gd4gDy2L/Z+8/FjPnU9ydY3pEnVPtr9FyscYY60K1g=="; }; }; - "typegram-3.4.3" = { + "typegram-3.5.1" = { name = "typegram"; packageName = "typegram"; - version = "3.4.3"; + version = "3.5.1"; src = fetchurl { - url = "https://registry.npmjs.org/typegram/-/typegram-3.4.3.tgz"; - sha512 = "pH0TQJzCWM2+7y6yiBoQVNt7PO9ZvAu/lQukVx4sm68FIBBZEBWI+2MzuMcdbwrD5mD5NrEMAyml9N6DupUZag=="; + url = "https://registry.npmjs.org/typegram/-/typegram-3.5.1.tgz"; + sha512 = "cDCj4KMycgpdoDihK9LbJbLBBrZdDDQskR4aeoLawyk6YS2GXmr4jncGQGvu6Wav1iNTGvSDwr4b3ipLHh1edA=="; }; }; "typescript-2.9.2" = { @@ -62846,6 +65015,15 @@ let sha512 = "Ft16BJcnapDKp0+J/rqFC3Rrk6Y/Ng4nzsC028k2jdDII/rdZ7Wd3pPT/6+vIIxRagwRc9K0IUX0Ra4fKvw+WQ=="; }; }; + "unherit-3.0.0" = { + name = "unherit"; + packageName = "unherit"; + version = "3.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/unherit/-/unherit-3.0.0.tgz"; + sha512 = "UmvIQZGEc9qdLIQ8mv8/61n6PiMgfbOoASPKHpCvII5srShCQSa6jSjBjlZOR4bxt2XnT6uo6csmPKRi+zQ0Jg=="; + }; + }; "uni-global-1.0.0" = { name = "uni-global"; packageName = "uni-global"; @@ -62918,6 +65096,15 @@ let sha1 = "afb10e4ef1eeddc711417bbb652bc885da9d4171"; }; }; + "unified-10.1.0" = { + name = "unified"; + packageName = "unified"; + version = "10.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/unified/-/unified-10.1.0.tgz"; + sha512 = "4U3ru/BRXYYhKbwXV6lU6bufLikoAavTwev89H5UxY8enDFaAT2VXmIXYNm6hb5oHPng/EXr77PVyDFcptbk5g=="; + }; + }; "unified-2.1.4" = { name = "unified"; packageName = "unified"; @@ -62972,6 +65159,15 @@ let sha512 = "d29qhcADmrvjgSYDLDUmmE/zvVyKUW+O3gRz6Bjj7fcv8kGBlrYBmMjnuBI+wuTou/PXaVl3hPeSh9mXZ0iGSA=="; }; }; + "unified-diff-4.0.1" = { + name = "unified-diff"; + packageName = "unified-diff"; + version = "4.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/unified-diff/-/unified-diff-4.0.1.tgz"; + sha512 = "qiI0GaHi/50NVrChnmZOBeB0aNhHRMG6VnjKEAikaQD/I3gxjTsDp8gycCOUxyVCJrV/Rv3y6zEWMZczO+o3Lw=="; + }; + }; "unified-engine-6.0.1" = { name = "unified-engine"; packageName = "unified-engine"; @@ -62990,6 +65186,15 @@ let sha512 = "ZlMm62ejrf+tJHdyOjQfljszngQjRor95q2XZMGk6rpJUYi7ZIHY/EXEhOcj9PZkMKKdLIM+dqL4s0ceyk9wbA=="; }; }; + "unified-engine-9.0.4" = { + name = "unified-engine"; + packageName = "unified-engine"; + version = "9.0.4"; + src = fetchurl { + url = "https://registry.npmjs.org/unified-engine/-/unified-engine-9.0.4.tgz"; + sha512 = "NFI+jC3DWZ23eBsWkOW2havz47DPG/DSyJEvBH+qA5cQHF6zlgiJYev7ksb/naOypZZ+cfhaCxCRo2BqrysYEw=="; + }; + }; "unified-lint-rule-1.0.6" = { name = "unified-lint-rule"; packageName = "unified-lint-rule"; @@ -63017,6 +65222,15 @@ let sha512 = "oY5z2n8ugjpNHXOmcgrw0pQeJzavHS0VjPBP21tOcm7rc2C+5Q+kW9j5+gqtf8vfW/8sabbsK5+P+9QPwwEHDA=="; }; }; + "unified-message-control-4.0.0" = { + name = "unified-message-control"; + packageName = "unified-message-control"; + version = "4.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/unified-message-control/-/unified-message-control-4.0.0.tgz"; + sha512 = "1b92N+VkPHftOsvXNOtkJm4wHlr+UDmTBF2dUzepn40oy9NxanJ9xS1RwUBTjXJwqr2K0kMbEyv1Krdsho7+Iw=="; + }; + }; "union-0.5.0" = { name = "union"; packageName = "union"; @@ -63143,6 +65357,24 @@ let sha512 = "xaTC/AGZ0rIM2gM28YVRAFPIZpzbpDtU3dRmp7EXlNVA8ziQc4hY3H7BHXM1J49nEmiqc3svnqMReW+PGqbZKQ=="; }; }; + "unist-util-find-all-before-3.0.1" = { + name = "unist-util-find-all-before"; + packageName = "unist-util-find-all-before"; + version = "3.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/unist-util-find-all-before/-/unist-util-find-all-before-3.0.1.tgz"; + sha512 = "00YMzXOOu4z/qCHKQI6z7TeERAbIBda0E/1sZqP0cJdGd3d1OtUPvQlMhNCwz4QBFo//GcW2dHOYXPdu3jINdA=="; + }; + }; + "unist-util-find-all-between-2.1.0" = { + name = "unist-util-find-all-between"; + packageName = "unist-util-find-all-between"; + version = "2.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/unist-util-find-all-between/-/unist-util-find-all-between-2.1.0.tgz"; + sha512 = "OCCUtDD8UHKeODw3TPXyFDxPCbpgBzbGTTaDpR68nvxkwiVcawBqMVrokfBMvUi7ij2F5q7S4s4Jq5dvkcBt+w=="; + }; + }; "unist-util-generated-1.1.6" = { name = "unist-util-generated"; packageName = "unist-util-generated"; @@ -63170,6 +65402,15 @@ let sha512 = "fPNWewS593JSmg49HbnE86BJKuBi1/nMWhDSccBvbARfxezEuJV85EaARR9/VplveiwCoLm2kWq+DhP8TBaDpw=="; }; }; + "unist-util-inspect-7.0.0" = { + name = "unist-util-inspect"; + packageName = "unist-util-inspect"; + version = "7.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/unist-util-inspect/-/unist-util-inspect-7.0.0.tgz"; + sha512 = "2Utgv78I7PUu461Y9cdo+IUiiKSKpDV5CE/XD6vTj849a3xlpDAScvSJ6cQmtFBGgAmCn2wR7jLuXhpg1XLlJw=="; + }; + }; "unist-util-is-2.1.3" = { name = "unist-util-is"; packageName = "unist-util-is"; @@ -63242,6 +65483,15 @@ let sha512 = "w+PkwCbYSFw8vpgWD0v7zRCl1FpY3fjDSQ3/N/wNd9Ffa4gPi8+4keqt99N3XW6F99t/mUzp2xAhNmfKWp95QA=="; }; }; + "unist-util-position-4.0.1" = { + name = "unist-util-position"; + packageName = "unist-util-position"; + version = "4.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/unist-util-position/-/unist-util-position-4.0.1.tgz"; + sha512 = "mgy/zI9fQ2HlbOtTdr2w9lhVaiFUHWQnZrFF2EUoVOqtAUdzqMtNiD99qA5a1IcjWVR8O6aVYE9u7Z2z1v0SQA=="; + }; + }; "unist-util-position-from-estree-1.1.1" = { name = "unist-util-position-from-estree"; packageName = "unist-util-position-from-estree"; @@ -63314,6 +65564,15 @@ let sha512 = "SdfAl8fsDclywZpfMDTVDxA2V7LjtRDTOFd44wUJamgl6OlVngsqWjxvermMYf60elWHbxhuRCZml7AnuXCaSA=="; }; }; + "unist-util-to-list-of-char-0.1.3" = { + name = "unist-util-to-list-of-char"; + packageName = "unist-util-to-list-of-char"; + version = "0.1.3"; + src = fetchurl { + url = "https://registry.npmjs.org/unist-util-to-list-of-char/-/unist-util-to-list-of-char-0.1.3.tgz"; + sha512 = "f8GrLHdhBKfaW6mzJc25BKeUOqhsuiRXlGrXBtb3pmRT3QCuYS+jH4g7Uf52hjV7TLQN4PGnjzrTFMFXAQaprA=="; + }; + }; "unist-util-visit-1.4.1" = { name = "unist-util-visit"; packageName = "unist-util-visit"; @@ -63332,6 +65591,15 @@ let sha512 = "iJ4/RczbJMkD0712mGktuGpm/U4By4FfDonL7N/9tATGIF4imikjOuagyMY53tnZq3NP6BcmlrHhEKAfGWjh7Q=="; }; }; + "unist-util-visit-3.1.0" = { + name = "unist-util-visit"; + packageName = "unist-util-visit"; + version = "3.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/unist-util-visit/-/unist-util-visit-3.1.0.tgz"; + sha512 = "Szoh+R/Ll68QWAyQyZZpQzZQm2UPbxibDvaY8Xc9SUtYgPsDzx5AWSk++UUt2hJuow8mvwR+rG+LQLw+KsuAKA=="; + }; + }; "unist-util-visit-4.1.0" = { name = "unist-util-visit"; packageName = "unist-util-visit"; @@ -63368,6 +65636,15 @@ let sha512 = "1KROIZWo6bcMrZEwiH2UrXDyalAa0uqzWCxCJj6lPOvTve2WkfgCytoDTPaMnodXh1WrXOq0haVYHj99ynJlsg=="; }; }; + "unist-util-visit-parents-4.1.1" = { + name = "unist-util-visit-parents"; + packageName = "unist-util-visit-parents"; + version = "4.1.1"; + src = fetchurl { + url = "https://registry.npmjs.org/unist-util-visit-parents/-/unist-util-visit-parents-4.1.1.tgz"; + sha512 = "1xAFJXAKpnnJl8G7K5KgU7FY55y3GcLIXqkzUj5QF/QVP7biUm0K0O2oqVkYsdjzJKifYeWn9+o6piAK2hGSHw=="; + }; + }; "unist-util-visit-parents-5.1.0" = { name = "unist-util-visit-parents"; packageName = "unist-util-visit-parents"; @@ -63926,13 +66203,13 @@ let sha1 = "23f89069a6c62f46cf3a1d3b00169cefb90be0c6"; }; }; - "usb-1.8.0" = { + "usb-1.9.0" = { name = "usb"; packageName = "usb"; - version = "1.8.0"; + version = "1.9.0"; src = fetchurl { - url = "https://registry.npmjs.org/usb/-/usb-1.8.0.tgz"; - sha512 = "lA0q2tjDEAq1YUsW6nQ+asw92TtFrQ8rhMd11jAoFhK3xItZUupJ7npZDSmVOpQqQhhdFmX/YciqyywupA/wOQ=="; + url = "https://registry.npmjs.org/usb/-/usb-1.9.0.tgz"; + sha512 = "nybH1SzvwYkRQ5s8ko9XXyZkrcWV5VWMMv7yh5H++wALhjBFjt2XBoSJWxBUdu6U/UfceQz42inhv3/maxM8jg=="; }; }; "use-3.1.1" = { @@ -64395,6 +66672,15 @@ let sha1 = "1c14479b40f1397a75782f115e4086447433a200"; }; }; + "validate-glob-opts-1.0.2" = { + name = "validate-glob-opts"; + packageName = "validate-glob-opts"; + version = "1.0.2"; + src = fetchurl { + url = "https://registry.npmjs.org/validate-glob-opts/-/validate-glob-opts-1.0.2.tgz"; + sha512 = "3PKjRQq/R514lUcG9OEiW0u9f7D4fP09A07kmk1JbNn2tfeQdAHhlT+A4dqERXKu2br2rrxSM3FzagaEeq9w+A=="; + }; + }; "validate-npm-package-license-3.0.4" = { name = "validate-npm-package-license"; packageName = "validate-npm-package-license"; @@ -64575,13 +66861,13 @@ let sha1 = "dfe93616ad0e7ae801b332a9d88bfc5cdc8e1d1f"; }; }; - "vasync-2.2.0" = { + "vasync-2.2.1" = { name = "vasync"; packageName = "vasync"; - version = "2.2.0"; + version = "2.2.1"; src = fetchurl { - url = "https://registry.npmjs.org/vasync/-/vasync-2.2.0.tgz"; - sha1 = "cfde751860a15822db3b132bc59b116a4adaf01b"; + url = "https://registry.npmjs.org/vasync/-/vasync-2.2.1.tgz"; + sha512 = "Hq72JaTpcTFdWiNA4Y22Amej2GH3BFmBaKPPlDZ4/oC8HNn2ISHLkFrJU4Ds8R3jcUi7oo5Y9jcMHKjES+N9wQ=="; }; }; "vega-5.21.0" = { @@ -64890,13 +67176,13 @@ let sha512 = "/juG65kTL4Cy2su4P8HjtkTxk6VmJDiOPBufWniqQ6wknac6jNiXS9vU+hO3wgusiyqWlzTbVHi0dyJqRONg3w=="; }; }; - "verda-1.4.1" = { + "verda-1.4.2" = { name = "verda"; packageName = "verda"; - version = "1.4.1"; + version = "1.4.2"; src = fetchurl { - url = "https://registry.npmjs.org/verda/-/verda-1.4.1.tgz"; - sha512 = "mhvGm8JE+IWLhHBDnlvW14hUtkdyZ+D7YZLsn3BGMLguhfpajjCqWezHPZEH8Dxmwvy/gmLbTddzTGXZs5gwrg=="; + url = "https://registry.npmjs.org/verda/-/verda-1.4.2.tgz"; + sha512 = "wyFXcOfspMxP/GB/+2nMrQNv0ojpYo3b5m48Yo+E3kGUWD2k1uw5Tr9HrXgPV/nWH0eT8Lgodn5Gx6eV6b/9iQ=="; }; }; "verror-1.1.0" = { @@ -64989,6 +67275,15 @@ let sha512 = "O6AE4OskCG5S1emQ/4gl8zK586RqA3srz3nfK/Viy0UPToBc5Trp9BVFb1u0CjsKrAWwnpr4ifM/KBXPWwJbCA=="; }; }; + "vfile-5.2.0" = { + name = "vfile"; + packageName = "vfile"; + version = "5.2.0"; + src = fetchurl { + url = "https://registry.npmjs.org/vfile/-/vfile-5.2.0.tgz"; + sha512 = "ftCpb6pU8Jrzcqku8zE6N3Gi4/RkDhRwEXSWudzZzA2eEOn/cBpsfk9aulCUR+j1raRSAykYQap9u6j6rhUaCA=="; + }; + }; "vfile-find-down-1.0.0" = { name = "vfile-find-down"; packageName = "vfile-find-down"; @@ -65016,6 +67311,15 @@ let sha512 = "YWx8fhWQNYpHxFkR5fDO4lCdvPcY4jfCG7qUMHVvSp14vRfkEYxFG/vUEV0eJuXoKFfiAmMkAS8dekOYnpAJ+A=="; }; }; + "vfile-find-up-6.0.0" = { + name = "vfile-find-up"; + packageName = "vfile-find-up"; + version = "6.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/vfile-find-up/-/vfile-find-up-6.0.0.tgz"; + sha512 = "TPE1tYyHrYxewHxi42F8yP45rY5fK78jiPg9WP1xH5TfAbdncxja5NquZyYSSzG1aHpK98AvUOVJrEOoTonW6w=="; + }; + }; "vfile-location-2.0.6" = { name = "vfile-location"; packageName = "vfile-location"; @@ -65034,6 +67338,15 @@ let sha512 = "aLEIZKv/oxuCDZ8lkJGhuhztf/BW4M+iHdCwglA/eWc+vtuRFJj8EtgceYFX4LRjOhCAAiNHsKGssC6onJ+jbA=="; }; }; + "vfile-location-4.0.1" = { + name = "vfile-location"; + packageName = "vfile-location"; + version = "4.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/vfile-location/-/vfile-location-4.0.1.tgz"; + sha512 = "JDxPlTbZrZCQXogGheBHjbRWjESSPEak770XwWPfw5mTc1v1nWGLB/apzZxsx8a0SJVfF8HK8ql8RD308vXRUw=="; + }; + }; "vfile-message-1.1.1" = { name = "vfile-message"; packageName = "vfile-message"; @@ -65088,6 +67401,24 @@ let sha512 = "GN2bH2gs4eLnw/4jPSgfBjo+XCuvnX9elHICJZjVD4+NM0nsUrMTvdjGY5Sc/XG69XVTgLwj7hknQVc6M9FukA=="; }; }; + "vfile-reporter-7.0.2" = { + name = "vfile-reporter"; + packageName = "vfile-reporter"; + version = "7.0.2"; + src = fetchurl { + url = "https://registry.npmjs.org/vfile-reporter/-/vfile-reporter-7.0.2.tgz"; + sha512 = "1bYxpyhl8vhAICiKR59vYyZHIOWsF7P1nV6xjaz3ZWAyOQDQhR4DjlOZo14+PiV9oLEWIrolvGHs0/2Bnaw5Vw=="; + }; + }; + "vfile-reporter-pretty-5.0.0" = { + name = "vfile-reporter-pretty"; + packageName = "vfile-reporter-pretty"; + version = "5.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/vfile-reporter-pretty/-/vfile-reporter-pretty-5.0.0.tgz"; + sha512 = "pynx5Xvqp6TArfaP6T1JcyZK45Z7iQH6mv4XV7ce0Kry9t15zWaoZqFQvs9PNvivgxm7PFKzZV/l88VswW8Upw=="; + }; + }; "vfile-sort-1.0.0" = { name = "vfile-sort"; packageName = "vfile-sort"; @@ -65106,6 +67437,15 @@ let sha512 = "tAyUqD2R1l/7Rn7ixdGkhXLD3zsg+XLAeUDUhXearjfIcpL1Hcsj5hHpCoy/gvfK/Ws61+e972fm0F7up7hfYA=="; }; }; + "vfile-sort-3.0.0" = { + name = "vfile-sort"; + packageName = "vfile-sort"; + version = "3.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/vfile-sort/-/vfile-sort-3.0.0.tgz"; + sha512 = "fJNctnuMi3l4ikTVcKpxTbzHeCgvDhnI44amA3NVDvA6rTC6oKCFpCVyT5n2fFMr3ebfr+WVQZedOCd73rzSxg=="; + }; + }; "vfile-statistics-1.1.4" = { name = "vfile-statistics"; packageName = "vfile-statistics"; @@ -65115,6 +67455,24 @@ let sha512 = "lXhElVO0Rq3frgPvFBwahmed3X03vjPF8OcjKMy8+F1xU/3Q3QU3tKEDp743SFtb74PdF0UWpxPvtOP0GCLheA=="; }; }; + "vfile-statistics-2.0.0" = { + name = "vfile-statistics"; + packageName = "vfile-statistics"; + version = "2.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/vfile-statistics/-/vfile-statistics-2.0.0.tgz"; + sha512 = "foOWtcnJhKN9M2+20AOTlWi2dxNfAoeNIoxD5GXcO182UJyId4QrXa41fWrgcfV3FWTjdEDy3I4cpLVcQscIMA=="; + }; + }; + "vfile-to-eslint-2.0.2" = { + name = "vfile-to-eslint"; + packageName = "vfile-to-eslint"; + version = "2.0.2"; + src = fetchurl { + url = "https://registry.npmjs.org/vfile-to-eslint/-/vfile-to-eslint-2.0.2.tgz"; + sha512 = "QvKxY1zCwLiDoM+Y4J46AHTRrY6WgVg9u8Ae/KbLRUmphcscmtIgSnttKefWH0X93JkONO+UD1DrltCpYYmDAQ=="; + }; + }; "videostream-3.2.2" = { name = "videostream"; packageName = "videostream"; @@ -65412,6 +67770,15 @@ let sha512 = "QW2SFk4kln5lTPQajGNuXWtmr2z9hVA6Sfi4qPFEW2vjt2XaUAp38/1OrcUQYiJXOyXntbWN2jZJaGxg+hDUxw=="; }; }; + "vscode-json-languageservice-4.1.10" = { + name = "vscode-json-languageservice"; + packageName = "vscode-json-languageservice"; + version = "4.1.10"; + src = fetchurl { + url = "https://registry.npmjs.org/vscode-json-languageservice/-/vscode-json-languageservice-4.1.10.tgz"; + sha512 = "IHliMEEYSY0tJjJt0ECb8ESx/nRXpoy9kN42WVQXgaqGyizFAf3jibSiezDQTrrY7f3kywXggCU+kkJEM+OLZQ=="; + }; + }; "vscode-json-languageservice-4.1.9" = { name = "vscode-json-languageservice"; packageName = "vscode-json-languageservice"; @@ -66177,6 +68544,15 @@ let sha512 = "wYxSGajtmoP4WxfejAPIr4l0fVh+jeMXZb08wNc0tMg6xsfZXj3cECqIK0G7ZAqUq0PP8WlMDtaOGVBTAWztNw=="; }; }; + "web-namespaces-2.0.1" = { + name = "web-namespaces"; + packageName = "web-namespaces"; + version = "2.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/web-namespaces/-/web-namespaces-2.0.1.tgz"; + sha512 = "bKr1DkiNa2krS7qxNtdrtHAmzuYGFQLiQ13TsorsdT6ULTkPLKuu5+GsFpDlg6JFjUTwX2DyhMPG2be8uPrqsQ=="; + }; + }; "web-push-3.4.4" = { name = "web-push"; packageName = "web-push"; @@ -66186,13 +68562,13 @@ let sha512 = "tB0F+ccobsfw5jTWBinWJKyd/YdCdRbKj+CFSnsJeEgFYysOULvWFYyeCxn9KuQvG/3UF1t3cTAcJzBec5LCWA=="; }; }; - "web-streams-polyfill-3.1.1" = { + "web-streams-polyfill-3.2.0" = { name = "web-streams-polyfill"; packageName = "web-streams-polyfill"; - version = "3.1.1"; + version = "3.2.0"; src = fetchurl { - url = "https://registry.npmjs.org/web-streams-polyfill/-/web-streams-polyfill-3.1.1.tgz"; - sha512 = "Czi3fG883e96T4DLEPRvufrF2ydhOOW1+1a6c3gNjH2aIh50DNFBdfwh2AKoOf1rXvpvavAoA11Qdq9+BKjE0Q=="; + url = "https://registry.npmjs.org/web-streams-polyfill/-/web-streams-polyfill-3.2.0.tgz"; + sha512 = "EqPmREeOzttaLRm5HS7io98goBgZ7IVz79aDvqjD0kYXLtFZTc0T/U6wHTPKyIjb+MdN7DFIIX6hgdBEpWmfPA=="; }; }; "web-tree-sitter-0.17.1" = { @@ -66330,13 +68706,13 @@ let sha512 = "3S6e9Vo1W2ijk4F4PPWRIu6D/uGgqaPmqw+av3W3jLDujuNkdxX5h5c+RQ6GkjVR+WwIPOfgY8av+j5j4tMqJw=="; }; }; - "webpack-5.61.0" = { + "webpack-5.64.0" = { name = "webpack"; packageName = "webpack"; - version = "5.61.0"; + version = "5.64.0"; src = fetchurl { - url = "https://registry.npmjs.org/webpack/-/webpack-5.61.0.tgz"; - sha512 = "fPdTuaYZ/GMGFm4WrPi2KRCqS1vDp773kj9S0iI5Uc//5cszsFEDgHNaX4Rj1vobUiU1dFIV3mA9k1eHeluFpw=="; + url = "https://registry.npmjs.org/webpack/-/webpack-5.64.0.tgz"; + sha512 = "UclnN24m054HaPC45nmDEosX6yXWD+UGC12YtUs5i356DleAUGMDC9LBAw37xRRfgPKYIdCYjGA7RZ1AA+ZnGg=="; }; }; "webpack-bundle-analyzer-3.9.0" = { @@ -66402,13 +68778,13 @@ let sha512 = "PUxZ+oSTxogFQgkTtFndEtJIPNmml7ExwufBZ9L2/Xyyd5PnOL5UreWe5ZT7IU25DSdykL9p1MLQzmLh2ljSeg=="; }; }; - "webpack-dev-server-3.11.2" = { + "webpack-dev-server-3.11.3" = { name = "webpack-dev-server"; packageName = "webpack-dev-server"; - version = "3.11.2"; + version = "3.11.3"; src = fetchurl { - url = "https://registry.npmjs.org/webpack-dev-server/-/webpack-dev-server-3.11.2.tgz"; - sha512 = "A80BkuHRQfCiNtGBS1EMf2ChTUs0x+B3wGDFmOeT4rmJOHhHTCH2naNxIHhmkr0/UillP4U3yeIyv1pNp+QDLQ=="; + url = "https://registry.npmjs.org/webpack-dev-server/-/webpack-dev-server-3.11.3.tgz"; + sha512 = "3x31rjbEQWKMNzacUZRE6wXvUFuGpH7vr0lIEbYpMAG9BOxi0928QU1BBswOAP3kg3H1O4hiS+sq4YyAn6ANnA=="; }; }; "webpack-flush-chunks-2.0.3" = { @@ -67167,6 +69543,15 @@ let sha1 = "288a04d87eda5c286e060dfe8f135ce8d007f8ba"; }; }; + "wrap-ansi-4.0.0" = { + name = "wrap-ansi"; + packageName = "wrap-ansi"; + version = "4.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/wrap-ansi/-/wrap-ansi-4.0.0.tgz"; + sha512 = "uMTsj9rDb0/7kk1PbcbCcwvHUxp60fGDB/NNXpVa0Q+ic/e7y5+BwTxKfQ33VYgDppSwi/FBzpetYzo8s6tfbg=="; + }; + }; "wrap-ansi-5.1.0" = { name = "wrap-ansi"; packageName = "wrap-ansi"; @@ -67365,6 +69750,15 @@ let sha512 = "zmhltoSR8u1cnDsD43TX59mzoMZsLKqUweyYBAIvTngR3shc0W6aOZylZmq/7hqyVxPdi+5Ud2QInblgyE72fw=="; }; }; + "ws-7.4.2" = { + name = "ws"; + packageName = "ws"; + version = "7.4.2"; + src = fetchurl { + url = "https://registry.npmjs.org/ws/-/ws-7.4.2.tgz"; + sha512 = "T4tewALS3+qsrpGI/8dqNMLIVdq/g/85U98HPMa6F0m6xTbvhXU6RCQLqPH3+SlomNV/LdY6RXEbBpMH6EOJnA=="; + }; + }; "ws-7.4.5" = { name = "ws"; packageName = "ws"; @@ -67464,6 +69858,15 @@ let sha1 = "c9af18876f7a175801d564fe70ad9e8317784934"; }; }; + "xcase-2.0.1" = { + name = "xcase"; + packageName = "xcase"; + version = "2.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/xcase/-/xcase-2.0.1.tgz"; + sha1 = "c7fa72caa0f440db78fd5673432038ac984450b9"; + }; + }; "xcode-3.0.1" = { name = "xcode"; packageName = "xcode"; @@ -67509,13 +69912,13 @@ let sha512 = "N1XQngeqMBoj9wM4ZFadVV2MymImeiFfYD+fJrNlcVcOHsJFFQe7n3b+aBoTPwARuq2HQxukfzVpQmAk1gN4sQ=="; }; }; - "xdl-59.2.11" = { + "xdl-59.2.13" = { name = "xdl"; packageName = "xdl"; - version = "59.2.11"; + version = "59.2.13"; src = fetchurl { - url = "https://registry.npmjs.org/xdl/-/xdl-59.2.11.tgz"; - sha512 = "vQxaqOiKzSFqwcfA6A8q56967IfjMAS3pIBLlZENWMqi3mEjZg95ZQo6WVkqQhKYoky2bMmhGaSHEYjxltRsjQ=="; + url = "https://registry.npmjs.org/xdl/-/xdl-59.2.13.tgz"; + sha512 = "GDfdIAKWP4ZcjNOne6bzCcCm+BVPJB2L3KuQj6PizXo5Tx9cmvROVzEd/YNQcn8hTSliCmZ1RXexSIx3xfJ5Sg=="; }; }; "xenvar-0.5.1" = { @@ -68455,13 +70858,13 @@ let sha512 = "9Ni+uXWeFix9+1t7s1q40zZdbcpdi/OwgD4N4cVaqI+bppPciOOXQ/RSggannwZu8m8zrSWELn6/93G7308jgg=="; }; }; - "yeoman-environment-3.6.0" = { + "yeoman-environment-3.8.0" = { name = "yeoman-environment"; packageName = "yeoman-environment"; - version = "3.6.0"; + version = "3.8.0"; src = fetchurl { - url = "https://registry.npmjs.org/yeoman-environment/-/yeoman-environment-3.6.0.tgz"; - sha512 = "X16N9lhzRdUKFT8MZrpwjLDKsdgAUqh4VPR2wAXeAqjJJaUxYBxCQGFxtZVTf3vbyNuIHXPunwOLtK60bpapbg=="; + url = "https://registry.npmjs.org/yeoman-environment/-/yeoman-environment-3.8.0.tgz"; + sha512 = "BPo3btCxefe8NzDMk59QRDNBXMC4Ra6SHhFfEsV2DTmAp/6ZoovMANlJiWrXu41rtFQBmjH/rT2tSiHGowt38w=="; }; }; "yeoman-generator-5.4.2" = { @@ -68554,13 +70957,13 @@ let sha512 = "Yj3yXweRc8LdRMrCC8nIc4kkjWecPAUVh0TI0OUrWXx6aX790vLcDlWca6I4vsyCGH3LpWxq0dJRcMOFoVqmeg=="; }; }; - "zen-observable-ts-1.1.0" = { + "zen-observable-ts-1.2.2" = { name = "zen-observable-ts"; packageName = "zen-observable-ts"; - version = "1.1.0"; + version = "1.2.2"; src = fetchurl { - url = "https://registry.npmjs.org/zen-observable-ts/-/zen-observable-ts-1.1.0.tgz"; - sha512 = "1h4zlLSqI2cRLPJUHJFL8bCWHhkpuXkF+dbGkRaWjgDIG26DmzyshUMrdV/rL3UnR+mhaX4fRq8LPouq0MYYIA=="; + url = "https://registry.npmjs.org/zen-observable-ts/-/zen-observable-ts-1.2.2.tgz"; + sha512 = "o15G3luGAPoWD2//djCQsnC7886KpgQETAvTwnDPMN33RS+XACoFR46fm5e3tC/WNTF0uzHPL91Yyakc280Xiw=="; }; }; "zeromq-5.2.8" = { @@ -68659,15 +71062,15 @@ in "@angular/cli" = nodeEnv.buildNodePackage { name = "_at_angular_slash_cli"; packageName = "@angular/cli"; - version = "12.2.12"; + version = "13.0.2"; src = fetchurl { - url = "https://registry.npmjs.org/@angular/cli/-/cli-12.2.12.tgz"; - sha512 = "69M5lrXuHKBkPne8h1v1Mgl9aJZhc+jamU7iZjQhlIt8xL1pTGr/y9/4S+sX1gKEGhd6p/82KwJ1CFcm/Kjhfg=="; + url = "https://registry.npmjs.org/@angular/cli/-/cli-13.0.2.tgz"; + sha512 = "eFEVZR56q1zCCBfp7e7sqmrqbHhdDd/1QGv9FYD+2HoC1VHYQf5w+NyWofQhx7a+tnGGqoR28LYzSsL7fFW8pw=="; }; dependencies = [ - sources."@angular-devkit/architect-0.1202.12" - sources."@angular-devkit/core-12.2.12" - sources."@angular-devkit/schematics-12.2.12" + sources."@angular-devkit/architect-0.1300.2" + sources."@angular-devkit/core-13.0.2" + sources."@angular-devkit/schematics-13.0.2" sources."@gar/promisify-1.1.2" sources."@npmcli/fs-1.0.0" sources."@npmcli/git-2.1.0" @@ -68675,16 +71078,16 @@ in sources."@npmcli/move-file-1.1.2" sources."@npmcli/node-gyp-1.0.3" sources."@npmcli/promise-spawn-1.3.2" - sources."@npmcli/run-script-1.8.6" - sources."@schematics/angular-12.2.12" + sources."@npmcli/run-script-2.0.0" + sources."@schematics/angular-13.0.2" sources."@tootallnate/once-1.1.2" sources."@yarnpkg/lockfile-1.1.0" sources."abbrev-1.1.1" sources."agent-base-6.0.2" sources."agentkeepalive-4.1.4" sources."aggregate-error-3.1.0" - sources."ajv-8.6.2" - sources."ajv-formats-2.1.0" + sources."ajv-8.6.3" + sources."ajv-formats-2.1.1" sources."ansi-colors-4.1.1" sources."ansi-escapes-4.3.2" sources."ansi-regex-5.0.1" @@ -68697,20 +71100,13 @@ in sources."string_decoder-1.1.1" ]; }) - sources."asn1-0.2.4" - sources."assert-plus-1.0.0" - sources."asynckit-0.4.0" - sources."aws-sign2-0.7.0" - sources."aws4-1.11.0" sources."balanced-match-1.0.2" sources."base64-js-1.5.1" - sources."bcrypt-pbkdf-1.0.2" sources."bl-4.1.0" sources."brace-expansion-1.1.11" sources."buffer-5.7.1" sources."builtins-1.0.3" sources."cacache-15.3.0" - sources."caseless-0.12.0" sources."chalk-4.1.2" sources."chardet-0.7.0" sources."chownr-2.0.0" @@ -68722,18 +71118,14 @@ in sources."code-point-at-1.1.0" sources."color-convert-2.0.1" sources."color-name-1.1.4" - sources."combined-stream-1.0.8" sources."concat-map-0.0.1" sources."console-control-strings-1.1.0" sources."core-util-is-1.0.3" - sources."dashdash-1.14.1" sources."debug-4.3.2" sources."defaults-1.0.3" sources."define-lazy-prop-2.0.0" - sources."delayed-stream-1.0.0" sources."delegates-1.0.0" sources."depd-1.1.2" - sources."ecc-jsbn-0.1.2" sources."emoji-regex-8.0.0" (sources."encoding-0.1.13" // { dependencies = [ @@ -68743,14 +71135,10 @@ in sources."env-paths-2.2.1" sources."err-code-2.0.3" sources."escape-string-regexp-1.0.5" - sources."extend-3.0.2" sources."external-editor-3.1.0" - sources."extsprintf-1.3.0" sources."fast-deep-equal-3.1.3" sources."fast-json-stable-stringify-2.1.0" sources."figures-3.2.0" - sources."forever-agent-0.6.1" - sources."form-data-2.3.3" sources."fs-minipass-2.1.0" sources."fs.realpath-1.0.0" sources."function-bind-1.1.1" @@ -68762,35 +71150,26 @@ in sources."strip-ansi-3.0.1" ]; }) - sources."getpass-0.1.7" sources."glob-7.2.0" sources."graceful-fs-4.2.8" - sources."har-schema-2.0.0" - (sources."har-validator-5.1.5" // { - dependencies = [ - sources."ajv-6.12.6" - sources."json-schema-traverse-0.4.1" - ]; - }) sources."has-1.0.3" sources."has-flag-4.0.0" sources."has-unicode-2.0.1" sources."hosted-git-info-4.0.2" sources."http-cache-semantics-4.1.0" sources."http-proxy-agent-4.0.1" - sources."http-signature-1.2.0" sources."https-proxy-agent-5.0.0" sources."humanize-ms-1.2.1" sources."iconv-lite-0.4.24" sources."ieee754-1.2.1" - sources."ignore-walk-3.0.4" + sources."ignore-walk-4.0.1" sources."imurmurhash-0.1.4" sources."indent-string-4.0.0" sources."infer-owner-1.0.4" sources."inflight-1.0.6" sources."inherits-2.0.4" sources."ini-2.0.0" - (sources."inquirer-8.1.2" // { + (sources."inquirer-8.2.0" // { dependencies = [ sources."rxjs-7.4.0" sources."tslib-2.1.0" @@ -68802,27 +71181,19 @@ in sources."is-fullwidth-code-point-3.0.0" sources."is-interactive-1.0.0" sources."is-lambda-1.0.1" - sources."is-typedarray-1.0.0" sources."is-unicode-supported-0.1.0" sources."is-wsl-2.2.0" sources."isarray-1.0.0" sources."isexe-2.0.0" - sources."isstream-0.1.2" - sources."jsbn-0.1.1" sources."json-parse-even-better-errors-2.3.1" - sources."json-schema-0.2.3" sources."json-schema-traverse-1.0.0" - sources."json-stringify-safe-5.0.1" sources."jsonc-parser-3.0.0" sources."jsonparse-1.3.1" - sources."jsprim-1.4.1" sources."lodash-4.17.21" sources."log-symbols-4.1.0" sources."lru-cache-6.0.0" sources."magic-string-0.25.7" sources."make-fetch-happen-9.1.0" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" sources."mimic-fn-2.1.0" sources."minimatch-3.0.4" sources."minipass-3.1.5" @@ -68837,42 +71208,33 @@ in sources."ms-2.1.2" sources."mute-stream-0.0.8" sources."negotiator-0.6.2" - sources."node-gyp-7.1.2" + sources."node-gyp-8.4.0" sources."nopt-5.0.0" sources."npm-bundled-1.1.2" sources."npm-install-checks-4.0.0" sources."npm-normalize-package-bin-1.0.1" sources."npm-package-arg-8.1.5" - sources."npm-packlist-2.2.2" + sources."npm-packlist-3.0.0" sources."npm-pick-manifest-6.1.1" sources."npm-registry-fetch-11.0.0" sources."npmlog-4.1.2" sources."number-is-nan-1.0.1" - sources."oauth-sign-0.9.0" sources."object-assign-4.1.1" sources."once-1.4.0" sources."onetime-5.1.2" - sources."open-8.2.1" + sources."open-8.4.0" sources."ora-5.4.1" sources."os-tmpdir-1.0.2" sources."p-map-4.0.0" - sources."pacote-11.3.5" + sources."pacote-12.0.2" sources."path-is-absolute-1.0.1" sources."path-parse-1.0.7" - sources."performance-now-2.1.0" sources."process-nextick-args-2.0.1" sources."promise-inflight-1.0.1" sources."promise-retry-2.0.1" - sources."psl-1.8.0" sources."punycode-2.1.1" - sources."qs-6.5.2" sources."read-package-json-fast-2.0.3" sources."readable-stream-3.6.0" - (sources."request-2.88.2" // { - dependencies = [ - sources."uuid-3.4.0" - ]; - }) sources."require-from-string-2.0.2" sources."resolve-1.20.0" sources."restore-cursor-3.1.0" @@ -68890,7 +71252,6 @@ in sources."socks-proxy-agent-6.1.0" sources."source-map-0.7.3" sources."sourcemap-codec-1.4.8" - sources."sshpk-1.16.1" sources."ssri-8.0.1" sources."string-width-4.2.3" sources."string_decoder-1.3.0" @@ -68900,10 +71261,7 @@ in sources."tar-6.1.11" sources."through-2.3.8" sources."tmp-0.0.33" - sources."tough-cookie-2.5.0" sources."tslib-1.14.1" - sources."tunnel-agent-0.6.0" - sources."tweetnacl-0.14.5" sources."type-fest-0.21.3" sources."unique-filename-1.1.1" sources."unique-slug-2.0.2" @@ -68911,11 +71269,6 @@ in sources."util-deprecate-1.0.2" sources."uuid-8.3.2" sources."validate-npm-package-name-3.0.0" - (sources."verror-1.10.0" // { - dependencies = [ - sources."core-util-is-1.0.2" - ]; - }) sources."wcwidth-1.0.1" sources."which-2.0.2" sources."wide-align-1.1.5" @@ -69123,7 +71476,7 @@ in sources."has-symbols-1.0.2" sources."http-cache-semantics-4.1.0" sources."ieee754-1.2.1" - sources."ignore-5.1.8" + sources."ignore-5.1.9" sources."inflight-1.0.6" sources."inherits-2.0.4" sources."is-absolute-1.0.0" @@ -69158,8 +71511,8 @@ in sources."map-obj-4.3.0" sources."marky-1.2.2" sources."matcher-2.1.0" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."mimic-response-2.1.0" sources."minimatch-3.0.4" sources."minimatch-all-1.1.0" @@ -69367,8 +71720,8 @@ in sources."lodash-4.17.21" sources."lowdb-1.0.0" sources."lunr-2.3.9" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."mimic-fn-2.1.0" sources."ms-2.1.2" sources."mute-stream-0.0.8" @@ -69691,7 +72044,7 @@ in sources."@hyperswarm/hypersign-2.1.1" sources."@hyperswarm/network-2.1.0" sources."@leichtgewicht/ip-codec-2.0.3" - sources."@types/node-16.11.6" + sources."@types/node-16.11.7" sources."abstract-extension-3.1.1" sources."abstract-leveldown-6.2.3" sources."ansi-colors-3.2.3" @@ -69708,7 +72061,7 @@ in sources."array-lru-1.1.1" sources."atomic-batcher-1.0.2" sources."await-lock-2.1.0" - sources."b4a-1.1.0" + sources."b4a-1.1.2" sources."balanced-match-1.0.2" sources."base64-js-1.5.1" sources."binary-extensions-2.2.0" @@ -69850,7 +72203,7 @@ in ]; }) sources."hypercore-cache-1.0.2" - (sources."hypercore-crypto-2.3.0" // { + (sources."hypercore-crypto-2.3.2" // { dependencies = [ sources."uint64be-3.0.0" ]; @@ -70016,8 +72369,8 @@ in }) sources."queue-tick-1.0.0" sources."random-access-file-2.2.0" - sources."random-access-memory-3.1.2" - sources."random-access-storage-1.4.1" + sources."random-access-memory-3.1.3" + sources."random-access-storage-1.4.2" sources."random-words-1.1.1" sources."randombytes-2.1.0" sources."range-parser-1.2.1" @@ -70066,7 +72419,7 @@ in ]; }) sources."siphash24-universal-1.0.0" - (sources."sodium-javascript-0.7.3" // { + (sources."sodium-javascript-0.7.4" // { dependencies = [ sources."nanoassert-2.0.0" ]; @@ -70194,7 +72547,7 @@ in sha512 = "7EpRhhrJqICbMGjLkdthQYLLGMXNCsrsq8/xxYX1cdRiNwoGb84yjL1WFBrnQtaM8rXShOvhf4lrM2W0K9m4lQ=="; }; dependencies = [ - sources."@babel/parser-7.16.2" + sources."@babel/parser-7.16.3" sources."@medable/mdctl-api-1.0.62" sources."@medable/mdctl-core-1.0.62" sources."@medable/mdctl-core-schemas-1.0.62" @@ -70224,7 +72577,7 @@ in sources."@nodelib/fs.walk-1.2.8" sources."@types/glob-7.2.0" sources."@types/minimatch-3.0.5" - sources."@types/node-16.11.6" + sources."@types/node-16.11.7" sources."@types/tough-cookie-2.3.8" sources."abbrev-1.1.1" sources."abort-controller-3.0.0" @@ -70251,7 +72604,7 @@ in sources."array-union-2.1.0" sources."array-uniq-1.0.3" sources."array-unique-0.3.2" - sources."asn1-0.2.4" + sources."asn1-0.2.6" sources."assert-plus-1.0.0" sources."assign-symbols-1.0.0" sources."ast-types-0.9.6" @@ -70527,7 +72880,7 @@ in sources."http-signature-1.2.0" sources."https-proxy-agent-5.0.0" sources."iconv-lite-0.4.24" - sources."ignore-5.1.8" + sources."ignore-5.1.9" sources."ignore-walk-3.0.4" sources."immediate-3.0.6" sources."inflection-1.13.1" @@ -70637,8 +72990,8 @@ in sources."merge2-1.4.1" sources."micromatch-4.0.4" sources."mime-2.6.0" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."mimic-fn-1.2.0" sources."mimic-response-1.0.1" sources."minimatch-3.0.4" @@ -70906,7 +73259,7 @@ in sources."simple-concat-1.0.1" sources."simple-get-2.8.1" sources."slash-3.0.0" - sources."slugify-1.6.1" + sources."slugify-1.6.2" (sources."snapdragon-0.8.2" // { dependencies = [ sources."debug-2.6.9" @@ -71243,7 +73596,7 @@ in sources."@types/estree-0.0.50" sources."@types/json-schema-7.0.9" sources."@types/json5-0.0.29" - sources."@types/node-16.11.6" + sources."@types/node-16.11.7" sources."@types/parse-json-4.0.0" sources."@webassemblyjs/ast-1.11.1" sources."@webassemblyjs/floating-point-hex-parser-1.11.1" @@ -71283,7 +73636,7 @@ in sources."buffer-5.7.1" sources."buffer-from-1.1.2" sources."callsites-3.1.0" - sources."caniuse-lite-1.0.30001274" + sources."caniuse-lite-1.0.30001280" sources."chalk-3.0.0" sources."chardet-0.7.0" sources."chokidar-3.5.2" @@ -71302,7 +73655,7 @@ in sources."cross-spawn-7.0.3" sources."deepmerge-4.2.2" sources."defaults-1.0.3" - sources."electron-to-chromium-1.3.887" + sources."electron-to-chromium-1.3.895" sources."emoji-regex-8.0.0" sources."end-of-stream-1.4.4" (sources."enhanced-resolve-5.8.3" // { @@ -71394,8 +73747,8 @@ in sources."magic-string-0.25.7" sources."memfs-3.3.0" sources."merge-stream-2.0.0" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."mimic-fn-2.1.0" sources."minimatch-3.0.4" sources."minimist-1.2.5" @@ -71415,7 +73768,6 @@ in }) sources."os-name-4.0.1" sources."os-tmpdir-1.0.2" - sources."p-limit-3.1.0" sources."parent-module-1.0.1" sources."parse-json-5.2.0" sources."path-is-absolute-1.0.1" @@ -71472,7 +73824,7 @@ in sources."commander-2.20.3" ]; }) - (sources."terser-webpack-plugin-5.2.4" // { + (sources."terser-webpack-plugin-5.2.5" // { dependencies = [ sources."ajv-6.12.6" sources."json-schema-traverse-0.4.1" @@ -71513,7 +73865,6 @@ in sources."wrappy-1.0.2" sources."yallist-4.0.0" sources."yaml-1.10.2" - sources."yocto-queue-0.1.0" ]; buildInputs = globalBuildInputs; meta = { @@ -71570,7 +73921,7 @@ in sources."util-deprecate-1.0.2" sources."wasm-feature-detect-1.2.11" sources."wcwidth-1.0.1" - sources."web-streams-polyfill-3.1.1" + sources."web-streams-polyfill-3.2.0" ]; buildInputs = globalBuildInputs; meta = { @@ -71623,7 +73974,7 @@ in sources."@babel/generator-7.16.0" sources."@babel/helper-annotate-as-pure-7.16.0" sources."@babel/helper-builder-binary-assignment-operator-visitor-7.16.0" - sources."@babel/helper-compilation-targets-7.16.0" + sources."@babel/helper-compilation-targets-7.16.3" sources."@babel/helper-create-class-features-plugin-7.16.0" sources."@babel/helper-create-regexp-features-plugin-7.16.0" sources."@babel/helper-define-polyfill-provider-0.2.4" @@ -71644,9 +73995,9 @@ in sources."@babel/helper-validator-identifier-7.15.7" sources."@babel/helper-validator-option-7.14.5" sources."@babel/helper-wrap-function-7.16.0" - sources."@babel/helpers-7.16.0" + sources."@babel/helpers-7.16.3" sources."@babel/highlight-7.16.0" - sources."@babel/parser-7.16.2" + sources."@babel/parser-7.16.3" sources."@babel/plugin-bugfix-safari-id-destructuring-collision-in-function-expression-7.16.2" sources."@babel/plugin-bugfix-v8-spread-parameters-in-optional-chaining-7.16.0" sources."@babel/plugin-proposal-async-generator-functions-7.16.0" @@ -71702,7 +74053,7 @@ in sources."@babel/plugin-transform-named-capturing-groups-regex-7.16.0" sources."@babel/plugin-transform-new-target-7.16.0" sources."@babel/plugin-transform-object-super-7.16.0" - sources."@babel/plugin-transform-parameters-7.16.0" + sources."@babel/plugin-transform-parameters-7.16.3" sources."@babel/plugin-transform-property-literals-7.16.0" sources."@babel/plugin-transform-regenerator-7.16.0" sources."@babel/plugin-transform-reserved-words-7.16.0" @@ -71725,9 +74076,9 @@ in sources."semver-5.7.1" ]; }) - sources."@babel/runtime-7.16.0" + sources."@babel/runtime-7.16.3" sources."@babel/template-7.16.0" - sources."@babel/traverse-7.16.0" + sources."@babel/traverse-7.16.3" sources."@babel/types-7.16.0" sources."@hapi/address-2.1.4" sources."@hapi/bourne-1.3.2" @@ -71762,7 +74113,7 @@ in sources."@types/cors-2.8.10" sources."@types/ejs-2.7.0" sources."@types/express-4.17.13" - sources."@types/express-serve-static-core-4.17.24" + sources."@types/express-serve-static-core-4.17.25" sources."@types/fs-capacitor-2.0.0" sources."@types/glob-7.2.0" sources."@types/http-assert-1.5.3" @@ -71781,7 +74132,7 @@ in sources."@types/long-4.0.1" sources."@types/mime-1.3.2" sources."@types/minimatch-3.0.5" - sources."@types/node-16.11.6" + sources."@types/node-16.11.7" sources."@types/normalize-package-data-2.4.1" sources."@types/qs-6.9.7" sources."@types/range-parser-1.2.4" @@ -71817,7 +74168,7 @@ in sources."ansi-styles-3.2.1" sources."apollo-cache-control-0.14.0" sources."apollo-datasource-0.9.0" - sources."apollo-graphql-0.9.4" + sources."apollo-graphql-0.9.5" sources."apollo-link-1.2.14" sources."apollo-reporting-protobuf-0.8.0" (sources."apollo-server-caching-0.7.0" // { @@ -71825,7 +74176,7 @@ in sources."lru-cache-6.0.0" ]; }) - (sources."apollo-server-core-2.25.2" // { + (sources."apollo-server-core-2.25.3" // { dependencies = [ sources."lru-cache-6.0.0" sources."uuid-8.3.2" @@ -71833,7 +74184,7 @@ in }) sources."apollo-server-env-3.1.0" sources."apollo-server-errors-2.5.0" - sources."apollo-server-express-2.25.2" + sources."apollo-server-express-2.25.3" sources."apollo-server-plugin-base-0.13.0" sources."apollo-server-types-0.9.0" sources."apollo-tracing-0.15.0" @@ -71852,7 +74203,7 @@ in sources."array-uniq-1.0.3" sources."array-unique-0.3.2" sources."arrify-2.0.1" - sources."asn1-0.2.4" + sources."asn1-0.2.6" sources."assert-plus-1.0.0" sources."assign-symbols-1.0.0" sources."ast-types-0.13.3" @@ -71919,7 +74270,7 @@ in sources."call-bind-1.0.2" sources."call-me-maybe-1.0.1" sources."camelcase-5.3.1" - sources."caniuse-lite-1.0.30001274" + sources."caniuse-lite-1.0.30001280" sources."caseless-0.12.0" sources."caw-2.0.1" sources."chalk-2.4.2" @@ -72046,7 +74397,7 @@ in sources."ecc-jsbn-0.1.2" sources."ee-first-1.1.1" sources."ejs-2.7.4" - sources."electron-to-chromium-1.3.887" + sources."electron-to-chromium-1.3.895" sources."emoji-regex-8.0.0" sources."encodeurl-1.0.2" sources."end-of-stream-1.4.4" @@ -72129,7 +74480,7 @@ in }) sources."find-up-3.0.0" sources."fkill-6.2.0" - sources."flow-parser-0.163.0" + sources."flow-parser-0.164.0" sources."for-each-0.3.3" sources."for-in-1.0.2" sources."forever-agent-0.6.1" @@ -72182,7 +74533,7 @@ in sources."graphql-14.7.0" sources."graphql-extensions-0.15.0" sources."graphql-subscriptions-1.2.1" - (sources."graphql-tag-2.12.5" // { + (sources."graphql-tag-2.12.6" // { dependencies = [ sources."tslib-2.3.1" ]; @@ -72342,8 +74693,8 @@ in ]; }) sources."mime-1.6.0" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."mimic-fn-1.2.0" sources."mimic-response-1.0.1" sources."minimatch-3.0.4" @@ -72766,7 +75117,7 @@ in sources."fill-range-7.0.1" sources."glob-parent-5.1.2" sources."globby-11.0.4" - sources."ignore-5.1.8" + sources."ignore-5.1.9" sources."is-number-7.0.0" sources."lru-cache-6.0.0" sources."micromatch-4.0.4" @@ -72947,7 +75298,7 @@ in sources."@babel/generator-7.16.0" sources."@babel/helper-validator-identifier-7.15.7" sources."@babel/highlight-7.16.0" - sources."@babel/parser-7.16.2" + sources."@babel/parser-7.16.3" sources."@babel/template-7.16.0" sources."@babel/types-7.16.0" sources."@webassemblyjs/ast-1.11.1" @@ -73014,6 +75365,489 @@ in bypassCache = true; reconstructLock = true; }; + alex = nodeEnv.buildNodePackage { + name = "alex"; + packageName = "alex"; + version = "10.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/alex/-/alex-10.0.0.tgz"; + sha512 = "yTKA5M514WOTpZZkK6pusBbtvVbNTavKS3nI4Z9ceH7RdNGII9S8p8mrcA38S8T0QGxp+EK3l/61XLBj0LTdhQ=="; + }; + dependencies = [ + sources."@babel/code-frame-7.16.0" + sources."@babel/helper-validator-identifier-7.15.7" + sources."@babel/highlight-7.16.0" + sources."@sindresorhus/is-0.14.0" + sources."@szmarczak/http-timer-1.1.2" + sources."@types/acorn-4.0.6" + sources."@types/concat-stream-1.6.1" + sources."@types/debug-4.1.7" + sources."@types/estree-0.0.50" + sources."@types/estree-jsx-0.0.1" + sources."@types/hast-2.3.4" + sources."@types/is-empty-1.2.1" + sources."@types/js-yaml-4.0.4" + sources."@types/mdast-3.0.10" + sources."@types/minimist-1.2.2" + sources."@types/ms-0.7.31" + sources."@types/nlcst-1.0.0" + sources."@types/node-16.11.7" + sources."@types/normalize-package-data-2.4.1" + sources."@types/parse5-6.0.2" + sources."@types/supports-color-8.1.1" + sources."@types/unist-2.0.6" + sources."acorn-8.5.0" + sources."acorn-jsx-5.3.2" + sources."ansi-align-3.0.1" + sources."ansi-regex-5.0.1" + sources."ansi-styles-3.2.1" + sources."argparse-2.0.1" + sources."array-iterate-1.1.4" + sources."arrify-1.0.1" + sources."bail-2.0.2" + sources."balanced-match-1.0.2" + (sources."boxen-5.1.2" // { + dependencies = [ + sources."ansi-styles-4.3.0" + sources."chalk-4.1.2" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + sources."has-flag-4.0.0" + sources."supports-color-7.2.0" + sources."type-fest-0.20.2" + ]; + }) + sources."brace-expansion-1.1.11" + sources."bubble-stream-error-1.0.0" + sources."buffer-from-1.1.2" + sources."builtins-4.0.0" + (sources."cacheable-request-6.1.0" // { + dependencies = [ + sources."get-stream-5.2.0" + sources."lowercase-keys-2.0.0" + sources."pump-3.0.0" + ]; + }) + sources."camelcase-6.2.0" + sources."camelcase-keys-7.0.1" + sources."ccount-2.0.1" + sources."chalk-2.4.2" + sources."character-entities-2.0.1" + sources."character-entities-html4-2.1.0" + sources."character-entities-legacy-3.0.0" + sources."character-reference-invalid-2.0.1" + sources."ci-info-2.0.0" + sources."cli-boxes-2.2.1" + sources."clone-response-1.0.2" + sources."color-convert-1.9.3" + sources."color-name-1.1.3" + sources."comma-separated-tokens-2.0.2" + sources."concat-map-0.0.1" + (sources."concat-stream-2.0.0" // { + dependencies = [ + sources."readable-stream-3.6.0" + sources."string_decoder-1.3.0" + ]; + }) + sources."configstore-5.0.1" + sources."core-util-is-1.0.3" + sources."crypto-random-string-2.0.0" + sources."cuss-2.0.0" + sources."debug-4.3.2" + sources."decamelize-5.0.1" + (sources."decamelize-keys-1.1.0" // { + dependencies = [ + sources."decamelize-1.2.0" + sources."map-obj-1.0.1" + ]; + }) + sources."decompress-response-3.3.0" + sources."deep-extend-0.6.0" + sources."defer-to-connect-1.1.3" + sources."dequal-2.0.2" + sources."diff-5.0.0" + sources."dot-prop-5.3.0" + sources."duplexer-0.1.2" + sources."duplexer3-0.1.4" + sources."emoji-regex-8.0.0" + sources."end-of-stream-1.4.4" + sources."error-ex-1.3.2" + sources."escape-goat-2.1.1" + sources."escape-string-regexp-1.0.5" + sources."estree-util-is-identifier-name-2.0.0" + sources."estree-util-visit-1.1.0" + sources."event-stream-3.1.7" + sources."extend-3.0.2" + sources."fault-2.0.1" + sources."figgy-pudding-3.5.2" + sources."find-up-5.0.0" + sources."format-0.2.2" + sources."from-0.1.7" + sources."fs.realpath-1.0.0" + sources."function-bind-1.1.1" + (sources."get-stream-4.1.0" // { + dependencies = [ + sources."pump-3.0.0" + ]; + }) + sources."git-diff-tree-1.1.0" + sources."git-spawned-stream-1.0.1" + sources."glob-7.2.0" + (sources."global-dirs-3.0.0" // { + dependencies = [ + sources."ini-2.0.0" + ]; + }) + sources."got-9.6.0" + sources."graceful-fs-4.2.8" + sources."hard-rejection-2.1.0" + sources."has-1.0.3" + sources."has-flag-3.0.0" + sources."has-yarn-2.1.0" + sources."hast-util-embedded-2.0.0" + sources."hast-util-from-parse5-7.1.0" + sources."hast-util-has-property-2.0.0" + (sources."hast-util-is-body-ok-link-1.0.4" // { + dependencies = [ + sources."hast-util-has-property-1.0.4" + sources."hast-util-is-element-1.1.0" + ]; + }) + sources."hast-util-is-element-2.1.1" + sources."hast-util-parse-selector-3.1.0" + sources."hast-util-phrasing-2.0.0" + sources."hast-util-to-nlcst-2.2.0" + sources."hast-util-to-string-2.0.0" + sources."hast-util-whitespace-2.0.0" + sources."hastscript-7.0.2" + sources."hosted-git-info-4.0.2" + sources."http-cache-semantics-4.1.0" + sources."ignore-5.1.9" + sources."import-lazy-2.1.0" + sources."import-meta-resolve-1.1.1" + sources."imurmurhash-0.1.4" + sources."indent-string-5.0.0" + sources."inflight-1.0.6" + sources."inherits-2.0.4" + sources."ini-1.3.8" + sources."is-alphabetical-2.0.1" + sources."is-alphanumerical-2.0.1" + sources."is-arrayish-0.2.1" + sources."is-buffer-2.0.5" + sources."is-ci-2.0.0" + sources."is-core-module-2.8.0" + sources."is-decimal-2.0.1" + sources."is-empty-1.2.0" + sources."is-fullwidth-code-point-3.0.0" + sources."is-hexadecimal-2.0.1" + sources."is-installed-globally-0.4.0" + sources."is-npm-5.0.0" + sources."is-obj-2.0.0" + sources."is-path-inside-3.0.3" + sources."is-plain-obj-1.1.0" + sources."is-typedarray-1.0.0" + sources."is-yarn-global-0.3.0" + sources."isarray-0.0.1" + sources."js-tokens-4.0.0" + sources."js-yaml-4.1.0" + sources."json-buffer-3.0.0" + sources."json-parse-even-better-errors-2.3.1" + sources."keyv-3.1.0" + sources."kind-of-6.0.3" + sources."kleur-4.1.4" + sources."latest-version-5.1.0" + (sources."libnpmconfig-1.2.1" // { + dependencies = [ + sources."find-up-3.0.0" + sources."locate-path-3.0.0" + sources."p-limit-2.3.0" + sources."p-locate-3.0.0" + sources."path-exists-3.0.0" + ]; + }) + sources."limit-spawn-0.0.3" + sources."lines-and-columns-1.1.6" + sources."load-plugin-4.0.1" + sources."locate-path-6.0.0" + sources."longest-streak-3.0.1" + sources."lowercase-keys-1.0.1" + sources."lru-cache-6.0.0" + (sources."make-dir-3.1.0" // { + dependencies = [ + sources."semver-6.3.0" + ]; + }) + sources."map-obj-4.3.0" + sources."map-stream-0.1.0" + sources."markdown-table-3.0.1" + sources."mdast-comment-marker-2.1.0" + (sources."mdast-util-find-and-replace-2.1.0" // { + dependencies = [ + sources."escape-string-regexp-5.0.0" + ]; + }) + sources."mdast-util-from-markdown-1.0.4" + sources."mdast-util-frontmatter-1.0.0" + sources."mdast-util-gfm-2.0.0" + sources."mdast-util-gfm-autolink-literal-1.0.2" + sources."mdast-util-gfm-footnote-1.0.0" + sources."mdast-util-gfm-strikethrough-1.0.0" + sources."mdast-util-gfm-table-1.0.1" + sources."mdast-util-gfm-task-list-item-1.0.0" + sources."mdast-util-mdx-1.1.0" + sources."mdast-util-mdx-expression-1.1.1" + sources."mdast-util-mdx-jsx-1.1.1" + sources."mdast-util-mdxjs-esm-1.1.1" + sources."mdast-util-to-markdown-1.2.4" + sources."mdast-util-to-nlcst-5.2.1" + sources."mdast-util-to-string-3.1.0" + sources."meow-10.1.1" + sources."micromark-3.0.7" + sources."micromark-core-commonmark-1.0.4" + sources."micromark-extension-frontmatter-1.0.0" + sources."micromark-extension-gfm-2.0.0" + sources."micromark-extension-gfm-autolink-literal-1.0.2" + sources."micromark-extension-gfm-footnote-1.0.2" + sources."micromark-extension-gfm-strikethrough-1.0.3" + sources."micromark-extension-gfm-table-1.0.3" + sources."micromark-extension-gfm-tagfilter-1.0.0" + sources."micromark-extension-gfm-task-list-item-1.0.2" + sources."micromark-extension-mdx-expression-1.0.2" + sources."micromark-extension-mdx-jsx-1.0.2" + sources."micromark-extension-mdx-md-1.0.0" + sources."micromark-extension-mdxjs-1.0.0" + sources."micromark-extension-mdxjs-esm-1.0.2" + sources."micromark-factory-destination-1.0.0" + sources."micromark-factory-label-1.0.2" + sources."micromark-factory-mdx-expression-1.0.4" + sources."micromark-factory-space-1.0.0" + sources."micromark-factory-title-1.0.2" + sources."micromark-factory-whitespace-1.0.0" + sources."micromark-util-character-1.1.0" + sources."micromark-util-chunked-1.0.0" + sources."micromark-util-classify-character-1.0.0" + sources."micromark-util-combine-extensions-1.0.0" + sources."micromark-util-decode-numeric-character-reference-1.0.0" + sources."micromark-util-decode-string-1.0.1" + sources."micromark-util-encode-1.0.0" + sources."micromark-util-events-to-acorn-1.0.4" + sources."micromark-util-html-tag-name-1.0.0" + sources."micromark-util-normalize-identifier-1.0.0" + sources."micromark-util-resolve-all-1.0.0" + sources."micromark-util-sanitize-uri-1.0.0" + sources."micromark-util-subtokenize-1.0.2" + sources."micromark-util-symbol-1.0.0" + sources."micromark-util-types-1.0.1" + sources."mimic-response-1.0.1" + sources."min-indent-1.0.1" + sources."minimatch-3.0.4" + sources."minimist-1.2.5" + sources."minimist-options-4.1.0" + sources."mri-1.2.0" + sources."ms-2.1.2" + sources."nlcst-is-literal-2.1.0" + sources."nlcst-normalize-3.1.0" + sources."nlcst-search-3.1.0" + sources."nlcst-to-string-3.1.0" + sources."normalize-package-data-3.0.3" + sources."normalize-url-4.5.1" + sources."object-keys-0.4.0" + sources."once-1.4.0" + sources."p-cancelable-1.1.0" + sources."p-limit-3.1.0" + sources."p-locate-5.0.0" + sources."p-try-2.2.0" + (sources."package-json-6.5.0" // { + dependencies = [ + sources."semver-6.3.0" + ]; + }) + (sources."parse-english-5.0.0" // { + dependencies = [ + sources."nlcst-to-string-2.0.4" + ]; + }) + sources."parse-entities-3.1.0" + sources."parse-json-5.2.0" + (sources."parse-latin-5.0.0" // { + dependencies = [ + sources."nlcst-to-string-2.0.4" + ]; + }) + sources."parse5-6.0.1" + sources."path-exists-4.0.0" + sources."path-is-absolute-1.0.1" + sources."pause-stream-0.0.11" + sources."pluralize-8.0.0" + sources."prepend-http-2.0.0" + sources."process-nextick-args-1.0.7" + sources."property-information-6.1.0" + sources."pump-1.0.3" + sources."pump-chain-1.0.0" + sources."pupa-2.1.1" + sources."quick-lru-5.1.1" + sources."quotation-2.0.2" + sources."rc-1.2.8" + sources."read-pkg-6.0.0" + sources."read-pkg-up-8.0.0" + sources."readable-stream-1.0.34" + sources."redent-4.0.0" + sources."registry-auth-token-4.2.1" + sources."registry-url-5.1.0" + sources."rehype-parse-8.0.3" + sources."rehype-retext-3.0.1" + sources."remark-frontmatter-4.0.1" + sources."remark-gfm-3.0.1" + sources."remark-mdx-2.0.0-rc.1" + sources."remark-message-control-7.1.1" + sources."remark-parse-10.0.0" + sources."remark-retext-5.0.1" + sources."responselike-1.0.2" + sources."retext-english-4.1.0" + sources."retext-equality-6.3.0" + sources."retext-profanities-7.1.0" + sources."sade-1.7.4" + sources."safe-buffer-5.2.1" + sources."semver-7.3.5" + (sources."semver-diff-3.1.1" // { + dependencies = [ + sources."semver-6.3.0" + ]; + }) + sources."signal-exit-3.0.5" + sources."sliced-1.0.1" + sources."space-separated-tokens-2.0.1" + (sources."spawn-to-readstream-0.1.3" // { + dependencies = [ + sources."through2-0.4.2" + ]; + }) + sources."spdx-correct-3.1.1" + sources."spdx-exceptions-2.3.0" + sources."spdx-expression-parse-3.0.1" + sources."spdx-license-ids-3.0.10" + sources."split-0.2.10" + (sources."split-transform-stream-0.1.1" // { + dependencies = [ + sources."bubble-stream-error-0.0.1" + sources."through2-0.4.2" + ]; + }) + sources."stream-combiner-0.0.4" + sources."string-width-4.2.3" + sources."string_decoder-0.10.31" + sources."stringify-entities-4.0.2" + sources."strip-ansi-6.0.1" + sources."strip-indent-4.0.0" + sources."strip-json-comments-2.0.1" + sources."supports-color-5.5.0" + sources."through-2.3.8" + (sources."through2-2.0.0" // { + dependencies = [ + sources."isarray-1.0.0" + sources."readable-stream-2.0.6" + sources."xtend-4.0.2" + ]; + }) + sources."to-readable-stream-1.0.0" + sources."to-vfile-7.2.2" + sources."totalist-2.0.0" + sources."trim-newlines-4.0.2" + sources."trough-2.0.2" + sources."type-fest-1.4.0" + sources."typedarray-0.0.6" + sources."typedarray-to-buffer-3.1.5" + sources."unherit-3.0.0" + (sources."unified-10.1.0" // { + dependencies = [ + sources."is-plain-obj-4.0.0" + ]; + }) + sources."unified-diff-4.0.1" + (sources."unified-engine-9.0.4" // { + dependencies = [ + sources."is-plain-obj-4.0.0" + ]; + }) + (sources."unified-message-control-4.0.0" // { + dependencies = [ + sources."unist-util-visit-3.1.0" + ]; + }) + sources."unique-string-2.0.0" + sources."unist-util-inspect-7.0.0" + sources."unist-util-is-5.1.1" + sources."unist-util-modify-children-2.0.0" + sources."unist-util-position-4.0.1" + sources."unist-util-position-from-estree-1.1.1" + sources."unist-util-remove-position-4.0.1" + sources."unist-util-stringify-position-3.0.0" + (sources."unist-util-visit-4.1.0" // { + dependencies = [ + sources."unist-util-visit-parents-5.1.0" + ]; + }) + sources."unist-util-visit-children-1.1.4" + sources."unist-util-visit-parents-4.1.1" + (sources."update-notifier-5.1.0" // { + dependencies = [ + sources."ansi-styles-4.3.0" + sources."chalk-4.1.2" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + sources."has-flag-4.0.0" + sources."supports-color-7.2.0" + ]; + }) + sources."url-parse-lax-3.0.0" + sources."util-deprecate-1.0.2" + sources."uvu-0.5.2" + sources."validate-npm-package-license-3.0.4" + sources."vfile-5.2.0" + sources."vfile-find-up-6.0.0" + sources."vfile-location-4.0.1" + sources."vfile-message-3.0.2" + (sources."vfile-reporter-7.0.2" // { + dependencies = [ + sources."ansi-regex-6.0.1" + sources."emoji-regex-9.2.2" + sources."has-flag-5.0.1" + sources."is-fullwidth-code-point-4.0.0" + sources."string-width-5.0.1" + sources."strip-ansi-7.0.1" + sources."supports-color-9.0.2" + ]; + }) + sources."vfile-sort-3.0.0" + sources."vfile-statistics-2.0.0" + sources."web-namespaces-2.0.1" + sources."widest-line-3.1.0" + (sources."wrap-ansi-7.0.0" // { + dependencies = [ + sources."ansi-styles-4.3.0" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + ]; + }) + sources."wrappy-1.0.2" + sources."write-file-atomic-3.0.3" + sources."xdg-basedir-4.0.0" + sources."xtend-2.1.2" + sources."yallist-4.0.0" + sources."yargs-parser-20.2.9" + sources."yocto-queue-0.1.0" + sources."zwitch-2.0.2" + ]; + buildInputs = globalBuildInputs; + meta = { + description = "Catch insensitive, inconsiderate writing"; + homepage = "https://alexjs.com"; + license = "MIT"; + }; + production = true; + bypassCache = true; + reconstructLock = true; + }; alloy = nodeEnv.buildNodePackage { name = "alloy"; packageName = "alloy"; @@ -73035,7 +75869,7 @@ in sources."source-map-0.5.7" ]; }) - sources."@babel/helper-compilation-targets-7.16.0" + sources."@babel/helper-compilation-targets-7.16.3" sources."@babel/helper-function-name-7.16.0" sources."@babel/helper-get-function-arity-7.16.0" sources."@babel/helper-hoist-variables-7.16.0" @@ -73048,11 +75882,11 @@ in sources."@babel/helper-split-export-declaration-7.16.0" sources."@babel/helper-validator-identifier-7.15.7" sources."@babel/helper-validator-option-7.14.5" - sources."@babel/helpers-7.16.0" + sources."@babel/helpers-7.16.3" sources."@babel/highlight-7.16.0" - sources."@babel/parser-7.16.2" + sources."@babel/parser-7.16.3" sources."@babel/template-7.16.0" - sources."@babel/traverse-7.16.0" + sources."@babel/traverse-7.16.3" sources."@babel/types-7.16.0" sources."JSV-4.0.2" sources."ansi-styles-3.2.1" @@ -73061,7 +75895,7 @@ in sources."balanced-match-1.0.2" sources."brace-expansion-1.1.11" sources."browserslist-4.17.6" - sources."caniuse-lite-1.0.30001274" + sources."caniuse-lite-1.0.30001280" sources."chalk-2.4.2" sources."color-convert-1.9.3" sources."color-name-1.1.3" @@ -73071,7 +75905,7 @@ in sources."convert-source-map-1.8.0" sources."debug-4.3.2" sources."ejs-3.1.6" - sources."electron-to-chromium-1.3.887" + sources."electron-to-chromium-1.3.895" sources."ensure-posix-path-1.1.1" sources."escalade-3.1.1" sources."escape-string-regexp-1.0.5" @@ -73166,7 +76000,7 @@ in dependencies = [ sources."@types/glob-7.2.0" sources."@types/minimatch-3.0.5" - sources."@types/node-16.11.6" + sources."@types/node-16.11.7" sources."balanced-match-1.0.2" sources."brace-expansion-1.1.11" sources."chromium-pickle-js-0.2.0" @@ -73201,10 +76035,10 @@ in }; dependencies = [ sources."browserslist-4.17.6" - sources."caniuse-lite-1.0.30001274" - sources."electron-to-chromium-1.3.887" + sources."caniuse-lite-1.0.30001280" + sources."electron-to-chromium-1.3.895" sources."escalade-3.1.1" - sources."fraction.js-4.1.1" + sources."fraction.js-4.1.2" sources."node-releases-2.0.1" sources."normalize-range-0.1.2" sources."picocolors-1.0.0" @@ -73230,14 +76064,14 @@ in }; dependencies = [ sources."@tootallnate/once-1.1.2" - sources."@types/node-16.11.6" + sources."@types/node-16.11.7" sources."@types/yauzl-2.9.2" sources."agent-base-6.0.2" sources."ansi-escapes-4.3.2" sources."ansi-regex-5.0.1" sources."ansi-styles-4.3.0" sources."ast-types-0.13.4" - (sources."aws-sdk-2.1020.0" // { + (sources."aws-sdk-2.1027.0" // { dependencies = [ sources."uuid-3.3.2" ]; @@ -73438,24 +76272,441 @@ in bypassCache = true; reconstructLock = true; }; + awesome-lint = nodeEnv.buildNodePackage { + name = "awesome-lint"; + packageName = "awesome-lint"; + version = "0.18.0"; + src = fetchurl { + url = "https://registry.npmjs.org/awesome-lint/-/awesome-lint-0.18.0.tgz"; + sha512 = "Jc5aV6fjaAnx5Rmgk26lSUAreSU4UAFrRdedTYK1x2yXB5348X5bHN7J0xUf70AUw5ujloYVkZPCw4mwuVXllg=="; + }; + dependencies = [ + sources."@babel/code-frame-7.16.0" + sources."@babel/helper-validator-identifier-7.15.7" + (sources."@babel/highlight-7.16.0" // { + dependencies = [ + sources."ansi-styles-3.2.1" + sources."chalk-2.4.2" + sources."color-convert-1.9.3" + sources."color-name-1.1.3" + sources."has-flag-3.0.0" + sources."supports-color-5.5.0" + ]; + }) + sources."@nodelib/fs.scandir-2.1.5" + sources."@nodelib/fs.stat-2.0.5" + sources."@nodelib/fs.walk-1.2.8" + sources."@sindresorhus/is-0.14.0" + sources."@szmarczak/http-timer-1.1.2" + sources."@types/eslint-7.28.2" + sources."@types/estree-0.0.50" + sources."@types/json-schema-7.0.9" + sources."@types/mdast-3.0.10" + sources."@types/minimist-1.2.2" + sources."@types/normalize-package-data-2.4.1" + sources."@types/unist-2.0.6" + sources."aggregate-error-3.1.0" + (sources."ansi-escapes-4.3.2" // { + dependencies = [ + sources."type-fest-0.21.3" + ]; + }) + sources."ansi-regex-5.0.1" + sources."ansi-styles-4.3.0" + sources."append-type-1.0.2" + sources."array-to-sentence-1.1.0" + sources."array-union-2.1.0" + sources."arrify-2.0.1" + sources."assert-valid-glob-opts-1.0.0" + sources."bail-1.0.5" + sources."balanced-match-1.0.2" + sources."base64-js-1.5.1" + sources."bl-4.1.0" + sources."brace-expansion-1.1.11" + sources."braces-3.0.2" + sources."buffer-5.7.1" + (sources."cacheable-request-6.1.0" // { + dependencies = [ + sources."get-stream-5.2.0" + sources."lowercase-keys-2.0.0" + ]; + }) + sources."camelcase-5.3.1" + sources."camelcase-keys-6.2.2" + sources."case-1.6.3" + sources."chalk-4.1.2" + sources."character-entities-1.2.4" + sources."character-entities-legacy-1.1.4" + sources."character-reference-invalid-1.1.4" + sources."clean-stack-2.2.0" + sources."cli-cursor-3.1.0" + sources."cli-spinners-2.6.1" + sources."clone-1.0.4" + sources."clone-response-1.0.2" + sources."co-3.1.0" + sources."collapse-white-space-1.0.6" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + sources."concat-map-0.0.1" + sources."cross-spawn-6.0.5" + sources."crypto-random-string-2.0.0" + sources."debug-4.3.2" + sources."decamelize-1.2.0" + (sources."decamelize-keys-1.1.0" // { + dependencies = [ + sources."map-obj-1.0.1" + ]; + }) + sources."decompress-response-3.3.0" + sources."defaults-1.0.3" + sources."defer-to-connect-1.1.3" + (sources."del-6.0.0" // { + dependencies = [ + sources."rimraf-3.0.2" + ]; + }) + sources."dir-glob-3.0.1" + sources."duplexer3-0.1.4" + sources."emoji-regex-9.2.2" + sources."end-of-stream-1.4.4" + sources."error-ex-1.3.2" + sources."escape-string-regexp-1.0.5" + sources."eslint-formatter-pretty-4.1.0" + sources."eslint-rule-docs-1.1.231" + sources."execa-1.0.0" + sources."extend-3.0.2" + sources."fast-glob-3.2.7" + sources."fastq-1.13.0" + sources."fill-range-7.0.1" + sources."find-up-4.1.0" + sources."fs.realpath-1.0.0" + sources."function-bind-1.1.1" + sources."get-stream-4.1.0" + sources."git-clone-0.1.0" + sources."github-slugger-1.4.0" + sources."github-url-to-object-4.0.6" + sources."glob-7.2.0" + sources."glob-option-error-1.0.0" + sources."glob-parent-5.1.2" + sources."globby-11.0.4" + sources."got-9.6.0" + sources."graceful-fs-4.2.8" + sources."hard-rejection-2.1.0" + sources."has-1.0.3" + sources."has-flag-4.0.0" + sources."hosted-git-info-4.0.2" + sources."http-cache-semantics-4.1.0" + sources."ieee754-1.2.1" + sources."ignore-5.1.9" + sources."indent-string-4.0.0" + sources."indexed-filter-1.0.3" + sources."inflight-1.0.6" + sources."inherits-2.0.4" + sources."inspect-with-kind-1.0.5" + sources."irregular-plurals-3.3.0" + sources."is-alphabetical-1.0.4" + sources."is-alphanumerical-1.0.4" + sources."is-arrayish-0.2.1" + sources."is-buffer-2.0.5" + sources."is-core-module-2.8.0" + sources."is-decimal-1.0.4" + sources."is-extglob-2.1.1" + sources."is-fullwidth-code-point-3.0.0" + sources."is-github-url-1.2.2" + sources."is-glob-4.0.3" + sources."is-hexadecimal-1.0.4" + sources."is-interactive-1.0.0" + sources."is-number-7.0.0" + sources."is-path-cwd-2.2.0" + sources."is-path-inside-3.0.3" + sources."is-plain-obj-1.1.0" + sources."is-stream-1.1.0" + sources."is-unicode-supported-0.1.0" + sources."is-url-1.2.4" + sources."is-url-superb-4.0.0" + sources."isexe-2.0.0" + sources."js-tokens-4.0.0" + sources."json-buffer-3.0.0" + sources."json-parse-even-better-errors-2.3.1" + sources."keyv-3.1.0" + sources."kind-of-6.0.3" + sources."lines-and-columns-1.1.6" + sources."locate-path-5.0.0" + sources."lodash.iteratee-4.7.0" + sources."log-symbols-4.1.0" + sources."longest-streak-2.0.4" + sources."lowercase-keys-1.0.1" + sources."lru-cache-6.0.0" + sources."map-obj-4.3.0" + sources."mdast-comment-marker-1.1.2" + (sources."mdast-util-from-markdown-0.8.5" // { + dependencies = [ + sources."mdast-util-to-string-2.0.0" + ]; + }) + sources."mdast-util-heading-style-1.0.6" + (sources."mdast-util-to-markdown-0.6.5" // { + dependencies = [ + sources."mdast-util-to-string-2.0.0" + ]; + }) + sources."mdast-util-to-string-1.1.0" + sources."meow-9.0.0" + sources."merge2-1.4.1" + sources."micromark-2.11.4" + sources."micromatch-4.0.4" + sources."mimic-fn-2.1.0" + sources."mimic-response-1.0.1" + sources."min-indent-1.0.1" + sources."minimatch-3.0.4" + (sources."minimist-options-4.1.0" // { + dependencies = [ + sources."arrify-1.0.1" + ]; + }) + sources."ms-2.1.2" + sources."nice-try-1.0.5" + (sources."normalize-package-data-3.0.3" // { + dependencies = [ + sources."semver-7.3.5" + ]; + }) + sources."normalize-url-4.5.1" + sources."npm-run-path-2.0.2" + sources."object-assign-4.1.1" + sources."once-1.4.0" + sources."onetime-5.1.2" + sources."ora-5.4.1" + sources."p-cancelable-1.1.0" + sources."p-finally-1.0.0" + sources."p-limit-2.3.0" + sources."p-locate-4.1.0" + sources."p-map-4.0.0" + sources."p-try-2.2.0" + sources."parse-entities-2.0.0" + sources."parse-github-url-1.0.2" + sources."parse-json-5.2.0" + sources."path-exists-4.0.0" + sources."path-is-absolute-1.0.1" + sources."path-key-2.0.1" + sources."path-parse-1.0.7" + sources."path-type-4.0.0" + sources."picomatch-2.3.0" + sources."pify-5.0.0" + sources."plur-4.0.0" + sources."pluralize-8.0.0" + sources."prepend-http-2.0.0" + sources."pump-3.0.0" + sources."queue-microtask-1.2.3" + sources."quick-lru-4.0.1" + (sources."read-pkg-5.2.0" // { + dependencies = [ + sources."hosted-git-info-2.8.9" + sources."normalize-package-data-2.5.0" + sources."type-fest-0.6.0" + ]; + }) + (sources."read-pkg-up-7.0.1" // { + dependencies = [ + sources."type-fest-0.8.1" + ]; + }) + sources."readable-stream-3.6.0" + sources."redent-3.0.0" + sources."remark-13.0.0" + sources."remark-lint-8.0.0" + sources."remark-lint-blockquote-indentation-2.0.1" + sources."remark-lint-checkbox-character-style-3.0.0" + sources."remark-lint-checkbox-content-indent-3.0.0" + sources."remark-lint-code-block-style-2.0.1" + sources."remark-lint-definition-case-2.0.1" + sources."remark-lint-definition-spacing-2.0.1" + (sources."remark-lint-double-link-0.1.3" // { + dependencies = [ + sources."normalize-url-5.3.1" + ]; + }) + sources."remark-lint-emphasis-marker-2.0.1" + sources."remark-lint-fenced-code-marker-2.0.1" + sources."remark-lint-file-extension-1.0.5" + sources."remark-lint-final-newline-1.0.5" + sources."remark-lint-hard-break-spaces-2.0.1" + sources."remark-lint-heading-style-2.0.1" + sources."remark-lint-link-title-style-2.0.1" + sources."remark-lint-list-item-bullet-indent-3.0.0" + sources."remark-lint-list-item-content-indent-2.0.1" + sources."remark-lint-list-item-indent-2.0.1" + sources."remark-lint-match-punctuation-0.2.1" + sources."remark-lint-no-auto-link-without-protocol-2.0.1" + sources."remark-lint-no-blockquote-without-marker-4.0.0" + sources."remark-lint-no-emphasis-as-heading-2.0.1" + (sources."remark-lint-no-empty-sections-4.0.0" // { + dependencies = [ + sources."unist-util-visit-1.4.1" + ]; + }) + sources."remark-lint-no-file-name-articles-1.0.5" + sources."remark-lint-no-file-name-consecutive-dashes-1.0.5" + sources."remark-lint-no-file-name-irregular-characters-1.0.5" + sources."remark-lint-no-file-name-mixed-case-1.0.5" + sources."remark-lint-no-file-name-outer-dashes-1.0.6" + sources."remark-lint-no-heading-content-indent-3.0.0" + sources."remark-lint-no-heading-indent-3.0.0" + sources."remark-lint-no-heading-punctuation-2.0.1" + sources."remark-lint-no-inline-padding-3.0.0" + sources."remark-lint-no-multiple-toplevel-headings-2.0.1" + sources."remark-lint-no-repeat-punctuation-0.1.4" + sources."remark-lint-no-shell-dollars-2.0.2" + sources."remark-lint-no-table-indentation-3.0.0" + sources."remark-lint-no-undefined-references-3.0.0" + sources."remark-lint-no-unneeded-full-reference-image-2.0.1" + sources."remark-lint-no-unneeded-full-reference-link-2.0.1" + sources."remark-lint-no-unused-definitions-2.0.1" + sources."remark-lint-ordered-list-marker-style-2.0.1" + sources."remark-lint-ordered-list-marker-value-2.0.1" + sources."remark-lint-rule-style-2.0.1" + sources."remark-lint-strong-marker-2.0.1" + sources."remark-lint-table-cell-padding-3.0.0" + sources."remark-lint-table-pipe-alignment-2.0.1" + sources."remark-lint-table-pipes-3.0.0" + sources."remark-lint-unordered-list-marker-style-2.0.1" + sources."remark-message-control-6.0.0" + sources."remark-parse-9.0.0" + sources."remark-stringify-9.0.1" + sources."repeat-string-1.6.1" + sources."resolve-1.20.0" + sources."responselike-1.0.2" + sources."restore-cursor-3.1.0" + sources."reusify-1.0.4" + sources."rimraf-2.7.1" + sources."rmfr-2.0.0" + sources."run-parallel-1.2.0" + sources."safe-buffer-5.2.1" + sources."semver-5.7.1" + sources."shebang-command-1.2.0" + sources."shebang-regex-1.0.0" + sources."signal-exit-3.0.5" + sources."slash-3.0.0" + sources."sliced-1.0.1" + sources."spdx-correct-3.1.1" + sources."spdx-exceptions-2.3.0" + sources."spdx-expression-parse-3.0.1" + sources."spdx-license-ids-3.0.10" + (sources."string-width-4.2.3" // { + dependencies = [ + sources."emoji-regex-8.0.0" + ]; + }) + sources."string_decoder-1.3.0" + sources."strip-ansi-6.0.1" + sources."strip-eof-1.0.0" + sources."strip-indent-3.0.0" + sources."supports-color-7.2.0" + sources."supports-hyperlinks-2.2.0" + sources."temp-dir-2.0.0" + (sources."tempy-1.0.1" // { + dependencies = [ + sources."is-stream-2.0.1" + sources."type-fest-0.16.0" + ]; + }) + sources."to-readable-stream-1.0.0" + sources."to-regex-range-5.0.1" + sources."to-vfile-6.1.0" + sources."trim-newlines-3.0.1" + sources."trough-1.0.5" + sources."type-fest-0.18.1" + (sources."unified-9.2.2" // { + dependencies = [ + sources."is-plain-obj-2.1.0" + ]; + }) + sources."unified-lint-rule-1.0.6" + sources."unified-message-control-3.0.3" + sources."unique-string-2.0.0" + (sources."unist-util-find-1.0.2" // { + dependencies = [ + sources."unist-util-visit-1.4.1" + ]; + }) + (sources."unist-util-find-all-after-3.0.2" // { + dependencies = [ + sources."unist-util-is-4.1.0" + ]; + }) + (sources."unist-util-find-all-before-3.0.1" // { + dependencies = [ + sources."unist-util-is-4.1.0" + ]; + }) + (sources."unist-util-find-all-between-2.1.0" // { + dependencies = [ + sources."unist-util-is-4.1.0" + ]; + }) + sources."unist-util-generated-1.1.6" + sources."unist-util-is-3.0.0" + sources."unist-util-map-1.0.5" + sources."unist-util-position-3.1.0" + sources."unist-util-stringify-position-2.0.3" + (sources."unist-util-to-list-of-char-0.1.3" // { + dependencies = [ + sources."unist-util-visit-1.4.1" + ]; + }) + (sources."unist-util-visit-2.0.3" // { + dependencies = [ + sources."unist-util-is-4.1.0" + sources."unist-util-visit-parents-3.1.1" + ]; + }) + sources."unist-util-visit-parents-2.1.2" + sources."url-parse-lax-3.0.0" + sources."util-deprecate-1.0.2" + sources."validate-glob-opts-1.0.2" + sources."validate-npm-package-license-3.0.4" + sources."vfile-4.2.1" + sources."vfile-location-3.2.0" + sources."vfile-message-2.0.4" + sources."vfile-reporter-pretty-5.0.0" + sources."vfile-statistics-1.1.4" + sources."vfile-to-eslint-2.0.2" + sources."wcwidth-1.0.1" + sources."which-1.3.1" + sources."wrapped-1.0.1" + sources."wrappy-1.0.2" + sources."yallist-4.0.0" + sources."yargs-parser-20.2.9" + sources."zwitch-1.0.5" + ]; + buildInputs = globalBuildInputs; + meta = { + description = "Linter for Awesome lists"; + homepage = "https://github.com/sindresorhus/awesome-lint#readme"; + license = "MIT"; + }; + production = true; + bypassCache = true; + reconstructLock = true; + }; balanceofsatoshis = nodeEnv.buildNodePackage { name = "balanceofsatoshis"; packageName = "balanceofsatoshis"; - version = "11.8.1"; + version = "11.10.0"; src = fetchurl { - url = "https://registry.npmjs.org/balanceofsatoshis/-/balanceofsatoshis-11.8.1.tgz"; - sha512 = "ZjmReG7d6Kt6x8L5LHO3nRXMltdFLStNjal7oBv4DuL7p0X+Z+rMn4dE+8NihSlNUPdhKdKcOD4VNDrH6Y9ayg=="; + url = "https://registry.npmjs.org/balanceofsatoshis/-/balanceofsatoshis-11.10.0.tgz"; + sha512 = "PJeibrVjtgeG/62w+QFw0bqxZj8FaRmRKHai5wewC3MAO1fxLDcIrTJP7jADRpC5O9ALzpO0yvtu5DvG76iK8A=="; }; dependencies = [ sources."@alexbosworth/html2unicode-1.1.5" sources."@alexbosworth/node-fetch-2.6.2" sources."@alexbosworth/saxophone-0.6.2" - (sources."@grpc/grpc-js-1.3.7" // { + (sources."@grpc/grpc-js-1.4.2" // { dependencies = [ - sources."@types/node-16.11.6" + sources."@types/node-16.11.7" ]; }) - sources."@grpc/proto-loader-0.6.4" + sources."@grpc/proto-loader-0.6.6" sources."@handsontable/formulajs-2.0.2" sources."@mitmaro/errors-1.0.0" sources."@mitmaro/http-authorization-header-1.0.0" @@ -73475,7 +76726,7 @@ in sources."@types/caseless-0.12.2" sources."@types/connect-3.4.35" sources."@types/express-4.17.13" - sources."@types/express-serve-static-core-4.17.24" + sources."@types/express-serve-static-core-4.17.25" sources."@types/long-4.0.1" sources."@types/mime-1.3.2" sources."@types/node-10.12.18" @@ -73484,10 +76735,10 @@ in sources."@types/request-2.48.7" sources."@types/serve-static-1.13.10" sources."@types/tough-cookie-4.0.1" - sources."@types/ws-7.4.7" + sources."@types/ws-8.2.0" sources."abort-controller-3.0.0" sources."accepts-1.3.7" - sources."ajv-8.6.3" + sources."ajv-8.7.1" sources."ansi-0.3.1" (sources."ansi-align-3.0.1" // { dependencies = [ @@ -73545,7 +76796,7 @@ in sources."bn.js-5.2.0" ]; }) - sources."bolt09-0.1.5" + sources."bolt09-0.2.0" (sources."boxen-5.1.2" // { dependencies = [ sources."ansi-regex-5.0.1" @@ -73579,7 +76830,7 @@ in sources."colorette-1.4.0" ]; }) - sources."cbor-8.0.2" + sources."cbor-8.1.0" sources."cert-info-1.5.1" (sources."chalk-1.1.3" // { dependencies = [ @@ -73680,20 +76931,12 @@ in sources."get-caller-file-2.0.5" sources."get-stream-4.1.0" sources."global-dirs-3.0.0" - (sources."goldengate-10.4.0" // { + (sources."goldengate-10.4.1" // { dependencies = [ - sources."async-3.2.1" - (sources."asyncjs-util-1.2.6" // { - dependencies = [ - sources."async-3.2.0" - ]; - }) sources."bech32-2.0.0" sources."bn.js-5.2.0" - sources."bolt07-1.7.3" - sources."cbor-8.0.0" - sources."invoices-2.0.0" - sources."ln-service-52.0.3" + sources."cbor-8.0.2" + sources."ln-service-52.14.3" ]; }) sources."got-9.6.0" @@ -73746,7 +76989,6 @@ in dependencies = [ sources."bech32-2.0.0" sources."bn.js-5.2.0" - sources."bolt09-0.2.0" ]; }) sources."ipaddr.js-1.9.1" @@ -73780,78 +77022,118 @@ in sources."keyv-3.1.0" sources."kind-of-6.0.3" sources."latest-version-5.1.0" - (sources."lightning-4.1.3" // { + (sources."lightning-4.13.1" // { dependencies = [ - sources."@types/node-16.7.3" - sources."async-3.2.1" - (sources."asyncjs-util-1.2.6" // { - dependencies = [ - sources."async-3.2.0" - ]; - }) - sources."bech32-2.0.0" - sources."bn.js-5.2.0" - sources."bolt07-1.7.3" - sources."cbor-8.0.0" - sources."invoices-2.0.0" - ]; - }) - (sources."ln-accounting-5.0.3" // { - dependencies = [ - sources."@grpc/proto-loader-0.6.5" - sources."@types/node-16.9.1" - sources."async-3.2.1" - (sources."asyncjs-util-1.2.6" // { - dependencies = [ - sources."async-3.2.0" - ]; - }) - sources."bech32-2.0.0" - sources."bn.js-5.2.0" - sources."bolt07-1.7.3" - sources."cbor-8.0.0" - sources."invoices-2.0.0" - sources."lightning-4.5.0" - sources."ln-service-52.4.0" - sources."ws-8.2.2" - ]; - }) - (sources."ln-service-52.14.2" // { - dependencies = [ - sources."@grpc/grpc-js-1.4.2" - sources."@grpc/proto-loader-0.6.6" sources."@types/node-16.11.6" - sources."@types/ws-8.2.0" sources."bn.js-5.2.0" - sources."bolt09-0.2.0" - sources."lightning-4.12.2" - sources."ws-8.2.3" + sources."cbor-8.0.2" ]; }) - (sources."ln-sync-2.1.0" // { + (sources."ln-accounting-5.0.4" // { dependencies = [ - sources."@grpc/proto-loader-0.6.5" - sources."@types/node-16.10.4" - sources."@types/ws-8.2.0" - sources."async-3.2.1" - (sources."asyncjs-util-1.2.6" // { - dependencies = [ - sources."async-3.2.0" - ]; - }) + sources."ln-service-52.14.3" + ]; + }) + (sources."ln-service-52.15.0" // { + dependencies = [ + sources."@grpc/grpc-js-1.4.4" + sources."@types/node-16.11.7" + sources."bn.js-5.2.0" + sources."lightning-4.14.1" + ]; + }) + (sources."ln-sync-3.0.0" // { + dependencies = [ + sources."cbor-8.0.2" + ]; + }) + (sources."ln-telegram-3.4.0" // { + dependencies = [ + sources."@grpc/grpc-js-1.3.7" + sources."@grpc/proto-loader-0.6.4" + sources."@types/node-16.11.7" + sources."@types/ws-7.4.7" + sources."ansi-regex-5.0.1" sources."bech32-2.0.0" sources."bn.js-5.2.0" sources."bolt07-1.7.3" - sources."bolt09-0.2.0" - (sources."invoices-2.0.0" // { + sources."bolt09-0.1.5" + sources."cbor-8.0.0" + (sources."goldengate-10.4.0" // { dependencies = [ - sources."bolt09-0.1.5" + sources."async-3.2.1" + (sources."asyncjs-util-1.2.6" // { + dependencies = [ + sources."async-3.2.0" + ]; + }) + sources."ln-service-52.0.3" ]; }) - sources."lightning-4.10.7" + sources."invoices-2.0.0" + sources."is-fullwidth-code-point-3.0.0" + (sources."lightning-4.1.3" // { + dependencies = [ + sources."@types/node-16.7.3" + sources."async-3.2.1" + (sources."asyncjs-util-1.2.6" // { + dependencies = [ + sources."async-3.2.0" + ]; + }) + ]; + }) + (sources."ln-accounting-5.0.3" // { + dependencies = [ + sources."@grpc/proto-loader-0.6.5" + sources."@types/node-16.9.1" + sources."async-3.2.1" + (sources."asyncjs-util-1.2.6" // { + dependencies = [ + sources."async-3.2.0" + ]; + }) + sources."lightning-4.5.0" + sources."ln-service-52.4.0" + sources."ws-8.2.2" + ]; + }) + (sources."ln-service-52.14.2" // { + dependencies = [ + sources."@grpc/grpc-js-1.4.2" + sources."@grpc/proto-loader-0.6.6" + sources."@types/node-16.11.6" + sources."@types/ws-8.2.0" + sources."bolt07-1.7.4" + sources."bolt09-0.2.0" + sources."cbor-8.0.2" + sources."invoices-2.0.1" + sources."lightning-4.12.2" + sources."ws-8.2.3" + ]; + }) + (sources."ln-sync-2.1.0" // { + dependencies = [ + sources."@grpc/proto-loader-0.6.5" + sources."@types/node-16.10.4" + sources."@types/ws-8.2.0" + sources."async-3.2.1" + (sources."asyncjs-util-1.2.6" // { + dependencies = [ + sources."async-3.2.0" + ]; + }) + sources."bolt09-0.2.0" + sources."cbor-8.0.2" + sources."lightning-4.10.7" + ]; + }) + sources."string-width-4.2.3" + sources."strip-ansi-6.0.1" + sources."table-6.7.2" + sources."ws-8.2.0" ]; }) - sources."ln-telegram-3.4.0" sources."lodash-4.17.21" sources."lodash.camelcase-4.3.0" sources."lodash.clonedeep-4.5.0" @@ -73886,8 +77168,8 @@ in sources."methods-1.1.2" sources."micromist-1.1.0" sources."mime-1.6.0" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."mimic-fn-2.1.0" sources."mimic-response-1.0.1" sources."minimalistic-assert-1.0.1" @@ -73938,7 +77220,15 @@ in sources."semver-6.3.0" ]; }) - sources."paid-services-3.1.1" + (sources."paid-services-3.1.1" // { + dependencies = [ + sources."@types/node-16.11.6" + sources."bn.js-5.2.0" + sources."cbor-8.0.2" + sources."lightning-4.12.2" + sources."ln-service-52.14.2" + ]; + }) sources."parseurl-1.3.3" sources."path-to-regexp-0.1.7" sources."pinkie-2.0.4" @@ -73947,13 +77237,11 @@ in sources."prettyjson-1.2.1" (sources."probing-2.0.0" // { dependencies = [ - sources."@grpc/grpc-js-1.4.2" - sources."@grpc/proto-loader-0.6.6" sources."@types/node-16.11.6" - sources."@types/ws-8.2.0" sources."bech32-2.0.0" sources."bn.js-5.2.0" - sources."bolt09-0.2.0" + sources."bolt09-0.1.5" + sources."cbor-8.0.2" (sources."invoices-2.0.0" // { dependencies = [ sources."bolt07-1.7.3" @@ -73966,16 +77254,16 @@ in sources."async-3.2.0" ]; }) + sources."bolt09-0.2.0" ]; }) sources."ln-service-52.14.1" - sources."ws-8.2.3" ]; }) sources."process-nextick-args-2.0.1" (sources."protobufjs-6.11.2" // { dependencies = [ - sources."@types/node-16.11.6" + sources."@types/node-16.11.7" ]; }) sources."proxy-addr-2.0.7" @@ -74046,7 +77334,7 @@ in sources."strip-ansi-4.0.0" sources."strip-json-comments-2.0.1" sources."supports-color-2.0.0" - (sources."table-6.7.2" // { + (sources."table-6.7.3" // { dependencies = [ sources."ansi-regex-5.0.1" sources."is-fullwidth-code-point-3.0.0" @@ -74084,7 +77372,7 @@ in sources."typedarray-0.0.6" sources."typedarray-to-buffer-3.1.5" sources."typeforce-1.18.0" - sources."typegram-3.4.3" + sources."typegram-3.5.1" sources."unique-string-2.0.0" sources."unpipe-1.0.0" (sources."update-notifier-5.1.0" // { @@ -74130,7 +77418,7 @@ in }) sources."wrappy-1.0.2" sources."write-file-atomic-3.0.3" - sources."ws-8.2.0" + sources."ws-8.2.3" sources."xdg-basedir-4.0.0" sources."y18n-5.0.8" sources."yallist-4.0.0" @@ -74173,7 +77461,7 @@ in sources."acorn-walk-6.2.0" sources."ajv-6.12.6" sources."array-equal-1.0.0" - sources."asn1-0.2.4" + sources."asn1-0.2.6" sources."assert-plus-1.0.0" sources."async-limiter-1.0.1" sources."asynckit-0.4.0" @@ -74233,8 +77521,8 @@ in sources."levn-0.3.0" sources."lodash-4.17.21" sources."lodash.sortby-4.7.0" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."minimatch-3.0.4" sources."nwsapi-2.2.0" sources."oauth-sign-0.9.0" @@ -74544,7 +77832,7 @@ in sources."loud-rejection-1.6.0" sources."map-obj-1.0.1" sources."meow-3.7.0" - sources."mime-db-1.50.0" + sources."mime-db-1.51.0" sources."minimatch-3.0.4" sources."minimist-1.2.5" sources."mkdirp-0.5.5" @@ -74972,8 +78260,8 @@ in sources."lodash.isfinite-3.3.2" sources."micromatch-4.0.4" sources."mime-1.4.1" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."minimatch-3.0.4" sources."mitt-1.2.0" sources."ms-2.0.0" @@ -75105,7 +78393,7 @@ in sources."@babel/code-frame-7.16.0" sources."@babel/helper-validator-identifier-7.15.7" sources."@babel/highlight-7.16.0" - sources."@babel/parser-7.16.2" + sources."@babel/parser-7.16.3" sources."@babel/types-7.16.0" sources."@kwsites/file-exists-1.1.1" sources."@kwsites/promise-deferred-1.1.1" @@ -75122,7 +78410,7 @@ in sources."array-flatten-1.1.1" sources."arrify-1.0.1" sources."asap-2.0.6" - sources."asn1-0.2.4" + sources."asn1-0.2.6" sources."assert-never-1.2.1" sources."assert-plus-1.0.0" sources."async-3.2.2" @@ -75355,8 +78643,8 @@ in sources."merkle-lib-2.0.10" sources."methods-1.1.2" sources."mime-1.6.0" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."min-indent-1.0.1" sources."minimalistic-assert-1.0.1" sources."minimalistic-crypto-utils-1.0.1" @@ -75567,7 +78855,7 @@ in sources."@protobufjs/pool-1.1.0" sources."@protobufjs/utf8-1.1.0" sources."@types/long-4.0.1" - sources."@types/node-16.11.6" + sources."@types/node-16.11.7" sources."addr-to-ip-port-1.5.4" sources."airplay-js-0.2.16" sources."ajv-6.12.6" @@ -75578,7 +78866,7 @@ in sources."array-find-index-1.0.2" sources."array-loop-1.0.0" sources."array-shuffle-1.0.1" - sources."asn1-0.2.4" + sources."asn1-0.2.6" sources."assert-plus-1.0.0" sources."asynckit-0.4.0" sources."aws-sign2-0.7.0" @@ -75748,8 +79036,8 @@ in ]; }) sources."mime-1.6.0" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."mimic-response-1.0.1" sources."minimatch-3.0.4" sources."minimist-1.2.5" @@ -75824,8 +79112,9 @@ in sources."qs-6.5.2" sources."query-string-1.0.1" sources."queue-microtask-1.2.3" + sources."queue-tick-1.0.0" sources."random-access-file-2.2.0" - sources."random-access-storage-1.4.1" + sources."random-access-storage-1.4.2" sources."random-iterate-1.0.1" sources."randombytes-2.1.0" sources."range-parser-1.2.1" @@ -76570,17 +79859,17 @@ in cdk8s-cli = nodeEnv.buildNodePackage { name = "cdk8s-cli"; packageName = "cdk8s-cli"; - version = "1.0.21"; + version = "1.0.28"; src = fetchurl { - url = "https://registry.npmjs.org/cdk8s-cli/-/cdk8s-cli-1.0.21.tgz"; - sha512 = "p/yY0fMMwJCHLRZP2mVpSxwOjVZIYPuefVdByejE3Wls+HEH0HUM+PvbON7G7A5HwUPuvnZAEe56weriMG57Ww=="; + url = "https://registry.npmjs.org/cdk8s-cli/-/cdk8s-cli-1.0.28.tgz"; + sha512 = "JAcF1zh6/ZfiZCnjpjqeuTi+DfbAW9zL7gBYWqCAZMXdj1BHGsOmjXomHRHLU/fE80lFYJSYUmrjfJw+neMQ4Q=="; }; dependencies = [ - sources."@jsii/check-node-1.42.0" - sources."@jsii/spec-1.42.0" - sources."@types/node-12.20.36" + sources."@jsii/check-node-1.43.0" + sources."@jsii/spec-1.43.0" + sources."@types/node-12.20.37" sources."@xmldom/xmldom-0.7.5" - sources."ajv-8.6.3" + sources."ajv-8.7.1" sources."ansi-regex-5.0.1" sources."ansi-styles-4.3.0" sources."at-least-node-1.0.0" @@ -76588,12 +79877,12 @@ in sources."call-bind-1.0.2" sources."camelcase-6.2.0" sources."case-1.6.3" - sources."cdk8s-1.1.21" - sources."cdk8s-plus-22-1.0.0-beta.28" + sources."cdk8s-1.1.31" + sources."cdk8s-plus-22-1.0.0-beta.38" sources."chalk-4.1.2" sources."cliui-7.0.4" sources."clone-2.1.2" - (sources."codemaker-1.42.0" // { + (sources."codemaker-1.43.0" // { dependencies = [ sources."fs-extra-9.1.0" ]; @@ -76658,38 +79947,38 @@ in sources."is-weakref-1.0.1" sources."is-weakset-2.0.1" sources."isarray-2.0.5" - (sources."jsii-1.42.0" // { + (sources."jsii-1.43.0" // { dependencies = [ sources."fs-extra-9.1.0" sources."yargs-16.2.0" ]; }) - (sources."jsii-pacmak-1.42.0" // { + (sources."jsii-pacmak-1.43.0" // { dependencies = [ sources."fs-extra-9.1.0" sources."yargs-16.2.0" ]; }) - (sources."jsii-reflect-1.42.0" // { + (sources."jsii-reflect-1.43.0" // { dependencies = [ sources."fs-extra-9.1.0" sources."yargs-16.2.0" ]; }) - (sources."jsii-rosetta-1.42.0" // { + (sources."jsii-rosetta-1.43.0" // { dependencies = [ sources."fs-extra-9.1.0" sources."yargs-16.2.0" ]; }) - (sources."jsii-srcmak-0.1.386" // { + (sources."jsii-srcmak-0.1.396" // { dependencies = [ sources."fs-extra-9.1.0" ]; }) - sources."json-schema-0.3.0" + sources."json-schema-0.4.0" sources."json-schema-traverse-1.0.0" - sources."json2jsii-0.2.40" + sources."json2jsii-0.2.49" sources."jsonfile-6.1.0" sources."jsonschema-1.4.0" sources."locate-path-5.0.0" @@ -76705,7 +79994,7 @@ in sources."object-is-1.1.5" sources."object-keys-1.1.1" sources."object.assign-4.1.2" - sources."oo-ascii-tree-1.42.0" + sources."oo-ascii-tree-1.43.0" sources."p-limit-2.3.0" sources."p-locate-4.1.0" sources."p-try-2.2.0" @@ -76727,7 +80016,7 @@ in sources."snake-case-3.0.4" sources."sort-json-2.0.0" sources."spdx-license-list-6.4.0" - sources."sscaff-1.2.115" + sources."sscaff-1.2.125" (sources."streamroller-2.2.4" // { dependencies = [ sources."date-format-2.1.0" @@ -76784,7 +80073,7 @@ in sha512 = "N0U5YgquMYZTqfO+SSIdP6K/EAnFqS5gHj8eISvP2ZjrphfSFM7hs4VO0bVvzNoMe/ByBbUtQMHXCs5r1XdB9Q=="; }; dependencies = [ - sources."@apollo/client-3.4.16" + sources."@apollo/client-3.5.2" (sources."@apollo/protobufjs-1.2.2" // { dependencies = [ sources."@types/node-10.17.60" @@ -76805,7 +80094,7 @@ in sources."chalk-2.4.2" ]; }) - sources."@babel/parser-7.16.2" + sources."@babel/parser-7.16.3" sources."@babel/template-7.16.0" sources."@babel/types-7.16.0" sources."@cdktf/hcl2cdk-0.7.0" @@ -76816,9 +80105,9 @@ in sources."tslib-2.1.0" ]; }) - (sources."@graphql-tools/import-6.5.8" // { + (sources."@graphql-tools/import-6.6.1" // { dependencies = [ - sources."@graphql-tools/utils-8.5.2" + sources."@graphql-tools/utils-8.5.3" ]; }) (sources."@graphql-tools/load-6.2.8" // { @@ -76831,15 +80120,15 @@ in sources."@graphql-tools/utils-8.0.2" ]; }) - (sources."@graphql-tools/mock-8.4.2" // { + (sources."@graphql-tools/mock-8.4.3" // { dependencies = [ - sources."@graphql-tools/utils-8.5.2" + sources."@graphql-tools/utils-8.5.3" ]; }) (sources."@graphql-tools/schema-8.3.1" // { dependencies = [ sources."@graphql-tools/merge-8.2.1" - sources."@graphql-tools/utils-8.5.2" + sources."@graphql-tools/utils-8.5.3" ]; }) (sources."@graphql-tools/utils-7.10.0" // { @@ -76849,8 +80138,8 @@ in }) sources."@graphql-typed-document-node/core-3.1.0" sources."@josephg/resolvable-1.0.1" - sources."@jsii/check-node-1.42.0" - sources."@jsii/spec-1.42.0" + sources."@jsii/check-node-1.43.0" + sources."@jsii/spec-1.43.0" sources."@nodelib/fs.scandir-2.1.5" sources."@nodelib/fs.stat-2.0.5" sources."@nodelib/fs.walk-1.2.8" @@ -76890,14 +80179,13 @@ in sources."@types/express-serve-static-core-4.17.24" sources."@types/long-4.0.1" sources."@types/mime-1.3.2" - sources."@types/node-14.17.32" + sources."@types/node-14.17.33" sources."@types/node-fetch-2.5.12" sources."@types/qs-6.9.7" sources."@types/range-parser-1.2.4" sources."@types/serve-static-1.13.10" sources."@types/yauzl-2.9.2" sources."@types/yoga-layout-1.9.2" - sources."@types/zen-observable-0.8.3" sources."@wry/context-0.6.1" sources."@wry/equality-0.5.2" sources."@wry/trie-0.3.1" @@ -76916,20 +80204,20 @@ in sources."normalize-path-3.0.0" ]; }) - sources."apollo-datasource-3.2.0" - sources."apollo-graphql-0.9.4" - sources."apollo-reporting-protobuf-3.1.0" - sources."apollo-server-caching-3.2.0" - (sources."apollo-server-core-3.4.0" // { + sources."apollo-datasource-3.3.0" + sources."apollo-graphql-0.9.5" + sources."apollo-reporting-protobuf-3.2.0" + sources."apollo-server-caching-3.3.0" + (sources."apollo-server-core-3.5.0" // { dependencies = [ - sources."@graphql-tools/utils-8.5.2" + sources."@graphql-tools/utils-8.5.3" ]; }) - sources."apollo-server-env-4.1.0" - sources."apollo-server-errors-3.2.0" - sources."apollo-server-express-3.4.0" - sources."apollo-server-plugin-base-3.3.0" - sources."apollo-server-types-3.3.0" + sources."apollo-server-env-4.2.0" + sources."apollo-server-errors-3.3.0" + sources."apollo-server-express-3.5.0" + sources."apollo-server-plugin-base-3.4.0" + sources."apollo-server-types-3.4.0" sources."archiver-5.3.0" (sources."archiver-utils-2.1.0" // { dependencies = [ @@ -77118,7 +80406,7 @@ in sources."graphology-types-0.19.5" sources."graphql-15.7.2" sources."graphql-subscriptions-1.2.1" - sources."graphql-tag-2.12.5" + sources."graphql-tag-2.12.6" sources."has-1.0.3" sources."has-bigints-1.0.1" sources."has-flag-3.0.0" @@ -77133,7 +80421,7 @@ in sources."human-signals-2.1.0" sources."iconv-lite-0.4.24" sources."ieee754-1.2.1" - sources."ignore-5.1.8" + sources."ignore-5.1.9" sources."import-from-3.0.0" sources."indent-string-4.0.0" sources."inflight-1.0.6" @@ -77177,7 +80465,7 @@ in sources."is-symbol-1.0.4" sources."is-typed-array-1.1.8" sources."is-unicode-supported-0.1.0" - sources."is-valid-domain-0.1.2" + sources."is-valid-domain-0.1.4" sources."is-weakmap-2.0.1" sources."is-weakref-1.0.1" sources."is-weakset-2.0.1" @@ -77197,19 +80485,19 @@ in (sources."jsii-pacmak-1.37.0" // { dependencies = [ sources."@jsii/check-node-1.37.0" - sources."codemaker-1.42.0" + sources."codemaker-1.43.0" sources."escape-string-regexp-4.0.0" sources."fs-extra-9.1.0" sources."yargs-16.2.0" ]; }) - (sources."jsii-reflect-1.42.0" // { + (sources."jsii-reflect-1.43.0" // { dependencies = [ sources."fs-extra-9.1.0" sources."yargs-16.2.0" ]; }) - (sources."jsii-rosetta-1.42.0" // { + (sources."jsii-rosetta-1.43.0" // { dependencies = [ sources."fs-extra-9.1.0" sources."yargs-16.2.0" @@ -77254,8 +80542,8 @@ in sources."methods-1.1.2" sources."micromatch-4.0.4" sources."mime-1.6.0" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."mimic-fn-2.1.0" sources."minimatch-3.0.4" sources."minimist-1.2.5" @@ -77276,7 +80564,7 @@ in sources."on-finished-2.3.0" sources."once-1.4.0" sources."onetime-5.1.2" - sources."oo-ascii-tree-1.42.0" + sources."oo-ascii-tree-1.43.0" sources."open-7.4.2" sources."optimism-0.16.1" sources."ora-5.4.1" @@ -77369,7 +80657,7 @@ in sources."sort-json-2.0.0" sources."source-map-0.5.7" sources."spdx-license-list-6.4.0" - sources."sscaff-1.2.115" + sources."sscaff-1.2.125" (sources."stack-utils-2.0.5" // { dependencies = [ sources."escape-string-regexp-2.0.0" @@ -77455,7 +80743,7 @@ in sources."yocto-queue-0.1.0" sources."yoga-layout-prebuilt-1.10.0" sources."zen-observable-0.8.15" - sources."zen-observable-ts-1.1.0" + sources."zen-observable-ts-1.2.2" sources."zip-stream-4.1.0" sources."zod-1.11.17" ]; @@ -77789,10 +81077,10 @@ in coc-explorer = nodeEnv.buildNodePackage { name = "coc-explorer"; packageName = "coc-explorer"; - version = "0.20.0"; + version = "0.20.1"; src = fetchurl { - url = "https://registry.npmjs.org/coc-explorer/-/coc-explorer-0.20.0.tgz"; - sha512 = "epA1GHdHMc40jlBjjFjQ+1SNW1Cal99xycQ0e0bF7UQjR6LBDUszjbb++LYyaPaWRKVCKFp0uCuSXaG5iRIjpA=="; + url = "https://registry.npmjs.org/coc-explorer/-/coc-explorer-0.20.1.tgz"; + sha512 = "BCuK5OwUV9mRYN4F8e4TnjWkTcIy7UEsxCST/aoxYoCJ2TKrskDIb82R2EtuD6xmJoz1VEHpugWEG7xHRKDQxg=="; }; dependencies = [ sources."@sindresorhus/df-3.1.1" @@ -77893,10 +81181,10 @@ in coc-go = nodeEnv.buildNodePackage { name = "coc-go"; packageName = "coc-go"; - version = "0.13.3"; + version = "1.0.0"; src = fetchurl { - url = "https://registry.npmjs.org/coc-go/-/coc-go-0.13.3.tgz"; - sha512 = "JxAJD3z10ziO8CxgTUlguZp8uy1r6fo0pP+L4GeXKv+q12BHIxWXoAZdd158vAP/YCh0Yw4zBrij57Fg4wtVdg=="; + url = "https://registry.npmjs.org/coc-go/-/coc-go-1.0.0.tgz"; + sha512 = "KWKf5vius3IZrdPPmnMqiPayeWa9ve/x7N2JHHgwgGY+3WtXSuyfWa4LSL2ZIdiZsSrCDHEhGaAtN7naP8MxiA=="; }; dependencies = [ sources."isexe-2.0.0" @@ -78089,10 +81377,10 @@ in coc-metals = nodeEnv.buildNodePackage { name = "coc-metals"; packageName = "coc-metals"; - version = "1.0.10"; + version = "1.0.11"; src = fetchurl { - url = "https://registry.npmjs.org/coc-metals/-/coc-metals-1.0.10.tgz"; - sha512 = "Hm17BLPzwxy5VE6ekDLyvYdt1xMcAbmGK/YbcHJzhQo4cHahW+HIextEy7KL5EU7uF3SrZYaBo7tH2JH4Tk0Qg=="; + url = "https://registry.npmjs.org/coc-metals/-/coc-metals-1.0.11.tgz"; + sha512 = "6AT89AXRnCUpWukcMOOy8Y4MJ0eO+h61dRtSyK9zXL1Qc7V2Mj42EI/LYohEFXRPPR6EeyaIiYxip7NPkgRvSg=="; }; dependencies = [ sources."@chemzqm/neovim-5.4.0" @@ -78102,7 +81390,7 @@ in sources."async-2.6.3" sources."await-semaphore-0.1.3" sources."balanced-match-1.0.2" - sources."big-integer-1.6.50" + sources."big-integer-1.6.51" sources."binary-0.3.0" sources."bluebird-3.4.7" sources."brace-expansion-1.1.11" @@ -78390,7 +81678,7 @@ in sources."callsites-3.1.0" sources."camelcase-2.1.1" sources."camelcase-keys-2.1.0" - sources."caniuse-lite-1.0.30001274" + sources."caniuse-lite-1.0.30001280" sources."capture-stack-trace-1.0.1" sources."ccount-1.1.0" (sources."chalk-4.1.2" // { @@ -78442,7 +81730,7 @@ in sources."color-convert-1.9.3" sources."color-name-1.1.3" sources."commander-2.20.3" - sources."common-tags-1.8.0" + sources."common-tags-1.8.1" sources."component-emitter-1.3.0" sources."concat-map-0.0.1" (sources."configstore-3.1.5" // { @@ -78488,7 +81776,7 @@ in sources."domutils-1.7.0" sources."dot-prop-5.3.0" sources."duplexer3-0.1.4" - sources."electron-to-chromium-1.3.887" + sources."electron-to-chromium-1.3.895" sources."emoji-regex-8.0.0" sources."end-of-stream-1.4.4" sources."enquirer-2.3.6" @@ -78607,7 +81895,7 @@ in sources."fill-range-2.2.4" sources."find-up-2.1.0" sources."flat-cache-3.0.4" - sources."flatted-3.2.2" + sources."flatted-3.2.4" sources."for-in-1.0.2" sources."for-own-0.1.5" sources."fragment-cache-0.2.1" @@ -78751,7 +82039,6 @@ in }) sources."locate-path-2.0.0" sources."lodash-4.17.21" - sources."lodash.clonedeep-4.5.0" sources."lodash.merge-4.6.2" sources."lodash.truncate-4.4.2" (sources."log-symbols-2.2.0" // { @@ -79153,9 +82440,9 @@ in sources."sugarss-1.0.1" sources."supports-color-5.5.0" sources."svg-tags-1.0.0" - (sources."table-6.7.2" // { + (sources."table-6.7.3" // { dependencies = [ - sources."ajv-8.6.3" + sources."ajv-8.7.1" sources."json-schema-traverse-1.0.0" ]; }) @@ -79287,13 +82574,13 @@ in coc-pyright = nodeEnv.buildNodePackage { name = "coc-pyright"; packageName = "coc-pyright"; - version = "1.1.181"; + version = "1.1.185"; src = fetchurl { - url = "https://registry.npmjs.org/coc-pyright/-/coc-pyright-1.1.181.tgz"; - sha512 = "dtsGJiL/ul+kCNKkQ7cw0ZHJV3bw3sWEu2V2dtoDFDP8yVtIHEXbz5O8ujULwl+FkO3X4Th+Q8ZR02mqDwdapQ=="; + url = "https://registry.npmjs.org/coc-pyright/-/coc-pyright-1.1.185.tgz"; + sha512 = "scmrgeDh1nXAevfgiflyDLIykXJp9q1gi6uHGViO2m7Qu/L0SGTClT3Y7pA46SFXMxeKq/f8lBvUltvPzksWXg=="; }; dependencies = [ - sources."pyright-1.1.184" + sources."pyright-1.1.186" ]; buildInputs = globalBuildInputs; meta = { @@ -79447,7 +82734,7 @@ in sources."@babel/compat-data-7.16.0" sources."@babel/core-7.16.0" sources."@babel/generator-7.16.0" - sources."@babel/helper-compilation-targets-7.16.0" + sources."@babel/helper-compilation-targets-7.16.3" sources."@babel/helper-function-name-7.16.0" sources."@babel/helper-get-function-arity-7.16.0" sources."@babel/helper-hoist-variables-7.16.0" @@ -79460,15 +82747,15 @@ in sources."@babel/helper-split-export-declaration-7.16.0" sources."@babel/helper-validator-identifier-7.15.7" sources."@babel/helper-validator-option-7.14.5" - sources."@babel/helpers-7.16.0" + sources."@babel/helpers-7.16.3" (sources."@babel/highlight-7.16.0" // { dependencies = [ sources."chalk-2.4.2" ]; }) - sources."@babel/parser-7.16.2" + sources."@babel/parser-7.16.3" sources."@babel/template-7.16.0" - sources."@babel/traverse-7.16.0" + sources."@babel/traverse-7.16.3" sources."@babel/types-7.16.0" sources."@nodelib/fs.scandir-2.1.5" sources."@nodelib/fs.stat-2.0.5" @@ -79480,7 +82767,7 @@ in sources."@types/normalize-package-data-2.4.1" sources."@types/parse-json-4.0.0" sources."@types/unist-2.0.6" - sources."ajv-8.6.3" + sources."ajv-8.7.1" sources."ansi-regex-5.0.1" sources."ansi-styles-3.2.1" sources."array-union-2.1.0" @@ -79503,7 +82790,7 @@ in sources."callsites-3.1.0" sources."camelcase-5.3.1" sources."camelcase-keys-6.2.2" - sources."caniuse-lite-1.0.30001274" + sources."caniuse-lite-1.0.30001280" (sources."chalk-4.1.2" // { dependencies = [ sources."ansi-styles-4.3.0" @@ -79540,7 +82827,7 @@ in sources."domelementtype-1.3.1" sources."domhandler-2.4.2" sources."domutils-1.7.0" - sources."electron-to-chromium-1.3.887" + sources."electron-to-chromium-1.3.895" sources."emoji-regex-8.0.0" sources."entities-1.1.2" sources."error-ex-1.3.2" @@ -79557,7 +82844,7 @@ in sources."fill-range-7.0.1" sources."find-up-4.1.0" sources."flat-cache-3.0.4" - sources."flatted-3.2.2" + sources."flatted-3.2.4" sources."fs.realpath-1.0.0" sources."function-bind-1.1.1" sources."gensync-1.0.0-beta.2" @@ -79576,7 +82863,7 @@ in sources."hosted-git-info-4.0.2" sources."html-tags-3.1.0" sources."htmlparser2-3.10.1" - sources."ignore-5.1.8" + sources."ignore-5.1.9" (sources."import-fresh-3.3.0" // { dependencies = [ sources."resolve-from-4.0.0" @@ -79614,7 +82901,6 @@ in sources."lines-and-columns-1.1.6" sources."locate-path-5.0.0" sources."lodash-4.17.21" - sources."lodash.clonedeep-4.5.0" sources."lodash.truncate-4.4.2" sources."log-symbols-4.1.0" sources."longest-streak-2.0.4" @@ -79734,7 +83020,7 @@ in sources."sugarss-2.0.0" sources."supports-color-5.5.0" sources."svg-tags-1.0.0" - sources."table-6.7.2" + sources."table-6.7.3" sources."to-fast-properties-2.0.0" sources."to-regex-range-5.0.1" sources."trim-newlines-3.0.1" @@ -80019,7 +83305,7 @@ in sources."fast-levenshtein-2.0.6" sources."file-entry-cache-6.0.1" sources."flat-cache-3.0.4" - sources."flatted-3.2.2" + sources."flatted-3.2.4" sources."fs.realpath-1.0.0" sources."function-bind-1.1.1" sources."functional-red-black-tree-1.0.1" @@ -80049,7 +83335,6 @@ in sources."json-stable-stringify-without-jsonify-1.0.1" sources."levn-0.4.1" sources."lodash-4.17.21" - sources."lodash.clonedeep-4.5.0" sources."lodash.merge-4.6.2" sources."lodash.truncate-4.4.2" sources."lru-cache-6.0.0" @@ -80091,9 +83376,9 @@ in sources."strip-ansi-6.0.1" sources."strip-json-comments-3.1.1" sources."supports-color-5.5.0" - (sources."table-6.7.2" // { + (sources."table-6.7.3" // { dependencies = [ - sources."ajv-8.6.3" + sources."ajv-8.7.1" sources."json-schema-traverse-1.0.0" ]; }) @@ -80496,6 +83781,55 @@ in bypassCache = true; reconstructLock = true; }; + concurrently = nodeEnv.buildNodePackage { + name = "concurrently"; + packageName = "concurrently"; + version = "6.3.0"; + src = fetchurl { + url = "https://registry.npmjs.org/concurrently/-/concurrently-6.3.0.tgz"; + sha512 = "k4k1jQGHHKsfbqzkUszVf29qECBrkvBKkcPJEUDTyVR7tZd1G/JOfnst4g1sYbFvJ4UjHZisj1aWQR8yLKpGPw=="; + }; + dependencies = [ + sources."ansi-regex-5.0.1" + sources."ansi-styles-4.3.0" + (sources."chalk-4.1.2" // { + dependencies = [ + sources."supports-color-7.2.0" + ]; + }) + sources."cliui-7.0.4" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + sources."date-fns-2.25.0" + sources."emoji-regex-8.0.0" + sources."escalade-3.1.1" + sources."get-caller-file-2.0.5" + sources."has-flag-4.0.0" + sources."is-fullwidth-code-point-3.0.0" + sources."lodash-4.17.21" + sources."require-directory-2.1.1" + sources."rxjs-6.6.7" + sources."spawn-command-0.0.2" + sources."string-width-4.2.3" + sources."strip-ansi-6.0.1" + sources."supports-color-8.1.1" + sources."tree-kill-1.2.2" + sources."tslib-1.14.1" + sources."wrap-ansi-7.0.0" + sources."y18n-5.0.8" + sources."yargs-16.2.0" + sources."yargs-parser-20.2.9" + ]; + buildInputs = globalBuildInputs; + meta = { + description = "Run commands concurrently"; + homepage = "https://github.com/open-cli-tools/concurrently#readme"; + license = "MIT"; + }; + production = true; + bypassCache = true; + reconstructLock = true; + }; configurable-http-proxy = nodeEnv.buildNodePackage { name = "configurable-http-proxy"; packageName = "configurable-http-proxy"; @@ -80826,7 +84160,7 @@ in sources."array-find-index-1.0.2" sources."array-flatten-1.1.1" sources."array-union-2.1.0" - sources."asn1-0.2.4" + sources."asn1-0.2.6" sources."assert-plus-1.0.0" sources."async-2.6.3" sources."asynckit-0.4.0" @@ -80836,7 +84170,7 @@ in sources."balanced-match-1.0.2" sources."base64-js-1.5.1" sources."bcrypt-pbkdf-1.0.2" - sources."big-integer-1.6.50" + sources."big-integer-1.6.51" (sources."body-parser-1.19.0" // { dependencies = [ sources."bytes-3.1.0" @@ -81028,7 +84362,7 @@ in sources."human-signals-1.1.1" sources."humanize-ms-1.2.1" sources."iconv-lite-0.6.3" - sources."ignore-5.1.8" + sources."ignore-5.1.9" sources."ignore-walk-3.0.4" sources."import-fresh-3.3.0" sources."import-lazy-2.1.0" @@ -81138,8 +84472,8 @@ in sources."methods-1.1.2" sources."micromatch-4.0.4" sources."mime-1.6.0" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."mimic-fn-2.1.0" sources."mimic-response-1.0.1" sources."minimatch-3.0.4" @@ -81405,7 +84739,7 @@ in sources."@types/glob-7.2.0" sources."@types/minimatch-3.0.5" sources."@types/minimist-1.2.2" - sources."@types/node-16.11.6" + sources."@types/node-16.11.7" sources."@types/normalize-package-data-2.4.1" sources."aggregate-error-3.1.0" sources."ansi-styles-3.2.1" @@ -81776,7 +85110,7 @@ in sources."@cycle/run-3.4.0" sources."@cycle/time-0.10.1" sources."@types/cookiejar-2.1.2" - sources."@types/node-16.11.6" + sources."@types/node-16.11.7" sources."@types/superagent-3.8.2" sources."ansi-escapes-3.2.0" sources."ansi-regex-2.1.1" @@ -81857,8 +85191,8 @@ in sources."lru-cache-4.1.5" sources."methods-1.1.2" sources."mime-1.6.0" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."mimic-fn-1.2.0" sources."minimist-1.2.5" sources."ms-2.1.3" @@ -82040,6 +85374,169 @@ in bypassCache = true; reconstructLock = true; }; + cspell = nodeEnv.buildNodePackage { + name = "cspell"; + packageName = "cspell"; + version = "5.12.6"; + src = fetchurl { + url = "https://registry.npmjs.org/cspell/-/cspell-5.12.6.tgz"; + sha512 = "Dz8zqK43AXd8NZh7tdJd8tekWkkUp9Me6oCSWOGE3AqawSHlqk1cTu52wGXMkJ0z6IXmzXzX722VsL0wLEEvRg=="; + }; + dependencies = [ + sources."@babel/code-frame-7.16.0" + sources."@babel/helper-validator-identifier-7.15.7" + (sources."@babel/highlight-7.16.0" // { + dependencies = [ + sources."ansi-styles-3.2.1" + sources."chalk-2.4.2" + sources."color-convert-1.9.3" + sources."color-name-1.1.3" + sources."has-flag-3.0.0" + sources."supports-color-5.5.0" + ]; + }) + sources."@cspell/cspell-bundled-dicts-5.12.6" + sources."@cspell/cspell-types-5.12.6" + sources."@cspell/dict-ada-1.1.2" + sources."@cspell/dict-aws-1.0.14" + sources."@cspell/dict-bash-1.0.16" + sources."@cspell/dict-companies-2.0.2" + sources."@cspell/dict-cpp-1.1.40" + sources."@cspell/dict-cryptocurrencies-1.0.10" + sources."@cspell/dict-csharp-2.0.1" + sources."@cspell/dict-css-1.0.12" + sources."@cspell/dict-django-1.0.26" + sources."@cspell/dict-dotnet-1.0.32" + sources."@cspell/dict-elixir-1.0.26" + sources."@cspell/dict-en-gb-1.1.33" + sources."@cspell/dict-en_us-2.1.3" + sources."@cspell/dict-filetypes-2.0.1" + sources."@cspell/dict-fonts-1.0.14" + sources."@cspell/dict-fullstack-2.0.4" + sources."@cspell/dict-golang-1.1.24" + sources."@cspell/dict-haskell-1.0.13" + sources."@cspell/dict-html-1.1.9" + sources."@cspell/dict-html-symbol-entities-1.0.23" + sources."@cspell/dict-java-1.0.23" + sources."@cspell/dict-latex-1.0.25" + sources."@cspell/dict-lorem-ipsum-1.0.22" + sources."@cspell/dict-lua-1.0.16" + sources."@cspell/dict-node-1.0.12" + sources."@cspell/dict-npm-1.0.16" + sources."@cspell/dict-php-1.0.25" + sources."@cspell/dict-powershell-1.0.19" + sources."@cspell/dict-public-licenses-1.0.3" + sources."@cspell/dict-python-2.0.4" + sources."@cspell/dict-ruby-1.0.14" + sources."@cspell/dict-rust-1.0.23" + sources."@cspell/dict-scala-1.0.21" + sources."@cspell/dict-software-terms-2.0.9" + sources."@cspell/dict-swift-1.0.1" + sources."@cspell/dict-typescript-1.0.19" + sources."@cspell/dict-vue-2.0.1" + sources."@types/parse-json-4.0.0" + sources."ansi-regex-5.0.1" + sources."ansi-styles-4.3.0" + sources."array-timsort-1.0.3" + sources."balanced-match-1.0.2" + sources."brace-expansion-1.1.11" + sources."braces-3.0.2" + sources."callsites-3.1.0" + sources."chalk-4.1.2" + sources."clear-module-4.1.2" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + sources."commander-8.3.0" + sources."comment-json-4.1.1" + sources."concat-map-0.0.1" + sources."configstore-5.0.1" + sources."core-util-is-1.0.3" + sources."cosmiconfig-7.0.1" + sources."crypto-random-string-2.0.0" + sources."cspell-gitignore-5.12.6" + sources."cspell-glob-5.12.6" + sources."cspell-io-5.12.6" + sources."cspell-lib-5.12.6" + sources."cspell-trie-lib-5.12.6" + sources."dot-prop-5.3.0" + sources."error-ex-1.3.2" + sources."escape-string-regexp-1.0.5" + sources."esprima-4.0.1" + sources."fast-json-stable-stringify-2.1.0" + sources."file-entry-cache-6.0.1" + sources."fill-range-7.0.1" + sources."find-up-5.0.0" + sources."flat-cache-3.0.4" + sources."flatted-3.2.4" + sources."fs-extra-10.0.0" + sources."fs.realpath-1.0.0" + sources."gensequence-3.1.1" + sources."get-stdin-8.0.0" + sources."glob-7.2.0" + sources."global-dirs-0.1.1" + sources."graceful-fs-4.2.8" + sources."has-flag-4.0.0" + sources."has-own-prop-2.0.0" + (sources."import-fresh-3.3.0" // { + dependencies = [ + sources."parent-module-1.0.1" + sources."resolve-from-4.0.0" + ]; + }) + sources."imurmurhash-0.1.4" + sources."inflight-1.0.6" + sources."inherits-2.0.4" + sources."ini-1.3.8" + sources."is-arrayish-0.2.1" + sources."is-number-7.0.0" + sources."is-obj-2.0.0" + sources."is-typedarray-1.0.0" + sources."js-tokens-4.0.0" + sources."json-parse-even-better-errors-2.3.1" + sources."jsonfile-6.1.0" + sources."lines-and-columns-1.1.6" + sources."locate-path-6.0.0" + sources."make-dir-3.1.0" + sources."micromatch-4.0.4" + sources."minimatch-3.0.4" + sources."once-1.4.0" + sources."p-limit-3.1.0" + sources."p-locate-5.0.0" + sources."parent-module-2.0.0" + sources."parse-json-5.2.0" + sources."path-exists-4.0.0" + sources."path-is-absolute-1.0.1" + sources."path-type-4.0.0" + sources."picomatch-2.3.0" + sources."repeat-string-1.6.1" + sources."resolve-from-5.0.0" + sources."resolve-global-1.0.0" + sources."rimraf-3.0.2" + sources."semver-6.3.0" + sources."signal-exit-3.0.5" + sources."strip-ansi-6.0.1" + sources."supports-color-7.2.0" + sources."to-regex-range-5.0.1" + sources."typedarray-to-buffer-3.1.5" + sources."unique-string-2.0.0" + sources."universalify-2.0.0" + sources."vscode-uri-3.0.2" + sources."wrappy-1.0.2" + sources."write-file-atomic-3.0.3" + sources."xdg-basedir-4.0.0" + sources."yaml-1.10.2" + sources."yocto-queue-0.1.0" + ]; + buildInputs = globalBuildInputs; + meta = { + description = "A Spelling Checker for Code!"; + homepage = "https://streetsidesoftware.github.io/cspell/"; + license = "MIT"; + }; + production = true; + bypassCache = true; + reconstructLock = true; + }; csslint = nodeEnv.buildNodePackage { name = "csslint"; packageName = "csslint"; @@ -82092,7 +85589,7 @@ in sources."arr-union-3.1.0" sources."array-lru-1.1.1" sources."array-unique-0.3.2" - sources."asn1-0.2.4" + sources."asn1-0.2.6" sources."assert-plus-1.0.0" sources."assign-symbols-1.0.0" sources."async-0.9.2" @@ -82101,6 +85598,7 @@ in sources."atomic-batcher-1.0.2" sources."aws-sign2-0.7.0" sources."aws4-1.11.0" + sources."b4a-1.1.2" sources."balanced-match-1.0.2" (sources."base-0.11.2" // { dependencies = [ @@ -82412,8 +85910,8 @@ in sources."merkle-tree-stream-3.0.3" sources."micromatch-3.1.10" sources."mime-2.6.0" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."mimic-response-2.1.0" sources."min-document-2.19.0" sources."minimatch-3.0.4" @@ -82497,9 +85995,10 @@ in sources."pump-3.0.0" sources."punycode-2.1.1" sources."qs-6.5.2" + sources."queue-tick-1.0.0" sources."random-access-file-2.2.0" - sources."random-access-memory-3.1.2" - sources."random-access-storage-1.4.1" + sources."random-access-memory-3.1.3" + sources."random-access-storage-1.4.2" sources."randombytes-2.1.0" sources."range-parser-1.2.1" sources."rc-1.2.8" @@ -82767,7 +86266,7 @@ in }) sources."@babel/helper-annotate-as-pure-7.16.0" sources."@babel/helper-builder-binary-assignment-operator-visitor-7.16.0" - sources."@babel/helper-compilation-targets-7.16.0" + sources."@babel/helper-compilation-targets-7.16.3" sources."@babel/helper-create-class-features-plugin-7.16.0" sources."@babel/helper-create-regexp-features-plugin-7.16.0" sources."@babel/helper-define-polyfill-provider-0.2.4" @@ -82788,9 +86287,9 @@ in sources."@babel/helper-validator-identifier-7.15.7" sources."@babel/helper-validator-option-7.14.5" sources."@babel/helper-wrap-function-7.16.0" - sources."@babel/helpers-7.16.0" + sources."@babel/helpers-7.16.3" sources."@babel/highlight-7.16.0" - sources."@babel/parser-7.16.2" + sources."@babel/parser-7.16.3" sources."@babel/plugin-bugfix-safari-id-destructuring-collision-in-function-expression-7.16.2" sources."@babel/plugin-bugfix-v8-spread-parameters-in-optional-chaining-7.16.0" sources."@babel/plugin-proposal-async-generator-functions-7.16.0" @@ -82844,7 +86343,7 @@ in sources."@babel/plugin-transform-named-capturing-groups-regex-7.16.0" sources."@babel/plugin-transform-new-target-7.16.0" sources."@babel/plugin-transform-object-super-7.16.0" - sources."@babel/plugin-transform-parameters-7.16.0" + sources."@babel/plugin-transform-parameters-7.16.3" sources."@babel/plugin-transform-property-literals-7.16.0" sources."@babel/plugin-transform-react-display-name-7.16.0" sources."@babel/plugin-transform-react-jsx-7.16.0" @@ -82862,11 +86361,11 @@ in sources."@babel/preset-env-7.16.0" sources."@babel/preset-modules-0.1.5" sources."@babel/preset-react-7.16.0" - sources."@babel/runtime-7.16.0" + sources."@babel/runtime-7.16.3" sources."@babel/template-7.16.0" - sources."@babel/traverse-7.16.0" + sources."@babel/traverse-7.16.3" sources."@babel/types-7.16.0" - sources."@blueprintjs/colors-4.0.0-beta.1" + sources."@blueprintjs/colors-4.0.0-beta.2" sources."@blueprintjs/core-3.51.3" sources."@blueprintjs/icons-3.31.0" sources."@electron/get-1.13.1" @@ -82892,7 +86391,7 @@ in sources."@types/geojson-7946.0.8" sources."@types/mapbox-gl-0.54.5" sources."@types/mime-types-2.1.1" - sources."@types/node-14.17.32" + sources."@types/node-14.17.33" sources."@types/node-fetch-2.5.12" sources."@types/prop-types-15.7.4" sources."@types/rc-1.2.0" @@ -82949,7 +86448,7 @@ in ]; }) sources."call-bind-1.0.2" - sources."caniuse-lite-1.0.30001274" + sources."caniuse-lite-1.0.30001280" sources."chalk-2.4.2" sources."chokidar-2.1.8" (sources."class-utils-0.3.6" // { @@ -83016,7 +86515,7 @@ in sources."duplexer3-0.1.4" sources."earcut-2.2.3" sources."electron-13.6.1" - sources."electron-to-chromium-1.3.887" + sources."electron-to-chromium-1.3.895" sources."emoji-js-clean-4.0.0" sources."emoji-mart-3.0.1" sources."emoji-regex-9.2.2" @@ -83177,8 +86676,8 @@ in }) sources."memoize-one-5.2.1" sources."micromatch-3.1.10" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."mimic-response-1.0.1" sources."minimist-1.2.5" (sources."mixin-deep-1.3.2" // { @@ -83502,7 +87001,7 @@ in sources."glob-parent-5.1.2" sources."globby-11.0.4" sources."graceful-fs-4.2.8" - sources."ignore-5.1.8" + sources."ignore-5.1.9" sources."indent-string-4.0.0" sources."inflight-1.0.6" sources."inherits-2.0.4" @@ -83591,18 +87090,18 @@ in elasticdump = nodeEnv.buildNodePackage { name = "elasticdump"; packageName = "elasticdump"; - version = "6.75.0"; + version = "6.76.0"; src = fetchurl { - url = "https://registry.npmjs.org/elasticdump/-/elasticdump-6.75.0.tgz"; - sha512 = "rtsvE6YecxETO/Nx5YQnFX9CtyLUIcDeWd7Xn/v/6I4cnaBYEuYPdvKsHE9cQKpVrQdinmgRk1JlciLNHvjRVg=="; + url = "https://registry.npmjs.org/elasticdump/-/elasticdump-6.76.0.tgz"; + sha512 = "U9hs4hm0UzpfjHV1+SKxdH01dVxRByfkffRvnDNMIt84v94eZXhctjywAO3kqRHpq30oCXY6N6/+kKd/QM9G9A=="; }; dependencies = [ sources."@fast-csv/format-4.3.5" sources."@fast-csv/parse-4.3.6" - sources."@types/node-14.17.32" + sources."@types/node-14.17.33" sources."JSONStream-1.3.5" sources."ajv-6.12.6" - sources."asn1-0.2.4" + sources."asn1-0.2.6" sources."assert-plus-1.0.0" sources."async-2.6.3" sources."asynckit-0.4.0" @@ -83666,8 +87165,8 @@ in sources."lodash.uniq-4.5.0" sources."lossless-json-1.0.5" sources."method-missing-1.2.4" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."minimist-1.2.5" sources."oauth-sign-0.9.0" sources."p-finally-1.0.0" @@ -83802,7 +87301,7 @@ in sources."@types/http-cache-semantics-4.0.1" sources."@types/keyv-3.1.3" sources."@types/minimatch-3.0.5" - sources."@types/node-16.11.6" + sources."@types/node-16.11.7" sources."@types/responselike-1.0.0" sources."@types/yauzl-2.9.2" sources."abbrev-1.1.1" @@ -83831,7 +87330,7 @@ in sources."commander-5.1.0" ]; }) - sources."asn1-0.2.4" + sources."asn1-0.2.6" sources."assert-plus-1.0.0" sources."asynckit-0.4.0" sources."at-least-node-1.0.0" @@ -83934,7 +87433,7 @@ in sources."fs-extra-9.1.0" ]; }) - sources."electron-rebuild-3.2.3" + sources."electron-rebuild-3.2.5" sources."emoji-regex-8.0.0" sources."encodeurl-1.0.2" sources."encoding-0.1.13" @@ -84121,8 +87620,8 @@ in }) sources."merge2-1.4.1" sources."micromatch-4.0.4" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."mimic-fn-2.1.0" sources."mimic-response-1.0.1" sources."minimatch-3.0.4" @@ -84139,15 +87638,11 @@ in sources."mute-stream-0.0.8" sources."negotiator-0.6.2" sources."nice-try-1.0.5" - (sources."node-abi-2.30.1" // { - dependencies = [ - sources."semver-5.7.1" - ]; - }) + sources."node-abi-3.3.0" sources."node-addon-api-3.2.1" sources."node-api-version-0.1.4" sources."node-fetch-2.6.6" - sources."node-gyp-8.3.0" + sources."node-gyp-8.4.0" sources."node-gyp-build-4.3.0" sources."nopt-5.0.0" (sources."normalize-package-data-2.5.0" // { @@ -84415,7 +87910,7 @@ in }) sources."@babel/generator-7.16.0" sources."@babel/helper-annotate-as-pure-7.16.0" - (sources."@babel/helper-compilation-targets-7.16.0" // { + (sources."@babel/helper-compilation-targets-7.16.3" // { dependencies = [ sources."semver-6.3.0" ]; @@ -84433,17 +87928,17 @@ in sources."@babel/helper-split-export-declaration-7.16.0" sources."@babel/helper-validator-identifier-7.15.7" sources."@babel/helper-validator-option-7.14.5" - sources."@babel/helpers-7.16.0" + sources."@babel/helpers-7.16.3" sources."@babel/highlight-7.16.0" - sources."@babel/parser-7.16.2" + sources."@babel/parser-7.16.3" sources."@babel/plugin-proposal-object-rest-spread-7.16.0" sources."@babel/plugin-syntax-jsx-7.16.0" sources."@babel/plugin-syntax-object-rest-spread-7.8.3" sources."@babel/plugin-transform-destructuring-7.16.0" - sources."@babel/plugin-transform-parameters-7.16.0" + sources."@babel/plugin-transform-parameters-7.16.3" sources."@babel/plugin-transform-react-jsx-7.16.0" sources."@babel/template-7.16.0" - sources."@babel/traverse-7.16.0" + sources."@babel/traverse-7.16.3" sources."@babel/types-7.16.0" sources."@types/minimist-1.2.2" sources."@types/normalize-package-data-2.4.1" @@ -84469,7 +87964,7 @@ in sources."callsites-2.0.0" sources."camelcase-5.3.1" sources."camelcase-keys-6.2.2" - sources."caniuse-lite-1.0.30001274" + sources."caniuse-lite-1.0.30001280" sources."chalk-2.4.2" sources."ci-info-2.0.0" sources."cli-boxes-2.2.1" @@ -84498,7 +87993,7 @@ in ]; }) sources."dot-prop-5.3.0" - sources."electron-to-chromium-1.3.887" + sources."electron-to-chromium-1.3.895" sources."emoji-regex-8.0.0" sources."emojilib-2.4.0" sources."end-of-stream-1.4.4" @@ -84742,7 +88237,7 @@ in sources."@fluentui/date-time-utilities-7.9.1" sources."@fluentui/dom-utilities-1.1.2" sources."@fluentui/keyboard-key-0.2.17" - sources."@fluentui/react-7.178.1" + sources."@fluentui/react-7.179.2" sources."@fluentui/react-focus-7.18.1" sources."@fluentui/react-window-provider-1.0.2" sources."@fluentui/theme-1.7.4" @@ -84757,7 +88252,7 @@ in sources."normalize-path-2.1.1" ]; }) - sources."@microsoft/load-themed-styles-1.10.228" + sources."@microsoft/load-themed-styles-1.10.230" sources."@nodelib/fs.scandir-2.1.5" sources."@nodelib/fs.stat-2.0.5" sources."@nodelib/fs.walk-1.2.8" @@ -84776,7 +88271,7 @@ in sources."@types/connect-3.4.35" sources."@types/engine.io-3.1.7" sources."@types/express-4.17.8" - sources."@types/express-serve-static-core-4.17.24" + sources."@types/express-serve-static-core-4.17.25" sources."@types/fancy-log-1.3.0" sources."@types/glob-7.2.0" sources."@types/hls.js-0.13.1" @@ -84911,7 +88406,7 @@ in sources."array-union-2.1.0" sources."array-unique-0.3.2" sources."arraybuffer.slice-0.0.7" - sources."asn1-0.2.4" + sources."asn1-0.2.6" (sources."asn1.js-5.4.1" // { dependencies = [ sources."bn.js-4.12.0" @@ -85469,7 +88964,7 @@ in sources."iconv-lite-0.4.24" sources."ieee754-1.2.1" sources."iferr-0.1.5" - sources."ignore-5.1.8" + sources."ignore-5.1.9" sources."ignore-walk-3.0.4" sources."imurmurhash-0.1.4" sources."indent-string-4.0.0" @@ -85619,8 +89114,8 @@ in ]; }) sources."mime-1.6.0" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."mimic-fn-1.2.0" sources."mimic-response-1.0.1" sources."minimalistic-assert-1.0.1" @@ -85785,7 +89280,7 @@ in sources."object.map-1.0.1" sources."object.pick-1.3.0" sources."object.reduce-1.0.1" - sources."office-ui-fabric-react-7.178.1" + sources."office-ui-fabric-react-7.179.2" sources."on-finished-2.3.0" sources."on-headers-1.0.2" sources."once-1.4.0" @@ -86433,17 +89928,13 @@ in eslint = nodeEnv.buildNodePackage { name = "eslint"; packageName = "eslint"; - version = "8.1.0"; + version = "8.2.0"; src = fetchurl { - url = "https://registry.npmjs.org/eslint/-/eslint-8.1.0.tgz"; - sha512 = "JZvNneArGSUsluHWJ8g8MMs3CfIEzwaLx9KyH4tZ2i+R2/rPWzL8c0zg3rHdwYVpN/1sB9gqnjHwz9HoeJpGHw=="; + url = "https://registry.npmjs.org/eslint/-/eslint-8.2.0.tgz"; + sha512 = "erw7XmM+CLxTOickrimJ1SiF55jiNlVSp2qqm0NuBWPtHYQCegD5ZMaW0c3i5ytPqL+SSLaCxdvQXFPLJn+ABw=="; }; dependencies = [ - (sources."@eslint/eslintrc-1.0.3" // { - dependencies = [ - sources."js-yaml-3.14.1" - ]; - }) + sources."@eslint/eslintrc-1.0.4" sources."@humanwhocodes/config-array-0.6.0" sources."@humanwhocodes/object-schema-1.2.1" sources."acorn-8.5.0" @@ -86452,7 +89943,7 @@ in sources."ansi-colors-4.1.1" sources."ansi-regex-5.0.1" sources."ansi-styles-4.3.0" - sources."argparse-1.0.10" + sources."argparse-2.0.1" sources."balanced-match-1.0.2" sources."brace-expansion-1.1.11" sources."callsites-3.1.0" @@ -86472,9 +89963,8 @@ in sources."eslint-visitor-keys-2.1.0" ]; }) - sources."eslint-visitor-keys-3.0.0" + sources."eslint-visitor-keys-3.1.0" sources."espree-9.0.0" - sources."esprima-4.0.1" sources."esquery-1.4.0" sources."esrecurse-4.3.0" sources."estraverse-5.3.0" @@ -86484,7 +89974,7 @@ in sources."fast-levenshtein-2.0.6" sources."file-entry-cache-6.0.1" sources."flat-cache-3.0.4" - sources."flatted-3.2.2" + sources."flatted-3.2.4" sources."fs.realpath-1.0.0" sources."functional-red-black-tree-1.0.1" sources."glob-7.2.0" @@ -86499,11 +89989,7 @@ in sources."is-extglob-2.1.1" sources."is-glob-4.0.3" sources."isexe-2.0.0" - (sources."js-yaml-4.1.0" // { - dependencies = [ - sources."argparse-2.0.1" - ]; - }) + sources."js-yaml-4.1.0" sources."json-schema-traverse-0.4.1" sources."json-stable-stringify-without-jsonify-1.0.1" sources."levn-0.4.1" @@ -86526,7 +90012,6 @@ in sources."semver-7.3.5" sources."shebang-command-2.0.0" sources."shebang-regex-3.0.0" - sources."sprintf-js-1.0.3" sources."strip-ansi-6.0.1" sources."strip-json-comments-3.1.1" sources."supports-color-7.2.0" @@ -86633,7 +90118,7 @@ in sources."fast-levenshtein-2.0.6" sources."file-entry-cache-6.0.1" sources."flat-cache-3.0.4" - sources."flatted-3.2.2" + sources."flatted-3.2.4" sources."fs.realpath-1.0.0" sources."functional-red-black-tree-1.0.1" sources."glob-7.2.0" @@ -86654,7 +90139,6 @@ in sources."json-schema-traverse-0.4.1" sources."json-stable-stringify-without-jsonify-1.0.1" sources."levn-0.4.1" - sources."lodash.clonedeep-4.5.0" sources."lodash.merge-4.6.2" sources."lodash.truncate-4.4.2" sources."lru-cache-6.0.0" @@ -86689,9 +90173,9 @@ in sources."strip-ansi-6.0.1" sources."strip-json-comments-3.1.1" sources."supports-color-8.1.1" - (sources."table-6.7.2" // { + (sources."table-6.7.3" // { dependencies = [ - sources."ajv-8.6.3" + sources."ajv-8.7.1" sources."json-schema-traverse-1.0.0" ]; }) @@ -86735,10 +90219,10 @@ in expo-cli = nodeEnv.buildNodePackage { name = "expo-cli"; packageName = "expo-cli"; - version = "4.12.11"; + version = "4.13.0"; src = fetchurl { - url = "https://registry.npmjs.org/expo-cli/-/expo-cli-4.12.11.tgz"; - sha512 = "9ZI1G88LLuqsDJG/n845HhsHxw9U29/rDEfXEDwk90YPXqH1Kqv4h2cWcaADu4SC2wDPuT8VvLR2FeVjIC8Cfg=="; + url = "https://registry.npmjs.org/expo-cli/-/expo-cli-4.13.0.tgz"; + sha512 = "C7dfk2yleC7mdOoo9KzphfYz7F+I881VLb8UVgKCqGokwEyxhceKZCImX3D4zsR7bsKJEyjjEvx1XNIp4LV+Ew=="; }; dependencies = [ sources."@babel/code-frame-7.10.4" @@ -86760,20 +90244,20 @@ in sources."@babel/helper-simple-access-7.16.0" sources."@babel/helper-split-export-declaration-7.16.0" sources."@babel/helper-validator-identifier-7.15.7" - sources."@babel/helpers-7.16.0" + sources."@babel/helpers-7.16.3" (sources."@babel/highlight-7.16.0" // { dependencies = [ sources."chalk-2.4.2" ]; }) - sources."@babel/parser-7.16.2" + sources."@babel/parser-7.16.3" sources."@babel/runtime-7.9.0" (sources."@babel/template-7.16.0" // { dependencies = [ sources."@babel/code-frame-7.16.0" ]; }) - (sources."@babel/traverse-7.16.0" // { + (sources."@babel/traverse-7.16.3" // { dependencies = [ sources."@babel/code-frame-7.16.0" ]; @@ -86781,15 +90265,15 @@ in sources."@babel/types-7.16.0" sources."@expo/apple-utils-0.0.0-alpha.26" sources."@expo/bunyan-4.0.0" - sources."@expo/config-6.0.6" - (sources."@expo/config-plugins-4.0.6" // { + sources."@expo/config-6.0.7" + (sources."@expo/config-plugins-4.0.7" // { dependencies = [ sources."semver-7.3.5" ]; }) sources."@expo/config-types-43.0.1" - sources."@expo/dev-server-0.1.92" - sources."@expo/dev-tools-0.13.127" + sources."@expo/dev-server-0.1.94" + sources."@expo/dev-tools-0.13.129" (sources."@expo/devcert-1.0.0" // { dependencies = [ sources."debug-3.2.7" @@ -86805,7 +90289,7 @@ in ]; }) sources."@expo/json-file-8.2.33" - sources."@expo/metro-config-0.2.7" + sources."@expo/metro-config-0.3.0" sources."@expo/osascript-2.0.30" (sources."@expo/package-manager-0.0.47" // { dependencies = [ @@ -86819,7 +90303,7 @@ in sources."xmlbuilder-14.0.0" ]; }) - sources."@expo/prebuild-config-3.0.6" + sources."@expo/prebuild-config-3.0.7" sources."@expo/results-1.0.0" sources."@expo/rudder-sdk-node-1.1.0" (sources."@expo/schemer-1.3.31" // { @@ -86831,12 +90315,12 @@ in }) sources."@expo/sdk-runtime-versions-1.0.0" sources."@expo/spawn-async-1.5.0" - (sources."@expo/webpack-config-0.16.6" // { + (sources."@expo/webpack-config-0.16.7" // { dependencies = [ sources."is-wsl-2.2.0" ]; }) - (sources."@expo/xcpretty-3.1.4" // { + (sources."@expo/xcpretty-4.0.0" // { dependencies = [ sources."js-yaml-4.1.0" ]; @@ -86901,7 +90385,7 @@ in sources."@types/json-schema-7.0.9" sources."@types/keyv-3.1.3" sources."@types/minimatch-3.0.5" - sources."@types/node-16.11.6" + sources."@types/node-16.11.7" sources."@types/q-1.5.5" sources."@types/responselike-1.0.0" sources."@types/retry-0.12.1" @@ -86990,7 +90474,7 @@ in sources."array-uniq-1.0.3" sources."array-unique-0.3.2" sources."arrify-2.0.1" - sources."asn1-0.2.4" + sources."asn1-0.2.6" (sources."asn1.js-5.4.1" // { dependencies = [ sources."bn.js-4.12.0" @@ -87031,7 +90515,7 @@ in sources."base64url-3.0.1" sources."batch-0.6.1" sources."bcrypt-pbkdf-1.0.2" - sources."big-integer-1.6.50" + sources."big-integer-1.6.51" sources."big.js-5.2.2" sources."binary-extensions-2.2.0" sources."bindings-1.5.0" @@ -87103,7 +90587,7 @@ in }) sources."camelcase-6.2.0" sources."caniuse-api-3.0.0" - sources."caniuse-lite-1.0.30001274" + sources."caniuse-lite-1.0.30001280" sources."caseless-0.12.0" (sources."chalk-4.1.2" // { dependencies = [ @@ -87361,7 +90845,7 @@ in sources."duplexify-3.7.1" sources."ecc-jsbn-0.1.2" sources."ee-first-1.1.1" - sources."electron-to-chromium-1.3.887" + sources."electron-to-chromium-1.3.895" (sources."elliptic-6.5.4" // { dependencies = [ sources."bn.js-4.12.0" @@ -87435,7 +90919,7 @@ in sources."ms-2.0.0" ]; }) - (sources."expo-pwa-0.0.101" // { + (sources."expo-pwa-0.0.102" // { dependencies = [ sources."commander-2.20.0" ]; @@ -87652,7 +91136,7 @@ in sources."icss-utils-4.1.1" sources."ieee754-1.2.1" sources."iferr-0.1.5" - sources."ignore-5.1.8" + sources."ignore-5.1.9" sources."ignore-walk-3.0.4" sources."image-size-1.0.0" sources."immer-8.0.1" @@ -87860,8 +91344,8 @@ in ]; }) sources."mime-2.6.0" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."mimic-fn-1.2.0" sources."mimic-response-1.0.1" (sources."mini-css-extract-plugin-0.5.0" // { @@ -88486,7 +91970,7 @@ in }) sources."sisteransi-1.0.5" sources."slash-3.0.0" - sources."slugify-1.6.1" + sources."slugify-1.6.2" sources."smart-buffer-4.2.0" (sources."snapdragon-0.8.2" // { dependencies = [ @@ -88901,9 +92385,9 @@ in sources."uuid-7.0.3" ]; }) - (sources."xdl-59.2.11" // { + (sources."xdl-59.2.13" // { dependencies = [ - sources."bplist-parser-0.3.0" + sources."bplist-parser-0.3.1" sources."chownr-1.1.4" sources."fs-minipass-1.2.7" sources."minipass-2.9.0" @@ -88969,7 +92453,7 @@ in sources."@babel/core-7.16.0" sources."@babel/generator-7.16.0" sources."@babel/helper-annotate-as-pure-7.16.0" - sources."@babel/helper-compilation-targets-7.16.0" + sources."@babel/helper-compilation-targets-7.16.3" sources."@babel/helper-function-name-7.16.0" sources."@babel/helper-get-function-arity-7.16.0" sources."@babel/helper-hoist-variables-7.16.0" @@ -88983,20 +92467,20 @@ in sources."@babel/helper-split-export-declaration-7.16.0" sources."@babel/helper-validator-identifier-7.15.7" sources."@babel/helper-validator-option-7.14.5" - sources."@babel/helpers-7.16.0" + sources."@babel/helpers-7.16.3" sources."@babel/highlight-7.16.0" - sources."@babel/parser-7.16.2" + sources."@babel/parser-7.16.3" sources."@babel/plugin-proposal-object-rest-spread-7.16.0" sources."@babel/plugin-syntax-jsx-7.16.0" sources."@babel/plugin-syntax-object-rest-spread-7.8.3" sources."@babel/plugin-transform-destructuring-7.16.0" - sources."@babel/plugin-transform-parameters-7.16.0" + sources."@babel/plugin-transform-parameters-7.16.3" sources."@babel/plugin-transform-react-jsx-7.16.0" sources."@babel/template-7.16.0" - sources."@babel/traverse-7.16.0" + sources."@babel/traverse-7.16.3" sources."@babel/types-7.16.0" sources."@types/minimist-1.2.2" - sources."@types/node-16.11.6" + sources."@types/node-16.11.7" sources."@types/normalize-package-data-2.4.1" sources."@types/yauzl-2.9.2" sources."@types/yoga-layout-1.9.2" @@ -89023,7 +92507,7 @@ in sources."callsites-2.0.0" sources."camelcase-5.3.1" sources."camelcase-keys-6.2.2" - sources."caniuse-lite-1.0.30001274" + sources."caniuse-lite-1.0.30001280" sources."chalk-2.4.2" sources."chownr-1.1.4" sources."ci-info-2.0.0" @@ -89047,7 +92531,7 @@ in }) sources."delay-5.0.0" sources."devtools-protocol-0.0.869402" - sources."electron-to-chromium-1.3.887" + sources."electron-to-chromium-1.3.895" sources."emoji-regex-8.0.0" sources."end-of-stream-1.4.4" sources."error-ex-1.3.2" @@ -89236,22 +92720,23 @@ in fauna-shell = nodeEnv.buildNodePackage { name = "fauna-shell"; packageName = "fauna-shell"; - version = "0.12.6"; + version = "0.13.0"; src = fetchurl { - url = "https://registry.npmjs.org/fauna-shell/-/fauna-shell-0.12.6.tgz"; - sha512 = "8EB7YEcbD6jmmK9oYe1R/UR8q3Akb0PrDUbROCZ66LQlBiFKrwGbf1CCZ+RAFZOYyYGmQIEp1QQE0vX6FsZzbg=="; + url = "https://registry.npmjs.org/fauna-shell/-/fauna-shell-0.13.0.tgz"; + sha512 = "v+BnCDJ3lla19bPcPfrMhPLjDlite6sdejhz9lhUck0dO1cFeSDtSw3+4Nbo18BzHFOEm3GN3GCwHeUyQtwipQ=="; }; dependencies = [ (sources."@heroku-cli/color-1.1.14" // { dependencies = [ sources."ansi-regex-4.1.0" sources."ansi-styles-3.2.1" + sources."chalk-2.4.2" sources."color-convert-1.9.3" sources."color-name-1.1.3" + sources."escape-string-regexp-1.0.5" sources."strip-ansi-5.2.0" ]; }) - sources."@mrmlnc/readdir-enhanced-2.2.1" sources."@nodelib/fs.scandir-2.1.5" sources."@nodelib/fs.stat-2.0.5" sources."@nodelib/fs.walk-1.2.8" @@ -89262,40 +92747,54 @@ in }) (sources."@oclif/config-1.17.0" // { dependencies = [ - sources."globby-11.0.4" sources."tslib-2.3.1" ]; }) (sources."@oclif/core-0.5.41" // { dependencies = [ - sources."chalk-4.1.2" (sources."cli-ux-5.6.3" // { dependencies = [ sources."fs-extra-8.1.0" - sources."supports-color-8.1.1" ]; }) sources."fs-extra-9.1.0" - sources."globby-11.0.4" sources."has-flag-4.0.0" sources."jsonfile-6.1.0" - sources."supports-color-7.2.0" + sources."supports-color-8.1.1" sources."tslib-2.3.1" sources."universalify-2.0.0" ]; }) sources."@oclif/errors-1.3.5" sources."@oclif/linewrap-1.0.0" - sources."@oclif/parser-3.8.5" + (sources."@oclif/parser-3.8.5" // { + dependencies = [ + sources."ansi-styles-3.2.1" + sources."chalk-2.4.2" + sources."color-convert-1.9.3" + sources."color-name-1.1.3" + sources."escape-string-regexp-1.0.5" + ]; + }) (sources."@oclif/plugin-autocomplete-0.1.5" // { dependencies = [ + sources."ansi-styles-3.2.1" + sources."chalk-2.4.2" + sources."color-convert-1.9.3" + sources."color-name-1.1.3" sources."debug-3.2.7" + sources."escape-string-regexp-1.0.5" sources."fs-extra-6.0.1" ]; }) (sources."@oclif/plugin-help-1.2.11" // { dependencies = [ sources."ansi-regex-3.0.0" + sources."ansi-styles-3.2.1" + sources."chalk-2.4.2" + sources."color-convert-1.9.3" + sources."color-name-1.1.3" + sources."escape-string-regexp-1.0.5" sources."indent-string-3.2.0" sources."is-fullwidth-code-point-2.0.0" sources."string-width-2.1.1" @@ -89314,27 +92813,13 @@ in sources."ansi-styles-4.3.0" sources."ansicolors-0.3.2" sources."argparse-1.0.10" - sources."arr-diff-4.0.0" - sources."arr-flatten-1.1.0" - sources."arr-union-3.1.0" sources."array-union-2.1.0" - sources."array-uniq-1.0.3" - sources."array-unique-0.3.2" - sources."arrify-1.0.1" - sources."asn1-0.2.4" + sources."asn1-0.2.6" sources."assert-plus-1.0.0" - sources."assign-symbols-1.0.0" sources."asynckit-0.4.0" sources."at-least-node-1.0.0" - sources."atob-2.1.2" sources."aws-sign2-0.7.0" sources."aws4-1.11.0" - sources."balanced-match-1.0.2" - (sources."base-0.11.2" // { - dependencies = [ - sources."define-property-1.0.0" - ]; - }) sources."base64-js-1.5.1" sources."bcrypt-pbkdf-1.0.2" (sources."bl-4.1.0" // { @@ -89345,52 +92830,27 @@ in sources."bluebird-3.7.2" (sources."boxen-5.1.2" // { dependencies = [ - sources."chalk-4.1.2" - sources."has-flag-4.0.0" - sources."supports-color-7.2.0" sources."type-fest-0.20.2" ]; }) - sources."brace-expansion-1.1.11" sources."braces-3.0.2" sources."btoa-lite-1.0.0" sources."buffer-5.7.1" - sources."cache-base-1.0.1" (sources."cacheable-request-2.1.4" // { dependencies = [ sources."lowercase-keys-1.0.0" ]; }) - sources."call-me-maybe-1.0.1" sources."camelcase-6.2.0" sources."cardinal-2.1.1" sources."caseless-0.12.0" - (sources."chalk-2.4.2" // { + (sources."chalk-4.1.2" // { dependencies = [ - sources."ansi-styles-3.2.1" - sources."color-convert-1.9.3" - sources."color-name-1.1.3" - sources."escape-string-regexp-1.0.5" + sources."has-flag-4.0.0" + sources."supports-color-7.2.0" ]; }) sources."chardet-0.7.0" - (sources."class-utils-0.3.6" // { - dependencies = [ - sources."define-property-0.2.5" - (sources."is-accessor-descriptor-0.1.6" // { - dependencies = [ - sources."kind-of-3.2.2" - ]; - }) - (sources."is-data-descriptor-0.1.4" // { - dependencies = [ - sources."kind-of-3.2.2" - ]; - }) - sources."is-descriptor-0.1.6" - sources."kind-of-5.1.0" - ]; - }) sources."clean-stack-3.0.1" sources."cli-boxes-2.2.1" sources."cli-cursor-3.1.0" @@ -89406,9 +92866,11 @@ in sources."ansi-escapes-3.2.0" sources."ansi-regex-4.1.0" sources."ansi-styles-3.2.1" + sources."chalk-2.4.2" sources."clean-stack-2.2.0" sources."color-convert-1.9.3" sources."color-name-1.1.3" + sources."escape-string-regexp-1.0.5" sources."extract-stack-1.0.0" sources."fs-extra-7.0.1" sources."has-flag-2.0.0" @@ -89423,14 +92885,10 @@ in sources."clone-1.0.4" sources."clone-response-1.0.2" sources."co-4.6.0" - sources."collection-visit-1.0.0" sources."color-convert-2.0.1" sources."color-name-1.1.4" sources."colors-1.4.0" sources."combined-stream-1.0.8" - sources."component-emitter-1.3.0" - sources."concat-map-0.0.1" - sources."copy-descriptor-0.1.1" sources."core-util-is-1.0.3" (sources."cross-fetch-3.1.4" // { dependencies = [ @@ -89442,13 +92900,13 @@ in sources."semver-5.7.1" ]; }) + sources."csv-stream-0.2.0" sources."dashdash-1.14.1" sources."debug-4.3.2" sources."decode-uri-component-0.2.0" sources."decompress-response-3.3.0" sources."deep-is-0.1.4" sources."defaults-1.0.3" - sources."define-property-2.0.2" sources."delayed-stream-1.0.0" sources."dir-glob-3.0.1" sources."dotenv-8.6.0" @@ -89462,39 +92920,8 @@ in sources."esutils-2.0.3" sources."event-target-shim-5.0.1" sources."execa-0.10.0" - (sources."expand-brackets-2.1.4" // { - dependencies = [ - sources."debug-2.6.9" - sources."define-property-0.2.5" - sources."extend-shallow-2.0.1" - (sources."is-accessor-descriptor-0.1.6" // { - dependencies = [ - sources."kind-of-3.2.2" - ]; - }) - (sources."is-data-descriptor-0.1.4" // { - dependencies = [ - sources."kind-of-3.2.2" - ]; - }) - sources."is-descriptor-0.1.6" - sources."kind-of-5.1.0" - sources."ms-2.0.0" - ]; - }) sources."extend-3.0.2" - (sources."extend-shallow-3.0.2" // { - dependencies = [ - sources."is-extendable-1.0.1" - ]; - }) sources."external-editor-3.1.0" - (sources."extglob-2.0.4" // { - dependencies = [ - sources."define-property-1.0.0" - sources."extend-shallow-2.0.1" - ]; - }) sources."extract-stack-2.0.0" sources."extsprintf-1.3.0" sources."fast-deep-equal-3.1.3" @@ -89502,13 +92929,7 @@ in sources."fast-json-stable-stringify-2.1.0" sources."fast-levenshtein-2.0.6" sources."fastq-1.13.0" - (sources."faunadb-4.4.1" // { - dependencies = [ - sources."chalk-4.1.2" - sources."has-flag-4.0.0" - sources."supports-color-7.2.0" - ]; - }) + sources."faunadb-4.4.1" (sources."figures-3.2.0" // { dependencies = [ sources."escape-string-regexp-1.0.5" @@ -89516,50 +92937,15 @@ in }) sources."fill-range-7.0.1" sources."fn-annotate-1.2.0" - sources."for-in-1.0.2" sources."forever-agent-0.6.1" sources."form-data-2.3.3" - sources."fragment-cache-0.2.1" sources."from2-2.3.0" sources."fs-extra-8.1.0" - sources."fs.realpath-1.0.0" sources."get-package-type-0.1.0" sources."get-stream-3.0.0" - sources."get-value-2.0.6" sources."getpass-0.1.7" - sources."glob-7.2.0" sources."glob-parent-5.1.2" - sources."glob-to-regexp-0.3.0" - (sources."globby-8.0.2" // { - dependencies = [ - sources."@nodelib/fs.stat-1.1.3" - sources."array-union-1.0.2" - (sources."braces-2.3.2" // { - dependencies = [ - sources."extend-shallow-2.0.1" - ]; - }) - sources."dir-glob-2.0.0" - sources."fast-glob-2.2.7" - (sources."fill-range-4.0.0" // { - dependencies = [ - sources."extend-shallow-2.0.1" - ]; - }) - sources."glob-parent-3.1.0" - sources."ignore-3.3.10" - sources."is-glob-3.1.0" - (sources."is-number-3.0.0" // { - dependencies = [ - sources."kind-of-3.2.2" - ]; - }) - sources."micromatch-3.1.10" - sources."path-type-3.0.0" - sources."slash-1.0.0" - sources."to-regex-range-2.1.1" - ]; - }) + sources."globby-11.0.4" sources."got-8.3.2" sources."graceful-fs-4.2.8" sources."har-schema-2.0.0" @@ -89567,24 +92953,15 @@ in sources."has-flag-3.0.0" sources."has-symbol-support-x-1.4.2" sources."has-to-string-tag-x-1.4.1" - sources."has-value-1.0.0" - (sources."has-values-1.0.0" // { - dependencies = [ - (sources."is-number-3.0.0" // { - dependencies = [ - sources."kind-of-3.2.2" - ]; - }) - sources."kind-of-4.0.0" - ]; - }) (sources."heroku-cli-util-8.0.12" // { dependencies = [ sources."ansi-escapes-3.2.0" sources."ansi-regex-3.0.0" sources."ansi-styles-3.2.1" + sources."chalk-2.4.2" sources."color-convert-1.9.3" sources."color-name-1.1.3" + sources."escape-string-regexp-1.0.5" sources."strip-ansi-4.0.0" ]; }) @@ -89594,25 +92971,13 @@ in sources."hyperlinker-1.0.0" sources."iconv-lite-0.4.24" sources."ieee754-1.2.1" - sources."ignore-5.1.8" + sources."ignore-5.1.9" sources."indent-string-4.0.0" - sources."inflight-1.0.6" sources."inherits-2.0.4" sources."ini-1.3.8" - (sources."inquirer-8.2.0" // { - dependencies = [ - sources."chalk-4.1.2" - sources."has-flag-4.0.0" - sources."supports-color-7.2.0" - ]; - }) + sources."inquirer-8.2.0" sources."into-stream-3.1.0" - sources."is-accessor-descriptor-1.0.0" - sources."is-buffer-1.1.6" - sources."is-data-descriptor-1.0.0" - sources."is-descriptor-1.0.2" sources."is-docker-2.2.1" - sources."is-extendable-0.1.1" sources."is-extglob-2.1.1" sources."is-fullwidth-code-point-3.0.0" sources."is-glob-4.0.3" @@ -89620,16 +92985,13 @@ in sources."is-number-7.0.0" sources."is-object-1.0.2" sources."is-plain-obj-1.1.0" - sources."is-plain-object-2.0.4" sources."is-retry-allowed-1.2.0" sources."is-stream-1.1.0" sources."is-typedarray-1.0.0" sources."is-unicode-supported-0.1.0" - sources."is-windows-1.0.2" sources."is-wsl-2.2.0" sources."isarray-1.0.0" sources."isexe-2.0.0" - sources."isobject-3.0.1" sources."isstream-0.1.2" sources."isurl-1.0.0" sources."js-yaml-3.14.1" @@ -89641,39 +93003,23 @@ in sources."jsonfile-4.0.0" sources."jsprim-1.4.1" sources."keyv-3.0.0" - sources."kind-of-6.0.3" sources."levn-0.3.0" sources."lodash-4.17.21" sources."lodash._reinterpolate-3.0.0" sources."lodash.template-4.5.0" sources."lodash.templatesettings-4.2.0" - (sources."log-symbols-4.1.0" // { - dependencies = [ - sources."chalk-4.1.2" - sources."has-flag-4.0.0" - sources."supports-color-7.2.0" - ]; - }) + sources."log-symbols-4.1.0" sources."lowercase-keys-1.0.1" sources."lru-cache-6.0.0" - sources."map-cache-0.2.2" - sources."map-visit-1.0.0" sources."merge2-1.4.1" sources."micromatch-4.0.4" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."mimic-fn-2.1.0" sources."mimic-response-1.0.1" - sources."minimatch-3.0.4" - (sources."mixin-deep-1.3.2" // { - dependencies = [ - sources."is-extendable-1.0.1" - ]; - }) sources."moment-2.29.1" sources."ms-2.1.2" sources."mute-stream-0.0.8" - sources."nanomatch-1.2.13" sources."natural-orderby-2.0.3" (sources."netrc-parser-3.1.6" // { dependencies = [ @@ -89686,52 +93032,27 @@ in sources."npm-run-path-2.0.2" sources."oauth-sign-0.9.0" sources."object-assign-4.1.1" - (sources."object-copy-0.1.0" // { - dependencies = [ - sources."define-property-0.2.5" - sources."is-accessor-descriptor-0.1.6" - sources."is-data-descriptor-0.1.4" - (sources."is-descriptor-0.1.6" // { - dependencies = [ - sources."kind-of-5.1.0" - ]; - }) - sources."kind-of-3.2.2" - ]; - }) + sources."object-sizeof-1.6.1" sources."object-treeify-1.1.33" - sources."object-visit-1.0.1" - sources."object.pick-1.3.0" - sources."once-1.4.0" sources."onetime-5.1.2" sources."opn-3.0.3" sources."optionator-0.8.3" - (sources."ora-5.4.1" // { - dependencies = [ - sources."chalk-4.1.2" - sources."has-flag-4.0.0" - sources."supports-color-7.2.0" - ]; - }) + sources."ora-5.4.1" sources."os-tmpdir-1.0.2" sources."p-cancelable-0.4.1" sources."p-finally-1.0.0" sources."p-is-promise-1.1.0" sources."p-timeout-2.0.1" - sources."pascalcase-0.1.1" (sources."password-prompt-1.1.2" // { dependencies = [ sources."ansi-escapes-3.2.0" ]; }) - sources."path-dirname-1.0.2" - sources."path-is-absolute-1.0.1" sources."path-key-2.0.1" sources."path-type-4.0.0" sources."performance-now-2.1.0" sources."picomatch-2.3.0" sources."pify-3.0.0" - sources."posix-character-classes-0.1.1" sources."prelude-ls-1.1.2" sources."prepend-http-2.0.0" sources."prettier-2.4.1" @@ -89747,16 +93068,11 @@ in ]; }) sources."redeyed-2.1.1" - sources."regex-not-1.0.2" - sources."repeat-element-1.1.4" - sources."repeat-string-1.6.1" sources."request-2.88.2" sources."request-promise-4.2.6" sources."request-promise-core-1.1.4" - sources."resolve-url-0.2.1" sources."responselike-1.0.2" sources."restore-cursor-3.1.0" - sources."ret-0.1.15" sources."reusify-1.0.4" sources."run-async-2.4.1" sources."run-parallel-1.2.0" @@ -89766,74 +93082,19 @@ in ]; }) sources."safe-buffer-5.2.1" - sources."safe-regex-1.1.0" sources."safer-buffer-2.1.2" sources."semver-7.3.5" - (sources."set-value-2.0.1" // { - dependencies = [ - sources."extend-shallow-2.0.1" - ]; - }) sources."shebang-command-1.2.0" sources."shebang-regex-1.0.0" sources."signal-exit-3.0.5" sources."slash-3.0.0" - (sources."snapdragon-0.8.2" // { - dependencies = [ - sources."debug-2.6.9" - sources."define-property-0.2.5" - sources."extend-shallow-2.0.1" - (sources."is-accessor-descriptor-0.1.6" // { - dependencies = [ - sources."kind-of-3.2.2" - ]; - }) - (sources."is-data-descriptor-0.1.4" // { - dependencies = [ - sources."kind-of-3.2.2" - ]; - }) - sources."is-descriptor-0.1.6" - sources."kind-of-5.1.0" - sources."ms-2.0.0" - sources."source-map-0.5.7" - ]; - }) - (sources."snapdragon-node-2.1.1" // { - dependencies = [ - sources."define-property-1.0.0" - ]; - }) - (sources."snapdragon-util-3.0.1" // { - dependencies = [ - sources."kind-of-3.2.2" - ]; - }) sources."sort-keys-2.0.0" sources."source-map-0.6.1" - sources."source-map-resolve-0.5.3" - sources."source-map-url-0.4.1" - sources."split-string-3.1.0" sources."sprintf-js-1.0.3" sources."sshpk-1.16.1" - (sources."static-extend-0.1.2" // { - dependencies = [ - sources."define-property-0.2.5" - (sources."is-accessor-descriptor-0.1.6" // { - dependencies = [ - sources."kind-of-3.2.2" - ]; - }) - (sources."is-data-descriptor-0.1.4" // { - dependencies = [ - sources."kind-of-3.2.2" - ]; - }) - sources."is-descriptor-0.1.6" - sources."kind-of-5.1.0" - ]; - }) sources."stealthy-require-1.1.1" + sources."stream-chain-2.2.4" + sources."stream-json-1.7.3" sources."strict-uri-encode-1.1.0" sources."string-width-4.2.3" (sources."string_decoder-1.1.1" // { @@ -89853,12 +93114,6 @@ in sources."through-2.3.8" sources."timed-out-4.0.1" sources."tmp-0.0.33" - (sources."to-object-path-0.3.0" // { - dependencies = [ - sources."kind-of-3.2.2" - ]; - }) - sources."to-regex-3.0.2" sources."to-regex-range-5.0.1" sources."tough-cookie-2.5.0" sources."tr46-0.0.3" @@ -89868,23 +93123,10 @@ in sources."tweetnacl-0.14.5" sources."type-check-0.3.2" sources."type-fest-0.21.3" - sources."union-value-1.0.1" sources."universalify-0.1.2" - (sources."unset-value-1.0.0" // { - dependencies = [ - (sources."has-value-0.3.1" // { - dependencies = [ - sources."isobject-2.1.0" - ]; - }) - sources."has-values-0.1.4" - ]; - }) sources."uri-js-4.4.1" - sources."urix-0.1.0" sources."url-parse-lax-3.0.0" sources."url-to-options-1.0.1" - sources."use-3.1.1" sources."util-deprecate-1.0.2" sources."uuid-3.4.0" (sources."verror-1.10.0" // { @@ -89899,7 +93141,6 @@ in sources."widest-line-3.1.0" sources."word-wrap-1.2.3" sources."wrap-ansi-7.0.0" - sources."wrappy-1.0.2" sources."yallist-4.0.0" ]; buildInputs = globalBuildInputs; @@ -89915,10 +93156,10 @@ in firebase-tools = nodeEnv.buildNodePackage { name = "firebase-tools"; packageName = "firebase-tools"; - version = "9.21.0"; + version = "9.22.0"; src = fetchurl { - url = "https://registry.npmjs.org/firebase-tools/-/firebase-tools-9.21.0.tgz"; - sha512 = "/Zp9dHhofgKhCSfeLmlecNQ7YX1//db80sFHDHonBxJMqThju8LVpeppHvszJF2WmlkyV3PWeikmB2zB8jvdmg=="; + url = "https://registry.npmjs.org/firebase-tools/-/firebase-tools-9.22.0.tgz"; + sha512 = "RVPrINZOe68XcqKIi81+Jdtb24qKKc4oifBDlwPOqahShjrCX1GsaaRGSQUvh3yl3X52SjJ/sc3AYCaD9qqH0g=="; }; dependencies = [ (sources."@apidevtools/json-schema-ref-parser-9.0.9" // { @@ -89932,12 +93173,12 @@ in sources."@google-cloud/precise-date-2.0.4" sources."@google-cloud/projectify-2.1.1" sources."@google-cloud/promisify-2.0.4" - (sources."@google-cloud/pubsub-2.18.1" // { + (sources."@google-cloud/pubsub-2.18.2" // { dependencies = [ - sources."google-auth-library-7.10.1" + sources."google-auth-library-7.10.2" ]; }) - sources."@grpc/grpc-js-1.4.2" + sources."@grpc/grpc-js-1.4.4" sources."@grpc/proto-loader-0.6.6" sources."@jsdevtools/ono-7.1.3" (sources."@npmcli/fs-1.0.0" // { @@ -89971,7 +93212,7 @@ in sources."@types/json-schema-7.0.9" sources."@types/long-4.0.1" sources."@types/minimatch-3.0.5" - sources."@types/node-16.11.6" + sources."@types/node-16.11.7" sources."JSONStream-1.3.5" sources."abbrev-1.1.1" sources."abort-controller-3.0.0" @@ -90006,7 +93247,7 @@ in sources."array-flatten-1.1.1" sources."arrify-2.0.1" sources."as-array-2.0.0" - sources."asn1-0.2.4" + sources."asn1-0.2.6" sources."assert-plus-1.0.0" sources."ast-types-0.13.4" sources."async-3.2.2" @@ -90022,7 +93263,7 @@ in }) sources."basic-auth-connect-1.0.0" sources."bcrypt-pbkdf-1.0.2" - sources."big-integer-1.6.50" + sources."big-integer-1.6.51" sources."bignumber.js-9.0.1" sources."binary-0.3.0" sources."binary-extensions-2.2.0" @@ -90311,9 +93552,9 @@ in sources."glob-slasher-1.0.1" sources."global-dirs-2.1.0" sources."google-auth-library-6.1.6" - (sources."google-gax-2.28.0" // { + (sources."google-gax-2.28.1" // { dependencies = [ - sources."google-auth-library-7.10.1" + sources."google-auth-library-7.10.2" ]; }) sources."google-p12-pem-3.1.2" @@ -90484,8 +93725,8 @@ in sources."merge-descriptors-1.0.1" sources."methods-1.1.2" sources."mime-2.6.0" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."mimic-fn-1.2.0" sources."mimic-response-1.0.1" sources."minimatch-3.0.4" @@ -90520,7 +93761,7 @@ in sources."node-emoji-1.11.0" sources."node-fetch-2.6.6" sources."node-forge-0.10.0" - (sources."node-gyp-8.3.0" // { + (sources."node-gyp-8.4.0" // { dependencies = [ sources."mkdirp-1.0.4" sources."semver-7.3.5" @@ -91107,7 +94348,7 @@ in sources."@types/atob-2.1.2" sources."@types/bn.js-5.1.0" sources."@types/inquirer-6.5.0" - sources."@types/node-16.11.6" + sources."@types/node-16.11.7" sources."@types/pbkdf2-3.1.0" sources."@types/secp256k1-4.0.3" sources."@types/through-0.0.30" @@ -91116,7 +94357,7 @@ in sources."ansi-regex-5.0.1" sources."ansi-styles-4.3.0" sources."argparse-1.0.10" - sources."asn1-0.2.4" + sources."asn1-0.2.6" sources."assert-plus-1.0.0" sources."async-0.2.10" sources."asynckit-0.4.0" @@ -91219,8 +94460,8 @@ in sources."locate-path-5.0.0" sources."lodash-4.17.21" sources."md5.js-1.3.5" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."mimic-fn-2.1.0" sources."minimalistic-assert-1.0.1" sources."minimalistic-crypto-utils-1.0.1" @@ -91811,10 +95052,10 @@ in gatsby-cli = nodeEnv.buildNodePackage { name = "gatsby-cli"; packageName = "gatsby-cli"; - version = "4.1.0"; + version = "4.1.3"; src = fetchurl { - url = "https://registry.npmjs.org/gatsby-cli/-/gatsby-cli-4.1.0.tgz"; - sha512 = "OTXkUHYdv8af4rQm4AJy6fnKyGNVLol3h3vfFESa7+h/7xgXHdO/2lQukMfvvzkTIPhqbvSqab/thd3xJhgKGw=="; + url = "https://registry.npmjs.org/gatsby-cli/-/gatsby-cli-4.1.3.tgz"; + sha512 = "GKOKnNXNMCJ/FDTieZ0eAVbOWoDRzSbbUU1+QQzbSvWl2fBtWXvpz9Grrk66gkHlu1KtqzuN9zR11AIa12dEzw=="; }; dependencies = [ (sources."@ardatan/aggregate-error-0.0.6" // { @@ -91836,7 +95077,7 @@ in ]; }) sources."@babel/helper-annotate-as-pure-7.16.0" - (sources."@babel/helper-compilation-targets-7.16.0" // { + (sources."@babel/helper-compilation-targets-7.16.3" // { dependencies = [ sources."semver-6.3.0" ]; @@ -91855,24 +95096,24 @@ in sources."@babel/helper-split-export-declaration-7.16.0" sources."@babel/helper-validator-identifier-7.15.7" sources."@babel/helper-validator-option-7.14.5" - sources."@babel/helpers-7.16.0" + sources."@babel/helpers-7.16.3" (sources."@babel/highlight-7.16.0" // { dependencies = [ sources."chalk-2.4.2" ]; }) - sources."@babel/parser-7.16.2" + sources."@babel/parser-7.16.3" sources."@babel/plugin-proposal-object-rest-spread-7.10.4" sources."@babel/plugin-proposal-optional-chaining-7.16.0" sources."@babel/plugin-syntax-jsx-7.16.0" sources."@babel/plugin-syntax-object-rest-spread-7.8.3" sources."@babel/plugin-syntax-optional-chaining-7.8.3" - sources."@babel/plugin-transform-parameters-7.16.0" + sources."@babel/plugin-transform-parameters-7.16.3" sources."@babel/plugin-transform-react-jsx-7.16.0" - sources."@babel/runtime-7.16.0" - sources."@babel/standalone-7.16.2" + sources."@babel/runtime-7.16.3" + sources."@babel/standalone-7.16.3" sources."@babel/template-7.16.0" - sources."@babel/traverse-7.16.0" + sources."@babel/traverse-7.16.3" sources."@babel/types-7.16.0" sources."@graphql-tools/schema-7.1.5" sources."@graphql-tools/utils-7.10.0" @@ -91918,7 +95159,7 @@ in sources."@types/keyv-3.1.3" sources."@types/mdast-3.0.10" sources."@types/ms-0.7.31" - sources."@types/node-16.11.6" + sources."@types/node-16.11.7" sources."@types/node-fetch-2.5.12" sources."@types/responselike-1.0.0" sources."@types/unist-2.0.6" @@ -91971,7 +95212,7 @@ in sources."call-bind-1.0.2" sources."camel-case-4.1.2" sources."camelcase-6.2.0" - sources."caniuse-lite-1.0.30001274" + sources."caniuse-lite-1.0.30001280" sources."ccount-1.1.0" (sources."chalk-4.1.2" // { dependencies = [ @@ -92011,7 +95252,7 @@ in sources."color-convert-1.9.3" sources."color-name-1.1.3" sources."combined-stream-1.0.8" - sources."common-tags-1.8.0" + sources."common-tags-1.8.1" sources."concat-map-0.0.1" sources."configstore-5.0.1" (sources."content-disposition-0.5.3" // { @@ -92020,9 +95261,9 @@ in ]; }) sources."content-type-1.0.4" - (sources."contentful-management-7.45.0" // { + (sources."contentful-management-7.45.2" // { dependencies = [ - sources."type-fest-0.21.3" + sources."type-fest-2.5.3" ]; }) sources."contentful-sdk-core-6.10.3" @@ -92035,7 +95276,7 @@ in sources."cookie-0.4.0" sources."cookie-signature-1.0.6" sources."cors-2.8.5" - sources."create-gatsby-2.1.0" + sources."create-gatsby-2.1.1" (sources."cross-spawn-6.0.5" // { dependencies = [ sources."semver-5.7.1" @@ -92076,7 +95317,7 @@ in sources."dotenv-8.6.0" sources."duplexer3-0.1.4" sources."ee-first-1.1.1" - sources."electron-to-chromium-1.3.887" + sources."electron-to-chromium-1.3.895" sources."emoji-regex-8.0.0" sources."encodeurl-1.0.2" sources."end-of-stream-1.4.4" @@ -92148,13 +95389,13 @@ in sources."fs.realpath-1.0.0" sources."fsevents-2.3.2" sources."function-bind-1.1.1" - sources."gatsby-core-utils-3.1.0" - (sources."gatsby-recipes-1.1.0" // { + sources."gatsby-core-utils-3.1.2" + (sources."gatsby-recipes-1.1.2" // { dependencies = [ sources."strip-ansi-6.0.1" ]; }) - (sources."gatsby-telemetry-3.1.0" // { + (sources."gatsby-telemetry-3.1.2" // { dependencies = [ sources."ansi-styles-4.3.0" sources."boxen-4.2.0" @@ -92213,19 +95454,19 @@ in ]; }) sources."ipaddr.js-1.9.1" - sources."is-alphabetical-2.0.0" + sources."is-alphabetical-2.0.1" sources."is-alphanumeric-1.0.0" - sources."is-alphanumerical-2.0.0" + sources."is-alphanumerical-2.0.1" sources."is-binary-path-2.1.0" sources."is-buffer-2.0.5" sources."is-ci-2.0.0" sources."is-core-module-2.8.0" - sources."is-decimal-2.0.0" + sources."is-decimal-2.0.1" sources."is-docker-2.2.1" sources."is-extglob-2.1.1" sources."is-fullwidth-code-point-3.0.0" sources."is-glob-4.0.3" - sources."is-hexadecimal-2.0.0" + sources."is-hexadecimal-2.0.1" sources."is-installed-globally-0.4.0" (sources."is-invalid-path-0.1.0" // { dependencies = [ @@ -92337,8 +95578,8 @@ in sources."micromark-util-symbol-1.0.0" sources."micromark-util-types-1.0.1" sources."mime-1.6.0" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."mimic-fn-2.1.0" sources."mimic-response-1.0.1" sources."minimatch-3.0.4" @@ -92947,11 +96188,11 @@ in sources."ip-1.1.5" sources."is-canonical-base64-1.1.1" sources."is-my-ip-valid-1.0.0" - sources."is-my-json-valid-2.20.5" + sources."is-my-json-valid-2.20.6" sources."is-property-1.0.2" sources."is-valid-domain-0.0.20" sources."json-buffer-2.0.11" - sources."jsonpointer-4.1.0" + sources."jsonpointer-5.0.0" sources."kvgraph-0.1.0" sources."kvset-1.0.0" sources."libsodium-0.7.9" @@ -92959,8 +96200,8 @@ in sources."lodash.get-4.4.2" sources."looper-4.0.0" sources."lrucache-1.0.3" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."minimist-1.2.5" sources."mkdirp-0.5.5" sources."moment-2.29.1" @@ -93120,6 +96361,115 @@ in bypassCache = true; reconstructLock = true; }; + "@gitbeaker/cli" = nodeEnv.buildNodePackage { + name = "_at_gitbeaker_slash_cli"; + packageName = "@gitbeaker/cli"; + version = "34.5.0"; + src = fetchurl { + url = "https://registry.npmjs.org/@gitbeaker/cli/-/cli-34.5.0.tgz"; + sha512 = "lOagLq2JwEbAnppLKWZlh1wfZv2r+FJfIvOgxtf+sy+t+CtQNIXuyPzBhzqgEKhpDDKqfSF7L9diEXVPXsISEA=="; + }; + dependencies = [ + sources."@gitbeaker/core-34.5.0" + sources."@gitbeaker/node-34.5.0" + sources."@gitbeaker/requester-utils-34.5.0" + sources."@sindresorhus/is-4.2.0" + sources."@szmarczak/http-timer-4.0.6" + sources."@types/cacheable-request-6.0.2" + sources."@types/http-cache-semantics-4.0.1" + sources."@types/keyv-3.1.3" + sources."@types/node-16.11.7" + sources."@types/responselike-1.0.0" + sources."ansi-regex-6.0.1" + sources."ansi-styles-4.3.0" + sources."asynckit-0.4.0" + sources."base64-js-1.5.1" + sources."bl-5.0.0" + sources."buffer-6.0.3" + sources."cacheable-lookup-5.0.4" + sources."cacheable-request-7.0.2" + sources."call-bind-1.0.2" + sources."chalk-4.1.2" + sources."cli-cursor-4.0.0" + sources."cli-spinners-2.6.1" + sources."clone-1.0.4" + sources."clone-response-1.0.2" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + sources."combined-stream-1.0.8" + sources."decode-uri-component-0.2.0" + (sources."decompress-response-6.0.0" // { + dependencies = [ + sources."mimic-response-3.1.0" + ]; + }) + sources."defaults-1.0.3" + sources."defer-to-connect-2.0.1" + sources."delay-5.0.0" + sources."delayed-stream-1.0.0" + sources."end-of-stream-1.4.4" + sources."filter-obj-1.1.0" + sources."form-data-4.0.0" + sources."function-bind-1.1.1" + sources."get-intrinsic-1.1.1" + sources."get-stream-5.2.0" + sources."got-11.8.2" + sources."has-1.0.3" + sources."has-flag-4.0.0" + sources."has-symbols-1.0.2" + sources."http-cache-semantics-4.1.0" + sources."http2-wrapper-1.0.3" + sources."ieee754-1.2.1" + sources."inherits-2.0.4" + sources."is-interactive-2.0.0" + sources."is-unicode-supported-1.1.0" + sources."json-buffer-3.0.1" + sources."keyv-4.0.4" + sources."li-1.3.0" + sources."log-symbols-5.0.0" + sources."lowercase-keys-2.0.0" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" + sources."mimic-fn-2.1.0" + sources."mimic-response-1.0.1" + sources."normalize-url-6.1.0" + sources."object-inspect-1.11.0" + sources."once-1.4.0" + sources."onetime-5.1.2" + sources."ora-6.0.1" + sources."p-cancelable-2.1.1" + sources."pump-3.0.0" + sources."qs-6.10.1" + sources."query-string-7.0.1" + sources."quick-lru-5.1.1" + sources."readable-stream-3.6.0" + sources."resolve-alpn-1.2.1" + sources."responselike-2.0.0" + sources."restore-cursor-4.0.0" + sources."safe-buffer-5.2.1" + sources."side-channel-1.0.4" + sources."signal-exit-3.0.5" + sources."split-on-first-1.1.0" + sources."strict-uri-encode-2.0.0" + sources."string_decoder-1.3.0" + sources."strip-ansi-7.0.1" + sources."supports-color-7.2.0" + sources."sywac-1.3.0" + sources."util-deprecate-1.0.2" + sources."wcwidth-1.0.1" + sources."wrappy-1.0.2" + sources."xcase-2.0.1" + ]; + buildInputs = globalBuildInputs; + meta = { + description = "Full NodeJS CLI implementation of the GitLab API."; + homepage = "https://github.com/jdalrymple/gitbeaker#readme"; + license = "MIT"; + }; + production = true; + bypassCache = true; + reconstructLock = true; + }; gitmoji-cli = nodeEnv.buildNodePackage { name = "gitmoji-cli"; packageName = "gitmoji-cli"; @@ -93147,7 +96497,7 @@ in sources."@types/minimist-1.2.2" sources."@types/normalize-package-data-2.4.1" sources."agent-base-6.0.2" - sources."ajv-8.6.3" + sources."ajv-8.7.1" sources."ajv-formats-2.1.1" sources."ansi-align-3.0.1" sources."ansi-escapes-4.3.2" @@ -93556,9 +96906,9 @@ in sources."tslib-2.1.0" ]; }) - (sources."@graphql-tools/import-6.5.8" // { + (sources."@graphql-tools/import-6.6.1" // { dependencies = [ - sources."@graphql-tools/utils-8.5.2" + sources."@graphql-tools/utils-8.5.3" sources."tslib-2.3.1" ]; }) @@ -93586,7 +96936,7 @@ in (sources."@graphql-tools/schema-8.3.1" // { dependencies = [ sources."@graphql-tools/merge-8.2.1" - sources."@graphql-tools/utils-8.5.2" + sources."@graphql-tools/utils-8.5.3" sources."tslib-2.3.1" ]; }) @@ -93617,7 +96967,7 @@ in sources."@nodelib/fs.walk-1.2.8" sources."@sindresorhus/is-0.14.0" sources."@szmarczak/http-timer-1.1.2" - sources."@types/node-16.11.6" + sources."@types/node-16.11.7" sources."@types/parse-json-4.0.0" sources."@types/websocket-1.0.2" sources."abort-controller-3.0.0" @@ -93632,7 +96982,7 @@ in sources."ansi-styles-4.3.0" sources."argparse-1.0.10" sources."array-union-2.1.0" - sources."asn1-0.2.4" + sources."asn1-0.2.6" sources."assert-plus-1.0.0" sources."asynckit-0.4.0" sources."at-least-node-1.0.0" @@ -93782,7 +97132,7 @@ in sources."http2-client-1.3.5" sources."iconv-lite-0.4.24" sources."ieee754-1.2.1" - sources."ignore-5.1.8" + sources."ignore-5.1.9" (sources."import-fresh-3.3.0" // { dependencies = [ sources."resolve-from-4.0.0" @@ -93884,8 +97234,8 @@ in sources."merge2-1.4.1" sources."meros-1.1.4" sources."micromatch-4.0.4" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."mimic-fn-1.2.0" sources."mimic-response-1.0.1" sources."minimatch-3.0.4" @@ -94078,6 +97428,279 @@ in bypassCache = true; reconstructLock = true; }; + graphqurl = nodeEnv.buildNodePackage { + name = "graphqurl"; + packageName = "graphqurl"; + version = "1.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/graphqurl/-/graphqurl-1.0.1.tgz"; + sha512 = "97Chda90OBIHCpH6iQHNYc9qTTADN0LOFbiMcRws3V5SottC/0yTDIQDgBzncZYVCkttyjAnT6YmVuNId7ymQA=="; + }; + dependencies = [ + sources."@cronvel/get-pixels-3.4.0" + sources."@nodelib/fs.scandir-2.1.5" + sources."@nodelib/fs.stat-2.0.5" + sources."@nodelib/fs.walk-1.2.8" + sources."@oclif/command-1.8.0" + (sources."@oclif/config-1.17.0" // { + dependencies = [ + sources."tslib-2.3.1" + ]; + }) + sources."@oclif/errors-1.3.4" + sources."@oclif/linewrap-1.0.0" + sources."@oclif/parser-3.8.5" + (sources."@oclif/plugin-help-3.2.1" // { + dependencies = [ + sources."ansi-regex-3.0.0" + sources."is-fullwidth-code-point-2.0.0" + (sources."wrap-ansi-4.0.0" // { + dependencies = [ + sources."string-width-2.1.1" + sources."strip-ansi-4.0.0" + ]; + }) + ]; + }) + sources."@oclif/screen-1.0.4" + sources."accepts-1.3.7" + sources."ansi-escapes-3.2.0" + sources."ansi-regex-5.0.1" + sources."ansi-styles-3.2.1" + sources."ansicolors-0.3.2" + sources."array-flatten-1.1.1" + sources."array-union-2.1.0" + sources."async-limiter-1.0.1" + sources."backo2-1.0.2" + (sources."body-parser-1.18.2" // { + dependencies = [ + sources."debug-2.6.9" + sources."ms-2.0.0" + ]; + }) + sources."braces-3.0.2" + sources."bytes-3.0.0" + sources."cardinal-2.1.1" + sources."chalk-2.4.2" + sources."chroma-js-2.1.2" + (sources."clean-stack-3.0.1" // { + dependencies = [ + sources."escape-string-regexp-4.0.0" + ]; + }) + (sources."cli-ux-4.9.3" // { + dependencies = [ + sources."ansi-regex-4.1.0" + sources."clean-stack-2.2.0" + sources."fs-extra-7.0.1" + sources."indent-string-3.2.0" + sources."is-wsl-1.1.0" + sources."semver-5.7.1" + sources."strip-ansi-5.2.0" + ]; + }) + sources."color-convert-1.9.3" + sources."color-name-1.1.3" + sources."content-disposition-0.5.2" + sources."content-type-1.0.4" + sources."cookie-0.3.1" + sources."cookie-signature-1.0.6" + (sources."cross-env-6.0.3" // { + dependencies = [ + sources."cross-spawn-7.0.3" + sources."path-key-3.1.1" + sources."shebang-command-2.0.0" + sources."shebang-regex-3.0.0" + sources."which-2.0.2" + ]; + }) + (sources."cross-spawn-6.0.5" // { + dependencies = [ + sources."semver-5.7.1" + ]; + }) + sources."cwise-compiler-1.1.3" + sources."debug-4.3.2" + sources."depd-1.1.2" + sources."destroy-1.0.4" + sources."dir-glob-3.0.1" + sources."ee-first-1.1.1" + sources."emoji-regex-8.0.0" + sources."encodeurl-1.0.2" + sources."escape-html-1.0.3" + sources."escape-string-regexp-1.0.5" + sources."esprima-4.0.1" + sources."etag-1.8.1" + sources."eventemitter3-3.1.2" + (sources."express-4.16.3" // { + dependencies = [ + sources."debug-2.6.9" + sources."ms-2.0.0" + ]; + }) + sources."extract-stack-1.0.0" + sources."fast-glob-3.2.7" + sources."fastq-1.13.0" + sources."fill-range-7.0.1" + (sources."finalhandler-1.1.1" // { + dependencies = [ + sources."debug-2.6.9" + sources."ms-2.0.0" + ]; + }) + sources."forwarded-0.2.0" + sources."fresh-0.5.2" + sources."fs-extra-8.1.0" + sources."glob-parent-5.1.2" + sources."globby-11.0.4" + sources."graceful-fs-4.2.8" + sources."graphql-15.4.0" + (sources."graphql-language-service-interface-2.9.1" // { + dependencies = [ + sources."graphql-language-service-utils-2.6.0" + ]; + }) + sources."graphql-language-service-parser-1.10.0" + sources."graphql-language-service-types-1.8.3" + sources."graphql-language-service-utils-2.5.1" + sources."has-flag-3.0.0" + sources."http-errors-1.6.3" + sources."hyperlinker-1.0.0" + sources."iconv-lite-0.4.19" + sources."ignore-5.1.9" + sources."indent-string-4.0.0" + sources."inherits-2.0.3" + sources."iota-array-1.0.0" + sources."ipaddr.js-1.9.1" + sources."is-buffer-1.1.6" + sources."is-docker-2.2.1" + sources."is-extglob-2.1.1" + sources."is-fullwidth-code-point-3.0.0" + sources."is-glob-4.0.3" + sources."is-number-7.0.0" + sources."is-wsl-2.2.0" + sources."isexe-2.0.0" + sources."isomorphic-fetch-3.0.0" + sources."isomorphic-ws-4.0.1" + sources."iterall-1.3.0" + sources."jpeg-js-0.4.3" + sources."jsonfile-4.0.0" + sources."lazyness-1.2.0" + sources."lodash-4.17.21" + sources."lodash._reinterpolate-3.0.0" + sources."lodash.template-4.5.0" + sources."lodash.templatesettings-4.2.0" + sources."lru-cache-6.0.0" + sources."media-typer-0.3.0" + sources."merge-descriptors-1.0.1" + sources."merge2-1.4.1" + sources."methods-1.1.2" + sources."micromatch-4.0.4" + sources."mime-1.4.1" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" + sources."ms-2.1.2" + sources."ndarray-1.0.19" + sources."ndarray-pack-1.2.1" + sources."negotiator-0.6.2" + sources."nextgen-events-1.5.2" + sources."nice-try-1.0.5" + sources."node-bitmap-0.0.1" + sources."node-fetch-2.6.6" + sources."nullthrows-1.1.1" + sources."omggif-1.0.10" + sources."on-finished-2.3.0" + sources."open-7.3.1" + sources."parseurl-1.3.3" + sources."password-prompt-1.1.2" + sources."path-key-2.0.1" + sources."path-to-regexp-0.1.7" + sources."path-type-4.0.0" + sources."picomatch-2.3.0" + sources."pngjs-5.0.0" + sources."proxy-addr-2.0.7" + sources."qs-6.5.1" + sources."queue-microtask-1.2.3" + sources."range-parser-1.2.1" + (sources."raw-body-2.3.2" // { + dependencies = [ + sources."depd-1.1.1" + sources."http-errors-1.6.2" + sources."setprototypeof-1.0.3" + ]; + }) + sources."redeyed-2.1.1" + sources."reusify-1.0.4" + sources."run-parallel-1.2.0" + sources."safe-buffer-5.1.1" + sources."semver-7.3.5" + (sources."send-0.16.2" // { + dependencies = [ + sources."debug-2.6.9" + sources."ms-2.0.0" + ]; + }) + sources."serve-static-1.13.2" + sources."setimmediate-1.0.5" + sources."setprototypeof-1.1.0" + sources."seventh-0.7.40" + sources."shebang-command-1.2.0" + sources."shebang-regex-1.0.0" + sources."slash-3.0.0" + sources."statuses-1.4.0" + sources."string-kit-0.11.10" + sources."string-width-4.2.3" + sources."strip-ansi-6.0.1" + (sources."subscriptions-transport-ws-0.9.18" // { + dependencies = [ + sources."ws-5.2.3" + ]; + }) + sources."supports-color-5.5.0" + (sources."supports-hyperlinks-1.0.1" // { + dependencies = [ + sources."has-flag-2.0.0" + ]; + }) + sources."symbol-observable-1.2.0" + sources."terminal-kit-1.49.4" + sources."to-regex-range-5.0.1" + sources."tr46-0.0.3" + sources."tree-kit-0.7.4" + sources."treeify-1.1.0" + sources."tslib-1.14.1" + sources."type-is-1.6.18" + sources."uniq-1.0.1" + sources."universalify-0.1.2" + sources."unpipe-1.0.0" + sources."utils-merge-1.0.1" + sources."vary-1.1.2" + sources."vscode-languageserver-types-3.16.0" + sources."webidl-conversions-3.0.1" + sources."whatwg-fetch-3.6.2" + sources."whatwg-url-5.0.0" + sources."which-1.3.1" + sources."widest-line-3.1.0" + (sources."wrap-ansi-7.0.0" // { + dependencies = [ + sources."ansi-styles-4.3.0" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + ]; + }) + sources."ws-7.4.2" + sources."yallist-4.0.0" + ]; + buildInputs = globalBuildInputs; + meta = { + description = "cURL for GraphQL - CLI and JS library for making GraphQL queries"; + homepage = "https://github.com/hasura/graphqurl"; + license = "Apache-2.0"; + }; + production = true; + bypassCache = true; + reconstructLock = true; + }; grunt-cli = nodeEnv.buildNodePackage { name = "grunt-cli"; packageName = "grunt-cli"; @@ -94210,8 +97833,8 @@ in sources."merge-descriptors-1.0.1" sources."methods-1.1.2" sources."mime-1.6.0" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."minimist-1.2.5" sources."ms-2.0.0" sources."negotiator-0.6.2" @@ -94375,7 +97998,7 @@ in sources."supports-color-7.2.0" ]; }) - sources."systeminformation-5.9.9" + sources."systeminformation-5.9.11" sources."term-canvas-0.0.5" sources."type-fest-0.21.3" sources."wordwrap-0.0.3" @@ -95287,13 +98910,13 @@ in htmlhint = nodeEnv.buildNodePackage { name = "htmlhint"; packageName = "htmlhint"; - version = "0.16.0"; + version = "0.16.1"; src = fetchurl { - url = "https://registry.npmjs.org/htmlhint/-/htmlhint-0.16.0.tgz"; - sha512 = "p2QZA9o6uSOVVNRdhtLKx1c0DxKw6hZAJXx0Ubv6NkCTsWIxA4FZzVQd8mkSOF7oNbA5S6yLBQSHtDhaw8aRbg=="; + url = "https://registry.npmjs.org/htmlhint/-/htmlhint-0.16.1.tgz"; + sha512 = "5uxZsGTC8ILh9W9K/7eJ2pCfP7Hj4VEF2wLlm56qhMvvnXbzfgdRgSwBPqtY46jSWWJAv9J1SegFLI3xfwIteQ=="; }; dependencies = [ - sources."@types/node-16.11.6" + sources."@types/node-16.11.7" sources."@types/node-fetch-2.5.12" sources."ansi-styles-4.3.0" sources."async-3.2.0" @@ -95318,8 +98941,8 @@ in sources."is-dotfile-1.0.3" sources."is-extglob-1.0.0" sources."is-glob-2.0.1" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."minimatch-3.0.4" sources."node-fetch-2.6.6" sources."once-1.4.0" @@ -95569,16 +99192,16 @@ in dependencies = [ sources."@fast-csv/format-4.3.5" sources."@fast-csv/parse-4.3.6" - sources."@types/node-14.17.32" + sources."@types/node-14.17.33" sources."ajv-6.12.6" sources."ansi-regex-5.0.1" sources."ansi-styles-4.3.0" sources."argparse-1.0.10" - sources."asn1-0.2.4" + sources."asn1-0.2.6" sources."assert-plus-1.0.0" sources."async-2.6.3" sources."asynckit-0.4.0" - sources."aws-sdk-2.1020.0" + sources."aws-sdk-2.1027.0" sources."aws-sign2-0.7.0" sources."aws4-1.11.0" sources."base64-js-1.5.1" @@ -95681,12 +99304,12 @@ in sources."lodash.some-4.6.0" sources."lodash.uniq-4.5.0" sources."marked-2.1.3" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."minimist-1.2.5" sources."mkdirp-0.5.5" sources."moment-2.29.1" - sources."moment-timezone-0.5.33" + sources."moment-timezone-0.5.34" sources."ms-2.1.2" sources."mute-stream-0.0.8" sources."named-regexp-0.1.1" @@ -95813,7 +99436,7 @@ in sources."ansi-styles-2.2.1" sources."argparse-1.0.10" sources."asap-2.0.6" - sources."asn1-0.2.4" + sources."asn1-0.2.6" sources."assert-plus-1.0.0" sources."asynckit-0.4.0" sources."aws-sign2-0.7.0" @@ -95928,8 +99551,8 @@ in sources."longest-1.0.1" sources."lowercase-keys-1.0.1" sources."mime-1.6.0" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."minimist-1.2.5" sources."mkdirp-0.5.5" sources."ms-2.0.0" @@ -96223,7 +99846,7 @@ in sources."abbrev-1.1.1" sources."ajv-6.12.6" sources."applicationinsights-1.8.10" - sources."asn1-0.2.4" + sources."asn1-0.2.6" sources."assert-plus-1.0.0" sources."async-hook-jl-1.7.6" (sources."async-listener-0.6.10" // { @@ -96325,8 +99948,8 @@ in }) sources."merge2-1.4.1" sources."micromatch-4.0.4" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."minimatch-3.0.4" sources."minimist-1.2.5" sources."mkdirp-1.0.4" @@ -96573,8 +100196,8 @@ in sources."macos-release-2.5.0" sources."methods-1.1.2" sources."mime-2.6.0" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."mimic-fn-1.2.0" sources."minimatch-3.0.4" sources."minimist-1.2.5" @@ -96711,14 +100334,14 @@ in bypassCache = true; reconstructLock = true; }; - "iosevka-https://github.com/be5invis/Iosevka/archive/v10.3.1.tar.gz" = nodeEnv.buildNodePackage { + "iosevka-https://github.com/be5invis/Iosevka/archive/v11.0.1.tar.gz" = nodeEnv.buildNodePackage { name = "iosevka"; packageName = "iosevka"; - version = "10.3.1"; + version = "11.0.1"; src = fetchurl { - name = "iosevka-10.3.1.tar.gz"; - url = "https://codeload.github.com/be5invis/Iosevka/tar.gz/v10.3.1"; - sha256 = "c92931d145fc90542fccaf9d22a9a49fa0551b8b0cd1e8bf92719c5a5092ac2a"; + name = "iosevka-11.0.1.tar.gz"; + url = "https://codeload.github.com/be5invis/Iosevka/tar.gz/v11.0.1"; + sha256 = "5f19c33cf90a4d4b0e6b14aa5866a81fa724042e934811b618d5f4e74e310043"; }; dependencies = [ sources."@iarna/toml-2.2.5" @@ -96891,7 +100514,7 @@ in sources."typo-geom-0.12.1" sources."unicoderegexp-0.4.1" sources."universalify-2.0.0" - (sources."verda-1.4.1" // { + (sources."verda-1.4.2" // { dependencies = [ sources."ansi-styles-4.3.0" sources."chalk-4.1.2" @@ -97049,30 +100672,30 @@ in joplin = nodeEnv.buildNodePackage { name = "joplin"; packageName = "joplin"; - version = "2.4.1"; + version = "2.6.1"; src = fetchurl { - url = "https://registry.npmjs.org/joplin/-/joplin-2.4.1.tgz"; - sha512 = "5ao7WEDYzEe0eMyFQAjtOkXI5mN+4KqUfCW/xQvigeEwRPuljLGgyqj0w/U915CXnAk4QifOA5vQ6HXL65WgJQ=="; + url = "https://registry.npmjs.org/joplin/-/joplin-2.6.1.tgz"; + sha512 = "fnpQ169874h4kg9yYrqAt/kuJuNEKngNQk1FjIFoIZaQJ6iLV6vnqFSl/ncF/dNK6OJahcngtAcFBHHyYxTF1A=="; }; dependencies = [ sources."@braintree/sanitize-url-3.1.0" sources."@cronvel/get-pixels-3.4.0" - sources."@joplin/fork-htmlparser2-4.1.36" - sources."@joplin/fork-sax-1.2.40" - sources."@joplin/lib-2.4.3" - (sources."@joplin/renderer-2.4.3" // { + sources."@joplin/fork-htmlparser2-4.1.38" + sources."@joplin/fork-sax-1.2.42" + sources."@joplin/lib-2.6.2" + (sources."@joplin/renderer-2.6.2" // { dependencies = [ sources."fs-extra-8.1.0" sources."jsonfile-4.0.0" sources."uslug-git+https://github.com/laurent22/uslug.git#emoji-support" ]; }) - (sources."@joplin/turndown-4.0.58" // { + (sources."@joplin/turndown-4.0.60" // { dependencies = [ sources."css-2.2.4" ]; }) - sources."@joplin/turndown-plugin-gfm-1.0.40" + sources."@joplin/turndown-plugin-gfm-1.0.42" sources."abab-2.0.5" sources."abbrev-1.1.1" sources."acorn-7.4.1" @@ -97098,21 +100721,17 @@ in sources."anymatch-3.1.2" sources."aproba-1.2.0" sources."are-we-there-yet-1.1.7" - (sources."argparse-1.0.10" // { - dependencies = [ - sources."sprintf-js-1.0.3" - ]; - }) + sources."argparse-2.0.1" sources."array-back-2.0.0" sources."array-equal-1.0.0" sources."array-flatten-3.0.0" sources."asap-2.0.6" - sources."asn1-0.2.4" + sources."asn1-0.2.6" sources."assert-plus-1.0.0" sources."async-mutex-0.1.4" sources."asynckit-0.4.0" sources."atob-2.1.2" - (sources."aws-sdk-2.1020.0" // { + (sources."aws-sdk-2.1027.0" // { dependencies = [ sources."sax-1.2.1" sources."uuid-3.3.2" @@ -97253,7 +100872,7 @@ in }) sources."dashdash-1.14.1" sources."data-urls-1.1.0" - sources."debug-3.2.7" + sources."debug-0.7.4" sources."decode-uri-component-0.2.0" sources."decompress-response-4.2.1" sources."deep-extend-0.6.0" @@ -97426,6 +101045,7 @@ in sources."jmespath-0.15.0" sources."jpeg-js-0.4.3" sources."js-tokens-4.0.0" + sources."js-yaml-4.1.0" sources."jsbn-0.1.1" sources."jsdom-15.2.1" sources."json-schema-0.2.3" @@ -97463,7 +101083,9 @@ in sources."magicli-0.0.8" (sources."markdown-it-10.0.0" // { dependencies = [ + sources."argparse-1.0.10" sources."entities-2.0.3" + sources."sprintf-js-1.0.3" ]; }) sources."markdown-it-abbr-1.0.4" @@ -97476,9 +101098,11 @@ in sources."markdown-it-mark-3.0.1" (sources."markdown-it-multimd-table-4.1.1" // { dependencies = [ + sources."argparse-1.0.10" sources."entities-2.0.3" sources."linkify-it-3.0.3" sources."markdown-it-11.0.1" + sources."sprintf-js-1.0.3" ]; }) sources."markdown-it-sub-1.0.0" @@ -97488,8 +101112,8 @@ in sources."md5-file-4.0.0" sources."mdurl-1.0.1" sources."mermaid-8.13.3" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."mimic-response-2.1.0" sources."minimatch-3.0.4" sources."minimist-1.2.5" @@ -97510,7 +101134,11 @@ in sources."napi-build-utils-1.0.2" sources."ndarray-1.0.19" sources."ndarray-pack-1.2.1" - sources."needle-2.9.1" + (sources."needle-2.9.1" // { + dependencies = [ + sources."debug-3.2.7" + ]; + }) sources."nextgen-events-1.5.2" sources."no-case-2.3.2" (sources."node-abi-2.30.1" // { @@ -97541,6 +101169,7 @@ in sources."semver-5.7.1" ]; }) + sources."node-rsa-1.1.1" sources."nopt-4.0.3" sources."normalize-path-3.0.0" sources."npm-bundled-1.1.2" @@ -97618,7 +101247,7 @@ in ]; }) sources."requires-port-1.0.0" - sources."reselect-4.1.1" + sources."reselect-4.1.2" sources."resolve-url-0.2.1" sources."retry-0.10.1" sources."rimraf-2.7.1" @@ -97706,7 +101335,6 @@ in }) (sources."tcp-port-used-0.1.2" // { dependencies = [ - sources."debug-0.7.4" sources."q-0.9.7" ]; }) @@ -97866,7 +101494,7 @@ in sha512 = "sxKt7h0vzCd+3Y81Ey2qinupL6DpRSZJclS04ugHDNmRUXGzqicMJ6iwayhSA0S0DwwX30c5ozyUthr1QKF6uw=="; }; dependencies = [ - sources."@babel/parser-7.16.2" + sources."@babel/parser-7.16.3" sources."argparse-1.0.10" sources."bluebird-3.7.2" sources."catharsis-0.9.0" @@ -98029,8 +101657,8 @@ in sources."lodash-4.17.21" sources."methods-1.1.2" sources."mime-1.6.0" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."ms-2.1.3" sources."native-promise-only-0.8.1" sources."object-inspect-1.11.0" @@ -98181,8 +101809,8 @@ in }) sources."methods-1.1.2" sources."mime-1.6.0" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."mimic-response-1.0.1" sources."minimist-1.2.5" (sources."morgan-1.10.0" // { @@ -98326,7 +101954,7 @@ in sources."arr-union-3.1.0" sources."array-flatten-1.1.1" sources."array-unique-0.2.1" - sources."asn1-0.2.4" + sources."asn1-0.2.6" sources."assert-plus-1.0.0" sources."assign-symbols-1.0.0" sources."async-each-1.0.3" @@ -98561,8 +102189,8 @@ in sources."methods-1.1.2" sources."micromatch-2.3.11" sources."mime-1.6.0" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."minimist-1.2.5" (sources."mixin-deep-1.3.2" // { dependencies = [ @@ -99014,7 +102642,7 @@ in sources."has-symbols-1.0.2" sources."hyperlinker-1.0.0" sources."iconv-lite-0.4.24" - sources."ignore-5.1.8" + sources."ignore-5.1.9" sources."imurmurhash-0.1.4" sources."indent-string-4.0.0" sources."inquirer-7.3.3" @@ -99045,8 +102673,8 @@ in }) sources."merge2-1.4.1" sources."micromatch-4.0.4" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."mimic-fn-2.1.0" sources."moment-2.29.1" sources."ms-2.1.2" @@ -99149,16 +102777,16 @@ in karma = nodeEnv.buildNodePackage { name = "karma"; packageName = "karma"; - version = "6.3.7"; + version = "6.3.8"; src = fetchurl { - url = "https://registry.npmjs.org/karma/-/karma-6.3.7.tgz"; - sha512 = "EEkswZhOx3EFt1ELlVECeOXHONbHSGw6fkbeMxvCSkLD77X38Kb1d/Oup2Re9ep/tSoa1He3YIBf3Hp+9EsKtg=="; + url = "https://registry.npmjs.org/karma/-/karma-6.3.8.tgz"; + sha512 = "10wBBU9S0lBHhbCNfmmbWQaY5C1bXlKdnvzN2QKThujCI/+DKaezrI08l6bfTlpJ92VsEboq3zYKpXwK6DOi3A=="; }; dependencies = [ sources."@types/component-emitter-1.2.11" sources."@types/cookie-0.4.1" sources."@types/cors-2.8.12" - sources."@types/node-16.11.6" + sources."@types/node-16.11.7" sources."accepts-1.3.7" sources."ansi-regex-5.0.1" sources."ansi-styles-4.3.0" @@ -99191,7 +102819,7 @@ in sources."ee-first-1.1.1" sources."emoji-regex-8.0.0" sources."encodeurl-1.0.2" - (sources."engine.io-6.0.0" // { + (sources."engine.io-6.0.1" // { dependencies = [ sources."debug-4.3.2" sources."ms-2.1.2" @@ -99235,8 +102863,8 @@ in }) sources."media-typer-0.3.0" sources."mime-2.6.0" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."minimatch-3.0.4" sources."ms-2.0.0" sources."negotiator-0.6.2" @@ -99258,7 +102886,7 @@ in sources."rimraf-3.0.2" sources."safer-buffer-2.1.2" sources."setprototypeof-1.1.1" - (sources."socket.io-4.3.1" // { + (sources."socket.io-4.3.2" // { dependencies = [ sources."debug-4.3.2" sources."ms-2.1.2" @@ -99328,7 +102956,7 @@ in }) sources."@babel/generator-7.16.0" sources."@babel/helper-annotate-as-pure-7.16.0" - (sources."@babel/helper-compilation-targets-7.16.0" // { + (sources."@babel/helper-compilation-targets-7.16.3" // { dependencies = [ sources."semver-6.3.0" ]; @@ -99346,15 +102974,15 @@ in sources."@babel/helper-split-export-declaration-7.16.0" sources."@babel/helper-validator-identifier-7.15.7" sources."@babel/helper-validator-option-7.14.5" - sources."@babel/helpers-7.16.0" + sources."@babel/helpers-7.16.3" sources."@babel/highlight-7.16.0" sources."@babel/node-7.16.0" - sources."@babel/parser-7.16.2" + sources."@babel/parser-7.16.3" sources."@babel/plugin-syntax-jsx-7.16.0" sources."@babel/plugin-transform-react-jsx-7.16.0" sources."@babel/register-7.16.0" sources."@babel/template-7.16.0" - sources."@babel/traverse-7.16.0" + sources."@babel/traverse-7.16.3" sources."@babel/types-7.16.0" sources."@tootallnate/once-1.1.2" sources."@xmpp/base64-0.12.1" @@ -99421,7 +103049,7 @@ in sources."bytes-3.1.0" sources."bytesish-0.4.4" sources."call-bind-1.0.2" - sources."caniuse-lite-1.0.30001274" + sources."caniuse-lite-1.0.30001280" sources."caseless-0.12.0" sources."chalk-2.4.2" sources."chardet-1.4.0" @@ -99472,7 +103100,7 @@ in }) sources."dotenv-8.6.0" sources."ee-first-1.1.1" - sources."electron-to-chromium-1.3.887" + sources."electron-to-chromium-1.3.895" sources."emoji-regex-8.0.0" sources."encodeurl-1.0.2" sources."enquirer-2.3.6" @@ -99593,8 +103221,8 @@ in sources."merge-options-3.0.4" sources."methods-1.1.2" sources."mime-1.6.0" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."minimalistic-assert-1.0.1" sources."minimatch-3.0.4" sources."minimist-1.2.5" @@ -99847,7 +103475,7 @@ in sources."ajv-6.12.6" sources."ansi-regex-2.1.1" sources."ansi-styles-3.2.1" - sources."asn1-0.2.4" + sources."asn1-0.2.6" sources."assert-plus-1.0.0" sources."async-1.5.2" sources."asynckit-0.4.0" @@ -99949,8 +103577,8 @@ in sources."mimic-fn-2.1.0" ]; }) - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."mimic-fn-1.2.0" sources."minimatch-3.0.4" sources."minimist-0.0.8" @@ -100108,7 +103736,7 @@ in sources."ajv-6.12.6" sources."ansi-regex-2.1.1" sources."ansi-styles-3.2.1" - sources."asn1-0.2.4" + sources."asn1-0.2.6" sources."assert-plus-1.0.0" sources."async-1.5.2" sources."asynckit-0.4.0" @@ -100199,8 +103827,8 @@ in sources."locate-path-5.0.0" sources."lodash-4.17.21" sources."log-symbols-2.2.0" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."mimic-fn-1.2.0" sources."minimatch-3.0.4" sources."minimist-1.2.5" @@ -100515,7 +104143,7 @@ in sources."array-union-2.1.0" sources."arrify-2.0.1" sources."asap-2.0.6" - sources."asn1-0.2.4" + sources."asn1-0.2.6" sources."assert-plus-1.0.0" sources."asynckit-0.4.0" sources."at-least-node-1.0.0" @@ -100699,7 +104327,7 @@ in sources."human-signals-2.1.0" sources."humanize-ms-1.2.1" sources."iconv-lite-0.6.3" - sources."ignore-5.1.8" + sources."ignore-5.1.9" sources."ignore-walk-3.0.4" (sources."import-fresh-3.3.0" // { dependencies = [ @@ -100816,8 +104444,8 @@ in sources."merge-stream-2.0.0" sources."merge2-1.4.1" sources."micromatch-4.0.4" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."mimic-fn-2.1.0" sources."min-indent-1.0.1" sources."minimatch-3.0.4" @@ -101330,8 +104958,8 @@ in sources."map-visit-1.0.0" sources."micromatch-3.1.10" sources."mime-1.6.0" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."mixin-deep-1.3.2" sources."morgan-1.10.0" sources."ms-2.0.0" @@ -101518,7 +105146,7 @@ in sources."array-flatten-1.1.1" sources."array-unique-0.2.1" sources."arraybuffer.slice-0.0.7" - sources."asn1-0.2.4" + sources."asn1-0.2.6" sources."assert-plus-1.0.0" sources."assign-symbols-1.0.0" sources."async-each-1.0.3" @@ -101726,8 +105354,8 @@ in sources."methods-1.1.2" sources."micromatch-2.3.11" sources."mime-1.6.0" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."minimist-1.2.5" (sources."mixin-deep-1.3.2" // { dependencies = [ @@ -102028,7 +105656,7 @@ in sources."@babel/generator-7.16.0" sources."@babel/helper-annotate-as-pure-7.16.0" sources."@babel/helper-builder-binary-assignment-operator-visitor-7.16.0" - sources."@babel/helper-compilation-targets-7.16.0" + sources."@babel/helper-compilation-targets-7.16.3" sources."@babel/helper-create-class-features-plugin-7.16.0" sources."@babel/helper-create-regexp-features-plugin-7.16.0" sources."@babel/helper-define-polyfill-provider-0.2.4" @@ -102049,13 +105677,13 @@ in sources."@babel/helper-validator-identifier-7.15.7" sources."@babel/helper-validator-option-7.14.5" sources."@babel/helper-wrap-function-7.16.0" - sources."@babel/helpers-7.16.0" + sources."@babel/helpers-7.16.3" (sources."@babel/highlight-7.16.0" // { dependencies = [ sources."chalk-2.4.2" ]; }) - sources."@babel/parser-7.16.2" + sources."@babel/parser-7.16.3" sources."@babel/plugin-bugfix-safari-id-destructuring-collision-in-function-expression-7.16.2" sources."@babel/plugin-bugfix-v8-spread-parameters-in-optional-chaining-7.16.0" sources."@babel/plugin-external-helpers-7.8.3" @@ -102111,7 +105739,7 @@ in sources."@babel/plugin-transform-named-capturing-groups-regex-7.16.0" sources."@babel/plugin-transform-new-target-7.16.0" sources."@babel/plugin-transform-object-super-7.16.0" - sources."@babel/plugin-transform-parameters-7.16.0" + sources."@babel/plugin-transform-parameters-7.16.3" sources."@babel/plugin-transform-property-literals-7.16.0" sources."@babel/plugin-transform-regenerator-7.16.0" sources."@babel/plugin-transform-reserved-words-7.16.0" @@ -102126,9 +105754,9 @@ in sources."@babel/preset-env-7.16.0" sources."@babel/preset-modules-0.1.5" sources."@babel/preset-stage-2-7.8.3" - sources."@babel/runtime-7.16.0" + sources."@babel/runtime-7.16.3" sources."@babel/template-7.16.0" - sources."@babel/traverse-7.16.0" + sources."@babel/traverse-7.16.3" sources."@babel/types-7.16.0" sources."@cnakazawa/watch-1.0.4" sources."@comandeer/babel-plugin-banner-5.0.0" @@ -102150,7 +105778,7 @@ in sources."@types/istanbul-lib-report-3.0.0" sources."@types/istanbul-reports-1.1.2" sources."@types/json-schema-7.0.9" - sources."@types/node-16.11.6" + sources."@types/node-16.11.7" sources."@types/normalize-package-data-2.4.1" sources."@types/resolve-0.0.8" sources."@types/yargs-15.0.14" @@ -102193,7 +105821,7 @@ in sources."arr-flatten-1.1.0" sources."arr-union-3.1.0" sources."array-unique-0.3.2" - sources."asn1-0.2.4" + sources."asn1-0.2.6" (sources."asn1.js-5.4.1" // { dependencies = [ sources."bn.js-4.12.0" @@ -102323,7 +105951,7 @@ in sources."cached-path-relative-1.0.2" sources."call-bind-1.0.2" sources."camelcase-5.3.1" - sources."caniuse-lite-1.0.30001274" + sources."caniuse-lite-1.0.30001280" sources."capture-exit-2.0.0" sources."caseless-0.12.0" (sources."chalk-3.0.0" // { @@ -102446,7 +106074,7 @@ in sources."duplexer2-0.1.4" sources."duplexify-3.7.1" sources."ecc-jsbn-0.1.2" - sources."electron-to-chromium-1.3.887" + sources."electron-to-chromium-1.3.895" (sources."elliptic-6.5.4" // { dependencies = [ sources."bn.js-4.12.0" @@ -102708,8 +106336,8 @@ in sources."bn.js-4.12.0" ]; }) - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."minimalistic-assert-1.0.1" sources."minimalistic-crypto-utils-1.0.1" sources."minimatch-3.0.4" @@ -103184,7 +106812,7 @@ in sources."@types/commander-2.12.2" sources."@types/diff-3.5.4" sources."@types/get-stdin-5.0.1" - sources."@types/node-16.11.6" + sources."@types/node-16.11.7" sources."commander-2.20.3" sources."diff-3.5.0" sources."get-stdin-5.0.1" @@ -103234,6 +106862,188 @@ in bypassCache = true; reconstructLock = true; }; + manta = nodeEnv.buildNodePackage { + name = "manta"; + packageName = "manta"; + version = "5.2.3"; + src = fetchurl { + url = "https://registry.npmjs.org/manta/-/manta-5.2.3.tgz"; + sha512 = "dO6YemmfLxQt6atbXp0LP9lDlsDgDlr8T8GRouHSXfaE9rxRIr5f7XUvzWH8QOLgb40Jyt/lpacJQoJzm1OeCA=="; + }; + dependencies = [ + sources."ansi-regex-2.1.1" + sources."asn1-0.2.6" + sources."assert-plus-1.0.0" + sources."backoff-2.3.0" + sources."balanced-match-1.0.2" + sources."bcrypt-pbkdf-1.0.2" + sources."block-stream-0.0.9" + sources."brace-expansion-1.1.11" + sources."bunyan-1.8.15" + sources."camelcase-2.1.1" + sources."cliui-3.2.0" + sources."clone-0.1.19" + sources."cmdln-4.1.2" + sources."code-point-at-1.1.0" + sources."concat-map-0.0.1" + sources."core-util-is-1.0.2" + sources."dashdash-1.14.1" + sources."decamelize-1.2.0" + sources."dtrace-provider-0.8.8" + sources."ecc-jsbn-0.1.2" + sources."extsprintf-1.4.1" + sources."fast-safe-stringify-1.2.3" + sources."fstream-1.0.12" + sources."fuzzyset.js-0.0.1" + sources."getpass-0.1.7" + sources."glob-6.0.4" + sources."graceful-fs-4.2.8" + sources."hogan.js-2.0.0" + sources."http-signature-1.3.5" + sources."inflight-1.0.6" + sources."inherits-2.0.4" + sources."invert-kv-1.0.0" + sources."is-fullwidth-code-point-1.0.0" + sources."isarray-0.0.1" + sources."jsbn-0.1.1" + sources."json-schema-0.2.3" + (sources."jsprim-1.4.1" // { + dependencies = [ + sources."extsprintf-1.3.0" + sources."verror-1.10.0" + ]; + }) + sources."keep-alive-agent-0.0.1" + sources."lcid-1.0.0" + sources."lodash-4.17.21" + (sources."lomstream-1.1.1" // { + dependencies = [ + sources."assert-plus-0.1.5" + sources."extsprintf-1.3.0" + ]; + }) + sources."lru-cache-4.1.5" + sources."lstream-0.0.4" + sources."mime-1.2.11" + sources."minimatch-3.0.4" + sources."minimist-1.2.5" + sources."mkdirp-0.5.5" + sources."moment-2.29.1" + (sources."mooremachine-2.3.0" // { + dependencies = [ + sources."assert-plus-0.2.0" + ]; + }) + sources."mv-2.1.1" + sources."nan-2.15.0" + sources."ncp-2.0.0" + sources."number-is-nan-1.0.1" + sources."once-1.4.0" + sources."os-locale-1.4.0" + sources."path-is-absolute-1.0.1" + sources."path-platform-0.0.1" + sources."precond-0.2.3" + sources."process-nextick-args-2.0.1" + (sources."progbar-1.2.1" // { + dependencies = [ + sources."readable-stream-1.0.34" + ]; + }) + sources."pseudomap-1.0.2" + sources."readable-stream-1.1.14" + (sources."restify-clients-1.6.0" // { + dependencies = [ + sources."backoff-2.5.0" + sources."mime-1.6.0" + sources."uuid-3.4.0" + ]; + }) + (sources."restify-errors-3.1.0" // { + dependencies = [ + sources."assert-plus-0.2.0" + sources."lodash-3.10.1" + ]; + }) + sources."rimraf-2.4.5" + sources."safe-buffer-5.2.1" + sources."safe-json-stringify-1.2.0" + sources."safer-buffer-2.1.2" + sources."semver-5.7.1" + sources."showdown-1.4.4" + (sources."smartdc-auth-2.5.8" // { + dependencies = [ + sources."bunyan-1.8.12" + sources."clone-0.1.5" + (sources."dashdash-1.10.1" // { + dependencies = [ + sources."assert-plus-0.1.5" + ]; + }) + sources."extsprintf-1.0.0" + sources."json-schema-0.2.2" + (sources."jsprim-0.3.0" // { + dependencies = [ + sources."verror-1.3.3" + ]; + }) + sources."once-1.3.0" + sources."vasync-1.4.3" + sources."verror-1.1.0" + ]; + }) + sources."sshpk-1.16.1" + (sources."sshpk-agent-1.8.1" // { + dependencies = [ + sources."isarray-1.0.0" + sources."readable-stream-2.3.7" + sources."safe-buffer-5.1.2" + sources."string_decoder-1.1.1" + ]; + }) + sources."string-width-1.0.2" + sources."string_decoder-0.10.31" + sources."strip-ansi-3.0.1" + sources."strsplit-1.0.0" + sources."tar-2.2.2" + sources."tunnel-agent-0.6.0" + sources."tweetnacl-0.14.5" + sources."util-deprecate-1.0.2" + sources."uuid-2.0.3" + (sources."vasync-1.6.4" // { + dependencies = [ + sources."extsprintf-1.2.0" + sources."verror-1.6.0" + ]; + }) + sources."verror-1.10.1" + (sources."vstream-0.1.0" // { + dependencies = [ + sources."assert-plus-0.1.5" + sources."extsprintf-1.2.0" + ]; + }) + (sources."watershed-0.3.4" // { + dependencies = [ + sources."readable-stream-1.0.2" + ]; + }) + sources."window-size-0.1.4" + sources."wrap-ansi-2.1.0" + sources."wrappy-1.0.2" + sources."y18n-3.2.2" + sources."yallist-2.1.2" + sources."yargs-3.32.0" + ]; + buildInputs = globalBuildInputs; + meta = { + description = "Manta Client API"; + homepage = "http://apidocs.joyent.com/manta"; + license = "MIT"; + }; + production = true; + bypassCache = true; + reconstructLock = true; + }; markdownlint-cli = nodeEnv.buildNodePackage { name = "markdownlint-cli"; packageName = "markdownlint-cli"; @@ -103253,7 +107063,7 @@ in sources."fs.realpath-1.0.0" sources."get-stdin-8.0.0" sources."glob-7.2.0" - sources."ignore-5.1.8" + sources."ignore-5.1.9" sources."inflight-1.0.6" sources."inherits-2.0.4" sources."ini-2.0.0" @@ -103285,6 +107095,61 @@ in bypassCache = true; reconstructLock = true; }; + markdownlint-cli2 = nodeEnv.buildNodePackage { + name = "markdownlint-cli2"; + packageName = "markdownlint-cli2"; + version = "0.3.2"; + src = fetchurl { + url = "https://registry.npmjs.org/markdownlint-cli2/-/markdownlint-cli2-0.3.2.tgz"; + sha512 = "Wj4iQy2J49m9CVkWkLTdFxMTPDqD3AyL3NbLQgz/nUnTu8LnDguFCbQtFhdzQPvncHVjrKT2vYqg7DifzVP4tA=="; + }; + dependencies = [ + sources."@nodelib/fs.scandir-2.1.5" + sources."@nodelib/fs.stat-2.0.5" + sources."@nodelib/fs.walk-1.2.8" + sources."argparse-2.0.1" + sources."array-union-2.1.0" + sources."braces-3.0.2" + sources."dir-glob-3.0.1" + sources."entities-2.1.0" + sources."fast-glob-3.2.7" + sources."fastq-1.13.0" + sources."fill-range-7.0.1" + sources."glob-parent-5.1.2" + sources."globby-11.0.4" + sources."ignore-5.1.9" + sources."is-extglob-2.1.1" + sources."is-glob-4.0.3" + sources."is-number-7.0.0" + sources."linkify-it-3.0.3" + sources."markdown-it-12.2.0" + sources."markdownlint-0.24.0" + sources."markdownlint-cli2-formatter-default-0.0.2" + sources."markdownlint-rule-helpers-0.15.0" + sources."mdurl-1.0.1" + sources."merge2-1.4.1" + sources."micromatch-4.0.4" + sources."path-type-4.0.0" + sources."picomatch-2.3.0" + sources."queue-microtask-1.2.3" + sources."reusify-1.0.4" + sources."run-parallel-1.2.0" + sources."slash-3.0.0" + sources."strip-json-comments-3.1.1" + sources."to-regex-range-5.0.1" + sources."uc.micro-1.0.6" + sources."yaml-1.10.2" + ]; + buildInputs = globalBuildInputs; + meta = { + description = "A fast, flexible, configuration-based command-line interface for linting Markdown/CommonMark files with the `markdownlint` library"; + homepage = "https://github.com/DavidAnson/markdownlint-cli2"; + license = "MIT"; + }; + production = true; + bypassCache = true; + reconstructLock = true; + }; markdown-link-check = nodeEnv.buildNodePackage { name = "markdown-link-check"; packageName = "markdown-link-check"; @@ -103296,7 +107161,7 @@ in dependencies = [ sources."ajv-6.12.6" sources."ansi-styles-4.3.0" - sources."asn1-0.2.4" + sources."asn1-0.2.6" sources."assert-plus-1.0.0" sources."async-3.2.2" sources."asynckit-0.4.0" @@ -103338,8 +107203,8 @@ in sources."lodash-4.17.21" sources."markdown-link-extractor-1.3.0" sources."marked-2.1.3" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."ms-2.1.3" sources."oauth-sign-0.9.0" sources."performance-now-2.1.0" @@ -103425,8 +107290,8 @@ in sources."isstream-0.1.2" sources."lodash-4.17.21" sources."log4js-3.0.6" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."minimist-1.2.5" sources."mkdirp-0.5.5" sources."ms-2.1.3" @@ -103509,7 +107374,7 @@ in sources."argparse-1.0.10" sources."array-differ-1.0.0" sources."array-uniq-1.0.3" - sources."asn1-0.2.4" + sources."asn1-0.2.6" sources."assert-plus-1.0.0" sources."asynckit-0.4.0" sources."aws-sign2-0.7.0" @@ -103637,7 +107502,7 @@ in sources."is-core-module-2.8.0" sources."is-fullwidth-code-point-1.0.0" sources."is-my-ip-valid-1.0.0" - sources."is-my-json-valid-2.20.5" + sources."is-my-json-valid-2.20.6" sources."is-property-1.0.2" sources."is-resolvable-1.1.0" sources."is-typedarray-1.0.0" @@ -103651,7 +107516,7 @@ in sources."json-stable-stringify-1.0.1" sources."json-stringify-safe-5.0.1" sources."jsonify-0.0.0" - sources."jsonpointer-4.1.0" + sources."jsonpointer-5.0.0" sources."jsprim-1.4.1" sources."levn-0.3.0" sources."lodash-4.17.21" @@ -103673,8 +107538,8 @@ in sources."lodash.templatesettings-3.1.1" sources."mastodon-api-1.3.0" sources."mime-1.6.0" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."minimatch-3.0.4" sources."minimist-1.2.5" sources."mkdirp-0.5.5" @@ -103849,7 +107714,7 @@ in }; dependencies = [ sources."@braintree/sanitize-url-3.1.0" - sources."@types/node-16.11.6" + sources."@types/node-16.11.7" sources."@types/yauzl-2.9.2" sources."agent-base-6.0.2" sources."ansi-styles-4.3.0" @@ -104153,8 +108018,8 @@ in sources."lodash-4.17.21" sources."methods-1.1.2" sources."mime-1.6.0" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."ms-2.1.3" sources."native-promise-only-0.8.1" sources."object-inspect-1.11.0" @@ -104345,10 +108210,10 @@ in node-gyp = nodeEnv.buildNodePackage { name = "node-gyp"; packageName = "node-gyp"; - version = "8.3.0"; + version = "8.4.0"; src = fetchurl { - url = "https://registry.npmjs.org/node-gyp/-/node-gyp-8.3.0.tgz"; - sha512 = "e+vmKyTiybKgrmvs4M2REFKCnOd+NcrAAnn99Yko6NQA+zZdMlRvbIUHojfsHrSQ1CddLgZnHicnEVgDHziJzA=="; + url = "https://registry.npmjs.org/node-gyp/-/node-gyp-8.4.0.tgz"; + sha512 = "Bi/oCm5bH6F+FmzfUxJpPaxMEyIhszULGR3TprmTeku8/dMFcdTcypk120NeZqEt54r1BrgEKtm2jJiuIKE28Q=="; }; dependencies = [ sources."@gar/promisify-1.1.2" @@ -104491,7 +108356,7 @@ in sources."are-we-there-yet-1.1.7" sources."array-find-index-1.0.2" sources."array-flatten-1.1.1" - sources."asn1-0.2.4" + sources."asn1-0.2.6" sources."assert-plus-0.2.0" sources."async-0.9.2" sources."asynckit-0.4.0" @@ -104501,7 +108366,7 @@ in sources."base64-js-0.0.8" sources."bcrypt-pbkdf-1.0.2" sources."biased-opener-0.2.8" - sources."big-integer-1.6.50" + sources."big-integer-1.6.51" sources."block-stream-0.0.9" sources."body-parser-1.19.0" sources."boom-2.10.1" @@ -104613,8 +108478,8 @@ in sources."merge-descriptors-1.0.1" sources."methods-1.1.2" sources."mime-1.6.0" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."minimatch-3.0.4" sources."minimist-1.2.5" sources."mkdirp-0.5.5" @@ -104870,7 +108735,7 @@ in sha512 = "IRpc8+1CR3jeZQOSX+iAE7ggu/sRfVsv6Cp/flRElIyhuZeFanbsU319KOIPnfuqF4ijwPiwWFj2zjtDllN++Q=="; }; dependencies = [ - sources."@babel/runtime-7.16.0" + sources."@babel/runtime-7.16.3" sources."@mapbox/node-pre-gyp-1.0.6" sources."@node-red/editor-api-2.1.3" sources."@node-red/editor-client-2.1.3" @@ -104895,7 +108760,7 @@ in sources."@types/cacheable-request-6.0.2" sources."@types/http-cache-semantics-4.0.1" sources."@types/keyv-3.1.3" - sources."@types/node-16.11.6" + sources."@types/node-16.11.7" sources."@types/responselike-1.0.0" sources."abbrev-1.1.1" sources."accepts-1.3.7" @@ -105107,8 +108972,8 @@ in sources."merge-descriptors-1.0.1" sources."methods-1.1.2" sources."mime-2.5.2" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."mimic-response-1.0.1" sources."minimatch-3.0.4" sources."minimist-1.2.5" @@ -105276,7 +109141,7 @@ in sources."ansi-regex-2.1.1" sources."aproba-1.2.0" sources."are-we-there-yet-1.1.7" - sources."asn1-0.2.4" + sources."asn1-0.2.6" sources."assert-plus-1.0.0" sources."asynckit-0.4.0" sources."aws-sign2-0.7.0" @@ -105347,8 +109212,8 @@ in sources."jsonfile-1.0.1" sources."jsprim-1.4.1" sources."lru-cache-6.0.0" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."minimatch-3.0.4" sources."minimist-1.2.5" sources."minipass-3.1.5" @@ -105463,10 +109328,10 @@ in nodemon = nodeEnv.buildNodePackage { name = "nodemon"; packageName = "nodemon"; - version = "2.0.14"; + version = "2.0.15"; src = fetchurl { - url = "https://registry.npmjs.org/nodemon/-/nodemon-2.0.14.tgz"; - sha512 = "frcpDx+PviKEQRSYzwhckuO2zoHcBYLHI754RE9z5h1RGtrngerc04mLpQQCPWBkH/2ObrX7We9YiwVSYZpFJQ=="; + url = "https://registry.npmjs.org/nodemon/-/nodemon-2.0.15.tgz"; + sha512 = "gdHMNx47Gw7b3kWxJV64NI+Q5nfl0y5DgDbiVtShiwa7Z0IZ07Ll4RLFo6AjrhzMtoEZn5PDE3/c2AbVsiCkpA=="; }; dependencies = [ sources."@sindresorhus/is-0.14.0" @@ -105653,7 +109518,7 @@ in sources."@types/http-cache-semantics-4.0.1" sources."@types/keyv-3.1.3" sources."@types/minimist-1.2.2" - sources."@types/node-16.11.6" + sources."@types/node-16.11.7" sources."@types/normalize-package-data-2.4.1" sources."@types/parse-json-4.0.0" sources."@types/responselike-1.0.0" @@ -105777,7 +109642,7 @@ in sources."http-cache-semantics-4.1.0" sources."human-signals-2.1.0" sources."iconv-lite-0.4.24" - sources."ignore-5.1.8" + sources."ignore-5.1.9" sources."ignore-walk-3.0.4" sources."import-fresh-3.3.0" sources."import-lazy-2.1.0" @@ -106144,10 +110009,10 @@ in npm = nodeEnv.buildNodePackage { name = "npm"; packageName = "npm"; - version = "8.1.2"; + version = "8.1.3"; src = fetchurl { - url = "https://registry.npmjs.org/npm/-/npm-8.1.2.tgz"; - sha512 = "9awPeSZ+3sS4cBwGsJQnbt3M+ZyBRBokEJYdm2nmu9n8HSuGEEOR1cLy7NLB08veoj21I6ZtMhwM1ARz6HWYHg=="; + url = "https://registry.npmjs.org/npm/-/npm-8.1.3.tgz"; + sha512 = "7AnYyaVdF3vEpHMb+tq5ALbmsE9CIJYu0KJvGawn03yc1HGw778H7UNLV2tcHTAa6VjJk4c1yKbovOC0674PAw=="; }; buildInputs = globalBuildInputs; meta = { @@ -106162,10 +110027,10 @@ in npm-check-updates = nodeEnv.buildNodePackage { name = "npm-check-updates"; packageName = "npm-check-updates"; - version = "11.8.5"; + version = "12.0.2"; src = fetchurl { - url = "https://registry.npmjs.org/npm-check-updates/-/npm-check-updates-11.8.5.tgz"; - sha512 = "IYSHjlWe8UEugDy7X0qjBeJwcni4DlcWdBK4QQEbwgkNlEDlXyd4yQJYWFumKaJzrp/n5/EcvaboXsBD1Er/pw=="; + url = "https://registry.npmjs.org/npm-check-updates/-/npm-check-updates-12.0.2.tgz"; + sha512 = "VzMNuUXqRta1qpBkFiE0hKfpOGP2FbYwpBBTcJXoJWppOPBSi/paWFVhPVWf7PgRoDWegK+PDAWKhIvhyrBrIg=="; }; dependencies = [ sources."@gar/promisify-1.1.2" @@ -106178,7 +110043,7 @@ in sources."@npmcli/move-file-1.1.2" sources."@npmcli/node-gyp-1.0.3" sources."@npmcli/promise-spawn-1.3.2" - sources."@npmcli/run-script-1.8.6" + sources."@npmcli/run-script-2.0.0" sources."@sindresorhus/is-0.14.0" sources."@szmarczak/http-timer-1.1.2" sources."@tootallnate/once-1.1.2" @@ -106186,7 +110051,6 @@ in sources."agent-base-6.0.2" sources."agentkeepalive-4.1.4" sources."aggregate-error-3.1.0" - sources."ajv-6.12.6" (sources."ansi-align-3.0.1" // { dependencies = [ sources."ansi-regex-5.0.1" @@ -106201,13 +110065,7 @@ in sources."are-we-there-yet-1.1.7" sources."argparse-2.0.1" sources."array-union-2.1.0" - sources."asn1-0.2.4" - sources."assert-plus-1.0.0" - sources."asynckit-0.4.0" - sources."aws-sign2-0.7.0" - sources."aws4-1.11.0" sources."balanced-match-1.0.2" - sources."bcrypt-pbkdf-1.0.2" (sources."boxen-5.1.2" // { dependencies = [ sources."ansi-regex-5.0.1" @@ -106218,6 +110076,7 @@ in }) sources."brace-expansion-1.1.11" sources."braces-3.0.2" + sources."buffer-from-1.1.2" sources."builtins-1.0.3" sources."cacache-15.3.0" (sources."cacheable-request-6.1.0" // { @@ -106227,7 +110086,6 @@ in ]; }) sources."camelcase-6.2.0" - sources."caseless-0.12.0" sources."chalk-4.1.2" sources."chownr-2.0.0" sources."ci-info-2.0.0" @@ -106240,50 +110098,39 @@ in sources."color-convert-2.0.1" sources."color-name-1.1.4" sources."colors-1.0.3" - sources."combined-stream-1.0.8" sources."commander-6.2.1" sources."concat-map-0.0.1" sources."configstore-5.0.1" sources."console-control-strings-1.1.0" sources."core-util-is-1.0.3" sources."crypto-random-string-2.0.0" - sources."dashdash-1.14.1" sources."debug-4.3.2" sources."decompress-response-3.3.0" sources."deep-extend-0.6.0" sources."defer-to-connect-1.1.3" - sources."delayed-stream-1.0.0" sources."delegates-1.0.0" sources."depd-1.1.2" sources."dir-glob-3.0.1" sources."dot-prop-5.3.0" sources."duplexer3-0.1.4" - sources."ecc-jsbn-0.1.2" sources."emoji-regex-8.0.0" sources."encoding-0.1.13" sources."end-of-stream-1.4.4" sources."env-paths-2.2.1" sources."err-code-2.0.3" sources."escape-goat-2.1.1" - sources."extend-3.0.2" - sources."extsprintf-1.3.0" - sources."fast-deep-equal-3.1.3" sources."fast-glob-3.2.7" - sources."fast-json-stable-stringify-2.1.0" sources."fast-memoize-2.5.2" sources."fastq-1.13.0" sources."figgy-pudding-3.5.2" sources."fill-range-7.0.1" sources."find-up-5.0.0" - sources."forever-agent-0.6.1" - sources."form-data-2.3.3" sources."fp-and-or-0.1.3" sources."fs-minipass-2.1.0" sources."fs.realpath-1.0.0" sources."gauge-2.7.4" sources."get-stdin-8.0.0" sources."get-stream-4.1.0" - sources."getpass-0.1.7" sources."glob-7.2.0" sources."glob-parent-5.1.2" (sources."global-dirs-3.0.0" // { @@ -106294,20 +110141,17 @@ in sources."globby-11.0.4" sources."got-9.6.0" sources."graceful-fs-4.2.8" - sources."har-schema-2.0.0" - sources."har-validator-5.1.5" sources."has-flag-4.0.0" sources."has-unicode-2.0.1" sources."has-yarn-2.1.0" sources."hosted-git-info-4.0.2" sources."http-cache-semantics-4.1.0" sources."http-proxy-agent-4.0.1" - sources."http-signature-1.2.0" sources."https-proxy-agent-5.0.0" sources."humanize-ms-1.2.1" sources."iconv-lite-0.6.3" - sources."ignore-5.1.8" - sources."ignore-walk-3.0.4" + sources."ignore-5.1.9" + sources."ignore-walk-4.0.1" sources."import-lazy-2.1.0" sources."imurmurhash-0.1.4" sources."indent-string-4.0.0" @@ -106330,20 +110174,14 @@ in sources."is-yarn-global-0.3.0" sources."isarray-1.0.0" sources."isexe-2.0.0" - sources."isstream-0.1.2" sources."jju-1.4.0" sources."js-yaml-4.1.0" - sources."jsbn-0.1.1" sources."json-buffer-3.0.0" sources."json-parse-even-better-errors-2.3.1" sources."json-parse-helpfulerror-1.0.3" - sources."json-schema-0.2.3" - sources."json-schema-traverse-0.4.1" - sources."json-stringify-safe-5.0.1" sources."json5-2.2.0" sources."jsonlines-0.1.1" sources."jsonparse-1.3.1" - sources."jsprim-1.4.1" sources."keyv-3.1.0" sources."kleur-3.0.3" sources."latest-version-5.1.0" @@ -106368,8 +110206,6 @@ in sources."make-fetch-happen-9.1.0" sources."merge2-1.4.1" sources."micromatch-4.0.4" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" sources."mimic-response-1.0.1" sources."minimatch-3.0.4" sources."minimist-1.2.5" @@ -106384,19 +110220,18 @@ in sources."mkdirp-1.0.4" sources."ms-2.1.2" sources."negotiator-0.6.2" - sources."node-gyp-7.1.2" + sources."node-gyp-8.4.0" sources."nopt-5.0.0" sources."normalize-url-4.5.1" sources."npm-bundled-1.1.2" sources."npm-install-checks-4.0.0" sources."npm-normalize-package-bin-1.0.1" sources."npm-package-arg-8.1.5" - sources."npm-packlist-2.2.2" + sources."npm-packlist-3.0.0" sources."npm-pick-manifest-6.1.1" sources."npm-registry-fetch-11.0.0" sources."npmlog-4.1.2" sources."number-is-nan-1.0.1" - sources."oauth-sign-0.9.0" sources."object-assign-4.1.1" sources."once-1.4.0" sources."p-cancelable-1.1.0" @@ -106409,12 +110244,11 @@ in sources."semver-6.3.0" ]; }) - sources."pacote-11.3.5" + sources."pacote-12.0.2" sources."parse-github-url-1.0.2" sources."path-exists-4.0.0" sources."path-is-absolute-1.0.1" sources."path-type-4.0.0" - sources."performance-now-2.1.0" sources."picomatch-2.3.0" sources."prepend-http-2.0.0" sources."process-nextick-args-2.0.1" @@ -106422,11 +110256,8 @@ in sources."promise-inflight-1.0.1" sources."promise-retry-2.0.1" sources."prompts-2.4.2" - sources."psl-1.8.0" sources."pump-3.0.0" - sources."punycode-2.1.1" sources."pupa-2.1.1" - sources."qs-6.5.2" sources."queue-microtask-1.2.3" sources."rc-1.2.8" sources."rc-config-loader-4.0.0" @@ -106435,7 +110266,6 @@ in sources."registry-auth-token-4.2.1" sources."registry-url-5.1.0" sources."remote-git-tags-3.0.0" - sources."request-2.88.2" sources."require-from-string-2.0.2" sources."responselike-1.0.2" sources."retry-0.12.0" @@ -106458,8 +110288,9 @@ in sources."smart-buffer-4.2.0" sources."socks-2.6.1" sources."socks-proxy-agent-6.1.0" + sources."source-map-0.6.1" + sources."source-map-support-0.5.20" sources."spawn-please-1.0.0" - sources."sshpk-1.16.1" sources."ssri-8.0.1" sources."string-width-1.0.2" sources."string_decoder-1.1.1" @@ -106469,25 +110300,15 @@ in sources."tar-6.1.11" sources."to-readable-stream-1.0.0" sources."to-regex-range-5.0.1" - sources."tough-cookie-2.5.0" - sources."tunnel-agent-0.6.0" - sources."tweetnacl-0.14.5" sources."type-fest-0.20.2" sources."typedarray-to-buffer-3.1.5" sources."unique-filename-1.1.1" sources."unique-slug-2.0.2" sources."unique-string-2.0.0" sources."update-notifier-5.1.0" - sources."uri-js-4.4.1" sources."url-parse-lax-3.0.0" sources."util-deprecate-1.0.2" - sources."uuid-3.4.0" sources."validate-npm-package-name-3.0.0" - (sources."verror-1.10.0" // { - dependencies = [ - sources."core-util-is-1.0.2" - ]; - }) sources."which-2.0.2" sources."wide-align-1.1.5" (sources."widest-line-3.1.0" // { @@ -106556,7 +110377,7 @@ in sources."aproba-2.0.0" sources."are-we-there-yet-2.0.0" sources."argparse-0.1.15" - sources."asn1-0.2.4" + sources."asn1-0.2.6" sources."assert-plus-1.0.0" sources."asynckit-0.4.0" sources."aws-sign2-0.7.0" @@ -106624,8 +110445,8 @@ in sources."json-stringify-safe-5.0.1" sources."jsonfile-1.0.1" sources."jsprim-1.4.1" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."minimatch-3.0.4" sources."minimist-1.2.5" sources."mkdirp-0.3.5" @@ -106769,7 +110590,7 @@ in }) sources."@babel/helper-annotate-as-pure-7.16.0" sources."@babel/helper-builder-binary-assignment-operator-visitor-7.16.0" - (sources."@babel/helper-compilation-targets-7.16.0" // { + (sources."@babel/helper-compilation-targets-7.16.3" // { dependencies = [ sources."semver-6.3.0" ]; @@ -106798,9 +110619,9 @@ in sources."@babel/helper-validator-identifier-7.15.7" sources."@babel/helper-validator-option-7.14.5" sources."@babel/helper-wrap-function-7.16.0" - sources."@babel/helpers-7.16.0" + sources."@babel/helpers-7.16.3" sources."@babel/highlight-7.16.0" - sources."@babel/parser-7.16.2" + sources."@babel/parser-7.16.3" sources."@babel/plugin-bugfix-safari-id-destructuring-collision-in-function-expression-7.16.2" sources."@babel/plugin-bugfix-v8-spread-parameters-in-optional-chaining-7.16.0" sources."@babel/plugin-proposal-async-generator-functions-7.16.0" @@ -106856,7 +110677,7 @@ in sources."@babel/plugin-transform-named-capturing-groups-regex-7.16.0" sources."@babel/plugin-transform-new-target-7.16.0" sources."@babel/plugin-transform-object-super-7.16.0" - sources."@babel/plugin-transform-parameters-7.16.0" + sources."@babel/plugin-transform-parameters-7.16.3" sources."@babel/plugin-transform-property-literals-7.16.0" sources."@babel/plugin-transform-react-jsx-7.16.0" sources."@babel/plugin-transform-regenerator-7.16.0" @@ -106874,9 +110695,9 @@ in ]; }) sources."@babel/preset-modules-0.1.5" - sources."@babel/runtime-7.16.0" + sources."@babel/runtime-7.16.3" sources."@babel/template-7.16.0" - sources."@babel/traverse-7.16.0" + sources."@babel/traverse-7.16.3" sources."@babel/types-7.16.0" sources."@iarna/toml-2.2.5" sources."@mrmlnc/readdir-enhanced-2.2.1" @@ -106911,7 +110732,7 @@ in sources."arr-union-3.1.0" sources."array-equal-1.0.0" sources."array-unique-0.3.2" - sources."asn1-0.2.4" + sources."asn1-0.2.6" (sources."asn1.js-5.4.1" // { dependencies = [ sources."bn.js-4.12.0" @@ -106999,7 +110820,7 @@ in sources."caller-path-2.0.0" sources."callsites-2.0.0" sources."caniuse-api-3.0.0" - sources."caniuse-lite-1.0.30001274" + sources."caniuse-lite-1.0.30001280" sources."caseless-0.12.0" sources."chalk-2.4.2" sources."chokidar-2.1.8" @@ -107081,7 +110902,7 @@ in sources."cssstyle-1.4.0" sources."dashdash-1.14.1" sources."data-urls-1.1.0" - sources."deasync-0.1.23" + sources."deasync-0.1.24" sources."debug-4.3.2" sources."decode-uri-component-0.2.0" sources."deep-is-0.1.4" @@ -107136,7 +110957,7 @@ in sources."duplexer2-0.1.4" sources."ecc-jsbn-0.1.2" sources."ee-first-1.1.1" - sources."electron-to-chromium-1.3.887" + sources."electron-to-chromium-1.3.895" (sources."elliptic-6.5.4" // { dependencies = [ sources."bn.js-4.12.0" @@ -107372,8 +111193,8 @@ in ]; }) sources."mime-1.6.0" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."mimic-fn-1.2.0" sources."minimalistic-assert-1.0.1" sources."minimalistic-crypto-utils-1.0.1" @@ -107792,7 +111613,7 @@ in sources."argparse-1.0.10" sources."array-flatten-1.1.1" sources."asap-2.0.6" - sources."asn1-0.2.4" + sources."asn1-0.2.6" sources."assert-plus-1.0.0" sources."async-0.9.2" sources."asynckit-0.4.0" @@ -107923,8 +111744,8 @@ in sources."merge-descriptors-1.0.1" sources."methods-1.1.2" sources."mime-1.6.0" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."minimatch-3.0.4" sources."minimist-1.2.5" sources."mkdirp-0.5.5" @@ -108152,7 +111973,7 @@ in sources."base64-js-0.0.8" sources."bencode-2.0.2" sources."bep53-range-1.1.1" - sources."big-integer-1.6.50" + sources."big-integer-1.6.51" sources."bitfield-0.1.0" (sources."bittorrent-dht-6.4.2" // { dependencies = [ @@ -108343,8 +112164,9 @@ in sources."process-nextick-args-2.0.1" sources."pump-2.0.1" sources."queue-microtask-1.2.3" + sources."queue-tick-1.0.0" sources."random-access-file-2.2.0" - sources."random-access-storage-1.4.1" + sources."random-access-storage-1.4.2" sources."random-iterate-1.0.1" sources."randombytes-2.1.0" sources."range-parser-1.2.1" @@ -108461,7 +112283,7 @@ in }) sources."array-flatten-1.1.1" sources."arraybuffer.slice-0.0.7" - sources."asn1-0.2.4" + sources."asn1-0.2.6" sources."assert-plus-1.0.0" sources."async-2.6.3" sources."asynckit-0.4.0" @@ -108633,8 +112455,8 @@ in sources."merge-descriptors-1.0.1" sources."methods-1.1.2" sources."mime-1.6.0" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."mimic-response-1.0.1" sources."minimatch-3.0.4" sources."minimist-1.2.5" @@ -108688,8 +112510,9 @@ in sources."punycode-2.1.1" sources."qs-6.7.0" sources."queue-microtask-1.2.3" + sources."queue-tick-1.0.0" sources."random-access-file-2.2.0" - sources."random-access-storage-1.4.1" + sources."random-access-storage-1.4.2" sources."random-bytes-1.0.0" sources."random-iterate-1.0.1" sources."randombytes-2.1.0" @@ -108892,7 +112715,7 @@ in sources."has-unicode-2.0.1" sources."https-proxy-agent-5.0.0" sources."ieee754-1.2.1" - sources."ignore-5.1.8" + sources."ignore-5.1.9" sources."inherits-2.0.4" sources."ini-1.3.8" sources."into-stream-6.0.0" @@ -109136,7 +112959,7 @@ in sources."mkdirp-1.0.4" sources."module-details-from-path-1.0.3" sources."moment-2.29.1" - sources."moment-timezone-0.5.33" + sources."moment-timezone-0.5.34" sources."ms-2.1.2" sources."mute-stream-0.0.8" (sources."needle-2.4.0" // { @@ -109197,7 +113020,7 @@ in sources."statuses-1.5.0" sources."string_decoder-0.10.31" sources."supports-color-7.2.0" - sources."systeminformation-5.9.9" + sources."systeminformation-5.9.11" sources."to-regex-range-5.0.1" sources."toidentifier-1.0.0" sources."tslib-2.3.1" @@ -109233,10 +113056,10 @@ in pnpm = nodeEnv.buildNodePackage { name = "pnpm"; packageName = "pnpm"; - version = "6.20.1"; + version = "6.21.1"; src = fetchurl { - url = "https://registry.npmjs.org/pnpm/-/pnpm-6.20.1.tgz"; - sha512 = "Yoaw5M3zq4Bh7biOeF6zurnoixtFB7EjCQd4dPYoHnGPafwawy/thcCg0Ady8CKyBYXu35VnkEgP/DXE3A84bA=="; + url = "https://registry.npmjs.org/pnpm/-/pnpm-6.21.1.tgz"; + sha512 = "cekH8bFgZbHerGsmW4JYY5bi0jYyi/K7WZpSf8TQFlP3Kxc50KhCwNWPUzgLVImYyX8SCJcVhyNOoYQKDnmYCw=="; }; buildInputs = globalBuildInputs; meta = { @@ -109302,10 +113125,10 @@ in postcss-cli = nodeEnv.buildNodePackage { name = "postcss-cli"; packageName = "postcss-cli"; - version = "9.0.1"; + version = "9.0.2"; src = fetchurl { - url = "https://registry.npmjs.org/postcss-cli/-/postcss-cli-9.0.1.tgz"; - sha512 = "zO160OBaAZBFUWO+QZIzEKMjnPIc5c61dMg1d7xafblh9cxbNb6s16ahJuP91PcVsu//gqr7BKllJxRiRDsSYw=="; + url = "https://registry.npmjs.org/postcss-cli/-/postcss-cli-9.0.2.tgz"; + sha512 = "08Wujoy7YGhKCFrGsT9OXqWjtHlGQ+JmyaD/4McjCiwor2IUTRVzXiJd+xmLTGdSWjceS6/TePaJQwBlkVWHiw=="; }; dependencies = [ sources."@nodelib/fs.scandir-2.1.5" @@ -109335,7 +113158,7 @@ in sources."glob-parent-5.1.2" sources."globby-12.0.2" sources."graceful-fs-4.2.8" - sources."ignore-5.1.8" + sources."ignore-5.1.9" sources."import-cwd-3.0.0" sources."import-from-3.0.0" sources."is-binary-path-2.1.0" @@ -109344,7 +113167,7 @@ in sources."is-glob-4.0.3" sources."is-number-7.0.0" sources."jsonfile-6.1.0" - sources."lilconfig-2.0.3" + sources."lilconfig-2.0.4" sources."lodash.difference-4.5.0" sources."lodash.forown-4.4.0" sources."lodash.get-4.4.2" @@ -109352,7 +113175,6 @@ in sources."lodash.sortby-4.7.0" sources."merge2-1.4.1" sources."micromatch-4.0.4" - sources."nanocolors-0.2.13" sources."normalize-path-3.0.0" sources."path-type-4.0.0" sources."picocolors-1.0.0" @@ -109434,13 +113256,13 @@ in prisma = nodeEnv.buildNodePackage { name = "prisma"; packageName = "prisma"; - version = "3.4.0"; + version = "3.4.2"; src = fetchurl { - url = "https://registry.npmjs.org/prisma/-/prisma-3.4.0.tgz"; - sha512 = "W0AFjVxPOLW5SEnf0ZwbOu4k8ElX98ioFC1E8Gb9Q/nuO2brEwxFJebXglfG+N6zphGbu2bG1I3VAu7aYzR3VA=="; + url = "https://registry.npmjs.org/prisma/-/prisma-3.4.2.tgz"; + sha512 = "wOD1lni7MfH/Qkp5SAkUthLKG+pQcpD31Nm8nAKj9ESgqId/dy+JDSTYOuk/pySvFyby/A+bsAPWIaVmo7qqhQ=="; }; dependencies = [ - sources."@prisma/engines-3.4.0-27.1c9fdaa9e2319b814822d6dbfd0a69e1fcc13a85" + sources."@prisma/engines-3.4.1-2.57771c0558568c7d08bd34c7248af5244ae16bd9" ]; buildInputs = globalBuildInputs; meta = { @@ -109777,7 +113599,7 @@ in sources."ansi-styles-3.2.1" sources."aproba-1.2.0" sources."arch-2.2.0" - sources."asn1-0.2.4" + sources."asn1-0.2.6" sources."assert-plus-1.0.0" sources."asynckit-0.4.0" sources."aws-sign2-0.7.0" @@ -109852,8 +113674,8 @@ in sources."log-update-3.4.0" sources."lru-cache-5.1.1" sources."merge-stream-2.0.0" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."mimic-fn-2.1.0" sources."minimatch-3.0.4" sources."minimist-1.2.5" @@ -110098,10 +113920,10 @@ in pyright = nodeEnv.buildNodePackage { name = "pyright"; packageName = "pyright"; - version = "1.1.184"; + version = "1.1.186"; src = fetchurl { - url = "https://registry.npmjs.org/pyright/-/pyright-1.1.184.tgz"; - sha512 = "SK/2cvIdj9hrkDasxVahK3Keo2fWgwN5phjwOyWGobW5KN1HLYWXQX335ls1FvC0ccWpGZfOBSmTWSu/JjpgFg=="; + url = "https://registry.npmjs.org/pyright/-/pyright-1.1.186.tgz"; + sha512 = "W5Ke8Lqop4HpabSMOTWRd6bRQx1i+PTAHENoa5RQHMsGV50y8WwmNOGcxeFixdz64UfXPO2Ye2XoR5wEz3JU8w=="; }; buildInputs = globalBuildInputs; meta = { @@ -110468,7 +114290,7 @@ in sources."@babel/generator-7.16.0" sources."@babel/helper-annotate-as-pure-7.16.0" sources."@babel/helper-builder-binary-assignment-operator-visitor-7.16.0" - (sources."@babel/helper-compilation-targets-7.16.0" // { + (sources."@babel/helper-compilation-targets-7.16.3" // { dependencies = [ sources."semver-6.3.0" ]; @@ -110497,9 +114319,9 @@ in sources."@babel/helper-validator-identifier-7.15.7" sources."@babel/helper-validator-option-7.14.5" sources."@babel/helper-wrap-function-7.16.0" - sources."@babel/helpers-7.16.0" + sources."@babel/helpers-7.16.3" sources."@babel/highlight-7.16.0" - sources."@babel/parser-7.16.2" + sources."@babel/parser-7.16.3" sources."@babel/plugin-bugfix-safari-id-destructuring-collision-in-function-expression-7.16.2" sources."@babel/plugin-bugfix-v8-spread-parameters-in-optional-chaining-7.16.0" sources."@babel/plugin-proposal-async-generator-functions-7.16.0" @@ -110555,7 +114377,7 @@ in sources."@babel/plugin-transform-named-capturing-groups-regex-7.16.0" sources."@babel/plugin-transform-new-target-7.16.0" sources."@babel/plugin-transform-object-super-7.16.0" - sources."@babel/plugin-transform-parameters-7.16.0" + sources."@babel/plugin-transform-parameters-7.16.3" sources."@babel/plugin-transform-property-literals-7.16.0" sources."@babel/plugin-transform-react-display-name-7.16.0" sources."@babel/plugin-transform-react-jsx-7.16.0" @@ -110584,16 +114406,16 @@ in sources."@babel/preset-react-7.16.0" sources."@babel/preset-stage-0-7.8.3" sources."@babel/register-7.16.0" - sources."@babel/runtime-7.16.0" + sources."@babel/runtime-7.16.3" sources."@babel/template-7.16.0" - sources."@babel/traverse-7.16.0" + sources."@babel/traverse-7.16.3" sources."@babel/types-7.16.0" sources."@reach/router-1.3.4" sources."@sindresorhus/is-0.7.0" sources."@types/glob-7.2.0" sources."@types/json-schema-7.0.9" sources."@types/minimatch-3.0.5" - sources."@types/node-16.11.6" + sources."@types/node-16.11.7" sources."@types/parse-json-4.0.0" sources."@types/q-1.5.5" sources."@webassemblyjs/ast-1.9.0" @@ -110628,7 +114450,7 @@ in sources."ansi-align-2.0.0" sources."ansi-colors-3.2.4" sources."ansi-escapes-3.2.0" - sources."ansi-html-0.0.7" + sources."ansi-html-community-0.0.8" sources."ansi-regex-3.0.0" sources."ansi-styles-3.2.1" sources."anymatch-3.1.2" @@ -110785,7 +114607,7 @@ in sources."camel-case-3.0.0" sources."camelcase-5.3.1" sources."caniuse-api-3.0.0" - sources."caniuse-lite-1.0.30001274" + sources."caniuse-lite-1.0.30001280" sources."case-sensitive-paths-webpack-plugin-2.4.0" sources."caw-2.0.1" sources."chalk-2.4.2" @@ -111009,7 +114831,7 @@ in sources."duplexify-3.7.1" sources."ee-first-1.1.1" sources."ejs-2.7.4" - sources."electron-to-chromium-1.3.887" + sources."electron-to-chromium-1.3.895" (sources."elliptic-6.5.4" // { dependencies = [ sources."bn.js-4.12.0" @@ -111105,7 +114927,7 @@ in }) (sources."extract-css-chunks-webpack-plugin-4.9.0" // { dependencies = [ - sources."loader-utils-2.0.1" + sources."loader-utils-2.0.2" sources."normalize-url-1.9.1" sources."prepend-http-1.0.4" sources."query-string-4.3.4" @@ -111412,8 +115234,8 @@ in ]; }) sources."mime-2.6.0" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."mimic-fn-1.2.0" sources."mimic-response-1.0.1" sources."minimalistic-assert-1.0.1" @@ -112130,7 +115952,7 @@ in sources."range-parser-1.2.1" ]; }) - (sources."webpack-dev-server-3.11.2" // { + (sources."webpack-dev-server-3.11.3" // { dependencies = [ sources."ansi-regex-2.1.1" sources."anymatch-2.0.0" @@ -112320,8 +116142,8 @@ in sources."is-potential-custom-element-name-1.0.1" sources."jsdom-18.0.1" sources."levn-0.3.0" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."ms-2.1.2" sources."nwsapi-2.2.0" sources."optionator-0.8.3" @@ -112388,10 +116210,10 @@ in sources."@babel/helper-split-export-declaration-7.16.0" sources."@babel/helper-validator-identifier-7.15.7" sources."@babel/highlight-7.16.0" - sources."@babel/parser-7.16.2" - sources."@babel/runtime-7.16.0" + sources."@babel/parser-7.16.3" + sources."@babel/runtime-7.16.3" sources."@babel/template-7.16.0" - sources."@babel/traverse-7.16.0" + sources."@babel/traverse-7.16.3" sources."@babel/types-7.16.0" sources."@emotion/is-prop-valid-0.8.8" sources."@emotion/memoize-0.7.4" @@ -112402,7 +116224,7 @@ in sources."@redocly/openapi-core-1.0.0-beta.67" sources."@redocly/react-dropdown-aria-2.0.12" sources."@types/json-schema-7.0.9" - sources."@types/node-14.17.32" + sources."@types/node-14.17.33" sources."ansi-regex-5.0.1" sources."ansi-styles-3.2.1" sources."anymatch-3.1.2" @@ -112549,7 +116371,7 @@ in sources."minimatch-3.0.4" sources."minimist-1.2.5" sources."mkdirp-1.0.4" - sources."mobx-6.3.6" + sources."mobx-6.3.7" sources."mobx-react-7.2.1" sources."mobx-react-lite-3.2.2" sources."ms-2.1.2" @@ -112831,10 +116653,10 @@ in "reveal.js" = nodeEnv.buildNodePackage { name = "reveal.js"; packageName = "reveal.js"; - version = "4.1.3"; + version = "4.2.0"; src = fetchurl { - url = "https://registry.npmjs.org/reveal.js/-/reveal.js-4.1.3.tgz"; - sha512 = "5VbL4nVDUedVKnOIIM3UQAIUlp+CvR/SrUkrN5GDoVfcWJAxH2oIh7PWyShy7+pE7tgkH2q+3e5EikGRpgE+oA=="; + url = "https://registry.npmjs.org/reveal.js/-/reveal.js-4.2.0.tgz"; + sha512 = "ukvq+a/kBu88jCJaQBCkYQ+vjaNUhlI50Y2GlNl4MS6OVnFHL+2Jb6XBZS4MDRWs3lLZAA3wXEu3xKFn8ebX0A=="; }; buildInputs = globalBuildInputs; meta = { @@ -112880,10 +116702,10 @@ in rollup = nodeEnv.buildNodePackage { name = "rollup"; packageName = "rollup"; - version = "2.59.0"; + version = "2.60.0"; src = fetchurl { - url = "https://registry.npmjs.org/rollup/-/rollup-2.59.0.tgz"; - sha512 = "l7s90JQhCQ6JyZjKgo7Lq1dKh2RxatOM+Jr6a9F7WbS9WgKbocyUSeLmZl8evAse7y96Ae98L2k1cBOwWD8nHw=="; + url = "https://registry.npmjs.org/rollup/-/rollup-2.60.0.tgz"; + sha512 = "cHdv9GWd58v58rdseC8e8XIaPUo8a9cgZpnCMMDGZFDZKEODOiPPEQFXLriWr/TjXzhPPmG5bkAztPsOARIcGQ=="; }; dependencies = [ sources."fsevents-2.3.2" @@ -112928,9 +116750,9 @@ in sources."@types/json-schema-7.0.9" sources."@types/minimatch-3.0.5" sources."@types/mocha-8.2.3" - sources."@types/node-14.17.32" + sources."@types/node-14.17.33" sources."@types/node-fetch-2.5.12" - sources."@types/vscode-1.61.0" + sources."@types/vscode-1.62.0" sources."@typescript-eslint/eslint-plugin-4.33.0" sources."@typescript-eslint/experimental-utils-4.33.0" sources."@typescript-eslint/parser-4.33.0" @@ -112953,7 +116775,7 @@ in sources."asynckit-0.4.0" sources."azure-devops-node-api-11.0.1" sources."balanced-match-1.0.2" - sources."big-integer-1.6.50" + sources."big-integer-1.6.51" sources."binary-0.3.0" sources."binary-extensions-2.2.0" sources."bluebird-3.4.7" @@ -113106,7 +116928,7 @@ in sources."find-up-5.0.0" sources."flat-5.0.2" sources."flat-cache-3.0.4" - sources."flatted-3.2.2" + sources."flatted-3.2.4" sources."form-data-3.0.1" sources."fs.realpath-1.0.0" sources."fsevents-2.3.2" @@ -113133,7 +116955,7 @@ in sources."http-proxy-agent-4.0.1" sources."https-proxy-agent-5.0.0" sources."iconv-lite-0.6.3" - sources."ignore-5.1.8" + sources."ignore-5.1.9" sources."import-fresh-3.3.0" sources."imurmurhash-0.1.4" sources."inflight-1.0.6" @@ -113158,7 +116980,6 @@ in sources."listenercount-1.0.1" sources."locate-path-6.0.0" sources."lodash-4.17.21" - sources."lodash.clonedeep-4.5.0" sources."lodash.merge-4.6.2" sources."lodash.truncate-4.4.2" sources."log-symbols-4.1.0" @@ -113172,8 +116993,8 @@ in sources."merge2-1.4.1" sources."micromatch-4.0.4" sources."mime-1.6.0" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."minimatch-3.0.4" sources."minimist-1.2.5" sources."mkdirp-0.5.5" @@ -113267,9 +117088,9 @@ in sources."strip-ansi-6.0.1" sources."strip-json-comments-3.1.1" sources."supports-color-5.5.0" - (sources."table-6.7.2" // { + (sources."table-6.7.3" // { dependencies = [ - sources."ajv-8.6.3" + sources."ajv-8.7.1" sources."json-schema-traverse-1.0.0" ]; }) @@ -113339,6 +117160,37 @@ in bypassCache = true; reconstructLock = true; }; + rtlcss = nodeEnv.buildNodePackage { + name = "rtlcss"; + packageName = "rtlcss"; + version = "3.5.0"; + src = fetchurl { + url = "https://registry.npmjs.org/rtlcss/-/rtlcss-3.5.0.tgz"; + sha512 = "wzgMaMFHQTnyi9YOwsx9LjOxYXJPzS8sYnFaKm6R5ysvTkwzHiB0vxnbHwchHQT65PTdBjDG21/kQBWI7q9O7A=="; + }; + dependencies = [ + sources."find-up-5.0.0" + sources."locate-path-6.0.0" + sources."nanoid-3.1.30" + sources."p-limit-3.1.0" + sources."p-locate-5.0.0" + sources."path-exists-4.0.0" + sources."picocolors-1.0.0" + sources."postcss-8.3.11" + sources."source-map-js-0.6.2" + sources."strip-json-comments-3.1.1" + sources."yocto-queue-0.1.0" + ]; + buildInputs = globalBuildInputs; + meta = { + description = "Framework for transforming cascading style sheets (CSS) from left-to-right (LTR) to right-to-left (RTL)"; + homepage = "https://rtlcss.com/"; + license = "MIT"; + }; + production = true; + bypassCache = true; + reconstructLock = true; + }; s3http = nodeEnv.buildNodePackage { name = "s3http"; packageName = "s3http"; @@ -113495,46 +117347,53 @@ in serve = nodeEnv.buildNodePackage { name = "serve"; packageName = "serve"; - version = "12.0.1"; + version = "13.0.2"; src = fetchurl { - url = "https://registry.npmjs.org/serve/-/serve-12.0.1.tgz"; - sha512 = "CQ4ikLpxg/wmNM7yivulpS6fhjRiFG6OjmP8ty3/c1SBnSk23fpKmLAV4HboTA2KrZhkUPlDfjDhnRmAjQ5Phw=="; + url = "https://registry.npmjs.org/serve/-/serve-13.0.2.tgz"; + sha512 = "71R6fKvNgKrqARAag6lYJNnxDzpH7DCNrMuvPY5PLVaC2PDhJsGTj/34o4o4tPWhTuLgEXqvgnAWbATQ9zGZTQ=="; }; dependencies = [ sources."@zeit/schemas-2.6.0" sources."accepts-1.3.7" sources."ajv-6.12.6" - sources."ansi-align-2.0.0" - sources."ansi-regex-3.0.0" - sources."ansi-styles-3.2.1" + sources."ansi-align-3.0.1" + sources."ansi-regex-5.0.1" + sources."ansi-styles-4.3.0" sources."arch-2.2.0" sources."arg-2.0.0" sources."balanced-match-1.0.2" - sources."boxen-1.3.0" - sources."brace-expansion-1.1.11" - sources."bytes-3.0.0" - sources."camelcase-4.1.0" - sources."chalk-2.4.1" - sources."cli-boxes-1.0.0" - (sources."clipboardy-2.3.0" // { + (sources."boxen-5.1.2" // { dependencies = [ - sources."cross-spawn-6.0.5" - sources."execa-1.0.0" - sources."get-stream-4.1.0" + sources."chalk-4.1.2" ]; }) - sources."color-convert-1.9.3" - sources."color-name-1.1.3" + sources."brace-expansion-1.1.11" + sources."bytes-3.0.0" + sources."camelcase-6.2.0" + (sources."chalk-2.4.1" // { + dependencies = [ + sources."ansi-styles-3.2.1" + sources."color-convert-1.9.3" + sources."color-name-1.1.3" + sources."has-flag-3.0.0" + sources."supports-color-5.5.0" + ]; + }) + sources."cli-boxes-2.2.1" + sources."clipboardy-2.3.0" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" sources."compressible-2.0.18" sources."compression-1.7.3" sources."concat-map-0.0.1" sources."content-disposition-0.5.2" - sources."cross-spawn-5.1.0" + sources."cross-spawn-6.0.5" sources."debug-2.6.9" sources."deep-extend-0.6.0" + sources."emoji-regex-8.0.0" sources."end-of-stream-1.4.4" sources."escape-string-regexp-1.0.5" - sources."execa-0.7.0" + sources."execa-1.0.0" sources."fast-deep-equal-3.1.3" sources."fast-json-stable-stringify-2.1.0" (sources."fast-url-parser-1.1.3" // { @@ -113542,18 +117401,17 @@ in sources."punycode-1.4.1" ]; }) - sources."get-stream-3.0.0" - sources."has-flag-3.0.0" + sources."get-stream-4.1.0" + sources."has-flag-4.0.0" sources."ini-1.3.8" sources."is-docker-2.2.1" - sources."is-fullwidth-code-point-2.0.0" + sources."is-fullwidth-code-point-3.0.0" sources."is-stream-1.1.0" sources."is-wsl-2.2.0" sources."isexe-2.0.0" sources."json-schema-traverse-0.4.1" - sources."lru-cache-4.1.5" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."minimatch-3.0.4" sources."minimist-1.2.5" sources."ms-2.0.0" @@ -113566,7 +117424,6 @@ in sources."path-is-inside-1.0.2" sources."path-key-2.0.1" sources."path-to-regexp-2.2.1" - sources."pseudomap-1.0.2" sources."pump-3.0.0" sources."punycode-2.1.1" sources."range-parser-1.2.0" @@ -113584,19 +117441,19 @@ in sources."shebang-command-1.2.0" sources."shebang-regex-1.0.0" sources."signal-exit-3.0.5" - sources."string-width-2.1.1" - sources."strip-ansi-4.0.0" + sources."string-width-4.2.3" + sources."strip-ansi-6.0.1" sources."strip-eof-1.0.0" sources."strip-json-comments-2.0.1" - sources."supports-color-5.5.0" - sources."term-size-1.2.0" + sources."supports-color-7.2.0" + sources."type-fest-0.20.2" sources."update-check-1.5.2" sources."uri-js-4.4.1" sources."vary-1.1.2" sources."which-1.3.1" - sources."widest-line-2.0.1" + sources."widest-line-3.1.0" + sources."wrap-ansi-7.0.0" sources."wrappy-1.0.2" - sources."yallist-2.1.2" ]; buildInputs = globalBuildInputs; meta = { @@ -113611,10 +117468,10 @@ in serverless = nodeEnv.buildNodePackage { name = "serverless"; packageName = "serverless"; - version = "2.64.1"; + version = "2.66.1"; src = fetchurl { - url = "https://registry.npmjs.org/serverless/-/serverless-2.64.1.tgz"; - sha512 = "9DErsV4ACg/2UkRoX2EYRkcDyRi3NBld/gexCeVnkmUunadSwnmtSBeVU8spvg+zc61b1vbusTHE4woqcd2gvw=="; + url = "https://registry.npmjs.org/serverless/-/serverless-2.66.1.tgz"; + sha512 = "Swf5aHivSfU0fKuvV4FY0WmMNBZVx7cVK3FcxWLX1lFuzUQ+5D/bpunHW4lmg4tKmGtjBnQ0oQ+4N2MHE3wPrg=="; }; dependencies = [ sources."2-thenable-1.0.0" @@ -113647,7 +117504,7 @@ in ]; }) sources."@serverless/component-metrics-1.0.8" - (sources."@serverless/components-3.17.1" // { + (sources."@serverless/components-3.18.0" // { dependencies = [ (sources."@serverless/utils-4.1.0" // { dependencies = [ @@ -113672,7 +117529,7 @@ in sources."semver-6.3.0" ]; }) - sources."@serverless/dashboard-plugin-5.5.0" + sources."@serverless/dashboard-plugin-5.5.1" sources."@serverless/event-mocks-1.1.1" (sources."@serverless/platform-client-4.3.0" // { dependencies = [ @@ -113680,14 +117537,14 @@ in sources."jwt-decode-2.2.0" ]; }) - (sources."@serverless/platform-client-china-2.3.1" // { + (sources."@serverless/platform-client-china-2.3.2" // { dependencies = [ sources."dotenv-8.6.0" sources."js-yaml-3.14.1" ]; }) sources."@serverless/template-1.1.4" - (sources."@serverless/utils-5.19.0" // { + (sources."@serverless/utils-5.20.1" // { dependencies = [ sources."get-stream-6.0.1" sources."has-flag-4.0.0" @@ -113706,7 +117563,7 @@ in sources."@types/keyv-3.1.3" sources."@types/lodash-4.14.176" sources."@types/long-4.0.1" - sources."@types/node-16.11.6" + sources."@types/node-16.11.7" sources."@types/request-2.48.7" sources."@types/request-promise-native-1.0.18" sources."@types/responselike-1.0.0" @@ -113761,12 +117618,12 @@ in sources."argparse-1.0.10" sources."array-union-2.1.0" sources."arraybuffer.slice-0.0.7" - sources."asn1-0.2.4" + sources."asn1-0.2.6" sources."assert-plus-1.0.0" sources."async-2.6.3" sources."asynckit-0.4.0" sources."at-least-node-1.0.0" - (sources."aws-sdk-2.1020.0" // { + (sources."aws-sdk-2.1027.0" // { dependencies = [ sources."buffer-4.9.2" sources."ieee754-1.1.13" @@ -114062,7 +117919,7 @@ in }) sources."iconv-lite-0.4.24" sources."ieee754-1.2.1" - sources."ignore-5.1.8" + sources."ignore-5.1.9" sources."immediate-3.0.6" sources."imurmurhash-0.1.4" sources."indexof-0.0.1" @@ -114174,8 +118031,8 @@ in sources."methods-1.1.2" sources."micromatch-4.0.4" sources."mime-1.6.0" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."mimic-fn-2.1.0" sources."mimic-response-1.0.1" sources."minimatch-3.0.4" @@ -114514,7 +118371,7 @@ in sources."ajv-6.12.6" sources."array-flatten-1.1.1" sources."arraybuffer.slice-0.0.6" - sources."asn1-0.2.4" + sources."asn1-0.2.6" sources."assert-plus-1.0.0" sources."asynckit-0.4.0" sources."aws-sign2-0.7.0" @@ -114623,8 +118480,8 @@ in sources."merge-descriptors-1.0.1" sources."methods-1.1.2" sources."mime-1.6.0" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."minimist-1.2.5" sources."mkdirp-0.5.5" sources."moment-2.7.0" @@ -114977,10 +118834,10 @@ in smartdc = nodeEnv.buildNodePackage { name = "smartdc"; packageName = "smartdc"; - version = "9.0.0"; + version = "9.0.1"; src = fetchurl { - url = "https://registry.npmjs.org/smartdc/-/smartdc-9.0.0.tgz"; - sha512 = "EGXTn+4v1f9SBVPP3NiWTNMiTtnYZS+eWV88aU8tqwlg+jQTQHrCvgrXwDz5YXZkqpeoeT9/tYDs4nwxaUgxFQ=="; + url = "https://registry.npmjs.org/smartdc/-/smartdc-9.0.1.tgz"; + sha512 = "hhpxefhihVCO/OwgQ0e6wpvDfjcWnIvhiHtCtWBOzN1N6bSLERje/CWOR+dKZy+n9jX7t5FnE2qWVwt8/RLkrQ=="; }; dependencies = [ sources."abbrev-1.1.1" @@ -115061,7 +118918,7 @@ in sources."semver-4.3.6" (sources."smartdc-auth-2.3.1" // { dependencies = [ - sources."asn1-0.2.4" + sources."asn1-0.2.6" sources."assert-plus-0.1.2" sources."clone-0.1.5" sources."dashdash-1.10.1" @@ -115090,7 +118947,7 @@ in sources."spdy-1.32.5" (sources."sshpk-1.7.1" // { dependencies = [ - sources."asn1-0.2.4" + sources."asn1-0.2.6" sources."assert-plus-0.2.0" (sources."dashdash-1.14.1" // { dependencies = [ @@ -115130,10 +118987,10 @@ in snyk = nodeEnv.buildNodePackage { name = "snyk"; packageName = "snyk"; - version = "1.750.0"; + version = "1.760.0"; src = fetchurl { - url = "https://registry.npmjs.org/snyk/-/snyk-1.750.0.tgz"; - sha512 = "1tYnqj0VgHbss+GvMA5747iwQCdGq61fMDfxxfD+Y3Ii7wO1G1tYWnVhmmR48NYPup4L9qq6FuWgCYSEwUxFug=="; + url = "https://registry.npmjs.org/snyk/-/snyk-1.760.0.tgz"; + sha512 = "pVH3AbY30zNerW+F+okULIRYVj0r8Ksvd8WW+beMddghOH31ZePpAWjK5F+D6d3Dy3WJ3n/JyAywxiTS+2d6kQ=="; }; buildInputs = globalBuildInputs; meta = { @@ -115148,16 +119005,16 @@ in "socket.io" = nodeEnv.buildNodePackage { name = "socket.io"; packageName = "socket.io"; - version = "4.3.1"; + version = "4.3.2"; src = fetchurl { - url = "https://registry.npmjs.org/socket.io/-/socket.io-4.3.1.tgz"; - sha512 = "HC5w5Olv2XZ0XJ4gOLGzzHEuOCfj3G0SmoW3jLHYYh34EVsIr3EkW9h6kgfW+K3TFEcmYy8JcPWe//KUkBp5jA=="; + url = "https://registry.npmjs.org/socket.io/-/socket.io-4.3.2.tgz"; + sha512 = "6S5tV4jcY6dbZ/lLzD6EkvNWI3s81JO6ABP/EpvOlK1NPOcIj3AS4khi6xXw6JlZCASq82HQV4SapfmVMMl2dg=="; }; dependencies = [ sources."@types/component-emitter-1.2.11" sources."@types/cookie-0.4.1" sources."@types/cors-2.8.12" - sources."@types/node-16.11.6" + sources."@types/node-16.11.7" sources."accepts-1.3.7" sources."base64-arraybuffer-1.0.1" sources."base64id-2.0.0" @@ -115165,10 +119022,10 @@ in sources."cookie-0.4.1" sources."cors-2.8.5" sources."debug-4.3.2" - sources."engine.io-6.0.0" + sources."engine.io-6.0.1" sources."engine.io-parser-5.0.1" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."ms-2.1.2" sources."negotiator-0.6.2" sources."object-assign-4.1.1" @@ -115426,6 +119283,7 @@ in sources."atomic-file-rw-0.2.2" sources."attach-ware-1.1.1" sources."available-typed-arrays-1.0.5" + sources."b4a-1.1.2" sources."bail-1.0.5" sources."balanced-match-1.0.2" (sources."base-0.11.2" // { @@ -115915,7 +119773,7 @@ in sources."pull-looper-1.0.0" sources."pull-many-1.0.9" sources."pull-next-1.0.1" - sources."pull-notify-0.1.1" + sources."pull-notify-0.1.2" sources."pull-pair-1.1.0" sources."pull-paramap-1.2.2" sources."pull-pause-0.0.2" @@ -115950,6 +119808,7 @@ in ]; }) sources."querystringify-2.2.0" + sources."queue-tick-1.0.0" sources."quicktask-1.0.1" sources."railroad-diagrams-1.0.0" sources."randexp-0.4.6" @@ -115966,8 +119825,8 @@ in sources."random-access-storage-1.3.0" ]; }) - sources."random-access-memory-3.1.2" - sources."random-access-storage-1.4.1" + sources."random-access-memory-3.1.3" + sources."random-access-storage-1.4.2" sources."random-access-web-2.0.3" (sources."randomatic-3.1.1" // { dependencies = [ @@ -116135,7 +119994,7 @@ in ]; }) sources."ssb-db-19.2.0" - (sources."ssb-db2-2.7.0" // { + (sources."ssb-db2-2.7.2" // { dependencies = [ sources."abstract-leveldown-6.2.3" (sources."flumecodec-0.0.1" // { @@ -116398,12 +120257,12 @@ in sources."arraybuffer.slice-0.0.7" sources."asap-2.0.6" sources."ascli-0.3.0" - sources."asn1-0.2.4" + sources."asn1-0.2.6" sources."assert-plus-0.2.0" sources."async-1.5.2" sources."async-limiter-1.0.1" sources."asynckit-0.4.0" - (sources."aws-sdk-2.1020.0" // { + (sources."aws-sdk-2.1027.0" // { dependencies = [ sources."uuid-3.3.2" ]; @@ -116665,7 +120524,7 @@ in }) sources."is-fullwidth-code-point-1.0.0" sources."is-my-ip-valid-1.0.0" - sources."is-my-json-valid-2.20.5" + sources."is-my-json-valid-2.20.6" sources."is-promise-2.2.2" sources."is-property-1.0.2" sources."is-regex-1.1.4" @@ -116694,7 +120553,7 @@ in sources."json-schema-traverse-0.4.1" sources."json-stringify-safe-5.0.1" sources."json5-1.0.1" - sources."jsonpointer-4.1.0" + sources."jsonpointer-5.0.0" sources."jspath-0.3.4" (sources."jsprim-1.4.1" // { dependencies = [ @@ -116761,8 +120620,8 @@ in sources."merge-descriptors-1.0.1" sources."methods-1.1.2" sources."mime-1.6.0" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."mimic-fn-2.1.0" sources."minicap-prebuilt-2.3.0" sources."minimatch-3.0.4" @@ -117195,7 +121054,7 @@ in sources."@types/minimist-1.2.2" sources."@types/normalize-package-data-2.4.1" sources."@types/parse-json-4.0.0" - sources."ajv-8.6.3" + sources."ajv-8.7.1" sources."ansi-regex-5.0.1" sources."ansi-styles-3.2.1" sources."array-union-2.1.0" @@ -117238,7 +121097,7 @@ in sources."fill-range-7.0.1" sources."find-up-4.1.0" sources."flat-cache-3.0.4" - sources."flatted-3.2.2" + sources."flatted-3.2.4" sources."fs.realpath-1.0.0" sources."function-bind-1.1.1" sources."get-stdin-8.0.0" @@ -117253,7 +121112,7 @@ in sources."has-flag-3.0.0" sources."hosted-git-info-4.0.2" sources."html-tags-3.1.0" - sources."ignore-5.1.8" + sources."ignore-5.1.9" (sources."import-fresh-3.3.0" // { dependencies = [ sources."resolve-from-4.0.0" @@ -117283,7 +121142,6 @@ in sources."known-css-properties-0.23.0" sources."lines-and-columns-1.1.6" sources."locate-path-5.0.0" - sources."lodash.clonedeep-4.5.0" sources."lodash.truncate-4.4.2" sources."lru-cache-6.0.0" sources."map-obj-4.3.0" @@ -117362,7 +121220,7 @@ in sources."style-search-0.1.0" sources."supports-color-5.5.0" sources."svg-tags-1.0.0" - sources."table-6.7.2" + sources."table-6.7.3" sources."to-regex-range-5.0.1" sources."trim-newlines-3.0.1" sources."type-fest-0.18.1" @@ -117400,7 +121258,7 @@ in sources."@nodelib/fs.scandir-2.1.5" sources."@nodelib/fs.stat-2.0.5" sources."@nodelib/fs.walk-1.2.8" - sources."@types/node-16.11.6" + sources."@types/node-16.11.7" sources."@types/pug-2.0.5" sources."@types/sass-1.43.0" sources."ansi-styles-4.3.0" @@ -117490,7 +121348,7 @@ in sources."@nodelib/fs.scandir-2.1.5" sources."@nodelib/fs.stat-2.0.5" sources."@nodelib/fs.walk-1.2.8" - sources."@types/node-16.11.6" + sources."@types/node-16.11.7" sources."@types/pug-2.0.5" sources."@types/sass-1.43.0" sources."anymatch-3.1.2" @@ -117929,8 +121787,8 @@ in sources."methods-1.1.2" sources."micromatch-3.1.10" sources."mime-1.6.0" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."minimatch-3.0.4" sources."minimist-0.0.8" sources."mixin-deep-1.3.2" @@ -118251,7 +122109,7 @@ in sources."ansi-regex-4.1.0" sources."ansi-styles-3.2.1" sources."argparse-1.0.10" - sources."asn1-0.2.4" + sources."asn1-0.2.6" sources."assert-plus-1.0.0" sources."async-limiter-1.0.1" sources."asynckit-0.4.0" @@ -118301,8 +122159,8 @@ in sources."locate-path-3.0.0" sources."long-4.0.0" sources."mime-2.6.0" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."minimist-1.2.5" sources."module-alias-2.2.2" sources."moment-2.29.1" @@ -118341,7 +122199,7 @@ in sources."tr46-0.0.3" sources."tunnel-agent-0.6.0" sources."tweetnacl-1.0.3" - sources."typegram-3.4.3" + sources."typegram-3.5.1" sources."uri-js-4.4.1" sources."uuid-3.4.0" sources."verror-1.10.0" @@ -118375,7 +122233,7 @@ in sources."node-addon-api-4.2.0" sources."node-gyp-build-4.3.0" sources."q-1.5.1" - sources."usb-1.8.0" + sources."usb-1.9.0" ]; buildInputs = globalBuildInputs; meta = { @@ -118492,7 +122350,7 @@ in sources."@textlint/utils-12.0.2" sources."@types/mdast-3.0.10" sources."@types/unist-2.0.6" - sources."ajv-8.6.3" + sources."ajv-8.7.1" sources."ansi-regex-2.1.1" sources."ansi-styles-2.2.1" sources."argparse-1.0.10" @@ -118569,7 +122427,6 @@ in sources."levn-0.4.1" sources."load-json-file-1.1.0" sources."locate-path-2.0.0" - sources."lodash.clonedeep-4.5.0" sources."lodash.truncate-4.4.2" sources."log-symbols-1.0.2" sources."longest-streak-2.0.4" @@ -118675,7 +122532,7 @@ in sources."strip-bom-2.0.0" sources."structured-source-3.0.2" sources."supports-color-2.0.0" - (sources."table-6.7.2" // { + (sources."table-6.7.3" // { dependencies = [ sources."is-fullwidth-code-point-3.0.0" sources."string-width-4.2.3" @@ -118901,7 +122758,7 @@ in sources."hastscript-6.0.0" sources."hosted-git-info-2.8.9" sources."http-cache-semantics-4.1.0" - sources."ignore-5.1.8" + sources."ignore-5.1.9" sources."import-lazy-2.1.0" sources."imurmurhash-0.1.4" sources."indent-string-4.0.0" @@ -119566,7 +123423,7 @@ in sources."@types/cacheable-request-6.0.2" sources."@types/http-cache-semantics-4.0.1" sources."@types/keyv-3.1.3" - sources."@types/node-16.11.6" + sources."@types/node-16.11.7" sources."@types/responselike-1.0.0" sources."abbrev-1.1.1" sources."abstract-logging-2.0.1" @@ -119592,7 +123449,7 @@ in }) sources."array-flatten-1.1.1" sources."arraybuffer.slice-0.0.7" - sources."asn1-0.2.4" + sources."asn1-0.2.6" sources."asn1.js-5.4.1" sources."assert-plus-1.0.0" sources."async-limiter-1.0.1" @@ -119980,7 +123837,7 @@ in sources."utils-merge-1.0.1" sources."uuid-8.3.0" sources."vary-1.1.2" - (sources."vasync-2.2.0" // { + (sources."vasync-2.2.1" // { dependencies = [ sources."verror-1.10.0" ]; @@ -120065,7 +123922,7 @@ in sources."@octokit/rest-18.12.0" sources."@octokit/types-6.34.0" sources."ajv-6.12.6" - sources."asn1-0.2.4" + sources."asn1-0.2.6" sources."assert-plus-1.0.0" sources."async-3.2.2" sources."asynckit-0.4.0" @@ -120126,8 +123983,8 @@ in sources."jsprim-1.4.1" sources."keypress-0.2.1" sources."lru-cache-6.0.0" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."minimatch-3.0.4" sources."minimist-1.2.5" sources."mkdirp-0.5.5" @@ -120189,13 +124046,13 @@ in triton = nodeEnv.buildNodePackage { name = "triton"; packageName = "triton"; - version = "7.15.0"; + version = "7.15.1"; src = fetchurl { - url = "https://registry.npmjs.org/triton/-/triton-7.15.0.tgz"; - sha512 = "P0toU5OT3VdKKkJSrjLrFZFgo+0UlPliZ2TDLzF/brfOaPwfousrwJrVfmxtMPO3gk0Dpokz/gfJc7CO9ENeTg=="; + url = "https://registry.npmjs.org/triton/-/triton-7.15.1.tgz"; + sha512 = "K+tUAaVfg1pAD/M9tWB7JsFLv6P5I6J1oLDxLjx1SyrpSGZ5HscDR2d8p+OMuiDMFsUT1NbLSS55qhzhVuyt4A=="; }; dependencies = [ - sources."asn1-0.2.4" + sources."asn1-0.2.6" sources."assert-plus-0.2.0" sources."backoff-2.4.1" sources."balanced-match-1.0.2" @@ -120476,10 +124333,10 @@ in typescript-language-server = nodeEnv.buildNodePackage { name = "typescript-language-server"; packageName = "typescript-language-server"; - version = "0.6.4"; + version = "0.7.1"; src = fetchurl { - url = "https://registry.npmjs.org/typescript-language-server/-/typescript-language-server-0.6.4.tgz"; - sha512 = "tcN3Kyq/tHF79rNdueFNOyY3fTFTj9t0oneoLzkAhV35QBghxwX1eDi6oOnzIglZjSbJWosdnedHHfyjqQ62ig=="; + url = "https://registry.npmjs.org/typescript-language-server/-/typescript-language-server-0.7.1.tgz"; + sha512 = "pxPFvsDQolUTJTBdr8e9Qo+SBCYU8RIUO0l8eODMjBDvG9rTl6NTME+OEzMiR8LQ8siZ2jdQUq4K+6a/+20JCQ=="; }; dependencies = [ sources."@nodelib/fs.scandir-2.1.5" @@ -120506,7 +124363,7 @@ in sources."glob-parent-5.1.2" sources."globby-11.0.4" sources."graceful-fs-4.2.8" - sources."ignore-5.1.8" + sources."ignore-5.1.9" sources."indent-string-4.0.0" sources."inflight-1.0.6" sources."inherits-2.0.4" @@ -120517,6 +124374,7 @@ in sources."is-path-inside-3.0.3" sources."is-stream-2.0.1" sources."jsonfile-6.1.0" + sources."lru-cache-6.0.0" sources."merge2-1.4.1" sources."micromatch-4.0.4" sources."minimatch-3.0.4" @@ -120530,6 +124388,7 @@ in sources."reusify-1.0.4" sources."rimraf-3.0.2" sources."run-parallel-1.2.0" + sources."semver-7.3.5" sources."slash-3.0.0" sources."temp-dir-2.0.0" sources."tempy-1.0.1" @@ -120544,6 +124403,7 @@ in sources."vscode-languageserver-types-3.16.0" sources."vscode-uri-1.0.8" sources."wrappy-1.0.2" + sources."yallist-4.0.0" ]; buildInputs = globalBuildInputs; meta = { @@ -120606,7 +124466,7 @@ in sources."@types/component-emitter-1.2.11" sources."@types/cookie-0.4.1" sources."@types/cors-2.8.12" - sources."@types/node-14.17.32" + sources."@types/node-14.17.33" sources."abbrev-1.1.1" sources."accepts-1.3.7" sources."ansi-regex-5.0.1" @@ -120707,7 +124567,7 @@ in sources."http-cache-semantics-4.1.0" sources."http-errors-1.7.2" sources."iconv-lite-0.4.24" - sources."ignore-5.1.8" + sources."ignore-5.1.9" sources."inflight-1.0.6" sources."inherits-2.0.3" sources."ini-1.3.8" @@ -120745,8 +124605,8 @@ in sources."merge-descriptors-1.0.1" sources."methods-1.1.2" sources."mime-1.6.0" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."mimic-response-1.0.1" sources."minimatch-3.0.4" sources."minimist-1.2.5" @@ -120887,7 +124747,7 @@ in sha512 = "N+ENrder8z9zJQF9UM7K3/1LcfVW60omqeyaQsu6GN1BGdCgPm8gdHssn7WRD7vx+ABKc82IE1+pJyHOPkwe+w=="; }; dependencies = [ - sources."@types/node-16.11.6" + sources."@types/node-16.11.7" sources."@types/unist-2.0.6" sources."@types/vfile-3.0.2" sources."@types/vfile-message-2.0.0" @@ -121264,7 +125124,7 @@ in dependencies = [ sources."@sindresorhus/is-0.14.0" sources."@szmarczak/http-timer-1.1.2" - sources."@types/node-16.11.6" + sources."@types/node-16.11.7" sources."@vercel/build-utils-2.12.2" sources."@vercel/go-1.2.3" sources."@vercel/node-1.12.1" @@ -121480,7 +125340,7 @@ in sources."fast-levenshtein-2.0.6" sources."file-entry-cache-6.0.1" sources."flat-cache-3.0.4" - sources."flatted-3.2.2" + sources."flatted-3.2.4" sources."fs.realpath-1.0.0" sources."function-bind-1.1.1" sources."functional-red-black-tree-1.0.1" @@ -121510,7 +125370,6 @@ in sources."json-stable-stringify-without-jsonify-1.0.1" sources."levn-0.4.1" sources."lodash-4.17.21" - sources."lodash.clonedeep-4.5.0" sources."lodash.merge-4.6.2" sources."lodash.truncate-4.4.2" sources."lru-cache-6.0.0" @@ -121552,9 +125411,9 @@ in sources."strip-ansi-6.0.1" sources."strip-json-comments-3.1.1" sources."supports-color-5.5.0" - (sources."table-6.7.2" // { + (sources."table-6.7.3" // { dependencies = [ - sources."ajv-8.6.3" + sources."ajv-8.7.1" sources."json-schema-traverse-1.0.0" ]; }) @@ -121679,7 +125538,7 @@ in sources."jsonc-parser-3.0.0" sources."ms-2.0.0" sources."request-light-0.4.0" - (sources."vscode-json-languageservice-4.1.9" // { + (sources."vscode-json-languageservice-4.1.10" // { dependencies = [ sources."vscode-nls-5.0.0" ]; @@ -121766,7 +125625,7 @@ in sources."typescript-4.4.4" sources."vscode-css-languageservice-5.1.8" sources."vscode-html-languageservice-4.1.1" - sources."vscode-json-languageservice-4.1.9" + sources."vscode-json-languageservice-4.1.10" sources."vscode-jsonrpc-8.0.0-next.3" sources."vscode-languageserver-8.0.0-next.3" (sources."vscode-languageserver-protocol-3.17.0-next.9" // { @@ -121802,7 +125661,7 @@ in sources."@types/json-schema-7.0.9" sources."@types/mocha-7.0.2" sources."@types/node-8.10.66" - sources."@types/vscode-1.61.0" + sources."@types/vscode-1.62.0" sources."@types/yauzl-2.9.2" sources."@ungap/promise-all-settled-1.1.2" sources."@webassemblyjs/ast-1.11.1" @@ -121847,7 +125706,7 @@ in sources."buffer-from-1.1.2" sources."call-bind-1.0.2" sources."camelcase-6.2.0" - sources."caniuse-lite-1.0.30001274" + sources."caniuse-lite-1.0.30001280" (sources."chalk-4.1.2" // { dependencies = [ sources."supports-color-7.2.0" @@ -121887,7 +125746,7 @@ in sources."domelementtype-2.2.0" sources."domhandler-4.2.2" sources."domutils-2.8.0" - sources."electron-to-chromium-1.3.887" + sources."electron-to-chromium-1.3.895" sources."emoji-regex-8.0.0" sources."emojis-list-3.0.0" sources."enhanced-resolve-5.8.3" @@ -121955,7 +125814,7 @@ in sources."leven-3.1.0" sources."linkify-it-2.2.0" sources."loader-runner-4.2.0" - sources."loader-utils-2.0.1" + sources."loader-utils-2.0.2" sources."locate-path-6.0.0" sources."lodash-4.17.21" sources."log-symbols-4.0.0" @@ -121979,8 +125838,8 @@ in sources."merge-stream-2.0.0" sources."micromatch-4.0.4" sources."mime-1.6.0" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."mimic-fn-2.1.0" sources."minimatch-3.0.4" sources."minimist-1.2.5" @@ -122059,7 +125918,7 @@ in sources."source-map-0.7.3" ]; }) - (sources."terser-webpack-plugin-5.2.4" // { + (sources."terser-webpack-plugin-5.2.5" // { dependencies = [ sources."serialize-javascript-6.0.0" ]; @@ -122096,7 +125955,7 @@ in sources."vscode-debugadapter-testsupport-1.50.0" sources."vscode-debugprotocol-1.50.1" sources."watchpack-2.2.0" - sources."webpack-5.61.0" + sources."webpack-5.64.0" (sources."webpack-cli-4.9.1" // { dependencies = [ sources."commander-7.2.0" @@ -122162,7 +126021,7 @@ in sources."array-union-1.0.2" sources."array-uniq-1.0.3" sources."arrify-1.0.1" - sources."asn1-0.2.4" + sources."asn1-0.2.6" sources."assert-plus-1.0.0" sources."async-2.6.3" sources."asynckit-0.4.0" @@ -122308,8 +126167,8 @@ in sources."supports-color-2.0.0" ]; }) - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."mimic-fn-1.2.0" sources."minimatch-3.0.4" sources."minimist-1.2.5" @@ -122457,7 +126316,7 @@ in sources."@starptech/rehype-webparser-0.10.0" sources."@starptech/webparser-0.10.0" sources."@szmarczak/http-timer-1.1.2" - sources."@types/node-16.11.6" + sources."@types/node-16.11.7" sources."@types/unist-2.0.6" sources."@types/vfile-3.0.2" sources."@types/vfile-message-2.0.0" @@ -122600,7 +126459,7 @@ in }) sources."comma-separated-tokens-1.0.8" sources."commander-2.20.3" - sources."common-tags-1.8.0" + sources."common-tags-1.8.1" sources."component-emitter-1.3.0" sources."concat-map-0.0.1" sources."concat-stream-1.6.2" @@ -123382,7 +127241,7 @@ in sha512 = "slGcIXCA/j5d2uzQ7flA4/veF0P0eE+Om/Bw7uEO2LC9a3mVNdB+2bSR1CILMjvgyFy9Q9D6eseomQgp7UW5Dg=="; }; dependencies = [ - sources."@babel/runtime-corejs3-7.16.0" + sources."@babel/runtime-corejs3-7.16.3" sources."@mapbox/node-pre-gyp-1.0.6" sources."@tootallnate/once-1.1.2" sources."@types/raf-3.4.0" @@ -123492,8 +127351,8 @@ in sources."semver-6.3.0" ]; }) - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."mimic-response-2.1.0" sources."minimatch-3.0.4" sources."minimist-1.2.5" @@ -123638,7 +127497,7 @@ in sources."@sindresorhus/is-0.14.0" sources."@szmarczak/http-timer-1.1.2" sources."@types/minimatch-3.0.5" - sources."@types/node-16.11.6" + sources."@types/node-16.11.7" sources."@types/yauzl-2.9.2" sources."acorn-7.4.1" sources."acorn-jsx-5.3.2" @@ -123664,7 +127523,7 @@ in sources."array-reduce-0.0.0" sources."array-union-2.1.0" sources."arrify-2.0.1" - sources."asn1-0.2.4" + sources."asn1-0.2.6" sources."assert-plus-1.0.0" sources."astral-regex-2.0.0" sources."async-0.2.10" @@ -123826,7 +127685,7 @@ in sources."first-chunk-stream-3.0.0" sources."flat-cache-3.0.4" sources."flatstr-1.0.12" - sources."flatted-3.2.2" + sources."flatted-3.2.4" sources."fluent-syntax-0.13.0" sources."forever-agent-0.6.1" sources."form-data-2.3.3" @@ -123941,7 +127800,6 @@ in sources."lie-3.3.0" sources."lighthouse-logger-1.3.0" sources."lines-and-columns-1.1.6" - sources."lodash.clonedeep-4.5.0" sources."lodash.includes-4.3.0" sources."lodash.isboolean-3.0.3" sources."lodash.isinteger-4.0.4" @@ -123962,8 +127820,8 @@ in sources."marky-1.2.2" sources."mem-5.1.1" sources."merge-stream-2.0.0" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."mimic-fn-2.1.0" sources."mimic-response-1.0.1" sources."minimatch-3.0.4" @@ -124116,9 +127974,9 @@ in sources."strip-final-newline-2.0.0" sources."strip-json-comments-3.1.1" sources."supports-color-7.2.0" - (sources."table-6.7.2" // { + (sources."table-6.7.3" // { dependencies = [ - sources."ajv-8.6.3" + sources."ajv-8.7.1" sources."ansi-regex-5.0.1" sources."json-schema-traverse-1.0.0" sources."strip-ansi-6.0.1" @@ -124193,17 +128051,17 @@ in webpack = nodeEnv.buildNodePackage { name = "webpack"; packageName = "webpack"; - version = "5.61.0"; + version = "5.64.0"; src = fetchurl { - url = "https://registry.npmjs.org/webpack/-/webpack-5.61.0.tgz"; - sha512 = "fPdTuaYZ/GMGFm4WrPi2KRCqS1vDp773kj9S0iI5Uc//5cszsFEDgHNaX4Rj1vobUiU1dFIV3mA9k1eHeluFpw=="; + url = "https://registry.npmjs.org/webpack/-/webpack-5.64.0.tgz"; + sha512 = "UclnN24m054HaPC45nmDEosX6yXWD+UGC12YtUs5i356DleAUGMDC9LBAw37xRRfgPKYIdCYjGA7RZ1AA+ZnGg=="; }; dependencies = [ sources."@types/eslint-7.28.2" sources."@types/eslint-scope-3.7.1" sources."@types/estree-0.0.50" sources."@types/json-schema-7.0.9" - sources."@types/node-16.11.6" + sources."@types/node-16.11.7" sources."@webassemblyjs/ast-1.11.1" sources."@webassemblyjs/floating-point-hex-parser-1.11.1" sources."@webassemblyjs/helper-api-error-1.11.1" @@ -124227,10 +128085,10 @@ in sources."ajv-keywords-3.5.2" sources."browserslist-4.17.6" sources."buffer-from-1.1.2" - sources."caniuse-lite-1.0.30001274" + sources."caniuse-lite-1.0.30001280" sources."chrome-trace-event-1.0.3" sources."commander-2.20.3" - sources."electron-to-chromium-1.3.887" + sources."electron-to-chromium-1.3.895" sources."enhanced-resolve-5.8.3" sources."es-module-lexer-0.9.3" sources."escalade-3.1.1" @@ -124252,11 +128110,10 @@ in sources."json-schema-traverse-0.4.1" sources."loader-runner-4.2.0" sources."merge-stream-2.0.0" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."neo-async-2.6.2" sources."node-releases-2.0.1" - sources."p-limit-3.1.0" sources."picocolors-1.0.0" sources."punycode-2.1.1" sources."randombytes-2.1.0" @@ -124272,11 +128129,10 @@ in sources."source-map-0.7.3" ]; }) - sources."terser-webpack-plugin-5.2.4" + sources."terser-webpack-plugin-5.2.5" sources."uri-js-4.4.1" sources."watchpack-2.2.0" sources."webpack-sources-3.2.1" - sources."yocto-queue-0.1.0" ]; buildInputs = globalBuildInputs; meta = { @@ -124370,7 +128226,7 @@ in sources."@nodelib/fs.walk-1.2.8" sources."@types/http-proxy-1.17.7" sources."@types/json-schema-7.0.9" - sources."@types/node-16.11.6" + sources."@types/node-16.11.7" sources."@types/retry-0.12.1" sources."accepts-1.3.7" sources."aggregate-error-3.1.0" @@ -124484,7 +128340,7 @@ in sources."http-proxy-middleware-2.0.1" sources."human-signals-2.1.0" sources."iconv-lite-0.4.24" - sources."ignore-5.1.8" + sources."ignore-5.1.9" sources."indent-string-4.0.0" sources."inflight-1.0.6" sources."inherits-2.0.4" @@ -124522,8 +128378,8 @@ in sources."methods-1.1.2" sources."micromatch-4.0.4" sources."mime-1.6.0" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."mimic-fn-2.1.0" sources."minimalistic-assert-1.0.1" sources."minimatch-3.0.4" @@ -124665,10 +128521,10 @@ in copy-webpack-plugin = nodeEnv.buildNodePackage { name = "copy-webpack-plugin"; packageName = "copy-webpack-plugin"; - version = "9.0.1"; + version = "9.1.0"; src = fetchurl { - url = "https://registry.npmjs.org/copy-webpack-plugin/-/copy-webpack-plugin-9.0.1.tgz"; - sha512 = "14gHKKdYIxF84jCEgPgYXCPpldbwpxxLbCmA7LReY7gvbaT555DgeBWBgBZM116tv/fO6RRJrsivBqRyRlukhw=="; + url = "https://registry.npmjs.org/copy-webpack-plugin/-/copy-webpack-plugin-9.1.0.tgz"; + sha512 = "rxnR7PaGigJzhqETHGmAcxKnLZSR5u1Y3/bcIv/1FnqXedcL/E2ewK7ZCNrArJKCiSv8yVXhTqetJh8inDvfsA=="; }; dependencies = [ sources."@nodelib/fs.scandir-2.1.5" @@ -124691,7 +128547,7 @@ in sources."fill-range-7.0.1" sources."glob-parent-6.0.2" sources."globby-11.0.4" - sources."ignore-5.1.8" + sources."ignore-5.1.9" sources."is-extglob-2.1.1" sources."is-glob-4.0.3" sources."is-number-7.0.0" @@ -124699,7 +128555,6 @@ in sources."merge2-1.4.1" sources."micromatch-4.0.4" sources."normalize-path-3.0.0" - sources."p-limit-3.1.0" sources."path-type-4.0.0" sources."picomatch-2.3.0" sources."punycode-2.1.1" @@ -124713,7 +128568,6 @@ in sources."slash-3.0.0" sources."to-regex-range-5.0.1" sources."uri-js-4.4.1" - sources."yocto-queue-0.1.0" ]; buildInputs = globalBuildInputs; meta = { @@ -124746,7 +128600,7 @@ in sources."@protobufjs/pool-1.1.0" sources."@protobufjs/utf8-1.1.0" sources."@types/long-4.0.1" - sources."@types/node-16.11.6" + sources."@types/node-16.11.7" sources."addr-to-ip-port-1.5.4" sources."airplay-js-0.3.0" sources."ansi-regex-5.0.1" @@ -124820,7 +128674,7 @@ in sources."clone-2.1.2" sources."color-convert-2.0.1" sources."color-name-1.1.4" - sources."common-tags-1.8.0" + sources."common-tags-1.8.1" sources."compact2string-1.4.1" sources."concat-map-0.0.1" (sources."concat-stream-1.6.2" // { @@ -124956,7 +128810,7 @@ in sources."queue-microtask-1.2.3" sources."queue-tick-1.0.0" sources."random-access-file-2.2.0" - sources."random-access-storage-1.4.1" + sources."random-access-storage-1.4.2" sources."random-iterate-1.0.1" sources."randombytes-2.1.0" sources."range-parser-1.2.1" @@ -125118,15 +128972,15 @@ in yaml-language-server = nodeEnv.buildNodePackage { name = "yaml-language-server"; packageName = "yaml-language-server"; - version = "1.1.0"; + version = "1.2.0"; src = fetchurl { - url = "https://registry.npmjs.org/yaml-language-server/-/yaml-language-server-1.1.0.tgz"; - sha512 = "NEU2pSP4xoQ3aEgOyBDNJz2dAoTAZhGy1adMRT7kYiEzKL2UDMgFiQuspGOGyDPAv5aFICmqxpDP09ZW12AXhQ=="; + url = "https://registry.npmjs.org/yaml-language-server/-/yaml-language-server-1.2.0.tgz"; + sha512 = "ZsQ2uONwleQbFJFdKWBicHmM21jxkzfLI3gLmr7qKBnnRI3ZG4r3gsGbMPASnKTBLBW3l+e8c7KfzS7H3iAQMQ=="; }; dependencies = [ sources."jsonc-parser-3.0.0" sources."request-light-0.5.4" - sources."vscode-json-languageservice-4.1.9" + sources."vscode-json-languageservice-4.1.10" sources."vscode-jsonrpc-6.0.0" sources."vscode-languageserver-7.0.0" sources."vscode-languageserver-protocol-3.16.0" @@ -125172,7 +129026,7 @@ in sources."glob-7.2.0" sources."graceful-fs-4.2.8" sources."has-flag-4.0.0" - sources."ignore-5.1.8" + sources."ignore-5.1.9" sources."ignore-walk-3.0.4" sources."inflight-1.0.6" sources."inherits-2.0.4" @@ -125233,13 +129087,13 @@ in sha512 = "0V5CpR62BY1EOevIxXq5BL84YJeIunEzRsFlqb00tc7D77I51/0bvgdGRZhEwhNI2rFxKZ1i77eoisT56gfMTQ=="; }; dependencies = [ - sources."@babel/runtime-7.16.0" + sources."@babel/runtime-7.16.3" sources."@gar/promisify-1.1.2" sources."@isaacs/string-locale-compare-1.1.0" sources."@nodelib/fs.scandir-2.1.5" sources."@nodelib/fs.stat-2.0.5" sources."@nodelib/fs.walk-1.2.8" - (sources."@npmcli/arborist-2.10.0" // { + (sources."@npmcli/arborist-4.0.4" // { dependencies = [ sources."mkdirp-1.0.4" sources."semver-7.3.5" @@ -125258,8 +129112,8 @@ in ]; }) sources."@npmcli/installed-package-contents-1.0.7" - sources."@npmcli/map-workspaces-1.0.4" - (sources."@npmcli/metavuln-calculator-1.1.1" // { + sources."@npmcli/map-workspaces-2.0.0" + (sources."@npmcli/metavuln-calculator-2.0.0" // { dependencies = [ sources."semver-7.3.5" ]; @@ -125273,7 +129127,7 @@ in sources."@npmcli/node-gyp-1.0.3" sources."@npmcli/package-json-1.0.1" sources."@npmcli/promise-spawn-1.3.2" - sources."@npmcli/run-script-1.8.6" + sources."@npmcli/run-script-2.0.0" sources."@sindresorhus/is-0.7.0" sources."@tootallnate/once-1.1.2" sources."@types/expect-1.20.4" @@ -125312,7 +129166,7 @@ in sources."array-union-2.1.0" sources."arrify-2.0.1" sources."asap-2.0.6" - sources."asn1-0.2.4" + sources."asn1-0.2.6" sources."assert-plus-1.0.0" sources."astral-regex-1.0.0" sources."async-2.6.3" @@ -125382,6 +129236,7 @@ in sources."code-point-at-1.1.0" sources."color-convert-1.9.3" sources."color-name-1.1.3" + sources."color-support-1.1.3" sources."colors-1.0.3" sources."combined-stream-1.0.8" sources."commander-7.1.0" @@ -125519,8 +129374,8 @@ in sources."humanize-string-1.0.2" sources."iconv-lite-0.4.24" sources."ieee754-1.2.1" - sources."ignore-5.1.8" - sources."ignore-walk-3.0.4" + sources."ignore-5.1.9" + sources."ignore-walk-4.0.1" sources."import-lazy-2.1.0" sources."imurmurhash-0.1.4" sources."indent-string-4.0.0" @@ -125647,8 +129502,8 @@ in sources."merge-stream-2.0.0" sources."merge2-1.4.1" sources."micromatch-4.0.4" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."mimic-fn-2.1.0" sources."mimic-response-1.0.1" sources."minimatch-3.0.4" @@ -125672,7 +129527,7 @@ in sources."mute-stream-0.0.7" sources."negotiator-0.6.2" sources."nice-try-1.0.5" - (sources."node-gyp-7.1.2" // { + (sources."node-gyp-8.4.0" // { dependencies = [ sources."ansi-regex-2.1.1" sources."env-paths-2.2.1" @@ -125713,7 +129568,7 @@ in sources."semver-7.3.5" ]; }) - sources."npm-packlist-2.2.2" + sources."npm-packlist-3.0.0" (sources."npm-pick-manifest-6.1.1" // { dependencies = [ sources."semver-7.3.5" @@ -125768,9 +129623,15 @@ in }) sources."p-some-4.1.0" sources."p-timeout-2.0.1" + (sources."p-transform-1.3.0" // { + dependencies = [ + sources."debug-4.3.2" + sources."ms-2.1.2" + ]; + }) sources."p-try-1.0.0" sources."package-json-5.0.0" - (sources."pacote-11.3.5" // { + (sources."pacote-12.0.2" // { dependencies = [ sources."mkdirp-1.0.4" ]; @@ -126075,11 +129936,12 @@ in ]; }) sources."yeoman-doctor-5.0.0" - (sources."yeoman-environment-3.6.0" // { + (sources."yeoman-environment-3.8.0" // { dependencies = [ sources."ansi-escapes-4.3.2" - sources."ansi-regex-2.1.1" + sources."ansi-regex-5.0.1" sources."ansi-styles-4.3.0" + sources."are-we-there-yet-2.0.0" sources."chalk-4.1.2" sources."cli-cursor-3.1.0" sources."cli-width-3.0.0" @@ -126095,11 +129957,11 @@ in ]; }) sources."find-up-5.0.0" - (sources."gauge-2.7.4" // { + (sources."gauge-3.0.1" // { dependencies = [ - sources."is-fullwidth-code-point-1.0.0" - sources."string-width-1.0.2" - sources."strip-ansi-3.0.1" + sources."is-fullwidth-code-point-2.0.0" + sources."string-width-2.1.1" + sources."strip-ansi-4.0.0" ]; }) sources."get-stream-6.0.1" @@ -126112,23 +129974,20 @@ in sources."ms-2.1.2" sources."mute-stream-0.0.8" sources."npm-run-path-4.0.1" - sources."npmlog-4.1.2" + sources."npmlog-5.0.1" sources."onetime-5.1.2" sources."p-limit-3.1.0" sources."p-locate-5.0.0" sources."path-exists-4.0.0" sources."path-key-3.1.1" + sources."readable-stream-3.6.0" sources."restore-cursor-3.1.0" sources."rxjs-7.4.0" sources."semver-7.3.5" sources."shebang-command-2.0.0" sources."shebang-regex-3.0.0" sources."string-width-4.2.3" - (sources."strip-ansi-6.0.1" // { - dependencies = [ - sources."ansi-regex-5.0.1" - ]; - }) + sources."strip-ansi-6.0.1" sources."supports-color-7.2.0" sources."tslib-2.1.0" sources."type-fest-0.21.3" @@ -126173,7 +130032,7 @@ in sources."@nodelib/fs.walk-1.2.8" sources."@types/fs-extra-9.0.13" sources."@types/minimist-1.2.2" - sources."@types/node-16.11.6" + sources."@types/node-16.11.7" sources."@types/node-fetch-2.5.12" sources."ansi-styles-4.3.0" sources."array-union-3.0.1" @@ -126197,7 +130056,7 @@ in sources."globby-12.0.2" sources."graceful-fs-4.2.8" sources."has-flag-4.0.0" - sources."ignore-5.1.8" + sources."ignore-5.1.9" sources."is-extglob-2.1.1" sources."is-glob-4.0.3" sources."is-number-7.0.0" @@ -126206,8 +130065,8 @@ in sources."map-stream-0.1.0" sources."merge2-1.4.1" sources."micromatch-4.0.4" - sources."mime-db-1.50.0" - sources."mime-types-2.1.33" + sources."mime-db-1.51.0" + sources."mime-types-2.1.34" sources."minimist-1.2.5" sources."node-fetch-2.6.6" sources."path-type-4.0.0" diff --git a/pkgs/development/ocaml-modules/afl-persistent/default.nix b/pkgs/development/ocaml-modules/afl-persistent/default.nix index 5625cd95764f..ba266ade830e 100644 --- a/pkgs/development/ocaml-modules/afl-persistent/default.nix +++ b/pkgs/development/ocaml-modules/afl-persistent/default.nix @@ -12,7 +12,7 @@ stdenv.mkDerivation rec { sha256 = "06yyds2vcwlfr2nd3gvyrazlijjcrd1abnvkfpkaadgwdw3qam1i"; }; - buildInputs = [ ocaml findlib ]; + nativeBuildInputs = [ ocaml findlib ]; # don't run tests in buildPhase # don't overwrite test binary diff --git a/pkgs/development/ocaml-modules/bin_prot/default.nix b/pkgs/development/ocaml-modules/bin_prot/default.nix index 50ef935aff6b..3aa7cf0ec134 100644 --- a/pkgs/development/ocaml-modules/bin_prot/default.nix +++ b/pkgs/development/ocaml-modules/bin_prot/default.nix @@ -5,7 +5,7 @@ then throw "bin_prot-112.24.00 is not available for OCaml ${ocaml.version}" else buildOcaml rec { - name = "bin_prot"; + pname = "bin_prot"; version = "112.24.00"; minimumSupportedOcamlVersion = "4.00"; diff --git a/pkgs/development/ocaml-modules/bistro/default.nix b/pkgs/development/ocaml-modules/bistro/default.nix index c63f3f796ae7..87ab3d409e07 100644 --- a/pkgs/development/ocaml-modules/bistro/default.nix +++ b/pkgs/development/ocaml-modules/bistro/default.nix @@ -1,40 +1,40 @@ -{ lib, fetchFromGitHub, fetchpatch, buildDunePackage -, base64, bos, core, lwt_react, ocamlgraph, rresult, tyxml +{ lib +, ocaml +, fetchFromGitHub +, buildDunePackage +, base64 +, bos +, core +, lwt_react +, ocamlgraph +, ppx_sexp_conv +, rresult +, sexplib +, tyxml }: buildDunePackage rec { pname = "bistro"; - version = "0.5.0"; + version = "unstable-2021-07-13"; useDune2 = true; src = fetchFromGitHub { owner = "pveber"; repo = pname; - rev = "v${version}"; - sha256 = "114gq48cpj2mvycypa9lfyqqb26wa2gkdfwkcqhnx7m6sdwv9a38"; + rev = "4ce8d98f34f15ebf63ececccc9c763fec2b5fa6d"; + sha256 = "sha256:16vxcdsj4dmswgm6igshs3hirz8jrg8l5b2xgcnxxgvsrc9sxljs"; }; - patches = [ - # The following patch adds support for core.v0.13 - (fetchpatch { - url = "https://github.com/pveber/bistro/commit/0931db43a146ad7829dff5120161a775f732a878.patch"; - sha256 = "06y0sxbbab1mssc1xfjjv12lpv4rny5iqv9qkdqyzrvzpl1bdvnd"; - }) - # The following patch adds support for core.v0.14 - (fetchpatch { - url = "https://github.com/pveber/bistro/commit/afbdcb2af7777ef7711c7f3c45dff605350a27b2.patch"; - sha256 = "0ix6lx9qjnn3vqp0164c6l5an8b4rq69h2mxrg89piyk2g1yv0zg"; - }) - ]; - # Fix build with ppxlib 0.23 postPatch = '' - substituteInPlace ppx/ppx_bistro.ml \ + substituteInPlace ppx/bistro_script.ml \ --replace 'Parser.parse_expression' 'Ocaml_common.Parser.parse_expression' ''; - propagatedBuildInputs = [ base64 bos core lwt_react ocamlgraph rresult tyxml ]; + propagatedBuildInputs = [ + base64 bos core lwt_react ocamlgraph ppx_sexp_conv rresult sexplib tyxml + ]; minimalOCamlVersion = "4.12"; @@ -43,5 +43,7 @@ buildDunePackage rec { description = "Build and execute typed scientific workflows"; maintainers = [ lib.maintainers.vbgl ]; license = lib.licenses.gpl2; + # ppx-related build failure; see https://github.com/pveber/bistro/issues/49: + broken = lib.versionAtLeast ocaml.version "4.13"; }; } diff --git a/pkgs/development/ocaml-modules/comparelib/default.nix b/pkgs/development/ocaml-modules/comparelib/default.nix index addba7a4b349..a1371e4f4d5e 100644 --- a/pkgs/development/ocaml-modules/comparelib/default.nix +++ b/pkgs/development/ocaml-modules/comparelib/default.nix @@ -1,7 +1,7 @@ {lib, buildOcaml, fetchurl, type_conv}: buildOcaml rec { - name = "comparelib"; + pname = "comparelib"; version = "113.00.00"; minimumSupportedOcamlVersion = "4.00"; diff --git a/pkgs/development/ocaml-modules/eliom/default.nix b/pkgs/development/ocaml-modules/eliom/default.nix index 79c7a650cffd..4e2714fedd26 100644 --- a/pkgs/development/ocaml-modules/eliom/default.nix +++ b/pkgs/development/ocaml-modules/eliom/default.nix @@ -1,8 +1,6 @@ { stdenv, lib, fetchzip, which, ocsigen_server, ocaml, lwt_react, opaline, ppx_deriving, findlib -, ocaml-migrate-parsetree -, ppx_tools_versioned , js_of_ocaml-ocamlbuild, js_of_ocaml-ppx, js_of_ocaml-ppx_deriving_json , js_of_ocaml-lwt , js_of_ocaml-tyxml @@ -13,17 +11,15 @@ stdenv.mkDerivation rec { pname = "eliom"; - version = "8.6.0"; + version = "8.9.0"; src = fetchzip { url = "https://github.com/ocsigen/eliom/archive/${version}.tar.gz"; - sha256 = "0s1hpawwhqp4qcy8w1067n8c6zg8jcjpzplc39bjbb1ycqw667j9"; + sha256 = "sha256:1b1vb3ilb54ffzb98mqa6zggqchsnjspbni8qxi6j42pbajp7p2l"; }; buildInputs = [ ocaml which findlib js_of_ocaml-ocamlbuild - ocaml-migrate-parsetree js_of_ocaml-ppx_deriving_json opaline - ppx_tools_versioned ocamlnet ]; diff --git a/pkgs/development/ocaml-modules/elpi/default.nix b/pkgs/development/ocaml-modules/elpi/default.nix index f04c3b1fe253..4412f568508c 100644 --- a/pkgs/development/ocaml-modules/elpi/default.nix +++ b/pkgs/development/ocaml-modules/elpi/default.nix @@ -1,5 +1,7 @@ { stdenv, lib, fetchzip, buildDunePackage, camlp5 -, ppxlib, ppx_deriving, re, perl, ncurses +, re, perl, ncurses +, ppxlib, ppx_deriving +, ppxlib_0_15, ppx_deriving_0_15 , version ? "1.13.7" }: with lib; @@ -23,7 +25,11 @@ buildDunePackage rec { buildInputs = [ perl ncurses ]; - propagatedBuildInputs = [ camlp5 ppxlib ppx_deriving re ]; + propagatedBuildInputs = [ camlp5 re ] + ++ (if lib.versionAtLeast version "1.13" + then [ ppxlib ppx_deriving ] + else [ ppxlib_0_15 ppx_deriving_0_15 ] + ); meta = { description = "Embeddable λProlog Interpreter"; diff --git a/pkgs/development/ocaml-modules/estring/default.nix b/pkgs/development/ocaml-modules/estring/default.nix index 7424d14220dc..c0cc3398763c 100644 --- a/pkgs/development/ocaml-modules/estring/default.nix +++ b/pkgs/development/ocaml-modules/estring/default.nix @@ -5,7 +5,7 @@ then throw "estring is not available for OCaml ${ocaml.version}" else buildOcaml rec { - name = "estring"; + pname = "estring"; version = "1.3"; src = fetchurl { diff --git a/pkgs/development/ocaml-modules/faillib/default.nix b/pkgs/development/ocaml-modules/faillib/default.nix index 63040fadda5d..e2d90e06bdb5 100644 --- a/pkgs/development/ocaml-modules/faillib/default.nix +++ b/pkgs/development/ocaml-modules/faillib/default.nix @@ -6,7 +6,7 @@ else buildOcaml rec { minimumSupportedOcamlVersion = "4.00"; - name = "faillib"; + pname = "faillib"; version = "111.17.00"; src = fetchurl { diff --git a/pkgs/development/ocaml-modules/genspio/default.nix b/pkgs/development/ocaml-modules/genspio/default.nix index 7e7b3a0b9aee..db3c42bca36c 100644 --- a/pkgs/development/ocaml-modules/genspio/default.nix +++ b/pkgs/development/ocaml-modules/genspio/default.nix @@ -24,7 +24,7 @@ buildDunePackage rec { doCheck = true; meta = with lib; { - homepage = https://smondet.gitlab.io/genspio-doc/; + homepage = "https://smondet.gitlab.io/genspio-doc/"; description = "Typed EDSL to generate POSIX Shell scripts"; license = licenses.asl20; maintainers = [ maintainers.alexfmpe ]; diff --git a/pkgs/development/ocaml-modules/herelib/default.nix b/pkgs/development/ocaml-modules/herelib/default.nix index c5223637a158..b6f05fc46af3 100644 --- a/pkgs/development/ocaml-modules/herelib/default.nix +++ b/pkgs/development/ocaml-modules/herelib/default.nix @@ -2,7 +2,7 @@ buildOcaml rec { version = "112.35.00"; - name = "herelib"; + pname = "herelib"; minimumSupportedOcamlVersion = "4.00"; diff --git a/pkgs/development/ocaml-modules/hidapi/default.nix b/pkgs/development/ocaml-modules/hidapi/default.nix index 0de997881c2c..2caa25654e39 100644 --- a/pkgs/development/ocaml-modules/hidapi/default.nix +++ b/pkgs/development/ocaml-modules/hidapi/default.nix @@ -21,7 +21,7 @@ buildDunePackage rec { doCheck = true; meta = with lib; { - homepage = https://github.com/vbmithr/ocaml-hidapi; + homepage = "https://github.com/vbmithr/ocaml-hidapi"; description = "Bindings to Signal11's hidapi library"; license = licenses.isc; maintainers = [ maintainers.alexfmpe ]; diff --git a/pkgs/development/ocaml-modules/inifiles/default.nix b/pkgs/development/ocaml-modules/inifiles/default.nix index ad9bd3e2dc71..7e2659381148 100644 --- a/pkgs/development/ocaml-modules/inifiles/default.nix +++ b/pkgs/development/ocaml-modules/inifiles/default.nix @@ -4,7 +4,7 @@ stdenv.mkDerivation { name = "ocaml${ocaml.version}-inifiles-1.2"; src = fetchurl { - url = "http://archive.ubuntu.com/ubuntu/pool/universe/o/ocaml-inifiles/ocaml-inifiles_1.2.orig.tar.gz"; + url = "mirror://ubuntu/pool/universe/o/ocaml-inifiles/ocaml-inifiles_1.2.orig.tar.gz"; sha256 = "0jhzgiypmh6hwsv1zpiq77fi0cvcmwbiy5x0yg7mz6p3dh1dmkns"; }; diff --git a/pkgs/development/ocaml-modules/janestreet/buildOcamlJane.nix b/pkgs/development/ocaml-modules/janestreet/buildOcamlJane.nix index 62876e5eaf94..13fcdff39239 100644 --- a/pkgs/development/ocaml-modules/janestreet/buildOcamlJane.nix +++ b/pkgs/development/ocaml-modules/janestreet/buildOcamlJane.nix @@ -1,14 +1,14 @@ { buildOcaml, opaline, js_build_tools, ocaml_oasis, fetchurl } : -{ name, version ? "113.33.03", buildInputs ? [], +{ pname, version ? "113.33.03", buildInputs ? [], hash ? "", minimumSupportedOcamlVersion ? "4.02", ... }@args: buildOcaml (args // { - inherit name version minimumSupportedOcamlVersion; + inherit pname version minimumSupportedOcamlVersion; src = fetchurl { - url = "https://github.com/janestreet/${name}/archive/${version}.tar.gz"; + url = "https://github.com/janestreet/${pname}/archive/${version}.tar.gz"; sha256 = hash; }; @@ -20,10 +20,16 @@ buildOcaml (args // { dontAddStaticConfigureFlags = true; configurePlatforms = []; - configurePhase = "./configure --prefix $out"; + configurePhase = '' + ./configure --prefix $out + ''; - buildPhase = "OCAML_TOPLEVEL_PATH=`ocamlfind query findlib`/.. make"; + buildPhase = '' + OCAML_TOPLEVEL_PATH=`ocamlfind query findlib`/.. make + ''; - installPhase = "opaline -prefix $prefix -libdir $OCAMLFIND_DESTDIR ${name}.install"; + installPhase = '' + opaline -prefix $prefix -libdir $OCAMLFIND_DESTDIR ${pname}.install + ''; }) diff --git a/pkgs/development/ocaml-modules/janestreet/js-build-tools.nix b/pkgs/development/ocaml-modules/janestreet/js-build-tools.nix index 2f68ee8230e7..4186b0649bad 100644 --- a/pkgs/development/ocaml-modules/janestreet/js-build-tools.nix +++ b/pkgs/development/ocaml-modules/janestreet/js-build-tools.nix @@ -1,13 +1,13 @@ { lib, buildOcaml, fetchurl, ocaml_oasis, opaline }: buildOcaml rec { - name = "js-build-tools"; + pname = "js-build-tools"; version = "113.33.06"; minimumSupportedOcamlVersion = "4.02"; src = fetchurl { - url = "https://github.com/janestreet/${name}/archive/${version}.tar.gz"; + url = "https://github.com/janestreet/js-build-tools/archive/${version}.tar.gz"; sha256 = "1nvgyp4gsnlnpix3li6kr90b12iin5ihichv298p03i6h2809dia"; }; @@ -19,7 +19,7 @@ buildOcaml rec { dontAddStaticConfigureFlags = true; configurePlatforms = []; configurePhase = "./configure --prefix $prefix"; - installPhase = "opaline -prefix $prefix -libdir $OCAMLFIND_DESTDIR ${name}.install"; + installPhase = "opaline -prefix $prefix -libdir $OCAMLFIND_DESTDIR js-build-tools.install"; patches = [ ./js-build-tools-darwin.patch ]; diff --git a/pkgs/development/ocaml-modules/lwt/camlp4.nix b/pkgs/development/ocaml-modules/lwt/camlp4.nix index fbf920d9621d..88bb3d6759a0 100644 --- a/pkgs/development/ocaml-modules/lwt/camlp4.nix +++ b/pkgs/development/ocaml-modules/lwt/camlp4.nix @@ -2,7 +2,7 @@ buildDunePackage rec { pname = "lwt_camlp4"; - version = "git-20180325"; + version = "unstable-2018-03-25"; src = fetchFromGitHub { owner = "ocsigen"; diff --git a/pkgs/development/ocaml-modules/lwt/default.nix b/pkgs/development/ocaml-modules/lwt/default.nix index 7d6424564d2f..be15d2b72a54 100644 --- a/pkgs/development/ocaml-modules/lwt/default.nix +++ b/pkgs/development/ocaml-modules/lwt/default.nix @@ -17,9 +17,8 @@ buildDunePackage rec { sha256 = "0cq2qy23sa1a5zk6nja3c652mp29i84yfrkcwks6i8sdqwli36jy"; }; - nativeBuildInputs = [ pkg-config ]; - buildInputs = [ cppo dune-configurator ] - ++ optional (!versionAtLeast ocaml.version "4.08") ocaml-syntax-shims + nativeBuildInputs = [ pkg-config cppo dune-configurator ]; + buildInputs = optional (!versionAtLeast ocaml.version "4.08") ocaml-syntax-shims ++ optional (!versionAtLeast ocaml.version "4.07") ncurses; propagatedBuildInputs = [ libev mmap ocplib-endian seq result ]; diff --git a/pkgs/development/ocaml-modules/mrmime/default.nix b/pkgs/development/ocaml-modules/mrmime/default.nix index 6d3663509bc1..a5c2a68ee47b 100644 --- a/pkgs/development/ocaml-modules/mrmime/default.nix +++ b/pkgs/development/ocaml-modules/mrmime/default.nix @@ -36,15 +36,6 @@ buildDunePackage rec { useDune2 = true; - buildInputs = [ - afl-persistent - bigarray-compat - bigarray-overlap - bigstringaf - fpath - mirage-crypto-rng - ]; - propagatedBuildInputs = [ angstrom base64 @@ -59,6 +50,12 @@ buildDunePackage rec { rresult unstrctrd uutf + afl-persistent + bigarray-compat + bigarray-overlap + bigstringaf + fpath + mirage-crypto-rng ]; checkInputs = [ diff --git a/pkgs/development/ocaml-modules/nonstd/default.nix b/pkgs/development/ocaml-modules/nonstd/default.nix index a584f7bc9ed1..9de535154eeb 100644 --- a/pkgs/development/ocaml-modules/nonstd/default.nix +++ b/pkgs/development/ocaml-modules/nonstd/default.nix @@ -14,7 +14,7 @@ buildDunePackage rec { doCheck = true; meta = with lib; { - homepage = https://bitbucket.org/smondet/nonstd; + homepage = "https://bitbucket.org/smondet/nonstd"; description = "Non-standard mini-library"; license = licenses.isc; maintainers = [ maintainers.alexfmpe ]; diff --git a/pkgs/development/ocaml-modules/ocplib-endian/default.nix b/pkgs/development/ocaml-modules/ocplib-endian/default.nix index 2cb066a7c035..f2cf4acbf27b 100644 --- a/pkgs/development/ocaml-modules/ocplib-endian/default.nix +++ b/pkgs/development/ocaml-modules/ocplib-endian/default.nix @@ -11,7 +11,7 @@ buildDunePackage rec { useDune2 = true; - buildInputs = [ cppo ]; + nativeBuildInputs = [ cppo ]; meta = with lib; { description = "Optimised functions to read and write int16/32/64"; diff --git a/pkgs/development/ocaml-modules/pa_bench/default.nix b/pkgs/development/ocaml-modules/pa_bench/default.nix index e5f9ac52067d..a2de553961a4 100644 --- a/pkgs/development/ocaml-modules/pa_bench/default.nix +++ b/pkgs/development/ocaml-modules/pa_bench/default.nix @@ -1,7 +1,7 @@ {lib, buildOcaml, fetchurl, type_conv, pa_ounit}: buildOcaml rec { - name = "pa_bench"; + pname = "pa_bench"; version = "113.00.00"; minimumSupportedOcamlVersion = "4.00"; diff --git a/pkgs/development/ocaml-modules/pa_ounit/default.nix b/pkgs/development/ocaml-modules/pa_ounit/default.nix index 26d000042227..a9e49bab34a1 100644 --- a/pkgs/development/ocaml-modules/pa_ounit/default.nix +++ b/pkgs/development/ocaml-modules/pa_ounit/default.nix @@ -5,7 +5,7 @@ then throw "pa_ounit is not available for OCaml ${ocaml.version}" else buildOcaml rec { - name = "pa_ounit"; + pname = "pa_ounit"; version = "113.00.00"; src = fetchurl { diff --git a/pkgs/development/ocaml-modules/phylogenetics/default.nix b/pkgs/development/ocaml-modules/phylogenetics/default.nix index b284f7ef5eba..1a23a4d3e131 100644 --- a/pkgs/development/ocaml-modules/phylogenetics/default.nix +++ b/pkgs/development/ocaml-modules/phylogenetics/default.nix @@ -1,30 +1,50 @@ -{ lib, buildDunePackage, fetchFromGitHub, ppx_deriving -, alcotest, angstrom-unix, biocaml, gnuplot, gsl, lacaml, menhir, owl, printbox }: +{ lib +, buildDunePackage +, fetchurl +, ppx_deriving +, bppsuite +, alcotest +, angstrom-unix +, biocaml +, core +, gsl +, lacaml +, menhir +, menhirLib +, printbox +}: buildDunePackage rec { pname = "phylogenetics"; - version = "unstable-2020-11-23"; + version = "0.0.0"; useDune2 = true; - src = fetchFromGitHub { - owner = "biocaml"; - repo = pname; - rev = "e6e10efa0a3a8fd61bf4ab69e91a09549cc1ded6"; - sha256 = "0pmypzp0rvlpzm8zpbcfkphwnhrpyfwfv44kshvx2f8nslmksh8c"; + src = fetchurl { + url = "https://github.com/biocaml/phylogenetics/releases/download/v${version}/${pname}-${version}.tbz"; + sha256 = "sha256:0knfh2s0jfnsc0vsq5yw5xla7m7i98xd0qv512dyh3jhkh7m00l9"; }; - minimumOCamlVersion = "4.08"; # e.g., uses Float.min + minimalOCamlVersion = "4.08"; - checkInputs = [ alcotest ]; + checkInputs = [ alcotest bppsuite ]; buildInputs = [ menhir ]; - propagatedBuildInputs = [ angstrom-unix biocaml gnuplot gsl lacaml owl ppx_deriving printbox ]; + propagatedBuildInputs = [ + angstrom-unix + biocaml + core + gsl + lacaml + menhirLib + ppx_deriving + printbox + ]; - doCheck = false; # many tests require bppsuite + doCheck = true; meta = with lib; { - inherit (src.meta) homepage; - description = "Bioinformatics library for Ocaml"; + homepage = "https://github.com/biocaml/phylogenetics"; + description = "Algorithms and datastructures for phylogenetics"; maintainers = [ maintainers.bcdarwin ]; license = licenses.cecill-b; }; diff --git a/pkgs/development/ocaml-modules/pipebang/default.nix b/pkgs/development/ocaml-modules/pipebang/default.nix index 36eb3fe54bbe..96cfc82bc2fb 100644 --- a/pkgs/development/ocaml-modules/pipebang/default.nix +++ b/pkgs/development/ocaml-modules/pipebang/default.nix @@ -1,7 +1,7 @@ {lib, buildOcaml, fetchurl}: buildOcaml rec { - name = "pipebang"; + pname = "pipebang"; version = "113.00.00"; minimumSupportedOcamlVersion = "4.00"; diff --git a/pkgs/development/ocaml-modules/ppx_cstubs/default.nix b/pkgs/development/ocaml-modules/ppx_cstubs/default.nix index 6ad6c4cd8985..935d67f70845 100644 --- a/pkgs/development/ocaml-modules/ppx_cstubs/default.nix +++ b/pkgs/development/ocaml-modules/ppx_cstubs/default.nix @@ -15,6 +15,8 @@ buildDunePackage rec { pname = "ppx_cstubs"; version = "0.6.1.2"; + minimalOCamlVersion = "4.08"; + useDune2 = true; src = fetchFromGitHub { diff --git a/pkgs/development/ocaml-modules/sosa/default.nix b/pkgs/development/ocaml-modules/sosa/default.nix index 3687f2be9974..f244ad550bf1 100644 --- a/pkgs/development/ocaml-modules/sosa/default.nix +++ b/pkgs/development/ocaml-modules/sosa/default.nix @@ -26,7 +26,7 @@ stdenv.mkDerivation rec { doCheck = true; meta = with lib; { - homepage = http://www.hammerlab.org/docs/sosa/master/index.html; + homepage = "http://www.hammerlab.org/docs/sosa/master/index.html"; description = "Sane OCaml String API"; license = licenses.isc; maintainers = [ maintainers.alexfmpe ]; diff --git a/pkgs/development/ocaml-modules/type_conv/112.01.01.nix b/pkgs/development/ocaml-modules/type_conv/112.01.01.nix index 3fa9042b0351..c71bfa00e7ef 100644 --- a/pkgs/development/ocaml-modules/type_conv/112.01.01.nix +++ b/pkgs/development/ocaml-modules/type_conv/112.01.01.nix @@ -3,7 +3,7 @@ buildOcaml rec { minimumSupportedOcamlVersion = "4.02"; - name = "type_conv"; + pname = "type_conv"; version = "113.00.02"; src = fetchurl { diff --git a/pkgs/development/ocaml-modules/typerep/default.nix b/pkgs/development/ocaml-modules/typerep/default.nix index 5a38bd708f7b..c51d28f9e19b 100644 --- a/pkgs/development/ocaml-modules/typerep/default.nix +++ b/pkgs/development/ocaml-modules/typerep/default.nix @@ -1,7 +1,7 @@ { lib, buildOcaml, fetchFromGitHub, type_conv }: buildOcaml rec { - name = "typerep"; + pname = "typerep"; version = "112.24.00"; minimumSupportedOcamlVersion = "4.00"; diff --git a/pkgs/development/ocaml-modules/uecc/default.nix b/pkgs/development/ocaml-modules/uecc/default.nix index a9ba880531c4..f67980db2ff4 100644 --- a/pkgs/development/ocaml-modules/uecc/default.nix +++ b/pkgs/development/ocaml-modules/uecc/default.nix @@ -27,7 +27,7 @@ buildDunePackage rec { meta = { description = "Bindings for ECDH and ECDSA for 8-bit, 32-bit, and 64-bit processors"; - homepage = https://gitlab.com/nomadic-labs/ocaml-uecc; + homepage = "https://gitlab.com/nomadic-labs/ocaml-uecc"; license = lib.licenses.isc; maintainers = [ lib.maintainers.ulrikstrid ]; }; diff --git a/pkgs/development/ocaml-modules/variantslib/default.nix b/pkgs/development/ocaml-modules/variantslib/default.nix index aaddda3c11bc..25d379f51648 100644 --- a/pkgs/development/ocaml-modules/variantslib/default.nix +++ b/pkgs/development/ocaml-modules/variantslib/default.nix @@ -5,7 +5,7 @@ then throw "variantslib-109.15.03 is not available for OCaml ${ocaml.version}" else buildOcaml rec { - name = "variantslib"; + pname = "variantslib"; version = "109.15.03"; minimumSupportedOcamlVersion = "4.00"; diff --git a/pkgs/development/ocaml-modules/yuscii/default.nix b/pkgs/development/ocaml-modules/yuscii/default.nix index 6e1fbd9a8747..9d7b5d3c4d6b 100644 --- a/pkgs/development/ocaml-modules/yuscii/default.nix +++ b/pkgs/development/ocaml-modules/yuscii/default.nix @@ -1,6 +1,7 @@ { alcotest , buildDunePackage , fetchzip +, gcc , fmt , lib , uutf @@ -18,6 +19,7 @@ buildDunePackage rec { useDune2 = true; checkInputs = [ + gcc alcotest fmt uutf diff --git a/pkgs/development/php-packages/phpmd/default.nix b/pkgs/development/php-packages/phpmd/default.nix index 764d56475c42..763fd857c357 100644 --- a/pkgs/development/php-packages/phpmd/default.nix +++ b/pkgs/development/php-packages/phpmd/default.nix @@ -27,6 +27,6 @@ mkDerivation { license = licenses.bsd3; homepage = "https://phpmd.org/"; maintainers = teams.php.members; - broken = versionAtLeast php.version "7.4"; + broken = versionOlder php.version "7.4"; }; } diff --git a/pkgs/development/python-modules/FormEncode/default.nix b/pkgs/development/python-modules/FormEncode/default.nix index 08bcbaa6516a..4244d358c8dd 100644 --- a/pkgs/development/python-modules/FormEncode/default.nix +++ b/pkgs/development/python-modules/FormEncode/default.nix @@ -2,7 +2,6 @@ , buildPythonPackage , isPy27 , fetchPypi -, nose , setuptools-scm , six , dnspython diff --git a/pkgs/development/python-modules/adafruit-platformdetect/default.nix b/pkgs/development/python-modules/adafruit-platformdetect/default.nix index 70c2a93d46bd..17e304b6802c 100644 --- a/pkgs/development/python-modules/adafruit-platformdetect/default.nix +++ b/pkgs/development/python-modules/adafruit-platformdetect/default.nix @@ -6,19 +6,25 @@ buildPythonPackage rec { pname = "adafruit-platformdetect"; - version = "3.17.1"; + version = "3.17.2"; + format = "setuptools"; src = fetchPypi { pname = "Adafruit-PlatformDetect"; inherit version; - sha256 = "sha256-M+0q1u/ZcAg2Pii/B2n0v+rw/zIAjeVej/VThi9NLwI="; + sha256 = "sha256-IA846zNFmBqSUc0oXJ0eA5wj6PzQ28jxO22z5WNOT24="; }; - nativeBuildInputs = [ setuptools-scm ]; + nativeBuildInputs = [ + setuptools-scm + ]; # Project has not published tests yet doCheck = false; - pythonImportsCheck = [ "adafruit_platformdetect" ]; + + pythonImportsCheck = [ + "adafruit_platformdetect" + ]; meta = with lib; { description = "Platform detection for use by Adafruit libraries"; diff --git a/pkgs/development/python-modules/adax/default.nix b/pkgs/development/python-modules/adax/default.nix index 867b08e28a3d..c7b0dcb45b31 100644 --- a/pkgs/development/python-modules/adax/default.nix +++ b/pkgs/development/python-modules/adax/default.nix @@ -8,14 +8,16 @@ buildPythonPackage rec { pname = "adax"; - version = "0.1.1"; + version = "0.2.0"; + format = "setuptools"; + disabled = pythonOlder "3.5"; src = fetchFromGitHub { owner = "Danielhiversen"; repo = "pyadax"; rev = version; - sha256 = "sha256-ekpI5GTLbKjlbWH9GSmpp/3URurc7UN+agxMfyGxrVA="; + sha256 = "sha256-EMSX2acklwWOYiEeLHYG5mwdiGnWAUo5dGMiHCmZrko="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/aenum/default.nix b/pkgs/development/python-modules/aenum/default.nix index 64725e04d504..457a6007f8af 100644 --- a/pkgs/development/python-modules/aenum/default.nix +++ b/pkgs/development/python-modules/aenum/default.nix @@ -8,16 +8,17 @@ buildPythonPackage rec { pname = "aenum"; - version = "3.1.2"; + version = "3.1.3"; + format = "setuptools"; src = fetchPypi { inherit pname version; - sha256 = "806dd4791298e19daff2cdfe7be3ae6d931d0d03097973f802b3ea55066f62dd"; + sha256 = "sha256-HUlOTTs+PpU4mu5CAgPZRXdtJDDumj1PFi4mezp+w6Y="; }; checkInputs = [ pyparsing - ] ; + ]; # py2 likes to reorder tests doCheck = isPy3k; @@ -28,12 +29,14 @@ buildPythonPackage rec { runHook postCheck ''; - pythonImportsCheck = [ "aenum" ]; + pythonImportsCheck = [ + "aenum" + ]; meta = with lib; { description = "Advanced Enumerations (compatible with Python's stdlib Enum), NamedTuples, and NamedConstants"; - maintainers = with maintainers; [ vrthra ]; - license = licenses.bsd3; homepage = "https://github.com/ethanfurman/aenum"; + license = licenses.bsd3; + maintainers = with maintainers; [ vrthra ]; }; } diff --git a/pkgs/development/python-modules/afdko/default.nix b/pkgs/development/python-modules/afdko/default.nix index 802da2c68562..c06929176d98 100644 --- a/pkgs/development/python-modules/afdko/default.nix +++ b/pkgs/development/python-modules/afdko/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, buildPythonPackage, fetchPypi, fetchpatch, pythonOlder, python +{ lib, stdenv, buildPythonPackage, fetchPypi, fetchpatch, pythonOlder , fonttools, defcon, lxml, fs, unicodedata2, zopfli, brotlipy, fontpens , brotli, fontmath, mutatormath, booleanoperations , ufoprocessor, ufonormalizer, psautohint, tqdm diff --git a/pkgs/development/python-modules/agate/default.nix b/pkgs/development/python-modules/agate/default.nix index a2b622dd2116..04266bc3d883 100644 --- a/pkgs/development/python-modules/agate/default.nix +++ b/pkgs/development/python-modules/agate/default.nix @@ -1,37 +1,73 @@ -{ lib, fetchFromGitHub, buildPythonPackage, isPy3k -, six, pytimeparse, parsedatetime, Babel -, isodate, python-slugify, leather -, glibcLocales, nose, lxml, cssselect, unittest2 }: +{ lib +, Babel +, buildPythonPackage +, cssselect +, fetchFromGitHub +, glibcLocales +, isodate +, leather +, lxml +, nose +, parsedatetime +, PyICU +, python-slugify +, pytimeparse +, pythonOlder +, pytz +, six +}: buildPythonPackage rec { pname = "agate"; - version = "1.6.1"; + version = "1.6.3"; + format = "setuptools"; + + disabled = pythonOlder "3.6"; - # PyPI tarball does not include all test files - # https://github.com/wireservice/agate/pull/716 src = fetchFromGitHub { owner = "wireservice"; repo = pname; rev = version; - sha256 = "077zj8xad8hsa3nqywvf7ircirmx3krxdipl8wr3dynv3l3khcpl"; + sha256 = "sha256-tuUoLvztCYHIPJTBgw1eByM0zfaHDyc+h7SWsxutKos="; }; propagatedBuildInputs = [ - six pytimeparse parsedatetime Babel - isodate python-slugify leather + Babel + isodate + leather + parsedatetime + python-slugify + pytimeparse + six ]; - checkInputs = [ glibcLocales nose lxml cssselect ] - ++ lib.optional (!isPy3k) unittest2; + checkInputs = [ + cssselect + glibcLocales + lxml + nose + PyICU + pytz + ]; + + postPatch = '' + # No Python 2 support, thus constraint is not needed + substituteInPlace setup.py \ + --replace "'parsedatetime>=2.1,!=2.5,!=2.6'," "'parsedatetime>=2.1'," + ''; checkPhase = '' LC_ALL="en_US.UTF-8" nosetests tests ''; + pythonImportsCheck = [ + "agate" + ]; + meta = with lib; { - description = "A Python data analysis library that is optimized for humans instead of machines"; - homepage = "https://github.com/wireservice/agate"; - license = with licenses; [ mit ]; + description = "Python data analysis library that is optimized for humans instead of machines"; + homepage = "https://github.com/wireservice/agate"; + license = with licenses; [ mit ]; maintainers = with maintainers; [ vrthra ]; }; } diff --git a/pkgs/development/python-modules/ailment/default.nix b/pkgs/development/python-modules/ailment/default.nix index deb09f20f65e..025180d6869a 100644 --- a/pkgs/development/python-modules/ailment/default.nix +++ b/pkgs/development/python-modules/ailment/default.nix @@ -7,14 +7,14 @@ buildPythonPackage rec { pname = "ailment"; - version = "9.0.10339"; + version = "9.0.10534"; disabled = pythonOlder "3.6"; src = fetchFromGitHub { owner = "angr"; repo = pname; rev = "v${version}"; - sha256 = "sha256-wHIQMPoylCUiH4rhRfx7TA0+tzeOMDa7HTiBj03+ZDQ="; + sha256 = "sha256-EmfbyXHoWEd2Yp1RFRkW94dzeRXw0rsBtvVcl+Vg0qI="; }; propagatedBuildInputs = [ pyvex ]; diff --git a/pkgs/development/python-modules/aioambient/default.nix b/pkgs/development/python-modules/aioambient/default.nix index d60a62496cd9..b71574971fc8 100644 --- a/pkgs/development/python-modules/aioambient/default.nix +++ b/pkgs/development/python-modules/aioambient/default.nix @@ -16,18 +16,20 @@ buildPythonPackage rec { pname = "aioambient"; - version = "1.3.0"; + version = "2021.10.1"; format = "pyproject"; - disabled = pythonOlder "3.6"; + + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "bachya"; repo = pname; rev = version; - sha256 = "sha256-blejTXyLe3B2kNytBh+zJz0Q0xDP+Vo2SV9gc7OX6S0="; + sha256 = "sha256-DCh/o7p+lO5BhN3JoLdhImkzfxoyqiscA/6CwwvAnc0="; }; postPatch = '' + # https://github.com/bachya/aioambient/pull/97 substituteInPlace pyproject.toml \ --replace 'websockets = ">=8.1,<10.0"' 'websockets = ">=8.1,<11.0"' ''; @@ -52,9 +54,13 @@ buildPythonPackage rec { ]; # Ignore the examples directory as the files are prefixed with test_ - disabledTestPaths = [ "examples/" ]; + disabledTestPaths = [ + "examples/" + ]; - pythonImportsCheck = [ "aioambient" ]; + pythonImportsCheck = [ + "aioambient" + ]; meta = with lib; { description = "Python library for the Ambient Weather API"; diff --git a/pkgs/development/python-modules/aioasuswrt/default.nix b/pkgs/development/python-modules/aioasuswrt/default.nix index a6bd79e80ef1..c2a8bded2b6b 100644 --- a/pkgs/development/python-modules/aioasuswrt/default.nix +++ b/pkgs/development/python-modules/aioasuswrt/default.nix @@ -9,22 +9,18 @@ buildPythonPackage rec { pname = "aioasuswrt"; - version = "1.3.4"; + version = "1.4.0"; src = fetchFromGitHub { owner = "kennedyshead"; repo = pname; - rev = version; - sha256 = "101d76zarvilzfmcy8n3bjqzyars8hsjzr0zc80d4rngv4vhrki1"; + rev = "V${version}"; + sha256 = "1iv9f22v834g8wrjcynjn2azpzk8gsczv71jf7dw8aix0n04h325"; }; - postPatch = '' - substituteInPlace setup.cfg \ - --replace "--cov-report html" "" \ - --replace "--cov-report term-missing" "" - ''; - - propagatedBuildInputs = [ asyncssh ]; + propagatedBuildInputs = [ + asyncssh + ]; checkInputs = [ pytest-asyncio @@ -32,7 +28,15 @@ buildPythonPackage rec { pytestCheckHook ]; - pythonImportsCheck = [ "aioasuswrt" ]; + postPatch = '' + substituteInPlace setup.cfg \ + --replace "--cov-report html" "" \ + --replace "--cov-report term-missing" "" + ''; + + pythonImportsCheck = [ + "aioasuswrt" + ]; meta = with lib; { description = "Python module for Asuswrt"; diff --git a/pkgs/development/python-modules/aioeafm/default.nix b/pkgs/development/python-modules/aioeafm/default.nix index be91e0e95575..d8b8c11cef99 100644 --- a/pkgs/development/python-modules/aioeafm/default.nix +++ b/pkgs/development/python-modules/aioeafm/default.nix @@ -1,6 +1,5 @@ { lib , aiohttp -, async-timeout , buildPythonPackage , fetchFromGitHub , poetry diff --git a/pkgs/development/python-modules/aioesphomeapi/default.nix b/pkgs/development/python-modules/aioesphomeapi/default.nix index 890d43b01ff5..58b664b2cb1d 100644 --- a/pkgs/development/python-modules/aioesphomeapi/default.nix +++ b/pkgs/development/python-modules/aioesphomeapi/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "aioesphomeapi"; - version = "10.0.3"; + version = "10.2.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -21,7 +21,7 @@ buildPythonPackage rec { owner = "esphome"; repo = pname; rev = "v${version}"; - sha256 = "sha256-9K67vmPaPSR6ODl3tpwwfRMY9DDD/2cCaDRRO38mHVU="; + sha256 = "sha256-SUM9P7qmP3LWANw8LiwMsT5sN1kZJvqeaBT/ZDmTtwE="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/aiogithubapi/default.nix b/pkgs/development/python-modules/aiogithubapi/default.nix index 7ec85d90f7d3..9249df059bf0 100644 --- a/pkgs/development/python-modules/aiogithubapi/default.nix +++ b/pkgs/development/python-modules/aiogithubapi/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "aiogithubapi"; - version = "21.8.1"; + version = "21.11.0"; disabled = pythonOlder "3.8"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "ludeeus"; repo = pname; rev = version; - sha256 = "1l59bb956gymi2dkgg88mr0nc80wqvw2dv69qf4f1xr3jxy03qa2"; + sha256 = "sha256-sxWgLd+oQv9qNOpyAYXsBcqGbo/ugNXzGF5nbdcNLFw="; }; postPatch = '' diff --git a/pkgs/development/python-modules/aioguardian/default.nix b/pkgs/development/python-modules/aioguardian/default.nix index 08b1a1402dd9..439035229a76 100644 --- a/pkgs/development/python-modules/aioguardian/default.nix +++ b/pkgs/development/python-modules/aioguardian/default.nix @@ -4,24 +4,24 @@ , asyncio-dgram , asynctest , buildPythonPackage +, docutils , fetchFromGitHub , poetry-core , pytest-aiohttp , pytest-asyncio , pytestCheckHook -, pythonAtLeast , voluptuous }: buildPythonPackage rec { pname = "aioguardian"; - version = "2021.10.0"; + version = "2021.11.0"; src = fetchFromGitHub { owner = "bachya"; repo = pname; rev = version; - sha256 = "sha256-LKtuBMbpaVnp/eQ5hW1RQiArEBw4Lw+29y/q6Dq/tyI="; + sha256 = "sha256-jQIRACm0d0a5mQqlwxSTgLZfJFvGLWuJTb/MacppmS4="; }; format = "pyproject"; @@ -34,6 +34,7 @@ buildPythonPackage rec { aiohttp async-timeout asyncio-dgram + docutils voluptuous ]; @@ -45,9 +46,18 @@ buildPythonPackage rec { pytestCheckHook ]; - disabledTestPaths = [ "examples/" ]; + postPatch = '' + substituteInPlace pyproject.toml \ + --replace 'docutils = "<0.18"' 'docutils = "*"' + ''; - pythonImportsCheck = [ "aioguardian" ]; + disabledTestPaths = [ + "examples/" + ]; + + pythonImportsCheck = [ + "aioguardian" + ]; meta = with lib; { description = " Python library to interact with Elexa Guardian devices"; diff --git a/pkgs/development/python-modules/aiohomekit/default.nix b/pkgs/development/python-modules/aiohomekit/default.nix index 562a39a96f08..55513031fcf6 100644 --- a/pkgs/development/python-modules/aiohomekit/default.nix +++ b/pkgs/development/python-modules/aiohomekit/default.nix @@ -6,7 +6,6 @@ , poetry-core , pytest-aiohttp , pytestCheckHook -, pythonAtLeast , zeroconf }: diff --git a/pkgs/development/python-modules/aiohttp-remotes/default.nix b/pkgs/development/python-modules/aiohttp-remotes/default.nix index f3abbddfd957..70e3923ee726 100644 --- a/pkgs/development/python-modules/aiohttp-remotes/default.nix +++ b/pkgs/development/python-modules/aiohttp-remotes/default.nix @@ -1,14 +1,14 @@ -{ lib, fetchpatch, buildPythonPackage, fetchPypi +{ lib, buildPythonPackage, fetchPypi , aiohttp, pytest, pytest-cov, pytest-aiohttp }: buildPythonPackage rec { pname = "aiohttp_remotes"; - version = "1.0.0"; + version = "1.1.0"; src = fetchPypi { inherit pname version; - sha256 = "1vv2ancxsaxlls9sinigjnrqyx95n7cphq37m8nwifkhvs0idv6a"; + sha256 = "e44f2c5fd5fc3305477c89bb25f14570589100cc58c48b36745d4239839d3174"; }; propagatedBuildInputs = [ aiohttp ]; diff --git a/pkgs/development/python-modules/aiomusiccast/default.nix b/pkgs/development/python-modules/aiomusiccast/default.nix index e90e9ea11fd9..66f83bab8f2e 100644 --- a/pkgs/development/python-modules/aiomusiccast/default.nix +++ b/pkgs/development/python-modules/aiomusiccast/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "aiomusiccast"; - version = "0.12.0"; + version = "0.13.1"; format = "pyproject"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "vigonotion"; repo = "aiomusiccast"; rev = version; - sha256 = "sha256-LZaRxpjTNkrf8JAWTQLp5LcWOf+epXOnvidJl2tEEE4="; + sha256 = "sha256-y1rt2/nCi2xcNPMEqFGDv4ylWRXv2vfnA3++Qc2aWew="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/aionanoleaf/default.nix b/pkgs/development/python-modules/aionanoleaf/default.nix index 65b5e37f431b..a018acaf0e9b 100644 --- a/pkgs/development/python-modules/aionanoleaf/default.nix +++ b/pkgs/development/python-modules/aionanoleaf/default.nix @@ -3,7 +3,6 @@ , buildPythonPackage , fetchFromGitHub , pythonOlder -, pytestCheckHook }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/aiopvpc/default.nix b/pkgs/development/python-modules/aiopvpc/default.nix index efbe695673aa..74c85eb11a24 100644 --- a/pkgs/development/python-modules/aiopvpc/default.nix +++ b/pkgs/development/python-modules/aiopvpc/default.nix @@ -15,15 +15,16 @@ buildPythonPackage rec { pname = "aiopvpc"; - version = "2.2.0"; - disabled = pythonOlder "3.8"; + version = "2.2.2"; format = "pyproject"; + disabled = pythonOlder "3.8"; + src = fetchFromGitHub { owner = "azogue"; repo = pname; rev = "v${version}"; - sha256 = "1hk3giwzzlcqnpw9kx3zrr808nmdb7qwac60fki5395qffd2fpqw"; + sha256 = "sha256-wNMHzeKJ1kG0jnoI5fO3d5CBXE0cyoK92BkGunXK3pI="; }; nativeBuildInputs = [ @@ -49,7 +50,9 @@ buildPythonPackage rec { " --cov --cov-report term --cov-report html" "" ''; - pythonImportsCheck = [ "aiopvpc" ]; + pythonImportsCheck = [ + "aiopvpc" + ]; meta = with lib; { description = "Python module to download Spanish electricity hourly prices (PVPC)"; diff --git a/pkgs/development/python-modules/aiorecollect/default.nix b/pkgs/development/python-modules/aiorecollect/default.nix index 2f62a31e129c..79bc2a787b96 100644 --- a/pkgs/development/python-modules/aiorecollect/default.nix +++ b/pkgs/development/python-modules/aiorecollect/default.nix @@ -6,20 +6,22 @@ , freezegun , poetry-core , pytest-asyncio -, pytest-cov , pytestCheckHook +, pythonOlder }: buildPythonPackage rec { pname = "aiorecollect"; - version = "1.0.8"; + version = "2021.10.0"; format = "pyproject"; + disabled = pythonOlder "3.7"; + src = fetchFromGitHub { owner = "bachya"; repo = pname; rev = version; - sha256 = "sha256-5+v+TlLOgaIA8svpbgFSEWZAUVBRq3zqf8QbidKgygI="; + sha256 = "sha256-cLutszJ8VXGcqb8kZv7Qn1ZD/LRYjVgQWQxNMHNd0UQ="; }; nativeBuildInputs = [ @@ -34,13 +36,17 @@ buildPythonPackage rec { aresponses freezegun pytest-asyncio - pytest-cov pytestCheckHook ]; - disabledTestPaths = [ "examples/" ]; + disabledTestPaths = [ + # Ignore the examples directory as the files are prefixed with test_. + "examples/" + ]; - pythonImportsCheck = [ "aiorecollect" ]; + pythonImportsCheck = [ + "aiorecollect" + ]; meta = with lib; { description = "Python library for the Recollect Waste API"; diff --git a/pkgs/development/python-modules/aioshelly/default.nix b/pkgs/development/python-modules/aioshelly/default.nix index 104ec7af3c37..814444e63533 100644 --- a/pkgs/development/python-modules/aioshelly/default.nix +++ b/pkgs/development/python-modules/aioshelly/default.nix @@ -7,13 +7,13 @@ buildPythonPackage rec { pname = "aioshelly"; - version = "1.0.2"; + version = "1.0.4"; src = fetchFromGitHub { owner = "home-assistant-libs"; repo = pname; rev = version; - sha256 = "sha256-STJ9BDVbvlIMvKMiGwkGZ9Z32NvlE+3cyYduYlwTbx4="; + sha256 = "sha256-Om+v+cGisfx2PkH/J08loZioUO6y9wi5+6kd2T+dfOo="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/aiosmtpd/default.nix b/pkgs/development/python-modules/aiosmtpd/default.nix index c204261644c5..c19e39bcd48f 100644 --- a/pkgs/development/python-modules/aiosmtpd/default.nix +++ b/pkgs/development/python-modules/aiosmtpd/default.nix @@ -1,12 +1,21 @@ -{ lib, isPy3k, fetchFromGitHub, buildPythonPackage -, attrs, atpublic }: +{ lib +, atpublic +, attrs +, buildPythonPackage +, fetchFromGitHub +, pytest-mock +, pytestCheckHook +, pythonOlder +, typing-extensions +}: buildPythonPackage rec { pname = "aiosmtpd"; version = "1.4.2"; - disabled = !isPy3k; + format = "setuptools"; + + disabled = pythonOlder "3.6"; - # Release not published to Pypi src = fetchFromGitHub { owner = "aio-libs"; repo = pname; @@ -15,19 +24,34 @@ buildPythonPackage rec { }; propagatedBuildInputs = [ - atpublic attrs + atpublic + attrs + ] ++ lib.optionals (pythonOlder "3.8") [ + typing-extensions ]; - # Tests need network access - doCheck = false; + checkInputs = [ + pytest-mock + pytestCheckHook + ]; + + disabledTests = [ + # Requires git + "test_ge_master" + # Seems to be a sandbox issue + "test_byclient" + ]; + + pythonImportsCheck = [ + "aiosmtpd" + ]; meta = with lib; { - homepage = "https://aiosmtpd.readthedocs.io/en/latest/"; description = "Asyncio based SMTP server"; + homepage = "https://aiosmtpd.readthedocs.io/"; longDescription = '' This is a server for SMTP and related protocols, similar in utility to the - standard library's smtpd.py module, but rewritten to be based on asyncio for - Python 3. + standard library's smtpd.py module. ''; license = licenses.asl20; maintainers = with maintainers; [ eadwu ]; diff --git a/pkgs/development/python-modules/airtouch4pyapi/default.nix b/pkgs/development/python-modules/airtouch4pyapi/default.nix new file mode 100644 index 000000000000..193070ac7261 --- /dev/null +++ b/pkgs/development/python-modules/airtouch4pyapi/default.nix @@ -0,0 +1,38 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, numpy +, pythonOlder +}: + +buildPythonPackage rec { + pname = "airtouch4pyapi"; + version = "1.0.5"; + format = "setuptools"; + + disabled = pythonOlder "3.6"; + + src = fetchFromGitHub { + owner = "LonePurpleWolf"; + repo = pname; + # https://github.com/LonePurpleWolf/airtouch4pyapi/issues/5 + rev = "34783888846783c058fe79cec16feda45504f701"; + sha256 = "17c7fm72p085pg9msvsfdggbskvm12a6jlb5bw1cndrqsqcrxywx"; + }; + + propagatedBuildInputs = [ + numpy + ]; + + # Project has no tests + doCheck = false; + + pythonImportsCheck = [ "airtouch4pyapi" ]; + + meta = with lib; { + description = "Python API for Airtouch 4 controllers"; + homepage = "https://github.com/LonePurpleWolf/airtouch4pyapi"; + license = with licenses; [ mit ]; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/amberelectric/default.nix b/pkgs/development/python-modules/amberelectric/default.nix index 1d268afd551d..cd4984861432 100644 --- a/pkgs/development/python-modules/amberelectric/default.nix +++ b/pkgs/development/python-modules/amberelectric/default.nix @@ -5,7 +5,6 @@ , pytestCheckHook , python-dateutil , pythonOlder -, setuptools-scm , urllib3 }: diff --git a/pkgs/development/python-modules/androguard/default.nix b/pkgs/development/python-modules/androguard/default.nix index e7058205c54f..492c835f018e 100644 --- a/pkgs/development/python-modules/androguard/default.nix +++ b/pkgs/development/python-modules/androguard/default.nix @@ -1,5 +1,4 @@ { lib -, fetchpatch , buildPythonPackage , fetchFromGitHub , future diff --git a/pkgs/development/python-modules/android-backup/default.nix b/pkgs/development/python-modules/android-backup/default.nix index 319c9514183e..df2096582ccd 100644 --- a/pkgs/development/python-modules/android-backup/default.nix +++ b/pkgs/development/python-modules/android-backup/default.nix @@ -30,7 +30,7 @@ buildPythonPackage rec { meta = with lib; { description = "Unpack and repack android backups"; - homepage = https://github.com/bluec0re/android-backup-tools; + homepage = "https://github.com/bluec0re/android-backup-tools"; license = licenses.asl20; maintainers = with maintainers; [ dotlambda ]; }; diff --git a/pkgs/development/python-modules/angr/default.nix b/pkgs/development/python-modules/angr/default.nix index b5284b102742..d7b540f50ca9 100644 --- a/pkgs/development/python-modules/angr/default.nix +++ b/pkgs/development/python-modules/angr/default.nix @@ -43,14 +43,14 @@ in buildPythonPackage rec { pname = "angr"; - version = "9.0.10339"; + version = "9.0.10534"; disabled = pythonOlder "3.6"; src = fetchFromGitHub { owner = pname; repo = pname; rev = "v${version}"; - sha256 = "sha256-+bJuV4Ce3WoNtkZC+ism+QtRqTu42BDVVhqbZqVPAPA="; + sha256 = "sha256-A2dqCABkqkn/rjWGc8hrGs60BK+V8j2+jVAYxnEpx8Y="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/angrop/default.nix b/pkgs/development/python-modules/angrop/default.nix index 09f92bd3369e..35f98a172c7c 100644 --- a/pkgs/development/python-modules/angrop/default.nix +++ b/pkgs/development/python-modules/angrop/default.nix @@ -9,14 +9,14 @@ buildPythonPackage rec { pname = "angrop"; - version = "9.0.10339"; + version = "9.0.10534"; disabled = pythonOlder "3.6"; src = fetchFromGitHub { owner = "angr"; repo = pname; rev = "v${version}"; - sha256 = "sha256-YZ5pvn8ndtWnHd4QSpuyg8uenFm4K5dt6IgicSL/Ouw="; + sha256 = "sha256-PaAhEn/eJg1qfuq2sHWTGTiJKNfs60NJuvfS9hVObX4="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/ansible-runner/default.nix b/pkgs/development/python-modules/ansible-runner/default.nix index 9dc8eadb7775..a23f668529d1 100644 --- a/pkgs/development/python-modules/ansible-runner/default.nix +++ b/pkgs/development/python-modules/ansible-runner/default.nix @@ -8,20 +8,33 @@ , six , stdenv , ansible -, pytest , mock +, openssh +, pytest-mock +, pytest-timeout +, pytest-xdist +, pytestCheckHook }: buildPythonPackage rec { pname = "ansible-runner"; - version = "2.0.2"; + version = "2.0.3"; src = fetchPypi { inherit pname version; - sha256 = "c02b690803ec0be4453411c53743cd3fdca1dfc66dfa075794e14e717c5b61b3"; + sha256 = "15j0ljgw1rjxq4xiywxxxnxj4r6vwk8dwljkdsjmq3qmwgifcswg"; }; - checkInputs = [ pytest mock ]; + checkInputs = [ + ansible # required to place ansible CLI onto the PATH in tests + pytestCheckHook + pytest-mock + pytest-timeout + pytest-xdist + mock + openssh + ]; + propagatedBuildInputs = [ ansible psutil @@ -31,14 +44,31 @@ buildPythonPackage rec { six ]; - # test_process_isolation_settings is currently broken on Darwin Catalina - # https://github.com/ansible/ansible-runner/issues/413 - checkPhase = '' - HOME=$TMPDIR pytest \ - --ignore test/unit/test_runner.py \ - -k "not prepare ${lib.optionalString stdenv.isDarwin "and not process_isolation_settings"}" + preCheck = '' + export HOME=$(mktemp -d) ''; + disabledTests = [ + "test_callback_plugin_task_args_leak" # requires internet + "test_env_accuracy" + "test_large_stdout_blob" # times out on slower hardware + ] + # test_process_isolation_settings is currently broken on Darwin Catalina + # https://github.com/ansible/ansible-runner/issues/413 + ++ lib.optional stdenv.isDarwin "process_isolation_settings"; + + disabledTestPaths = [ + # these tests unset PATH and then run executables like `bash` (see https://github.com/ansible/ansible-runner/pull/918) + "test/integration/test_runner.py" + "test/unit/test_runner.py" + ] + ++ lib.optionals stdenv.isDarwin [ + # integration tests on Darwin are not regularly passing in ansible-runner's own CI + "test/integration" + # these tests write to `/tmp` which is not writable on Darwin + "test/unit/config/test__base.py" + ]; + meta = with lib; { description = "Helps when interfacing with Ansible"; homepage = "https://github.com/ansible/ansible-runner"; diff --git a/pkgs/development/python-modules/ansible/collections.nix b/pkgs/development/python-modules/ansible/collections.nix index 0c58defb583f..427e76a979cb 100644 --- a/pkgs/development/python-modules/ansible/collections.nix +++ b/pkgs/development/python-modules/ansible/collections.nix @@ -1,7 +1,6 @@ { lib , buildPythonPackage , fetchPypi -, ansible-base , jsonschema , jxmlease , ncclient diff --git a/pkgs/development/python-modules/ansible/core.nix b/pkgs/development/python-modules/ansible/core.nix index 574af6d37957..904a94717a97 100644 --- a/pkgs/development/python-modules/ansible/core.nix +++ b/pkgs/development/python-modules/ansible/core.nix @@ -23,17 +23,17 @@ let ansible-collections = callPackage ./collections.nix { - version = "4.7.0"; - sha256 = "0aab9id6dqfw2111r731c7y1p77dpzczynmgl4d989p3a7n54z0b"; + version = "4.8.0"; + sha256 = "0dlfmvh7jqna6rig39wrnxhklc3k5a3ky3bfq73dqbmcr5hzli8k"; }; in buildPythonPackage rec { pname = "ansible-core"; - version = "2.11.6"; + version = "2.12.0"; src = fetchPypi { inherit pname version; - sha256 = "sha256-k9UCg8fFtHbev4PcCJs/Z5uTmouae11ijSjar7s9MDo="; + sha256 = "sha256-DpBJoauLjFTdyAc43AqytXhwvm/kzU5VhdRxVHq3SxM="; }; # ansible_connection is already wrapped, so don't pass it through diff --git a/pkgs/development/python-modules/anybadge/default.nix b/pkgs/development/python-modules/anybadge/default.nix index a8aaec9f45b2..bc776e42f07b 100644 --- a/pkgs/development/python-modules/anybadge/default.nix +++ b/pkgs/development/python-modules/anybadge/default.nix @@ -1,27 +1,36 @@ -{ lib, fetchFromGitHub, buildPythonPackage, pytestCheckHook }: +{ lib +, fetchFromGitHub +, buildPythonPackage +, pytestCheckHook +}: buildPythonPackage rec { pname = "anybadge"; - version = "1.7.0"; + version = "1.8.0"; + format = "setuptools"; src = fetchFromGitHub { owner = "jongracecox"; repo = pname; rev = "v${version}"; - sha256 = "1d02fnig04zlrhfqqcf4505vy4p51whl2ifilnx3mkhis9lcwrmr"; + sha256 = "sha256-xKHIoV/8qsNMcU5fd92Jjh7d7jTeYN5xakMEjR6qPX8="; }; # setup.py reads its version from the TRAVIS_TAG environment variable TRAVIS_TAG = "v${version}"; - pythonImportsCheck = [ "anybadge" ]; + checkInputs = [ + pytestCheckHook + ]; - checkInputs = [ pytestCheckHook ]; + pythonImportsCheck = [ + "anybadge" + ]; meta = with lib; { - description = "A Python project for generating badges for your projects, with a focus on simplicity and flexibility"; - license = licenses.mit; + description = "Python tool for generating badges for your projects"; homepage = "https://github.com/jongracecox/anybadge"; - maintainers = [ maintainers.fabiangd ]; + license = licenses.mit; + maintainers = with maintainers; [ fabiangd ]; }; } diff --git a/pkgs/development/python-modules/anyio/default.nix b/pkgs/development/python-modules/anyio/default.nix index f043936f7d72..8565f7d7dd5d 100644 --- a/pkgs/development/python-modules/anyio/default.nix +++ b/pkgs/development/python-modules/anyio/default.nix @@ -19,7 +19,7 @@ buildPythonPackage rec { pname = "anyio"; - version = "3.3.1"; + version = "3.3.2"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -27,7 +27,7 @@ buildPythonPackage rec { owner = "agronholm"; repo = pname; rev = version; - sha256 = "sha256-JQf+OWHV2Vok5FmP7mlzeqbKUlxB+FC1c3ruX2aQEEs="; + sha256 = "sha256-XBIrFb/XDneaOf/TeHxyeEfyQ7qQcWO7LJF0k1f4Ark="; }; preBuild = '' diff --git a/pkgs/development/python-modules/approvaltests/default.nix b/pkgs/development/python-modules/approvaltests/default.nix index 6f2c55d45cb6..35e6c90f216d 100644 --- a/pkgs/development/python-modules/approvaltests/default.nix +++ b/pkgs/development/python-modules/approvaltests/default.nix @@ -1,4 +1,4 @@ -{ lib, buildPythonPackage, fetchFromGitHub, isPy37, pyperclip }: +{ lib, buildPythonPackage, fetchFromGitHub, pyperclip }: buildPythonPackage rec { version = "0.2.6"; diff --git a/pkgs/development/python-modules/apsw/default.nix b/pkgs/development/python-modules/apsw/default.nix index 8933d4e91bcc..c0f7274a80dd 100644 --- a/pkgs/development/python-modules/apsw/default.nix +++ b/pkgs/development/python-modules/apsw/default.nix @@ -1,5 +1,4 @@ -{ lib, buildPythonPackage, fetchFromGitHub, fetchpatch -, sqlite, isPyPy }: +{ lib, buildPythonPackage, fetchFromGitHub, sqlite, isPyPy }: buildPythonPackage rec { pname = "apsw"; diff --git a/pkgs/development/python-modules/archinfo/default.nix b/pkgs/development/python-modules/archinfo/default.nix index 968399df4336..ba23fc83b539 100644 --- a/pkgs/development/python-modules/archinfo/default.nix +++ b/pkgs/development/python-modules/archinfo/default.nix @@ -7,13 +7,13 @@ buildPythonPackage rec { pname = "archinfo"; - version = "9.0.10339"; + version = "9.0.10534"; src = fetchFromGitHub { owner = "angr"; repo = pname; rev = "v${version}"; - sha256 = "sha256-gVK3l2j64Sr67P81eUBYV/p77lwdIea5LNnteoDbwA0="; + sha256 = "sha256-8bGDl3rHVT2JKEOfYPHzFTxJ7t3Yz7aLQMVKAUNCSBo="; }; checkInputs = [ diff --git a/pkgs/development/python-modules/arrayqueues/default.nix b/pkgs/development/python-modules/arrayqueues/default.nix index 79a44ad42cdd..fa4b7d0bffdf 100644 --- a/pkgs/development/python-modules/arrayqueues/default.nix +++ b/pkgs/development/python-modules/arrayqueues/default.nix @@ -1,4 +1,4 @@ -{ lib, pkgs, buildPythonPackage, fetchPypi, isPy3k +{ lib, buildPythonPackage, fetchPypi, isPy3k , numpy }: diff --git a/pkgs/development/python-modules/arrow/2.nix b/pkgs/development/python-modules/arrow/2.nix index 88864ec78b77..cc702a525f95 100644 --- a/pkgs/development/python-modules/arrow/2.nix +++ b/pkgs/development/python-modules/arrow/2.nix @@ -1,5 +1,5 @@ { lib, buildPythonPackage, fetchPypi, isPy27 -, nose, chai, simplejson, backports_functools_lru_cache +, simplejson, backports_functools_lru_cache , python-dateutil, pytz, pytest-mock, sphinx, dateparser, pytest-cov , pytestCheckHook }: diff --git a/pkgs/development/python-modules/astor/default.nix b/pkgs/development/python-modules/astor/default.nix index 0d7aa3877125..ab68c91d5d6b 100644 --- a/pkgs/development/python-modules/astor/default.nix +++ b/pkgs/development/python-modules/astor/default.nix @@ -1,4 +1,4 @@ -{ lib, buildPythonPackage, fetchPypi, isPy27, pytestCheckHook, fetchpatch }: +{ lib, buildPythonPackage, fetchPypi, pytestCheckHook }: buildPythonPackage rec { pname = "astor"; diff --git a/pkgs/development/python-modules/astropy/default.nix b/pkgs/development/python-modules/astropy/default.nix index 06cfafc134f3..889c69d5313b 100644 --- a/pkgs/development/python-modules/astropy/default.nix +++ b/pkgs/development/python-modules/astropy/default.nix @@ -15,14 +15,14 @@ buildPythonPackage rec { pname = "astropy"; - version = "4.2"; + version = "4.3.1"; format = "pyproject"; disabled = !isPy3k; # according to setup.py src = fetchPypi { inherit pname version; - sha256 = "2c194f8a429b8399de64a413a06881ea49f0525cabaa2d78fc132b9e970adc6a"; + sha256 = "sha256-LTlRIjtOt/No/K2Mg0DSc3TF2OO2NaY2J1rNs481zVE="; }; nativeBuildInputs = [ setuptools-scm astropy-helpers astropy-extension-helpers cython jinja2 ]; diff --git a/pkgs/development/python-modules/async-upnp-client/default.nix b/pkgs/development/python-modules/async-upnp-client/default.nix index 709a1c624593..3b7634b181e4 100644 --- a/pkgs/development/python-modules/async-upnp-client/default.nix +++ b/pkgs/development/python-modules/async-upnp-client/default.nix @@ -14,14 +14,14 @@ buildPythonPackage rec { pname = "async-upnp-client"; - version = "0.22.10"; + version = "0.22.12"; disabled = pythonOlder "3.6"; src = fetchFromGitHub { owner = "StevenLooman"; repo = "async_upnp_client"; rev = version; - sha256 = "sha256-aWxZP/QsjA6kcSWW6vHpEcX2drV+gTvDQItl7IT7wxY="; + sha256 = "sha256-fp7I0G6gljkTZ2slQJ8R9AJ9VKQOQi2cLiZ63seUajs="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/async_stagger/default.nix b/pkgs/development/python-modules/async_stagger/default.nix index bb57a7f1ecf3..638e326e0da4 100644 --- a/pkgs/development/python-modules/async_stagger/default.nix +++ b/pkgs/development/python-modules/async_stagger/default.nix @@ -1,7 +1,6 @@ { lib , buildPythonPackage , fetchPypi -, fetchpatch , pythonOlder , pytestCheckHook , pytest-asyncio diff --git a/pkgs/development/python-modules/asyncio_mqtt/default.nix b/pkgs/development/python-modules/asyncio_mqtt/default.nix index d8a378b082fc..fd8a52f5a6ae 100644 --- a/pkgs/development/python-modules/asyncio_mqtt/default.nix +++ b/pkgs/development/python-modules/asyncio_mqtt/default.nix @@ -4,21 +4,24 @@ , fetchPypi , async_generator , paho-mqtt -, pytestCheckHook }: buildPythonPackage rec { - pname = "asyncio_mqtt"; - version = "0.10.0"; + pname = "asyncio-mqtt"; + version = "0.11.0"; + format = "setuptools"; src = fetchPypi { - inherit pname version; - sha256 = "0s94dvgh1fazycppki5m6f9d60hc4ykhqfznlzpwl4dzknxplpsz"; + pname = "asyncio_mqtt"; + inherit version; + sha256 = "sha256-uJown3bNA+pLJlorJcCjpMMFosX94gt/2tLAjIkuXLA="; }; propagatedBuildInputs = [ paho-mqtt - ] ++ lib.optional (pythonOlder "3.7") async_generator; + ] ++ lib.optional (pythonOlder "3.7") [ + async_generator + ]; doCheck = false; # no tests diff --git a/pkgs/development/python-modules/asyncssh/default.nix b/pkgs/development/python-modules/asyncssh/default.nix index 8cf73ba5df64..f028fc33310c 100644 --- a/pkgs/development/python-modules/asyncssh/default.nix +++ b/pkgs/development/python-modules/asyncssh/default.nix @@ -18,12 +18,14 @@ buildPythonPackage rec { pname = "asyncssh"; - version = "2.7.2"; + version = "2.8.0"; + format = "setuptools"; + disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "96b09239c3cc134cfb66ae1138313fdb48cc390806f21f831dd44f8a1d8252a1"; + sha256 = "sha256-VWXLBpShTp1MvJ9zhP58P9ZplVMetPUucq2II+2iG6M="; }; propagatedBuildInputs = [ @@ -62,9 +64,13 @@ buildPythonPackage rec { disabledTests = [ # No PIN set "TestSKAuthCTAP2" + # Requires network access + "test_connect_timeout_exceeded" ]; - pythonImportsCheck = [ "asyncssh" ]; + pythonImportsCheck = [ + "asyncssh" + ]; meta = with lib; { description = "Asynchronous SSHv2 Python client and server library"; diff --git a/pkgs/development/python-modules/atpublic/default.nix b/pkgs/development/python-modules/atpublic/default.nix index 4d96bcbe26b5..8bf81556770a 100644 --- a/pkgs/development/python-modules/atpublic/default.nix +++ b/pkgs/development/python-modules/atpublic/default.nix @@ -1,6 +1,8 @@ -{ lib, isPy3k, pythonOlder, fetchPypi, buildPythonPackage -, pytest -, pytest-cov +{ lib +, buildPythonPackage +, fetchPypi +, pytestCheckHook +, pythonOlder , sybil , typing-extensions }: @@ -8,7 +10,9 @@ buildPythonPackage rec { pname = "atpublic"; version = "2.3"; - disabled = !isPy3k; + format = "setuptools"; + + disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; @@ -20,25 +24,25 @@ buildPythonPackage rec { ]; checkInputs = [ - pytest pytest-cov sybil + pytestCheckHook + sybil ]; - checkPhase = '' - pytest + postPatch = '' + substituteInPlace setup.cfg \ + --replace "--cov=public" "" ''; + pythonImportsCheck = [ + "public" + ]; + meta = with lib; { - homepage = "https://public.readthedocs.io/en/latest/"; - description = "A decorator and function which populates a module's __all__ and globals"; + description = "Python decorator and function which populates a module's __all__ and globals"; + homepage = "https://public.readthedocs.io/"; longDescription = '' This is a very simple decorator and function which populates a module's __all__ and optionally the module globals. - - This provides both a pure-Python implementation and a C implementation. It is - proposed that the C implementation be added to builtins_ for Python 3.6. - - This proposal seems to have been rejected, for more information see - https://bugs.python.org/issue26632. ''; license = licenses.asl20; maintainers = with maintainers; [ eadwu ]; diff --git a/pkgs/development/python-modules/authheaders/default.nix b/pkgs/development/python-modules/authheaders/default.nix index a1d049ebb151..8593f7f4d742 100644 --- a/pkgs/development/python-modules/authheaders/default.nix +++ b/pkgs/development/python-modules/authheaders/default.nix @@ -4,11 +4,11 @@ buildPythonPackage rec { pname = "authheaders"; - version = "0.13.0"; + version = "0.14.1"; src = fetchPypi { inherit pname version; - sha256 = "935726b784cc636cbcfed2c977f1a6887dc60056806da4eff60db932c5896692"; + sha256 = "4e601b5b54080019a2f548fadf80ddf9c5538615607c7fb602936404aafe67e2"; }; propagatedBuildInputs = [ authres dnspython dkimpy publicsuffix2 ] diff --git a/pkgs/development/python-modules/autobahn/default.nix b/pkgs/development/python-modules/autobahn/default.nix index 52def3d6ee17..d51862dd1db4 100644 --- a/pkgs/development/python-modules/autobahn/default.nix +++ b/pkgs/development/python-modules/autobahn/default.nix @@ -1,6 +1,5 @@ { lib , argon2_cffi -, attrs , buildPythonPackage , cbor , cbor2 diff --git a/pkgs/development/python-modules/awesomeversion/default.nix b/pkgs/development/python-modules/awesomeversion/default.nix index b5b59ef65508..b57a26060fd6 100644 --- a/pkgs/development/python-modules/awesomeversion/default.nix +++ b/pkgs/development/python-modules/awesomeversion/default.nix @@ -8,14 +8,14 @@ buildPythonPackage rec { pname = "awesomeversion"; - version = "21.8.1"; + version = "21.10.1"; disabled = pythonOlder "3.8"; src = fetchFromGitHub { owner = "ludeeus"; repo = pname; rev = version; - sha256 = "sha256-eyo0dzmExJ7WCRAXFvB+ElWi5HTTzJ7XJsmxB2t6yfI="; + sha256 = "sha256-y+QU8T1Cb6FpRcRqhao4KPdE9XlU5C+GURaEuahC25E="; }; postPatch = '' diff --git a/pkgs/development/python-modules/aws-lambda-builders/default.nix b/pkgs/development/python-modules/aws-lambda-builders/default.nix index b93ba47c72a4..a99be4038b38 100644 --- a/pkgs/development/python-modules/aws-lambda-builders/default.nix +++ b/pkgs/development/python-modules/aws-lambda-builders/default.nix @@ -12,14 +12,14 @@ buildPythonPackage rec { pname = "aws-lambda-builders"; - version = "1.8.1"; + version = "1.9.0"; # No tests available in PyPI tarball src = fetchFromGitHub { owner = "awslabs"; repo = "aws-lambda-builders"; rev = "v${version}"; - sha256 = "1avq04hmps2cd33dd5n4bc3lclqg0hv6khn804fbv0hmy7lywp8b"; + sha256 = "1ff1hr282snpjs5ggf7agxk5y6nr4xjdahmzq6hv56gj4lcfsq7c"; }; # Package is not compatible with Python 3.5 diff --git a/pkgs/development/python-modules/aws-sam-translator/default.nix b/pkgs/development/python-modules/aws-sam-translator/default.nix index 9807c6581c55..d8c1419b0c53 100644 --- a/pkgs/development/python-modules/aws-sam-translator/default.nix +++ b/pkgs/development/python-modules/aws-sam-translator/default.nix @@ -14,13 +14,13 @@ buildPythonPackage rec { pname = "aws-sam-translator"; - version = "1.39.0"; + version = "1.40.0"; src = fetchFromGitHub { owner = "aws"; repo = "serverless-application-model"; rev = "v${version}"; - sha256 = "1a9m7zyqc414adw1i0sr2n9nlnmry0gi1ah1qna3yv9dx4ql9v9c"; + sha256 = "sha256-jVJVoS7rc1RebBvihzmv6LvufMf/VvXOwj0TYkXBdmo="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/awscrt/default.nix b/pkgs/development/python-modules/awscrt/default.nix index fbdd15522e6a..e3125343dffa 100644 --- a/pkgs/development/python-modules/awscrt/default.nix +++ b/pkgs/development/python-modules/awscrt/default.nix @@ -2,7 +2,7 @@ buildPythonPackage rec { pname = "awscrt"; - version = "0.12.5"; + version = "0.12.6"; buildInputs = lib.optionals stdenv.isDarwin [ CoreFoundation Security ]; @@ -22,7 +22,7 @@ buildPythonPackage rec { src = fetchPypi { inherit pname version; - sha256 = "8bb80b37ebfd01f6078c60bb3231118380ac06842de692f6e37b6f8643e15a1d"; + sha256 = "65d71b4cd78165bea962dfbda361b47b9b5a6198d8074046b8667da9653d0752"; }; meta = with lib; { diff --git a/pkgs/development/python-modules/azure-appconfiguration/default.nix b/pkgs/development/python-modules/azure-appconfiguration/default.nix index 3dcff8076bc5..ee7f9fd44ff4 100644 --- a/pkgs/development/python-modules/azure-appconfiguration/default.nix +++ b/pkgs/development/python-modules/azure-appconfiguration/default.nix @@ -1,16 +1,15 @@ -{ lib, buildPythonPackage, fetchPypi, isPy27 -, azure-core +{ lib, buildPythonPackage, fetchPypi, azure-core , msrest }: buildPythonPackage rec { pname = "azure-appconfiguration"; - version = "1.2.0"; + version = "1.3.0"; src = fetchPypi { inherit pname version; extension = "zip"; - sha256 = "85c9c25612f160897ae212532ec7c19c94b0f4463f4830d0ee08cb2d296df407"; + sha256 = "9372467c74930d20827135d468b7fcaa1ad42e4673a4591ceadbb6ad8e1b7e07"; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/azure-cosmos/default.nix b/pkgs/development/python-modules/azure-cosmos/default.nix index 47e6fb6f0394..9cbbd8e64b06 100644 --- a/pkgs/development/python-modules/azure-cosmos/default.nix +++ b/pkgs/development/python-modules/azure-cosmos/default.nix @@ -1,6 +1,5 @@ { buildPythonPackage , lib -, python , fetchPypi , six , requests diff --git a/pkgs/development/python-modules/azure-identity/default.nix b/pkgs/development/python-modules/azure-identity/default.nix index 9136ed0a4eb8..2013bc645450 100644 --- a/pkgs/development/python-modules/azure-identity/default.nix +++ b/pkgs/development/python-modules/azure-identity/default.nix @@ -1,6 +1,5 @@ { buildPythonPackage , fetchPypi -, isPy38 , lib # pythonPackages @@ -17,12 +16,12 @@ buildPythonPackage rec { pname = "azure-identity"; - version = "1.7.0"; + version = "1.7.1"; src = fetchPypi { inherit pname version; extension = "zip"; - sha256 = "3faaecb645e3b2300648a4a452458ec0e31e13d9dc928e710992e43ef4694205"; + sha256 = "7f22cd0c7a9b92ed297dd67ae79d9bb9a866e404061c02cec709ad10c4c88e19"; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/azure-keyvault-certificates/default.nix b/pkgs/development/python-modules/azure-keyvault-certificates/default.nix index 52b1305998ec..f1a6c5359d6b 100644 --- a/pkgs/development/python-modules/azure-keyvault-certificates/default.nix +++ b/pkgs/development/python-modules/azure-keyvault-certificates/default.nix @@ -1,8 +1,6 @@ { lib , buildPythonPackage , fetchPypi -, python -, isPy3k , azure-common , azure-core , msrest diff --git a/pkgs/development/python-modules/azure-keyvault-keys/default.nix b/pkgs/development/python-modules/azure-keyvault-keys/default.nix index 27f97854dd37..59fcef4d4bf1 100644 --- a/pkgs/development/python-modules/azure-keyvault-keys/default.nix +++ b/pkgs/development/python-modules/azure-keyvault-keys/default.nix @@ -2,7 +2,6 @@ , aiohttp , azure-common , azure-core -, azure-nspkg , cryptography , msrest , pytestCheckHook diff --git a/pkgs/development/python-modules/azure-loganalytics/default.nix b/pkgs/development/python-modules/azure-loganalytics/default.nix index 1eed45d72f5a..ee3f0460fd7e 100644 --- a/pkgs/development/python-modules/azure-loganalytics/default.nix +++ b/pkgs/development/python-modules/azure-loganalytics/default.nix @@ -1,20 +1,18 @@ { lib , buildPythonPackage , fetchPypi -, python -, isPy3k , msrest , azure-common }: buildPythonPackage rec { - version = "0.1.0"; + version = "0.1.1"; pname = "azure-loganalytics"; src = fetchPypi { inherit pname version; extension = "zip"; - sha256 = "3ceb350def677a351f34b0a0d1637df6be0c6fe87ff32a5270b17f540f6da06e"; + sha256 = "68ffb9a2206e06b9672100a8e6351cc04f75bb81867f30d416c68b55d624d793"; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/azure-mgmt-authorization/default.nix b/pkgs/development/python-modules/azure-mgmt-authorization/default.nix index a622c6a94c90..0489cb112b8e 100644 --- a/pkgs/development/python-modules/azure-mgmt-authorization/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-authorization/default.nix @@ -11,12 +11,12 @@ buildPythonPackage rec { pname = "azure-mgmt-authorization"; - version = "1.0.0"; + version = "2.0.0"; src = fetchPypi { inherit pname version; extension = "zip"; - sha256 = "9a9fc16866b46387853381ab4fa0f84c1765e0afea5b0124709ea9fae10ee752"; + sha256 = "0776edc4980be940a8602eefc0372b4d1a1fa26caa46e3c0234e0c7a0feda4ec"; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/azure-mgmt-billing/default.nix b/pkgs/development/python-modules/azure-mgmt-billing/default.nix index 91ec3c069c8b..94b90e6b196d 100644 --- a/pkgs/development/python-modules/azure-mgmt-billing/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-billing/default.nix @@ -5,8 +5,6 @@ , azure-common , azure-mgmt-core , azure-mgmt-nspkg -, python -, isPy3k }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/azure-mgmt-commerce/default.nix b/pkgs/development/python-modules/azure-mgmt-commerce/default.nix index 32e6cebd1f59..89aed74bbb3d 100644 --- a/pkgs/development/python-modules/azure-mgmt-commerce/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-commerce/default.nix @@ -5,8 +5,6 @@ , azure-common , azure-mgmt-core , azure-mgmt-nspkg -, python -, isPy3k }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/azure-mgmt-consumption/default.nix b/pkgs/development/python-modules/azure-mgmt-consumption/default.nix index be22e14b574b..aa942d3a732b 100644 --- a/pkgs/development/python-modules/azure-mgmt-consumption/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-consumption/default.nix @@ -1,8 +1,6 @@ { lib , buildPythonPackage , fetchPypi -, python -, isPy3k , msrestazure , azure-common , azure-mgmt-core diff --git a/pkgs/development/python-modules/azure-mgmt-containerinstance/default.nix b/pkgs/development/python-modules/azure-mgmt-containerinstance/default.nix index 45158b8015d5..ae6d9755171e 100644 --- a/pkgs/development/python-modules/azure-mgmt-containerinstance/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-containerinstance/default.nix @@ -11,12 +11,12 @@ buildPythonPackage rec { pname = "azure-mgmt-containerinstance"; - version = "9.0.0"; + version = "9.1.0"; src = fetchPypi { inherit pname version; extension = "zip"; - sha256 = "041431c5a768ac652aac318a17f2a53b90db968494c79abbafec441d0be387ff"; + sha256 = "22164b0c59138b37bc48ba6d476bf635152bc428dcb420b521a14b8c25c797ad"; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/azure-mgmt-core/default.nix b/pkgs/development/python-modules/azure-mgmt-core/default.nix index fe64cabb2567..6adca4c02c7a 100644 --- a/pkgs/development/python-modules/azure-mgmt-core/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-core/default.nix @@ -1,9 +1,7 @@ { pkgs , buildPythonPackage , fetchPypi -, python , azure-core -, isPy3k }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/azure-mgmt-datalake-analytics/default.nix b/pkgs/development/python-modules/azure-mgmt-datalake-analytics/default.nix index 8fc8b44f3e6a..473ebda1b874 100644 --- a/pkgs/development/python-modules/azure-mgmt-datalake-analytics/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-datalake-analytics/default.nix @@ -1,8 +1,6 @@ { lib , buildPythonPackage , fetchPypi -, python -, isPy3k , msrestazure , azure-common , azure-mgmt-datalake-nspkg diff --git a/pkgs/development/python-modules/azure-mgmt-datalake-store/default.nix b/pkgs/development/python-modules/azure-mgmt-datalake-store/default.nix index fc5d8ba6f018..18665f4dbb6e 100644 --- a/pkgs/development/python-modules/azure-mgmt-datalake-store/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-datalake-store/default.nix @@ -1,9 +1,6 @@ { lib , buildPythonPackage , fetchPypi -, python -, isPy3k -, pythonNamespacesHook , msrestazure , azure-common , azure-mgmt-datalake-nspkg diff --git a/pkgs/development/python-modules/azure-mgmt-datamigration/default.nix b/pkgs/development/python-modules/azure-mgmt-datamigration/default.nix index 6fd6b4a2a7ff..66945c67c6a3 100644 --- a/pkgs/development/python-modules/azure-mgmt-datamigration/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-datamigration/default.nix @@ -1,7 +1,6 @@ { lib , buildPythonPackage , fetchPypi -, python , isPy3k , msrest , msrestazure diff --git a/pkgs/development/python-modules/azure-mgmt-devtestlabs/default.nix b/pkgs/development/python-modules/azure-mgmt-devtestlabs/default.nix index 820f737c5489..40ab2fbedcce 100644 --- a/pkgs/development/python-modules/azure-mgmt-devtestlabs/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-devtestlabs/default.nix @@ -1,7 +1,6 @@ { lib , buildPythonPackage , fetchPypi -, python , isPy3k , msrest , msrestazure diff --git a/pkgs/development/python-modules/azure-mgmt-dns/default.nix b/pkgs/development/python-modules/azure-mgmt-dns/default.nix index 7daca780853a..515a8ab6026a 100644 --- a/pkgs/development/python-modules/azure-mgmt-dns/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-dns/default.nix @@ -1,8 +1,6 @@ { lib , buildPythonPackage , fetchPypi -, python -, isPy3k , msrest , msrestazure , azure-common diff --git a/pkgs/development/python-modules/azure-mgmt-eventgrid/default.nix b/pkgs/development/python-modules/azure-mgmt-eventgrid/default.nix index c3ba311d4c49..2023eb0ab567 100644 --- a/pkgs/development/python-modules/azure-mgmt-eventgrid/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-eventgrid/default.nix @@ -11,12 +11,12 @@ buildPythonPackage rec { pname = "azure-mgmt-eventgrid"; - version = "9.0.0"; + version = "10.0.0"; src = fetchPypi { inherit pname version; extension = "zip"; - sha256 = "aecbb69ecb010126c03668ca7c9a2be8e965568f5b560f0e7b5bc152b157b510"; + sha256 = "582e314ca05a9be0cd391c64689e6a5332d5bbad76c2ea751b727cfe99a2a3d2"; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/azure-mgmt-iothubprovisioningservices/default.nix b/pkgs/development/python-modules/azure-mgmt-iothubprovisioningservices/default.nix index 36a797a0e834..39f09b28241c 100644 --- a/pkgs/development/python-modules/azure-mgmt-iothubprovisioningservices/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-iothubprovisioningservices/default.nix @@ -1,7 +1,6 @@ { lib , buildPythonPackage , fetchPypi -, python , msrest , msrestazure , azure-common diff --git a/pkgs/development/python-modules/azure-mgmt-keyvault/default.nix b/pkgs/development/python-modules/azure-mgmt-keyvault/default.nix index dfbaa40b1f1d..9de9ffd52743 100644 --- a/pkgs/development/python-modules/azure-mgmt-keyvault/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-keyvault/default.nix @@ -1,8 +1,6 @@ { lib , buildPythonPackage , fetchPypi -, python -, isPy3k , msrest , msrestazure , azure-common diff --git a/pkgs/development/python-modules/azure-mgmt-maps/default.nix b/pkgs/development/python-modules/azure-mgmt-maps/default.nix index 8a62fafaea13..d8be6d179383 100644 --- a/pkgs/development/python-modules/azure-mgmt-maps/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-maps/default.nix @@ -1,8 +1,6 @@ { lib , buildPythonPackage , fetchPypi -, python -, isPy3k , msrest , msrestazure , azure-common diff --git a/pkgs/development/python-modules/azure-mgmt-monitor/default.nix b/pkgs/development/python-modules/azure-mgmt-monitor/default.nix index db4aa3fb77cf..a7cac4b6df4b 100644 --- a/pkgs/development/python-modules/azure-mgmt-monitor/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-monitor/default.nix @@ -1,7 +1,6 @@ { lib , buildPythonPackage , fetchPypi -, python , isPy3k , msrest , msrestazure diff --git a/pkgs/development/python-modules/azure-mgmt-msi/default.nix b/pkgs/development/python-modules/azure-mgmt-msi/default.nix index 4bd0a493ddae..bf81b5e67c72 100644 --- a/pkgs/development/python-modules/azure-mgmt-msi/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-msi/default.nix @@ -1,8 +1,6 @@ { lib , buildPythonPackage , fetchPypi -, python -, isPy3k , msrest , msrestazure , azure-common diff --git a/pkgs/development/python-modules/azure-mgmt-network/default.nix b/pkgs/development/python-modules/azure-mgmt-network/default.nix index 20d3db5669a3..a8958eef2083 100644 --- a/pkgs/development/python-modules/azure-mgmt-network/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-network/default.nix @@ -2,7 +2,6 @@ , buildPythonPackage , fetchPypi , azure-common -, azure-mgmt-common , azure-mgmt-core , msrest , msrestazure @@ -10,14 +9,14 @@ }: buildPythonPackage rec { - version = "19.1.0"; + version = "19.2.0"; pname = "azure-mgmt-network"; disabled = !isPy3k; src = fetchPypi { inherit pname version; extension = "zip"; - sha256 = "62ef7fe8ba98e56412b434c9c35dc755b3c5e469f2c01bbed2ce0d12973a044b"; + sha256 = "c8da1cf9523b89d4b268546ea087153372633962e31a4e6befae20d0ae308bac"; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/azure-mgmt-nspkg/default.nix b/pkgs/development/python-modules/azure-mgmt-nspkg/default.nix index b3503e23d613..4a01c753a626 100644 --- a/pkgs/development/python-modules/azure-mgmt-nspkg/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-nspkg/default.nix @@ -2,8 +2,6 @@ , buildPythonPackage , fetchPypi , azure-nspkg -, python -, isPy3k }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/azure-mgmt-recoveryservicesbackup/default.nix b/pkgs/development/python-modules/azure-mgmt-recoveryservicesbackup/default.nix index 3ebc199599bd..67343337868a 100644 --- a/pkgs/development/python-modules/azure-mgmt-recoveryservicesbackup/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-recoveryservicesbackup/default.nix @@ -10,12 +10,12 @@ buildPythonPackage rec { pname = "azure-mgmt-recoveryservicesbackup"; - version = "2.0.0"; + version = "3.0.0"; src = fetchPypi { inherit pname version; extension = "zip"; - sha256 = "d3e60daefbc20a7fa381c7ad1498f4bf4bb5a1414c1c64188cc9d5c98c4e12ac"; + sha256 = "1992486b28ddd6d4f597fd3004217cd2caf4f4dc8a0ce71226b5ae767ace3a18"; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/azure-mgmt-redhatopenshift/default.nix b/pkgs/development/python-modules/azure-mgmt-redhatopenshift/default.nix index 1ba00e861735..f2f4587cc67e 100644 --- a/pkgs/development/python-modules/azure-mgmt-redhatopenshift/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-redhatopenshift/default.nix @@ -1,7 +1,6 @@ { lib , buildPythonPackage , fetchPypi -, python , msrest , msrestazure , azure-common diff --git a/pkgs/development/python-modules/azure-mgmt-relay/default.nix b/pkgs/development/python-modules/azure-mgmt-relay/default.nix index 71cdfe6e4c6f..a44825b55bd6 100644 --- a/pkgs/development/python-modules/azure-mgmt-relay/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-relay/default.nix @@ -1,8 +1,6 @@ { lib , buildPythonPackage , fetchPypi -, python -, isPy3k , msrestazure , azure-common , azure-mgmt-core diff --git a/pkgs/development/python-modules/azure-mgmt-servicefabric/default.nix b/pkgs/development/python-modules/azure-mgmt-servicefabric/default.nix index 42cd78d285c2..c7ae3b1acb5e 100644 --- a/pkgs/development/python-modules/azure-mgmt-servicefabric/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-servicefabric/default.nix @@ -1,8 +1,6 @@ { lib , buildPythonPackage , fetchPypi -, python -, isPy3k , msrest , msrestazure , azure-common diff --git a/pkgs/development/python-modules/azure-mgmt-servicefabricmanagedclusters/default.nix b/pkgs/development/python-modules/azure-mgmt-servicefabricmanagedclusters/default.nix index b79c73ab026c..55739e868e76 100644 --- a/pkgs/development/python-modules/azure-mgmt-servicefabricmanagedclusters/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-servicefabricmanagedclusters/default.nix @@ -1,8 +1,6 @@ { lib , buildPythonPackage , fetchPypi -, python -, isPy3k , msrest , msrestazure , azure-common diff --git a/pkgs/development/python-modules/azure-mgmt-storage/default.nix b/pkgs/development/python-modules/azure-mgmt-storage/default.nix index 3c47f7f0dad2..ed5b19bd80d6 100644 --- a/pkgs/development/python-modules/azure-mgmt-storage/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-storage/default.nix @@ -1,7 +1,6 @@ { lib , buildPythonPackage , fetchPypi -, python , azure-mgmt-common , azure-mgmt-core , isPy3k diff --git a/pkgs/development/python-modules/azure-nspkg/default.nix b/pkgs/development/python-modules/azure-nspkg/default.nix index 25636053a6b3..f9c8e8d68c64 100644 --- a/pkgs/development/python-modules/azure-nspkg/default.nix +++ b/pkgs/development/python-modules/azure-nspkg/default.nix @@ -1,8 +1,6 @@ { lib , buildPythonPackage , fetchPypi -, python -, isPy3k }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/azure-storage-file-share/default.nix b/pkgs/development/python-modules/azure-storage-file-share/default.nix index b6c639b6246b..421b46a9948f 100644 --- a/pkgs/development/python-modules/azure-storage-file-share/default.nix +++ b/pkgs/development/python-modules/azure-storage-file-share/default.nix @@ -7,7 +7,6 @@ , azure-core , cryptography , msrest -, futures ? null }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/azure-storage/default.nix b/pkgs/development/python-modules/azure-storage/default.nix index 3bc6a7318665..af6652733bd5 100644 --- a/pkgs/development/python-modules/azure-storage/default.nix +++ b/pkgs/development/python-modules/azure-storage/default.nix @@ -1,7 +1,6 @@ { pkgs , buildPythonPackage , fetchPypi -, python , azure-common , cryptography , futures ? null diff --git a/pkgs/development/python-modules/bacpypes/default.nix b/pkgs/development/python-modules/bacpypes/default.nix index 8a1e6771b114..40d06f7da8a0 100644 --- a/pkgs/development/python-modules/bacpypes/default.nix +++ b/pkgs/development/python-modules/bacpypes/default.nix @@ -1,4 +1,4 @@ -{ lib, buildPythonPackage, fetchPypi, fetchFromGitHub +{ lib, buildPythonPackage, fetchFromGitHub , wheel, pytestCheckHook, pytest-runner, pythonAtLeast }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/bagit/default.nix b/pkgs/development/python-modules/bagit/default.nix index 7663cf8cf1a9..67aed7c186fd 100644 --- a/pkgs/development/python-modules/bagit/default.nix +++ b/pkgs/development/python-modules/bagit/default.nix @@ -1,7 +1,6 @@ { lib , buildPythonPackage , fetchFromGitHub -, coverage , gettext , mock , pytestCheckHook diff --git a/pkgs/development/python-modules/bayesian-optimization/default.nix b/pkgs/development/python-modules/bayesian-optimization/default.nix index 1e896d82678a..6230c9985968 100644 --- a/pkgs/development/python-modules/bayesian-optimization/default.nix +++ b/pkgs/development/python-modules/bayesian-optimization/default.nix @@ -1,7 +1,6 @@ { lib , buildPythonPackage , fetchFromGitHub -, python , scikit-learn , scipy , pytest diff --git a/pkgs/development/python-modules/bimmer-connected/default.nix b/pkgs/development/python-modules/bimmer-connected/default.nix index 472e6a470779..337d6951faf3 100644 --- a/pkgs/development/python-modules/bimmer-connected/default.nix +++ b/pkgs/development/python-modules/bimmer-connected/default.nix @@ -9,7 +9,8 @@ buildPythonPackage rec { pname = "bimmer-connected"; - version = "0.7.21"; + version = "0.7.22"; + format = "setuptools"; disabled = pythonOlder "3.5"; @@ -17,7 +18,7 @@ buildPythonPackage rec { owner = "bimmerconnected"; repo = "bimmer_connected"; rev = version; - sha256 = "sha256-98K7FRB//WyCu6NPG0x4ViA8UdMuiANDXshLjx/Yehg="; + sha256 = "sha256-tAkgOZvf9nyrAfFRxGkp7O/2oIAdBx+hNZbK9den+5c="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/bleak/default.nix b/pkgs/development/python-modules/bleak/default.nix index d035e4133518..d159811efbcc 100644 --- a/pkgs/development/python-modules/bleak/default.nix +++ b/pkgs/development/python-modules/bleak/default.nix @@ -4,20 +4,18 @@ buildPythonPackage rec { pname = "bleak"; - version = "0.12.1"; + version = "0.13.0"; disabled = !isPy3k; src = fetchPypi { inherit pname version; - sha256 = "1va9138igcgbpsnzgr90qwprmhr9h8lryqslc22jxra4r56a502a"; + sha256 = "1vnwk36qfws9amqrdaynf63dcj2gzxm0ns1l75hrczmd5j2ic1zb"; }; postPatch = '' - # bleak checks BlueZ's version with a call to `bluetoothctl -v` twice - substituteInPlace bleak/__init__.py \ - --replace \"bluetoothctl\" \"${bluez}/bin/bluetoothctl\" - substituteInPlace bleak/backends/bluezdbus/client.py \ + # bleak checks BlueZ's version with a call to `bluetoothctl --version` + substituteInPlace bleak/backends/bluezdbus/__init__.py \ --replace \"bluetoothctl\" \"${bluez}/bin/bluetoothctl\" ''; diff --git a/pkgs/development/python-modules/blebox-uniapi/default.nix b/pkgs/development/python-modules/blebox-uniapi/default.nix index c3dbe3ccd321..6d7c79bf6a0a 100644 --- a/pkgs/development/python-modules/blebox-uniapi/default.nix +++ b/pkgs/development/python-modules/blebox-uniapi/default.nix @@ -1,6 +1,5 @@ { lib , buildPythonPackage -, pythonOlder , fetchFromGitHub , aiohttp , semver diff --git a/pkgs/development/python-modules/blessed/default.nix b/pkgs/development/python-modules/blessed/default.nix index 981b5c85f96e..c2b03d35a21c 100644 --- a/pkgs/development/python-modules/blessed/default.nix +++ b/pkgs/development/python-modules/blessed/default.nix @@ -1,4 +1,4 @@ -{ lib, buildPythonPackage, fetchPypi, fetchpatch, six +{ lib, buildPythonPackage, fetchPypi, six , wcwidth, pytest, mock, glibcLocales }: diff --git a/pkgs/development/python-modules/blinkpy/default.nix b/pkgs/development/python-modules/blinkpy/default.nix index a73514805249..c427886a0324 100644 --- a/pkgs/development/python-modules/blinkpy/default.nix +++ b/pkgs/development/python-modules/blinkpy/default.nix @@ -1,6 +1,5 @@ { lib , buildPythonPackage -, pythonOlder , fetchFromGitHub , python-dateutil , python-slugify diff --git a/pkgs/development/python-modules/bokeh/default.nix b/pkgs/development/python-modules/bokeh/default.nix index 925eb9c8f39d..63cd373abf77 100644 --- a/pkgs/development/python-modules/bokeh/default.nix +++ b/pkgs/development/python-modules/bokeh/default.nix @@ -12,7 +12,6 @@ , pillow #, pytestCheckHook# , pytest -, python , python-dateutil , pyyaml , selenium diff --git a/pkgs/development/python-modules/boost-histogram/default.nix b/pkgs/development/python-modules/boost-histogram/default.nix index d66b80d00c71..f428dc788bf9 100644 --- a/pkgs/development/python-modules/boost-histogram/default.nix +++ b/pkgs/development/python-modules/boost-histogram/default.nix @@ -2,13 +2,13 @@ buildPythonPackage rec { pname = "boost-histogram"; - version = "1.1.0"; + version = "1.2.1"; disabled = !isPy3k; src = fetchPypi { pname = "boost_histogram"; inherit version; - sha256 = "370e8e44a0bac4ebbedb7e62570be3a75a7a3807a297d6e82a94301b4681fc22"; + sha256 = "a27842b2f1cfecc509382da2b25b03056354696482b38ec3c0220af0fc9b7579"; }; buildInputs = [ boost ]; diff --git a/pkgs/development/python-modules/bootstrapped-pip/2.nix b/pkgs/development/python-modules/bootstrapped-pip/2.nix index f89d39ae2b79..2fc8b8b8d4b7 100644 --- a/pkgs/development/python-modules/bootstrapped-pip/2.nix +++ b/pkgs/development/python-modules/bootstrapped-pip/2.nix @@ -1,8 +1,7 @@ -{ lib, stdenv, python, fetchPypi, makeWrapper, unzip, makeSetupHook +{ lib, stdenv, python, makeWrapper, unzip , pipInstallHook , setuptoolsBuildHook , wheel, pip, setuptools -, isPy27 }: stdenv.mkDerivation rec { diff --git a/pkgs/development/python-modules/bootstrapped-pip/default.nix b/pkgs/development/python-modules/bootstrapped-pip/default.nix index 84016043929c..b2846e3a13a1 100644 --- a/pkgs/development/python-modules/bootstrapped-pip/default.nix +++ b/pkgs/development/python-modules/bootstrapped-pip/default.nix @@ -1,8 +1,7 @@ -{ lib, stdenv, python, fetchPypi, makeWrapper, unzip, makeSetupHook +{ lib, stdenv, python, makeWrapper, unzip , pipInstallHook , setuptoolsBuildHook , wheel, pip, setuptools -, isPy27 }: stdenv.mkDerivation rec { diff --git a/pkgs/development/python-modules/bsdiff4/default.nix b/pkgs/development/python-modules/bsdiff4/default.nix index 5687e9c7bf7a..cbc75ef2843f 100644 --- a/pkgs/development/python-modules/bsdiff4/default.nix +++ b/pkgs/development/python-modules/bsdiff4/default.nix @@ -1,7 +1,6 @@ { lib , buildPythonPackage , fetchPypi -, aflplusplus }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/build/default.nix b/pkgs/development/python-modules/build/default.nix index 9b02160dc4e0..70693133b52f 100644 --- a/pkgs/development/python-modules/build/default.nix +++ b/pkgs/development/python-modules/build/default.nix @@ -1,4 +1,5 @@ { lib +, stdenv , buildPythonPackage , fetchFromGitHub , filelock @@ -56,6 +57,9 @@ buildPythonPackage rec { "test_default_pip_is_never_too_old" "test_build" "test_init" + ] ++ lib.optionals stdenv.isDarwin [ + # expects Apple's python and its quirks + "test_can_get_venv_paths_with_conflicting_default_scheme" ]; pythonImportsCheck = [ "build" ]; diff --git a/pkgs/development/python-modules/cachecontrol/default.nix b/pkgs/development/python-modules/cachecontrol/default.nix index ba9b9022ac80..d074183e79d7 100644 --- a/pkgs/development/python-modules/cachecontrol/default.nix +++ b/pkgs/development/python-modules/cachecontrol/default.nix @@ -1,34 +1,49 @@ { lib , buildPythonPackage -, fetchPypi -, requests +, cherrypy +, fetchFromGitHub +, lockfile +, mock , msgpack -, pytest +, pytestCheckHook +, pythonOlder +, requests }: buildPythonPackage rec { - version = "0.12.6"; - pname = "CacheControl"; + pname = "cachecontrol"; + version = "0.12.10"; + format = "setuptools"; - src = fetchPypi { - inherit pname version; - sha256 = "be9aa45477a134aee56c8fac518627e1154df063e85f67d4f83ce0ccc23688e8"; + disabled = pythonOlder "3.6"; + + src = fetchFromGitHub { + owner = "ionrock"; + repo = pname; + rev = "v${version}"; + sha256 = "sha256-mgvL0q10UbPHY1H3tJprke5p8qNl3HNYoeLAERZTcTs="; }; - checkInputs = [ pytest ]; - propagatedBuildInputs = [ requests msgpack ]; + propagatedBuildInputs = [ + msgpack + requests + ]; - # tests not included with pypi release - doCheck = false; + checkInputs = [ + cherrypy + mock + lockfile + pytestCheckHook + ]; - checkPhase = '' - pytest tests - ''; + pythonImportsCheck = [ + "cachecontrol" + ]; meta = with lib; { - homepage = "https://github.com/ionrock/cachecontrol"; description = "Httplib2 caching for requests"; + homepage = "https://github.com/ionrock/cachecontrol"; license = licenses.asl20; - maintainers = [ maintainers.costrouc ]; + maintainers = with maintainers; [ costrouc ]; }; } diff --git a/pkgs/development/python-modules/cachetools/default.nix b/pkgs/development/python-modules/cachetools/default.nix index 21529174eb2d..1bff572b6032 100644 --- a/pkgs/development/python-modules/cachetools/default.nix +++ b/pkgs/development/python-modules/cachetools/default.nix @@ -7,7 +7,8 @@ buildPythonPackage rec { pname = "cachetools"; - version = "4.2.3"; + version = "4.2.4"; + format = "setuptools"; disabled = pythonOlder "3.6"; @@ -15,14 +16,16 @@ buildPythonPackage rec { owner = "tkem"; repo = pname; rev = "v${version}"; - sha256 = "sha256-9CHXvb+Nn3N2oWHwNbqKguzDO/q+4EnMZ50+E+MWS/A="; + sha256 = "sha256-doPLl7Ooc2cKlTiS/dqLTKSkTlSgPFztIumAzciM0bc="; }; checkInputs = [ pytestCheckHook ]; - pythonImportsCheck = [ "cachetools" ]; + pythonImportsCheck = [ + "cachetools" + ]; meta = with lib; { description = "Extensible memoizing collections and decorators"; diff --git a/pkgs/development/python-modules/cadquery/default.nix b/pkgs/development/python-modules/cadquery/default.nix index bc8cbe1f2c82..f7e436a41605 100644 --- a/pkgs/development/python-modules/cadquery/default.nix +++ b/pkgs/development/python-modules/cadquery/default.nix @@ -1,7 +1,6 @@ { lib , buildPythonPackage , toPythonModule -, isPy3k , pythonOlder , pythonAtLeast , fetchFromGitHub diff --git a/pkgs/development/python-modules/can/default.nix b/pkgs/development/python-modules/can/default.nix index 255a100ec688..188ab9cb5622 100644 --- a/pkgs/development/python-modules/can/default.nix +++ b/pkgs/development/python-modules/can/default.nix @@ -2,7 +2,6 @@ , buildPythonPackage , fetchPypi , pythonOlder -, isPy27 , aenum , wrapt , typing ? null @@ -12,7 +11,7 @@ , hypothesis , future , pytest -, pytest-timeout }: + }: buildPythonPackage rec { pname = "python-can"; diff --git a/pkgs/development/python-modules/capstone/default.nix b/pkgs/development/python-modules/capstone/default.nix index 6ab2ed91fe52..cea08d62c102 100644 --- a/pkgs/development/python-modules/capstone/default.nix +++ b/pkgs/development/python-modules/capstone/default.nix @@ -2,8 +2,6 @@ , buildPythonPackage , capstone , stdenv -, fetchpatch -, fetchPypi , setuptools }: diff --git a/pkgs/development/python-modules/carbon/default.nix b/pkgs/development/python-modules/carbon/default.nix index acc3aa144eba..b30df5ec5383 100644 --- a/pkgs/development/python-modules/carbon/default.nix +++ b/pkgs/development/python-modules/carbon/default.nix @@ -1,5 +1,4 @@ -{ lib, buildPythonPackage, fetchPypi, isPy3k -, twisted, whisper, txamqp, cachetools, urllib3 +{ lib, buildPythonPackage, fetchPypi, twisted, whisper, txamqp, cachetools, urllib3 }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/certbot-dns-google/default.nix b/pkgs/development/python-modules/certbot-dns-google/default.nix index 568986b60176..182ff720e13a 100644 --- a/pkgs/development/python-modules/certbot-dns-google/default.nix +++ b/pkgs/development/python-modules/certbot-dns-google/default.nix @@ -2,7 +2,6 @@ , acme , certbot , google-api-python-client -, isPy3k , oauth2client , pytestCheckHook , pythonOlder diff --git a/pkgs/development/python-modules/certbot-dns-rfc2136/default.nix b/pkgs/development/python-modules/certbot-dns-rfc2136/default.nix index c7f47dc7a398..f3da841667ba 100644 --- a/pkgs/development/python-modules/certbot-dns-rfc2136/default.nix +++ b/pkgs/development/python-modules/certbot-dns-rfc2136/default.nix @@ -2,7 +2,6 @@ , acme , certbot , dnspython -, isPy3k , pytestCheckHook , pythonOlder }: diff --git a/pkgs/development/python-modules/certbot-dns-route53/default.nix b/pkgs/development/python-modules/certbot-dns-route53/default.nix index 9644e99a10df..7052107418c9 100644 --- a/pkgs/development/python-modules/certbot-dns-route53/default.nix +++ b/pkgs/development/python-modules/certbot-dns-route53/default.nix @@ -2,7 +2,6 @@ , acme , boto3 , certbot -, isPy3k , pytestCheckHook , pythonOlder }: diff --git a/pkgs/development/python-modules/cftime/default.nix b/pkgs/development/python-modules/cftime/default.nix index 2196ddedc3ce..aeebc762701f 100644 --- a/pkgs/development/python-modules/cftime/default.nix +++ b/pkgs/development/python-modules/cftime/default.nix @@ -5,7 +5,6 @@ , pytest-cov , cython , numpy -, python }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/cirq-aqt/default.nix b/pkgs/development/python-modules/cirq-aqt/default.nix index 1dff0a121ffd..a240ce47d7e5 100644 --- a/pkgs/development/python-modules/cirq-aqt/default.nix +++ b/pkgs/development/python-modules/cirq-aqt/default.nix @@ -1,8 +1,5 @@ -{ lib -, buildPythonPackage +{ buildPythonPackage , cirq-core -, pythonOlder -, fetchFromGitHub , requests , pytestCheckHook }: diff --git a/pkgs/development/python-modules/cirq-core/default.nix b/pkgs/development/python-modules/cirq-core/default.nix index eae189ce4044..92045eb3e3ef 100644 --- a/pkgs/development/python-modules/cirq-core/default.nix +++ b/pkgs/development/python-modules/cirq-core/default.nix @@ -1,8 +1,8 @@ { lib -, stdenv , buildPythonPackage , pythonOlder , fetchFromGitHub +, fetchpatch , duet , matplotlib , networkx @@ -43,6 +43,22 @@ buildPythonPackage rec { sourceRoot = "source/${pname}"; + patches = [ + # present in upstream master - remove after 0.13.1 + (fetchpatch { + name = "fix-test-tolerances.part-1.patch"; + url = "https://github.com/quantumlib/Cirq/commit/eb1d9031e55d3c8801ea44abbb6a4132b2fc5126.patch"; + sha256 = "0ka24v6dfxnap9p07ni32z9zccbmw0lbrp5mcknmpsl12hza98xm"; + stripLen = 1; + }) + (fetchpatch { + name = "fix-test-tolerances.part-2.patch"; + url = "https://github.com/quantumlib/Cirq/commit/a28d601b2bcfc393336375c53e5915fd16455395.patch"; + sha256 = "0k2dqsm4ydn6556d40kc8j04jgjn59z4wqqg1jn1r916a7yxw493"; + stripLen = 1; + }) + ]; + postPatch = '' substituteInPlace requirements.txt \ --replace "matplotlib~=3.0" "matplotlib" \ @@ -84,10 +100,6 @@ buildPythonPackage rec { disabledTests = [ "test_metadata_search_path" # tries to import flynt, which isn't in Nixpkgs "test_benchmark_2q_xeb_fidelities" # fails due pandas MultiIndex. Maybe issue with pandas version in nix? - ] ++ lib.optionals stdenv.hostPlatform.isAarch64 [ - # Seem to fail due to math issues on aarch64? - "expectation_from_wavefunction" - "test_single_qubit_op_to_framed_phase_form_output_on_example_case" ]; meta = with lib; { diff --git a/pkgs/development/python-modules/cirq-google/default.nix b/pkgs/development/python-modules/cirq-google/default.nix index 34c6c3f09df5..5c8306c27fe9 100644 --- a/pkgs/development/python-modules/cirq-google/default.nix +++ b/pkgs/development/python-modules/cirq-google/default.nix @@ -1,6 +1,4 @@ -{ lib -, buildPythonPackage -, pythonOlder +{ buildPythonPackage , cirq-core , google-api-core , protobuf diff --git a/pkgs/development/python-modules/cirq-ionq/default.nix b/pkgs/development/python-modules/cirq-ionq/default.nix index 28451bdbb9c3..24ced1859580 100644 --- a/pkgs/development/python-modules/cirq-ionq/default.nix +++ b/pkgs/development/python-modules/cirq-ionq/default.nix @@ -1,8 +1,5 @@ -{ lib -, buildPythonPackage +{ buildPythonPackage , cirq-core -, pythonOlder -, fetchFromGitHub , requests , pytestCheckHook }: diff --git a/pkgs/development/python-modules/cirq-pasqal/default.nix b/pkgs/development/python-modules/cirq-pasqal/default.nix index d51cd21ff1e5..0743ee02dc74 100644 --- a/pkgs/development/python-modules/cirq-pasqal/default.nix +++ b/pkgs/development/python-modules/cirq-pasqal/default.nix @@ -1,8 +1,5 @@ -{ lib -, buildPythonPackage +{ buildPythonPackage , cirq-core -, pythonOlder -, fetchFromGitHub , requests , pytestCheckHook }: diff --git a/pkgs/development/python-modules/cirq-rigetti/default.nix b/pkgs/development/python-modules/cirq-rigetti/default.nix index 8717b09a49ce..f2fd48d54176 100644 --- a/pkgs/development/python-modules/cirq-rigetti/default.nix +++ b/pkgs/development/python-modules/cirq-rigetti/default.nix @@ -1,8 +1,5 @@ -{ lib -, buildPythonPackage +{ buildPythonPackage , cirq-core -, pythonOlder -, fetchFromGitHub , requests , pytestCheckHook , attrs @@ -34,6 +31,7 @@ buildPythonPackage rec { postPatch = '' substituteInPlace requirements.txt \ --replace "attrs~=20.3.0" "attrs" \ + --replace "certifi~=2021.5.30" "certifi" \ --replace "h11~=0.9.0" "h11" \ --replace "httpcore~=0.11.1" "httpcore" \ --replace "httpx~=0.15.5" "httpx" \ diff --git a/pkgs/development/python-modules/cirq-web/default.nix b/pkgs/development/python-modules/cirq-web/default.nix index 551a799933f0..aa61157fe0d7 100644 --- a/pkgs/development/python-modules/cirq-web/default.nix +++ b/pkgs/development/python-modules/cirq-web/default.nix @@ -1,8 +1,5 @@ -{ lib -, buildPythonPackage +{ buildPythonPackage , cirq-core -, pythonOlder -, fetchFromGitHub , pytestCheckHook }: diff --git a/pkgs/development/python-modules/cirq/default.nix b/pkgs/development/python-modules/cirq/default.nix index bd6a06cd95d5..6e428eeb4ef6 100644 --- a/pkgs/development/python-modules/cirq/default.nix +++ b/pkgs/development/python-modules/cirq/default.nix @@ -1,5 +1,4 @@ -{ lib -, buildPythonPackage +{ buildPythonPackage , cirq-aqt , cirq-core , cirq-google diff --git a/pkgs/development/python-modules/claripy/default.nix b/pkgs/development/python-modules/claripy/default.nix index 097ff92258d6..76d0f730401c 100644 --- a/pkgs/development/python-modules/claripy/default.nix +++ b/pkgs/development/python-modules/claripy/default.nix @@ -13,14 +13,14 @@ buildPythonPackage rec { pname = "claripy"; - version = "9.0.10339"; + version = "9.0.10534"; disabled = pythonOlder "3.6"; src = fetchFromGitHub { owner = "angr"; repo = pname; rev = "v${version}"; - sha256 = "sha256-pi/XMVk50zVCW+MLP1Dsm5amJ55PHE4Ey4nIvhCwiwk="; + sha256 = "sha256-WeqfNVGQio5ugC14iv0ls5b3O1ymEjfpV8J47cCqXeQ="; }; # Use upstream z3 implementation diff --git a/pkgs/development/python-modules/cle/default.nix b/pkgs/development/python-modules/cle/default.nix index ad9e7b5c78b7..950b6c903fb2 100644 --- a/pkgs/development/python-modules/cle/default.nix +++ b/pkgs/development/python-modules/cle/default.nix @@ -15,7 +15,7 @@ let # The binaries are following the argr projects release cycle - version = "9.0.10339"; + version = "9.0.10534"; # Binary files from https://github.com/angr/binaries (only used for testing and only here) binaries = fetchFromGitHub { @@ -35,7 +35,7 @@ buildPythonPackage rec { owner = "angr"; repo = pname; rev = "v${version}"; - sha256 = "sha256-LbQyVWDgxXkltf4rx0KB/ek1grpN3ofqvWb4Bxty6AQ="; + sha256 = "sha256-edZC0pZf6A2lpqJDfpMeslLQQGEokq4B9qywgS7wLxo="; }; propagatedBuildInputs = [ @@ -66,9 +66,13 @@ buildPythonPackage rec { "test_ppc_addr16_lo_relocation" # Binary not found, seems to be missing in the current binaries release "test_plt_full_relro" + # Test fails + "test_tls_pe_incorrect_tls_data_start" ]; - pythonImportsCheck = [ "cle" ]; + pythonImportsCheck = [ + "cle" + ]; meta = with lib; { description = "Python loader for many binary formats"; diff --git a/pkgs/development/python-modules/cleo/default.nix b/pkgs/development/python-modules/cleo/default.nix index 3e46b900dc7c..e79983b1bb29 100644 --- a/pkgs/development/python-modules/cleo/default.nix +++ b/pkgs/development/python-modules/cleo/default.nix @@ -1,5 +1,5 @@ { lib, buildPythonPackage, fetchPypi -, pylev, pastel, clikit }: +, clikit }: buildPythonPackage rec { pname = "cleo"; diff --git a/pkgs/development/python-modules/cliff/tests.nix b/pkgs/development/python-modules/cliff/tests.nix index f7cc0226f2fc..b981e78be0c7 100644 --- a/pkgs/development/python-modules/cliff/tests.nix +++ b/pkgs/development/python-modules/cliff/tests.nix @@ -1,5 +1,4 @@ -{ stdenv -, buildPythonPackage +{ buildPythonPackage , cliff , docutils , stestr diff --git a/pkgs/development/python-modules/cock/default.nix b/pkgs/development/python-modules/cock/default.nix index 683234b88727..e7428823ad9e 100644 --- a/pkgs/development/python-modules/cock/default.nix +++ b/pkgs/development/python-modules/cock/default.nix @@ -1,4 +1,4 @@ -{ lib, buildPythonPackage, fetchPypi, locale, pytestCheckHook, click, sortedcontainers, pyyaml }: +{ lib, buildPythonPackage, fetchPypi, click, sortedcontainers, pyyaml }: buildPythonPackage rec { pname = "cock"; diff --git a/pkgs/development/python-modules/coconut/default.nix b/pkgs/development/python-modules/coconut/default.nix index b140f8110a6d..b7301cf1e73a 100644 --- a/pkgs/development/python-modules/coconut/default.nix +++ b/pkgs/development/python-modules/coconut/default.nix @@ -1,7 +1,6 @@ { lib , buildPythonApplication , fetchFromGitHub -, fetchpatch , cpyparsing , ipykernel , mypy @@ -15,30 +14,22 @@ buildPythonApplication rec { pname = "coconut"; - version = "1.5.0"; + version = "1.6.0"; src = fetchFromGitHub { owner = "evhub"; repo = "coconut"; rev = "v${version}"; - sha256 = "1gc0fwqwzn1j6mcg1f6fw832w66pbaaq9mmi0r4kw3xn5f877icz"; + sha256 = "/397YGV6QWWmKfqr5hSvqRoPOu7Hx1Pak6rVPR3etzw="; }; propagatedBuildInputs = [ cpyparsing ipykernel mypy pygments prompt-toolkit watchdog ]; - postPatch = '' - substituteInPlace coconut/kernel_installer.py \ - --replace "fixpath(os.path.join(sys.exec_prefix, icoconut_custom_kernel_install_loc))" \ - "fixpath(icoconut_custom_kernel_install_loc)" - ''; - checkInputs = [ pexpect pytestCheckHook tkinter ]; - # Currently most tests do not work on Hydra due to external fetches. + # Currently most tests have performance issues pytestFlagsArray = [ "tests/constants_test.py" - "tests/main_test.py::TestShell::test_compile_to_file" - "tests/main_test.py::TestShell::test_convenience" ]; pythonImportsCheck = [ "coconut" ]; diff --git a/pkgs/development/python-modules/cocotb-bus/default.nix b/pkgs/development/python-modules/cocotb-bus/default.nix index 3ee4d35e3e4e..a0c4767fe7de 100644 --- a/pkgs/development/python-modules/cocotb-bus/default.nix +++ b/pkgs/development/python-modules/cocotb-bus/default.nix @@ -1,5 +1,4 @@ { lib -, stdenv , buildPythonPackage , fetchPypi }: diff --git a/pkgs/development/python-modules/colanderalchemy/default.nix b/pkgs/development/python-modules/colanderalchemy/default.nix index a3fa33f327c5..20f45f1fa75f 100644 --- a/pkgs/development/python-modules/colanderalchemy/default.nix +++ b/pkgs/development/python-modules/colanderalchemy/default.nix @@ -1,7 +1,6 @@ { lib , buildPythonPackage , fetchPypi -, unittest2 , colander , sqlalchemy }: diff --git a/pkgs/development/python-modules/colorcet/default.nix b/pkgs/development/python-modules/colorcet/default.nix index 6135730beb00..42945e8a152a 100644 --- a/pkgs/development/python-modules/colorcet/default.nix +++ b/pkgs/development/python-modules/colorcet/default.nix @@ -1,7 +1,6 @@ { lib , buildPythonPackage , fetchPypi -, nbsmoke , param , pyct , pytest-mpl diff --git a/pkgs/development/python-modules/colormath/default.nix b/pkgs/development/python-modules/colormath/default.nix index 80f58250be4d..b749761da06c 100644 --- a/pkgs/development/python-modules/colormath/default.nix +++ b/pkgs/development/python-modules/colormath/default.nix @@ -4,7 +4,6 @@ , nose , numpy , lib -, pytest }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/colorspacious/default.nix b/pkgs/development/python-modules/colorspacious/default.nix index 3ce0bddf1def..6f75d343066a 100644 --- a/pkgs/development/python-modules/colorspacious/default.nix +++ b/pkgs/development/python-modules/colorspacious/default.nix @@ -1,5 +1,4 @@ -{ lib, pkgs, buildPythonPackage, fetchPypi, isPy3k -, numpy +{ lib, buildPythonPackage, fetchPypi, numpy }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/commoncode/default.nix b/pkgs/development/python-modules/commoncode/default.nix index 04921a618c25..142245221312 100644 --- a/pkgs/development/python-modules/commoncode/default.nix +++ b/pkgs/development/python-modules/commoncode/default.nix @@ -1,4 +1,5 @@ { lib +, stdenv , attrs , beautifulsoup4 , buildPythonPackage @@ -48,6 +49,11 @@ buildPythonPackage rec { pytestCheckHook pytest-xdist ]; + disabledTests = lib.optionals stdenv.isDarwin [ + # expected result is tailored towards the quirks of upstream's + # CI environment on darwin + "test_searchable_paths" + ]; pythonImportsCheck = [ "commoncode" diff --git a/pkgs/development/python-modules/confight/default.nix b/pkgs/development/python-modules/confight/default.nix new file mode 100644 index 000000000000..ff07a0f8b646 --- /dev/null +++ b/pkgs/development/python-modules/confight/default.nix @@ -0,0 +1,30 @@ +{ lib +, buildPythonPackage +, fetchPypi +, toml +}: + +buildPythonPackage rec { + pname = "confight"; + version = "1.3.1"; + + src = fetchPypi { + inherit pname version; + sha256 = "sha256-fJr7f9Y/zEpCedWYd04AMuhkOFqZLJOw4sDiz8SDQ/Y="; + }; + + propagatedBuildInputs = [ + toml + ]; + + pythonImportsCheck = [ "confight" ]; + + doCheck = false; + + meta = with lib; { + description = "Python context manager for managing pid files"; + homepage = "https://github.com/avature/confight"; + license = with licenses; [ mit ]; + maintainers = with maintainers; [ mkg20001 ]; + }; +} diff --git a/pkgs/development/python-modules/consonance/default.nix b/pkgs/development/python-modules/consonance/default.nix index 3940686f18c7..7722226ef3f1 100644 --- a/pkgs/development/python-modules/consonance/default.nix +++ b/pkgs/development/python-modules/consonance/default.nix @@ -1,4 +1,4 @@ -{ buildPythonPackage, lib, fetchFromGitHub, pytest, dissononce, python-axolotl-curve25519 +{ buildPythonPackage, lib, fetchFromGitHub, dissononce, python-axolotl-curve25519 , transitions, protobuf, nose }: diff --git a/pkgs/development/python-modules/construct/2.10.54.nix b/pkgs/development/python-modules/construct/2.10.54.nix index 6bb279490ab2..2f38ab9c3ced 100644 --- a/pkgs/development/python-modules/construct/2.10.54.nix +++ b/pkgs/development/python-modules/construct/2.10.54.nix @@ -1,5 +1,4 @@ -{ lib, stdenv, buildPythonPackage, fetchFromGitHub, pythonOlder -, six, pytestCheckHook, pytest-benchmark, enum34, numpy, arrow, ruamel_yaml +{ lib, stdenv, buildPythonPackage, fetchFromGitHub, pytestCheckHook, pytest-benchmark, enum34, numpy, arrow, ruamel_yaml }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/construct/default.nix b/pkgs/development/python-modules/construct/default.nix index 4ad78ddad3b6..75791a153f42 100644 --- a/pkgs/development/python-modules/construct/default.nix +++ b/pkgs/development/python-modules/construct/default.nix @@ -1,5 +1,5 @@ { lib, stdenv, buildPythonPackage, fetchFromGitHub, pythonOlder -, six, pytestCheckHook, pytest-benchmark, numpy, arrow, ruamel_yaml +, pytestCheckHook, pytest-benchmark, numpy, arrow, ruamel_yaml , lz4, cloudpickle }: diff --git a/pkgs/development/python-modules/cpyparsing/default.nix b/pkgs/development/python-modules/cpyparsing/default.nix index 2cba79b4886e..638824a87ee9 100644 --- a/pkgs/development/python-modules/cpyparsing/default.nix +++ b/pkgs/development/python-modules/cpyparsing/default.nix @@ -2,13 +2,13 @@ buildPythonPackage rec { pname = "cpyparsing"; - version = "2.4.5.0.1.2"; + version = "2.4.7.1.0.0"; src = fetchFromGitHub { owner = "evhub"; repo = pname; - rev = "38f2b323b99cee9a080106ae9951ffc5752599f0"; # No tags on repo - sha256 = "0wrm6vzwp968z7s0qhr23v39ivyxzvav3mv9i2n0iv9zl041kypv"; + rev = "09073751d92cb40fb71c927c006baddc082df1db"; # No tags on repo + sha256 = "O9IdHipAxxbFcDFYNvmczue/wT4AF9Xb5uc3ZTAlTlo="; }; nativeBuildInputs = [ cython ]; diff --git a/pkgs/development/python-modules/crashtest/default.nix b/pkgs/development/python-modules/crashtest/default.nix index 9981b56f2c09..5b084cdd8c84 100644 --- a/pkgs/development/python-modules/crashtest/default.nix +++ b/pkgs/development/python-modules/crashtest/default.nix @@ -1,4 +1,4 @@ -{ lib, buildPythonPackage, fetchFromGitHub, fetchPypi, pythonAtLeast, pytest }: +{ lib, buildPythonPackage, fetchPypi, pythonAtLeast }: buildPythonPackage rec { pname = "crashtest"; diff --git a/pkgs/development/python-modules/crownstone-cloud/default.nix b/pkgs/development/python-modules/crownstone-cloud/default.nix index 882f7d95df57..8b02eaa58961 100644 --- a/pkgs/development/python-modules/crownstone-cloud/default.nix +++ b/pkgs/development/python-modules/crownstone-cloud/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "crownstone-cloud"; - version = "1.4.8"; + version = "1.4.9"; format = "setuptools"; disabled = pythonOlder "3.8"; @@ -19,7 +19,7 @@ buildPythonPackage rec { owner = "crownstone"; repo = "crownstone-lib-python-cloud"; rev = version; - sha256 = "sha256-iHn4g52/QM0TS/flKkcFrX6IFrCjiXUxcjVLHNg6tVo="; + sha256 = "sha256-CS1zeQiWPnsGCWixCsN9sz08mPORW5sVqIpSFPh0Qt0="; }; propagatedBuildInputs = [ @@ -32,11 +32,6 @@ buildPythonPackage rec { pytestCheckHook ]; - disabledTests = [ - # https://github.com/crownstone/crownstone-lib-python-cloud/issues/1 - "test_data_structure" - ]; - postPatch = '' sed -i '/codecov/d' requirements.txt ''; diff --git a/pkgs/development/python-modules/crownstone-core/default.nix b/pkgs/development/python-modules/crownstone-core/default.nix index 35289cf1956c..be23d054a4eb 100644 --- a/pkgs/development/python-modules/crownstone-core/default.nix +++ b/pkgs/development/python-modules/crownstone-core/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "crownstone-core"; - version = "3.0.1"; + version = "3.1.0"; format = "setuptools"; disabled = pythonOlder "3.8"; @@ -17,7 +17,7 @@ buildPythonPackage rec { owner = "crownstone"; repo = "crownstone-lib-python-core"; rev = version; - sha256 = "138lignv7c8kkqbqfkdcfpg39gm9x44h7r2j403m4ib7gq420hsn"; + sha256 = "sha256-ujS4ho9io7KcoK5w1SCn7UPFg1ho3dgW0HS5HfsYsuU="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/crownstone-sse/default.nix b/pkgs/development/python-modules/crownstone-sse/default.nix index ef2e2cbc240c..ff101713cfed 100644 --- a/pkgs/development/python-modules/crownstone-sse/default.nix +++ b/pkgs/development/python-modules/crownstone-sse/default.nix @@ -5,7 +5,6 @@ , certifi , fetchFromGitHub , pythonOlder -, coverage }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/crownstone-uart/default.nix b/pkgs/development/python-modules/crownstone-uart/default.nix index fd1c2094335c..b8ed7721f064 100644 --- a/pkgs/development/python-modules/crownstone-uart/default.nix +++ b/pkgs/development/python-modules/crownstone-uart/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "crownstone-uart"; - version = "2.1.0"; + version = "2.2.0"; format = "setuptools"; disabled = pythonOlder "3.8"; @@ -17,7 +17,7 @@ buildPythonPackage rec { owner = "crownstone"; repo = "crownstone-lib-python-uart"; rev = version; - sha256 = "0sdz131vmrfp6hrm9iwqw8mj9qazsxg7b85yadib1122w9f3b1zc"; + sha256 = "sha256-5K7NzJ7fKOW4Uh1XIlicVkRZuM84qTM5RQc/DfP9OEc="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/cryptography/3.3.nix b/pkgs/development/python-modules/cryptography/3.3.nix index 049718520753..357bb35dacf7 100644 --- a/pkgs/development/python-modules/cryptography/3.3.nix +++ b/pkgs/development/python-modules/cryptography/3.3.nix @@ -1,7 +1,6 @@ { lib, stdenv , buildPythonPackage , fetchPypi -, fetchpatch , isPy27 , ipaddress , openssl @@ -9,7 +8,6 @@ , darwin , packaging , six -, pythonOlder , isPyPy , cffi , pytest diff --git a/pkgs/development/python-modules/cryptography/default.nix b/pkgs/development/python-modules/cryptography/default.nix index 2fea6e89494d..eddd7e0b4402 100644 --- a/pkgs/development/python-modules/cryptography/default.nix +++ b/pkgs/development/python-modules/cryptography/default.nix @@ -1,7 +1,6 @@ { lib, stdenv , buildPythonPackage , fetchPypi -, fetchpatch , rustPlatform , setuptools-rust , openssl @@ -9,7 +8,6 @@ , darwin , packaging , six -, pythonOlder , isPyPy , cffi , pytest diff --git a/pkgs/development/python-modules/cyclonedx-python-lib/default.nix b/pkgs/development/python-modules/cyclonedx-python-lib/default.nix index 6d68cfb0f1e6..aec7d975a77c 100644 --- a/pkgs/development/python-modules/cyclonedx-python-lib/default.nix +++ b/pkgs/development/python-modules/cyclonedx-python-lib/default.nix @@ -9,12 +9,14 @@ , requirements-parser , setuptools , toml +, types-setuptools +, types-toml , tox }: buildPythonPackage rec { pname = "cyclonedx-python-lib"; - version = "0.10.2"; + version = "0.11.1"; format = "pyproject"; disabled = pythonOlder "3.6"; @@ -23,7 +25,7 @@ buildPythonPackage rec { owner = "CycloneDX"; repo = pname; rev = "v${version}"; - sha256 = "11sbnlbxighmmygrlgg4d31y70067pxzjsirwicaslfq95wgdlav"; + sha256 = "sha256-+Gu9WaGC2R5TC8XSqDNSJ3t7aMS69IeeKTzytYFcHvE="; }; nativeBuildInputs = [ @@ -36,6 +38,8 @@ buildPythonPackage rec { requirements-parser setuptools toml + types-setuptools + types-toml ]; checkInputs = [ diff --git a/pkgs/development/python-modules/cytoolz/default.nix b/pkgs/development/python-modules/cytoolz/default.nix index 4e862d260927..86ee238eb10f 100644 --- a/pkgs/development/python-modules/cytoolz/default.nix +++ b/pkgs/development/python-modules/cytoolz/default.nix @@ -5,7 +5,6 @@ , nose , toolz , python -, fetchpatch , isPy27 }: diff --git a/pkgs/development/python-modules/dash/default.nix b/pkgs/development/python-modules/dash/default.nix index 7a8b71346353..3fd9d2a41d58 100644 --- a/pkgs/development/python-modules/dash/default.nix +++ b/pkgs/development/python-modules/dash/default.nix @@ -4,9 +4,7 @@ , plotly , flask , flask-compress -, future , dash-core-components -, dash-renderer , dash-html-components , dash-table , pytest-mock diff --git a/pkgs/development/python-modules/dask/default.nix b/pkgs/development/python-modules/dask/default.nix index 68e5304932df..39d01559d460 100644 --- a/pkgs/development/python-modules/dask/default.nix +++ b/pkgs/development/python-modules/dask/default.nix @@ -5,6 +5,7 @@ , cloudpickle , distributed , fetchFromGitHub +, fetchpatch , fsspec , jinja2 , numpy @@ -22,7 +23,7 @@ buildPythonPackage rec { pname = "dask"; - version = "2021.09.1"; + version = "2021.10.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -31,9 +32,19 @@ buildPythonPackage rec { owner = "dask"; repo = pname; rev = version; - sha256 = "sha256-+UkbXbWV5R/QtVb5rWm/5SA+IoWsIfBciL3vg138jkc="; + sha256 = "07ysrs46x5w8rc2df0j06rsw58ahcysd6lwjk5riqpjlpwdfmg7p"; }; + patches = [ + # remove with next bump + (fetchpatch { + name = "fix-tests-against-distributed-2021.10.0.patch"; + url = "https://github.com/dask/dask/commit/cd65507841448ad49001cf27564102e2fb964d0a.patch"; + includes = [ "dask/tests/test_distributed.py" ]; + sha256 = "1i4i4k1lzxcydq9l80jyifq21ny0j3i47rviq07ai488pvx1r2al"; + }) + ]; + propagatedBuildInputs = [ cloudpickle fsspec diff --git a/pkgs/development/python-modules/datatable/default.nix b/pkgs/development/python-modules/datatable/default.nix index 60eb0df1d09d..0cc7d43d5049 100644 --- a/pkgs/development/python-modules/datatable/default.nix +++ b/pkgs/development/python-modules/datatable/default.nix @@ -1,4 +1,4 @@ -{ stdenv, lib, buildPythonPackage, fetchPypi, substituteAll, pythonOlder +{ stdenv, lib, buildPythonPackage, fetchPypi, pythonOlder , pipInstallHook, writeText , blessed , docutils diff --git a/pkgs/development/python-modules/dateparser/default.nix b/pkgs/development/python-modules/dateparser/default.nix index e1f2f9336877..4b9275f757b0 100644 --- a/pkgs/development/python-modules/dateparser/default.nix +++ b/pkgs/development/python-modules/dateparser/default.nix @@ -2,7 +2,6 @@ , buildPythonPackage , isPy3k , fetchFromGitHub -, fetchpatch , python-dateutil , pytz , regex diff --git a/pkgs/development/python-modules/debian-inspector/default.nix b/pkgs/development/python-modules/debian-inspector/default.nix index b91e26f71467..0da7f634d848 100644 --- a/pkgs/development/python-modules/debian-inspector/default.nix +++ b/pkgs/development/python-modules/debian-inspector/default.nix @@ -1,7 +1,6 @@ { lib , buildPythonPackage , fetchPypi -, pythonAtLeast , chardet , attrs , commoncode diff --git a/pkgs/development/python-modules/debtcollector/tests.nix b/pkgs/development/python-modules/debtcollector/tests.nix index cc3171da6d6e..21d49ac983ab 100644 --- a/pkgs/development/python-modules/debtcollector/tests.nix +++ b/pkgs/development/python-modules/debtcollector/tests.nix @@ -1,5 +1,4 @@ -{ stdenv -, buildPythonPackage +{ buildPythonPackage , debtcollector , stestr }: diff --git a/pkgs/development/python-modules/deep_merge/default.nix b/pkgs/development/python-modules/deep_merge/default.nix index 533bc6aa3477..2c59d4ab6955 100644 --- a/pkgs/development/python-modules/deep_merge/default.nix +++ b/pkgs/development/python-modules/deep_merge/default.nix @@ -1,4 +1,4 @@ -{ lib, buildPythonPackage, fetchPypi, pytestCheckHook, nose }: +{ lib, buildPythonPackage, fetchPypi, nose }: buildPythonPackage rec { pname = "deep_merge"; diff --git a/pkgs/development/python-modules/deepdiff/default.nix b/pkgs/development/python-modules/deepdiff/default.nix index 199894f13201..67f5347e1e7e 100644 --- a/pkgs/development/python-modules/deepdiff/default.nix +++ b/pkgs/development/python-modules/deepdiff/default.nix @@ -23,6 +23,11 @@ buildPythonPackage rec { sha256 = "sha256-ysaIeVefsTX7ZubOXaEzeS1kMyBp4/w3SHNFxsGVhzY="; }; + postPatch = '' + substituteInPlace tests/test_command.py \ + --replace '/tmp/' "$TMPDIR/" + ''; + propagatedBuildInputs = [ click ordered-set diff --git a/pkgs/development/python-modules/delegator-py/default.nix b/pkgs/development/python-modules/delegator-py/default.nix index 3521e8ce1298..89cbd991a663 100644 --- a/pkgs/development/python-modules/delegator-py/default.nix +++ b/pkgs/development/python-modules/delegator-py/default.nix @@ -2,7 +2,6 @@ , lib , fetchFromGitHub , pexpect -, pytest }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/deltachat/default.nix b/pkgs/development/python-modules/deltachat/default.nix index 78f42bdfceb0..381bcf66a5c0 100644 --- a/pkgs/development/python-modules/deltachat/default.nix +++ b/pkgs/development/python-modules/deltachat/default.nix @@ -1,7 +1,6 @@ { lib , buildPythonPackage , isPy27 -, fetchpatch , setuptools-scm , libdeltachat , cffi diff --git a/pkgs/development/python-modules/devolo-home-control-api/default.nix b/pkgs/development/python-modules/devolo-home-control-api/default.nix index 751ebaae292c..b71ce7c6c271 100644 --- a/pkgs/development/python-modules/devolo-home-control-api/default.nix +++ b/pkgs/development/python-modules/devolo-home-control-api/default.nix @@ -1,5 +1,4 @@ { lib -, aiohttp , buildPythonPackage , fetchFromGitHub , pytest-mock diff --git a/pkgs/development/python-modules/devtools/default.nix b/pkgs/development/python-modules/devtools/default.nix index fdb240dde842..98f446315d91 100644 --- a/pkgs/development/python-modules/devtools/default.nix +++ b/pkgs/development/python-modules/devtools/default.nix @@ -1,9 +1,19 @@ -{ buildPythonPackage, pythonOlder, fetchFromGitHub, lib, pygments -, pytestCheckHook, pytest-mock }: +{ lib +, asttokens +, buildPythonPackage +, executing +, fetchFromGitHub +, pygments +, pytest-mock +, pytestCheckHook +, pythonOlder +}: buildPythonPackage rec { pname = "devtools"; version = "0.8.0"; + format = "setuptools"; + disabled = pythonOlder "3.6"; src = fetchFromGitHub { @@ -13,11 +23,25 @@ buildPythonPackage rec { sha256 = "0yavcbxzxi1nfa1k326gsl03y8sadi5z5acamwd8b1bsiv15p757"; }; - propagatedBuildInputs = [ pygments ]; + propagatedBuildInputs = [ + asttokens + executing + pygments + ]; - checkInputs = [ pytestCheckHook pytest-mock ]; + checkInputs = [ + pytestCheckHook + pytest-mock + ]; - pythonImportsCheck = [ "devtools" ]; + disabledTests = [ + # Test for Windows32 + "test_print_subprocess" + ]; + + pythonImportsCheck = [ + "devtools" + ]; meta = with lib; { description = "Python's missing debug print command and other development tools"; diff --git a/pkgs/development/python-modules/digitalocean/default.nix b/pkgs/development/python-modules/digitalocean/default.nix index f87298cf0875..5e45a1785a95 100644 --- a/pkgs/development/python-modules/digitalocean/default.nix +++ b/pkgs/development/python-modules/digitalocean/default.nix @@ -1,7 +1,6 @@ { lib , buildPythonPackage , fetchFromGitHub -, fetchPypi , isPy3k , jsonpickle , mock diff --git a/pkgs/development/python-modules/distributed/default.nix b/pkgs/development/python-modules/distributed/default.nix index 049290081d62..b623fe302783 100644 --- a/pkgs/development/python-modules/distributed/default.nix +++ b/pkgs/development/python-modules/distributed/default.nix @@ -19,13 +19,13 @@ buildPythonPackage rec { pname = "distributed"; - version = "2021.9.1"; + version = "2021.10.0"; disabled = pythonOlder "3.6"; # get full repository need conftest.py to run tests src = fetchPypi { inherit pname version; - sha256 = "sha256-9N65ap2+9bBK0DCrkF3+1xuJPXmjaL1Xh7ISaLTtX/g="; + sha256 = "0kfq7lwv2n2wiws4v2rj36wx56jvkp2fl6zxg04p2lc3vcgha9za"; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/django-cleanup/default.nix b/pkgs/development/python-modules/django-cleanup/default.nix index faddf5620814..240598cf1841 100644 --- a/pkgs/development/python-modules/django-cleanup/default.nix +++ b/pkgs/development/python-modules/django-cleanup/default.nix @@ -1,5 +1,4 @@ { lib, buildPythonPackage, fetchPypi, django -, redis, async-timeout, hiredis }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/django-extensions/default.nix b/pkgs/development/python-modules/django-extensions/default.nix index cbe5dfbaa70b..541f0434ec00 100644 --- a/pkgs/development/python-modules/django-extensions/default.nix +++ b/pkgs/development/python-modules/django-extensions/default.nix @@ -1,5 +1,4 @@ -{ lib, buildPythonPackage, fetchFromGitHub, pythonOlder, python -, django +{ lib, buildPythonPackage, fetchFromGitHub, pythonOlder, django , factory_boy , glibcLocales , mock diff --git a/pkgs/development/python-modules/django-formtools/default.nix b/pkgs/development/python-modules/django-formtools/default.nix index faca36c2a98b..311fae425a5e 100644 --- a/pkgs/development/python-modules/django-formtools/default.nix +++ b/pkgs/development/python-modules/django-formtools/default.nix @@ -1,4 +1,4 @@ -{ stdenv, lib, buildPythonPackage, fetchPypi, django, python }: +{ lib, buildPythonPackage, fetchPypi, django, python }: buildPythonPackage rec { pname = "django-formtools"; diff --git a/pkgs/development/python-modules/django-paintstore/default.nix b/pkgs/development/python-modules/django-paintstore/default.nix index 8790067e4af0..28a773a5c01b 100644 --- a/pkgs/development/python-modules/django-paintstore/default.nix +++ b/pkgs/development/python-modules/django-paintstore/default.nix @@ -1,5 +1,4 @@ -{ lib, buildPythonPackage, fetchPypi, requests, requests_oauthlib -, django, python3-openid }: +{ lib, buildPythonPackage, fetchPypi }: buildPythonPackage rec { pname = "django-paintstore"; diff --git a/pkgs/development/python-modules/django-prometheus/default.nix b/pkgs/development/python-modules/django-prometheus/default.nix index bd97f2a73614..8708a95a4798 100644 --- a/pkgs/development/python-modules/django-prometheus/default.nix +++ b/pkgs/development/python-modules/django-prometheus/default.nix @@ -3,7 +3,6 @@ , pythonOlder , fetchFromGitHub , prometheus-client -, psycopg2 , pytest-django , pytestCheckHook }: diff --git a/pkgs/development/python-modules/django-ranged-response/default.nix b/pkgs/development/python-modules/django-ranged-response/default.nix index df5fc4b205b1..5fb0545f1fee 100644 --- a/pkgs/development/python-modules/django-ranged-response/default.nix +++ b/pkgs/development/python-modules/django-ranged-response/default.nix @@ -1,4 +1,4 @@ -{ lib, fetchurl, fetchPypi, buildPythonPackage, django }: +{ lib, fetchPypi, buildPythonPackage, django }: buildPythonPackage rec { pname = "django-ranged-response"; diff --git a/pkgs/development/python-modules/django-statici18n/default.nix b/pkgs/development/python-modules/django-statici18n/default.nix index 88c63319a89d..95b860a3331d 100644 --- a/pkgs/development/python-modules/django-statici18n/default.nix +++ b/pkgs/development/python-modules/django-statici18n/default.nix @@ -1,4 +1,4 @@ -{ stdenv, lib, buildPythonPackage, fetchPypi, django, django_appconf }: +{ lib, buildPythonPackage, fetchPypi, django, django_appconf }: buildPythonPackage rec { pname = "django-statici18n"; diff --git a/pkgs/development/python-modules/django-tables2/default.nix b/pkgs/development/python-modules/django-tables2/default.nix index 5cd1db3e7194..41637e7472ca 100644 --- a/pkgs/development/python-modules/django-tables2/default.nix +++ b/pkgs/development/python-modules/django-tables2/default.nix @@ -4,7 +4,6 @@ , fetchFromGitHub , django , tablib -, django-filter , python }: diff --git a/pkgs/development/python-modules/django-taggit/default.nix b/pkgs/development/python-modules/django-taggit/default.nix index e410b72437c0..7f7cfd2b4bcb 100644 --- a/pkgs/development/python-modules/django-taggit/default.nix +++ b/pkgs/development/python-modules/django-taggit/default.nix @@ -4,8 +4,6 @@ , fetchPypi , django , djangorestframework -, mock -, isort , python }: diff --git a/pkgs/development/python-modules/django_environ/default.nix b/pkgs/development/python-modules/django_environ/default.nix index 7c36db1d1187..633d3e7286eb 100644 --- a/pkgs/development/python-modules/django_environ/default.nix +++ b/pkgs/development/python-modules/django_environ/default.nix @@ -7,11 +7,11 @@ buildPythonPackage rec { pname = "django-environ"; - version = "0.7.0"; + version = "0.8.1"; src = fetchPypi { inherit pname version; - sha256 = "b99bd3704221f8b717c8517d8146e53fdee509d9e99056be560060003b92213e"; + sha256 = "6f0bc902b43891656b20486938cba0861dc62892784a44919170719572a534cb"; }; # The testsuite fails to modify the base environment diff --git a/pkgs/development/python-modules/dlib/default.nix b/pkgs/development/python-modules/dlib/default.nix index 58ceb16870a8..642794835654 100644 --- a/pkgs/development/python-modules/dlib/default.nix +++ b/pkgs/development/python-modules/dlib/default.nix @@ -1,4 +1,4 @@ -{ buildPythonPackage, stdenv, lib, dlib, python, pytest, more-itertools +{ stdenv, buildPythonPackage, dlib, python, pytest, more-itertools , sse4Support ? stdenv.hostPlatform.sse4_1Support , avxSupport ? stdenv.hostPlatform.avxSupport }: diff --git a/pkgs/development/python-modules/dnspython/1.nix b/pkgs/development/python-modules/dnspython/1.nix index 5ff02c043380..d4015f1f4ab6 100644 --- a/pkgs/development/python-modules/dnspython/1.nix +++ b/pkgs/development/python-modules/dnspython/1.nix @@ -1,7 +1,6 @@ { lib , buildPythonPackage , fetchPypi -, pythonOlder }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/docstring-to-markdown/default.nix b/pkgs/development/python-modules/docstring-to-markdown/default.nix new file mode 100644 index 000000000000..f4f2a36f5394 --- /dev/null +++ b/pkgs/development/python-modules/docstring-to-markdown/default.nix @@ -0,0 +1,37 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, pytestCheckHook +}: + +buildPythonPackage rec { + pname = "docstring-to-markdown"; + version = "0.9"; + + src = fetchFromGitHub { + owner = "python-lsp"; + repo = pname; + rev = "v${version}"; + sha256 = "sha256-XVTlSqqWmvnB5nvjvgGDJmg71KKTq2hHB4//QW7ugvA="; + }; + + patches = [ + # So pytest-flake8 and pytest-cov won't be needed + ./remove-coverage-tests.patch + ]; + + checkInputs = [ + pytestCheckHook + ]; + + pythonImportsCheck = [ + "docstring_to_markdown" + ]; + + meta = with lib; { + homepage = "https://github.com/python-lsp/docstring-to-markdown"; + description = "On the fly conversion of Python docstrings to markdown"; + license = licenses.lgpl2Plus; + maintainers = with maintainers; [ doronbehar ]; + }; +} diff --git a/pkgs/development/python-modules/docstring-to-markdown/remove-coverage-tests.patch b/pkgs/development/python-modules/docstring-to-markdown/remove-coverage-tests.patch new file mode 100644 index 000000000000..68bc626ced91 --- /dev/null +++ b/pkgs/development/python-modules/docstring-to-markdown/remove-coverage-tests.patch @@ -0,0 +1,16 @@ +diff --git i/setup.cfg w/setup.cfg +index e880e74..e77133e 100644 +--- i/setup.cfg ++++ w/setup.cfg +@@ -34,11 +34,7 @@ docstring-to-markdown = py.typed + [tool:pytest] + addopts = + --pyargs tests +- --cov docstring_to_markdown +- --cov-fail-under=98 +- --cov-report term-missing:skip-covered + -p no:warnings +- --flake8 + -vv + + [flake8] diff --git a/pkgs/development/python-modules/docutils/default.nix b/pkgs/development/python-modules/docutils/default.nix index 292fc34e3281..529a09d3f046 100644 --- a/pkgs/development/python-modules/docutils/default.nix +++ b/pkgs/development/python-modules/docutils/default.nix @@ -3,7 +3,6 @@ , fetchPypi , buildPythonPackage , isPy3k -, isPy38 , python }: diff --git a/pkgs/development/python-modules/downloader-cli/default.nix b/pkgs/development/python-modules/downloader-cli/default.nix index 608286c8bcf6..e0c25c77e53c 100644 --- a/pkgs/development/python-modules/downloader-cli/default.nix +++ b/pkgs/development/python-modules/downloader-cli/default.nix @@ -1,4 +1,4 @@ -{ lib, buildPythonPackage, fetchFromGitHub, urllib3, pytest }: +{ lib, buildPythonPackage, fetchFromGitHub, urllib3 }: buildPythonPackage rec { pname = "downloader-cli"; diff --git a/pkgs/development/python-modules/dropbox/default.nix b/pkgs/development/python-modules/dropbox/default.nix index 3e79e40270b7..5b9301172b6d 100644 --- a/pkgs/development/python-modules/dropbox/default.nix +++ b/pkgs/development/python-modules/dropbox/default.nix @@ -1,13 +1,15 @@ -{ lib, buildPythonPackage, fetchPypi +{ lib, buildPythonPackage, fetchFromGitHub , requests, urllib3, mock, setuptools, stone }: buildPythonPackage rec { pname = "dropbox"; version = "11.22.0"; - src = fetchPypi { - inherit pname version; - sha256 = "ab84c9c78606faa0dc94cdb95c6b2bdb579beb5f34fff42091c98a1e0fbeb16c"; + src = fetchFromGitHub { + owner = "dropbox"; + repo = "dropbox-sdk-python"; + rev = "v${version}"; + sha256 = "0fhzpss3zs5x3hr4amrmw8hras75qc385ikpw0sx5a907kigk7w5"; }; postPatch = '' diff --git a/pkgs/development/python-modules/easy-thumbnails/default.nix b/pkgs/development/python-modules/easy-thumbnails/default.nix index f2be7b1903da..53913f77d2b5 100644 --- a/pkgs/development/python-modules/easy-thumbnails/default.nix +++ b/pkgs/development/python-modules/easy-thumbnails/default.nix @@ -4,7 +4,7 @@ buildPythonPackage rec { pname = "easy-thumbnails"; - version = "2.7.1"; + version = "2.7.2"; meta = { description = "Easy thumbnails for Django"; @@ -14,7 +14,7 @@ buildPythonPackage rec { src = fetchPypi { inherit pname version; - sha256 = "f862949208d9066cd3d84ffcf9c2dbe9c7344ea6152b741e440f861eca46855c"; + sha256 = "a7dd9cf97efaf70ba5d76484a962f08ba65b31f1681bc417257743650e9e8a8a"; }; propagatedBuildInputs = [ django pillow ]; diff --git a/pkgs/development/python-modules/editdistance/default.nix b/pkgs/development/python-modules/editdistance/default.nix index a831570363da..41b20ca8969f 100644 --- a/pkgs/development/python-modules/editdistance/default.nix +++ b/pkgs/development/python-modules/editdistance/default.nix @@ -13,8 +13,8 @@ buildPythonPackage rec { src = fetchFromGitHub { owner = "roy-ht"; repo = pname; - rev = version; - sha256 = "1qajskfyx2ki81ybksf0lgl1pdyw7al4ci39zrj66ylsn8fssg89"; + rev = "v${version}"; + sha256 = "17xkndwdyf14nfxk25z1qnhkzm0yxw65fpj78c01haq241zfzjr5"; }; nativeBuildInputs = [ cython ]; diff --git a/pkgs/development/python-modules/elgato/default.nix b/pkgs/development/python-modules/elgato/default.nix index 6ee0cd019128..d0c072901c35 100644 --- a/pkgs/development/python-modules/elgato/default.nix +++ b/pkgs/development/python-modules/elgato/default.nix @@ -1,26 +1,28 @@ { lib -, buildPythonPackage -, pythonOlder -, fetchFromGitHub , aiohttp -, poetry-core -, yarl , aresponses +, buildPythonPackage +, fetchFromGitHub +, poetry-core +, pydantic , pytest-asyncio , pytestCheckHook +, pythonOlder +, yarl }: buildPythonPackage rec { pname = "elgato"; - version = "2.1.1"; - disabled = pythonOlder "3.8"; + version = "2.2.0"; format = "pyproject"; + disabled = pythonOlder "3.8"; + src = fetchFromGitHub { owner = "frenck"; repo = "python-elgato"; rev = "v${version}"; - sha256 = "19z568jjyww7vi8s44anrb66qjz5l22nz4jqcz49ybhf22warmff"; + sha256 = "sha256-xsIglJSnvtd3NKqwoRAonPRN+C9KWyar0mrYcC3hPpw="; }; nativeBuildInputs = [ @@ -29,6 +31,7 @@ buildPythonPackage rec { propagatedBuildInputs = [ aiohttp + pydantic yarl ]; @@ -45,7 +48,9 @@ buildPythonPackage rec { --replace "--cov" "" ''; - pythonImportsCheck = [ "elgato" ]; + pythonImportsCheck = [ + "elgato" + ]; meta = with lib; { description = "Python client for Elgato Key Lights"; diff --git a/pkgs/development/python-modules/env-canada/default.nix b/pkgs/development/python-modules/env-canada/default.nix index 7b5f135305b6..23dbf63df691 100644 --- a/pkgs/development/python-modules/env-canada/default.nix +++ b/pkgs/development/python-modules/env-canada/default.nix @@ -13,13 +13,13 @@ buildPythonPackage rec { pname = "env-canada"; - version = "0.5.15"; + version = "0.5.16"; src = fetchFromGitHub { owner = "michaeldavie"; repo = "env_canada"; rev = "v${version}"; - sha256 = "1mgh4sbibgwzrgnlfz4ia2djlyniq7b6f9bd9f2yd1wkai32dm2a"; + sha256 = "sha256-5Cxpl5iwbBtpwQ9//yhEZNCIzBZgTm/fqAo9PNNxoG4="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/ephem/default.nix b/pkgs/development/python-modules/ephem/default.nix index 4a8085e0d72b..58c14699880e 100644 --- a/pkgs/development/python-modules/ephem/default.nix +++ b/pkgs/development/python-modules/ephem/default.nix @@ -1,7 +1,6 @@ { lib , buildPythonPackage , fetchPypi -, isPy3k , glibcLocales , pytest }: diff --git a/pkgs/development/python-modules/etelemetry/default.nix b/pkgs/development/python-modules/etelemetry/default.nix index 869c6ccba92c..ed093f182e32 100644 --- a/pkgs/development/python-modules/etelemetry/default.nix +++ b/pkgs/development/python-modules/etelemetry/default.nix @@ -1,4 +1,4 @@ -{ lib, buildPythonPackage, fetchPypi, isPy27, ci-info, ci-py, requests, pytest }: +{ lib, buildPythonPackage, fetchPypi, isPy27, ci-info, ci-py, requests }: buildPythonPackage rec { version = "0.2.1"; diff --git a/pkgs/development/python-modules/eth-hash/default.nix b/pkgs/development/python-modules/eth-hash/default.nix index 618c39f3b734..622dd0b37353 100644 --- a/pkgs/development/python-modules/eth-hash/default.nix +++ b/pkgs/development/python-modules/eth-hash/default.nix @@ -1,6 +1,5 @@ { lib, fetchPypi, buildPythonPackage, pythonOlder, pytest, pysha3, pycrypto , pycryptodome -, eth-utils }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/exchangelib/default.nix b/pkgs/development/python-modules/exchangelib/default.nix index 686a167d74bf..dba1af3d0a4f 100644 --- a/pkgs/development/python-modules/exchangelib/default.nix +++ b/pkgs/development/python-modules/exchangelib/default.nix @@ -27,14 +27,14 @@ buildPythonPackage rec { pname = "exchangelib"; - version = "4.5.2"; + version = "4.6.0"; disabled = pythonOlder "3.6"; src = fetchFromGitHub { owner = "ecederstrand"; repo = pname; rev = "v${version}"; - sha256 = "1zz4p13ww9y5x0ifvcj652hgfbjqbnmr3snwrs0p315sc3y47ggm"; + sha256 = "1lx5q3m3vhbx9xnm3v25xrrxvli1nh0lsza51ln4y3fk79ln91hv"; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/executing/default.nix b/pkgs/development/python-modules/executing/default.nix index 8ab6994ac415..1a6664df6712 100644 --- a/pkgs/development/python-modules/executing/default.nix +++ b/pkgs/development/python-modules/executing/default.nix @@ -1,19 +1,20 @@ { lib +, asttokens , buildPythonPackage , fetchFromGitHub , setuptools-scm -, asttokens }: buildPythonPackage rec { pname = "executing"; - version = "0.5.4"; + version = "0.8.2"; + format = "setuptools"; src = fetchFromGitHub { owner = "alexmojaki"; repo = pname; rev = "v${version}"; - sha256 = "1hqx94h6l2wg9sljiaajfay2nr62sqa819w3bxrz8cdki1abdygv"; + sha256 = "sha256-CDZQ9DONn7M+2/GtmM2G6nQPpI9dOd0ca+2F1PGRwO4="; }; nativeBuildInputs = [ @@ -26,7 +27,13 @@ buildPythonPackage rec { # Tests appear to run fine (Ran 22 tests in 4.076s) with setuptoolsCheckPhase # but crash with pytestCheckHook - checkInputs = [ asttokens ]; + checkInputs = [ + asttokens + ]; + + pythonImportsCheck = [ + "executing" + ]; meta = with lib; { description = "Get information about what a frame is currently doing, particularly the AST node being executed"; diff --git a/pkgs/development/python-modules/extractcode/libarchive.nix b/pkgs/development/python-modules/extractcode/libarchive.nix index 2cff60f3d811..efb314fa4c5b 100644 --- a/pkgs/development/python-modules/extractcode/libarchive.nix +++ b/pkgs/development/python-modules/extractcode/libarchive.nix @@ -10,7 +10,6 @@ , zlib , zstd , plugincode -, pytestCheckHook }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/faraday-plugins/default.nix b/pkgs/development/python-modules/faraday-plugins/default.nix index 1116ea046a42..4701e481b31a 100644 --- a/pkgs/development/python-modules/faraday-plugins/default.nix +++ b/pkgs/development/python-modules/faraday-plugins/default.nix @@ -16,13 +16,14 @@ buildPythonPackage rec { pname = "faraday-plugins"; - version = "1.5.5"; + version = "1.5.6"; + format = "setuptools"; src = fetchFromGitHub { owner = "infobyte"; repo = "faraday_plugins"; rev = "v${version}"; - sha256 = "sha256-dnd6q/L3yh/9XkrWC4ETccSO6zr31wBsuumDvwemKyA="; + sha256 = "sha256-RTHhCSOqtdPsgZgeziAYm+9NoR72Jfm+42fyyKqjFpA="; }; propagatedBuildInputs = [ @@ -53,7 +54,9 @@ buildPythonPackage rec { "test_process_report_summary" ]; - pythonImportsCheck = [ "faraday_plugins" ]; + pythonImportsCheck = [ + "faraday_plugins" + ]; meta = with lib; { description = "Security tools report parsers for Faraday"; diff --git a/pkgs/development/python-modules/fastecdsa/default.nix b/pkgs/development/python-modules/fastecdsa/default.nix index c161acdb3650..e7dbea075870 100644 --- a/pkgs/development/python-modules/fastecdsa/default.nix +++ b/pkgs/development/python-modules/fastecdsa/default.nix @@ -8,6 +8,7 @@ buildPythonPackage rec { pname = "fastecdsa"; version = "2.2.2"; + format = "setuptools"; src = fetchPypi { inherit pname version; @@ -18,10 +19,10 @@ buildPythonPackage rec { checkInputs = [ pytestCheckHook ]; - # skip tests which require being online to download test vectors - pytestFlags = [ - "--ignore=fastecdsa/tests/test_wycheproof_vectors.py" - "--ignore=fastecdsa/tests/test_rfc6979_ecdsa.py" + disabledTestPaths = [ + # skip tests which require being online to download test vectors + "fastecdsa/tests/test_wycheproof_vectors.py" + "fastecdsa/tests/test_rfc6979_ecdsa.py" ]; # skip tests for now, they fail with diff --git a/pkgs/development/python-modules/fastprogress/default.nix b/pkgs/development/python-modules/fastprogress/default.nix index 9b43c05989f6..2164bc93f622 100644 --- a/pkgs/development/python-modules/fastprogress/default.nix +++ b/pkgs/development/python-modules/fastprogress/default.nix @@ -2,7 +2,6 @@ , buildPythonPackage , fetchPypi , numpy -, pytest , pythonOlder }: diff --git a/pkgs/development/python-modules/fasttext/default.nix b/pkgs/development/python-modules/fasttext/default.nix index e478b3f9a4b6..c360c364d8b9 100644 --- a/pkgs/development/python-modules/fasttext/default.nix +++ b/pkgs/development/python-modules/fasttext/default.nix @@ -1,4 +1,4 @@ -{lib, buildPythonPackage, fetchFromGitHub, numpy, pkgs, pybind11 }: +{lib, buildPythonPackage, numpy, pkgs, pybind11 }: buildPythonPackage rec { inherit (pkgs.fasttext) pname version src; diff --git a/pkgs/development/python-modules/filelock/3.2.nix b/pkgs/development/python-modules/filelock/3.2.nix new file mode 100644 index 000000000000..3929361f7d8c --- /dev/null +++ b/pkgs/development/python-modules/filelock/3.2.nix @@ -0,0 +1,18 @@ +{ lib, buildPythonPackage, fetchPypi }: + +buildPythonPackage rec { + pname = "filelock"; + version = "3.2.1"; + + src = fetchPypi { + inherit pname version; + sha256 = "1qry67zv2pmz8px6wdfbjqv75nmryy2ac7asqgs6q6db2722kpcw"; + }; + + meta = with lib; { + homepage = "https://github.com/benediktschmitt/py-filelock"; + description = "A platform independent file lock for Python"; + license = licenses.unlicense; + maintainers = with maintainers; [ henkkalkwater ]; + }; +} diff --git a/pkgs/development/python-modules/fiona/default.nix b/pkgs/development/python-modules/fiona/default.nix index 987a8ca6209e..0c1a3bd2c651 100644 --- a/pkgs/development/python-modules/fiona/default.nix +++ b/pkgs/development/python-modules/fiona/default.nix @@ -51,6 +51,12 @@ buildPythonPackage rec { "http" "https" "wheel" # Assert not true "test_no_append_driver_cannot_append" + ] ++ lib.optionals stdenv.isAarch64 [ + # https://github.com/Toblerity/Fiona/issues/1012 the existence of this + # as a bug hasn't been challenged and other distributors seem to also + # be skipping these tests on aarch64, so this is not unique to nixpkgs. + "test_write_or_driver_error" + "test_append_or_driver_error" ]; meta = with lib; { diff --git a/pkgs/development/python-modules/fire/default.nix b/pkgs/development/python-modules/fire/default.nix index bf3be8a69072..252b180c4e06 100644 --- a/pkgs/development/python-modules/fire/default.nix +++ b/pkgs/development/python-modules/fire/default.nix @@ -1,4 +1,4 @@ -{ lib, buildPythonPackage, fetchFromGitHub, fetchpatch, six, hypothesis, mock +{ lib, buildPythonPackage, fetchFromGitHub, six, hypothesis, mock , python-Levenshtein, pytest, termcolor, isPy27, enum34 }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/flake8-debugger/default.nix b/pkgs/development/python-modules/flake8-debugger/default.nix index 46c63ec00085..67f4ea529f10 100644 --- a/pkgs/development/python-modules/flake8-debugger/default.nix +++ b/pkgs/development/python-modules/flake8-debugger/default.nix @@ -1,4 +1,4 @@ -{ lib, fetchPypi, buildPythonPackage, pythonOlder, pythonAtLeast, isPy27 +{ lib, fetchPypi, buildPythonPackage, isPy27 , flake8 , pycodestyle , six diff --git a/pkgs/development/python-modules/flake8-length/default.nix b/pkgs/development/python-modules/flake8-length/default.nix new file mode 100644 index 000000000000..7cb2f6b86c5d --- /dev/null +++ b/pkgs/development/python-modules/flake8-length/default.nix @@ -0,0 +1,37 @@ +{ lib +, buildPythonPackage +, pythonOlder +, flake8 +, pytestCheckHook +, fetchPypi +}: + +buildPythonPackage rec { + pname = "flake8-length"; + version = "0.2.0"; + disabled = pythonOlder "3.6"; + + src = fetchPypi { + inherit pname version; + sha256 = "15frvccm1qx783jlx8fw811ks9jszln3agbb58lg4dhbmjaf2cxw"; + }; + + propagatedBuildInputs = [ + flake8 + ]; + + pythonImportsCheck = [ + "flake8_length" + ]; + + checkInputs = [ pytestCheckHook ]; + + pytestFlagsArray = [ "tests/" ]; + + meta = { + description = "Flake8 plugin for a smart line length validation"; + homepage = "https://github.com/orsinium-labs/flake8-length"; + license = lib.licenses.mit; + maintainers = with lib.maintainers; [ sauyon ]; + }; +} diff --git a/pkgs/development/python-modules/flask-admin/default.nix b/pkgs/development/python-modules/flask-admin/default.nix index dc1e795054fe..bfdf0e46ea58 100644 --- a/pkgs/development/python-modules/flask-admin/default.nix +++ b/pkgs/development/python-modules/flask-admin/default.nix @@ -1,80 +1,86 @@ { lib +, arrow , buildPythonPackage +, colour +, email_validator +, enum34 , fetchPypi -, nose -, pillow +, flask +, flask_sqlalchemy +, flask-babelex +, flask-mongoengine +, geoalchemy2 +, isPy27 , mongoengine +, pillow +, psycopg2 , pymongo -, wtf-peewee +, pytestCheckHook +, shapely , sqlalchemy , sqlalchemy-citext , sqlalchemy-utils -, flask-mongoengine -, flask_sqlalchemy -, flask-babelex -, shapely -, geoalchemy2 -, psycopg2 -, arrow -, colour -, email_validator -, flask +, wtf-peewee , wtforms -, isPy27 -, enum34 }: buildPythonPackage rec { pname = "flask-admin"; - version = "1.5.6"; + version = "1.5.8"; + format = "setuptools"; src = fetchPypi { pname = "Flask-Admin"; inherit version; - sha256 = "1f31vzc0p2xni5mh1wvjk9jxf4ddlx2fj4r0f3vv2n9db3c63iv8"; + sha256 = "sha256-6wah8xuYiB3uU6VcZPrr0ZkNaqw4gmNksoDfCyZ5/3Q="; }; - checkInputs = [ - nose - pillow - mongoengine - pymongo - wtf-peewee - sqlalchemy - sqlalchemy-citext - sqlalchemy-utils - flask-mongoengine - flask_sqlalchemy - flask-babelex - shapely - geoalchemy2 - psycopg2 - arrow - colour - email_validator - ]; - propagatedBuildInputs = [ flask wtforms - ] ++ lib.optionals isPy27 [ enum34 ]; + ] ++ lib.optionals isPy27 [ + enum34 + ]; - checkPhase = '' - # disable tests that require mongodb, postresql, or network - nosetests \ - -e "mongoengine" \ - -e "pymongo" \ - -e "test_form_upload" \ - -e "test_postgres" \ - -e "geoa" \ - -e "test_ajax_fk" \ - flask_admin/tests - ''; + checkInputs = [ + arrow + colour + email_validator + flask_sqlalchemy + flask-babelex + flask-mongoengine + geoalchemy2 + mongoengine + pillow + psycopg2 + pymongo + pytestCheckHook + shapely + sqlalchemy + sqlalchemy-citext + sqlalchemy-utils + wtf-peewee + ]; + + disabledTestPaths = [ + # Tests have additional requirements + "flask_admin/tests/geoa/test_basic.py" + "flask_admin/tests/mongoengine/test_basic.py" + "flask_admin/tests/pymongo/test_basic.py" + "flask_admin/tests/sqla/test_basic.py" + "flask_admin/tests/sqla/test_form_rules.py" + "flask_admin/tests/sqla/test_postgres.py" + "flask_admin/tests/sqla/test_translation.py" + ]; + + pythonImportsCheck = [ + "flask_admin" + ]; meta = with lib; { description = "Simple and extensible admin interface framework for Flask"; homepage = "https://github.com/flask-admin/flask-admin/"; license = licenses.bsd3; - maintainers = [ maintainers.costrouc ]; + maintainers = with maintainers; [ costrouc ]; }; } diff --git a/pkgs/development/python-modules/flit-core/default.nix b/pkgs/development/python-modules/flit-core/default.nix index 7b2731595629..7cb9ed2c6c45 100644 --- a/pkgs/development/python-modules/flit-core/default.nix +++ b/pkgs/development/python-modules/flit-core/default.nix @@ -3,8 +3,6 @@ , callPackage , flit , toml -, pytestCheckHook -, testpath }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/flit/default.nix b/pkgs/development/python-modules/flit/default.nix index 38369dfd4d2f..0a6d1ba3158a 100644 --- a/pkgs/development/python-modules/flit/default.nix +++ b/pkgs/development/python-modules/flit/default.nix @@ -1,8 +1,6 @@ { lib , buildPythonPackage , fetchFromGitHub -, fetchpatch -, isPy3k , docutils , requests , requests_download diff --git a/pkgs/development/python-modules/flower/default.nix b/pkgs/development/python-modules/flower/default.nix index 0d4f834f1f0c..c7a2ba59db3e 100644 --- a/pkgs/development/python-modules/flower/default.nix +++ b/pkgs/development/python-modules/flower/default.nix @@ -13,6 +13,7 @@ buildPythonPackage rec { pname = "flower"; version = "1.0.0"; + format = "setuptools"; src = fetchPypi { inherit pname version; @@ -27,10 +28,10 @@ buildPythonPackage rec { propagatedBuildInputs = [ celery - pytz - tornado humanize prometheus-client + pytz + tornado ]; checkInputs = [ @@ -38,7 +39,15 @@ buildPythonPackage rec { pytestCheckHook ]; - pythonImportsCheck = [ "flower" ]; + disabledTests = [ + # AssertionError as the celery release can't be detected + "test_default" + "test_with_app" + ]; + + pythonImportsCheck = [ + "flower" + ]; meta = with lib; { description = "Celery Flower"; diff --git a/pkgs/development/python-modules/flux-led/default.nix b/pkgs/development/python-modules/flux-led/default.nix index d0f90da8fe4f..e39884e0ea64 100644 --- a/pkgs/development/python-modules/flux-led/default.nix +++ b/pkgs/development/python-modules/flux-led/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "flux_led"; - version = "0.24.12"; + version = "0.24.17"; disabled = pythonOlder "3.7"; @@ -16,7 +16,7 @@ buildPythonPackage rec { owner = "Danielhiversen"; repo = "flux_led"; rev = version; - sha256 = "sha256-vhmqfHAqbgDUvbn+dR7TuA5SFjF72/nhCL1h+GPy+9c="; + sha256 = "sha256-NAmODGk60Lt9OiTppYV40vvGL6g28spKRC7NxVFubxE="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/freezegun/0.3.nix b/pkgs/development/python-modules/freezegun/0.3.nix index c4444805009d..7f77616f2a4e 100644 --- a/pkgs/development/python-modules/freezegun/0.3.nix +++ b/pkgs/development/python-modules/freezegun/0.3.nix @@ -1,7 +1,6 @@ { lib , buildPythonPackage , fetchPypi -, isPy27 , python-dateutil , six , mock diff --git a/pkgs/development/python-modules/frozendict/default.nix b/pkgs/development/python-modules/frozendict/default.nix index 4e486ae6016e..b25b78e0ccc3 100644 --- a/pkgs/development/python-modules/frozendict/default.nix +++ b/pkgs/development/python-modules/frozendict/default.nix @@ -3,7 +3,6 @@ , fetchPypi , isPy3k , pytestCheckHook -, setuptoolsBuildHook , python }: diff --git a/pkgs/development/python-modules/gaphas/default.nix b/pkgs/development/python-modules/gaphas/default.nix new file mode 100644 index 000000000000..a6351aeeadd7 --- /dev/null +++ b/pkgs/development/python-modules/gaphas/default.nix @@ -0,0 +1,45 @@ +{ lib +, buildPythonPackage +, pythonOlder +, fetchPypi +, poetry-core +, gobject-introspection +, gtk3 +, pycairo +, pygobject3 +, typing-extensions +}: + +buildPythonPackage rec { + pname = "gaphas"; + version = "3.1.9"; + disabled = pythonOlder "3.7"; + + format = "pyproject"; + + src = fetchPypi { + inherit pname version; + sha256 = "sha256-S6cRsfqXYM4mSVSs2M8fET5ShFClKkGkod2w2y6F2gc="; + }; + + nativeBuildInputs = [ + poetry-core + ]; + + buildInputs = [ gobject-introspection gtk3 ]; + + propagatedBuildInputs = [ + pycairo + pygobject3 + typing-extensions + ]; + + pythonImportsCheck = [ "gaphas" ]; + + meta = with lib; { + description = "GTK+ based diagramming widget"; + maintainers = with maintainers; [ wolfangaukang ]; + homepage = "https://github.com/gaphor/gaphas"; + license = licenses.asl20; + }; +} diff --git a/pkgs/development/python-modules/gbinder-python/default.nix b/pkgs/development/python-modules/gbinder-python/default.nix index caa848a19a39..42832ff45144 100644 --- a/pkgs/development/python-modules/gbinder-python/default.nix +++ b/pkgs/development/python-modules/gbinder-python/default.nix @@ -1,5 +1,4 @@ -{ stdenv -, lib +{ lib , fetchFromGitHub , buildPythonPackage , cython diff --git a/pkgs/development/python-modules/generic/default.nix b/pkgs/development/python-modules/generic/default.nix new file mode 100644 index 000000000000..87dca630a1b8 --- /dev/null +++ b/pkgs/development/python-modules/generic/default.nix @@ -0,0 +1,32 @@ +{ lib +, buildPythonPackage +, pythonOlder +, fetchPypi +, poetry-core +}: + +buildPythonPackage rec { + pname = "generic"; + version = "1.0.1"; + disabled = pythonOlder "3.7"; + + format = "pyproject"; + + src = fetchPypi { + inherit pname version; + sha256 = "sha256-ex93I+ofo5lP6qoolZwzjxSspeqJimY3vpB32RLJ00k="; + }; + + nativeBuildInputs = [ + poetry-core + ]; + + pythonImportsCheck = [ "generic" ]; + + meta = with lib; { + description = "Generic programming (Multiple dispatch) library for Python"; + maintainers = with maintainers; [ wolfangaukang ]; + homepage = "https://github.com/gaphor/generic"; + license = licenses.bsdOriginal; + }; +} diff --git a/pkgs/development/python-modules/geopandas/default.nix b/pkgs/development/python-modules/geopandas/default.nix index 82acdbb8548e..b62b2c67ef78 100644 --- a/pkgs/development/python-modules/geopandas/default.nix +++ b/pkgs/development/python-modules/geopandas/default.nix @@ -1,32 +1,19 @@ -{ lib, stdenv, buildPythonPackage, fetchFromGitHub, fetchpatch, pythonOlder +{ lib, stdenv, buildPythonPackage, fetchFromGitHub, pythonOlder , pandas, shapely, fiona, pyproj , pytestCheckHook, Rtree }: buildPythonPackage rec { pname = "geopandas"; - version = "0.9.0"; + version = "0.10.2"; disabled = pythonOlder "3.6"; src = fetchFromGitHub { owner = "geopandas"; repo = "geopandas"; rev = "v${version}"; - sha256 = "sha256-58X562OkRzZ4UTNMTwXW4U5czoa5tbSMBCcE90DqbaE="; + sha256 = "14azl3gppqn90k8h4hpjilsivj92k6p1jh7mdr6p4grbww1b7sdq"; }; - patches = [ - (fetchpatch { - name = "skip-pandas-master-fillna-test.patch"; - url = "https://github.com/geopandas/geopandas/pull/1878.patch"; - sha256 = "1yw3i4dbhaq7f02n329b9y2cqxbwlz9db81mhgrfc7af3whwysdb"; - }) - (fetchpatch { - name = "fix-proj4strings-test.patch"; - url = "https://github.com/geopandas/geopandas/pull/1958.patch"; - sha256 = "0kzmpq5ry87yvhqr6gnh9p2606b06d3ynzjvw0hpp9fncczpc2yn"; - }) - ]; - propagatedBuildInputs = [ pandas shapely @@ -35,6 +22,10 @@ buildPythonPackage rec { ]; doCheck = !stdenv.isDarwin; + preCheck = '' + # Wants to write test files into $HOME. + export HOME="$TMPDIR" + ''; checkInputs = [ pytestCheckHook Rtree ]; disabledTests = [ # requires network access diff --git a/pkgs/development/python-modules/gevent-websocket/default.nix b/pkgs/development/python-modules/gevent-websocket/default.nix index 24af4416ab3c..5e93fb32b9e7 100644 --- a/pkgs/development/python-modules/gevent-websocket/default.nix +++ b/pkgs/development/python-modules/gevent-websocket/default.nix @@ -1,7 +1,6 @@ { lib , buildPythonPackage , fetchPypi -, isPy3k , gevent , gunicorn }: diff --git a/pkgs/development/python-modules/glcontext/default.nix b/pkgs/development/python-modules/glcontext/default.nix index c5a06fb6499a..32fdae1b3f2c 100644 --- a/pkgs/development/python-modules/glcontext/default.nix +++ b/pkgs/development/python-modules/glcontext/default.nix @@ -4,8 +4,6 @@ , isPy3k , libGL , libX11 -, pytestCheckHook -, psutil }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/glom/default.nix b/pkgs/development/python-modules/glom/default.nix index 89f0de474901..d30a0c7eb1cb 100644 --- a/pkgs/development/python-modules/glom/default.nix +++ b/pkgs/development/python-modules/glom/default.nix @@ -6,7 +6,6 @@ , face , pytest , pyyaml -, isPy37 }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/gmpy2/default.nix b/pkgs/development/python-modules/gmpy2/default.nix index 204415d75315..c4b0dbf200b3 100644 --- a/pkgs/development/python-modules/gmpy2/default.nix +++ b/pkgs/development/python-modules/gmpy2/default.nix @@ -1,7 +1,6 @@ { lib , buildPythonPackage , fetchFromGitHub -, fetchpatch , isPyPy , gmp , mpfr diff --git a/pkgs/development/python-modules/gntp/default.nix b/pkgs/development/python-modules/gntp/default.nix index cde1f9bb8ca6..364a59732e11 100644 --- a/pkgs/development/python-modules/gntp/default.nix +++ b/pkgs/development/python-modules/gntp/default.nix @@ -1,4 +1,4 @@ -{ lib, buildPythonPackage, fetchPypi, nose }: +{ lib, buildPythonPackage, fetchPypi }: buildPythonPackage rec { pname = "gntp"; diff --git a/pkgs/development/python-modules/goalzero/default.nix b/pkgs/development/python-modules/goalzero/default.nix index b2cf6e7eadaf..d21b6335a7ff 100644 --- a/pkgs/development/python-modules/goalzero/default.nix +++ b/pkgs/development/python-modules/goalzero/default.nix @@ -1,31 +1,32 @@ { lib -, buildPythonPackage -, pythonOlder -, fetchPypi , aiohttp -, ratelimit +, buildPythonPackage +, fetchPypi +, pythonOlder }: buildPythonPackage rec { pname = "goalzero"; - version = "0.2.0"; + version = "0.2.1"; + format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "6cb67cf772a758225b2e23b394feb697e8cbfb1aff5a2d7a17a0d4ccf61e55cd"; + sha256 = "sha256-PveHE317p5fGSxgx7LQkpRYF55HwdzpZFY8/F8s3CBQ="; }; propagatedBuildInputs = [ aiohttp - ratelimit ]; # no tests implemented doCheck = false; - pythonImportsCheck = [ "goalzero" ]; + pythonImportsCheck = [ + "goalzero" + ]; meta = with lib; { description = "Goal Zero Yeti REST Api Library"; diff --git a/pkgs/development/python-modules/google-api-core/default.nix b/pkgs/development/python-modules/google-api-core/default.nix index b434a92923cb..ae6f465b1bf2 100644 --- a/pkgs/development/python-modules/google-api-core/default.nix +++ b/pkgs/development/python-modules/google-api-core/default.nix @@ -8,7 +8,6 @@ , proto-plus , requests , mock -, pytest , pytest-asyncio , pytestCheckHook }: diff --git a/pkgs/development/python-modules/google-auth-httplib2/default.nix b/pkgs/development/python-modules/google-auth-httplib2/default.nix index ceaec714176f..0109175ab85c 100644 --- a/pkgs/development/python-modules/google-auth-httplib2/default.nix +++ b/pkgs/development/python-modules/google-auth-httplib2/default.nix @@ -1,5 +1,4 @@ { lib -, isPy3k , buildPythonPackage , fetchPypi , flask diff --git a/pkgs/development/python-modules/google-auth/default.nix b/pkgs/development/python-modules/google-auth/default.nix index 69cd26625093..076d1e2da4f7 100644 --- a/pkgs/development/python-modules/google-auth/default.nix +++ b/pkgs/development/python-modules/google-auth/default.nix @@ -1,7 +1,6 @@ { stdenv , lib , buildPythonPackage -, fetchpatch , fetchPypi , pytestCheckHook , cachetools diff --git a/pkgs/development/python-modules/google-cloud-appengine-logging/default.nix b/pkgs/development/python-modules/google-cloud-appengine-logging/default.nix index 97ed622f5ff6..67296f667ab2 100644 --- a/pkgs/development/python-modules/google-cloud-appengine-logging/default.nix +++ b/pkgs/development/python-modules/google-cloud-appengine-logging/default.nix @@ -7,7 +7,6 @@ , proto-plus , pytest-asyncio , pytestCheckHook -, pythonOlder }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/google-cloud-bigquery-logging/default.nix b/pkgs/development/python-modules/google-cloud-bigquery-logging/default.nix index 5d09d4fd8c71..32988e35deac 100644 --- a/pkgs/development/python-modules/google-cloud-bigquery-logging/default.nix +++ b/pkgs/development/python-modules/google-cloud-bigquery-logging/default.nix @@ -7,7 +7,6 @@ , proto-plus , pytest-asyncio , pytestCheckHook -, pythonOlder }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/google-cloud-core/default.nix b/pkgs/development/python-modules/google-cloud-core/default.nix index 657fe314b94e..ef02d0671b05 100644 --- a/pkgs/development/python-modules/google-cloud-core/default.nix +++ b/pkgs/development/python-modules/google-cloud-core/default.nix @@ -1,11 +1,8 @@ { lib , buildPythonPackage , fetchPypi -, pythonOlder , pytestCheckHook -, python , google-api-core -, grpcio , mock }: diff --git a/pkgs/development/python-modules/google-cloud-iam-logging/default.nix b/pkgs/development/python-modules/google-cloud-iam-logging/default.nix index 7b5484065922..47ca59ab2a21 100644 --- a/pkgs/development/python-modules/google-cloud-iam-logging/default.nix +++ b/pkgs/development/python-modules/google-cloud-iam-logging/default.nix @@ -7,7 +7,6 @@ , proto-plus , pytest-asyncio , pytestCheckHook -, pythonOlder }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/google-cloud-logging/default.nix b/pkgs/development/python-modules/google-cloud-logging/default.nix index 4a897327c0ff..759230a2e857 100644 --- a/pkgs/development/python-modules/google-cloud-logging/default.nix +++ b/pkgs/development/python-modules/google-cloud-logging/default.nix @@ -12,7 +12,6 @@ , proto-plus , pytestCheckHook , pytest-asyncio -, webapp2 }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/google-cloud-org-policy/default.nix b/pkgs/development/python-modules/google-cloud-org-policy/default.nix index 7ef5038e271a..c0870c97f072 100644 --- a/pkgs/development/python-modules/google-cloud-org-policy/default.nix +++ b/pkgs/development/python-modules/google-cloud-org-policy/default.nix @@ -1,4 +1,4 @@ -{ lib, buildPythonPackage, fetchPypi, pytestCheckHook, pythonOlder, google-api-core, mock, proto-plus, protobuf, pytest-asyncio }: +{ lib, buildPythonPackage, fetchPypi, pytestCheckHook, google-api-core, mock, proto-plus, protobuf, pytest-asyncio }: buildPythonPackage rec { pname = "google-cloud-org-policy"; diff --git a/pkgs/development/python-modules/google-cloud-translate/default.nix b/pkgs/development/python-modules/google-cloud-translate/default.nix index 22694071d300..c59f47e56bfc 100644 --- a/pkgs/development/python-modules/google-cloud-translate/default.nix +++ b/pkgs/development/python-modules/google-cloud-translate/default.nix @@ -5,7 +5,6 @@ , google-api-core , google-cloud-core , google-cloud-testutils -, grpcio , libcst , mock , proto-plus diff --git a/pkgs/development/python-modules/graph-tool/2.x.x.nix b/pkgs/development/python-modules/graph-tool/2.x.x.nix index 50d5f0f966b6..bcf1664b690e 100644 --- a/pkgs/development/python-modules/graph-tool/2.x.x.nix +++ b/pkgs/development/python-modules/graph-tool/2.x.x.nix @@ -2,8 +2,6 @@ , pkg-config, boost, expat, scipy, cgal, gmp, mpfr , gobject-introspection, pygobject3, gtk3, matplotlib, ncurses , buildPythonPackage -, fetchpatch -, pythonAtLeast , lib }: diff --git a/pkgs/development/python-modules/graphviz/default.nix b/pkgs/development/python-modules/graphviz/default.nix index d0483864ff85..ac5c3700bb56 100644 --- a/pkgs/development/python-modules/graphviz/default.nix +++ b/pkgs/development/python-modules/graphviz/default.nix @@ -4,6 +4,7 @@ , fetchFromGitHub , substituteAll , graphviz +, xdg-utils , makeFontsConf , freefont_ttf , mock @@ -13,7 +14,7 @@ buildPythonPackage rec { pname = "graphviz"; - version = "0.17"; + version = "0.18"; disabled = pythonOlder "3.6"; @@ -22,13 +23,14 @@ buildPythonPackage rec { owner = "xflr6"; repo = "graphviz"; rev = version; - sha256 = "sha256-K6z2C7hQH2A9bqgRR4MRqxVAH/k2NQBEelb2/6KDUr0="; + sha256 = "sha256-K98CwG+V+EFwzyawVjRwVhbX2FVfoX7dCAD5PXAWTq8="; }; patches = [ (substituteAll { - src = ./hardcode-graphviz-path.patch; + src = ./paths.patch; inherit graphviz; + xdgutils = xdg-utils; }) ]; diff --git a/pkgs/development/python-modules/graphviz/hardcode-graphviz-path.patch b/pkgs/development/python-modules/graphviz/hardcode-graphviz-path.patch deleted file mode 100644 index ba25d54e3703..000000000000 --- a/pkgs/development/python-modules/graphviz/hardcode-graphviz-path.patch +++ /dev/null @@ -1,98 +0,0 @@ -diff --git a/graphviz/backend.py b/graphviz/backend.py -index b66e616..3da4ef0 100644 ---- a/graphviz/backend.py -+++ b/graphviz/backend.py -@@ -124,7 +124,7 @@ def command(engine: str, format_: str, filepath=None, - raise ValueError(f'unknown formatter: {formatter!r}') - - output_format = [f for f in (format_, renderer, formatter) if f is not None] -- cmd = ['dot', '-K%s' % engine, '-T%s' % ':'.join(output_format)] -+ cmd = ['@graphviz@/bin/dot', '-K%s' % engine, '-T%s' % ':'.join(output_format)] - - if filepath is None: - rendered = None -@@ -297,7 +297,7 @@ def unflatten(source: str, - if fanout and stagger is None: - raise RequiredArgumentError('fanout given without stagger') - -- cmd = ['unflatten'] -+ cmd = ['@graphviz@/bin/unflatten'] - if stagger is not None: - cmd += ['-l', str(stagger)] - if fanout: -@@ -332,7 +332,7 @@ def version() -> typing.Tuple[int, ...]: - Graphviz Release version entry format: - https://gitlab.com/graphviz/graphviz/-/blob/f94e91ba819cef51a4b9dcb2d76153684d06a913/gen_version.py#L17-20 - """ -- cmd = ['dot', '-V'] -+ cmd = ['@graphviz@/bin/dot', '-V'] - out, _ = run(cmd, check=True, encoding='ascii', - stdout=subprocess.PIPE, - stderr=subprocess.STDOUT) -diff --git a/tests/test_backend.py b/tests/test_backend.py -index e0a0e1c..681f178 100644 ---- a/tests/test_backend.py -+++ b/tests/test_backend.py -@@ -54,7 +54,7 @@ def test_run_encoding_mocked(mocker, Popen, input='sp\xe4m', encoding='utf-8'): - m.decode.assert_called_once_with(encoding) - - --@pytest.mark.exe -+@pytest.mark.skip(reason='empty $PATH has no effect') - @pytest.mark.usefixtures('empty_path') - @pytest.mark.parametrize('func, args', [ - (render, ['dot', 'pdf', 'nonfilepath']), -@@ -148,7 +148,7 @@ def test_render_mocked(capsys, mocker, Popen, quiet): # noqa: N803 - - assert render('dot', 'pdf', 'nonfilepath', quiet=quiet) == 'nonfilepath.pdf' - -- Popen.assert_called_once_with(['dot', '-Kdot', '-Tpdf', '-O', 'nonfilepath'], -+ Popen.assert_called_once_with(['@graphviz@/bin/dot', '-Kdot', '-Tpdf', '-O', 'nonfilepath'], - stdout=subprocess.PIPE, - stderr=subprocess.PIPE, - cwd=None, startupinfo=mocker.ANY) -@@ -211,7 +211,7 @@ def test_pipe_pipe_invalid_data_mocked(mocker, Popen, quiet): # noqa: N803 - assert e.value.stdout is out - e.value.stdout = mocker.sentinel.new_stdout - assert e.value.stdout is mocker.sentinel.new_stdout -- Popen.assert_called_once_with(['dot', '-Kdot', '-Tpng'], -+ Popen.assert_called_once_with(['@graphviz@/bin/dot', '-Kdot', '-Tpng'], - stdin=subprocess.PIPE, - stdout=subprocess.PIPE, - stderr=subprocess.PIPE, -@@ -231,7 +231,7 @@ def test_pipe_mocked(capsys, mocker, Popen, quiet): # noqa: N803 - - assert pipe('dot', 'png', b'nongraph', quiet=quiet) == b'stdout' - -- Popen.assert_called_once_with(['dot', '-Kdot', '-Tpng'], -+ Popen.assert_called_once_with(['@graphviz@/bin/dot', '-Kdot', '-Tpng'], - stdin=subprocess.PIPE, - stdout=subprocess.PIPE, - stderr=subprocess.PIPE, -@@ -259,7 +259,7 @@ def test_unflatten_mocked(capsys, mocker, Popen): - proc.communicate.return_value = (b'nonresult', b'') - - assert unflatten('nonsource') == 'nonresult' -- Popen.assert_called_once_with(['unflatten'], -+ Popen.assert_called_once_with(['@graphviz@/bin/unflatten'], - stdin=subprocess.PIPE, - stdout=subprocess.PIPE, - stderr=subprocess.PIPE, -@@ -290,7 +290,7 @@ def test_version_parsefail_mocked(mocker, Popen): # noqa: N803 - with pytest.raises(RuntimeError, match=r'nonversioninfo'): - version() - -- Popen.assert_called_once_with(['dot', '-V'], -+ Popen.assert_called_once_with(['@graphviz@/bin/dot', '-V'], - stdout=subprocess.PIPE, - stderr=subprocess.STDOUT, - startupinfo=mocker.ANY) -@@ -312,7 +312,7 @@ def test_version_mocked(mocker, Popen, stdout, expected): # noqa: N803 - - assert version() == expected - -- Popen.assert_called_once_with(['dot', '-V'], -+ Popen.assert_called_once_with(['@graphviz@/bin/dot', '-V'], - stdout=subprocess.PIPE, - stderr=subprocess.STDOUT, - startupinfo=mocker.ANY) diff --git a/pkgs/development/python-modules/graphviz/paths.patch b/pkgs/development/python-modules/graphviz/paths.patch new file mode 100644 index 000000000000..2808cb0bdb48 --- /dev/null +++ b/pkgs/development/python-modules/graphviz/paths.patch @@ -0,0 +1,89 @@ +diff --git a/graphviz/backend/dot_command.py b/graphviz/backend/dot_command.py +index d1903e6..6470d11 100644 +--- a/graphviz/backend/dot_command.py ++++ b/graphviz/backend/dot_command.py +@@ -10,7 +10,7 @@ from . import parameters + __all__ = ['command'] + + #: :class:`pathlib.Path` of layout command (``Path('dot')``). +-DOT_BINARY = pathlib.Path('dot') ++DOT_BINARY = pathlib.Path('@graphviz@/bin/dot') + + + def command(engine: str, format_: str, *, +diff --git a/graphviz/backend/unflattening.py b/graphviz/backend/unflattening.py +index 5ed25d6..8d2faf8 100644 +--- a/graphviz/backend/unflattening.py ++++ b/graphviz/backend/unflattening.py +@@ -11,7 +11,7 @@ from . import execute + __all__ = ['unflatten'] + + #: :class:`pathlib.Path` of unflatten command (``Path('unflatten')``). +-UNFLATTEN_BINARY = pathlib.Path('unflatten') ++UNFLATTEN_BINARY = pathlib.Path('@graphviz@/bin/unflatten') + + + def unflatten(source: str, +diff --git a/graphviz/backend/viewing.py b/graphviz/backend/viewing.py +index 6d4a4d1..2cc6cd8 100644 +--- a/graphviz/backend/viewing.py ++++ b/graphviz/backend/viewing.py +@@ -54,7 +54,7 @@ def view_darwin(filepath, *, quiet: bool) -> None: + @tools.attach(view, 'freebsd') + def view_unixoid(filepath, *, quiet: bool) -> None: + """Open filepath in the user's preferred application (linux, freebsd).""" +- cmd = ['xdg-open', filepath] ++ cmd = ['@xdgutils@/bin/xdg-open', filepath] + log.debug('view: %r', cmd) + kwargs = {'stderr': subprocess.DEVNULL} if quiet else {} + subprocess.Popen(cmd, **kwargs) +diff --git a/tests/_common.py b/tests/_common.py +index ab93461..7eaca89 100644 +--- a/tests/_common.py ++++ b/tests/_common.py +@@ -10,7 +10,7 @@ __all__ = ['EXPECTED_DOT_BINARY', 'EXPECTED_DEFAULT_ENCODING', + 'as_cwd', + 'check_startupinfo', 'StartupinfoMatcher'] + +-EXPECTED_DOT_BINARY = pathlib.Path('dot') ++EXPECTED_DOT_BINARY = pathlib.Path('@graphviz@/bin/dot') + + EXPECTED_DEFAULT_ENCODING = 'utf-8' + +diff --git a/tests/backend/test_execute.py b/tests/backend/test_execute.py +index 05d6525..78484cb 100644 +--- a/tests/backend/test_execute.py ++++ b/tests/backend/test_execute.py +@@ -57,6 +57,7 @@ def test_run_check_input_lines_mocked(mocker, sentinel, mock_popen, + mock_sys_stderr.flush.assert_called_once_with() + + ++@pytest.mark.skip(reason='empty $PATH has no effect') + @pytest.mark.usefixtures('empty_path') + @pytest.mark.parametrize( + 'func, args', +diff --git a/tests/backend/test_unflattening.py b/tests/backend/test_unflattening.py +index 033a4d2..7d52689 100644 +--- a/tests/backend/test_unflattening.py ++++ b/tests/backend/test_unflattening.py +@@ -8,7 +8,7 @@ import graphviz + + import _common + +-EXPECTED_UNFLATTEN_BINARY = pathlib.Path('unflatten') ++EXPECTED_UNFLATTEN_BINARY = pathlib.Path('@graphviz@/bin/unflatten') + + + @pytest.mark.exe +diff --git a/tests/backend/test_viewing.py b/tests/backend/test_viewing.py +index f5acddb..6b34884 100644 +--- a/tests/backend/test_viewing.py ++++ b/tests/backend/test_viewing.py +@@ -25,6 +25,6 @@ def test_view(mocker, mock_platform, mock_popen, mock_startfile, quiet): + if mock_platform == 'darwin': + mock_popen.assert_called_once_with(['open', 'nonfilepath'], **kwargs) + elif mock_platform in ('linux', 'freebsd'): +- mock_popen.assert_called_once_with(['xdg-open', 'nonfilepath'], **kwargs) ++ mock_popen.assert_called_once_with(['@xdgutils@/bin/xdg-open', 'nonfilepath'], **kwargs) + else: + raise RuntimeError diff --git a/pkgs/development/python-modules/greeclimate/default.nix b/pkgs/development/python-modules/greeclimate/default.nix index 78e02521f9e6..9e5b657d4219 100644 --- a/pkgs/development/python-modules/greeclimate/default.nix +++ b/pkgs/development/python-modules/greeclimate/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "greeclimate"; - version = "0.12.1"; + version = "0.12.3"; disabled = pythonOlder "3.6"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "cmroche"; repo = "greeclimate"; rev = version; - sha256 = "sha256-HO+JBlyRFkwijR3g75P7yOabK3LhNFFYevSn/aFStUE="; + sha256 = "sha256-7O21/eL/CcQmENJTGKfZCHjZcRN3pwuWZrmMMX3YPAg="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/greenlet/default.nix b/pkgs/development/python-modules/greenlet/default.nix index 6f42eeefa9f4..78ac1668b6f8 100644 --- a/pkgs/development/python-modules/greenlet/default.nix +++ b/pkgs/development/python-modules/greenlet/default.nix @@ -1,7 +1,6 @@ { lib , buildPythonPackage , fetchPypi -, six , isPyPy , python }: diff --git a/pkgs/development/python-modules/gviz-api/default.nix b/pkgs/development/python-modules/gviz-api/default.nix index 92f33abb594a..3ec69d686952 100644 --- a/pkgs/development/python-modules/gviz-api/default.nix +++ b/pkgs/development/python-modules/gviz-api/default.nix @@ -18,7 +18,7 @@ buildPythonPackage rec { meta = with lib; { description = "Python API for Google Visualization"; - homepage = https://developers.google.com/chart/interactive/docs/dev/gviz_api_lib; + homepage = "https://developers.google.com/chart/interactive/docs/dev/gviz_api_lib"; license = licenses.asl20; maintainers = with maintainers; [ ndl ]; }; diff --git a/pkgs/development/python-modules/gyp/default.nix b/pkgs/development/python-modules/gyp/default.nix index 5be56c81257a..e98d844a33e3 100644 --- a/pkgs/development/python-modules/gyp/default.nix +++ b/pkgs/development/python-modules/gyp/default.nix @@ -1,7 +1,6 @@ { lib, stdenv , buildPythonPackage , fetchFromGitiles -, isPy3k }: buildPythonPackage { diff --git a/pkgs/development/python-modules/h5py/default.nix b/pkgs/development/python-modules/h5py/default.nix index dfa4288e54fc..e555a41cfb0a 100644 --- a/pkgs/development/python-modules/h5py/default.nix +++ b/pkgs/development/python-modules/h5py/default.nix @@ -1,5 +1,5 @@ -{ lib, fetchPypi, isPy27, python, buildPythonPackage, pythonOlder -, numpy, hdf5, cython, six, pkgconfig, unittest2, fetchpatch +{ lib, fetchPypi, isPy27, buildPythonPackage, pythonOlder +, numpy, hdf5, cython, six, pkgconfig, unittest2 , mpi4py ? null, openssh, pytestCheckHook, cached-property }: assert hdf5.mpiSupport -> mpi4py != null && hdf5.mpi == mpi4py.mpi; diff --git a/pkgs/development/python-modules/ha-av/default.nix b/pkgs/development/python-modules/ha-av/default.nix new file mode 100644 index 000000000000..af5f5f31ab61 --- /dev/null +++ b/pkgs/development/python-modules/ha-av/default.nix @@ -0,0 +1,43 @@ +{ lib +, buildPythonPackage +, pythonOlder +, fetchPypi +, pkg-config +, ffmpeg +}: + +buildPythonPackage rec { + pname = "ha-av"; + version = "8.0.4rc1"; + format = "setuptools"; + + disabled = pythonOlder "3.5"; + + src = fetchPypi { + inherit pname version; + sha256 = "sha256-txdi2/X6upqrACeHhHpEh4tGqgPpW/dyWda8y++7c3M="; + }; + + nativeBuildInputs = [ + pkg-config + ]; + + buildInputs = [ + ffmpeg + ]; + + pythonImportsCheck = [ + "av" + "av._core" + ]; + + # tests fail to import av._core + doCheck = false; + + meta = with lib; { + homepage = "https://pypi.org/project/ha-av/"; + description = "Pythonic bindings for FFmpeg's libraries"; + license = licenses.bsd3; + maintainers = with maintainers; [ hexa ]; + }; +} diff --git a/pkgs/development/python-modules/hacking/default.nix b/pkgs/development/python-modules/hacking/default.nix index 2c345691216d..d47449c2ca5e 100644 --- a/pkgs/development/python-modules/hacking/default.nix +++ b/pkgs/development/python-modules/hacking/default.nix @@ -4,9 +4,7 @@ , pbr , flake8 , stestr -, eventlet , ddt -, testtools , testscenarios }: diff --git a/pkgs/development/python-modules/halo/default.nix b/pkgs/development/python-modules/halo/default.nix index e167371b42a4..bd1d5f726363 100644 --- a/pkgs/development/python-modules/halo/default.nix +++ b/pkgs/development/python-modules/halo/default.nix @@ -4,7 +4,6 @@ , isPy27 , lib , log-symbols -, pytestCheckHook , six , spinners , termcolor }: diff --git a/pkgs/development/python-modules/hbmqtt/default.nix b/pkgs/development/python-modules/hbmqtt/default.nix deleted file mode 100644 index 37a4762bfc13..000000000000 --- a/pkgs/development/python-modules/hbmqtt/default.nix +++ /dev/null @@ -1,41 +0,0 @@ -{ lib, buildPythonPackage, fetchPypi, isPy3k, pythonAtLeast, setuptools -, transitions, websockets, passlib, docopt, pyyaml, nose }: - -buildPythonPackage rec { - pname = "hbmqtt"; - version = "0.9.6"; - - # https://github.com/beerfactory/hbmqtt/issues/223 - disabled = !isPy3k || pythonAtLeast "3.9"; - - src = fetchPypi { - inherit pname version; - sha256 = "1n9c8yj11npiq9qxivwmfhib1qkjpcyw42a7q0w641bdrz3x6r37"; - }; - - propagatedBuildInputs = [ - transitions websockets passlib docopt pyyaml setuptools - ]; - - postPatch = '' - # https://github.com/beerfactory/hbmqtt/pull/241 - substituteInPlace hbmqtt/adapters.py \ - --replace "websockets.protocol" "websockets.legacy.protocol" - - # test tries to bind same port multiple times and fails - rm tests/test_client.py - ''; - - checkInputs = [ nose ]; - - checkPhase = '' - nosetests -e test_connect_tcp - ''; - - meta = with lib; { - homepage = "https://github.com/beerfactory/hbmqtt"; - description = "MQTT client/broker using Python asynchronous I/O"; - license = licenses.mit; - maintainers = with maintainers; [ dotlambda ]; - }; -} diff --git a/pkgs/development/python-modules/headerparser/default.nix b/pkgs/development/python-modules/headerparser/default.nix index 3ad265c217f7..b1a38170162b 100644 --- a/pkgs/development/python-modules/headerparser/default.nix +++ b/pkgs/development/python-modules/headerparser/default.nix @@ -1,7 +1,6 @@ { lib , buildPythonPackage , fetchPypi -, entry-points-txt , six }: diff --git a/pkgs/development/python-modules/hid/default.nix b/pkgs/development/python-modules/hid/default.nix index 8dc134c61c0f..ce6e1d58def3 100644 --- a/pkgs/development/python-modules/hid/default.nix +++ b/pkgs/development/python-modules/hid/default.nix @@ -1,5 +1,4 @@ { lib -, stdenv , buildPythonPackage , fetchPypi , hidapi diff --git a/pkgs/development/python-modules/holidays/default.nix b/pkgs/development/python-modules/holidays/default.nix index 7ac02fa05ac9..10d333301641 100644 --- a/pkgs/development/python-modules/holidays/default.nix +++ b/pkgs/development/python-modules/holidays/default.nix @@ -7,17 +7,18 @@ , korean-lunar-calendar , pytestCheckHook , pythonOlder -, six }: buildPythonPackage rec { pname = "holidays"; version = "0.11.3.1"; + format = "setuptools"; + disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "4855afe0ebf428efbcf848477828b889f8515be7f4f15ae26682919369d92774"; + sha256 = "sha256-SFWv4Ov0KO+8+EhHeCi4ifhRW+f08VriZoKRk2nZJ3Q="; }; propagatedBuildInputs = [ @@ -25,18 +26,19 @@ buildPythonPackage rec { python-dateutil hijri-converter korean-lunar-calendar - six ]; checkInputs = [ pytestCheckHook ]; - pythonImportsCheck = [ "holidays" ]; + pythonImportsCheck = [ + "holidays" + ]; meta = with lib; { - homepage = "https://github.com/dr-prodigy/python-holidays"; description = "Generate and work with holidays in Python"; + homepage = "https://github.com/dr-prodigy/python-holidays"; license = licenses.mit; maintainers = with maintainers; [ jluttine ]; }; diff --git a/pkgs/development/python-modules/httpretty/default.nix b/pkgs/development/python-modules/httpretty/default.nix index 78a529666139..67ece594071c 100644 --- a/pkgs/development/python-modules/httpretty/default.nix +++ b/pkgs/development/python-modules/httpretty/default.nix @@ -12,7 +12,6 @@ , nose-randomly , six , mock -, eventlet , pytest , freezegun }: diff --git a/pkgs/development/python-modules/huawei-lte-api/default.nix b/pkgs/development/python-modules/huawei-lte-api/default.nix index 44cbfd4f0e0a..2b0fb912387a 100644 --- a/pkgs/development/python-modules/huawei-lte-api/default.nix +++ b/pkgs/development/python-modules/huawei-lte-api/default.nix @@ -2,15 +2,15 @@ , buildPythonPackage , pythonOlder , fetchFromGitHub -, dicttoxml +, pycryptodomex +, pytestCheckHook , requests , xmltodict -, pytestCheckHook }: buildPythonPackage rec { pname = "huawei-lte-api"; - version = "1.4.18"; + version = "1.5.2"; disabled = pythonOlder "3.4"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "Salamek"; repo = "huawei-lte-api"; rev = version; - sha256 = "1qaqxmh03j10wa9wqbwgc5r3ays8wfr7bldvsm45fycr3qfyn5fg"; + sha256 = "sha256-xG0QTvjYW0/C/7NNhl/d024TSAe0TzgMknOXvNxrPOY="; }; postPatch = '' @@ -27,7 +27,7 @@ buildPythonPackage rec { ''; propagatedBuildInputs = [ - dicttoxml + pycryptodomex requests xmltodict ]; diff --git a/pkgs/development/python-modules/hug/default.nix b/pkgs/development/python-modules/hug/default.nix index 872798c6ced8..f19c7a9dd39f 100644 --- a/pkgs/development/python-modules/hug/default.nix +++ b/pkgs/development/python-modules/hug/default.nix @@ -47,6 +47,7 @@ buildPythonPackage rec { description = "A Python framework that makes developing APIs as simple as possible, but no simpler"; homepage = "https://github.com/hugapi/hug"; license = licenses.mit; + # Missing support for later falcon releases + broken = true; }; - } diff --git a/pkgs/development/python-modules/hydra-check/default.nix b/pkgs/development/python-modules/hydra-check/default.nix index c01876d3f64c..458363713db2 100644 --- a/pkgs/development/python-modules/hydra-check/default.nix +++ b/pkgs/development/python-modules/hydra-check/default.nix @@ -5,9 +5,7 @@ , docopt , requests , beautifulsoup4 -, black , mypy -, flake8 }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/hydrawiser/default.nix b/pkgs/development/python-modules/hydrawiser/default.nix index feccc73707c2..3dfeff72609f 100644 --- a/pkgs/development/python-modules/hydrawiser/default.nix +++ b/pkgs/development/python-modules/hydrawiser/default.nix @@ -5,7 +5,6 @@ , pytest-cov , pytestCheckHook , pythonOlder -, pyyaml , requests , requests-mock }: diff --git a/pkgs/development/python-modules/i3ipc/default.nix b/pkgs/development/python-modules/i3ipc/default.nix index 37d5ccd8786f..3805d501305b 100644 --- a/pkgs/development/python-modules/i3ipc/default.nix +++ b/pkgs/development/python-modules/i3ipc/default.nix @@ -1,5 +1,5 @@ { lib, buildPythonPackage, fetchFromGitHub -, xorgserver, pytest, pytest-xvfb, i3, python, xlib, xdpyinfo +, xorgserver, pytest, pytest-xvfb, i3, xlib, xdpyinfo , makeFontsConf, coreutils }: diff --git a/pkgs/development/python-modules/icalendar/default.nix b/pkgs/development/python-modules/icalendar/default.nix index 289099dbb0e9..1e7200cffe46 100644 --- a/pkgs/development/python-modules/icalendar/default.nix +++ b/pkgs/development/python-modules/icalendar/default.nix @@ -7,12 +7,12 @@ }: buildPythonPackage rec { - version = "4.0.8"; + version = "4.0.9"; pname = "icalendar"; src = fetchPypi { inherit pname version; - sha256 = "7508a92b4e36049777640b0ae393e7219a16488d852841a0e57b44fe51d9f848"; + sha256 = "cc73fa9c848744843046228cb66ea86cd8c18d73a51b140f7c003f760b84a997"; }; buildInputs = [ setuptools ]; diff --git a/pkgs/development/python-modules/identify/default.nix b/pkgs/development/python-modules/identify/default.nix index f11abb0c13be..926f84798ad0 100644 --- a/pkgs/development/python-modules/identify/default.nix +++ b/pkgs/development/python-modules/identify/default.nix @@ -7,14 +7,14 @@ buildPythonPackage rec { pname = "identify"; - version = "2.3.1"; + version = "2.3.5"; src = fetchFromGitHub { owner = "pre-commit"; repo = pname; rev = "v${version}"; - sha256 = "sha256-6sErta+YnaXe7lHR3kR7UAoWuaw8He7e3gCML9vWYj8="; + sha256 = "sha256-XEwZ6OUEocE4dSDLCLagKqmJruvb9beC0u93SScrOho="; }; checkInputs = [ diff --git a/pkgs/development/python-modules/ifcopenshell/default.nix b/pkgs/development/python-modules/ifcopenshell/default.nix index 33816631584e..2c51ff2db4f1 100644 --- a/pkgs/development/python-modules/ifcopenshell/default.nix +++ b/pkgs/development/python-modules/ifcopenshell/default.nix @@ -1,7 +1,6 @@ { lib, stdenv , buildPythonPackage , fetchFromGitHub -, python , gcc10 , cmake , boost17x @@ -53,7 +52,7 @@ buildPythonPackage rec { meta = with lib; { description = "Open source IFC library and geometry engine"; - homepage = http://ifcopenshell.org/; + homepage = "http://ifcopenshell.org/"; license = licenses.lgpl3; maintainers = with maintainers; [ fehnomenal ]; }; diff --git a/pkgs/development/python-modules/imgaug/default.nix b/pkgs/development/python-modules/imgaug/default.nix index ab3cdd6e6d06..50faf89d600a 100644 --- a/pkgs/development/python-modules/imgaug/default.nix +++ b/pkgs/development/python-modules/imgaug/default.nix @@ -59,6 +59,9 @@ buildPythonPackage rec { "test_alpha_is_080" "test_face_and_lines_at_half_visibility" "test_polygon_fully_inside_image__no_rectangular_shape" + # flaky due to timing-based assertions + "test_imap_batches_output_buffer_size" + "test_imap_batches_unordered_output_buffer_size" ]; disabledTestPaths = [ diff --git a/pkgs/development/python-modules/importlib-metadata/2.nix b/pkgs/development/python-modules/importlib-metadata/2.nix index 71dcd950db2c..f50b2c07c1da 100644 --- a/pkgs/development/python-modules/importlib-metadata/2.nix +++ b/pkgs/development/python-modules/importlib-metadata/2.nix @@ -7,8 +7,6 @@ , contextlib2 , configparser , isPy3k -, importlib-resources -, packaging }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/inotify/default.nix b/pkgs/development/python-modules/inotify/default.nix new file mode 100644 index 000000000000..3590f53e1ecd --- /dev/null +++ b/pkgs/development/python-modules/inotify/default.nix @@ -0,0 +1,32 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, nose +}: + +buildPythonPackage rec { + pname = "inotify"; + version = "unstable-2020-08-27"; + + src = fetchFromGitHub { + owner = "dsoprea"; + repo = "PyInotify"; + rev = "f77596ae965e47124f38d7bd6587365924dcd8f7"; + sha256 = "X0gu4s1R/Kg+tmf6s8SdZBab2HisJl4FxfdwKktubVc="; + fetchSubmodules = false; + }; + + checkInputs = [ + nose + ]; + + # dunno what's wrong but the module works regardless + doCheck = false; + + meta = with lib; { + homepage = "https://github.com/dsoprea/PyInotify"; + description = "Monitor filesystems events on Linux platforms with inotify"; + license = licenses.gpl2; + platforms = platforms.linux; + }; +} diff --git a/pkgs/development/python-modules/intake-parquet/default.nix b/pkgs/development/python-modules/intake-parquet/default.nix index 49d5e1ed4b93..5c5f598a4526 100644 --- a/pkgs/development/python-modules/intake-parquet/default.nix +++ b/pkgs/development/python-modules/intake-parquet/default.nix @@ -1,7 +1,6 @@ { lib , buildPythonPackage , fetchFromGitHub -, pythonOlder , pandas , dask , fastparquet diff --git a/pkgs/development/python-modules/ipykernel/default.nix b/pkgs/development/python-modules/ipykernel/default.nix index 1c8ce638359a..dd84c0e65389 100644 --- a/pkgs/development/python-modules/ipykernel/default.nix +++ b/pkgs/development/python-modules/ipykernel/default.nix @@ -1,5 +1,4 @@ { lib -, stdenv , buildPythonPackage , callPackage , fetchPypi @@ -8,7 +7,6 @@ , jupyter-client , tornado , traitlets -, pythonOlder }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/ipython/7.16.nix b/pkgs/development/python-modules/ipython/7.16.nix index d0ca5eef7cde..1f62cc9bc18d 100644 --- a/pkgs/development/python-modules/ipython/7.16.nix +++ b/pkgs/development/python-modules/ipython/7.16.nix @@ -17,7 +17,6 @@ , pexpect , appnope , backcall -, fetchpatch }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/ipython/default.nix b/pkgs/development/python-modules/ipython/default.nix index b8a13eb436c0..7b844228225b 100644 --- a/pkgs/development/python-modules/ipython/default.nix +++ b/pkgs/development/python-modules/ipython/default.nix @@ -18,7 +18,6 @@ , pexpect , appnope , backcall -, fetchpatch }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/ircstates/default.nix b/pkgs/development/python-modules/ircstates/default.nix index c2813d828daa..49ddb8c0614e 100644 --- a/pkgs/development/python-modules/ircstates/default.nix +++ b/pkgs/development/python-modules/ircstates/default.nix @@ -1,7 +1,6 @@ { lib , buildPythonPackage , fetchFromGitHub -, fetchpatch , pythonOlder , irctokens , pendulum diff --git a/pkgs/development/python-modules/iso3166/default.nix b/pkgs/development/python-modules/iso3166/default.nix index c03acde33118..2820ff7dd6c1 100644 --- a/pkgs/development/python-modules/iso3166/default.nix +++ b/pkgs/development/python-modules/iso3166/default.nix @@ -16,7 +16,7 @@ buildPythonPackage rec { owner = "deactivated"; repo = "python-iso3166"; rev = version; - sha256 = "0zs9za9dr2nl5srxir08yibmp6nffcapmzala0fgh8ny7y6rafrx"; + sha256 = "sha256-/y7c2qSA6+WKUP9YTSaMBjBxtqAuF4nB3MKvL5P6vL0="; }; checkInputs = [ diff --git a/pkgs/development/python-modules/jaeger-client/default.nix b/pkgs/development/python-modules/jaeger-client/default.nix index 4a7a49052ca1..a601fd9ce799 100644 --- a/pkgs/development/python-modules/jaeger-client/default.nix +++ b/pkgs/development/python-modules/jaeger-client/default.nix @@ -9,11 +9,11 @@ buildPythonPackage rec { pname = "jaeger-client"; - version = "4.6.1"; + version = "4.8.0"; src = fetchPypi { inherit pname version; - sha256 = "3bc27ad77e035efd0899f377a15f180467fec44b2afbf5be0660cc888a2a4ac3"; + sha256 = "3157836edab8e2c209bd2d6ae61113db36f7ee399e66b1dcbb715d87ab49bfe0"; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/jax/default.nix b/pkgs/development/python-modules/jax/default.nix index e1d21af094f9..ce9a7758bc61 100644 --- a/pkgs/development/python-modules/jax/default.nix +++ b/pkgs/development/python-modules/jax/default.nix @@ -1,39 +1,64 @@ -{ buildPythonPackage, fetchFromGitHub, lib -# propagatedBuildInputs -, absl-py, numpy, opt-einsum -# checkInputs -, jaxlib, pytestCheckHook +{ lib +, absl-py +, buildPythonPackage +, fetchFromGitHub +, jaxlib +, numpy +, opt-einsum +, pytestCheckHook +, pythonOlder +, scipy +, typing-extensions }: buildPythonPackage rec { pname = "jax"; - version = "0.2.21"; + version = "0.2.24"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; - # Fetching from pypi doesn't allow us to run the test suite. See https://discourse.nixos.org/t/pythonremovetestsdir-hook-being-run-before-checkphase/14612/3. src = fetchFromGitHub { owner = "google"; repo = pname; rev = "jax-v${version}"; - sha256 = "05w157h6jv20k8w2gnmlxbycmzf24lr5v392q0c5v0qcql11q7pn"; + sha256 = "1mmn1m4mprpwqlb1smjfdy3f74zm9p3l9dhhn25x6jrcj2cgc5pi"; }; # jaxlib is _not_ included in propagatedBuildInputs because there are # different versions of jaxlib depending on the desired target hardware. The # JAX project ships separate wheels for CPU, GPU, and TPU. Currently only the # CPU wheel is packaged. - propagatedBuildInputs = [ absl-py numpy opt-einsum ]; + propagatedBuildInputs = [ + absl-py + numpy + opt-einsum + scipy + typing-extensions + ]; + + checkInputs = [ + jaxlib + pytestCheckHook + ]; - checkInputs = [ jaxlib pytestCheckHook ]; # NOTE: Don't run the tests in the expiremental directory as they require flax # which creates a circular dependency. See https://discourse.nixos.org/t/how-to-nix-ify-python-packages-with-circular-dependencies/14648/2. # Not a big deal, this is how the JAX docs suggest running the test suite # anyhow. - pytestFlagsArray = [ "-W ignore::DeprecationWarning" "tests/" ]; + pytestFlagsArray = [ + "-W ignore::DeprecationWarning" + "tests/" + ]; + + pythonImportsCheck = [ + "jax" + ]; meta = with lib; { description = "Differentiate, compile, and transform Numpy code"; - homepage = "https://github.com/google/jax"; - license = licenses.asl20; + homepage = "https://github.com/google/jax"; + license = licenses.asl20; maintainers = with maintainers; [ samuela ]; }; } diff --git a/pkgs/development/python-modules/jaxlib/default.nix b/pkgs/development/python-modules/jaxlib/default.nix index 7761c0372994..f597eeacfced 100644 --- a/pkgs/development/python-modules/jaxlib/default.nix +++ b/pkgs/development/python-modules/jaxlib/default.nix @@ -13,7 +13,7 @@ # * https://github.com/google/jax/issues/971#issuecomment-508216439 # * https://github.com/google/jax/issues/5723#issuecomment-913038780 -{ addOpenGLRunpath, autoPatchelfHook, buildPythonPackage, config, fetchPypi +{ addOpenGLRunpath, autoPatchelfHook, buildPythonPackage, config , fetchurl, isPy39, lib, stdenv # propagatedBuildInputs , absl-py, flatbuffers, scipy, cudatoolkit_11 diff --git a/pkgs/development/python-modules/jedi-language-server/default.nix b/pkgs/development/python-modules/jedi-language-server/default.nix new file mode 100644 index 000000000000..8aead2738f40 --- /dev/null +++ b/pkgs/development/python-modules/jedi-language-server/default.nix @@ -0,0 +1,56 @@ +{ lib +, buildPythonPackage +, fetchPypi +, fetchFromGitHub +, poetry +, docstring-to-markdown +, jedi +, pygls +, pytestCheckHook +, pyhamcrest +, python-jsonrpc-server +}: + +buildPythonPackage rec { + pname = "jedi-language-server"; + version = "0.34.8"; + format = "pyproject"; + + src = fetchFromGitHub { + owner = "pappasam"; + repo = pname; + rev = "v${version}"; + sha256 = "sha256-mJGgDDjPZXde4M4OHwj81KYoaFXFAwOZ+v18YE+arFE="; + }; + + nativeBuildInputs = [ + poetry + ]; + + propagatedBuildInputs = [ + docstring-to-markdown + jedi + pygls + ]; + + checkInputs = [ + pytestCheckHook + pyhamcrest + python-jsonrpc-server + ]; + + preCheck = '' + HOME="$(mktemp -d)" + ''; + + pythonImportsCheck = [ + "jedi_language_server" + ]; + + meta = with lib; { + homepage = "https://github.com/pappasam/jedi-language-server"; + description = "A Language Server for the latest version(s) of Jedi"; + license = licenses.mit; + maintainers = with maintainers; [ doronbehar ]; + }; +} diff --git a/pkgs/development/python-modules/jedi/default.nix b/pkgs/development/python-modules/jedi/default.nix index 814c8acbf91f..ad94a3a3f7bc 100644 --- a/pkgs/development/python-modules/jedi/default.nix +++ b/pkgs/development/python-modules/jedi/default.nix @@ -3,7 +3,6 @@ , buildPythonPackage , pythonOlder , fetchFromGitHub -, fetchPypi , colorama , django , docopt diff --git a/pkgs/development/python-modules/jellyfish/default.nix b/pkgs/development/python-modules/jellyfish/default.nix index 436aad07bf8c..546e56f702f6 100644 --- a/pkgs/development/python-modules/jellyfish/default.nix +++ b/pkgs/development/python-modules/jellyfish/default.nix @@ -8,13 +8,13 @@ buildPythonPackage rec { pname = "jellyfish"; - version = "0.8.8"; + version = "0.8.9"; disabled = !isPy3k; src = fetchPypi { inherit pname version; - sha256 = "0506089cacf9b5897442134417b04b3c6610c19f280ae535eace390dc6325a5c"; + sha256 = "90d25e8f5971ebbcf56f216ff5bb65d6466572b78908c88c47ab588d4ea436c2"; }; checkInputs = [ pytest unicodecsv ]; diff --git a/pkgs/development/python-modules/jenkins-job-builder/default.nix b/pkgs/development/python-modules/jenkins-job-builder/default.nix index 5b3f68272fa2..f2b014ff5240 100644 --- a/pkgs/development/python-modules/jenkins-job-builder/default.nix +++ b/pkgs/development/python-modules/jenkins-job-builder/default.nix @@ -1,5 +1,4 @@ -{ lib, buildPythonPackage, fetchPypi, isPy27 -, fasteners +{ lib, buildPythonPackage, fetchPypi, fasteners , jinja2 , pbr , python-jenkins diff --git a/pkgs/development/python-modules/json-schema-for-humans/default.nix b/pkgs/development/python-modules/json-schema-for-humans/default.nix index 8df7d6f6e00f..9e6144a8ec26 100644 --- a/pkgs/development/python-modules/json-schema-for-humans/default.nix +++ b/pkgs/development/python-modules/json-schema-for-humans/default.nix @@ -2,14 +2,16 @@ , beautifulsoup4 , buildPythonPackage , click +, dataclasses , dataclasses-json , fetchFromGitHub , htmlmin , jinja2 , markdown2 -, pbr +, poetry-core , pygments , pytestCheckHook +, pythonOlder , pytz , pyyaml , requests @@ -17,16 +19,21 @@ buildPythonPackage rec { pname = "json-schema-for-humans"; - version = "0.31.0"; + version = "0.39.1"; + format = "pyproject"; + + disabled = pythonOlder "3.6"; src = fetchFromGitHub { owner = "coveooss"; repo = pname; rev = "v${version}"; - sha256 = "1aj1w0qxdw8d6mf5vngk0xjgs7z8vzwc2aycahnkqg7q3cagq19n"; + sha256 = "sha256-JoD4XEfIUsAbITWa0LMYgNP6WzrblI4HUIgLpx5gn18="; }; - nativeBuildInputs = [ pbr ]; + nativeBuildInputs = [ + poetry-core + ]; propagatedBuildInputs = [ click @@ -38,12 +45,10 @@ buildPythonPackage rec { pytz pyyaml requests + ] ++ lib.optionals (pythonOlder "3.7") [ + dataclasses ]; - preBuild = '' - export PBR_VERSION=0.0.1 - ''; - checkInputs = [ beautifulsoup4 pytestCheckHook @@ -52,9 +57,13 @@ buildPythonPackage rec { disabledTests = [ # Tests require network access "test_references_url" + # Tests are failing + "TestMdGenerate" ]; - pythonImportsCheck = [ "json_schema_for_humans" ]; + pythonImportsCheck = [ + "json_schema_for_humans" + ]; meta = with lib; { description = "Quickly generate HTML documentation from a JSON schema"; diff --git a/pkgs/development/python-modules/jsonschema/default.nix b/pkgs/development/python-modules/jsonschema/default.nix index 583936255fde..b78165fc4f32 100644 --- a/pkgs/development/python-modules/jsonschema/default.nix +++ b/pkgs/development/python-modules/jsonschema/default.nix @@ -1,4 +1,4 @@ -{ lib, buildPythonPackage, fetchPypi, python, isPy27 +{ lib, buildPythonPackage, fetchPypi, isPy27 , attrs , functools32 , importlib-metadata diff --git a/pkgs/development/python-modules/jug/default.nix b/pkgs/development/python-modules/jug/default.nix index 0750744885d3..3c805b4eca58 100644 --- a/pkgs/development/python-modules/jug/default.nix +++ b/pkgs/development/python-modules/jug/default.nix @@ -1,5 +1,4 @@ -{ lib, buildPythonPackage, fetchPypi, fetchpatch -, nose, numpy +{ lib, buildPythonPackage, fetchPypi, nose, numpy , bottle, pyyaml, redis, six , zlib , pytestCheckHook }: diff --git a/pkgs/development/python-modules/jupyter-repo2docker/default.nix b/pkgs/development/python-modules/jupyter-repo2docker/default.nix index f4eb9190aa4b..e147a5952cf4 100644 --- a/pkgs/development/python-modules/jupyter-repo2docker/default.nix +++ b/pkgs/development/python-modules/jupyter-repo2docker/default.nix @@ -1,10 +1,14 @@ -{ lib, buildPythonPackage, fetchPypi, pythonOlder +{ lib +, buildPythonPackage , docker +, entrypoints , escapism +, fetchFromGitHub +, iso8601 , jinja2 , pkgs-docker , python-json-logger -, pyyaml +, pythonOlder , ruamel_yaml , semver , toml @@ -12,18 +16,24 @@ }: buildPythonPackage rec { - version = "2021.8.0"; + version = "2021.08.0"; pname = "jupyter-repo2docker"; - disabled = pythonOlder "3.4"; + format = "setuptools"; - src = fetchPypi { - inherit pname version; - sha256 = "9d1b3c3ec7944ea6b0a234d6fa77293a2d1ed1c080eba8466aba94f811b3465d"; + disabled = pythonOlder "3.6"; + + src = fetchFromGitHub { + owner = "jupyterhub"; + repo = "repo2docker"; + rev = version; + sha256 = "10hcdag7ivyqyiqrmr9c48zynp8d81ic3px1ffgnaysih7lvkwb6"; }; propagatedBuildInputs = [ docker + entrypoints escapism + iso8601 jinja2 pkgs-docker python-json-logger @@ -33,7 +43,7 @@ buildPythonPackage rec { traitlets ]; - # tests not packaged with pypi release + # Tests require a running Docker instance doCheck = false; pythonImportsCheck = [ @@ -44,9 +54,9 @@ buildPythonPackage rec { ]; meta = with lib; { - homepage = "https://repo2docker.readthedocs.io/en/latest/"; - description = "Repo2docker: Turn code repositories into Jupyter enabled Docker Images"; + description = "Turn code repositories into Jupyter enabled Docker Images"; + homepage = "https://repo2docker.readthedocs.io/"; license = licenses.bsdOriginal; - maintainers = [ maintainers.costrouc ]; + maintainers = with maintainers; [ costrouc ]; }; } diff --git a/pkgs/development/python-modules/kaldi-active-grammar/fork.nix b/pkgs/development/python-modules/kaldi-active-grammar/fork.nix index ba14aec768cb..8f5a11f14c61 100644 --- a/pkgs/development/python-modules/kaldi-active-grammar/fork.nix +++ b/pkgs/development/python-modules/kaldi-active-grammar/fork.nix @@ -6,7 +6,6 @@ , icu , pkg-config , fetchFromGitHub -, git , python3 , openblas , zlib diff --git a/pkgs/development/python-modules/ldaptor/19.nix b/pkgs/development/python-modules/ldaptor/19.nix index cca696f1dff0..42141371c534 100644 --- a/pkgs/development/python-modules/ldaptor/19.nix +++ b/pkgs/development/python-modules/ldaptor/19.nix @@ -8,7 +8,6 @@ , service-identity , zope_interface , isPy3k -, python }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/lexid/default.nix b/pkgs/development/python-modules/lexid/default.nix index 5ef175d57878..0e9cf69ea8c0 100644 --- a/pkgs/development/python-modules/lexid/default.nix +++ b/pkgs/development/python-modules/lexid/default.nix @@ -1,4 +1,4 @@ -{ lib, python, pythonOlder, buildPythonPackage, fetchPypi, pytestCheckHook, click }: +{ lib, pythonOlder, buildPythonPackage, fetchPypi, pytestCheckHook, click }: buildPythonPackage rec { pname = "lexid"; diff --git a/pkgs/development/python-modules/libarchive-c/default.nix b/pkgs/development/python-modules/libarchive-c/default.nix index 7c33652c0ea5..92837ac77a10 100644 --- a/pkgs/development/python-modules/libarchive-c/default.nix +++ b/pkgs/development/python-modules/libarchive-c/default.nix @@ -1,7 +1,6 @@ { lib , stdenv , buildPythonPackage -, pythonAtLeast , fetchFromGitHub , libarchive , glibcLocales diff --git a/pkgs/development/python-modules/libcst/default.nix b/pkgs/development/python-modules/libcst/default.nix index 5b950ab57397..712b15f17f22 100644 --- a/pkgs/development/python-modules/libcst/default.nix +++ b/pkgs/development/python-modules/libcst/default.nix @@ -15,11 +15,11 @@ buildPythonPackage rec { pname = "libcst"; - version = "0.3.20"; + version = "0.3.21"; + format = "setuptools"; + disabled = pythonOlder "3.6"; - # Some files for tests missing from PyPi - # https://github.com/Instagram/LibCST/issues/331 src = fetchFromGitHub { owner = "instagram"; repo = pname; @@ -54,7 +54,9 @@ buildPythonPackage rec { "test_codemod_formatter_error_input" ]; - pythonImportsCheck = [ "libcst" ]; + pythonImportsCheck = [ + "libcst" + ]; meta = with lib; { description = "Concrete Syntax Tree (CST) parser and serializer library for Python"; diff --git a/pkgs/development/python-modules/liblzfse/default.nix b/pkgs/development/python-modules/liblzfse/default.nix index 72159fa5f134..90533cc30206 100644 --- a/pkgs/development/python-modules/liblzfse/default.nix +++ b/pkgs/development/python-modules/liblzfse/default.nix @@ -2,7 +2,6 @@ , buildPythonPackage , fetchPypi , lzfse -, pytestCheckHook }: buildPythonPackage rec { pname = "pyliblzfse"; diff --git a/pkgs/development/python-modules/libvirt/default.nix b/pkgs/development/python-modules/libvirt/default.nix index 4572aee08b33..c2c0469aa819 100644 --- a/pkgs/development/python-modules/libvirt/default.nix +++ b/pkgs/development/python-modules/libvirt/default.nix @@ -2,13 +2,13 @@ buildPythonPackage rec { pname = "libvirt"; - version = "7.8.0"; + version = "7.9.0"; src = assert version == libvirt.version; fetchFromGitLab { owner = "libvirt"; repo = "libvirt-python"; rev = "v${version}"; - sha256 = "sha256-GuV++CFkywW0LGconyahfBGY+jjFA27Qu9JGIFt4bus="; + sha256 = "sha256-cfCyQ3KTv0lYTZMriUhm6psBAcJJIcmR/M9V/lrLmVE="; }; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/development/python-modules/lightgbm/default.nix b/pkgs/development/python-modules/lightgbm/default.nix index 0bfa586a8ba5..7e241be4aafe 100644 --- a/pkgs/development/python-modules/lightgbm/default.nix +++ b/pkgs/development/python-modules/lightgbm/default.nix @@ -10,11 +10,11 @@ buildPythonPackage rec { pname = "lightgbm"; - version = "3.3.0"; + version = "3.3.1"; src = fetchPypi { inherit pname version; - sha256 = "107ae7babbbda2c2f0e07484f0c53cdeb455e9219235f79dc4e1685d7541e505"; + sha256 = "5b9f31759ab4e94d9409deb03104c55b0a40058a6ccea804022046d926bc4904"; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/linecache2/default.nix b/pkgs/development/python-modules/linecache2/default.nix index 3c2238b0875d..4231ed43ad5b 100644 --- a/pkgs/development/python-modules/linecache2/default.nix +++ b/pkgs/development/python-modules/linecache2/default.nix @@ -2,7 +2,6 @@ , buildPythonPackage , fetchPypi , pbr -, isPy3k }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/livestreamer/default.nix b/pkgs/development/python-modules/livestreamer/default.nix index 66f2540bfc30..4dd4c35cc738 100644 --- a/pkgs/development/python-modules/livestreamer/default.nix +++ b/pkgs/development/python-modules/livestreamer/default.nix @@ -6,7 +6,6 @@ , rtmpdump , pycrypto , requests -, isPy27 }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/log-symbols/default.nix b/pkgs/development/python-modules/log-symbols/default.nix index f8cdce634ac9..819f771b91ee 100644 --- a/pkgs/development/python-modules/log-symbols/default.nix +++ b/pkgs/development/python-modules/log-symbols/default.nix @@ -2,7 +2,6 @@ , colorama , fetchPypi , isPy27 -, pytestCheckHook , lib }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/m3u8/default.nix b/pkgs/development/python-modules/m3u8/default.nix index decad482bef1..552a095e705f 100644 --- a/pkgs/development/python-modules/m3u8/default.nix +++ b/pkgs/development/python-modules/m3u8/default.nix @@ -1,4 +1,4 @@ -{ lib, buildPythonPackage, python, fetchFromGitHub, requests, iso8601, bottle, pytest, pytest-cov }: +{ lib, buildPythonPackage, fetchFromGitHub, requests, iso8601, bottle, pytest, pytest-cov }: buildPythonPackage rec { pname = "m3u8"; diff --git a/pkgs/development/python-modules/mailman-hyperkitty/default.nix b/pkgs/development/python-modules/mailman-hyperkitty/default.nix index 3bf996fa714a..649d8d4cf3df 100644 --- a/pkgs/development/python-modules/mailman-hyperkitty/default.nix +++ b/pkgs/development/python-modules/mailman-hyperkitty/default.nix @@ -1,26 +1,53 @@ -{ lib, buildPythonPackage, fetchPypi, mailman, mock }: +{ lib +, buildPythonPackage +, fetchPypi +, mailman +, mock +, nose2 +, python +, pythonOlder +, requests +, zope_interface +}: buildPythonPackage rec { pname = "mailman-hyperkitty"; version = "1.1.0"; + format = "setuptools"; + + disabled = pythonOlder "3.9"; src = fetchPypi { inherit pname version; sha256 = "1lfqa9admhvdv71f528jmz2wl0i5cv77v6l64px2pm4zqr9ckkjx"; }; - propagatedBuildInputs = [ mailman ]; - checkInputs = [ mock ]; + propagatedBuildInputs = [ + mailman + requests + zope_interface + ]; + + checkInputs = [ + mock + nose2 + ]; checkPhase = '' - python -m nose2 -v + ${python.interpreter} -m nose2 -v ''; + + # There is an AssertionError doCheck = false; + pythonImportsCheck = [ + "mailman_hyperkitty" + ]; + meta = with lib; { description = "Mailman archiver plugin for HyperKitty"; homepage = "https://gitlab.com/mailman/mailman-hyperkitty"; - license = licenses.gpl3; + license = licenses.gpl3Plus; maintainers = with maintainers; [ globin qyliss ]; }; } diff --git a/pkgs/development/python-modules/manimpango/default.nix b/pkgs/development/python-modules/manimpango/default.nix new file mode 100644 index 000000000000..95e035864711 --- /dev/null +++ b/pkgs/development/python-modules/manimpango/default.nix @@ -0,0 +1,37 @@ +{ stdenv, lib, buildPythonPackage, fetchFromGitHub, python, pkg-config, pango, cython, AppKit, pytestCheckHook }: + +buildPythonPackage rec { + pname = "manimpango"; + version = "0.3.1"; + + src = fetchFromGitHub { + owner = "ManimCommunity"; + repo = pname; + rev = "v${version}"; + sha256 = "ldZfvv5kloQ0uj0agxOP8cRh+Ix8f9Z0PT+pnhWYjiQ="; + }; + + postPatch = '' + substituteInPlace setup.cfg --replace "--cov --no-cov-on-fail" "" + ''; + + nativeBuildInputs = [ pkg-config ]; + buildInputs = [ pango ] ++ lib.optionals stdenv.isDarwin [ AppKit ]; + propagatedBuildInputs = [ + cython + ]; + + preBuild = '' + ${python.interpreter} setup.py build_ext --inplace + ''; + + checkInputs = [ pytestCheckHook ]; + pythonImportsCheck = [ "manimpango" ]; + + meta = with lib; { + homepage = "https://github.com/ManimCommunity/ManimPango"; + license = licenses.gpl3Plus; + description = "Binding for Pango"; + maintainers = [ maintainers.angustrau ]; + }; +} diff --git a/pkgs/development/python-modules/markdown/3_1.nix b/pkgs/development/python-modules/markdown/3_1.nix index eb9b2e59ec81..13ed2f1744a2 100644 --- a/pkgs/development/python-modules/markdown/3_1.nix +++ b/pkgs/development/python-modules/markdown/3_1.nix @@ -6,7 +6,6 @@ , pyyaml , pythonOlder , importlib-metadata -, isPy3k }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/mathlibtools/default.nix b/pkgs/development/python-modules/mathlibtools/default.nix index a788a9c60b7d..517d74563aea 100644 --- a/pkgs/development/python-modules/mathlibtools/default.nix +++ b/pkgs/development/python-modules/mathlibtools/default.nix @@ -1,5 +1,5 @@ { lib, buildPythonPackage, fetchPypi, PyGithub, GitPython, toml, click, tqdm, - paramiko, networkx, pydot, pyyaml }: + networkx, pydot, pyyaml, atomicwrites }: buildPythonPackage rec { pname = "mathlibtools"; @@ -11,7 +11,7 @@ buildPythonPackage rec { }; propagatedBuildInputs = [ - PyGithub GitPython toml click tqdm paramiko networkx pydot pyyaml + PyGithub GitPython toml click tqdm networkx pydot pyyaml atomicwrites ]; # requires internet access diff --git a/pkgs/development/python-modules/mdp/default.nix b/pkgs/development/python-modules/mdp/default.nix index 55a440e68089..dc73daa449b9 100644 --- a/pkgs/development/python-modules/mdp/default.nix +++ b/pkgs/development/python-modules/mdp/default.nix @@ -1,4 +1,10 @@ -{ lib, buildPythonPackage, fetchPypi, pytest, future, numpy }: +{ lib +, buildPythonPackage +, fetchPypi +, future +, numpy +, pytest +}: buildPythonPackage rec { pname = "MDP"; @@ -9,11 +15,27 @@ buildPythonPackage rec { sha256 = "ac52a652ccbaed1857ff1209862f03bf9b06d093b12606fb410787da3aa65a0e"; }; - checkInputs = [ pytest ]; propagatedBuildInputs = [ future numpy ]; - # Tests disabled because of missing dependencies not in nix - doCheck = false; + checkInputs = [ pytest ]; + + doCheck = true; + + pythonImportsCheck = [ "mdp" "bimdp" ]; + + postPatch = '' + # https://github.com/mdp-toolkit/mdp-toolkit/issues/92 + substituteInPlace mdp/utils/routines.py --replace numx.typeDict numx.sctypeDict + ''; + + checkPhase = '' + runHook preCheck + + pytest --seed 7710873 mdp + pytest --seed 7710873 bimdp + + runHook postCheck + ''; meta = with lib; { description = "Library for building complex data processing software by combining widely used machine learning algorithms"; diff --git a/pkgs/development/python-modules/meshlabxml/default.nix b/pkgs/development/python-modules/meshlabxml/default.nix index c1091296d2e1..e0793f3ec978 100644 --- a/pkgs/development/python-modules/meshlabxml/default.nix +++ b/pkgs/development/python-modules/meshlabxml/default.nix @@ -1,7 +1,6 @@ { buildPythonPackage, fetchPypi, - pythonOlder, lib, }: diff --git a/pkgs/development/python-modules/mesonpep517/default.nix b/pkgs/development/python-modules/mesonpep517/default.nix index 8805c2039034..5e33ae9c1033 100644 --- a/pkgs/development/python-modules/mesonpep517/default.nix +++ b/pkgs/development/python-modules/mesonpep517/default.nix @@ -3,9 +3,7 @@ , fetchPypi , meson , ninja -, intreehooks , toml -, pythonOlder }: # TODO: offer meson as a Python package so we have dist-info folder. diff --git a/pkgs/development/python-modules/metakernel/default.nix b/pkgs/development/python-modules/metakernel/default.nix index eec3da25e0f2..b87b87a1e4b8 100644 --- a/pkgs/development/python-modules/metakernel/default.nix +++ b/pkgs/development/python-modules/metakernel/default.nix @@ -2,9 +2,6 @@ , buildPythonPackage , fetchPypi , ipykernel -, isPy27 -, mock -, pytest }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/mill-local/default.nix b/pkgs/development/python-modules/mill-local/default.nix new file mode 100644 index 000000000000..9d00bb71c8bc --- /dev/null +++ b/pkgs/development/python-modules/mill-local/default.nix @@ -0,0 +1,41 @@ +{ lib +, aiohttp +, async-timeout +, buildPythonPackage +, fetchFromGitHub +, pythonOlder +}: + +buildPythonPackage rec { + pname = "mill-local"; + version = "0.1.0"; + format = "setuptools"; + + disabled = pythonOlder "3.8"; + + src = fetchFromGitHub { + owner = "Danielhiversen"; + repo = "pyMillLocal"; + rev = version; + sha256 = "0q0frwj9yxdmqi5axl7gxirfflgn8xh1932c6lhp9my2v1d0gdrk"; + }; + + propagatedBuildInputs = [ + aiohttp + async-timeout + ]; + + # Project has no tests + doCheck = false; + + pythonImportsCheck = [ + "mill_local" + ]; + + meta = with lib; { + description = "Python module to communicate locally with Mill heaters"; + homepage = "https://github.com/Danielhiversen/pyMillLocal"; + license = with licenses; [ mit ]; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/millheater/default.nix b/pkgs/development/python-modules/millheater/default.nix index f69e7e827cff..0ff22033f644 100644 --- a/pkgs/development/python-modules/millheater/default.nix +++ b/pkgs/development/python-modules/millheater/default.nix @@ -1,4 +1,3 @@ - { lib , aiohttp , async-timeout @@ -10,14 +9,14 @@ buildPythonPackage rec { pname = "millheater"; - version = "0.8.0"; + version = "0.8.1"; disabled = pythonOlder "3.6"; src = fetchFromGitHub { owner = "Danielhiversen"; repo = "pymill"; rev = version; - sha256 = "sha256-PL9qP6SKE8gsBUdfrPf9Fs+vU/lkpOjmkvq3cWw3Uak="; + sha256 = "0269lhb6y4c13n6krsl2b66ldvzkd26jlax7bbnkvag2iv7g6hzj"; }; propagatedBuildInputs = [ @@ -29,7 +28,9 @@ buildPythonPackage rec { # Project has no tests doCheck = false; - pythonImportsCheck = [ "mill" ]; + pythonImportsCheck = [ + "mill" + ]; meta = with lib; { description = "Python library for Mill heater devices"; diff --git a/pkgs/development/python-modules/mlflow/default.nix b/pkgs/development/python-modules/mlflow/default.nix index 6ef5788b8418..abd79d22dc16 100644 --- a/pkgs/development/python-modules/mlflow/default.nix +++ b/pkgs/development/python-modules/mlflow/default.nix @@ -20,7 +20,6 @@ , sqlalchemy , gorilla , gunicorn -, pytest }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/mohawk/default.nix b/pkgs/development/python-modules/mohawk/default.nix index e260bb7b54a3..6616ba7d537b 100644 --- a/pkgs/development/python-modules/mohawk/default.nix +++ b/pkgs/development/python-modules/mohawk/default.nix @@ -1,4 +1,4 @@ -{ lib, buildPythonPackage, fetchPypi, python, mock, nose, pytest, six }: +{ lib, buildPythonPackage, fetchPypi, mock, nose, pytest, six }: with lib; buildPythonPackage rec { diff --git a/pkgs/development/python-modules/mox3/default.nix b/pkgs/development/python-modules/mox3/default.nix index 593d845ad866..3aa8b02dc101 100644 --- a/pkgs/development/python-modules/mox3/default.nix +++ b/pkgs/development/python-modules/mox3/default.nix @@ -2,14 +2,12 @@ , buildPythonPackage , fetchPypi , pythonOlder -, python , subunit , testrepository , testtools , six , pbr , fixtures -, isPy36 }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/mrkd/default.nix b/pkgs/development/python-modules/mrkd/default.nix new file mode 100644 index 000000000000..22cd93910d6b --- /dev/null +++ b/pkgs/development/python-modules/mrkd/default.nix @@ -0,0 +1,28 @@ +{ lib +, buildPythonPackage +, fetchPypi +, jinja2 +, mistune +, pygments +, setuptools +}: + +buildPythonPackage rec { + pname = "mrkd"; + version = "0.2.0"; + + src = fetchPypi { + inherit pname version; + sha256 = "456f8c1be99da268554b29c6b5383532e58119def5a65d85270bc6a0ecc26aaf"; + }; + + propagatedBuildInputs = [ jinja2 mistune pygments setuptools ]; + + pythonImportsCheck = [ "mrkd" ]; + + meta = with lib; { + description = "Write man pages using Markdown, and convert them to Roff or HTML"; + homepage = "https://github.com/refi64/mrkd"; + license = licenses.bsd2; + }; +} diff --git a/pkgs/development/python-modules/mutagen/1.43.nix b/pkgs/development/python-modules/mutagen/1.43.nix index a7a7c7c66049..7f2e9f452b4d 100644 --- a/pkgs/development/python-modules/mutagen/1.43.nix +++ b/pkgs/development/python-modules/mutagen/1.43.nix @@ -1,7 +1,6 @@ { lib , buildPythonPackage , fetchPypi -, fetchpatch , hypothesis , pycodestyle , pyflakes diff --git a/pkgs/development/python-modules/mutagen/default.nix b/pkgs/development/python-modules/mutagen/default.nix index df0872242a17..33fc3c02daeb 100644 --- a/pkgs/development/python-modules/mutagen/default.nix +++ b/pkgs/development/python-modules/mutagen/default.nix @@ -2,7 +2,6 @@ , buildPythonPackage , fetchPypi , isPy27 -, fetchpatch , flake8 , hypothesis , pycodestyle diff --git a/pkgs/development/python-modules/mypy-boto3-s3/default.nix b/pkgs/development/python-modules/mypy-boto3-s3/default.nix index 587cf0bd68f3..c45ccaca013d 100644 --- a/pkgs/development/python-modules/mypy-boto3-s3/default.nix +++ b/pkgs/development/python-modules/mypy-boto3-s3/default.nix @@ -8,13 +8,13 @@ buildPythonPackage rec { pname = "mypy-boto3-s3"; - version = "1.19.8"; + version = "1.20.1"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "60481cae38e01273d09a6159e4ff8c36d5d7e335319117a16cdb3d887928a7b4"; + sha256 = "sha256-RnWlDiXol074gikg8i449rx4ENG7Ac7kz9lMi12rkuw="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/nassl/default.nix b/pkgs/development/python-modules/nassl/default.nix index 97033224c14a..b9e19439251a 100644 --- a/pkgs/development/python-modules/nassl/default.nix +++ b/pkgs/development/python-modules/nassl/default.nix @@ -3,7 +3,8 @@ , fetchurl , buildPythonPackage , pkgsStatic -, openssl +, openssl_1_1 +, openssl_1_0_2 , invoke , tls-parser , cacert @@ -36,7 +37,7 @@ let "enable-mdc2" "-fPIC" ]; - opensslStatic = (openssl.override nasslOpensslArgs).overrideAttrs ( + opensslStatic = (openssl_1_1.override nasslOpensslArgs).overrideAttrs ( oldAttrs: rec { name = "openssl-${version}"; version = "1.1.1h"; @@ -49,10 +50,24 @@ let "enable-tls1_3" "no-async" ]; + patches = builtins.filter ( + p: (builtins.baseNameOf (toString p)) != "macos-yosemite-compat.patch" + ) oldAttrs.patches; buildInputs = oldAttrs.buildInputs ++ [ zlibStatic cacert ]; + meta = oldAttrs.meta // { + knownVulnerabilities = [ + "CVE-2020-1971" + "CVE-2021-23840" + "CVE-2021-23841" + "CVE-2021-3449" + "CVE-2021-3450" + "CVE-2021-3711" + "CVE-2021-3712" + ]; + }; } ); - opensslLegacyStatic = (openssl.override nasslOpensslArgs).overrideAttrs ( + opensslLegacyStatic = (openssl_1_0_2.override nasslOpensslArgs).overrideAttrs ( oldAttrs: rec { name = "openssl-${version}"; version = "1.0.2e"; @@ -61,7 +76,9 @@ let sha256 = "1zqb1rff1wikc62a7vj5qxd1k191m8qif5d05mwdxz2wnzywlg72"; }; configureFlags = oldAttrs.configureFlags ++ nasslOpensslFlagsCommon; - patches = [ ]; + patches = builtins.filter ( + p: (builtins.baseNameOf (toString p)) == "darwin64-arm64.patch" + ) oldAttrs.patches; buildInputs = oldAttrs.buildInputs ++ [ zlibStatic ]; # openssl_1_0_2 needs `withDocs = false` outputs = lib.remove "doc" oldAttrs.outputs; @@ -70,14 +87,14 @@ let in buildPythonPackage rec { pname = "nassl"; - version = "4.0.0"; + version = "4.0.1"; disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "nabla-c0d3"; repo = pname; rev = version; - hash = "sha256-6lk2YfI9km10YbJAn38fvo9qa4iXcByL+udCsDe+kvU="; + hash = "sha256-QzO7ABh2weBO6NVFIj7kZpS8ashbDGompuvdKteJeUc="; }; postPatch = let diff --git a/pkgs/development/python-modules/nbclient/default.nix b/pkgs/development/python-modules/nbclient/default.nix index e47af565bdc3..b6cfbc51cac0 100644 --- a/pkgs/development/python-modules/nbclient/default.nix +++ b/pkgs/development/python-modules/nbclient/default.nix @@ -6,12 +6,12 @@ buildPythonPackage rec { pname = "nbclient"; - version = "0.5.4"; + version = "0.5.8"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "6c8ad36a28edad4562580847f9f1636fe5316a51a323ed85a24a4ad37d4aefce"; + sha256 = "sha256-NPUsycuDGl2MzXAxU341THXcYaJEh/mYcS0Sid4yCiU="; }; inherit doCheck; @@ -22,5 +22,6 @@ buildPythonPackage rec { homepage = "https://github.com/jupyter/nbclient"; description = "A client library for executing notebooks"; license = licenses.bsd3; + maintainers = [ maintainers.erictapen ]; }; } diff --git a/pkgs/development/python-modules/nbdime/default.nix b/pkgs/development/python-modules/nbdime/default.nix index 0d073027e5d5..fa72ab748d75 100644 --- a/pkgs/development/python-modules/nbdime/default.nix +++ b/pkgs/development/python-modules/nbdime/default.nix @@ -25,12 +25,12 @@ buildPythonPackage rec { pname = "nbdime"; - version = "3.1.0"; + version = "3.1.1"; disabled = !isPy3k; src = fetchPypi { inherit pname version; - sha256 = "12dc4390b355b26d07ac8d11d50efbcb54bae0ad5842b817131babd2f4567963"; + sha256 = "67767320e971374f701a175aa59abd3a554723039d39fae908e72d16330d648b"; }; checkInputs = [ diff --git a/pkgs/development/python-modules/nbval/default.nix b/pkgs/development/python-modules/nbval/default.nix index 87544f1b0899..3db084665221 100644 --- a/pkgs/development/python-modules/nbval/default.nix +++ b/pkgs/development/python-modules/nbval/default.nix @@ -11,7 +11,6 @@ , glibcLocales , matplotlib , sympy -, pytest-cov }: buildPythonPackage rec { @@ -23,15 +22,10 @@ buildPythonPackage rec { sha256 = "cfefcd2ef66ee2d337d0b252c6bcec4023384eb32e8b9e5fcc3ac80ab8cd7d40"; }; - checkInputs = [ - pytestCheckHook - matplotlib - sympy - pytest-cov + buildInputs = [ + glibcLocales ]; - buildInputs = [ glibcLocales ]; - propagatedBuildInputs = [ coverage ipykernel @@ -41,23 +35,35 @@ buildPythonPackage rec { six ]; - pytestFlagsArray = [ - "tests" + checkInputs = [ + pytestCheckHook + matplotlib + sympy + ]; + + disabledTestPaths = [ + "tests/test_ignore.py" # These are the main tests but they're fragile so skip them. They error # whenever matplotlib outputs any unexpected warnings, e.g. deprecation # warnings. - "--ignore=tests/test_unit_tests_in_notebooks.py" + "tests/test_unit_tests_in_notebooks.py" # Impure - "--ignore=tests/test_timeouts.py" + "tests/test_timeouts.py" + # No value for us + "tests/test_coverage.py" ]; # Some of the tests use localhost networking. __darwinAllowLocalNetworking = true; + pythonImportsCheck = [ + "nbval" + ]; + meta = with lib; { description = "A py.test plugin to validate Jupyter notebooks"; homepage = "https://github.com/computationalmodelling/nbval"; license = licenses.bsd3; - maintainers = [ maintainers.costrouc ]; + maintainers = with maintainers; [ costrouc ]; }; } diff --git a/pkgs/development/python-modules/nettigo-air-monitor/default.nix b/pkgs/development/python-modules/nettigo-air-monitor/default.nix index 6142972c0c94..ad591163f081 100644 --- a/pkgs/development/python-modules/nettigo-air-monitor/default.nix +++ b/pkgs/development/python-modules/nettigo-air-monitor/default.nix @@ -12,14 +12,16 @@ buildPythonPackage rec { pname = "nettigo-air-monitor"; - version = "1.1.1"; - disabled = pythonOlder "3.6"; + version = "1.2.0"; + format = "setuptools"; + + disabled = pythonOlder "3.8"; src = fetchFromGitHub { owner = "bieniu"; repo = pname; rev = version; - sha256 = "sha256-OIB1d6XtstUr5P0q/dmyJS7+UbtkFQIiuSnzwcdP1mE="; + sha256 = "sha256-KPgBbYGbKpKEPMxywgRvJcSCEYSUQkiPEFqj+bB0g1s="; }; propagatedBuildInputs = [ @@ -41,7 +43,9 @@ buildPythonPackage rec { --replace "--cov --cov-report term-missing " "" ''; - pythonImportsCheck = [ "nettigo_air_monitor" ]; + pythonImportsCheck = [ + "nettigo_air_monitor" + ]; meta = with lib; { description = "Python module to get air quality data from Nettigo Air Monitor devices"; diff --git a/pkgs/development/python-modules/nevow/default.nix b/pkgs/development/python-modules/nevow/default.nix index b608ae58fc70..37586ccfcb47 100644 --- a/pkgs/development/python-modules/nevow/default.nix +++ b/pkgs/development/python-modules/nevow/default.nix @@ -1,4 +1,4 @@ -{ lib, buildPythonPackage, fetchpatch, fetchPypi, isPy3k, twisted }: +{ lib, buildPythonPackage, fetchPypi, isPy3k, twisted }: buildPythonPackage rec { pname = "Nevow"; diff --git a/pkgs/development/python-modules/nitime/default.nix b/pkgs/development/python-modules/nitime/default.nix index ccbf540f75f4..f9c84acef882 100644 --- a/pkgs/development/python-modules/nitime/default.nix +++ b/pkgs/development/python-modules/nitime/default.nix @@ -1,6 +1,5 @@ { lib , buildPythonPackage -, python , fetchPypi , isPy27 , pytestCheckHook diff --git a/pkgs/development/python-modules/nltk/default.nix b/pkgs/development/python-modules/nltk/default.nix index eb715c91e50d..346c8339dbe1 100644 --- a/pkgs/development/python-modules/nltk/default.nix +++ b/pkgs/development/python-modules/nltk/default.nix @@ -1,4 +1,4 @@ -{ fetchPypi, buildPythonPackage, lib, six, singledispatch ? null, isPy3k +{ fetchPypi, buildPythonPackage, lib, singledispatch ? null, isPy3k , click , joblib , regex diff --git a/pkgs/development/python-modules/numpy/default.nix b/pkgs/development/python-modules/numpy/default.nix index 60f3bf1091ec..6119ee384229 100644 --- a/pkgs/development/python-modules/numpy/default.nix +++ b/pkgs/development/python-modules/numpy/default.nix @@ -8,7 +8,6 @@ , blas , lapack , writeTextFile -, isPyPy , cython , setuptoolsBuildHook , pythonOlder diff --git a/pkgs/development/python-modules/ocrmypdf/default.nix b/pkgs/development/python-modules/ocrmypdf/default.nix index b6aef62dd74d..71506e60b60e 100644 --- a/pkgs/development/python-modules/ocrmypdf/default.nix +++ b/pkgs/development/python-modules/ocrmypdf/default.nix @@ -30,7 +30,7 @@ buildPythonPackage rec { pname = "ocrmypdf"; - version = "12.7.0"; + version = "12.7.2"; src = fetchFromGitHub { owner = "jbarlow83"; @@ -42,7 +42,7 @@ buildPythonPackage rec { extraPostFetch = '' rm "$out/.git_archival.txt" ''; - sha256 = "sha256-lpTuaZRrmFoKV1SAFoGpsYfPBkLB2+iB63fg3t9RC5o="; + sha256 = "sha256-+mh7NgAk7R/94FXjRV+SLy478pZwYLLS8HwCazEbMf4="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; diff --git a/pkgs/development/python-modules/ofxtools/default.nix b/pkgs/development/python-modules/ofxtools/default.nix index a32b0b232949..0f0dfb057695 100644 --- a/pkgs/development/python-modules/ofxtools/default.nix +++ b/pkgs/development/python-modules/ofxtools/default.nix @@ -2,7 +2,6 @@ , buildPythonPackage , fetchFromGitHub , nose -, python , pythonOlder }: diff --git a/pkgs/development/python-modules/onnx/default.nix b/pkgs/development/python-modules/onnx/default.nix index 3f6a86928bc3..6a682f448104 100644 --- a/pkgs/development/python-modules/onnx/default.nix +++ b/pkgs/development/python-modules/onnx/default.nix @@ -1,30 +1,32 @@ { lib , buildPythonPackage +, cmake , fetchPypi , isPy27 -, cmake -, protobuf -, numpy -, six -, typing-extensions -, pytestCheckHook , nbval +, numpy +, protobuf +, pytestCheckHook +, six , tabulate +, typing-extensions }: buildPythonPackage rec { pname = "onnx"; - version = "1.10.1"; + version = "1.10.2"; + format = "setuptools"; - # Python 2 is not supported as of Onnx v1.8 disabled = isPy27; src = fetchPypi { inherit pname version; - sha256 = "9d941ba76cab55db8913ecad9dc50cefeb368460f6338a91783a5d7643f3a044"; + sha256 = "sha256-JNc8p9/X5sczmUT4lVS0AQcZiZM3kk/KFEfY8bXbUNY="; }; - nativeBuildInputs = [ cmake ]; + nativeBuildInputs = [ + cmake + ]; propagatedBuildInputs = [ protobuf @@ -34,8 +36,8 @@ buildPythonPackage rec { ]; checkInputs = [ - pytestCheckHook nbval + pytestCheckHook tabulate ]; @@ -59,10 +61,14 @@ buildPythonPackage rec { # The setup.py does all the configuration dontUseCmakeConfigure = true; - meta = { - homepage = "http://onnx.ai"; + pythonImportsCheck = [ + "onnx" + ]; + + meta = with lib; { description = "Open Neural Network Exchange"; - license = lib.licenses.mit; - maintainers = [ lib.maintainers.acairncross ]; + homepage = "http://onnx.ai"; + license = licenses.asl20; + maintainers = with maintainers; [ acairncross ]; }; } diff --git a/pkgs/development/python-modules/open-garage/default.nix b/pkgs/development/python-modules/open-garage/default.nix index 87d524845751..0cb71a86fe57 100644 --- a/pkgs/development/python-modules/open-garage/default.nix +++ b/pkgs/development/python-modules/open-garage/default.nix @@ -8,15 +8,16 @@ buildPythonPackage rec { pname = "open-garage"; - version = "0.1.6"; + version = "0.2.0"; + format = "setuptools"; - disabled = pythonOlder "3.5"; + disabled = pythonOlder "3.6"; src = fetchFromGitHub { owner = "Danielhiversen"; repo = "pyOpenGarage"; rev = version; - sha256 = "sha256-vm51Fjej0OQ7LftisS/tsnxZxa5c/j7eGIROMsEcXNE="; + sha256 = "sha256-iJ7HcJhpTceFpHTUdNZOYDuxUWZGWPmZ9lxD3CyGvk8="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/openbabel-bindings/default.nix b/pkgs/development/python-modules/openbabel-bindings/default.nix index 6488b8fad2fb..fad677987bf4 100644 --- a/pkgs/development/python-modules/openbabel-bindings/default.nix +++ b/pkgs/development/python-modules/openbabel-bindings/default.nix @@ -13,7 +13,7 @@ buildPythonPackage rec { # some functionality to work (inparticular, pybel). # see https://openbabel.org/docs/dev/Installation/install.html BABEL_LIBDIR = "${openbabel}/lib/openbabel/3.1.0"; - LD_LIBRARY_PATH = "$LD_LIBRARY_PATH:${openbabel}/lib"; + LD_LIBRARY_PATH = "${openbabel}/lib"; doCheck = false; pythonImportsCheck = [ "openbabel" ]; diff --git a/pkgs/development/python-modules/openrazer/daemon.nix b/pkgs/development/python-modules/openrazer/daemon.nix index 8dcb9a9925d1..2e44c3756e32 100644 --- a/pkgs/development/python-modules/openrazer/daemon.nix +++ b/pkgs/development/python-modules/openrazer/daemon.nix @@ -4,7 +4,6 @@ , daemonize , dbus-python , fetchFromGitHub -, fetchpatch , gobject-introspection , gtk3 , makeWrapper diff --git a/pkgs/development/python-modules/openrouteservice/default.nix b/pkgs/development/python-modules/openrouteservice/default.nix index cae450a9af33..f5e1ab81fbf7 100644 --- a/pkgs/development/python-modules/openrouteservice/default.nix +++ b/pkgs/development/python-modules/openrouteservice/default.nix @@ -1,4 +1,4 @@ -{ lib, buildPythonPackage, fetchFromGitHub, requests, responses, pytestCheckHook }: +{ lib, buildPythonPackage, fetchFromGitHub, responses, pytestCheckHook }: buildPythonPackage rec { pname = "openrouteservice"; diff --git a/pkgs/development/python-modules/openstacksdk/default.nix b/pkgs/development/python-modules/openstacksdk/default.nix index 27940dde7670..db2043a6f929 100644 --- a/pkgs/development/python-modules/openstacksdk/default.nix +++ b/pkgs/development/python-modules/openstacksdk/default.nix @@ -14,7 +14,6 @@ , pbr , pyyaml , requestsexceptions -, stdenv }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/orvibo/default.nix b/pkgs/development/python-modules/orvibo/default.nix index 17a3a7691112..8de932a82f0e 100644 --- a/pkgs/development/python-modules/orvibo/default.nix +++ b/pkgs/development/python-modules/orvibo/default.nix @@ -1,12 +1,6 @@ { lib , buildPythonPackage -, click , fetchFromGitHub -, mock -, pytest-runner -, pytestCheckHook -, requests -, websocket-client }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/os-service-types/tests.nix b/pkgs/development/python-modules/os-service-types/tests.nix index 33f641d14c58..4cb93d797476 100644 --- a/pkgs/development/python-modules/os-service-types/tests.nix +++ b/pkgs/development/python-modules/os-service-types/tests.nix @@ -1,5 +1,4 @@ -{ stdenv -, buildPythonPackage +{ buildPythonPackage , keystoneauth1 , os-service-types , oslotest diff --git a/pkgs/development/python-modules/oslo-config/tests.nix b/pkgs/development/python-modules/oslo-config/tests.nix index 82400e67ea58..c94eb2941b77 100644 --- a/pkgs/development/python-modules/oslo-config/tests.nix +++ b/pkgs/development/python-modules/oslo-config/tests.nix @@ -1,5 +1,4 @@ -{ stdenv -, buildPythonPackage +{ buildPythonPackage , oslo-config , docutils , oslo-log diff --git a/pkgs/development/python-modules/oslotest/tests.nix b/pkgs/development/python-modules/oslotest/tests.nix index 3c07a35c17d8..542e9467d16f 100644 --- a/pkgs/development/python-modules/oslotest/tests.nix +++ b/pkgs/development/python-modules/oslotest/tests.nix @@ -1,5 +1,4 @@ -{ stdenv -, buildPythonPackage +{ buildPythonPackage , oslo-config , oslotest , stestr diff --git a/pkgs/development/python-modules/p1monitor/default.nix b/pkgs/development/python-modules/p1monitor/default.nix index 4a7ce2aec3f2..77a9b8ba512e 100644 --- a/pkgs/development/python-modules/p1monitor/default.nix +++ b/pkgs/development/python-modules/p1monitor/default.nix @@ -1,6 +1,5 @@ { lib , aiohttp -, aresponses , buildPythonPackage , fetchFromGitHub , poetry-core diff --git a/pkgs/development/python-modules/packaging/2.nix b/pkgs/development/python-modules/packaging/2.nix index a9b4e159469d..0f9e61859a16 100644 --- a/pkgs/development/python-modules/packaging/2.nix +++ b/pkgs/development/python-modules/packaging/2.nix @@ -5,7 +5,6 @@ , six , pytestCheckHook , pretend -, flit-core }: # We keep 20.4 because it uses setuptools instead of flit-core diff --git a/pkgs/development/python-modules/panacotta/default.nix b/pkgs/development/python-modules/panacotta/default.nix new file mode 100644 index 000000000000..efaee8a42168 --- /dev/null +++ b/pkgs/development/python-modules/panacotta/default.nix @@ -0,0 +1,34 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, pythonOlder +}: + +buildPythonPackage rec { + pname = "panacotta"; + version = "0.1"; + format = "setuptools"; + + disabled = pythonOlder "3.8"; + + src = fetchFromGitHub { + owner = "u1f35c"; + repo = "python-panacotta"; + rev = "panacotta-${version}"; + sha256 = "0v2fa18n50iy18n22klkgjral728iplj6yk3b6hjkzas5dk9wd9c"; + }; + + # Project has no tests + doCheck = false; + + pythonImportsCheck = [ + "panacotta" + ]; + + meta = with lib; { + description = "Python API for controlling Panasonic Blu-Ray players"; + homepage = "https://github.com/u1f35c/python-panacotta"; + license = licenses.gpl3Plus; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/pandas/default.nix b/pkgs/development/python-modules/pandas/default.nix index 019429111308..6c2580877749 100644 --- a/pkgs/development/python-modules/pandas/default.nix +++ b/pkgs/development/python-modules/pandas/default.nix @@ -3,7 +3,6 @@ , buildPythonPackage , fetchPypi , python -, isPy38 , beautifulsoup4 , bottleneck , cython diff --git a/pkgs/development/python-modules/parfive/default.nix b/pkgs/development/python-modules/parfive/default.nix index e551dbb3e765..822ae2113b2a 100644 --- a/pkgs/development/python-modules/parfive/default.nix +++ b/pkgs/development/python-modules/parfive/default.nix @@ -1,19 +1,24 @@ { lib +, aiofiles +, aioftp +, aiohttp , buildPythonPackage , fetchPypi -, tqdm -, aiohttp -, pytest -, setuptools-scm +, pytest-asyncio , pytest-localserver , pytest-socket -, pytest-asyncio -, aioftp +, pytestCheckHook +, pythonOlder +, setuptools-scm +, tqdm }: buildPythonPackage rec { pname = "parfive"; version = "1.5.0"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; @@ -25,27 +30,34 @@ buildPythonPackage rec { ]; propagatedBuildInputs = [ - tqdm - aiohttp aioftp + aiohttp + tqdm ]; checkInputs = [ - pytest + aiofiles + pytest-asyncio pytest-localserver pytest-socket - pytest-asyncio + pytestCheckHook ]; - checkPhase = '' - # these two tests require network connection - pytest parfive -k "not test_ftp and not test_ftp_http" - ''; + disabledTests = [ + # Requires network access + "test_ftp" + "test_ftp_pasv_command" + "test_ftp_http" + ]; + + pythonImportsCheck = [ + "parfive" + ]; meta = with lib; { description = "A HTTP and FTP parallel file downloader"; homepage = "https://parfive.readthedocs.io/"; license = licenses.mit; - maintainers = [ maintainers.costrouc ]; + maintainers = with maintainers; [ costrouc ]; }; } diff --git a/pkgs/development/python-modules/parquet/default.nix b/pkgs/development/python-modules/parquet/default.nix index ceaba917e832..3be0cce9fa4e 100644 --- a/pkgs/development/python-modules/parquet/default.nix +++ b/pkgs/development/python-modules/parquet/default.nix @@ -3,7 +3,6 @@ , fetchFromGitHub , pytestCheckHook , python-snappy -, pythonOlder , thriftpy2 }: diff --git a/pkgs/development/python-modules/parse-type/default.nix b/pkgs/development/python-modules/parse-type/default.nix index 8faff81880cf..5cfb4b610ce7 100644 --- a/pkgs/development/python-modules/parse-type/default.nix +++ b/pkgs/development/python-modules/parse-type/default.nix @@ -3,7 +3,6 @@ , fetchFromGitHub , parse , pytestCheckHook -, pythonOlder , six }: diff --git a/pkgs/development/python-modules/paste/default.nix b/pkgs/development/python-modules/paste/default.nix index c3a082c6c230..53208a35839d 100644 --- a/pkgs/development/python-modules/paste/default.nix +++ b/pkgs/development/python-modules/paste/default.nix @@ -1,7 +1,6 @@ { lib , buildPythonPackage , fetchFromGitHub -, six , pytestCheckHook }: diff --git a/pkgs/development/python-modules/pastel/default.nix b/pkgs/development/python-modules/pastel/default.nix index a8eb5396fa2c..39953306fbb1 100644 --- a/pkgs/development/python-modules/pastel/default.nix +++ b/pkgs/development/python-modules/pastel/default.nix @@ -1,4 +1,4 @@ -{ lib, buildPythonPackage, fetchPypi, poetry, pytest }: +{ lib, buildPythonPackage, fetchPypi, pytest }: buildPythonPackage rec { pname = "pastel"; diff --git a/pkgs/development/python-modules/pathy/default.nix b/pkgs/development/python-modules/pathy/default.nix index 79cbba1d75cd..aba6fdccb327 100644 --- a/pkgs/development/python-modules/pathy/default.nix +++ b/pkgs/development/python-modules/pathy/default.nix @@ -3,9 +3,7 @@ , fetchPypi , pytestCheckHook , typer -, dataclasses , smart-open -, pytest , mock , google-cloud-storage }: diff --git a/pkgs/development/python-modules/pbr/tests.nix b/pkgs/development/python-modules/pbr/tests.nix index a1c57684ce46..b31334589f5d 100644 --- a/pkgs/development/python-modules/pbr/tests.nix +++ b/pkgs/development/python-modules/pbr/tests.nix @@ -1,5 +1,4 @@ -{ stdenv -, buildPythonPackage +{ buildPythonPackage , git , gnupg , pbr diff --git a/pkgs/development/python-modules/pc-ble-driver-py/default.nix b/pkgs/development/python-modules/pc-ble-driver-py/default.nix index 53fbed59dc18..202e6fdaf6a8 100644 --- a/pkgs/development/python-modules/pc-ble-driver-py/default.nix +++ b/pkgs/development/python-modules/pc-ble-driver-py/default.nix @@ -11,7 +11,6 @@ , scikit-build , setuptools , swig -, udev , wrapt }: diff --git a/pkgs/development/python-modules/peewee/default.nix b/pkgs/development/python-modules/peewee/default.nix index fd057d24d31e..852ba5ffbcb7 100644 --- a/pkgs/development/python-modules/peewee/default.nix +++ b/pkgs/development/python-modules/peewee/default.nix @@ -1,50 +1,58 @@ { lib -, buildPythonPackage -, fetchFromGitHub -, sqlite -, cython , apsw +, buildPythonPackage +, cython +, fetchFromGitHub , flask -, withPostgres ? false, psycopg2 -, withMysql ? false, mysql-connector +, python +, sqlite +, withMysql ? false +, mysql-connector +, withPostgres ? false +, psycopg2 }: buildPythonPackage rec { - pname = "peewee"; - version = "3.14.4"; + version = "3.14.8"; + format = "setuptools"; - # pypi release does not provide tests src = fetchFromGitHub { owner = "coleifer"; repo = pname; rev = version; - sha256 = "0x85swpaffysc05kka0mab87cnilzw1lpacfhcx5ayabh0i2qsh6"; + sha256 = "sha256-BJSM+7+VdW6SxN4/AXsX8NhQPdIFoYrVRVwR9OsJ3QE="; }; - - checkInputs = [ flask ]; - - checkPhase = '' - rm -r playhouse # avoid using the folder in the cwd - python runtests.py - ''; - buildInputs = [ sqlite - cython # compile speedups + cython ]; propagatedBuildInputs = [ - apsw # sqlite performance improvement - ] ++ (lib.optional withPostgres psycopg2) - ++ (lib.optional withMysql mysql-connector); + apsw + ] ++ lib.optional withPostgres psycopg2 + ++ lib.optional withMysql mysql-connector; + + checkInputs = [ + flask + ]; doCheck = withPostgres; + checkPhase = '' + rm -r playhouse # avoid using the folder in the cwd + ${python.interpreter} runtests.py + ''; + + pythonImportsCheck = [ + "peewee" + ]; + meta = with lib; { - description = "a small, expressive orm"; - homepage = "http://peewee-orm.com"; - license = licenses.mit; + description = "Python ORM with support for various database implementation"; + homepage = "http://peewee-orm.com"; + license = licenses.mit; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/development/python-modules/pelican/default.nix b/pkgs/development/python-modules/pelican/default.nix index 3f9d2e0ceb0a..e39993194a8c 100644 --- a/pkgs/development/python-modules/pelican/default.nix +++ b/pkgs/development/python-modules/pelican/default.nix @@ -7,7 +7,6 @@ , fetchFromGitHub , git , glibcLocales -, isPy27 , jinja2 , lxml , markdown diff --git a/pkgs/development/python-modules/pendulum/default.nix b/pkgs/development/python-modules/pendulum/default.nix index d432ca271dd7..cdc7ab035ed3 100644 --- a/pkgs/development/python-modules/pendulum/default.nix +++ b/pkgs/development/python-modules/pendulum/default.nix @@ -1,7 +1,6 @@ { lib, fetchPypi, buildPythonPackage, pythonOlder , python-dateutil , importlib-metadata -, poetry , poetry-core , pytzdata , typing diff --git a/pkgs/development/python-modules/pexpect/default.nix b/pkgs/development/python-modules/pexpect/default.nix index 60655708beae..40d61aec5c52 100644 --- a/pkgs/development/python-modules/pexpect/default.nix +++ b/pkgs/development/python-modules/pexpect/default.nix @@ -2,7 +2,6 @@ , buildPythonPackage , fetchPypi , ptyprocess -, isPy3k }: buildPythonPackage (rec { diff --git a/pkgs/development/python-modules/pg8000/default.nix b/pkgs/development/python-modules/pg8000/default.nix index 8b8d2ed488b9..f61a0c593275 100644 --- a/pkgs/development/python-modules/pg8000/default.nix +++ b/pkgs/development/python-modules/pg8000/default.nix @@ -8,12 +8,14 @@ buildPythonPackage rec { pname = "pg8000"; - version = "1.22.0"; + version = "1.23.0"; + format = "setuptools"; + disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "c5172252fc92142ec104cd5e7231be4580a1a0a814403707bafbf7bb8383a29a"; + sha256 = "sha256-pBPgAUE0KBOiykfot7BUn/M4zKAryBkHa21w8S11XHk="; }; propagatedBuildInputs = [ @@ -23,7 +25,10 @@ buildPythonPackage rec { # Tests require a running PostgreSQL instance doCheck = false; - pythonImportsCheck = [ "pg8000" ]; + + pythonImportsCheck = [ + "pg8000" + ]; meta = with lib; { description = "Python driver for PostgreSQL"; diff --git a/pkgs/development/python-modules/phonenumbers/default.nix b/pkgs/development/python-modules/phonenumbers/default.nix index 56d1caa7eaf6..e3fc2424bcd8 100644 --- a/pkgs/development/python-modules/phonenumbers/default.nix +++ b/pkgs/development/python-modules/phonenumbers/default.nix @@ -6,20 +6,25 @@ buildPythonPackage rec { pname = "phonenumbers"; - version = "8.12.36"; + version = "8.12.37"; + format = "setuptools"; src = fetchPypi { inherit pname version; - sha256 = "e29717fcf86d68082fc6e42ca07e52bff863b6e0b354edd1644ba15c35ef213d"; + sha256 = "sha256-28VgmShEoFn1bHwMalh5BOZdlWdAu/t+OViZgLyQVbg="; }; checkInputs = [ pytestCheckHook ]; - pytestFlagsArray = [ "tests/*.py" ]; + pytestFlagsArray = [ + "tests/*.py" + ]; - pythonImportsCheck = [ "phonenumbers" ]; + pythonImportsCheck = [ + "phonenumbers" + ]; meta = with lib; { description = "Python module for handling international phone numbers"; diff --git a/pkgs/development/python-modules/pikepdf/default.nix b/pkgs/development/python-modules/pikepdf/default.nix index ab78f2262445..9f04e68a378f 100644 --- a/pkgs/development/python-modules/pikepdf/default.nix +++ b/pkgs/development/python-modules/pikepdf/default.nix @@ -24,7 +24,7 @@ buildPythonPackage rec { pname = "pikepdf"; - version = "3.2.0"; + version = "4.0.1.post1"; disabled = ! isPy3k; src = fetchFromGitHub { @@ -37,7 +37,7 @@ buildPythonPackage rec { extraPostFetch = '' rm "$out/.git_archival.txt" ''; - sha256 = "03c7ihd6rf6kdfc3cpgxy5pi6cj4zwscz8nyxmmp15fmdk3hkw4g"; + sha256 = "sha256-s7eS7jYGohYt75/r++4v9K6BRfiQ3drdG5wbIL3WoiU="; }; patches = [ diff --git a/pkgs/development/python-modules/pikepdf/paths.patch b/pkgs/development/python-modules/pikepdf/paths.patch index 807041696ad6..17349f7ac209 100644 --- a/pkgs/development/python-modules/pikepdf/paths.patch +++ b/pkgs/development/python-modules/pikepdf/paths.patch @@ -1,16 +1,16 @@ diff --git a/src/pikepdf/_methods.py b/src/pikepdf/_methods.py -index 70cdc9e..c3a14d0 100644 +index 9db6b49..4020bcf 100644 --- a/src/pikepdf/_methods.py +++ b/src/pikepdf/_methods.py -@@ -190,7 +190,7 @@ def _mudraw(buffer, fmt) -> bytes: +@@ -204,7 +204,7 @@ def _mudraw(buffer, fmt) -> bytes: tmp_in.flush() proc = run( - ['mudraw', '-F', fmt, '-o', '-', tmp_in.name], + ['@mudraw@', '-F', fmt, '-o', '-', tmp_in.name], - stdout=PIPE, - stderr=PIPE, + capture_output=True, check=True, + ) diff --git a/src/pikepdf/jbig2.py b/src/pikepdf/jbig2.py index 80cc910..64f6d31 100644 --- a/src/pikepdf/jbig2.py diff --git a/pkgs/development/python-modules/pip-tools/default.nix b/pkgs/development/python-modules/pip-tools/default.nix index 1cda1fd87523..62bab6694d79 100644 --- a/pkgs/development/python-modules/pip-tools/default.nix +++ b/pkgs/development/python-modules/pip-tools/default.nix @@ -3,13 +3,10 @@ , pythonOlder , buildPythonPackage , pip -, pytest +, pytestCheckHook , pytest-xdist , click , setuptools-scm -, git -, glibcLocales -, mock , pep517 }: @@ -24,14 +21,26 @@ buildPythonPackage rec { sha256 = "992d968df6f1a19d4d37c53b68b3d4b601b894fb3ee0926d1fa762ebc7c7e9e9"; }; - LC_ALL = "en_US.UTF-8"; - checkInputs = [ pytest git glibcLocales mock pytest-xdist ]; - propagatedBuildInputs = [ pip click setuptools-scm pep517 ]; + checkInputs = [ + pytestCheckHook + pytest-xdist + ]; - checkPhase = '' - export HOME=$(mktemp -d) VIRTUAL_ENV=1 - py.test -m "not network" - ''; + nativeBuildInputs = [ + setuptools-scm + ]; + + propagatedBuildInputs = [ + click + pep517 + pip + ]; + + disabledTests = [ + # these want internet access + "network" + "test_direct_reference_with_extras" + ]; meta = with lib; { description = "Keeps your pinned dependencies fresh"; diff --git a/pkgs/development/python-modules/pip/20.nix b/pkgs/development/python-modules/pip/20.nix index 6f859d365c59..e3666d6a7961 100644 --- a/pkgs/development/python-modules/pip/20.nix +++ b/pkgs/development/python-modules/pip/20.nix @@ -1,5 +1,4 @@ { lib -, python , buildPythonPackage , bootstrapped-pip , fetchFromGitHub @@ -8,8 +7,6 @@ , virtualenv , pretend , pytest -, setuptools -, wheel }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/pip/default.nix b/pkgs/development/python-modules/pip/default.nix index 50783f4eeb62..fc447bfb98a0 100644 --- a/pkgs/development/python-modules/pip/default.nix +++ b/pkgs/development/python-modules/pip/default.nix @@ -1,5 +1,4 @@ { lib -, python , buildPythonPackage , bootstrapped-pip , fetchFromGitHub @@ -8,8 +7,6 @@ , virtualenv , pretend , pytest -, setuptools -, wheel }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/plyer/default.nix b/pkgs/development/python-modules/plyer/default.nix index 88dfd9a4a2bf..aed8b9395f06 100644 --- a/pkgs/development/python-modules/plyer/default.nix +++ b/pkgs/development/python-modules/plyer/default.nix @@ -1,4 +1,4 @@ -{ lib, buildPythonPackage, fetchFromGitHub, fetchpatch, keyring, mock, pytestCheckHook, stdenv }: +{ lib, buildPythonPackage, fetchFromGitHub, fetchpatch, keyring, mock, pytestCheckHook }: buildPythonPackage rec { pname = "plyer"; diff --git a/pkgs/development/python-modules/policyuniverse/default.nix b/pkgs/development/python-modules/policyuniverse/default.nix index d8e102957b1b..ca66c777f5b0 100644 --- a/pkgs/development/python-modules/policyuniverse/default.nix +++ b/pkgs/development/python-modules/policyuniverse/default.nix @@ -1,7 +1,6 @@ { lib , buildPythonPackage , fetchPypi -, pytestCheckHook , pythonOlder }: diff --git a/pkgs/development/python-modules/protobuf/default.nix b/pkgs/development/python-modules/protobuf/default.nix index e3e66294a8f5..db3b73d7462f 100644 --- a/pkgs/development/python-modules/protobuf/default.nix +++ b/pkgs/development/python-modules/protobuf/default.nix @@ -8,7 +8,6 @@ , google-apputils ? null , six , pyext -, libcxx , isPy27 , disabled , doCheck ? true diff --git a/pkgs/development/python-modules/prov/default.nix b/pkgs/development/python-modules/prov/default.nix index 9844b018518b..101ea7e2e939 100644 --- a/pkgs/development/python-modules/prov/default.nix +++ b/pkgs/development/python-modules/prov/default.nix @@ -28,8 +28,15 @@ buildPythonPackage rec { pydot ]; + # Multiple tests are out-dated and failing + doCheck = false; + + pythonImportsCheck = [ + "prov" + ]; + meta = with lib; { - description = "A Python library for W3C Provenance Data Model (PROV)"; + description = "Python library for W3C Provenance Data Model (PROV)"; homepage = "https://github.com/trungdong/prov"; license = licenses.mit; maintainers = with maintainers; [ ashgillman ]; diff --git a/pkgs/development/python-modules/publicsuffix/default.nix b/pkgs/development/python-modules/publicsuffix/default.nix index 997bc31c8656..3f86abf0ea14 100644 --- a/pkgs/development/python-modules/publicsuffix/default.nix +++ b/pkgs/development/python-modules/publicsuffix/default.nix @@ -1,4 +1,4 @@ -{ lib, buildPythonPackage, fetchPypi, isPy3k }: +{ lib, buildPythonPackage, fetchPypi }: buildPythonPackage rec { pname = "publicsuffix"; diff --git a/pkgs/development/python-modules/pxml/default.nix b/pkgs/development/python-modules/pxml/default.nix index 21dc2f4abc4d..efa9e81b8de9 100644 --- a/pkgs/development/python-modules/pxml/default.nix +++ b/pkgs/development/python-modules/pxml/default.nix @@ -1,6 +1,5 @@ { lib , pythonAtLeast -, isPy27 , buildPythonPackage , fetchPypi , blessings diff --git a/pkgs/development/python-modules/py3exiv2/default.nix b/pkgs/development/python-modules/py3exiv2/default.nix index 59d0cdb7299f..ef056d296b2e 100644 --- a/pkgs/development/python-modules/py3exiv2/default.nix +++ b/pkgs/development/python-modules/py3exiv2/default.nix @@ -1,4 +1,4 @@ -{ lib, buildPythonPackage, isPy3k, fetchPypi, stdenv, exiv2, boost, libcxx, substituteAll, python }: +{ lib, buildPythonPackage, isPy3k, fetchPypi, stdenv, exiv2, boost, libcxx }: buildPythonPackage rec { pname = "py3exiv2"; diff --git a/pkgs/development/python-modules/pyaftership/default.nix b/pkgs/development/python-modules/pyaftership/default.nix index 6253d9511183..c0b941e849d1 100644 --- a/pkgs/development/python-modules/pyaftership/default.nix +++ b/pkgs/development/python-modules/pyaftership/default.nix @@ -1,9 +1,8 @@ { lib , buildPythonPackage , fetchFromGitHub -, isPy3k +, pythonOlder , aiohttp -, async-timeout , aresponses , pytest-asyncio , pytestCheckHook @@ -11,21 +10,38 @@ buildPythonPackage rec { pname = "pyaftership"; - version = "21.1.0"; + version = "21.11.0"; + format = "setuptools"; - disabled = !isPy3k; + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "ludeeus"; repo = pname; rev = version; - sha256 = "0jyzgwaijkp80whi58a0hgjzmnlczmd9vwn11z2m0j01kbdwznn5"; + sha256 = "sha256-SN7fvI/+VHYn2eYQe5wp6lEZ73YeZbsiPjDiq/Ibk3Q="; }; - propagatedBuildInputs = [ aiohttp async-timeout ]; + propagatedBuildInputs = [ + aiohttp + ]; - checkInputs = [ pytestCheckHook aresponses pytest-asyncio ]; - pythonImportsCheck = [ "pyaftership" ]; + checkInputs = [ + aresponses + pytest-asyncio + pytestCheckHook + ]; + + postPatch = '' + # Upstream is releasing with the help of a CI to PyPI, GitHub releases + # are not in their focus + substituteInPlace setup.py \ + --replace 'version="main",' 'version="${version}",' + ''; + + pythonImportsCheck = [ + "pyaftership" + ]; meta = with lib; { description = "Python wrapper package for the AfterShip API"; diff --git a/pkgs/development/python-modules/pyairvisual/default.nix b/pkgs/development/python-modules/pyairvisual/default.nix index fadb3f58d509..c4db96bca759 100644 --- a/pkgs/development/python-modules/pyairvisual/default.nix +++ b/pkgs/development/python-modules/pyairvisual/default.nix @@ -15,19 +15,21 @@ buildPythonPackage rec { pname = "pyairvisual"; - version = "5.0.9"; + version = "2021.10.0"; format = "pyproject"; - disabled = pythonOlder "3.6"; + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "bachya"; repo = pname; rev = version; - sha256 = "1jfbwnipklpgxjgsgsx4j53anbqyrbgvj0wb84fvsm32jq9m8avf"; + sha256 = "sha256-Wj+ReRTYsP/XMrr74XPHrkHYT0sXfqcW/shbG3zNuH0="; }; - nativeBuildInputs = [ poetry-core ]; + nativeBuildInputs = [ + poetry-core + ]; propagatedBuildInputs = [ aiohttp @@ -43,9 +45,14 @@ buildPythonPackage rec { pytestCheckHook ]; - disabledTestPaths = [ "examples/" ]; + disabledTestPaths = [ + # Ignore the examples directory as the files are prefixed with test_. + "examples/" + ]; - pythonImportsCheck = [ "pyairvisual" ]; + pythonImportsCheck = [ + "pyairvisual" + ]; meta = with lib; { description = "Python library for interacting with AirVisual"; diff --git a/pkgs/development/python-modules/pyathena/default.nix b/pkgs/development/python-modules/pyathena/default.nix index c7a8599a048a..6bfd68286b7e 100644 --- a/pkgs/development/python-modules/pyathena/default.nix +++ b/pkgs/development/python-modules/pyathena/default.nix @@ -1,7 +1,6 @@ { lib , buildPythonPackage , fetchPypi -, sqlalchemy , boto3 , botocore , pandas diff --git a/pkgs/development/python-modules/pybalboa/default.nix b/pkgs/development/python-modules/pybalboa/default.nix new file mode 100644 index 000000000000..3c290b843941 --- /dev/null +++ b/pkgs/development/python-modules/pybalboa/default.nix @@ -0,0 +1,34 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, pythonOlder +}: + +buildPythonPackage rec { + pname = "pybalboa"; + version = "0.13"; + format = "setuptools"; + + disabled = pythonOlder "3.8"; + + src = fetchFromGitHub { + owner = "garbled1"; + repo = pname; + rev = version; + sha256 = "0aw5jxpsvzyx05y1mg8d63lxx1i607yb6x19n9jil5wfis95m8pd"; + }; + + # Project has no tests + doCheck = false; + + pythonImportsCheck = [ + "pybalboa" + ]; + + meta = with lib; { + description = " Python module to interface with a Balboa Spa"; + homepage = "https://github.com/garbled1/pybalboa"; + license = licenses.asl20; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/pycfdns/default.nix b/pkgs/development/python-modules/pycfdns/default.nix index ca0b0fe5ecf0..7a4ae1cf7fa4 100644 --- a/pkgs/development/python-modules/pycfdns/default.nix +++ b/pkgs/development/python-modules/pycfdns/default.nix @@ -7,13 +7,14 @@ buildPythonPackage rec { pname = "pycfdns"; - version = "1.2.1"; + version = "1.2.2"; + format = "setuptools"; src = fetchFromGitHub { owner = "ludeeus"; repo = pname; rev = version; - sha256 = "0df4695cb0h6f2lnn6dx4h5al2ra93zp1hzfaz07nj2gvirswp83"; + sha256 = "sha256-bsalfZEkZrBG0/SyEXCWOZyrhOYU/3YJR/78FQTpXYk="; }; propagatedBuildInputs = [ @@ -23,7 +24,10 @@ buildPythonPackage rec { # Project has no tests doCheck = false; - pythonImportsCheck = [ "pycfdns" ]; + + pythonImportsCheck = [ + "pycfdns" + ]; meta = with lib; { description = "Python module for updating Cloudflare DNS A records"; diff --git a/pkgs/development/python-modules/pyefergy/default.nix b/pkgs/development/python-modules/pyefergy/default.nix index 042b6a858fa4..007e605709c3 100644 --- a/pkgs/development/python-modules/pyefergy/default.nix +++ b/pkgs/development/python-modules/pyefergy/default.nix @@ -3,14 +3,13 @@ , buildPythonPackage , fetchFromGitHub , iso4217 -, pytestCheckHook , pythonOlder , pytz }: buildPythonPackage rec { pname = "pyefergy"; - version = "0.1.0"; + version = "0.1.3"; format = "setuptools"; disabled = pythonOlder "3.8"; @@ -19,7 +18,7 @@ buildPythonPackage rec { owner = "tkdrob"; repo = pname; rev = version; - sha256 = "0nm7dc5q4wvdpqxpirlc4nwm68lf3n2df6j5yy4m8wr294yb7a1k"; + sha256 = "sha256-TGvS/ntIRbkcMsD5y0QdqyLE2dcPUbX3d79jHc3ddd0="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pyemby/default.nix b/pkgs/development/python-modules/pyemby/default.nix index 81c015df35cb..d197b62b21e9 100644 --- a/pkgs/development/python-modules/pyemby/default.nix +++ b/pkgs/development/python-modules/pyemby/default.nix @@ -7,13 +7,13 @@ buildPythonPackage rec { pname = "pyemby"; - version = "1.7"; + version = "1.8"; src = fetchFromGitHub { owner = "mezz64"; repo = pname; rev = version; - sha256 = "04fvpv3fz4q160s4ikldwxflxl1zbxgfgy9qs6grgpnd23p0ylk8"; + sha256 = "sha256-EpmXdyKtfb/M8rTv6YrfNCpDmKei2AD5DBcdVvqCVWw="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pyerfa/default.nix b/pkgs/development/python-modules/pyerfa/default.nix index 26a61ddca540..b59aa56c48e9 100644 --- a/pkgs/development/python-modules/pyerfa/default.nix +++ b/pkgs/development/python-modules/pyerfa/default.nix @@ -1,7 +1,7 @@ { lib , buildPythonPackage , fetchPypi -, isPy3k +, setuptools-scm , liberfa , packaging , numpy @@ -10,17 +10,25 @@ buildPythonPackage rec { pname = "pyerfa"; format = "pyproject"; - version = "1.7.1.1"; + version = "2.0.0"; doCheck = false; src = fetchPypi { inherit pname version; - sha256 = "09i2qcsvxd3q04a5yaf6fwzg79paaslpksinan9d8smj7viql15i"; + sha256 = "sha256-+QQjHhpXD5REDgYUB5lZCJUQf5QoR7UqdTzoHJYJFi0="; }; - nativeBuildInputs = [ packaging ]; - propagatedBuildInputs = [ liberfa numpy ]; + nativeBuildInputs = [ + packaging + setuptools-scm + ]; + + propagatedBuildInputs = [ + liberfa + numpy + ]; + preBuild = '' export PYERFA_USE_SYSTEM_LIBERFA=1 ''; diff --git a/pkgs/development/python-modules/pygame/default.nix b/pkgs/development/python-modules/pygame/default.nix index 7ae4c96702ad..39ecf7af4a52 100644 --- a/pkgs/development/python-modules/pygame/default.nix +++ b/pkgs/development/python-modules/pygame/default.nix @@ -1,15 +1,17 @@ -{ stdenv, lib, substituteAll, fetchPypi, buildPythonPackage, python, pkg-config, libX11 +{ stdenv, lib, substituteAll, fetchFromGitHub, buildPythonPackage, python, pkg-config, libX11 , SDL2, SDL2_image, SDL2_mixer, SDL2_ttf, libpng, libjpeg, portmidi, freetype, fontconfig -, AppKit, CoreMIDI +, AppKit }: buildPythonPackage rec { pname = "pygame"; - version = "2.0.1"; + version = "2.1.0"; - src = fetchPypi { - inherit pname version; - sha256 = "8b1e7b63f47aafcdd8849933b206778747ef1802bd3d526aca45ed77141e4001"; + src = fetchFromGitHub { + owner = pname; + repo = pname; + rev = version; + sha256 = "GrfNaowlD2L5umiFwj7DgtHGBg9a4WVfe3RlMjK3ElU="; }; patches = [ @@ -41,11 +43,11 @@ buildPythonPackage rec { SDL2 SDL2_image SDL2_mixer SDL2_ttf libpng libjpeg portmidi libX11 freetype ] ++ lib.optionals stdenv.isDarwin [ - AppKit CoreMIDI + AppKit ]; preConfigure = '' - LOCALBASE=/ ${python.interpreter} buildconfig/config.py + ${python.interpreter} buildconfig/config.py ''; checkPhase = '' diff --git a/pkgs/development/python-modules/pygame/fix-dependency-finding.patch b/pkgs/development/python-modules/pygame/fix-dependency-finding.patch index 11b705f1b1ad..a756cb8e5d6b 100644 --- a/pkgs/development/python-modules/pygame/fix-dependency-finding.patch +++ b/pkgs/development/python-modules/pygame/fix-dependency-finding.patch @@ -1,29 +1,13 @@ diff --git a/buildconfig/config_darwin.py b/buildconfig/config_darwin.py -index 8d84683f..70df8f9c 100644 +index c785e183..37d5cea4 100644 --- a/buildconfig/config_darwin.py +++ b/buildconfig/config_darwin.py -@@ -56,10 +56,10 @@ class Dependency: - class FrameworkDependency(Dependency): - def configure(self, incdirs, libdirs): - BASE_DIRS = '/', os.path.expanduser('~/'), '/System/' -- for n in BASE_DIRS: -+ for n in incdirs + libdirs: - n += 'Library/Frameworks/' - fmwk = n + self.libs + '.framework/Versions/Current/' -- if os.path.isfile(fmwk + self.libs): -+ if os.path.isfile(fmwk + self.libs + '.tbd'): - print ('Framework ' + self.libs + ' found') - self.found = 1 - self.inc_dir = fmwk + 'Headers' -@@ -158,19 +158,8 @@ def main(sdl2=False): +@@ -146,16 +146,8 @@ def main(): ]) print ('Hunting dependencies...') -- incdirs = ['/usr/local/include'] -- if sdl2: -- incdirs.append('/usr/local/include/SDL2') -- else: -- incdirs.append('/usr/local/include/SDL') +- incdirs = ['/usr/local/include', '/opt/homebrew/include'] +- incdirs.extend(['/usr/local/include/SDL2', '/opt/homebrew/include/SDL2', '/opt/local/include/SDL2']) - - incdirs.extend([ - #'/usr/X11/include', @@ -31,17 +15,17 @@ index 8d84683f..70df8f9c 100644 - '/opt/local/include/freetype2/freetype'] - ) - #libdirs = ['/usr/local/lib', '/usr/X11/lib', '/opt/local/lib'] -- libdirs = ['/usr/local/lib', '/opt/local/lib'] +- libdirs = ['/usr/local/lib', '/opt/local/lib', '/opt/homebrew/lib'] + incdirs = @buildinputs_include@ + libdirs = @buildinputs_lib@ for d in DEPS: if isinstance(d, (list, tuple)): diff --git a/buildconfig/config_unix.py b/buildconfig/config_unix.py -index f6a4ea4b..f7f5be76 100644 +index 5c50bcdc..2fd69e2d 100644 --- a/buildconfig/config_unix.py +++ b/buildconfig/config_unix.py -@@ -224,18 +224,8 @@ def main(sdl2=False): +@@ -210,18 +210,8 @@ def main(): if not DEPS[0].found: raise RuntimeError('Unable to run "sdl-config". Please make sure a development version of SDL is installed.') diff --git a/pkgs/development/python-modules/pygls/default.nix b/pkgs/development/python-modules/pygls/default.nix index d29ea2658c5a..1ce36111ff78 100644 --- a/pkgs/development/python-modules/pygls/default.nix +++ b/pkgs/development/python-modules/pygls/default.nix @@ -12,14 +12,14 @@ buildPythonPackage rec { pname = "pygls"; - version = "0.11.2"; + version = "0.11.3"; disabled = !isPy3k; src = fetchFromGitHub { owner = "openlawlibrary"; repo = pname; rev = "v${version}"; - sha256 = "sha256-zgQ5m198HMyFFrASSYCzn0EDLLeVy2j4LD0rEyEgahQ="; + sha256 = "sha256-/nmDaA67XzrrmfwlBm5syTS4hn25m30Zb3gvOdL+bR8="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; diff --git a/pkgs/development/python-modules/pygobject/3.nix b/pkgs/development/python-modules/pygobject/3.nix index fda11ef89e83..dec84b4eccff 100644 --- a/pkgs/development/python-modules/pygobject/3.nix +++ b/pkgs/development/python-modules/pygobject/3.nix @@ -7,7 +7,6 @@ , gobject-introspection , pycairo , cairo -, which , ncurses , meson , ninja diff --git a/pkgs/development/python-modules/pygogo/default.nix b/pkgs/development/python-modules/pygogo/default.nix index 89031c9610aa..8af5e856c41f 100644 --- a/pkgs/development/python-modules/pygogo/default.nix +++ b/pkgs/development/python-modules/pygogo/default.nix @@ -4,7 +4,6 @@ , fetchFromGitHub , pkutils # Check Inputs -, pytestCheckHook , nose }: diff --git a/pkgs/development/python-modules/pyiqvia/default.nix b/pkgs/development/python-modules/pyiqvia/default.nix index 89df38b80c50..7f72c226dd82 100644 --- a/pkgs/development/python-modules/pyiqvia/default.nix +++ b/pkgs/development/python-modules/pyiqvia/default.nix @@ -13,16 +13,16 @@ buildPythonPackage rec { pname = "pyiqvia"; - version = "1.1.0"; + version = "2021.10.0"; format = "pyproject"; - disabled = pythonOlder "3.6"; + disabled = pythonOlder "3.8"; src = fetchFromGitHub { owner = "bachya"; repo = pname; rev = version; - sha256 = "sha256-uDcBpPHh+wQHI2vGjnumwVGt5ZOreVq+L3kOam97uW4="; + sha256 = "sha256-FCavSy33fkXlboRAmGr0BkEkXLTOzsyGXQkws0LqiJk="; }; nativeBuildInputs = [ @@ -41,10 +41,14 @@ buildPythonPackage rec { pytestCheckHook ]; - # Ignore the examples as they are prefixed with test_ - disabledTestPaths = [ "examples/" ]; + disabledTestPaths = [ + # Ignore the examples as they are prefixed with test_ + "examples/" + ]; - pythonImportsCheck = [ "pyiqvia" ]; + pythonImportsCheck = [ + "pyiqvia" + ]; meta = with lib; { description = "Python3 API for IQVIA data"; diff --git a/pkgs/development/python-modules/pyjet/default.nix b/pkgs/development/python-modules/pyjet/default.nix index 90eea80ae3d9..608bacf06765 100644 --- a/pkgs/development/python-modules/pyjet/default.nix +++ b/pkgs/development/python-modules/pyjet/default.nix @@ -1,4 +1,4 @@ -{ lib, buildPythonPackage, fetchFromGitHub, cython, pytest, numpy }: +{ lib, buildPythonPackage, pythonOlder, fetchFromGitHub, cython, pytest, importlib-resources, numpy }: buildPythonPackage rec { pname = "pyjet"; @@ -13,7 +13,11 @@ buildPythonPackage rec { }; nativeBuildInputs = [ cython ]; - propagatedBuildInputs = [ numpy ]; + propagatedBuildInputs = [ + numpy + ] ++ lib.optionals (pythonOlder "3.9") [ + importlib-resources + ]; checkInputs = [ pytest ]; checkPhase = '' diff --git a/pkgs/development/python-modules/pykrakenapi/default.nix b/pkgs/development/python-modules/pykrakenapi/default.nix index e3620e7de6ad..5a17e40be564 100644 --- a/pkgs/development/python-modules/pykrakenapi/default.nix +++ b/pkgs/development/python-modules/pykrakenapi/default.nix @@ -3,7 +3,6 @@ , fetchFromGitHub , krakenex , pandas -, pytestCheckHook }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/pylaunches/default.nix b/pkgs/development/python-modules/pylaunches/default.nix new file mode 100644 index 000000000000..d6ad5480ddd3 --- /dev/null +++ b/pkgs/development/python-modules/pylaunches/default.nix @@ -0,0 +1,52 @@ +{ lib +, aiohttp +, aresponses +, buildPythonPackage +, fetchFromGitHub +, pytestCheckHook +, pytest-asyncio +, pythonOlder +}: + +buildPythonPackage rec { + pname = "pylaunches"; + version = "1.2.0"; + format = "setuptools"; + + disabled = pythonOlder "3.8"; + + src = fetchFromGitHub { + owner = "ludeeus"; + repo = pname; + rev = version; + sha256 = "0mczxkwczyh9kva4xzpmnawy0hjha1fdrwj6igip9w5z1q48zs49"; + }; + + propagatedBuildInputs = [ + aiohttp + ]; + + checkInputs = [ + aresponses + pytestCheckHook + pytest-asyncio + ]; + + postPatch = '' + # Upstream doesn't set version in the repo + substituteInPlace setup.py \ + --replace 'version="main",' 'version="${version}",' \ + --replace ', "pytest-runner"' "" + ''; + + pythonImportsCheck = [ + "pylaunches" + ]; + + meta = with lib; { + description = "Python module to get information about upcoming space launches"; + homepage = "https://github.com/ludeeus/pylaunches"; + license = licenses.mit; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/pylitterbot/default.nix b/pkgs/development/python-modules/pylitterbot/default.nix index ac4531328fcf..50afee3058cc 100644 --- a/pkgs/development/python-modules/pylitterbot/default.nix +++ b/pkgs/development/python-modules/pylitterbot/default.nix @@ -11,14 +11,14 @@ buildPythonPackage rec { pname = "pylitterbot"; - version = "2021.9.0"; + version = "2021.10.1"; disabled = pythonOlder "3.6"; src = fetchFromGitHub { owner = "natekspencer"; repo = pname; rev = version; - sha256 = "sha256-S25x9k6vBwnmJq15y5PVUWaTujT9UNHvgIX9uH+N8dY="; + sha256 = "sha256-xE+H23AZR1OXfuLMvSuI7IeYKX7k2iEATHq5VheMLn4="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pymarshal/default.nix b/pkgs/development/python-modules/pymarshal/default.nix new file mode 100644 index 000000000000..0da93a6d8a43 --- /dev/null +++ b/pkgs/development/python-modules/pymarshal/default.nix @@ -0,0 +1,51 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, pythonOlder +, bson +, pytest +, pytest-cov +, pytest-runner +, pytestCheckHook +, pyyaml +, setuptools +}: + +buildPythonPackage rec { + pname = "pymarshal"; + version = "2.2.0"; + disabled = pythonOlder "3.0"; + + src = fetchFromGitHub { + owner = "stargateaudio"; + repo = pname; + rev = version; + sha256 = "sha256-Ds8JV2mtLRcKXBvPs84Hdj3MxxqpeV5muKCSlAFCj1A="; + }; + + nativeBuildInputs = [ + setuptools + pytest-runner + ]; + + propagatedBuildInputs = [ + bson + ]; + + checkInputs = [ + pytestCheckHook + bson + pytest + pytest-cov + pyyaml + ]; + + pytestFlagsArray = [ "test" ]; + + meta = { + description = "Python data serialization library"; + homepage = "https://github.com/stargateaudio/pymarshal"; + maintainers = with lib.maintainers; [ yuu ]; + license = lib.licenses.bsd2; + }; +} diff --git a/pkgs/development/python-modules/pymazda/default.nix b/pkgs/development/python-modules/pymazda/default.nix index 179202da8dff..f6fdd60a3872 100644 --- a/pkgs/development/python-modules/pymazda/default.nix +++ b/pkgs/development/python-modules/pymazda/default.nix @@ -8,12 +8,12 @@ buildPythonPackage rec { pname = "pymazda"; - version = "0.2.2"; + version = "0.3.0"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "sha256-nngYdoVY3rXfszoCpUWFtJ0U0Rjczxix/wJDOZD+2O4="; + sha256 = "sha256-D0odz4GkKvjuafhEGlHtRnO8lk4rV9y3imaHl7jXqJw="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pymetno/default.nix b/pkgs/development/python-modules/pymetno/default.nix index 0115893700ac..f3dcdf6c45a7 100644 --- a/pkgs/development/python-modules/pymetno/default.nix +++ b/pkgs/development/python-modules/pymetno/default.nix @@ -9,14 +9,14 @@ buildPythonPackage rec { pname = "pymetno"; - version = "0.8.3"; + version = "0.9.0"; format = "setuptools"; src = fetchFromGitHub { owner = "Danielhiversen"; repo = "PyMetno"; rev = version; - sha256 = "sha256-dvZz+wv9B07yKM4E4fQ9VQOgeil9KxZxcGk6D0kWY4g="; + sha256 = "sha256-2LNDFQObGqxrzswnqbmvCGLxEI0j+cIdv8o+RZM/7sM="; }; propagatedBuildInputs = [ @@ -30,7 +30,7 @@ buildPythonPackage rec { "metno" ]; - # no tests + # Project has no tests doCheck = false; meta = with lib; { diff --git a/pkgs/development/python-modules/pymumble/default.nix b/pkgs/development/python-modules/pymumble/default.nix index d708f5f229b5..35cbbc31bb02 100644 --- a/pkgs/development/python-modules/pymumble/default.nix +++ b/pkgs/development/python-modules/pymumble/default.nix @@ -1,6 +1,5 @@ { buildPythonPackage , fetchFromGitHub -, fetchpatch , isPy27 , lib , opuslib diff --git a/pkgs/development/python-modules/pymysensors/default.nix b/pkgs/development/python-modules/pymysensors/default.nix index 24d7d4c28266..1deb464ea633 100644 --- a/pkgs/development/python-modules/pymysensors/default.nix +++ b/pkgs/development/python-modules/pymysensors/default.nix @@ -17,14 +17,16 @@ buildPythonPackage rec { pname = "pymysensors"; - version = "0.21.0"; + version = "0.22.0"; + format = "setuptools"; + disabled = pythonOlder "3.6"; src = fetchFromGitHub { owner = "theolind"; repo = pname; rev = version; - sha256 = "1k75gwvyzslyjr3cdx8b74fb302k2i7bda4q92rb75rhgp4gch55"; + sha256 = "sha256-tDetHSpA5ZRvJoThI1zY6NPiDJHfWZbiMM5AF+xCNgk="; }; propagatedBuildInputs = [ @@ -44,7 +46,9 @@ buildPythonPackage rec { pytestCheckHook ]; - pythonImportsCheck = [ "mysensors" ]; + pythonImportsCheck = [ + "mysensors" + ]; meta = with lib; { description = "Python API for talking to a MySensors gateway"; diff --git a/pkgs/development/python-modules/pynest2d/default.nix b/pkgs/development/python-modules/pynest2d/default.nix index 5d6a006634e2..1f338806a18f 100644 --- a/pkgs/development/python-modules/pynest2d/default.nix +++ b/pkgs/development/python-modules/pynest2d/default.nix @@ -1,5 +1,5 @@ { lib, buildPythonPackage, fetchFromGitHub, python3, cmake -, pythonOlder, libnest2d, sip_4, clipper }: +, libnest2d, sip_4, clipper }: buildPythonPackage rec { version = "4.10.0"; diff --git a/pkgs/development/python-modules/pynrrd/default.nix b/pkgs/development/python-modules/pynrrd/default.nix index 7a136176cf64..641cd6bd1280 100644 --- a/pkgs/development/python-modules/pynrrd/default.nix +++ b/pkgs/development/python-modules/pynrrd/default.nix @@ -2,7 +2,6 @@ , buildPythonPackage , fetchFromGitHub , numpy -, pytest }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/pynvim/default.nix b/pkgs/development/python-modules/pynvim/default.nix index 67079a8c1d26..6ae98eff28d3 100644 --- a/pkgs/development/python-modules/pynvim/default.nix +++ b/pkgs/development/python-modules/pynvim/default.nix @@ -1,7 +1,6 @@ { buildPythonPackage , fetchPypi , lib -, nose , msgpack , greenlet , pythonOlder diff --git a/pkgs/development/python-modules/pyocr/default.nix b/pkgs/development/python-modules/pyocr/default.nix index df20d3bb6c47..b8f9564a4ffe 100644 --- a/pkgs/development/python-modules/pyocr/default.nix +++ b/pkgs/development/python-modules/pyocr/default.nix @@ -9,7 +9,6 @@ , isPy3k , substituteAll , pytestCheckHook -, tox }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/pyopencl/default.nix b/pkgs/development/python-modules/pyopencl/default.nix index c19e571a9cc8..c5c7c6b2fb74 100644 --- a/pkgs/development/python-modules/pyopencl/default.nix +++ b/pkgs/development/python-modules/pyopencl/default.nix @@ -21,7 +21,7 @@ let if stdenv.isDarwin then [ mesa_drivers.dev ] else [ ocl-icd ]; in buildPythonPackage rec { pname = "pyopencl"; - version = "2021.2.8"; + version = "2021.2.9"; checkInputs = [ pytest ]; buildInputs = [ opencl-headers pybind11 ] ++ os-specific-buildInputs; @@ -30,7 +30,7 @@ in buildPythonPackage rec { src = fetchPypi { inherit pname version; - sha256 = "15809b5d2b9a86ad01e31d176c00415436805ac884c4d197d9263bfe98280d76"; + sha256 = "51425e65ec49c738eefe21b1eeb1f39245b01cc0ddfd495fbe1f8df33dbc6c9e"; }; # py.test is not needed during runtime, so remove it from `install_requires` diff --git a/pkgs/development/python-modules/pyopenssl/default.nix b/pkgs/development/python-modules/pyopenssl/default.nix index 6bc8c04ec30c..688731033a98 100644 --- a/pkgs/development/python-modules/pyopenssl/default.nix +++ b/pkgs/development/python-modules/pyopenssl/default.nix @@ -11,7 +11,6 @@ , flaky , glibcLocales , six -, fetchpatch }: let diff --git a/pkgs/development/python-modules/pyopenuv/default.nix b/pkgs/development/python-modules/pyopenuv/default.nix index f30f3758f31b..edd34c237d20 100644 --- a/pkgs/development/python-modules/pyopenuv/default.nix +++ b/pkgs/development/python-modules/pyopenuv/default.nix @@ -8,23 +8,27 @@ , poetry-core , pytest-aiohttp , pytest-asyncio -, pytest-cov , pytestCheckHook +, pythonOlder }: buildPythonPackage rec { pname = "pyopenuv"; - version = "2.2.1"; + version = "2021.10.0"; format = "pyproject"; + disabled = pythonOlder "3.6"; + src = fetchFromGitHub { owner = "bachya"; repo = pname; rev = version; - sha256 = "sha256-9hpXVKCpVbUAoTxd5mHP9NK1dZxbrQUxrQrOEVHpaPo="; + sha256 = "sha256-3zTyW3eXOA9frSAy4g7iWhymc1hBo0hrxIgPLMqrLTs="; }; - nativeBuildInputs = [ poetry-core ]; + nativeBuildInputs = [ + poetry-core + ]; propagatedBuildInputs = [ aiohttp @@ -36,13 +40,18 @@ buildPythonPackage rec { asynctest pytest-asyncio pytest-aiohttp - pytest-cov pytestCheckHook ]; # Ignore the examples as they are prefixed with test_ - pytestFlagsArray = [ "--ignore examples/" ]; - pythonImportsCheck = [ "pyopenuv" ]; + disabledTestPaths = [ + # Ignore the examples as they are prefixed with test_ + "examples/" + ]; + + pythonImportsCheck = [ + "pyopenuv" + ]; meta = with lib; { description = "Python API to retrieve data from openuv.io"; diff --git a/pkgs/development/python-modules/pyppeteer/default.nix b/pkgs/development/python-modules/pyppeteer/default.nix index 37a40f867bda..153be45ca8f5 100644 --- a/pkgs/development/python-modules/pyppeteer/default.nix +++ b/pkgs/development/python-modules/pyppeteer/default.nix @@ -2,6 +2,7 @@ , appdirs , buildPythonPackage , fetchFromGitHub +, importlib-metadata , poetry-core , pyee , pytest-xdist @@ -16,9 +17,10 @@ buildPythonPackage rec { pname = "pyppeteer"; version = "0.2.6"; - disabled = pythonOlder "3.6"; format = "pyproject"; + disabled = pythonOlder "3.6"; + src = fetchFromGitHub { owner = pname; repo = pname; @@ -32,6 +34,7 @@ buildPythonPackage rec { propagatedBuildInputs = [ appdirs + importlib-metadata pyee tqdm urllib3 @@ -44,6 +47,11 @@ buildPythonPackage rec { pytestCheckHook ]; + postPatch = '' + substituteInPlace pyproject.toml \ + --replace 'websockets = "^9.1"' 'websockets = "*"' + ''; + disabledTestPaths = [ # Requires network access "tests/test_browser.py" @@ -71,12 +79,14 @@ buildPythonPackage rec { "TestPDF" ]; - pythonImportsCheck = [ "pyppeteer" ]; + pythonImportsCheck = [ + "pyppeteer" + ]; - meta = { + meta = with lib; { description = "Headless chrome/chromium automation library (unofficial port of puppeteer)"; homepage = "https://github.com/pyppeteer/pyppeteer"; - license = lib.licenses.mit; - maintainers = with lib.maintainers; [ kmein ]; + license = licenses.mit; + maintainers = with maintainers; [ kmein ]; }; } diff --git a/pkgs/development/python-modules/pyqt/5.x.nix b/pkgs/development/python-modules/pyqt/5.x.nix index ae737ca2e638..3b98b5738825 100644 --- a/pkgs/development/python-modules/pyqt/5.x.nix +++ b/pkgs/development/python-modules/pyqt/5.x.nix @@ -5,7 +5,6 @@ , pkg-config , dbus , lndir -, python , dbus-python , sip , pyqt-builder diff --git a/pkgs/development/python-modules/pyqtgraph/default.nix b/pkgs/development/python-modules/pyqtgraph/default.nix index 49401bf1f843..a66afe76fd4a 100644 --- a/pkgs/development/python-modules/pyqtgraph/default.nix +++ b/pkgs/development/python-modules/pyqtgraph/default.nix @@ -6,7 +6,6 @@ , pyqt5 , pyopengl , qt5 -, python , pytestCheckHook , freefont_ttf , makeFontsConf diff --git a/pkgs/development/python-modules/pyramid/default.nix b/pkgs/development/python-modules/pyramid/default.nix index 9da88fee1538..fb1feb767315 100644 --- a/pkgs/development/python-modules/pyramid/default.nix +++ b/pkgs/development/python-modules/pyramid/default.nix @@ -13,7 +13,6 @@ , webob , zope_deprecation , zope_interface -, isPy35 }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/PyRMVtransport/default.nix b/pkgs/development/python-modules/pyrmvtransport/default.nix similarity index 91% rename from pkgs/development/python-modules/PyRMVtransport/default.nix rename to pkgs/development/python-modules/pyrmvtransport/default.nix index aee4789f93bf..b8104ef23707 100644 --- a/pkgs/development/python-modules/PyRMVtransport/default.nix +++ b/pkgs/development/python-modules/pyrmvtransport/default.nix @@ -12,9 +12,10 @@ }: buildPythonPackage rec { - pname = "PyRMVtransport"; + pname = "pyrmvtransport"; version = "0.3.2"; format = "pyproject"; + disabled = pythonOlder "3.6"; src = fetchFromGitHub { @@ -34,14 +35,16 @@ buildPythonPackage rec { lxml ]; - pythonImportsCheck = [ "RMVtransport" ]; - checkInputs = [ pytestCheckHook pytest-asyncio pytest-httpx ]; + pythonImportsCheck = [ + "RMVtransport" + ]; + meta = with lib; { homepage = "https://github.com/cgtobi/PyRMVtransport"; description = "Get transport information from opendata.rmv.de"; diff --git a/pkgs/development/python-modules/pyro4/default.nix b/pkgs/development/python-modules/pyro4/default.nix index ffb8584f9411..867e42485975 100644 --- a/pkgs/development/python-modules/pyro4/default.nix +++ b/pkgs/development/python-modules/pyro4/default.nix @@ -1,7 +1,6 @@ { lib , buildPythonPackage , fetchPypi -, python , serpent , dill , cloudpickle diff --git a/pkgs/development/python-modules/pyside2-tools/default.nix b/pkgs/development/python-modules/pyside2-tools/default.nix index 20f1a572f1b4..66d0fa51f211 100644 --- a/pkgs/development/python-modules/pyside2-tools/default.nix +++ b/pkgs/development/python-modules/pyside2-tools/default.nix @@ -1,4 +1,4 @@ -{ buildPythonPackage, wrapPython, python, fetchurl, lib, stdenv, cmake, qt5, +{ wrapPython, python, lib, stdenv, cmake, qt5, shiboken2, pyside2 }: stdenv.mkDerivation { diff --git a/pkgs/development/python-modules/pyside2/default.nix b/pkgs/development/python-modules/pyside2/default.nix index c2786b647d62..bf16e1522dde 100644 --- a/pkgs/development/python-modules/pyside2/default.nix +++ b/pkgs/development/python-modules/pyside2/default.nix @@ -1,4 +1,4 @@ -{ buildPythonPackage, python, fetchurl, lib, stdenv, +{ python, fetchurl, lib, stdenv, cmake, ninja, qt5, shiboken2 }: stdenv.mkDerivation rec { diff --git a/pkgs/development/python-modules/pyslurm/default.nix b/pkgs/development/python-modules/pyslurm/default.nix index abb85930e40e..f25651dcf98b 100644 --- a/pkgs/development/python-modules/pyslurm/default.nix +++ b/pkgs/development/python-modules/pyslurm/default.nix @@ -1,4 +1,4 @@ -{ lib, fetchFromGitHub, fetchpatch, buildPythonPackage, cython, slurm }: +{ lib, fetchFromGitHub, buildPythonPackage, cython, slurm }: buildPythonPackage rec { pname = "pyslurm"; diff --git a/pkgs/development/python-modules/pysnow/default.nix b/pkgs/development/python-modules/pysnow/default.nix index d8d6b4f4401b..1c9fccb70687 100644 --- a/pkgs/development/python-modules/pysnow/default.nix +++ b/pkgs/development/python-modules/pysnow/default.nix @@ -1,6 +1,5 @@ { lib , buildPythonPackage -, fetchPypi , fetchFromGitHub , poetry , brotli diff --git a/pkgs/development/python-modules/pysparse/default.nix b/pkgs/development/python-modules/pysparse/default.nix index fda5ad596088..02c1c36d0837 100644 --- a/pkgs/development/python-modules/pysparse/default.nix +++ b/pkgs/development/python-modules/pysparse/default.nix @@ -2,7 +2,6 @@ , buildPythonPackage , fetchFromGitHub , numpy -, setuptools , blas , lapack , isPy27 diff --git a/pkgs/development/python-modules/pyspcwebgw/default.nix b/pkgs/development/python-modules/pyspcwebgw/default.nix index 8c901f17747a..e1a04a9a469d 100644 --- a/pkgs/development/python-modules/pyspcwebgw/default.nix +++ b/pkgs/development/python-modules/pyspcwebgw/default.nix @@ -7,7 +7,6 @@ , pytest-asyncio , pytestCheckHook , pythonOlder -, requests }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/pyspnego/default.nix b/pkgs/development/python-modules/pyspnego/default.nix index 0e9544451c04..8ba191317ea0 100644 --- a/pkgs/development/python-modules/pyspnego/default.nix +++ b/pkgs/development/python-modules/pyspnego/default.nix @@ -13,7 +13,7 @@ buildPythonPackage rec { pname = "pyspnego"; - version = "0.3.0"; + version = "0.3.1"; disabled = pythonOlder "3.7"; @@ -21,7 +21,7 @@ buildPythonPackage rec { owner = "jborean93"; repo = pname; rev = "v${version}"; - sha256 = "sha256-jBwLll3Qtw+CGZQ5QFosZfMGFzjm1Y0rsGx3POFUds8="; + sha256 = "sha256-f7CR7wMxHNNpxizV7MFCtWci3SSNvdx+W5i/rgOUSxY="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pyswitchbot/default.nix b/pkgs/development/python-modules/pyswitchbot/default.nix index 1f21d09d9504..a51f15f5eeb7 100644 --- a/pkgs/development/python-modules/pyswitchbot/default.nix +++ b/pkgs/development/python-modules/pyswitchbot/default.nix @@ -6,20 +6,26 @@ buildPythonPackage rec { pname = "pyswitchbot"; - version = "0.12.0"; + version = "0.13.0"; + format = "setuptools"; src = fetchFromGitHub { owner = "Danielhiversen"; repo = "pySwitchbot"; rev = version; - sha256 = "sha256-8u5KeWVaCOksag2CYE7GBl36crB4k9YdLZ5aHD9hlwU="; + sha256 = "sha256-dx3OMzWJohOYCg7TnrqL4FLZoC+Q1dyJyUAdreDyfl0="; }; - propagatedBuildInputs = [ bluepy ]; + propagatedBuildInputs = [ + bluepy + ]; # Project has no tests doCheck = false; - pythonImportsCheck = [ "switchbot" ]; + + pythonImportsCheck = [ + "switchbot" + ]; meta = with lib; { description = "Python library to control Switchbot IoT devices"; diff --git a/pkgs/development/python-modules/pytautulli/default.nix b/pkgs/development/python-modules/pytautulli/default.nix index 32806004f767..b96a3de3f7ad 100644 --- a/pkgs/development/python-modules/pytautulli/default.nix +++ b/pkgs/development/python-modules/pytautulli/default.nix @@ -1,7 +1,6 @@ { lib , aiohttp , aresponses -, async-timeout , buildPythonPackage , fetchFromGitHub , pytest-asyncio @@ -11,7 +10,7 @@ buildPythonPackage rec { pname = "pytautulli"; - version = "21.10.0"; + version = "21.11.0"; format = "setuptools"; disabled = pythonOlder "3.8"; @@ -20,7 +19,7 @@ buildPythonPackage rec { owner = "ludeeus"; repo = pname; rev = version; - sha256 = "1gi1jalwzf1aykvdmdbvr7hvfch9wbbjra87f1vzdmkb5iiirw01"; + sha256 = "sha256-zODU3aN+8Fdw/GQ/EfZhn6kOuLDARKgLULzRw2+b2BM="; }; postPatch = '' @@ -32,7 +31,6 @@ buildPythonPackage rec { propagatedBuildInputs = [ aiohttp - async-timeout ]; checkInputs = [ @@ -41,7 +39,9 @@ buildPythonPackage rec { pytestCheckHook ]; - pythonImportsCheck = [ "pytautulli" ]; + pythonImportsCheck = [ + "pytautulli" + ]; meta = with lib; { description = "Python module to get information from Tautulli"; diff --git a/pkgs/development/python-modules/pytest-arraydiff/default.nix b/pkgs/development/python-modules/pytest-arraydiff/default.nix index 5c6f9cf2b852..bfbec757b1d7 100644 --- a/pkgs/development/python-modules/pytest-arraydiff/default.nix +++ b/pkgs/development/python-modules/pytest-arraydiff/default.nix @@ -4,7 +4,6 @@ , numpy , six , pytest -, astropy }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/pytest-astropy/default.nix b/pkgs/development/python-modules/pytest-astropy/default.nix index 02b521fff4de..9a3f46d476c2 100644 --- a/pkgs/development/python-modules/pytest-astropy/default.nix +++ b/pkgs/development/python-modules/pytest-astropy/default.nix @@ -17,7 +17,7 @@ buildPythonPackage rec { pname = "pytest-astropy"; version = "0.9.0"; - disabled = pythonOlder "3.6"; + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; @@ -43,11 +43,8 @@ buildPythonPackage rec { pytest-remotedata ]; - # pytest-astropy is a meta package and has no tests - #doCheck = false; - checkPhase = '' - # 'doCheck = false;' still invokes the pytestCheckPhase which makes the build fail - ''; + # pytest-astropy is a meta package that only propagates requirements + doCheck = false; meta = with lib; { description = "Meta-package containing dependencies for testing"; diff --git a/pkgs/development/python-modules/pytest-cases/default.nix b/pkgs/development/python-modules/pytest-cases/default.nix index b8c1ab527220..47f5bbb1fd0b 100644 --- a/pkgs/development/python-modules/pytest-cases/default.nix +++ b/pkgs/development/python-modules/pytest-cases/default.nix @@ -10,12 +10,14 @@ buildPythonPackage rec { pname = "pytest-cases"; - version = "3.6.4"; + version = "3.6.5"; + format = "setuptools"; + disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "sha256-m2oxE7q46TWadhZgpwTAHKep5ZN9LG1VNCRJkPz5W1E="; + sha256 = "sha256-JZfQI6dgYFHWUbCMuHD78eBi9svoV5zkX887V9xFLNw="; }; nativeBuildInputs = [ @@ -32,7 +34,8 @@ buildPythonPackage rec { ]; postPatch = '' - substituteInPlace setup.cfg --replace "pytest-runner" "" + substituteInPlace setup.cfg \ + --replace "pytest-runner" "" ''; # Tests have dependencies (pytest-harvest, pytest-steps) which @@ -40,7 +43,9 @@ buildPythonPackage rec { # makefun, pytest-*) have circular dependecies. doCheck = false; - pythonImportsCheck = [ "pytest_cases" ]; + pythonImportsCheck = [ + "pytest_cases" + ]; meta = with lib; { description = "Separate test code from test cases in pytest"; diff --git a/pkgs/development/python-modules/pytest-datadir/default.nix b/pkgs/development/python-modules/pytest-datadir/default.nix index 26c22dfa388b..d53734618b3e 100644 --- a/pkgs/development/python-modules/pytest-datadir/default.nix +++ b/pkgs/development/python-modules/pytest-datadir/default.nix @@ -1,5 +1,5 @@ { lib, buildPythonPackage, fetchFromGitHub -, setuptools-scm, pytest, cmake +, setuptools-scm, pytest }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/pytest-dotenv/default.nix b/pkgs/development/python-modules/pytest-dotenv/default.nix new file mode 100644 index 000000000000..3ae89e6a5197 --- /dev/null +++ b/pkgs/development/python-modules/pytest-dotenv/default.nix @@ -0,0 +1,23 @@ +{ lib, buildPythonPackage, fetchPypi, pytest, python-dotenv }: + +buildPythonPackage rec { + pname = "pytest-dotenv"; + version = "0.5.2"; + + src = fetchPypi { + inherit pname version; + sha256 = "LcbDrG2HZMccbSgE6QLQ/4EPoZaS6V/hOK78mxqnNzI="; + }; + + buildInputs = [ pytest ]; + propagatedBuildInputs = [ python-dotenv ]; + + checkInputs = [ pytest ]; + + meta = with lib; { + description = "A pytest plugin that parses environment files before running tests"; + homepage = "https://github.com/quiqua/pytest-dotenv"; + license = licenses.mit; + maintainers = with maintainers; [ cleeyv ]; + }; +} diff --git a/pkgs/development/python-modules/pytest-flakes/default.nix b/pkgs/development/python-modules/pytest-flakes/default.nix index e016b68837de..ef06ed1bf4f0 100644 --- a/pkgs/development/python-modules/pytest-flakes/default.nix +++ b/pkgs/development/python-modules/pytest-flakes/default.nix @@ -7,12 +7,12 @@ buildPythonPackage rec { # upstream has abandoned project in favor of pytest-flake8 # retaining package to not break other packages pname = "pytest-flakes"; - version = "4.0.3"; + version = "4.0.4"; disabled = pythonOlder "3.5"; src = fetchPypi { inherit pname version; - sha256 = "bf070c5485dad82d5b5f5d0eb08d269737e378492d9a68f5223b0a90924c7754"; + sha256 = "551467a129331bed83596f3145d9eaf6541c26a03dc1b36419efef8ae231341b"; }; buildInputs = [ pytest ]; diff --git a/pkgs/development/python-modules/pytest-freezegun/default.nix b/pkgs/development/python-modules/pytest-freezegun/default.nix index 2fbc7a651c18..3ba67867a1aa 100644 --- a/pkgs/development/python-modules/pytest-freezegun/default.nix +++ b/pkgs/development/python-modules/pytest-freezegun/default.nix @@ -1,6 +1,5 @@ { lib , buildPythonPackage -, isPy27 , fetchFromGitHub , freezegun , pytest diff --git a/pkgs/development/python-modules/pytest-mock/2.nix b/pkgs/development/python-modules/pytest-mock/2.nix index ad1e7f0c3fd3..3ccaa7481d7d 100644 --- a/pkgs/development/python-modules/pytest-mock/2.nix +++ b/pkgs/development/python-modules/pytest-mock/2.nix @@ -1,7 +1,6 @@ { lib , buildPythonPackage , fetchPypi -, fetchpatch , isPy3k , pytest , mock diff --git a/pkgs/development/python-modules/pytest-repeat/default.nix b/pkgs/development/python-modules/pytest-repeat/default.nix index 0652bcacbccd..1b3721282159 100644 --- a/pkgs/development/python-modules/pytest-repeat/default.nix +++ b/pkgs/development/python-modules/pytest-repeat/default.nix @@ -3,7 +3,6 @@ , fetchPypi , setuptools-scm , pytest -, fetchpatch }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/pytest-sanic/default.nix b/pkgs/development/python-modules/pytest-sanic/default.nix index edcc430c1d8c..2bce8eaecb71 100644 --- a/pkgs/development/python-modules/pytest-sanic/default.nix +++ b/pkgs/development/python-modules/pytest-sanic/default.nix @@ -47,5 +47,6 @@ buildPythonPackage rec { homepage = "https://github.com/yunstanford/pytest-sanic/"; license = licenses.asl20; maintainers = with maintainers; [ costrouc ]; + broken = true; # 2021-11-04 }; } diff --git a/pkgs/development/python-modules/pytest-trio/default.nix b/pkgs/development/python-modules/pytest-trio/default.nix index a9327e2b2320..e42ed5c68386 100644 --- a/pkgs/development/python-modules/pytest-trio/default.nix +++ b/pkgs/development/python-modules/pytest-trio/default.nix @@ -1,5 +1,5 @@ { lib, buildPythonPackage, fetchFromGitHub, pythonOlder -, trio, python, async_generator, hypothesis, outcome, pytest }: +, trio, async_generator, hypothesis, outcome, pytest }: buildPythonPackage rec { pname = "pytest-trio"; diff --git a/pkgs/development/python-modules/pytest/5.nix b/pkgs/development/python-modules/pytest/5.nix index b38c1a759fe3..913133cd7818 100644 --- a/pkgs/development/python-modules/pytest/5.nix +++ b/pkgs/development/python-modules/pytest/5.nix @@ -1,16 +1,13 @@ { lib, buildPythonPackage, pythonOlder, fetchPypi, isPy3k, isPyPy , atomicwrites , attrs -, funcsigs , hypothesis -, mock , more-itertools , packaging , pathlib2 , pluggy , py , pygments -, python , setuptools , setuptools-scm , six diff --git a/pkgs/development/python-modules/python-csxcad/default.nix b/pkgs/development/python-modules/python-csxcad/default.nix index 885208e0e61c..e6f22d37b55d 100644 --- a/pkgs/development/python-modules/python-csxcad/default.nix +++ b/pkgs/development/python-modules/python-csxcad/default.nix @@ -36,7 +36,7 @@ buildPythonPackage rec { meta = with lib; { description = "Python interface to CSXCAD"; - homepage = http://openems.de/index.php/Main_Page.html; + homepage = "http://openems.de/index.php/Main_Page.html"; license = licenses.gpl3; maintainers = with maintainers; [ matthuszagh ]; platforms = platforms.linux; diff --git a/pkgs/development/python-modules/python-ecobee-api/default.nix b/pkgs/development/python-modules/python-ecobee-api/default.nix index dc35c0c022fb..7a9d9edd91b5 100644 --- a/pkgs/development/python-modules/python-ecobee-api/default.nix +++ b/pkgs/development/python-modules/python-ecobee-api/default.nix @@ -6,11 +6,11 @@ buildPythonPackage rec { pname = "python-ecobee-api"; - version = "0.2.13"; + version = "0.2.14"; src = fetchPypi { inherit pname version; - sha256 = "7c39f5aac854a2fb8fb33f41b351769a92ff784bc6112e7a5c1b9e1949a0fefe"; + sha256 = "sha256-QfVOgX/psFB/l9dPBcaHh+2v9+7LjDCUAvaEQjUrxmA="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/python-engineio/default.nix b/pkgs/development/python-modules/python-engineio/default.nix index 7f51ccac6a72..baf385bb7d78 100644 --- a/pkgs/development/python-modules/python-engineio/default.nix +++ b/pkgs/development/python-modules/python-engineio/default.nix @@ -1,28 +1,31 @@ -{ lib, stdenv -, buildPythonPackage -, fetchFromGitHub +{ lib +, stdenv , aiohttp +, buildPythonPackage , eventlet +, fetchFromGitHub , iana-etc , libredirect , mock +, pytestCheckHook +, pythonOlder , requests -, six , tornado , websocket-client -, websockets -, pytestCheckHook }: buildPythonPackage rec { pname = "python-engineio"; - version = "4.2.1"; + version = "4.3.0"; + format = "setuptools"; + + disabled = pythonOlder "3.6"; src = fetchFromGitHub { owner = "miguelgrinberg"; repo = "python-engineio"; rev = "v${version}"; - sha256 = "sha256-aAoTeQZCtxddVBPwlyv2j4aACMO9p0vQ/ESkkv4E3VE="; + sha256 = "sha256-ohNRtceh0bHBlnGSFUckG5KzoLY8Q1jvpFee7T78Vto="; }; checkInputs = [ @@ -32,7 +35,6 @@ buildPythonPackage rec { requests tornado websocket-client - websockets pytestCheckHook ]; @@ -43,11 +45,19 @@ buildPythonPackage rec { export NIX_REDIRECTS=/etc/protocols=${iana-etc}/etc/protocols:/etc/resolv.conf=$(realpath resolv.conf) \ LD_PRELOAD=${libredirect}/lib/libredirect.so ''; - postCheck = "unset NIX_REDIRECTS LD_PRELOAD"; + + postCheck = '' + unset NIX_REDIRECTS LD_PRELOAD + ''; # somehow effective log level does not change? - disabledTests = [ "test_logger" ]; - pythonImportsCheck = [ "engineio" ]; + disabledTests = [ + "test_logger" + ]; + + pythonImportsCheck = [ + "engineio" + ]; meta = with lib; { description = "Python based Engine.IO client and server"; diff --git a/pkgs/development/python-modules/python-hpilo/default.nix b/pkgs/development/python-modules/python-hpilo/default.nix index f151e3ffb4cd..c23f9eb4ac26 100644 --- a/pkgs/development/python-modules/python-hpilo/default.nix +++ b/pkgs/development/python-modules/python-hpilo/default.nix @@ -1,7 +1,6 @@ { lib , buildPythonPackage , fetchFromGitHub -, utils }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/python-jenkins/default.nix b/pkgs/development/python-modules/python-jenkins/default.nix index 06a5d234ecf6..7c1d64fc827d 100644 --- a/pkgs/development/python-modules/python-jenkins/default.nix +++ b/pkgs/development/python-modules/python-jenkins/default.nix @@ -1,4 +1,5 @@ { lib +, stdenv , buildPythonPackage , fetchPypi , mock @@ -22,6 +23,13 @@ buildPythonPackage rec { sha256 = "01jid5s09lr3kayr2h1z9n8h9nhyw3jxv9c4b5hrlxijknkqzvfy"; }; + # test uses timeout mechanism unsafe for use with the "spawn" + # multiprocessing backend used on macos + postPatch = lib.optionalString stdenv.isDarwin '' + substituteInPlace tests/test_jenkins_sockets.py \ + --replace test_jenkins_open_no_timeout dont_test_jenkins_open_no_timeout + ''; + buildInputs = [ mock ]; propagatedBuildInputs = [ pbr pyyaml setuptools six multi_key_dict requests ]; diff --git a/pkgs/development/python-modules/python-jsonrpc-server/default.nix b/pkgs/development/python-modules/python-jsonrpc-server/default.nix index a6d0bf800ea6..a8cbec25a996 100644 --- a/pkgs/development/python-modules/python-jsonrpc-server/default.nix +++ b/pkgs/development/python-modules/python-jsonrpc-server/default.nix @@ -1,7 +1,6 @@ { lib, buildPythonPackage, fetchFromGitHub, pythonOlder , pytestCheckHook, mock, pytest-cov, coverage -, future, futures ? null, ujson, isPy38 -}: +, future, futures ? null, ujson}: buildPythonPackage rec { pname = "python-jsonrpc-server"; diff --git a/pkgs/development/python-modules/python-nest/default.nix b/pkgs/development/python-modules/python-nest/default.nix index c894654e41e6..8caa61517c6f 100644 --- a/pkgs/development/python-modules/python-nest/default.nix +++ b/pkgs/development/python-modules/python-nest/default.nix @@ -1,4 +1,4 @@ -{ buildPythonPackage, fetchPypi, lib, python, python-dateutil, requests +{ buildPythonPackage, fetchPypi, lib, python-dateutil, requests , six, sseclient-py }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/python-pipedrive/default.nix b/pkgs/development/python-modules/python-pipedrive/default.nix index d776002b2129..a8d96043d8d7 100644 --- a/pkgs/development/python-modules/python-pipedrive/default.nix +++ b/pkgs/development/python-modules/python-pipedrive/default.nix @@ -1,7 +1,6 @@ { lib , buildPythonPackage , fetchPypi -, python , httplib2 }: diff --git a/pkgs/development/python-modules/python-slugify/default.nix b/pkgs/development/python-modules/python-slugify/default.nix index 14d15df16f68..5b7af8ad7360 100644 --- a/pkgs/development/python-modules/python-slugify/default.nix +++ b/pkgs/development/python-modules/python-slugify/default.nix @@ -2,7 +2,6 @@ , buildPythonPackage , fetchPypi , pytestCheckHook -, python , pythonOlder , text-unidecode , unidecode diff --git a/pkgs/development/python-modules/python-socketio/default.nix b/pkgs/development/python-modules/python-socketio/default.nix index 5a672b2dec64..cd41899c5810 100644 --- a/pkgs/development/python-modules/python-socketio/default.nix +++ b/pkgs/development/python-modules/python-socketio/default.nix @@ -1,4 +1,5 @@ { lib +, aiohttp , bidict , buildPythonPackage , fetchFromGitHub @@ -6,22 +7,31 @@ , msgpack , pytestCheckHook , python-engineio +, pythonOlder +, requests +, websocket-client }: buildPythonPackage rec { pname = "python-socketio"; - version = "5.4.0"; + version = "5.4.1"; + format = "setuptools"; + + disabled = pythonOlder "3.6"; src = fetchFromGitHub { owner = "miguelgrinberg"; repo = "python-socketio"; rev = "v${version}"; - sha256 = "sha256-0Q1R8XPciU5AEkj7Exlc906eyA5juYKzzA/Ygnzx7XU="; + sha256 = "sha256-qmC7AL2ZNB0D5p3c8ozacNMKc2COzYzPJfz6KXwWsd0="; }; propagatedBuildInputs = [ + aiohttp bidict python-engineio + requests + websocket-client ]; checkInputs = [ @@ -30,7 +40,9 @@ buildPythonPackage rec { pytestCheckHook ]; - pythonImportsCheck = [ "socketio" ]; + pythonImportsCheck = [ + "socketio" + ]; meta = with lib; { description = "Python Socket.IO server and client"; diff --git a/pkgs/development/python-modules/python-songpal/default.nix b/pkgs/development/python-modules/python-songpal/default.nix index 180e5b3d833e..ba17dd81166d 100644 --- a/pkgs/development/python-modules/python-songpal/default.nix +++ b/pkgs/development/python-modules/python-songpal/default.nix @@ -9,7 +9,6 @@ , attrs , click , importlib-metadata -, pytestCheckHook }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/python-string-utils/default.nix b/pkgs/development/python-modules/python-string-utils/default.nix index d8d1b136fb3e..1185959f0c6f 100644 --- a/pkgs/development/python-modules/python-string-utils/default.nix +++ b/pkgs/development/python-modules/python-string-utils/default.nix @@ -1,7 +1,6 @@ { lib , buildPythonPackage , fetchPypi -, pytest }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/python-telegram-bot/default.nix b/pkgs/development/python-modules/python-telegram-bot/default.nix index e188a3ef8686..382eb3c5a314 100644 --- a/pkgs/development/python-modules/python-telegram-bot/default.nix +++ b/pkgs/development/python-modules/python-telegram-bot/default.nix @@ -13,12 +13,14 @@ buildPythonPackage rec { pname = "python-telegram-bot"; - version = "13.7"; + version = "13.8.1"; + format = "setuptools"; + disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "sha256-JN91RZ4zW5a6/6aZFnn4RL1CaXivWmnKQZoKxDpAYCw="; + sha256 = "sha256-sGaR5Vw1lDJn7mNtmqcCs1eRVdLzLg4tbX8R8LXnJ/A="; }; propagatedBuildInputs = [ @@ -45,7 +47,9 @@ buildPythonPackage rec { # tests not included with release doCheck = false; - pythonImportsCheck = [ "telegram" ]; + pythonImportsCheck = [ + "telegram" + ]; meta = with lib; { description = "Python library to interface with the Telegram Bot API"; diff --git a/pkgs/development/python-modules/python3-saml/default.nix b/pkgs/development/python-modules/python3-saml/default.nix index af57357d11c9..a21ee97eca5d 100644 --- a/pkgs/development/python-modules/python3-saml/default.nix +++ b/pkgs/development/python-modules/python3-saml/default.nix @@ -1,36 +1,18 @@ -{ lib, fetchpatch, fetchFromGitHub, buildPythonPackage, isPy3k, +{ lib, fetchFromGitHub, buildPythonPackage, isPy3k, isodate, lxml, xmlsec, freezegun }: buildPythonPackage rec { pname = "python3-saml"; - version = "1.10.1"; + version = "1.12.0"; disabled = !isPy3k; src = fetchFromGitHub { owner = "onelogin"; repo = "python3-saml"; rev = "v${version}"; - sha256 = "1yk02xq90bm7p6k091av6gapb5h2ccxzgrbm03sj2x8h0wff9s8k"; + sha256 = "sha256-VPUsjuo4FIes8ti0tkR0kT3J3RdUt1wtl4QEahVsc2c="; }; - # Remove both patches on update - patches = [ - # Remove the dependency on defusedxml - # - # This patch is already merged upstream and does not introduce any - # functionality changes. - (fetchpatch { - url = "https://github.com/onelogin/python3-saml/commit/4b6c4b1f2ed3f6eab70ff4391e595b808ace168c.patch"; - sha256 = "sha256-KHyAoX3our3Rz2z4xo0lTBB1XOGuC3Pe+lUDCzK5WQI="; - }) - - # Update expiry dates for test response XMLs - (fetchpatch { - url = "https://github.com/onelogin/python3-saml/commit/05611bbf6d7d8313adb9c77ff88a9210333ccc38.patch"; - sha256 = "sha256-62TwgCXDFYsZIAeqAysJRziMvhUVhGzta/C2wS3v4HY="; - }) - ]; - propagatedBuildInputs = [ isodate lxml xmlsec ]; diff --git a/pkgs/development/python-modules/pythonocc-core/default.nix b/pkgs/development/python-modules/pythonocc-core/default.nix index d1d06d22c641..9039c52a8a42 100644 --- a/pkgs/development/python-modules/pythonocc-core/default.nix +++ b/pkgs/development/python-modules/pythonocc-core/default.nix @@ -1,5 +1,4 @@ -{ lib, stdenv, python, fetchFromGitHub, cmake, swig, ninja -, opencascade, smesh, freetype, libGL, libGLU, libX11 +{ lib, stdenv, python, fetchFromGitHub, cmake, swig, opencascade, smesh, freetype, libGL, libGLU, libX11 , Cocoa }: stdenv.mkDerivation rec { diff --git a/pkgs/development/python-modules/pytile/default.nix b/pkgs/development/python-modules/pytile/default.nix index 93197e1c2bad..4806fa0b55e2 100644 --- a/pkgs/development/python-modules/pytile/default.nix +++ b/pkgs/development/python-modules/pytile/default.nix @@ -13,8 +13,9 @@ buildPythonPackage rec { pname = "pytile"; - version = "5.2.4"; + version = "2021.10.0"; format = "pyproject"; + disabled = pythonOlder "3.7"; src = fetchFromGitHub { @@ -45,7 +46,9 @@ buildPythonPackage rec { "examples/" ]; - pythonImportsCheck = [ "pytile" ]; + pythonImportsCheck = [ + "pytile" + ]; __darwinAllowLocalNetworking = true; diff --git a/pkgs/development/python-modules/pytm/default.nix b/pkgs/development/python-modules/pytm/default.nix index abae39aff062..a1567c9383ed 100644 --- a/pkgs/development/python-modules/pytm/default.nix +++ b/pkgs/development/python-modules/pytm/default.nix @@ -1,5 +1,4 @@ { buildPythonPackage -, fetchPypi , fetchFromGitHub , lib , pythonOlder diff --git a/pkgs/development/python-modules/pytmx/default.nix b/pkgs/development/python-modules/pytmx/default.nix index 0c980034fecd..e43cd8b06231 100644 --- a/pkgs/development/python-modules/pytmx/default.nix +++ b/pkgs/development/python-modules/pytmx/default.nix @@ -1,23 +1,32 @@ -{ lib, fetchFromGitHub -, python, buildPythonPackage, isPy27 -, pygame, pyglet, pysdl2, six +{ lib +, buildPythonPackage +, fetchFromGitHub +, pygame +, pyglet +, pysdl2 +, pytestCheckHook +, pythonOlder }: buildPythonPackage rec { pname = "pytmx"; - version = "3.27"; + version = "3.30"; + format = "setuptools"; - disabled = isPy27; + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "bitcraft"; repo = "PyTMX"; - # Release was not tagged. - rev = "5bb094c45e648d1de6c9ba8d8c8f31f7b83478e1"; - sha256 = "0kpd39sr2ggwzh7nd3f5801mgwm57rzrrkqcgbcypdm8l2ayga3b"; + rev = version; + sha256 = "sha256-d6VPmRdqUO6YhkOYYeXOEcrli/35IFkxK73AcZYHixw="; }; - propagatedBuildInputs = [ pygame pyglet pysdl2 six ]; + propagatedBuildInputs = [ + pygame + pyglet + pysdl2 + ]; pythonImportsCheck = [ "pytmx.pytmx" @@ -26,11 +35,14 @@ buildPythonPackage rec { "pytmx.util_pysdl2" ]; - checkPhase = '' - # Change into the test directory due to a relative resource path. - cd tests/pytmx - ${python.interpreter} -m unittest test_pytmx - ''; + checkInputs = [ + pytestCheckHook + ]; + + disabledTests = [ + # AssertionError on the property name + "test_contains_reserved_property_name" + ]; meta = with lib; { homepage = "https://github.com/bitcraft/PyTMX"; diff --git a/pkgs/development/python-modules/pytorch/default.nix b/pkgs/development/python-modules/pytorch/default.nix index 05f88ca64721..564087769acd 100644 --- a/pkgs/development/python-modules/pytorch/default.nix +++ b/pkgs/development/python-modules/pytorch/default.nix @@ -1,4 +1,4 @@ -{ stdenv, lib, fetchFromGitHub, fetchpatch, buildPythonPackage, python, +{ stdenv, lib, fetchFromGitHub, buildPythonPackage, python, cudaSupport ? false, cudatoolkit, cudnn, nccl, magma, mklDnnSupport ? true, useSystemNccl ? true, MPISupport ? false, mpi, diff --git a/pkgs/development/python-modules/pytraccar/default.nix b/pkgs/development/python-modules/pytraccar/default.nix new file mode 100644 index 000000000000..dd14bcfaadc0 --- /dev/null +++ b/pkgs/development/python-modules/pytraccar/default.nix @@ -0,0 +1,51 @@ +{ lib +, aiohttp +, aresponses +, buildPythonPackage +, fetchFromGitHub +, pytestCheckHook +, pytest-asyncio +, pythonOlder +}: + +buildPythonPackage rec { + pname = "pytraccar"; + version = "0.10.0"; + format = "setuptools"; + + disabled = pythonOlder "3.8"; + + src = fetchFromGitHub { + owner = "ludeeus"; + repo = pname; + rev = version; + sha256 = "08f7rwvbc1h17lvgv9823ssd3p0vw7yzsg40lbkacgqqiv1hxfzs"; + }; + + propagatedBuildInputs = [ + aiohttp + ]; + + checkInputs = [ + aresponses + pytestCheckHook + pytest-asyncio + ]; + + postPatch = '' + # Upstream doesn't set version in the repo + substituteInPlace setup.py \ + --replace 'version="master",' 'version="${version}",' + ''; + + pythonImportsCheck = [ + "pytraccar" + ]; + + meta = with lib; { + description = "Python library to handle device information from Traccar"; + homepage = "https://github.com/ludeeus/pytraccar"; + license = licenses.mit; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/pytradfri/default.nix b/pkgs/development/python-modules/pytradfri/default.nix index 36ffb02623a3..88e3e448ade9 100644 --- a/pkgs/development/python-modules/pytradfri/default.nix +++ b/pkgs/development/python-modules/pytradfri/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "pytradfri"; - version = "7.1.1"; + version = "7.2.0"; disabled = pythonOlder "3.7"; @@ -17,7 +17,7 @@ buildPythonPackage rec { owner = "home-assistant-libs"; repo = "pytradfri"; rev = version; - sha256 = "sha256-rLpqCpvHTXv6SyT3SOv6oUrWnSDhMG5r+BmznlnNKwg="; + sha256 = "sha256-/1K2jBgDuOIUb4WUownoceprZbOwSkQIqeEt07HfZrY="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pyturbojpeg/default.nix b/pkgs/development/python-modules/pyturbojpeg/default.nix index 84b3a9bc5e9c..a357e45a5faf 100644 --- a/pkgs/development/python-modules/pyturbojpeg/default.nix +++ b/pkgs/development/python-modules/pyturbojpeg/default.nix @@ -1,21 +1,22 @@ { lib , stdenv -, python , buildPythonPackage , fetchPypi -, substituteAll , libjpeg_turbo , numpy +, python +, substituteAll }: buildPythonPackage rec { pname = "pyturbojpeg"; - version = "1.6.2"; + version = "1.6.3"; + format = "setuptools"; src = fetchPypi { pname = "PyTurboJPEG"; inherit version; - sha256 = "sha256-gOf/i2OyNtB3oIATXzijRUnhEaMlHRvwWXPguqHDG1A="; + sha256 = "sha256-5g9MQB7vpeuorVGExt0scHtLdrWlkuLOZMT38FhAsi4="; }; patches = [ @@ -34,7 +35,9 @@ buildPythonPackage rec { ${python.interpreter} -c 'from turbojpeg import TurboJPEG; TurboJPEG()' ''; - pythonImportsCheck = [ "turbojpeg" ]; + pythonImportsCheck = [ + "turbojpeg" + ]; meta = with lib; { description = "A Python wrapper of libjpeg-turbo for decoding and encoding JPEG image"; diff --git a/pkgs/development/python-modules/pyuptimerobot/default.nix b/pkgs/development/python-modules/pyuptimerobot/default.nix new file mode 100644 index 000000000000..6334c3f64c08 --- /dev/null +++ b/pkgs/development/python-modules/pyuptimerobot/default.nix @@ -0,0 +1,51 @@ +{ lib +, aiohttp +, aresponses +, buildPythonPackage +, fetchFromGitHub +, pytestCheckHook +, pytest-asyncio +, pythonOlder +}: + +buildPythonPackage rec { + pname = "pyuptimerobot"; + version = "21.11.0"; + format = "setuptools"; + + disabled = pythonOlder "3.8"; + + src = fetchFromGitHub { + owner = "ludeeus"; + repo = pname; + rev = version; + sha256 = "1nmmwp9m38b75lz51ypcj0qxnxm9wq4id5cggl0pn2rx6gwnbw9n"; + }; + + propagatedBuildInputs = [ + aiohttp + ]; + + checkInputs = [ + aresponses + pytestCheckHook + pytest-asyncio + ]; + + postPatch = '' + # Upstream doesn't set version in the repo + substituteInPlace setup.py \ + --replace 'version="main",' 'version="${version}",' + ''; + + pythonImportsCheck = [ + "pyuptimerobot" + ]; + + meta = with lib; { + description = "Python API wrapper for Uptime Robot"; + homepage = "https://github.com/ludeeus/pyuptimerobot"; + license = licenses.mit; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/pyvex/default.nix b/pkgs/development/python-modules/pyvex/default.nix index 20e5b7a53365..ea8bf1b72c09 100644 --- a/pkgs/development/python-modules/pyvex/default.nix +++ b/pkgs/development/python-modules/pyvex/default.nix @@ -11,11 +11,11 @@ buildPythonPackage rec { pname = "pyvex"; - version = "9.0.10339"; + version = "9.0.10534"; src = fetchPypi { inherit pname version; - sha256 = "sha256-Rf3G5qFisb/rTRswqCCGJNjjFbjUhIgKgbbZwicUJDo="; + sha256 = "sha256-tUjASwLQy/p3Q+XnkbpUQNM6VHk94bIle2BzRd4EYsg="; }; postPatch = lib.optionalString stdenv.isDarwin '' diff --git a/pkgs/development/python-modules/pyvicare/default.nix b/pkgs/development/python-modules/pyvicare/default.nix index b9eb4da6f469..a47a46c338a3 100644 --- a/pkgs/development/python-modules/pyvicare/default.nix +++ b/pkgs/development/python-modules/pyvicare/default.nix @@ -10,14 +10,16 @@ buildPythonPackage rec { pname = "pyvicare"; - version = "2.13.1"; + version = "2.14.0"; + format = "setuptools"; + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "somm15"; repo = "PyViCare"; rev = version; - sha256 = "sha256-L43aickagJolw+VTRX4ZwRcfOm9fMBZOimPx8jLPHhE="; + sha256 = "sha256-+Rjs5PwsjcE8vsCS9gHmEj2Hy2OSH/YxNjYgjrBXHPk="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; @@ -38,7 +40,9 @@ buildPythonPackage rec { --replace "'setuptools-git-versioning'" " " ''; - pythonImportsCheck = [ "PyViCare" ]; + pythonImportsCheck = [ + "PyViCare" + ]; meta = with lib; { description = "Python Library to access Viessmann ViCare API"; diff --git a/pkgs/development/python-modules/pyvis/default.nix b/pkgs/development/python-modules/pyvis/default.nix index a0a024c56ca7..498dba97b325 100644 --- a/pkgs/development/python-modules/pyvis/default.nix +++ b/pkgs/development/python-modules/pyvis/default.nix @@ -1,5 +1,4 @@ { lib -, isPy3k , fetchFromGitHub , fetchpatch , buildPythonPackage diff --git a/pkgs/development/python-modules/pywayland/default.nix b/pkgs/development/python-modules/pywayland/default.nix new file mode 100644 index 000000000000..faec2c202632 --- /dev/null +++ b/pkgs/development/python-modules/pywayland/default.nix @@ -0,0 +1,43 @@ +{ lib +, buildPythonPackage +, fetchPypi +, python +, cffi +, pkg-config +, wayland +, pytestCheckHook +}: + +buildPythonPackage rec { + pname = "pywayland"; + version = "0.4.7"; + + src = fetchPypi { + inherit pname version; + sha256 = "0IMNOPTmY22JCHccIVuZxDhVr41cDcKNkx8bp+5h2CU="; + }; + + nativeBuildInputs = [ pkg-config ]; + propagatedNativeBuildInputs = [ cffi ]; + buildInputs = [ wayland ]; + propagatedBuildInputs = [ cffi ]; + checkInputs = [ pytestCheckHook ]; + + postBuild = '' + ${python.interpreter} pywayland/ffi_build.py + ''; + + # Tests need this to create sockets + preCheck = '' + export XDG_RUNTIME_DIR="$PWD" + ''; + + pythonImportsCheck = [ "pywayland" ]; + + meta = with lib; { + homepage = "https://github.com/flacjacket/pywayland"; + description = "Python bindings to wayland using cffi"; + license = licenses.ncsa; + maintainers = with maintainers; [ chvp ]; + }; +} diff --git a/pkgs/development/python-modules/pywbem/default.nix b/pkgs/development/python-modules/pywbem/default.nix index be1d0607098f..c5203ac7890d 100644 --- a/pkgs/development/python-modules/pywbem/default.nix +++ b/pkgs/development/python-modules/pywbem/default.nix @@ -1,6 +1,5 @@ { lib, buildPythonPackage, fetchPypi, libxml2 -, m2crypto, ply, pyyaml, six, pbr, pythonOlder, isPy37 -, nocasedict, nocaselist, yamlloader, requests-mock +, m2crypto, ply, pyyaml, six, pbr, pythonOlder, nocasedict, nocaselist, yamlloader, requests-mock , httpretty, lxml, mock, pytest, requests, decorator, unittest2 , FormEncode, testfixtures, pytz }: diff --git a/pkgs/development/python-modules/pywlroots/default.nix b/pkgs/development/python-modules/pywlroots/default.nix new file mode 100644 index 000000000000..ab7a8777a243 --- /dev/null +++ b/pkgs/development/python-modules/pywlroots/default.nix @@ -0,0 +1,45 @@ +{ lib +, buildPythonPackage +, fetchPypi +, python +, cffi +, pkg-config +, libxkbcommon +, libinput +, pixman +, udev +, wlroots +, wayland +, pywayland +, xkbcommon +, pytestCheckHook +}: + +buildPythonPackage rec { + pname = "pywlroots"; + version = "0.14.9"; + + src = fetchPypi { + inherit pname version; + sha256 = "jzHh5ubonn6pCaOp+Dnr7tA9n5DdZ28hBM+03jZZlvc="; + }; + + nativeBuildInputs = [ pkg-config ]; + propagatedNativeBuildInputs = [ cffi ]; + buildInputs = [ libinput libxkbcommon pixman udev wayland wlroots ]; + propagatedBuildInputs = [ cffi pywayland xkbcommon ]; + checkInputs = [ pytestCheckHook ]; + + postBuild = '' + ${python.interpreter} wlroots/ffi_build.py + ''; + + pythonImportsCheck = [ "wlroots" ]; + + meta = with lib; { + homepage = "https://github.com/flacjacket/pywlroots"; + description = "Python bindings to wlroots using cffi"; + license = licenses.ncsa; + maintainers = with maintainers; [ chvp ]; + }; +} diff --git a/pkgs/development/python-modules/pyworld/default.nix b/pkgs/development/python-modules/pyworld/default.nix index bbe5a4c135e6..9833a29593e8 100644 --- a/pkgs/development/python-modules/pyworld/default.nix +++ b/pkgs/development/python-modules/pyworld/default.nix @@ -26,7 +26,7 @@ buildPythonPackage rec { meta = with lib; { description = "PyWorld is a Python wrapper for WORLD vocoder"; - homepage = https://github.com/JeremyCCHsu/Python-Wrapper-for-World-Vocoder; + homepage = "https://github.com/JeremyCCHsu/Python-Wrapper-for-World-Vocoder"; license = licenses.mit; maintainers = [ maintainers.mic92 ]; }; diff --git a/pkgs/development/python-modules/pyxb/default.nix b/pkgs/development/python-modules/pyxb/default.nix index 3be79736e555..de4c4e8b9689 100644 --- a/pkgs/development/python-modules/pyxb/default.nix +++ b/pkgs/development/python-modules/pyxb/default.nix @@ -1,7 +1,6 @@ { lib , buildPythonPackage , fetchPypi -, python }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/pyxdg/default.nix b/pkgs/development/python-modules/pyxdg/default.nix index c0e8b8063ba0..0ad5777e6377 100644 --- a/pkgs/development/python-modules/pyxdg/default.nix +++ b/pkgs/development/python-modules/pyxdg/default.nix @@ -1,7 +1,6 @@ { lib , buildPythonPackage , fetchFromGitLab -, nose }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/qcs-api-client/default.nix b/pkgs/development/python-modules/qcs-api-client/default.nix index 4d0fdb745c89..e1f09a28c23c 100644 --- a/pkgs/development/python-modules/qcs-api-client/default.nix +++ b/pkgs/development/python-modules/qcs-api-client/default.nix @@ -18,13 +18,14 @@ buildPythonPackage rec { pname = "qcs-api-client"; - version = "0.14.0"; + version = "0.15.0"; + format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-CoiLMpaPRTISc0EO0jIMw/daTW8MyXQqaeGq0zaykmc="; + sha256 = "sha256-NzfHemIYQq2quYs3RNKF7NHfR6Vi8Sx4eRTVT2pTEYk="; }; propagatedBuildInputs = [ @@ -55,7 +56,9 @@ buildPythonPackage rec { # Project has no tests doCheck = false; - pythonImportsCheck = [ "qcs_api_client" ]; + pythonImportsCheck = [ + "qcs_api_client" + ]; meta = with lib; { description = "Python library for accessing the Rigetti QCS API"; diff --git a/pkgs/development/python-modules/qimage2ndarray/default.nix b/pkgs/development/python-modules/qimage2ndarray/default.nix index 3949361a0a8c..0bb9ed2199a2 100644 --- a/pkgs/development/python-modules/qimage2ndarray/default.nix +++ b/pkgs/development/python-modules/qimage2ndarray/default.nix @@ -1,4 +1,4 @@ -{ lib, pkgs, buildPythonPackage, fetchPypi, isPy3k +{ lib, buildPythonPackage, fetchPypi, isPy3k , numpy , pyqt5 }: diff --git a/pkgs/development/python-modules/qiskit-aer/default.nix b/pkgs/development/python-modules/qiskit-aer/default.nix index 89041f7508df..a550ea4b3cf4 100644 --- a/pkgs/development/python-modules/qiskit-aer/default.nix +++ b/pkgs/development/python-modules/qiskit-aer/default.nix @@ -24,11 +24,13 @@ , fixtures , pytest-timeout , qiskit-terra +, setuptools +, testtools }: buildPythonPackage rec { pname = "qiskit-aer"; - version = "0.8.2"; + version = "0.9.1"; format = "pyproject"; disabled = pythonOlder "3.6"; @@ -37,23 +39,16 @@ buildPythonPackage rec { owner = "Qiskit"; repo = "qiskit-aer"; rev = version; - hash = "sha256-7NWM7qpMQ3vA6p0dhEPnkBjsPMdhceYTYcAD4tsClf0="; + sha256 = "sha256-SAJjU2zYz6UabOPV1KI2JB7CbJfUJcjbPKbo6iiCk/g="; }; - patches = [ - (fetchpatch { - # https://github.com/Qiskit/qiskit-aer/pull/1250 - name = "qiskit-aer-pr-1250-native-cmake_dl_libs.patch"; - url = "https://github.com/Qiskit/qiskit-aer/commit/2bf04ade3e5411776817706cf82cc67a3b3866f6.patch"; - sha256 = "0ldwzxxfgaad7ifpci03zfdaj0kqj0p3h94qgshrd2953mf27p6z"; - }) - ]; - # Remove need for cmake python package - # pybind11 shouldn't be an install requirement, just build requirement. postPatch = '' substituteInPlace setup.py \ --replace "'cmake!=3.17,!=3.17.0'," "" \ - --replace "'pybind11>=2.6'" "" + --replace "'pybind11', min_version='2.6'" "'pybind11'" \ + --replace "pybind11>=2.6" "pybind11" \ + --replace "scikit-build>=0.11.0" "scikit-build" \ + --replace "min_version='0.11.0'" "" ''; nativeBuildInputs = [ @@ -78,7 +73,6 @@ buildPythonPackage rec { numpy ]; - # Disable using conan for build preBuild = '' export DISABLE_CONAN=1 ''; @@ -94,6 +88,16 @@ buildPythonPackage rec { ]; # Slow tests disabledTests = [ + "test_snapshot" # TODO: these ~30 tests fail on setup due to pytest fixture issues? + "test_initialize_2" # TODO: simulations appear incorrect, off by >10%. + + # these fail for some builds. Haven't been able to reproduce error locally. + "test_kraus_gate_noise" + "test_backend_method_clifford_circuits_and_kraus_noise" + "test_backend_method_nonclifford_circuit_and_kraus_noise" + "test_kraus_noise_fusion" + + # Slow tests "test_paulis_1_and_2_qubits" "test_3d_oscillator" "_057" @@ -107,6 +111,7 @@ buildPythonPackage rec { "_144" "test_sparse_output_probabilities" "test_reset_2_qubit" + # "test_clifford" ]; checkInputs = [ pytestCheckHook @@ -114,6 +119,8 @@ buildPythonPackage rec { fixtures pytest-timeout qiskit-terra + setuptools # temporary workaround for pbr missing setuptools, see https://github.com/NixOS/nixpkgs/pull/132614 + testtools ]; pytestFlagsArray = [ "--timeout=30" diff --git a/pkgs/development/python-modules/qiskit-aqua/default.nix b/pkgs/development/python-modules/qiskit-aqua/default.nix index 7069629470cd..b5bfa729321e 100644 --- a/pkgs/development/python-modules/qiskit-aqua/default.nix +++ b/pkgs/development/python-modules/qiskit-aqua/default.nix @@ -19,7 +19,7 @@ , withTorch ? false , pytorch , withPyscf ? false -, pyscf ? null +, pyscf , withScikitQuant ? false , scikit-quant ? null , withCplex ? false @@ -33,7 +33,7 @@ buildPythonPackage rec { pname = "qiskit-aqua"; - version = "0.9.1"; + version = "0.9.5"; disabled = pythonOlder "3.6"; @@ -42,7 +42,7 @@ buildPythonPackage rec { owner = "Qiskit"; repo = "qiskit-aqua"; rev = version; - hash = "sha256-fptyqPrkUgl3UjtlEmDYORdX/SsONxWozQGEs/EahmU="; + sha256 = "sha256-7QmRwlbAVAR5KfM7tuObkb6+UgiuIm82iGWBuqfve08="; }; # Optional packages: pyscf (see below NOTE) & pytorch. Can install via pip/nix if needed. @@ -113,13 +113,25 @@ buildPythonPackage rec { pytestFlagsArray = [ "--timeout=30" "--durations=10" - ] ++ lib.optionals (!withPyscf) [ - "--ignore=test/chemistry/test_qeom_ee.py" - "--ignore=test/chemistry/test_qeom_vqe.py" - "--ignore=test/chemistry/test_vqe_uccsd_adapt.py" - "--ignore=test/chemistry/test_bopes_sampler.py" + ]; + disabledTestPaths = lib.optionals (!withPyscf) [ + "test/chemistry/test_qeom_ee.py" + "test/chemistry/test_qeom_vqe.py" + "test/chemistry/test_vqe_uccsd_adapt.py" + "test/chemistry/test_bopes_sampler.py" ]; disabledTests = [ + # TODO: figure out why failing, only fail with upgrade to qiskit-terra > 0.16.1 & qiskit-aer > 0.7.2 + # In test.aqua.test_amplitude_estimation.TestSineIntegral + "test_confidence_intervals_1" + "test_statevector_1" + + # fails due to approximation error with latest qiskit-aer? + "test_application" + + # Fail on CI for some reason, not locally + "test_binary" + # Online tests "test_exchangedata" "test_yahoo" diff --git a/pkgs/development/python-modules/qiskit-finance/default.nix b/pkgs/development/python-modules/qiskit-finance/default.nix new file mode 100644 index 000000000000..d4eaa58e7af9 --- /dev/null +++ b/pkgs/development/python-modules/qiskit-finance/default.nix @@ -0,0 +1,78 @@ +{ lib +, pythonOlder +, buildPythonPackage +, fetchFromGitHub + # Python Inputs +, fastdtw +, numpy +, pandas +, psutil +, qiskit-terra +, qiskit-optimization +, scikit-learn +, scipy +, quandl +, yfinance + # Check Inputs +, pytestCheckHook +, ddt +, pytest-timeout +, qiskit-aer +}: + +buildPythonPackage rec { + pname = "qiskit-finance"; + version = "0.2.1"; + + disabled = pythonOlder "3.6"; + + src = fetchFromGitHub { + owner = "qiskit"; + repo = pname; + rev = version; + sha256 = "sha256-fEhc/01j6iYYwS6mLle+TpX9j0DVn12oPUFamEecoAY="; + }; + + propagatedBuildInputs = [ + fastdtw + numpy + pandas + psutil + qiskit-terra + qiskit-optimization + quandl + scikit-learn + scipy + yfinance + ]; + + checkInputs = [ + pytestCheckHook + pytest-timeout + ddt + qiskit-aer + ]; + + pythonImportsCheck = [ "qiskit_finance" ]; + disabledTests = [ + # Fail due to approximation error, ~1-2% + "test_application" + + # Tests fail b/c require internet connection. Stalls tests if enabled. + "test_exchangedata" + "test_yahoo" + "test_wikipedia" + ]; + pytestFlagsArray = [ + "--durations=10" + ]; + + meta = with lib; { + description = "Software for developing quantum computing programs"; + homepage = "https://qiskit.org"; + downloadPage = "https://github.com/QISKit/qiskit-optimization/releases"; + changelog = "https://qiskit.org/documentation/release_notes.html"; + license = licenses.asl20; + maintainers = with maintainers; [ drewrisinger ]; + }; +} diff --git a/pkgs/development/python-modules/qiskit-ibmq-provider/default.nix b/pkgs/development/python-modules/qiskit-ibmq-provider/default.nix index aa02de42fb32..88fcb82857d5 100644 --- a/pkgs/development/python-modules/qiskit-ibmq-provider/default.nix +++ b/pkgs/development/python-modules/qiskit-ibmq-provider/default.nix @@ -7,9 +7,9 @@ , qiskit-terra , requests , requests_ntlm -, websockets +, websocket-client # Visualization inputs -, withVisualization ? false +, withVisualization ? true , ipython , ipyvuetify , ipywidgets @@ -23,6 +23,7 @@ , nbformat , pproxy , qiskit-aer +, websockets , vcrpy }: @@ -39,7 +40,7 @@ let in buildPythonPackage rec { pname = "qiskit-ibmq-provider"; - version = "0.13.1"; + version = "0.18.0"; disabled = pythonOlder "3.6"; @@ -47,7 +48,7 @@ buildPythonPackage rec { owner = "Qiskit"; repo = pname; rev = version; - hash = "sha256-DlHlXncttzGo4uVoh2aQ7urW6krN3ej2sJ/EwuxeF2I="; + sha256 = "sha256-mVgR9vq9UpM/3VED4hpEev8YAoZY1URAxu7pVv+cjU8="; }; propagatedBuildInputs = [ @@ -56,9 +57,13 @@ buildPythonPackage rec { qiskit-terra requests requests_ntlm - websockets + websocket-client ] ++ lib.optionals withVisualization visualizationPackages; + postPatch = '' + substituteInPlace setup.py --replace "websocket-client>=1.0.1" "websocket-client" + ''; + # Most tests require credentials to run on IBMQ checkInputs = [ pytestCheckHook @@ -67,6 +72,7 @@ buildPythonPackage rec { pproxy qiskit-aer vcrpy + websockets ] ++ lib.optionals (!withVisualization) visualizationPackages; pythonImportsCheck = [ "qiskit.providers.ibmq" ]; @@ -75,6 +81,7 @@ buildPythonPackage rec { "test_old_api_url" "test_non_auth_url" "test_non_auth_url_with_hub" + "test_coder_optimizers" # TODO: reenable when package scikit-quant is packaged, either in NUR or nixpkgs # slow tests "test_websocket_retry_failure" diff --git a/pkgs/development/python-modules/qiskit-machine-learning/default.nix b/pkgs/development/python-modules/qiskit-machine-learning/default.nix new file mode 100644 index 000000000000..a2006079c195 --- /dev/null +++ b/pkgs/development/python-modules/qiskit-machine-learning/default.nix @@ -0,0 +1,87 @@ +{ lib +, pythonOlder +, pythonAtLeast +, buildPythonPackage +, fetchFromGitHub +, fetchpatch + # Python Inputs +, fastdtw +, numpy +, psutil +, qiskit-terra +, scikit-learn +, sparse + # Optional inputs +, withTorch ? true +, pytorch + # Check Inputs +, pytestCheckHook +, ddt +, pytest-timeout +, qiskit-aer +}: + +buildPythonPackage rec { + pname = "qiskit-machine-learning"; + version = "0.2.1"; + + disabled = pythonOlder "3.6"; + + src = fetchFromGitHub { + owner = "qiskit"; + repo = pname; + rev = version; + sha256 = "sha256-2dfrkNZYSaXwiOCaRrPckq4BllANgc6BogyBcP0vosY="; + }; + + propagatedBuildInputs = [ + fastdtw + numpy + psutil + qiskit-terra + scikit-learn + sparse + ] ++ lib.optional withTorch pytorch; + + doCheck = false; # TODO: enable. Tests fail on unstable due to some multithreading issue? + checkInputs = [ + pytestCheckHook + pytest-timeout + ddt + qiskit-aer + ]; + + pythonImportsCheck = [ "qiskit_machine_learning" ]; + + pytestFlagsArray = [ + "--durations=10" + "--showlocals" + "-vv" + "--ignore=test/connectors/test_torch_connector.py" # TODO: fix, get multithreading errors with python3.9, segfaults + ]; + disabledTests = [ + # Slow tests >10 s + "test_readme_sample" + "test_vqr_8" + "test_vqr_7" + "test_qgan_training_cg" + "test_vqc_4" + "test_classifier_with_circuit_qnn_and_cross_entropy_4" + "test_vqr_4" + "test_regressor_with_opflow_qnn_4" + "test_qgan_save_model" + "test_qgan_training_analytic_gradients" + "test_qgan_training_run_algo_numpy" + "test_ad_hoc_data" + "test_qgan_training" + ]; + + meta = with lib; { + description = "Software for developing quantum computing programs"; + homepage = "https://qiskit.org"; + downloadPage = "https://github.com/QISKit/qiskit-optimization/releases"; + changelog = "https://qiskit.org/documentation/release_notes.html"; + license = licenses.asl20; + maintainers = with maintainers; [ drewrisinger ]; + }; +} diff --git a/pkgs/development/python-modules/qiskit-nature/default.nix b/pkgs/development/python-modules/qiskit-nature/default.nix new file mode 100644 index 000000000000..09941fcdd448 --- /dev/null +++ b/pkgs/development/python-modules/qiskit-nature/default.nix @@ -0,0 +1,80 @@ +{ lib +, pythonOlder +, buildPythonPackage +, fetchFromGitHub + # Python Inputs +, h5py +, numpy +, psutil +, qiskit-terra +, retworkx +, scikit-learn +, scipy +, withPyscf ? false +, pyscf + # Check Inputs +, pytestCheckHook +, ddt +, pylatexenc +}: + +buildPythonPackage rec { + pname = "qiskit-nature"; + version = "0.2.2"; + + disabled = pythonOlder "3.6"; + + src = fetchFromGitHub { + owner = "qiskit"; + repo = pname; + rev = version; + sha256 = "sha256-nQbvH911Gt4KddG23qwmiXfRJTWwVEsrzPvuTQfy4FY="; + }; + + postPatch = '' + substituteInPlace requirements.txt --replace "h5py<3.3" "h5py" + ''; + + propagatedBuildInputs = [ + h5py + numpy + psutil + qiskit-terra + retworkx + scikit-learn + scipy + ] ++ lib.optional withPyscf pyscf; + + checkInputs = [ + pytestCheckHook + ddt + pylatexenc + ]; + + pythonImportsCheck = [ "qiskit_nature" ]; + + pytestFlagsArray = [ + "--durations=10" + ] ++ lib.optionals (!withPyscf) [ + "--ignore=test/algorithms/excited_state_solvers/test_excited_states_eigensolver.py" + ]; + + disabledTests = [ + # small math error < 0.05 (< 9e-6 %) + "test_vqe_uvccsd_factory" + # unsure of failure reason. Might be related to recent cvxpy update? + "test_two_qubit_reduction" + ] ++ lib.optionals (!withPyscf) [ + "test_h2_bopes_sampler" + "test_potential_interface" + ]; + + meta = with lib; { + description = "Software for developing quantum computing programs"; + homepage = "https://qiskit.org"; + downloadPage = "https://github.com/QISKit/qiskit-optimization/releases"; + changelog = "https://qiskit.org/documentation/release_notes.html"; + license = licenses.asl20; + maintainers = with maintainers; [ drewrisinger ]; + }; +} diff --git a/pkgs/development/python-modules/qiskit-optimization/default.nix b/pkgs/development/python-modules/qiskit-optimization/default.nix new file mode 100644 index 000000000000..5d9ae3d4375f --- /dev/null +++ b/pkgs/development/python-modules/qiskit-optimization/default.nix @@ -0,0 +1,63 @@ +{ lib +, pythonOlder +, buildPythonPackage +, fetchFromGitHub + # Python Inputs +, decorator +, docplex +, networkx +, numpy +, qiskit-terra +, scipy + # Check Inputs +, pytestCheckHook +, ddt +, pylatexenc +, qiskit-aer +}: + +buildPythonPackage rec { + pname = "qiskit-optimization"; + version = "0.2.3"; + + disabled = pythonOlder "3.6"; + + src = fetchFromGitHub { + owner = "qiskit"; + repo = pname; + rev = version; + sha256 = "sha256-y/j/cerzMAKVjehh1LUqYe1Juoa4lIxH2qS165S9img="; + }; + + postPatch = '' + substituteInPlace requirements.txt --replace "networkx>=2.2,<2.6" "networkx" + ''; + + propagatedBuildInputs = [ + docplex + decorator + networkx + numpy + qiskit-terra + scipy + ]; + + checkInputs = [ + pytestCheckHook + ddt + pylatexenc + qiskit-aer + ]; + + pythonImportsCheck = [ "qiskit_optimization" ]; + pytestFlagsArray = [ "--durations=10" ]; + + meta = with lib; { + description = "Software for developing quantum computing programs"; + homepage = "https://qiskit.org"; + downloadPage = "https://github.com/QISKit/qiskit-optimization/releases"; + changelog = "https://qiskit.org/documentation/release_notes.html"; + license = licenses.asl20; + maintainers = with maintainers; [ drewrisinger ]; + }; +} diff --git a/pkgs/development/python-modules/qiskit-terra/default.nix b/pkgs/development/python-modules/qiskit-terra/default.nix index 8b83c506808e..da31f86500fb 100644 --- a/pkgs/development/python-modules/qiskit-terra/default.nix +++ b/pkgs/development/python-modules/qiskit-terra/default.nix @@ -16,7 +16,10 @@ , python-dateutil , retworkx , scipy +, scikit-quant ? null +, symengine , sympy +, tweedledum , withVisualization ? false # Python visualization requirements, optional , ipywidgets @@ -29,9 +32,6 @@ # Crosstalk-adaptive layout pass , withCrosstalkPass ? false , z3 - # Classical function -> Quantum Circuit compiler -, withClassicalFunctionCompiler ? true -, tweedledum # test requirements , ddt , hypothesis @@ -52,12 +52,11 @@ let seaborn ]; crosstalkPackages = [ z3 ]; - classicalCompilerPackages = [ tweedledum ]; in buildPythonPackage rec { pname = "qiskit-terra"; - version = "0.17.4"; + version = "0.18.3"; disabled = pythonOlder "3.6"; @@ -65,7 +64,7 @@ buildPythonPackage rec { owner = "Qiskit"; repo = pname; rev = version; - hash = "sha256-JyNuke+XPqjLVZbvPud9Y7k0+EmvETVKcOYcDldBiVo="; + sha256 = "sha256-w/EnkdlC1hvmLqm4I8ajEYADxqMYGdHKrySLcb/yWGs="; }; nativeBuildInputs = [ cython ]; @@ -82,10 +81,12 @@ buildPythonPackage rec { python-dateutil retworkx scipy + scikit-quant + symengine sympy + tweedledum ] ++ lib.optionals withVisualization visualizationPackages - ++ lib.optionals withCrosstalkPass crosstalkPackages - ++ lib.optionals withClassicalFunctionCompiler classicalCompilerPackages; + ++ lib.optionals withCrosstalkPass crosstalkPackages; # *** Tests *** checkInputs = [ @@ -103,21 +104,21 @@ buildPythonPackage rec { disabledTestPaths = [ "test/randomized/test_transpiler_equivalence.py" # collection requires qiskit-aer, which would cause circular dependency - ] ++ lib.optionals (!withClassicalFunctionCompiler) [ - "test/python/classical_function_compiler/" + # These tests are nondeterministic and can randomly fail. + # We ignore them here for deterministic building. + "test/randomized/" + # These tests consistently fail on GitHub Actions build + "test/python/quantum_info/operators/test_random.py" ]; + pytestFlagsArray = [ "--durations=10" ]; disabledTests = [ - # Not working on matplotlib >= 3.4.0, checks images match. - "test_plot_circuit_layout" - # Flaky tests - "test_cx_equivalence" - "test_pulse_limits" - "test_1q_random" - ] ++ lib.optionals (!withClassicalFunctionCompiler) [ - "TestPhaseOracle" - ] ++ lib.optionals stdenv.isAarch64 [ - "test_circuit_init" # failed on aarch64, https://gist.github.com/r-rmcgibbo/c2e173d43ced4f6954811004f6b5b842 + "test_pulse_limits" # Fails on GitHub Actions, probably due to minor floating point arithmetic error. + "test_cx_equivalence" # Fails due to flaky test + "test_two_qubit_synthesis_not_pulse_optimal" # test of random circuit, seems to randomly fail depending on seed + "test_qv_natural" # fails due to sign error. Not sure why + ] ++ lib.optionals (lib.versionAtLeast matplotlib.version "3.4.0") [ + "test_plot_circuit_layout" ] # Disabling slow tests for build constraints ++ [ @@ -147,6 +148,12 @@ buildPythonPackage rec { "test_qaoa_qc_mixer_4" "test_abelian_grouper_random_2" "test_pauli_two_design" + "test_shor_factoring" + "test_sample_counts_memory_ghz" + "test_two_qubit_weyl_decomposition_ab0" + "test_sample_counts_memory_superposition" + "test_piecewise_polynomial_function" + "test_vqe_qasm" ]; # Moves tests to $PACKAGEDIR/test. They can't be run from /build because of finding diff --git a/pkgs/development/python-modules/qiskit/default.nix b/pkgs/development/python-modules/qiskit/default.nix index 6cc24be1958a..45e0326a1b71 100644 --- a/pkgs/development/python-modules/qiskit/default.nix +++ b/pkgs/development/python-modules/qiskit/default.nix @@ -8,14 +8,28 @@ , qiskit-ibmq-provider , qiskit-ignis , qiskit-terra + # Optional inputs +, withOptionalPackages ? true +, qiskit-finance +, qiskit-machine-learning +, qiskit-nature +, qiskit-optimization # Check Inputs , pytestCheckHook }: +let + optionalQiskitPackages = [ + qiskit-finance + qiskit-machine-learning + qiskit-nature + qiskit-optimization + ]; +in buildPythonPackage rec { pname = "qiskit"; # NOTE: This version denotes a specific set of subpackages. See https://qiskit.org/documentation/release_notes.html#version-history - version = "0.26.2"; + version = "0.32.0"; disabled = pythonOlder "3.6"; @@ -23,7 +37,7 @@ buildPythonPackage rec { owner = "qiskit"; repo = "qiskit"; rev = version; - hash = "sha256-QYWKKS7e/uCt5puWV4jA9Emp7M4Cyv2RUCxilbChWhw="; + sha256 = "sha256-fKR072hOD0a9TtWulqyKUT3Riwq+NHTtciR+NN5JC1Y="; }; propagatedBuildInputs = [ @@ -32,7 +46,7 @@ buildPythonPackage rec { qiskit-ibmq-provider qiskit-ignis qiskit-terra - ]; + ] ++ lib.optionals withOptionalPackages optionalQiskitPackages; checkInputs = [ pytestCheckHook ]; diff --git a/pkgs/development/python-modules/qmk-dotty-dict/default.nix b/pkgs/development/python-modules/qmk-dotty-dict/default.nix index c67d911a3eda..07b684beb7c7 100644 --- a/pkgs/development/python-modules/qmk-dotty-dict/default.nix +++ b/pkgs/development/python-modules/qmk-dotty-dict/default.nix @@ -1,4 +1,4 @@ -{ buildPythonPackage, fetchPypi, lib, pytest, setuptools-scm }: +{ buildPythonPackage, fetchPypi, lib, setuptools-scm }: buildPythonPackage rec { pname = "qmk_dotty_dict"; diff --git a/pkgs/development/python-modules/radio_beam/default.nix b/pkgs/development/python-modules/radio_beam/default.nix index 58137e3adbdb..1fcf778a58cb 100644 --- a/pkgs/development/python-modules/radio_beam/default.nix +++ b/pkgs/development/python-modules/radio_beam/default.nix @@ -1,6 +1,7 @@ { lib , fetchPypi , buildPythonPackage +, setuptools-scm , astropy , pytestCheckHook , pytest-doctestplus @@ -17,6 +18,10 @@ buildPythonPackage rec { sha256 = "e34902d91713ccab9f450b9d3e82317e292cf46a30bd42f9ad3c9a0519fcddcd"; }; + nativeBuildInputs = [ + setuptools-scm + ]; + propagatedBuildInputs = [ astropy ]; checkInputs = [ pytestCheckHook pytest-doctestplus scipy ]; diff --git a/pkgs/development/python-modules/rdflib/default.nix b/pkgs/development/python-modules/rdflib/default.nix index 97a2fe532bc5..2ffe190a4720 100644 --- a/pkgs/development/python-modules/rdflib/default.nix +++ b/pkgs/development/python-modules/rdflib/default.nix @@ -1,36 +1,68 @@ -{ buildPythonPackage +{ lib +, stdenv +, buildPythonPackage , fetchPypi -, isodate , html5lib -, SPARQLWrapper +, isodate , networkx , nose -, python +, pyparsing +, tabulate +, pandas +, pytestCheckHook +, pythonOlder +, SPARQLWrapper }: buildPythonPackage rec { pname = "rdflib"; - version = "6.0.1"; + version = "6.0.2"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "f071caff0b68634e4a7bd1d66ea3416ac98f1cc3b915938147ea899c32608728"; + sha256 = "sha256-YTauBWABR07ir/X8W5VuYqEcOpxmuw89nAqqX7tWhU4="; }; - propagatedBuildInputs = [isodate html5lib SPARQLWrapper ]; + propagatedBuildInputs = [ + isodate + html5lib + pyparsing + SPARQLWrapper + ]; - checkInputs = [ networkx nose ]; + checkInputs = [ + networkx + pandas + nose + tabulate + pytestCheckHook + ]; - # Python 2 syntax - # Failing doctest - doCheck = false; + disabledTests = [ + # Requires network access + "api_key" + "BerkeleyDBTestCase" + "test_bad_password" + "test_service" + "testGuessFormatForParse" + ] ++ lib.optional stdenv.isDarwin [ + # Require loopback network access + "test_sparqlstore" + "test_sparqlupdatestore_mock" + "TestGraphHTTP" + ]; - checkPhase = '' - ${python.interpreter} run_tests.py - ''; + pythonImportsCheck = [ + "rdflib" + ]; - meta = { - description = "A Python library for working with RDF, a simple yet powerful language for representing information"; - homepage = "http://www.rdflib.net/"; + meta = with lib; { + description = "Python library for working with RDF"; + homepage = "https://rdflib.readthedocs.io"; + license = licenses.bsd3; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/development/python-modules/restfly/default.nix b/pkgs/development/python-modules/restfly/default.nix index 30db5c663813..8b47183dcfd3 100644 --- a/pkgs/development/python-modules/restfly/default.nix +++ b/pkgs/development/python-modules/restfly/default.nix @@ -11,13 +11,13 @@ buildPythonPackage rec { pname = "restfly"; - version = "1.4.3"; + version = "1.4.4"; src = fetchFromGitHub { owner = "stevemcgrath"; repo = pname; rev = version; - sha256 = "sha256-F+1Z+VAJkfqD345ZLE/DMyDW0ZqdV+wIA9N6ohl2rbY="; + sha256 = "sha256-T5NfG+Vuguh6xZ/Rdx3a1vMDgXPcl/OYhOkxb76yEXg="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/rfc3339-validator/default.nix b/pkgs/development/python-modules/rfc3339-validator/default.nix index 6294eee7f346..d821d672a294 100644 --- a/pkgs/development/python-modules/rfc3339-validator/default.nix +++ b/pkgs/development/python-modules/rfc3339-validator/default.nix @@ -1,6 +1,5 @@ { lib , buildPythonPackage -, fetchpatch , fetchPypi , pytestCheckHook , hypothesis diff --git a/pkgs/development/python-modules/rpyc/default.nix b/pkgs/development/python-modules/rpyc/default.nix index e549a00c8948..e56aed2aeb7c 100644 --- a/pkgs/development/python-modules/rpyc/default.nix +++ b/pkgs/development/python-modules/rpyc/default.nix @@ -1,7 +1,6 @@ { lib , buildPythonPackage , fetchFromGitHub -, nose , plumbum , pytestCheckHook }: diff --git a/pkgs/development/python-modules/rsa/default.nix b/pkgs/development/python-modules/rsa/default.nix index 247fd2a2a7f8..b4668e3d2eaf 100644 --- a/pkgs/development/python-modules/rsa/default.nix +++ b/pkgs/development/python-modules/rsa/default.nix @@ -6,7 +6,6 @@ , mock , isPy3k , pythonOlder -, poetry }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/ruamel_yaml_clib/default.nix b/pkgs/development/python-modules/ruamel_yaml_clib/default.nix index c403239d5525..52840f340cff 100644 --- a/pkgs/development/python-modules/ruamel_yaml_clib/default.nix +++ b/pkgs/development/python-modules/ruamel_yaml_clib/default.nix @@ -1,9 +1,6 @@ { lib , buildPythonPackage , fetchhg -, ruamel_base -, ruamel_ordereddict ? null -, isPy3k }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/ruffus/default.nix b/pkgs/development/python-modules/ruffus/default.nix index a425c077343f..714ffebd8a4e 100644 --- a/pkgs/development/python-modules/ruffus/default.nix +++ b/pkgs/development/python-modules/ruffus/default.nix @@ -3,7 +3,6 @@ , fetchFromGitHub , hostname , pytest -, python , lib, stdenv }: diff --git a/pkgs/development/python-modules/sagemaker/default.nix b/pkgs/development/python-modules/sagemaker/default.nix index 015ba22781a8..ece8af476d87 100644 --- a/pkgs/development/python-modules/sagemaker/default.nix +++ b/pkgs/development/python-modules/sagemaker/default.nix @@ -16,11 +16,11 @@ buildPythonPackage rec { pname = "sagemaker"; - version = "2.63.0"; + version = "2.63.1"; src = fetchPypi { inherit pname version; - sha256 = "b4d793217181f4ff1d269aa22e44f82e21a060ec9723301e1ae5e7d9082c76c8"; + sha256 = "924847e9793b76d188049718aabbcad975296bb267812ad18e0279e7af0cb748"; }; pythonImportsCheck = [ diff --git a/pkgs/development/python-modules/sanic-routing/default.nix b/pkgs/development/python-modules/sanic-routing/default.nix index 76eb72dc7086..b0ecc5ed122c 100644 --- a/pkgs/development/python-modules/sanic-routing/default.nix +++ b/pkgs/development/python-modules/sanic-routing/default.nix @@ -7,13 +7,13 @@ buildPythonPackage rec { pname = "sanic-routing"; - version = "0.6.2"; + version = "0.7.2"; src = fetchFromGitHub { owner = "sanic-org"; repo = "sanic-routing"; rev = "v${version}"; - hash = "sha256-ZMl8PB9E401pUfUJ4tW7nBx1TgPQQtx9erVni3zP+lo="; + hash = "sha256-MN6A8CtDVxj34eehr3UIwCT09VOfcruVX+/iImr1MgY="; }; checkInputs = [ pytestCheckHook pytest-asyncio ]; diff --git a/pkgs/development/python-modules/sanic/default.nix b/pkgs/development/python-modules/sanic/default.nix index cc7be4c93dc6..a3b21168b228 100644 --- a/pkgs/development/python-modules/sanic/default.nix +++ b/pkgs/development/python-modules/sanic/default.nix @@ -1,16 +1,15 @@ { lib +, stdenv , aiofiles , beautifulsoup4 , buildPythonPackage , doCheck ? true , fetchFromGitHub -, fetchpatch , gunicorn , httptools , multidict , pytest-asyncio , pytest-benchmark -, pytest-sanic , pytest-sugar , pytestCheckHook , sanic-routing @@ -23,28 +22,19 @@ buildPythonPackage rec { pname = "sanic"; - version = "21.3.4"; + version = "21.9.1"; src = fetchFromGitHub { owner = "sanic-org"; repo = pname; rev = "v${version}"; - sha256 = "0vldlic8gqcf56fqb31igycqf11syd9csk66v34w6dim54lcny2b"; + sha256 = "sha256-TRrJr/L8AXLAARPjhBi2FxNh+jvxxdeMN24cT1njmqY="; }; - patches = [ - # Allow later websockets release, https://github.com/sanic-org/sanic/pull/2154 - (fetchpatch { - name = "later-websockets.patch"; - url = "https://github.com/sanic-org/sanic/commit/5fb820b5c1ce395e86a1ee11996790c65ec7bc65.patch"; - sha256 = "1glvq23pf1sxqjnrz0w8rr7nsnyz82k1479b3rm8szfkjg9q5d1w"; - }) - ]; - postPatch = '' # Loosen dependency requirements. substituteInPlace setup.py \ - --replace '"pytest==5.2.1"' '"pytest"' \ + --replace '"pytest==6.2.5"' '"pytest"' \ --replace '"gunicorn==20.0.4"' '"gunicorn"' \ --replace '"pytest-sanic",' "" \ # Patch a request headers test to allow brotli encoding @@ -68,7 +58,6 @@ buildPythonPackage rec { gunicorn pytest-asyncio pytest-benchmark - pytest-sanic pytest-sugar pytestCheckHook sanic-testing @@ -77,6 +66,11 @@ buildPythonPackage rec { inherit doCheck; + preCheck = '' + # Some tests depends on executables on PATH + PATH="$out/bin:${gunicorn}/bin:$PATH" + ''; + disabledTests = [ # Tests are flaky "test_keep_alive_client_timeout" @@ -84,8 +78,18 @@ buildPythonPackage rec { "test_check_timeouts_response_timeout" "test_reloader_live" "test_zero_downtime" + # Not working from 21.9.1 + "test_create_server_main" + "test_create_server_main_convenience" + "test_debug" + "test_auto_reload" + ] ++ lib.optionals stdenv.isDarwin [ + # https://github.com/sanic-org/sanic/issues/2298 + "test_no_exceptions_when_cancel_pending_request" ]; + # avoid usage of nixpkgs-review in darwin since tests will compete usage + # for the same local port __darwinAllowLocalNetworking = true; pythonImportsCheck = [ "sanic" ]; diff --git a/pkgs/development/python-modules/schema-salad/default.nix b/pkgs/development/python-modules/schema-salad/default.nix index 4e778054875e..a5fd59fb60fa 100644 --- a/pkgs/development/python-modules/schema-salad/default.nix +++ b/pkgs/development/python-modules/schema-salad/default.nix @@ -1,4 +1,5 @@ { lib +, black , buildPythonPackage , fetchPypi , cachecontrol @@ -8,15 +9,19 @@ , rdflib-jsonld , ruamel_yaml , pytestCheckHook +, pythonOlder }: buildPythonPackage rec { pname = "schema-salad"; - version = "8.2.20210918131710"; + version = "8.2.20211104054942"; + format = "setuptools"; + + disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "464180407f49a3533cd5a5bc7db9254769bc77595ea00562bbe4a50493f7f445"; + sha256 = "sha256-1crKyAON8iZBYxP6bhj0MxV3fSpnCh3Lqp8x91KLBT8="; }; propagatedBuildInputs = [ @@ -28,13 +33,20 @@ buildPythonPackage rec { ruamel_yaml ]; - checkInputs = [ pytestCheckHook ]; + checkInputs = [ + black + pytestCheckHook + ]; + disabledTests = [ # setup for these tests requires network access "test_secondaryFiles" "test_outputBinding" ]; - pythonImportsCheck = [ "schema_salad" ]; + + pythonImportsCheck = [ + "schema_salad" + ]; meta = with lib; { description = "Semantic Annotations for Linked Avro Data"; diff --git a/pkgs/development/python-modules/scikit-build/default.nix b/pkgs/development/python-modules/scikit-build/default.nix index 749e07ef840e..bc72f76bf223 100644 --- a/pkgs/development/python-modules/scikit-build/default.nix +++ b/pkgs/development/python-modules/scikit-build/default.nix @@ -1,7 +1,6 @@ { lib , buildPythonPackage , fetchPypi -, fetchpatch , distro , packaging , setuptools diff --git a/pkgs/development/python-modules/scikit-hep-testdata/default.nix b/pkgs/development/python-modules/scikit-hep-testdata/default.nix index c3cb38fbe6a6..0f76efe2ea59 100644 --- a/pkgs/development/python-modules/scikit-hep-testdata/default.nix +++ b/pkgs/development/python-modules/scikit-hep-testdata/default.nix @@ -5,7 +5,6 @@ , importlib-resources , pyyaml , requests -, pytestCheckHook , setuptools-scm }: diff --git a/pkgs/development/python-modules/scikit-image/add-testing-data.patch b/pkgs/development/python-modules/scikit-image/add-testing-data.patch new file mode 100644 index 000000000000..60f9287f8b1c --- /dev/null +++ b/pkgs/development/python-modules/scikit-image/add-testing-data.patch @@ -0,0 +1,17 @@ +diff --git a/skimage/data/setup.py b/skimage/data/setup.py +index 528e9c284ce..ba0e155559c 100644 +--- a/skimage/data/setup.py ++++ b/skimage/data/setup.py +@@ -11,7 +11,11 @@ def configuration(parent_package='', top_path=None): + # further notice. + # Testing data and additional datasets should only + # be made available via pooch +- config.add_data_files(*legacy_datasets) ++ # Nix patch: add ALL images to facilitate testing of a fully-built package ++ from pathlib import Path ++ config.add_data_files( ++ *(path.name for path in Path(__file__).parent.glob("*") if path.suffix != ".py") ++ ) + # It seems hard to create a consistent hash for README.txt since + # the line endings keep getting converted + config.add_data_files('README.txt') diff --git a/pkgs/development/python-modules/scikit-image/default.nix b/pkgs/development/python-modules/scikit-image/default.nix index b34d3ff7b8de..9c3583fe365a 100644 --- a/pkgs/development/python-modules/scikit-image/default.nix +++ b/pkgs/development/python-modules/scikit-image/default.nix @@ -1,6 +1,7 @@ { lib -, fetchPypi +, fetchFromGitHub , buildPythonPackage +, python , cython , numpy , scipy @@ -11,20 +12,26 @@ , pywavelets , dask , cloudpickle -, pytest , imageio , tifffile +, pytestCheckHook }: -buildPythonPackage rec { +let + installedPackageRoot = "${builtins.placeholder "out"}/${python.sitePackages}"; +in buildPythonPackage rec { pname = "scikit-image"; version = "0.18.3"; - src = fetchPypi { - inherit pname version; - sha256 = "ecae99f93f4c5e9b1bf34959f4dc596c41f2f6b2fc407d9d9ddf85aebd3137ca"; + src = fetchFromGitHub { + owner = pname; + repo = pname; + rev = "v${version}"; + sha256 = "0a2h3bw5rkk23k4r04qc9maccg00nddssd7lfsps8nhp5agk1vyh"; }; + patches = [ ./add-testing-data.patch ]; + nativeBuildInputs = [ cython ]; propagatedBuildInputs = [ @@ -41,14 +48,51 @@ buildPythonPackage rec { tifffile ]; - checkInputs = [ pytest ]; + checkInputs = [ pytestCheckHook ]; - # No tests in archive - doCheck = false; + # (1) The package has cythonized modules, whose .so libs will appear only in the wheel, i.e. in nix store; + # (2) To stop Python from importing the wrong directory, i.e. the one in the build dir, not the one in nix store, `skimage` dir should be removed or renamed; + # (3) Therefore, tests should be run on the installed package in nix store. + + # See e.g. https://discourse.nixos.org/t/cant-import-cythonized-modules-at-checkphase/14207 on why the following is needed. + preCheck = '' + rm -r skimage + ''; + + disabledTestPaths = [ + # Requires network access (actually some data is loaded via `skimage._shared.testing.fetch` in the global scope, which calls `pytest.skip` when a network is unaccessible, leading to a pytest collection error). + "${installedPackageRoot}/skimage/filters/rank/tests/test_rank.py" + ]; + pytestFlagsArray = [ "${installedPackageRoot}" "--pyargs" "skimage" ] ++ builtins.map (testid: "--deselect=" + testid) [ + # These tests require network access + "skimage/data/test_data.py::test_skin" + "skimage/data/tests/test_data.py::test_skin" + "skimage/io/tests/test_io.py::test_imread_http_url" + "skimage/restoration/tests/test_rolling_ball.py::test_ndim" + ]; + + # Check cythonized modules + pythonImportsCheck = [ + "skimage" + "skimage._shared" + "skimage.draw" + "skimage.feature" + "skimage.restoration" + "skimage.filters" + "skimage.future.graph" + "skimage.graph" + "skimage.io" + "skimage.measure" + "skimage.morphology" + "skimage.transform" + "skimage.util" + "skimage.segmentation" + ]; meta = { description = "Image processing routines for SciPy"; homepage = "https://scikit-image.org"; license = lib.licenses.bsd3; + maintainers = with lib.maintainers; [ yl3dy ]; }; } diff --git a/pkgs/development/python-modules/scikits-odes/default.nix b/pkgs/development/python-modules/scikits-odes/default.nix index f8f48793e902..c96cf1b2ddd4 100644 --- a/pkgs/development/python-modules/scikits-odes/default.nix +++ b/pkgs/development/python-modules/scikits-odes/default.nix @@ -1,7 +1,6 @@ { lib , buildPythonPackage , fetchPypi -, fetchurl , cython , enum34 , gfortran diff --git a/pkgs/development/python-modules/scrapy/default.nix b/pkgs/development/python-modules/scrapy/default.nix index dd06a04e080a..dc05f5579817 100644 --- a/pkgs/development/python-modules/scrapy/default.nix +++ b/pkgs/development/python-modules/scrapy/default.nix @@ -13,11 +13,9 @@ , jmespath , lxml , parsel -, pillow , protego , pydispatcher , pyopenssl -, pytest-twisted , pytestCheckHook , pythonOlder , queuelib diff --git a/pkgs/development/python-modules/seahub/default.nix b/pkgs/development/python-modules/seahub/default.nix index 3ed0d9acfedc..81728dfe7864 100644 --- a/pkgs/development/python-modules/seahub/default.nix +++ b/pkgs/development/python-modules/seahub/default.nix @@ -1,4 +1,4 @@ -{ stdenv, lib, fetchFromGitHub, python3Packages, makeWrapper }: +{ lib, fetchFromGitHub, python3Packages, makeWrapper }: python3Packages.buildPythonPackage rec { pname = "seahub"; diff --git a/pkgs/development/python-modules/seqeval/default.nix b/pkgs/development/python-modules/seqeval/default.nix index 9ed516e4d5c3..73ad00332bf8 100644 --- a/pkgs/development/python-modules/seqeval/default.nix +++ b/pkgs/development/python-modules/seqeval/default.nix @@ -3,7 +3,6 @@ , fetchFromGitHub , numpy , scikit-learn -, perl , pytestCheckHook }: diff --git a/pkgs/development/python-modules/setuptools-scm/tests.nix b/pkgs/development/python-modules/setuptools-scm/tests.nix index 174b54aca9cd..b90797abf7eb 100644 --- a/pkgs/development/python-modules/setuptools-scm/tests.nix +++ b/pkgs/development/python-modules/setuptools-scm/tests.nix @@ -1,5 +1,4 @@ -{ lib -, buildPythonPackage +{ buildPythonPackage , setuptools-scm , pytestCheckHook , git diff --git a/pkgs/development/python-modules/setuptools/44.0.nix b/pkgs/development/python-modules/setuptools/44.0.nix index 40265dc639b9..ca70a1061512 100644 --- a/pkgs/development/python-modules/setuptools/44.0.nix +++ b/pkgs/development/python-modules/setuptools/44.0.nix @@ -2,9 +2,6 @@ , buildPythonPackage , fetchFromGitHub , python -, wrapPython -, unzip -, callPackage , bootstrapped-pip , lib , pipInstallHook diff --git a/pkgs/development/python-modules/setuptools/default.nix b/pkgs/development/python-modules/setuptools/default.nix index 62e7fb686c4a..e748334b5ad1 100644 --- a/pkgs/development/python-modules/setuptools/default.nix +++ b/pkgs/development/python-modules/setuptools/default.nix @@ -1,11 +1,7 @@ { stdenv -, fetchurl , buildPythonPackage , fetchFromGitHub , python -, wrapPython -, unzip -, callPackage , bootstrapped-pip , lib , pipInstallHook diff --git a/pkgs/development/python-modules/sh/default.nix b/pkgs/development/python-modules/sh/default.nix index c8da91750f02..a08920a39e2b 100644 --- a/pkgs/development/python-modules/sh/default.nix +++ b/pkgs/development/python-modules/sh/default.nix @@ -1,4 +1,4 @@ -{ lib, buildPythonPackage, fetchPypi, fetchpatch, python, coverage, lsof, glibcLocales, coreutils }: +{ lib, buildPythonPackage, fetchPypi, python, coverage, lsof, glibcLocales, coreutils }: buildPythonPackage rec { pname = "sh"; diff --git a/pkgs/development/python-modules/shapely/default.nix b/pkgs/development/python-modules/shapely/default.nix index 7cf75e12cb54..818cce6a5670 100644 --- a/pkgs/development/python-modules/shapely/default.nix +++ b/pkgs/development/python-modules/shapely/default.nix @@ -8,7 +8,6 @@ , pytestCheckHook , cython , numpy -, fetchpatch }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/shiboken2/default.nix b/pkgs/development/python-modules/shiboken2/default.nix index 23836addd0ca..11461a9545cd 100644 --- a/pkgs/development/python-modules/shiboken2/default.nix +++ b/pkgs/development/python-modules/shiboken2/default.nix @@ -1,4 +1,4 @@ -{ buildPythonPackage, python, fetchurl, lib, stdenv, pyside2 +{ python, lib, stdenv, pyside2 , cmake, qt5, llvmPackages }: stdenv.mkDerivation { diff --git a/pkgs/development/python-modules/sievelib/default.nix b/pkgs/development/python-modules/sievelib/default.nix index de023377c050..4e0e058ac947 100644 --- a/pkgs/development/python-modules/sievelib/default.nix +++ b/pkgs/development/python-modules/sievelib/default.nix @@ -1,37 +1,36 @@ -{ lib, buildPythonPackage, fetchPypi, fetchpatch, mock -, future, six, setuptools-scm }: +{ lib +, buildPythonPackage +, fetchPypi +, mock +, pytestCheckHook +, setuptools-scm +}: buildPythonPackage rec { pname = "sievelib"; - version = "1.1.1"; + version = "1.2.1"; + format = "setuptools"; src = fetchPypi { inherit pname version; - sha256 = "1sl1fnwr5jdacrrnq2rvzh4vv1dyxd3x31vnqga36gj8h546h7mz"; + sha256 = "sha256-7cubQWqYWjzFt9f01+wBPjcuv5DmTJ2eAOIDEpmvOP0="; }; - patches = [ - (fetchpatch { - name = "pip-10-pip-req.patch"; - url = "https://github.com/tonioo/sievelib/commit/1deef0e2bf039a0e817ea6f19aaf1947dc9fafbc.patch"; - sha256 = "0vaj73mcij9dism8vfaai82irh8j1b2n8gf9jl1a19d2l26jrflk"; - }) - (fetchpatch { - name = "requirements-in-setup-py.patch"; - url = "https://github.com/tonioo/sievelib/commit/91f40ec226ea288e98379da01672a46dabd89fc9.patch"; - sha256 = "0hph89xn16r353rg6f05bh0cgigmwdc736bya089qc03jhssrgns"; - }) + nativeBuildInputs = [ + setuptools-scm ]; - buildInputs = [ setuptools-scm ]; - propagatedBuildInputs = [ future six ]; - checkInputs = [ mock ]; + checkInputs = [ + mock + pytestCheckHook + ]; - meta = { + pythonImportsCheck = [ + "sievelib" + ]; + + meta = with lib; { description = "Client-side Sieve and Managesieve library written in Python"; - homepage = "https://github.com/tonioo/sievelib"; - license = lib.licenses.mit; - maintainers = with lib.maintainers; [ leenaars ]; longDescription = '' A library written in Python that implements RFC 5228 (Sieve: An Email Filtering Language) and RFC 5804 (ManageSieve: A Protocol for @@ -43,5 +42,8 @@ buildPythonPackage rec { * Vacation (RFC 5230) * Imap4flags (RFC 5232) ''; + homepage = "https://github.com/tonioo/sievelib"; + license = licenses.mit; + maintainers = with maintainers; [ leenaars ]; }; } diff --git a/pkgs/development/python-modules/simple_di/default.nix b/pkgs/development/python-modules/simple-di/default.nix similarity index 82% rename from pkgs/development/python-modules/simple_di/default.nix rename to pkgs/development/python-modules/simple-di/default.nix index 7421ccdb6367..4977c3a4bf14 100644 --- a/pkgs/development/python-modules/simple_di/default.nix +++ b/pkgs/development/python-modules/simple-di/default.nix @@ -8,9 +8,9 @@ }: buildPythonPackage rec { - version = "0.1.2"; pname = "simple_di"; - disabled = pythonOlder "3.6.1"; + version = "0.1.2"; + disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; @@ -24,6 +24,13 @@ buildPythonPackage rec { dataclasses ]; + pythonImportsCheck = [ + "simple_di" + ]; + + # pypi distribution contains no tests + doCheck = false; + meta = { description = "Simple dependency injection library"; homepage = "https://github.com/bentoml/simple_di"; diff --git a/pkgs/development/python-modules/simple-salesforce/default.nix b/pkgs/development/python-modules/simple-salesforce/default.nix index ee0d273c1869..d2b36af12a3b 100644 --- a/pkgs/development/python-modules/simple-salesforce/default.nix +++ b/pkgs/development/python-modules/simple-salesforce/default.nix @@ -3,8 +3,6 @@ , buildPythonPackage , authlib , requests -, mock -, isPy27 , nose , pytz , responses diff --git a/pkgs/development/python-modules/simplisafe-python/default.nix b/pkgs/development/python-modules/simplisafe-python/default.nix index e61063a6a471..624b63ada618 100644 --- a/pkgs/development/python-modules/simplisafe-python/default.nix +++ b/pkgs/development/python-modules/simplisafe-python/default.nix @@ -18,7 +18,7 @@ buildPythonPackage rec { pname = "simplisafe-python"; - version = "12.0.2"; + version = "2021.10.0"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -26,7 +26,7 @@ buildPythonPackage rec { owner = "bachya"; repo = pname; rev = version; - sha256 = "sha256-/KnDsnx+Jrirj6uBkdao6PI2jhtzKqDK6cmmQgsO5T4="; + sha256 = "sha256-J0uMlczR7y5wDchaOjp5d3Vf36WfRmt7d51koGiNHBk="; }; nativeBuildInputs = [ poetry-core ]; diff --git a/pkgs/development/python-modules/skytemple-files/default.nix b/pkgs/development/python-modules/skytemple-files/default.nix index f563097d98c2..7893cfb2e818 100644 --- a/pkgs/development/python-modules/skytemple-files/default.nix +++ b/pkgs/development/python-modules/skytemple-files/default.nix @@ -4,13 +4,13 @@ buildPythonPackage rec { pname = "skytemple-files"; - version = "1.3.2"; + version = "1.3.3"; src = fetchFromGitHub { owner = "SkyTemple"; repo = pname; rev = version; - sha256 = "1g3d5p6ng4zl0ib7k4gj4zy7lp30d2il2k1m92pf5gghwfjwwfca"; + sha256 = "01j6khn60mdmz32xkpqrzwdqibmpdpi2wvwzxgdnaim9sq0fdqws"; fetchSubmodules = true; }; diff --git a/pkgs/development/python-modules/skytemple-rust/default.nix b/pkgs/development/python-modules/skytemple-rust/default.nix index d98d23fada6d..793e22690e4a 100644 --- a/pkgs/development/python-modules/skytemple-rust/default.nix +++ b/pkgs/development/python-modules/skytemple-rust/default.nix @@ -2,19 +2,19 @@ buildPythonPackage rec { pname = "skytemple-rust"; - version = "unstable-2021-05-30"; # Contains build bug fixes, but is otherwise identical to 0.0.1.post0 + version = "unstable-2021-08-11"; src = fetchFromGitHub { owner = "SkyTemple"; repo = pname; - rev = "cff8b2930af6d25d41331fab8c04f56a4fd75e95"; - sha256 = "18y6wwvzyw062zlv3gcirr1hgld9d97ffyrvy0jvw8nr3b9h9x0i"; + rev = "e306e5edc096cb3fef25585d9ca5a2817543f1cd"; + sha256 = "0ja231gsy9i1z6jsaywawz93rnyjhldngi5i787nhnf88zrwx9ml"; }; cargoDeps = rustPlatform.fetchCargoTarball { inherit src; name = "${pname}-${version}"; - sha256 = "1ypcsf9gbq1bz29kfn7g4kg8741mxg1lfcbb14a0vfhjq4d6pnx9"; + sha256 = "0gjvfblyv72m0nqv90m7qvbdnazsh5ind1pxwqz83vm4zjh9a873"; }; buildInputs = lib.optionals stdenv.isDarwin [ libiconv ]; @@ -27,6 +27,6 @@ buildPythonPackage rec { homepage = "https://github.com/SkyTemple/skytemple-rust"; description = "Binary Rust extensions for SkyTemple"; license = licenses.mit; - maintainers = with maintainers; [ xfix ]; + maintainers = with maintainers; [ xfix marius851000 ]; }; } diff --git a/pkgs/development/python-modules/slackclient/default.nix b/pkgs/development/python-modules/slackclient/default.nix index c82eba66acae..1c02d592d679 100644 --- a/pkgs/development/python-modules/slackclient/default.nix +++ b/pkgs/development/python-modules/slackclient/default.nix @@ -1,4 +1,5 @@ { lib +, stdenv , aiohttp , buildPythonPackage , codecov @@ -51,7 +52,18 @@ buildPythonPackage rec { # Exclude tests that requires network features pytestFlagsArray = [ "--ignore=integration_tests" ]; - disabledTests = [ "test_start_raises_an_error_if_rtm_ws_url_is_not_returned" ]; + + disabledTests = [ + "test_start_raises_an_error_if_rtm_ws_url_is_not_returned" + ] ++ lib.optionals stdenv.isDarwin [ + # these fail with `ConnectionResetError: [Errno 54] Connection reset by peer` + "test_issue_690_oauth_access" + "test_issue_690_oauth_v2_access" + "test_send" + "test_send_attachments" + "test_send_blocks" + "test_send_dict" + ]; pythonImportsCheck = [ "slack" ]; diff --git a/pkgs/development/python-modules/smbprotocol/default.nix b/pkgs/development/python-modules/smbprotocol/default.nix index a0192ed9acea..50caecaa97cb 100644 --- a/pkgs/development/python-modules/smbprotocol/default.nix +++ b/pkgs/development/python-modules/smbprotocol/default.nix @@ -12,14 +12,14 @@ buildPythonPackage rec { pname = "smbprotocol"; - version = "1.8.1"; + version = "1.8.2"; disabled = pythonOlder "3.6"; src = fetchFromGitHub { owner = "jborean93"; repo = pname; rev = "v${version}"; - sha256 = "sha256-HhyOGRwDnLwrXPjvF04MlgSxGZc0w3nDek9Mnv49cG4="; + sha256 = "sha256-NBwfWW02lzR4Xk+7qodQX+eIXMTtdy9WOtLzsf30d4c="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/snakeviz/default.nix b/pkgs/development/python-modules/snakeviz/default.nix index 42602f15e9bc..95253b7c1593 100644 --- a/pkgs/development/python-modules/snakeviz/default.nix +++ b/pkgs/development/python-modules/snakeviz/default.nix @@ -2,11 +2,11 @@ buildPythonPackage rec { pname = "snakeviz"; - version = "2.1.0"; + version = "2.1.1"; src = fetchPypi { inherit pname version; - sha256 = "0s6byw23hr2khqx2az36hpi52fk4v6bfm1bb7biaf0d2nrpqgbcj"; + sha256 = "0d96c006304f095cb4b3fb7ed98bb866ca35a7ca4ab9020bbc27d295ee4c94d9"; }; # Upstream doesn't run tests from setup.py diff --git a/pkgs/development/python-modules/solo-python/default.nix b/pkgs/development/python-modules/solo-python/default.nix index 88df4e50fbc4..4e4a807729cf 100644 --- a/pkgs/development/python-modules/solo-python/default.nix +++ b/pkgs/development/python-modules/solo-python/default.nix @@ -14,18 +14,18 @@ buildPythonPackage rec { pname = "solo-python"; - version = "0.0.30"; + version = "0.0.31"; format = "flit"; - disabled = pythonOlder "3.6"; # only python>=3.6 is supported + + disabled = pythonOlder "3.6"; src = fetchFromGitHub { owner = "solokeys"; repo = pname; rev = version; - sha256 = "1i9kybp08qfcdx6m4wl7ij40y1v17mvvhcdg7zglwfakblf69w41"; + sha256 = "sha256-OguAHeNpom+zthREzdhejy5HJUIumrtwB0WJAwUNiSA="; }; - # replaced pinned fido, with unrestricted fido version patchPhase = '' sed -i '/fido2/c\"fido2",' pyproject.toml ''; @@ -41,12 +41,10 @@ requests ]; - # allow for writable directory for darwin preBuild = '' export HOME=$TMPDIR ''; - # repo doesn't contain tests, ensure imports aren't broken pythonImportsCheck = [ "solo" "solo.cli" diff --git a/pkgs/development/python-modules/spacy/default.nix b/pkgs/development/python-modules/spacy/default.nix index c0c8593452c0..d959ad8947d6 100644 --- a/pkgs/development/python-modules/spacy/default.nix +++ b/pkgs/development/python-modules/spacy/default.nix @@ -11,7 +11,6 @@ , jsonschema , murmurhash , numpy -, pathlib , preshed , requests , setuptools diff --git a/pkgs/development/python-modules/spacy/legacy.nix b/pkgs/development/python-modules/spacy/legacy.nix index 9bb37e9beb18..b09983aeae3d 100644 --- a/pkgs/development/python-modules/spacy/legacy.nix +++ b/pkgs/development/python-modules/spacy/legacy.nix @@ -1,7 +1,6 @@ { lib , fetchPypi , buildPythonPackage -, pytestCheckHook }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/spglib/default.nix b/pkgs/development/python-modules/spglib/default.nix index a050aadb4b20..e1d87bba03e3 100644 --- a/pkgs/development/python-modules/spglib/default.nix +++ b/pkgs/development/python-modules/spglib/default.nix @@ -1,4 +1,4 @@ -{ lib, buildPythonPackage, fetchPypi, fetchpatch, numpy, nose, pyyaml }: +{ lib, buildPythonPackage, fetchPypi, numpy, nose, pyyaml }: buildPythonPackage rec { pname = "spglib"; diff --git a/pkgs/development/python-modules/sphinxcontrib-tikz/default.nix b/pkgs/development/python-modules/sphinxcontrib-tikz/default.nix index 94799dc6a4b8..dcb96f317d4e 100644 --- a/pkgs/development/python-modules/sphinxcontrib-tikz/default.nix +++ b/pkgs/development/python-modules/sphinxcontrib-tikz/default.nix @@ -1,5 +1,4 @@ { lib -, substituteAll , buildPythonPackage , fetchPypi , sphinx diff --git a/pkgs/development/python-modules/spiderpy/default.nix b/pkgs/development/python-modules/spiderpy/default.nix index 166f821fb3ee..7970bbb84783 100644 --- a/pkgs/development/python-modules/spiderpy/default.nix +++ b/pkgs/development/python-modules/spiderpy/default.nix @@ -2,12 +2,14 @@ , buildPythonPackage , isPy27 , fetchFromGitHub +, poetry-core , requests }: buildPythonPackage rec { pname = "spiderpy"; - version = "1.5.0"; + version = "1.7.1"; + format = "pyproject"; disabled = isPy27; @@ -15,14 +17,18 @@ buildPythonPackage rec { owner = "peternijssen"; repo = "spiderpy"; rev = version; - sha256 = "1nbfjqwiyyl7lhkb4rvickxiy9nwynr2sxr1hpyv0vm09h6q8hsc"; + sha256 = "sha256-gQ/Y5c8+aSvoJzXI6eQ9rk0xDPxpi0xgO3xBKR+vVrY="; }; + nativeBuildInputs = [ + poetry-core + ]; + propagatedBuildInputs = [ requests ]; - # no unit tests implemented + # tests don't mock remote resources doCheck = false; pythonImportsCheck = [ "spiderpy.spiderapi" ]; diff --git a/pkgs/development/python-modules/spyder/default.nix b/pkgs/development/python-modules/spyder/default.nix index 85a1293ab95f..25389f2784ed 100644 --- a/pkgs/development/python-modules/spyder/default.nix +++ b/pkgs/development/python-modules/spyder/default.nix @@ -1,5 +1,5 @@ { lib, buildPythonPackage, fetchPypi, isPy27, makeDesktopItem, intervaltree, - jedi, pycodestyle, psutil, pyflakes, rope, numpy, scipy, matplotlib, pylint, + jedi, pycodestyle, psutil, rope, numpy, scipy, matplotlib, pylint, keyring, numpydoc, qtconsole, qtawesome, nbconvert, mccabe, pyopengl, cloudpickle, pygments, spyder-kernels, qtpy, pyzmq, chardet, qdarkstyle, watchdog, python-language-server, pyqtwebengine, atomicwrites, pyxdg, diff --git a/pkgs/development/python-modules/sqlalchemy-citext/default.nix b/pkgs/development/python-modules/sqlalchemy-citext/default.nix index 8fc03d788af9..9ec70d67f864 100644 --- a/pkgs/development/python-modules/sqlalchemy-citext/default.nix +++ b/pkgs/development/python-modules/sqlalchemy-citext/default.nix @@ -3,7 +3,6 @@ , fetchPypi , psycopg2 , sqlalchemy -, python }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/sqlalchemy-i18n/default.nix b/pkgs/development/python-modules/sqlalchemy-i18n/default.nix index b3038c5d242e..83d813b3dbd9 100644 --- a/pkgs/development/python-modules/sqlalchemy-i18n/default.nix +++ b/pkgs/development/python-modules/sqlalchemy-i18n/default.nix @@ -3,7 +3,6 @@ , buildPythonPackage , sqlalchemy , sqlalchemy-utils -, psycopg2 }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/starkbank-ecdsa/default.nix b/pkgs/development/python-modules/starkbank-ecdsa/default.nix index df45883b9b05..e7e114dadd6a 100644 --- a/pkgs/development/python-modules/starkbank-ecdsa/default.nix +++ b/pkgs/development/python-modules/starkbank-ecdsa/default.nix @@ -6,13 +6,14 @@ buildPythonPackage rec { pname = "starkbank-ecdsa"; - version = "2.0.0"; + version = "2.0.2"; + format = "setuptools"; src = fetchFromGitHub { owner = "starkbank"; repo = "ecdsa-python"; rev = "v${version}"; - sha256 = "sha256-MTd9aeX6UavRua0hnuy5qY5kltzSoyvv+LcL5EvU5Sc="; + sha256 = "sha256-4QFAtGqHJZSVyrGPuMdJwvF761/P6YAHjjKmCpPyGdU="; }; checkInputs = [ diff --git a/pkgs/development/python-modules/starlette/default.nix b/pkgs/development/python-modules/starlette/default.nix index e8c130692125..a9fbc74f4479 100644 --- a/pkgs/development/python-modules/starlette/default.nix +++ b/pkgs/development/python-modules/starlette/default.nix @@ -2,7 +2,6 @@ , stdenv , buildPythonPackage , fetchFromGitHub -, isPy27 , aiofiles , anyio , contextlib2 diff --git a/pkgs/development/python-modules/stashy/default.nix b/pkgs/development/python-modules/stashy/default.nix new file mode 100644 index 000000000000..fa866cc26037 --- /dev/null +++ b/pkgs/development/python-modules/stashy/default.nix @@ -0,0 +1,31 @@ +{ lib +, buildPythonPackage +, decorator +, fetchPypi +, pythonOlder +, requests + }: + +buildPythonPackage rec { + pname = "stashy"; + version = "0.7"; + disabled = pythonOlder "3.4"; + + src = fetchPypi { + inherit pname version; + sha256 = "1x89zazwxnsx6rdfw8nfr372hj4sk8nrcs5hsjxpcxcva0calrcr"; + }; + + propagatedBuildInputs = [ decorator requests ]; + + # Tests require internet connection + doCheck = false; + pythonImportsCheck = [ "stashy" ]; + + meta = with lib; { + description = "Python client for the Atlassian Bitbucket Server (formerly known as Stash) REST API."; + homepage = "https://github.com/cosmin/stashy"; + license = licenses.asl20; + maintainers = with maintainers; [ mupdt ]; + }; +} diff --git a/pkgs/development/python-modules/staticjinja/default.nix b/pkgs/development/python-modules/staticjinja/default.nix index bce5316187e7..d0c4d39f1165 100644 --- a/pkgs/development/python-modules/staticjinja/default.nix +++ b/pkgs/development/python-modules/staticjinja/default.nix @@ -16,7 +16,7 @@ buildPythonPackage rec { pname = "staticjinja"; - version = "4.1.0"; + version = "4.1.1"; format = "pyproject"; disabled = pythonOlder "3.6"; @@ -26,7 +26,7 @@ buildPythonPackage rec { owner = "staticjinja"; repo = pname; rev = version; - sha256 = "sha256-4IL+7ncJPd1e7k5oFRjQ6yvDjozcBAAZPf88biNTiLU="; + sha256 = "sha256-Bpgff3VaTylnYpkWoaWEiRWu4sYSP6dLbHDOjAhj7BM="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/stdiomask/default.nix b/pkgs/development/python-modules/stdiomask/default.nix index 8ef59074fc00..1ad09c22da8e 100644 --- a/pkgs/development/python-modules/stdiomask/default.nix +++ b/pkgs/development/python-modules/stdiomask/default.nix @@ -1,7 +1,6 @@ { lib , buildPythonPackage , fetchPypi -, pytestCheckHook }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/stdlib-list/default.nix b/pkgs/development/python-modules/stdlib-list/default.nix index d654d2588066..fb46ee24cd50 100644 --- a/pkgs/development/python-modules/stdlib-list/default.nix +++ b/pkgs/development/python-modules/stdlib-list/default.nix @@ -2,7 +2,6 @@ , buildPythonPackage , isPy27 , fetchPypi -, python }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/stestr/tests.nix b/pkgs/development/python-modules/stestr/tests.nix index 7a5d47b5dcfe..35fd1ce71a20 100644 --- a/pkgs/development/python-modules/stestr/tests.nix +++ b/pkgs/development/python-modules/stestr/tests.nix @@ -1,9 +1,5 @@ -{ stdenv -, buildPythonPackage -, ddt -, sqlalchemy +{ buildPythonPackage , stestr -, subunit2sql }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/streamz/default.nix b/pkgs/development/python-modules/streamz/default.nix index 2b327174524d..bb3e2b68cb14 100644 --- a/pkgs/development/python-modules/streamz/default.nix +++ b/pkgs/development/python-modules/streamz/default.nix @@ -1,44 +1,50 @@ { lib , buildPythonPackage -, fetchPypi -, fetchpatch , confluent-kafka , distributed +, fetchPypi , flaky , graphviz , networkx -, pytest +, pytest-asyncio +, pytestCheckHook +, pythonOlder , requests , six , toolz , tornado , zict -, pythonOlder +, fetchpatch }: buildPythonPackage rec { pname = "streamz"; - version = "0.6.2"; + version = "0.6.3"; + format = "setuptools"; + + disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "04446ece273c041506b1642bd3d8380367a8372196be4d6d6d03faafadc590b2"; + sha256 = "sha256-0wZ1ldLFRAIL9R+gLfwsFbL+gvdORAkYWNjnDmeafm8="; }; patches = [ - # Fix apply import from dask + # remove with next bump (fetchpatch { - url = "https://patch-diff.githubusercontent.com/raw/python-streamz/streamz/pull/423.patch"; - sha256 = "sha256-CR+uRvzaFu9WQ633tbvX3gAnudhlVN6VvmxKiR37diw="; + name = "fix-tests-against-distributed-2021.10.0.patch"; + url = "https://github.com/python-streamz/streamz/commit/5bd3bc4d305ff40c740bc2550c8491be9162778a.patch"; + sha256 = "1xzxcbf7yninkyizrwm3ahqk6ij2fmh0454iqjx2n7mmzx3sazx7"; + includes = ["streamz/tests/test_dask.py"]; }) ]; propagatedBuildInputs = [ networkx - tornado - toolz - zict six + toolz + tornado + zict ]; checkInputs = [ @@ -46,25 +52,32 @@ buildPythonPackage rec { distributed flaky graphviz - pytest + pytest-asyncio + pytestCheckHook requests ]; - disabled = pythonOlder "3.6"; + pythonImportsCheck = [ + "streamz" + ]; - # Disable test_tcp_async because fails on sandbox build - # disable kafka tests - checkPhase = '' - pytest --deselect=streamz/tests/test_sources.py::test_tcp_async \ - --deselect=streamz/tests/test_sources.py::test_tcp \ - --deselect=streamz/tests/test_core.py::test_partition_timeout \ - --ignore=streamz/tests/test_kafka.py - ''; + disabledTests = [ + # test_tcp_async fails on sandbox build + "test_tcp_async" + "test_tcp" + "test_partition_timeout" + # flaky + "test_from_iterable_backpressure" + ]; + disabledTestPaths = [ + # disable kafka tests + "streamz/tests/test_kafka.py" + ]; meta = with lib; { description = "Pipelines to manage continuous streams of data"; homepage = "https://github.com/python-streamz/streamz"; license = licenses.bsd3; - maintainers = [ maintainers.costrouc ]; + maintainers = with maintainers; [ costrouc ]; }; } diff --git a/pkgs/development/python-modules/subprocess-tee/default.nix b/pkgs/development/python-modules/subprocess-tee/default.nix index df15dcdfb4f1..aae41b915beb 100644 --- a/pkgs/development/python-modules/subprocess-tee/default.nix +++ b/pkgs/development/python-modules/subprocess-tee/default.nix @@ -24,6 +24,11 @@ buildPythonPackage rec { enrich ]; + disabledTests = [ + # cyclic dependency on `molecule` (see https://github.com/pycontribs/subprocess-tee/issues/50) + "test_molecule" + ]; + pythonImportsCheck = [ "subprocess_tee" ]; diff --git a/pkgs/development/python-modules/sunpy/default.nix b/pkgs/development/python-modules/sunpy/default.nix index 943bbd22c7fb..8101986f854f 100644 --- a/pkgs/development/python-modules/sunpy/default.nix +++ b/pkgs/development/python-modules/sunpy/default.nix @@ -31,12 +31,12 @@ buildPythonPackage rec { pname = "sunpy"; - version = "3.0.2"; + version = "3.1.0"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "5dcd2c5cbf2f419da00abde00798d067b515c2f082ce63f4fbe1de47682c1c41"; + sha256 = "sha256-0DF+/lQpsQKO5omBKJAe3gBjQ6QQb50IdRSacIRL/JA="; }; nativeBuildInputs = [ @@ -86,6 +86,20 @@ buildPythonPackage rec { disabledTestPaths = [ "sunpy/io/special/asdf/schemas/sunpy.org/sunpy/coordinates/frames/helioprojective-1.0.0.yaml" "sunpy/io/special/asdf/schemas/sunpy.org/sunpy/coordinates/frames/heliocentric-1.0.0.yaml" + # requires mpl-animators package + "sunpy/map/tests/test_compositemap.py" + "sunpy/map/tests/test_mapbase.py" + "sunpy/map/tests/test_mapsequence.py" + "sunpy/map/tests/test_plotting.py" + "sunpy/map/tests/test_reproject_to.py" + "sunpy/net/tests/test_helioviewer.py" + "sunpy/timeseries/tests/test_timeseriesbase.py" + "sunpy/visualization/animator/tests/test_basefuncanimator.py" + "sunpy/visualization/animator/tests/test_mapsequenceanimator.py" + "sunpy/visualization/animator/tests/test_wcs.py" + "sunpy/visualization/colormaps/tests/test_cm.py" + # requires cdflib package + "sunpy/timeseries/tests/test_timeseries_factory.py" ]; pytestFlagsArray = [ diff --git a/pkgs/development/python-modules/supervisor/default.nix b/pkgs/development/python-modules/supervisor/default.nix index a7153b07750f..dc722e947d09 100644 --- a/pkgs/development/python-modules/supervisor/default.nix +++ b/pkgs/development/python-modules/supervisor/default.nix @@ -1,4 +1,4 @@ -{ stdenv, lib, buildPythonPackage, isPy3k, fetchPypi +{ stdenv, lib, buildPythonPackage, fetchPypi , mock , pytest , setuptools diff --git a/pkgs/development/python-modules/svgwrite/default.nix b/pkgs/development/python-modules/svgwrite/default.nix index 4d30db35cce0..5b1e863c7785 100644 --- a/pkgs/development/python-modules/svgwrite/default.nix +++ b/pkgs/development/python-modules/svgwrite/default.nix @@ -1,7 +1,6 @@ { lib , buildPythonPackage , fetchFromGitHub -, isPy3k , pythonOlder , pytest }: diff --git a/pkgs/development/python-modules/swagger-spec-validator/default.nix b/pkgs/development/python-modules/swagger-spec-validator/default.nix index bdb78096aef2..71c9cf16780e 100644 --- a/pkgs/development/python-modules/swagger-spec-validator/default.nix +++ b/pkgs/development/python-modules/swagger-spec-validator/default.nix @@ -1,4 +1,4 @@ -{ lib, buildPythonPackage, fetchFromGitHub, pyyaml, jsonschema, six, pytest, mock, isPy3k }: +{ lib, buildPythonPackage, fetchFromGitHub, pyyaml, jsonschema, six, pytest, mock }: buildPythonPackage rec { pname = "swagger-spec-validator"; diff --git a/pkgs/development/python-modules/swspotify/default.nix b/pkgs/development/python-modules/swspotify/default.nix index 020e4fe1472f..df2c00ad7c0f 100644 --- a/pkgs/development/python-modules/swspotify/default.nix +++ b/pkgs/development/python-modules/swspotify/default.nix @@ -1,29 +1,31 @@ -{ lib, buildPythonPackage, fetchFromGitHub, requests, flask-cors, dbus-python, pytestCheckHook, mock, isPy27 }: +{ lib, stdenv, buildPythonPackage, fetchFromGitHub, requests +, pytestCheckHook, flask, flask-cors, dbus-python, mock, isPy27 }: buildPythonPackage rec { pname = "SwSpotify"; - version = "1.2.1"; + version = "1.2.2"; disabled = isPy27; src = fetchFromGitHub { owner = "SwagLyrics"; repo = "SwSpotify"; rev = "v${version}"; - sha256 = "0jxcvy8lw8kpjbl4q6mi11164pvi0w9m9p76bxj2m7i7s5p4dxd4"; + sha256 = "sha256-571knnY8LegIbqyPeKUfl+d0suTWAMQHYLN7edKFNdI="; }; propagatedBuildInputs = [ - requests flask-cors dbus-python + requests flask flask-cors dbus-python ]; - preConfigure = '' + postPatch = '' substituteInPlace setup.py \ - --replace 'requests>=2.24.0' 'requests~=2.23' \ - --replace 'flask-cors==3.0.8' 'flask-cors' + --replace 'flask==2.0.1' 'flask' ''; + doCheck = !stdenv.isDarwin; + checkPhase = '' - pytest tests/test_spotify.py::LinuxTests + pytest tests/test_spotify.py::${if stdenv.isDarwin then "DarwinTests" else "LinuxTests"} ''; checkInputs = [ pytestCheckHook mock ]; @@ -35,6 +37,6 @@ buildPythonPackage rec { description = "Library to get the currently playing song and artist from Spotify"; license = licenses.mit; maintainers = with maintainers; [ siraben ]; - platforms = platforms.linux; + platforms = platforms.unix; }; } diff --git a/pkgs/development/python-modules/sympy/1_5.nix b/pkgs/development/python-modules/sympy/1_5.nix index 00125f43bfc3..59c9ab878550 100644 --- a/pkgs/development/python-modules/sympy/1_5.nix +++ b/pkgs/development/python-modules/sympy/1_5.nix @@ -1,7 +1,6 @@ { lib , buildPythonPackage , fetchPypi -, fetchpatch , glibcLocales , mpmath }: diff --git a/pkgs/development/python-modules/sympy/default.nix b/pkgs/development/python-modules/sympy/default.nix index fcaa0bc27711..7d6206f04c80 100644 --- a/pkgs/development/python-modules/sympy/default.nix +++ b/pkgs/development/python-modules/sympy/default.nix @@ -1,7 +1,6 @@ { lib , buildPythonPackage , fetchPypi -, fetchpatch , glibcLocales , mpmath }: diff --git a/pkgs/development/python-modules/systembridge/default.nix b/pkgs/development/python-modules/systembridge/default.nix index 8f6d86abdd9b..34403930602c 100644 --- a/pkgs/development/python-modules/systembridge/default.nix +++ b/pkgs/development/python-modules/systembridge/default.nix @@ -7,13 +7,13 @@ buildPythonPackage rec { pname = "systembridge"; - version = "2.2.0"; + version = "2.2.3"; src = fetchFromGitHub { owner = "timmo001"; repo = "system-bridge-connector-py"; rev = "v${version}"; - sha256 = "sha256-VR5juaZdZaEo7S0XXJkspcKmH1alitNIWmI0g/dFBbM="; + sha256 = "sha256-AVMZBhf15eZM9oMUFyiHYs866P1v5z1pbTvX2Qpjzfc="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/tables/default.nix b/pkgs/development/python-modules/tables/default.nix index 34e9ef087a9b..245e619e89e0 100644 --- a/pkgs/development/python-modules/tables/default.nix +++ b/pkgs/development/python-modules/tables/default.nix @@ -1,10 +1,8 @@ { lib , fetchPypi -, fetchurl , fetchpatch , buildPythonPackage , pythonOlder -, python , bzip2 , c-blosc , cython diff --git a/pkgs/development/python-modules/telethon/default.nix b/pkgs/development/python-modules/telethon/default.nix index c4479ca63201..ad65b48ae73c 100644 --- a/pkgs/development/python-modules/telethon/default.nix +++ b/pkgs/development/python-modules/telethon/default.nix @@ -1,4 +1,4 @@ -{ lib, buildPythonPackage, fetchPypi, openssl, async_generator, rsa, pyaes, pythonOlder }: +{ lib, buildPythonPackage, fetchPypi, openssl, rsa, pyaes, pythonOlder }: buildPythonPackage rec { pname = "telethon"; diff --git a/pkgs/development/python-modules/tensorboard-plugin-profile/default.nix b/pkgs/development/python-modules/tensorboard-plugin-profile/default.nix index 843b9d6c3199..f31c42e774b7 100644 --- a/pkgs/development/python-modules/tensorboard-plugin-profile/default.nix +++ b/pkgs/development/python-modules/tensorboard-plugin-profile/default.nix @@ -25,7 +25,7 @@ buildPythonPackage rec { meta = with lib; { description = "Profile Tensorboard Plugin."; - homepage = http://tensorflow.org; + homepage = "http://tensorflow.org"; license = licenses.asl20; maintainers = with maintainers; [ ndl ]; }; diff --git a/pkgs/development/python-modules/tensorflow/bin.nix b/pkgs/development/python-modules/tensorflow/bin.nix index 8d8690d3e5c5..aae4406d0d79 100644 --- a/pkgs/development/python-modules/tensorflow/bin.nix +++ b/pkgs/development/python-modules/tensorflow/bin.nix @@ -2,8 +2,7 @@ , lib , fetchurl , buildPythonPackage -, isPy3k, pythonOlder, pythonAtLeast, isPy38 -, astor +, isPy3k, pythonOlder, pythonAtLeast, astor , gast , google-pasta , wrapt @@ -25,7 +24,6 @@ , cudnn ? null , zlib , python -, symlinkJoin , keras-applications , keras-preprocessing , addOpenGLRunpath diff --git a/pkgs/development/python-modules/tensorflow/default.nix b/pkgs/development/python-modules/tensorflow/default.nix index c077265bf632..6db4090e34ab 100644 --- a/pkgs/development/python-modules/tensorflow/default.nix +++ b/pkgs/development/python-modules/tensorflow/default.nix @@ -1,10 +1,10 @@ { stdenv, bazel_3, buildBazelPackage, isPy3k, lib, fetchFromGitHub, symlinkJoin , addOpenGLRunpath, fetchpatch # Python deps -, buildPythonPackage, pythonOlder, pythonAtLeast, python +, buildPythonPackage, pythonOlder, python # Python libraries , numpy, tensorflow-tensorboard_2, absl-py -, future, setuptools, wheel, keras-preprocessing, google-pasta +, setuptools, wheel, keras-preprocessing, google-pasta , opt-einsum, astunparse, h5py , termcolor, grpcio, six, wrapt, protobuf, tensorflow-estimator_2 , dill, flatbuffers-python, tblib, typing-extensions @@ -283,6 +283,7 @@ let bazelBuildFlags = [ "--config=opt" # optimize using the flags set in the configure phase ] + ++ lib.optionals stdenv.cc.isClang [ "--cxxopt=-x" "--cxxopt=c++" "--host_cxxopt=-x" "--host_cxxopt=c++" ] ++ lib.optionals (mklSupport) [ "--config=mkl" ]; bazelTarget = "//tensorflow/tools/pip_package:build_pip_package //tensorflow/tools/lib_package:libtensorflow"; diff --git a/pkgs/development/python-modules/tern/default.nix b/pkgs/development/python-modules/tern/default.nix index 64e1951bf446..2517c49ce2d8 100644 --- a/pkgs/development/python-modules/tern/default.nix +++ b/pkgs/development/python-modules/tern/default.nix @@ -12,6 +12,7 @@ , GitPython , prettytable , idna +, packageurl-python }: buildPythonPackage rec { @@ -42,6 +43,7 @@ buildPythonPackage rec { GitPython prettytable idna + packageurl-python ]; # No tests diff --git a/pkgs/development/python-modules/testfixtures/default.nix b/pkgs/development/python-modules/testfixtures/default.nix index be217a16b07a..99be9957a5ef 100644 --- a/pkgs/development/python-modules/testfixtures/default.nix +++ b/pkgs/development/python-modules/testfixtures/default.nix @@ -1,6 +1,5 @@ { lib , buildPythonPackage -, fetchpatch , fetchPypi , isPy27 , mock diff --git a/pkgs/development/python-modules/textfsm/default.nix b/pkgs/development/python-modules/textfsm/default.nix index fed2f7c3e3fe..ae9bda2b8b84 100644 --- a/pkgs/development/python-modules/textfsm/default.nix +++ b/pkgs/development/python-modules/textfsm/default.nix @@ -1,7 +1,6 @@ { lib , buildPythonPackage , fetchFromGitHub -, fetchpatch , six , future , pytestCheckHook diff --git a/pkgs/development/python-modules/thinc/default.nix b/pkgs/development/python-modules/thinc/default.nix index f2a70500a5fa..d2123d207eb1 100644 --- a/pkgs/development/python-modules/thinc/default.nix +++ b/pkgs/development/python-modules/thinc/default.nix @@ -15,7 +15,6 @@ , mock , murmurhash , numpy -, pathlib , plac , pythonOlder , preshed diff --git a/pkgs/development/python-modules/threadpoolctl/default.nix b/pkgs/development/python-modules/threadpoolctl/default.nix index 7ba82aaec296..4a13af31216a 100644 --- a/pkgs/development/python-modules/threadpoolctl/default.nix +++ b/pkgs/development/python-modules/threadpoolctl/default.nix @@ -23,6 +23,11 @@ buildPythonPackage rec { }; checkInputs = [ pytestCheckHook numpy scipy ]; + disabledTests = [ + # accepts a limited set of cpu models based on project + # developers' hardware + "test_architecture" + ]; meta = with lib; { homepage = "https://github.com/joblib/threadpoolctl"; diff --git a/pkgs/development/python-modules/tld/default.nix b/pkgs/development/python-modules/tld/default.nix index 875ab959a783..178ce54c8846 100644 --- a/pkgs/development/python-modules/tld/default.nix +++ b/pkgs/development/python-modules/tld/default.nix @@ -5,7 +5,6 @@ , fetchPypi , pytest-cov , pytestCheckHook -, six , tox }: diff --git a/pkgs/development/python-modules/todoist/default.nix b/pkgs/development/python-modules/todoist/default.nix index 397d21a83854..d4797bdfad35 100644 --- a/pkgs/development/python-modules/todoist/default.nix +++ b/pkgs/development/python-modules/todoist/default.nix @@ -1,5 +1,5 @@ { lib, fetchPypi, buildPythonPackage -, requests, fetchpatch, pythonOlder, typing +, requests, pythonOlder, typing }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/toggl-cli/default.nix b/pkgs/development/python-modules/toggl-cli/default.nix index fb39831a0d18..54f7e6ddf9ca 100644 --- a/pkgs/development/python-modules/toggl-cli/default.nix +++ b/pkgs/development/python-modules/toggl-cli/default.nix @@ -1,4 +1,4 @@ -{ lib, buildPythonPackage, fetchPypi, pythonAtLeast, pythonOlder, click +{ lib, buildPythonPackage, fetchPypi, pythonOlder, click , click-completion, factory_boy, faker, inquirer, notify-py, pbr, pendulum , ptable, pytestCheckHook, pytest-cov, pytest-mock, requests, twine , validate-email }: diff --git a/pkgs/development/python-modules/total-connect-client/default.nix b/pkgs/development/python-modules/total-connect-client/default.nix index 4463b9fcc9f3..fea974adfdee 100644 --- a/pkgs/development/python-modules/total-connect-client/default.nix +++ b/pkgs/development/python-modules/total-connect-client/default.nix @@ -1,19 +1,23 @@ { lib , buildPythonPackage , fetchFromGitHub -, zeep , pytestCheckHook +, pythonOlder +, zeep }: buildPythonPackage rec { pname = "total-connect-client"; - version = "2021.8.3"; + version = "2021.11.2"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "craigjmidwinter"; repo = "total-connect-client"; rev = version; - sha256 = "sha256-2iTH/Him4iMZadkmBR8Rwlt3RCqDXzR6ZqNHciNiHIk="; + sha256 = "sha256-JXau+NmulnZ0gg2XsXD9EFv3j2FBMqVqzpT1XGvMZuA="; }; propagatedBuildInputs = [ @@ -33,7 +37,9 @@ buildPythonPackage rec { "tests_request" ]; - pythonImportsCheck = [ "total_connect_client" ]; + pythonImportsCheck = [ + "total_connect_client" + ]; meta = with lib; { description = "Interact with Total Connect 2 alarm systems"; diff --git a/pkgs/development/python-modules/traitlets/default.nix b/pkgs/development/python-modules/traitlets/default.nix index 23412d0a6940..9c09a206f4d3 100644 --- a/pkgs/development/python-modules/traitlets/default.nix +++ b/pkgs/development/python-modules/traitlets/default.nix @@ -6,7 +6,6 @@ , mock , ipython_genutils , decorator -, enum34 , pythonOlder , six }: diff --git a/pkgs/development/python-modules/traits/default.nix b/pkgs/development/python-modules/traits/default.nix index 2d88fb3221aa..d0c8f26f8aae 100644 --- a/pkgs/development/python-modules/traits/default.nix +++ b/pkgs/development/python-modules/traits/default.nix @@ -3,7 +3,6 @@ , fetchPypi , isPy27 , python -, pytest , numpy }: diff --git a/pkgs/development/python-modules/translatepy/default.nix b/pkgs/development/python-modules/translatepy/default.nix index b472042dd65a..986a16db702b 100644 --- a/pkgs/development/python-modules/translatepy/default.nix +++ b/pkgs/development/python-modules/translatepy/default.nix @@ -10,13 +10,13 @@ buildPythonPackage rec { pname = "translatepy"; - version = "2.1"; + version = "2.2"; src = fetchFromGitHub { owner = "Animenosekai"; repo = "translate"; rev = "v${version}"; - sha256 = "0xj97s6zglvq2894wpq3xbjxgfkrfk2414vmcszap8h9j2zxz8gf"; + sha256 = "rnt4nmDgQXSgzwNCcsZwbQn2bv83DFhL86kebeiSosc="; }; propagatedBuildInputs = [ @@ -29,6 +29,7 @@ buildPythonPackage rec { checkInputs = [ pytestCheckHook ]; disabledTestPaths = [ # Requires network connection + "tests/test_translate.py" "tests/test_translators.py" ]; pythonImportsCheck = [ "translatepy" ]; diff --git a/pkgs/development/python-modules/tubeup/default.nix b/pkgs/development/python-modules/tubeup/default.nix index 49a293565595..65553dc18834 100644 --- a/pkgs/development/python-modules/tubeup/default.nix +++ b/pkgs/development/python-modules/tubeup/default.nix @@ -2,7 +2,7 @@ , buildPythonPackage , internetarchive , fetchPypi -, youtube-dl +, yt-dlp , docopt , isPy27 }: @@ -19,10 +19,12 @@ buildPythonPackage rec { }; postPatch = '' - substituteInPlace setup.py --replace "docopt==0.6.2" "docopt" + substituteInPlace setup.py \ + --replace "docopt==0.6.2" "docopt" \ + --replace "internetarchive==2.0.3" "internetarchive" ''; - propagatedBuildInputs = [ internetarchive docopt youtube-dl ]; + propagatedBuildInputs = [ internetarchive docopt yt-dlp ]; pythonImportsCheck = [ "tubeup" ]; diff --git a/pkgs/development/python-modules/tweedledum/default.nix b/pkgs/development/python-modules/tweedledum/default.nix index 4b24b3ff4efa..81f0dad52eb0 100644 --- a/pkgs/development/python-modules/tweedledum/default.nix +++ b/pkgs/development/python-modules/tweedledum/default.nix @@ -4,18 +4,20 @@ , cmake , ninja , scikit-build + # Check Inputs +, pytestCheckHook }: buildPythonPackage rec { pname = "tweedledum"; - version = "1.0.0"; + version = "1.1.1"; format = "pyproject"; src = fetchFromGitHub{ owner = "boschmitt"; repo = "tweedledum"; rev = "v${version}"; - hash = "sha256-59lJzdw9HLJ9ADxp/a3KW4v5aU/dYm27NSYoz9D49i4="; + sha256 = "sha256-wgrY5ajaMYxznyNvlD0ul1PFr3W8oV9I/OVsStlZEBM="; }; nativeBuildInputs = [ cmake ninja scikit-build ]; @@ -23,10 +25,8 @@ buildPythonPackage rec { pythonImportsCheck = [ "tweedledum" ]; - # TODO: use pytest, but had issues with finding the correct directories - checkPhase = '' - python -m unittest discover -s ./python/test -t . - ''; + checkInputs = [ pytestCheckHook ]; + pytestFlagsArray = [ "python/test" ]; meta = with lib; { description = "A library for synthesizing and manipulating quantum circuits"; diff --git a/pkgs/development/python-modules/tweepy/default.nix b/pkgs/development/python-modules/tweepy/default.nix index dd11e60aff6c..7892975a45d9 100644 --- a/pkgs/development/python-modules/tweepy/default.nix +++ b/pkgs/development/python-modules/tweepy/default.nix @@ -1,20 +1,48 @@ -{ lib, buildPythonPackage, fetchPypi, requests, six, requests_oauthlib }: +{ lib +, aiohttp +, buildPythonPackage +, fetchFromGitHub +, oauthlib +, requests +, pythonOlder +, vcrpy +, pytestCheckHook +, requests_oauthlib +}: buildPythonPackage rec { pname = "tweepy"; - version = "3.10.0"; + version = "4.3.0"; + format = "setuptools"; - src = fetchPypi { - inherit pname version; - sha256 = "76e6954b806ca470dda877f57db8792fff06a0beba0ed43efc3805771e39f06a"; + disabled = pythonOlder "3.6"; + + src = fetchFromGitHub { + owner = pname; + repo = pname; + rev = "v${version}"; + sha256 = "sha256-lS/98DRpJH1UGGNzwqVVUJOeul+BX+I3e+ysmC0oL3I="; }; - doCheck = false; - propagatedBuildInputs = [ requests six requests_oauthlib ]; + propagatedBuildInputs = [ + aiohttp + oauthlib + requests + requests_oauthlib + ]; + + checkInputs = [ + pytestCheckHook + vcrpy + ]; + + pythonImportsCheck = [ + "tweepy" + ]; meta = with lib; { homepage = "https://github.com/tweepy/tweepy"; - description = "Twitter library for python"; + description = "Twitter library for Python"; license = licenses.mit; maintainers = with maintainers; [ ]; }; diff --git a/pkgs/development/python-modules/twill/default.nix b/pkgs/development/python-modules/twill/default.nix index 36a7edcf7de8..febb0f87d440 100644 --- a/pkgs/development/python-modules/twill/default.nix +++ b/pkgs/development/python-modules/twill/default.nix @@ -1,4 +1,4 @@ -{ lib, buildPythonPackage, fetchPypi, isPy3k, nose +{ lib, buildPythonPackage, fetchPypi, nose , lxml , requests , pyparsing diff --git a/pkgs/development/python-modules/twitterapi/default.nix b/pkgs/development/python-modules/twitterapi/default.nix index cf3ec977d0ea..313e408ca50d 100644 --- a/pkgs/development/python-modules/twitterapi/default.nix +++ b/pkgs/development/python-modules/twitterapi/default.nix @@ -7,13 +7,14 @@ buildPythonPackage rec { pname = "twitterapi"; - version = "2.7.5"; + version = "2.7.7"; + format = "setuptools"; src = fetchFromGitHub { owner = "geduldig"; repo = "TwitterAPI"; rev = "v${version}"; - sha256 = "1s5q3gzd69syk8khlyy7ap8gpymvhgqrlv3vp6vdmwnaafjvvyy3"; + sha256 = "sha256-KEJ0lAg6Zi2vps+ZPTkT6ts87qnIBL9pFe1tPEzviCI="; }; propagatedBuildInputs = [ @@ -23,7 +24,10 @@ buildPythonPackage rec { # Tests are interacting with the Twitter API doCheck = false; - pythonImportsCheck = [ "TwitterAPI" ]; + + pythonImportsCheck = [ + "TwitterAPI" + ]; meta = with lib; { description = "Python wrapper for Twitter's REST and Streaming APIs"; diff --git a/pkgs/development/python-modules/txtorcon/default.nix b/pkgs/development/python-modules/txtorcon/default.nix index 23fa4735ef70..42568bbca111 100644 --- a/pkgs/development/python-modules/txtorcon/default.nix +++ b/pkgs/development/python-modules/txtorcon/default.nix @@ -1,6 +1,6 @@ { lib, python, buildPythonPackage, pythonOlder, fetchPypi, isPy3k, incremental, ipaddress, twisted , automat, zope_interface, idna, pyopenssl, service-identity, pytest, mock, lsof -, GeoIP, isPy27}: +, GeoIP}: buildPythonPackage rec { pname = "txtorcon"; diff --git a/pkgs/development/python-modules/typecode/libmagic.nix b/pkgs/development/python-modules/typecode/libmagic.nix index 9b652e664e52..5668b62e200f 100644 --- a/pkgs/development/python-modules/typecode/libmagic.nix +++ b/pkgs/development/python-modules/typecode/libmagic.nix @@ -4,7 +4,6 @@ , plugincode , file , zlib -, pytest }: buildPythonPackage rec { pname = "typecode-libmagic"; diff --git a/pkgs/development/python-modules/types-requests/default.nix b/pkgs/development/python-modules/types-requests/default.nix index 05fb1b2b9f43..f151b0086282 100644 --- a/pkgs/development/python-modules/types-requests/default.nix +++ b/pkgs/development/python-modules/types-requests/default.nix @@ -5,17 +5,20 @@ buildPythonPackage rec { pname = "types-requests"; - version = "2.25.11"; + version = "2.26.0"; + format = "setuptools"; src = fetchPypi { inherit pname version; - sha256 = "sha256-snkoTlH2aOOO4S2WZeTXiQifUy3CoL5KFQjKDv2Yup4="; + sha256 = "sha256-317Iw0tBOkLrs45Plr3raAkLh1vfzFE43IKYnJVEWIM="; }; - # Modules doesn't have tests + # Module doesn't have tests doCheck = false; - pythonImportsCheck = [ "requests-stubs" ]; + pythonImportsCheck = [ + "requests-stubs" + ]; meta = with lib; { description = "Typing stubs for requests"; diff --git a/pkgs/development/python-modules/types-setuptools/default.nix b/pkgs/development/python-modules/types-setuptools/default.nix new file mode 100644 index 000000000000..512b5386625b --- /dev/null +++ b/pkgs/development/python-modules/types-setuptools/default.nix @@ -0,0 +1,27 @@ +{ lib +, buildPythonPackage +, fetchPypi +}: + +buildPythonPackage rec { + pname = "types-setuptools"; + version = "57.4.2"; + format = "setuptools"; + + src = fetchPypi { + inherit pname version; + sha256 = "1y0vx949wx5w4ra854ykwvgmdcwsb6v7jk29m4x1l79857sa16al"; + }; + + # Module doesn't have tests + doCheck = false; + + pythonImportsCheck = [ "setuptools-stubs" ]; + + meta = with lib; { + description = "Typing stubs for setuptools"; + homepage = "https://github.com/python/typeshed"; + license = licenses.asl20; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/types-toml/default.nix b/pkgs/development/python-modules/types-toml/default.nix new file mode 100644 index 000000000000..d87528c20324 --- /dev/null +++ b/pkgs/development/python-modules/types-toml/default.nix @@ -0,0 +1,27 @@ +{ lib +, buildPythonPackage +, fetchPypi +}: + +buildPythonPackage rec { + pname = "types-toml"; + version = "0.10.1"; + format = "setuptools"; + + src = fetchPypi { + inherit pname version; + sha256 = "1jqh0vki1hccj391gnxpblim429sj56npgq2z749f8v9ay6qy7sw"; + }; + + # Module doesn't have tests + doCheck = false; + + pythonImportsCheck = [ "toml-stubs" ]; + + meta = with lib; { + description = "Typing stubs for toml"; + homepage = "https://github.com/python/typeshed"; + license = licenses.asl20; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/typing-inspect/default.nix b/pkgs/development/python-modules/typing-inspect/default.nix index 4f09d6002d5c..1e5303b7b09e 100644 --- a/pkgs/development/python-modules/typing-inspect/default.nix +++ b/pkgs/development/python-modules/typing-inspect/default.nix @@ -3,7 +3,6 @@ , fetchPypi , typing-extensions , mypy-extensions -, isPy39 }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/unidecode/default.nix b/pkgs/development/python-modules/unidecode/default.nix index 694f10ba0875..f16fec644db0 100644 --- a/pkgs/development/python-modules/unidecode/default.nix +++ b/pkgs/development/python-modules/unidecode/default.nix @@ -7,7 +7,7 @@ buildPythonPackage rec { pname = "unidecode"; - version = "1.3.1"; + version = "1.3.2"; disabled = pythonOlder "3.5"; @@ -22,7 +22,9 @@ buildPythonPackage rec { pytestCheckHook ]; - pythonImportsCheck = [ "unidecode" ]; + pythonImportsCheck = [ + "unidecode" + ]; meta = with lib; { homepage = "https://pypi.python.org/pypi/Unidecode/"; diff --git a/pkgs/development/python-modules/urllib3/2.nix b/pkgs/development/python-modules/urllib3/2.nix index f1eea4c31d8d..a52e68eac5e3 100644 --- a/pkgs/development/python-modules/urllib3/2.nix +++ b/pkgs/development/python-modules/urllib3/2.nix @@ -13,7 +13,6 @@ , pytest-freezegun , pytest-timeout , pytestCheckHook -, pythonOlder , tornado , trustme }: diff --git a/pkgs/development/python-modules/urllib3/default.nix b/pkgs/development/python-modules/urllib3/default.nix index cf7afaa173e2..91bc6e68eb36 100644 --- a/pkgs/development/python-modules/urllib3/default.nix +++ b/pkgs/development/python-modules/urllib3/default.nix @@ -12,7 +12,6 @@ , pytest-freezegun , pytest-timeout , pytestCheckHook -, pythonOlder , tornado , trustme }: diff --git a/pkgs/development/python-modules/uvicorn/default.nix b/pkgs/development/python-modules/uvicorn/default.nix index 22e291c4b598..57c6bf925357 100644 --- a/pkgs/development/python-modules/uvicorn/default.nix +++ b/pkgs/development/python-modules/uvicorn/default.nix @@ -9,7 +9,6 @@ , httptools , python-dotenv , pyyaml -, requests , typing-extensions , uvloop , watchgod diff --git a/pkgs/development/python-modules/vcver/default.nix b/pkgs/development/python-modules/vcver/default.nix index a328cb104bc1..503a8f7df7e0 100644 --- a/pkgs/development/python-modules/vcver/default.nix +++ b/pkgs/development/python-modules/vcver/default.nix @@ -1,10 +1,12 @@ -{ lib, buildPythonPackage, fetchFromGitHub +{ lib +, buildPythonPackage +, fetchFromGitHub , packaging -, fetchurl, python }: +}: buildPythonPackage rec { pname = "vcver"; - version = "0.2.10"; + version = "0.2.12"; src = fetchFromGitHub { owner = "toumorokoshi"; diff --git a/pkgs/development/python-modules/vdirsyncer/default.nix b/pkgs/development/python-modules/vdirsyncer/default.nix index cdd8ff02b97e..edb61ccb7034 100644 --- a/pkgs/development/python-modules/vdirsyncer/default.nix +++ b/pkgs/development/python-modules/vdirsyncer/default.nix @@ -1,7 +1,6 @@ { lib , buildPythonPackage , fetchPypi -, fetchpatch , pythonOlder , click , click-log diff --git a/pkgs/development/python-modules/velbus-aio/default.nix b/pkgs/development/python-modules/velbus-aio/default.nix index ac389b0912d4..506f775abd31 100644 --- a/pkgs/development/python-modules/velbus-aio/default.nix +++ b/pkgs/development/python-modules/velbus-aio/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "velbus-aio"; - version = "2021.10.7"; + version = "2021.11.6"; disabled = pythonOlder "3.7"; @@ -17,7 +17,7 @@ buildPythonPackage rec { owner = "Cereal2nd"; repo = pname; rev = version; - sha256 = "sha256-xhJKgOOi5N2oxTpy5KlRtmtb2nepp/k7TvEppkIbtWA="; + sha256 = "sha256-Vm/CgrSSCU76CzAxCtpMsE8/GtPE9SlfqDyzYp4Gc8E="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/vispy/default.nix b/pkgs/development/python-modules/vispy/default.nix index 666fcd8dbb8d..c13f7b6d7d3a 100644 --- a/pkgs/development/python-modules/vispy/default.nix +++ b/pkgs/development/python-modules/vispy/default.nix @@ -16,11 +16,11 @@ buildPythonPackage rec { pname = "vispy"; - version = "0.9.1"; + version = "0.9.3"; src = fetchPypi { inherit pname version; - sha256 = "75e2923792b937fbb0eb817716430613b6a2b37331cffb13bf623913a76b1da1"; + sha256 = "bc3aec042637947d4e999121bab224077a6f7ede4af745102f41737f7c81c05a"; }; patches = [ diff --git a/pkgs/development/python-modules/vowpalwabbit/default.nix b/pkgs/development/python-modules/vowpalwabbit/default.nix index 1a1c6a33acb3..4cd6fb1128cd 100644 --- a/pkgs/development/python-modules/vowpalwabbit/default.nix +++ b/pkgs/development/python-modules/vowpalwabbit/default.nix @@ -6,7 +6,6 @@ , python , zlib , ncurses -, pytest , docutils , pygments , numpy diff --git a/pkgs/development/python-modules/vsts-cd-manager/default.nix b/pkgs/development/python-modules/vsts-cd-manager/default.nix index 5946fec05b75..b1de4105668a 100644 --- a/pkgs/development/python-modules/vsts-cd-manager/default.nix +++ b/pkgs/development/python-modules/vsts-cd-manager/default.nix @@ -1,5 +1,4 @@ -{ lib, buildPythonPackage, fetchPypi, isPy27 -, msrest +{ lib, buildPythonPackage, fetchPypi, msrest , mock }: diff --git a/pkgs/development/python-modules/vt-py/default.nix b/pkgs/development/python-modules/vt-py/default.nix index 1542a447a1bc..fcd2c2452fe6 100644 --- a/pkgs/development/python-modules/vt-py/default.nix +++ b/pkgs/development/python-modules/vt-py/default.nix @@ -10,7 +10,8 @@ buildPythonPackage rec { pname = "vt-py"; - version = "0.7.6"; + version = "0.8.0"; + format = "setuptools"; disabled = pythonOlder "3.6"; @@ -18,7 +19,7 @@ buildPythonPackage rec { owner = "VirusTotal"; repo = pname; rev = version; - sha256 = "sha256-Gf3hNCXioaLiQ0fZWPe9PO2YQeId4ZLmWsSZ5WvjSk0="; + sha256 = "sha256-j9TlZDzl9sWFPt8TeuyoJi01JhyPBVXs1w3YJMoVvLw="; }; propagatedBuildInputs = [ @@ -36,7 +37,9 @@ buildPythonPackage rec { --replace "'pytest-runner'" "" ''; - pythonImportsCheck = [ "vt" ]; + pythonImportsCheck = [ + "vt" + ]; meta = with lib; { description = "Python client library for VirusTotal"; diff --git a/pkgs/development/python-modules/watermark/default.nix b/pkgs/development/python-modules/watermark/default.nix new file mode 100644 index 000000000000..2bbb281f081b --- /dev/null +++ b/pkgs/development/python-modules/watermark/default.nix @@ -0,0 +1,38 @@ +{ lib +, fetchFromGitHub +, buildPythonPackage +, importlib-metadata +, ipython +, pytestCheckHook +, pythonOlder +}: + +buildPythonPackage rec { + pname = "watermark"; + version = "2.2.0"; + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "rasbt"; + repo = pname; + rev = "d3553b68dd30ac5b0951a6fae6083236e4c7f3bd"; + sha256 = "0w2mzi344x1mrv8d9jca67bhig34jissr9sqrk68gpg5n10alblb"; + }; + + propagatedBuildInputs = [ + ipython + ] ++ lib.optionals (pythonOlder "3.8") [ importlib-metadata ]; + + checkInputs = [ + pytestCheckHook + ]; + + pythonImportsCheck = [ "watermark" ]; + + meta = with lib; { + description = "IPython extension for printing date and time stamps, version numbers, and hardware information."; + homepage = "https://github.com/rasbt/watermark"; + license = licenses.bsd3; + maintainers = with maintainers; [ nphilou ]; + }; +} diff --git a/pkgs/development/python-modules/wavefile/default.nix b/pkgs/development/python-modules/wavefile/default.nix new file mode 100644 index 000000000000..3090ee815440 --- /dev/null +++ b/pkgs/development/python-modules/wavefile/default.nix @@ -0,0 +1,64 @@ +{ lib +, stdenv +, buildPythonPackage +, fetchFromGitHub +, setuptools +, pyaudio +, numpy +, libsndfile +, substituteAll +}: + +buildPythonPackage rec { + pname = "wavefile"; + version = "1.5"; + + src = fetchFromGitHub { + owner = "vokimon"; + repo = "python-wavefile"; + rev = "python-wavefile-${version}"; + sha256 = "9sHj1gb93mCVpejRGSdLJzeFDCeTflZctE7kMWfqFrE="; + }; + + nativeBuildInputs = [ + setuptools + ]; + + buildInputs = [ + pyaudio + libsndfile + ]; + + propagatedBuildInputs = [ + numpy + ]; + + checkInputs = [ + pyaudio + numpy + libsndfile + ]; + + patches = [ + # Fix check error + # OSError: libsndfile.so.1: cannot open shared object file: No such file or directory + (substituteAll { + src = ./libsndfile.py.patch; + libsndfile = "${lib.getLib libsndfile}/lib/libsndfile${stdenv.hostPlatform.extensions.sharedLibrary}"; + }) + ]; + + doCheck = false; # all test files (test/wavefileTest.py) are failing + + pythonImportsCheck = [ + "wavefile" + ]; + + meta = with lib; { + description = "Pythonic libsndfile wrapper to read and write audio files"; + homepage = "https://github.com/vokimon/python-wavefile"; + changelog = "https://github.com/vokimon/python-wavefile#version-history"; + maintainers = with maintainers; [ yuu ]; + license = licenses.gpl3Plus; + }; +} diff --git a/pkgs/development/python-modules/wavefile/libsndfile.py.patch b/pkgs/development/python-modules/wavefile/libsndfile.py.patch new file mode 100644 index 000000000000..6e10e6b6c03c --- /dev/null +++ b/pkgs/development/python-modules/wavefile/libsndfile.py.patch @@ -0,0 +1,18 @@ +diff --git a/wavefile/libsndfile.py b/wavefile/libsndfile.py +index 67f0a46..ce066ee 100644 +--- a/wavefile/libsndfile.py ++++ b/wavefile/libsndfile.py +@@ -19,11 +19,11 @@ import numpy as np + if sys.platform == "win32": + dllName = 'libsndfile-1' + elif "linux" in sys.platform: +- dllName = 'libsndfile.so.1' ++ dllName = '@libsndfile@' + elif "cygwin" in sys.platform: + dllName = 'libsndfile-1.dll' + elif "darwin" in sys.platform: +- dllName = 'libsndfile.dylib' ++ dllName = '@libsndfile@' + else: + dllName = 'libsndfile' + diff --git a/pkgs/development/python-modules/werkzeug/1.nix b/pkgs/development/python-modules/werkzeug/1.nix index faa07b496237..c03cc6935d2f 100644 --- a/pkgs/development/python-modules/werkzeug/1.nix +++ b/pkgs/development/python-modules/werkzeug/1.nix @@ -2,7 +2,6 @@ , itsdangerous, hypothesis , pytestCheckHook, requests , pytest-timeout -, isPy3k }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/wfuzz/default.nix b/pkgs/development/python-modules/wfuzz/default.nix index f42df0054952..e037757691c7 100644 --- a/pkgs/development/python-modules/wfuzz/default.nix +++ b/pkgs/development/python-modules/wfuzz/default.nix @@ -1,14 +1,12 @@ { buildPythonPackage , chardet , colorama -, configparser , fetchFromGitHub , future , isPy27 , lib , mock , netaddr -, pkgs , pycurl , pyparsing , pytest diff --git a/pkgs/development/python-modules/winsspi/default.nix b/pkgs/development/python-modules/winsspi/default.nix index 02156ba17e50..ea880234c0bf 100644 --- a/pkgs/development/python-modules/winsspi/default.nix +++ b/pkgs/development/python-modules/winsspi/default.nix @@ -2,7 +2,6 @@ , buildPythonPackage , fetchPypi , minikerberos -, pythonAtLeast }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/worldengine/default.nix b/pkgs/development/python-modules/worldengine/default.nix index 13ce4bc873d6..fed9a3c9007f 100644 --- a/pkgs/development/python-modules/worldengine/default.nix +++ b/pkgs/development/python-modules/worldengine/default.nix @@ -1,6 +1,5 @@ { lib , buildPythonPackage -, pythonOlder , isPy27 , fetchFromGitHub , noise diff --git a/pkgs/development/python-modules/xarray/default.nix b/pkgs/development/python-modules/xarray/default.nix index ee07adeb9d5b..602bbac89aec 100644 --- a/pkgs/development/python-modules/xarray/default.nix +++ b/pkgs/development/python-modules/xarray/default.nix @@ -11,12 +11,12 @@ buildPythonPackage rec { pname = "xarray"; - version = "0.19.0"; + version = "0.20.1"; disabled = !isPy3k; src = fetchPypi { inherit pname version; - sha256 = "3a365ce09127fc841ba88baa63f37ca61376ffe389a6c5e66d52f2c88c23a62b"; + sha256 = "9c0bffd8b55fdef277f8f6c817153eb51fa4e58653a7ad92eaed9984164b7bdb"; }; nativeBuildInputs = [ setuptools-scm ]; diff --git a/pkgs/development/python-modules/xgboost/default.nix b/pkgs/development/python-modules/xgboost/default.nix index 1045b86a4441..3717ca2473c3 100644 --- a/pkgs/development/python-modules/xgboost/default.nix +++ b/pkgs/development/python-modules/xgboost/default.nix @@ -6,7 +6,6 @@ , scikit-learn , stdenv , xgboost -, substituteAll , pandas , matplotlib , graphviz diff --git a/pkgs/development/python-modules/xkbcommon/default.nix b/pkgs/development/python-modules/xkbcommon/default.nix new file mode 100644 index 000000000000..580ad3921905 --- /dev/null +++ b/pkgs/development/python-modules/xkbcommon/default.nix @@ -0,0 +1,38 @@ +{ lib +, buildPythonPackage +, fetchPypi +, python +, cffi +, pkg-config +, libxkbcommon +, pytestCheckHook +}: + +buildPythonPackage rec { + pname = "xkbcommon"; + version = "0.4"; + + src = fetchPypi { + inherit pname version; + sha256 = "V5LMaX5TPhk9x4ZA4MGFzDhUiC6NKPo4uTbW6Q7mdVw="; + }; + + nativeBuildInputs = [ pkg-config ]; + propagatedNativeBuildInputs = [ cffi ]; + buildInputs = [ libxkbcommon ]; + propagatedBuildInputs = [ cffi ]; + checkInputs = [ pytestCheckHook ]; + + postBuild = '' + ${python.interpreter} xkbcommon/ffi_build.py + ''; + + pythonImportsCheck = [ "xkbcommon" ]; + + meta = with lib; { + homepage = "https://github.com/sde1000/python-xkbcommon"; + description = "Python bindings for libxkbcommon using cffi"; + license = licenses.mit; + maintainers = with maintainers; [ chvp ]; + }; +} diff --git a/pkgs/development/python-modules/xknx/default.nix b/pkgs/development/python-modules/xknx/default.nix index 336d39e3c956..f28a5c6a72a6 100644 --- a/pkgs/development/python-modules/xknx/default.nix +++ b/pkgs/development/python-modules/xknx/default.nix @@ -11,14 +11,14 @@ buildPythonPackage rec { pname = "xknx"; - version = "0.18.9"; + version = "0.18.12"; disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "XKNX"; repo = pname; rev = version; - sha256 = "1dw1dqhd790wsa6v7bpcv921zf1y544ry7drwcfdcmprsm7hs42j"; + sha256 = "sha256-Wk6+IRIGMaOPOEVEyzalBKyK88Y2yfKKo6T0fKxeOOE="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/yamale/default.nix b/pkgs/development/python-modules/yamale/default.nix index f590e8d896c0..05958ab51125 100644 --- a/pkgs/development/python-modules/yamale/default.nix +++ b/pkgs/development/python-modules/yamale/default.nix @@ -9,7 +9,8 @@ buildPythonPackage rec { pname = "yamale"; - version = "3.0.8"; + version = "4.0.2"; + format = "setuptools"; disabled = pythonOlder "3.6"; @@ -17,7 +18,7 @@ buildPythonPackage rec { owner = "23andMe"; repo = pname; rev = version; - sha256 = "0bn0himn5fwndaxn205s55bdc4np7lhd940i0lkv0m7ybhbw7dap"; + sha256 = "sha256-hFBU3o3HpL0Schgzcx3oYq0IAUVGKThIfEteYcFbLnk="; }; propagatedBuildInputs = [ @@ -29,7 +30,9 @@ buildPythonPackage rec { pytestCheckHook ]; - pythonImportsCheck = [ "yamale" ]; + pythonImportsCheck = [ + "yamale" + ]; meta = with lib; { description = "A schema and validator for YAML"; diff --git a/pkgs/development/python-modules/yappi/default.nix b/pkgs/development/python-modules/yappi/default.nix index b96d4efd44b8..af650f6db3b8 100644 --- a/pkgs/development/python-modules/yappi/default.nix +++ b/pkgs/development/python-modules/yappi/default.nix @@ -1,23 +1,38 @@ -{ lib, buildPythonPackage, fetchFromGitHub, gevent, isPy27, python }: +{ lib +, buildPythonPackage +, fetchFromGitHub +, gevent +, isPy27 +, python +}: buildPythonPackage rec { pname = "yappi"; - version = "1.3.0"; + version = "1.3.2"; + disabled = isPy27; # invalid syntax src = fetchFromGitHub { owner = "sumerc"; repo = pname; - rev = "30f94024a0e2e4fa21c220de6a0dc97b4cb2c319"; - sha256 = "1kvwl3y3c2hivf9y2x1q1s8a2y724iwqd1krq6ryvsbg3inyh8qw"; + rev = "8bf7a650066f104f59c3cae4a189ec15e7d51c8c"; + sha256 = "1q8lr9n0lny2g3mssy3mksbl9m4k1kqn1a4yv1hfqsahxdvpw2dp"; }; patches = [ ./tests.patch ]; - checkInputs = [ gevent ]; + + checkInputs = [ + gevent + ]; + checkPhase = '' ${python.interpreter} run_tests.py ''; + pythonImportsCheck = [ + "yappi" + ]; + meta = with lib; { homepage = "https://github.com/sumerc/yappi"; description = "Python profiler that supports multithreading and measuring CPU time"; diff --git a/pkgs/development/python-modules/yarl/default.nix b/pkgs/development/python-modules/yarl/default.nix index a5aab308eab6..0e15f138daaf 100644 --- a/pkgs/development/python-modules/yarl/default.nix +++ b/pkgs/development/python-modules/yarl/default.nix @@ -1,7 +1,6 @@ { lib , buildPythonPackage , fetchPypi -, python , pythonOlder , idna , multidict diff --git a/pkgs/development/python-modules/yq/default.nix b/pkgs/development/python-modules/yq/default.nix index a9225d435437..78177488081e 100644 --- a/pkgs/development/python-modules/yq/default.nix +++ b/pkgs/development/python-modules/yq/default.nix @@ -1,5 +1,4 @@ { lib -, nixosTests , buildPythonPackage , fetchPypi , substituteAll diff --git a/pkgs/development/python-modules/ytmusicapi/default.nix b/pkgs/development/python-modules/ytmusicapi/default.nix index 8bf781ef3a42..9a86075c790e 100644 --- a/pkgs/development/python-modules/ytmusicapi/default.nix +++ b/pkgs/development/python-modules/ytmusicapi/default.nix @@ -1,19 +1,20 @@ { lib , buildPythonPackage -, isPy27 , fetchPypi +, pythonOlder , requests }: buildPythonPackage rec { pname = "ytmusicapi"; - version = "0.19.3"; + version = "0.19.4"; + format = "setuptools"; - disabled = isPy27; + disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "dfd0271f7177173cea9c255730151a10a2fe4a32f9accd2fe31e7645936c90c5"; + sha256 = "sha256-AAGUfa91f9aquPLQZs9kQDbZXrBrxjSBFdWIrxB5D/I="; }; propagatedBuildInputs = [ @@ -22,10 +23,12 @@ buildPythonPackage rec { doCheck = false; # requires network access - pythonImportsCheck = [ "ytmusicapi" ]; + pythonImportsCheck = [ + "ytmusicapi" + ]; meta = with lib; { - description = "Unofficial API for YouTube Music"; + description = "Python API for YouTube Music"; homepage = "https://github.com/sigma67/ytmusicapi"; license = licenses.mit; maintainers = with maintainers; [ dotlambda ]; diff --git a/pkgs/development/python-modules/zarr/default.nix b/pkgs/development/python-modules/zarr/default.nix index 0a8f13705eb5..9e5b05821295 100644 --- a/pkgs/development/python-modules/zarr/default.nix +++ b/pkgs/development/python-modules/zarr/default.nix @@ -12,12 +12,12 @@ buildPythonPackage rec { pname = "zarr"; - version = "2.10.1"; + version = "2.10.2"; disabled = isPy27; src = fetchPypi { inherit pname version; - sha256 = "29e90114f037d433752b3cf951e4a3cb6c6f67b6501a273439b4be4a824e4caf"; + sha256 = "5c6ae914ab9215631bb95c09e76b9b9b4fffa70fec0c7bca26b68387d858ebe2"; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/zeroconf/default.nix b/pkgs/development/python-modules/zeroconf/default.nix index 84e424cd3b08..fee7a9ff9a9b 100644 --- a/pkgs/development/python-modules/zeroconf/default.nix +++ b/pkgs/development/python-modules/zeroconf/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "zeroconf"; - version = "0.36.9"; + version = "0.36.12"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -19,7 +19,7 @@ buildPythonPackage rec { owner = "jstasiak"; repo = "python-zeroconf"; rev = version; - sha256 = "sha256-V2AiKmL3laA6Kd2lOXZ7f+7L08zMtDfvhLxayylp1CQ="; + sha256 = "sha256-W66tL5uVcOhdahtYDYS8WYKXiz58UL6yEUp0uL9u5SI="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/zha-quirks/default.nix b/pkgs/development/python-modules/zha-quirks/default.nix index ee0afa02733b..b7b07d23a5c5 100644 --- a/pkgs/development/python-modules/zha-quirks/default.nix +++ b/pkgs/development/python-modules/zha-quirks/default.nix @@ -9,13 +9,13 @@ buildPythonPackage rec { pname = "zha-quirks"; - version = "0.0.62"; + version = "0.0.63"; src = fetchFromGitHub { owner = "zigpy"; repo = "zha-device-handlers"; rev = version; - sha256 = "sha256-wXXdxE69EABrvJA8utrhLW4+8ixcyCraWHx2M3uE8mw="; + sha256 = "sha256-jAd/qT+uwylE/AOHFnkKWECHnxFFqgCtCp36mrqFZIE="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/zipp/1.nix b/pkgs/development/python-modules/zipp/1.nix index ab9603926770..82f100aaa0d1 100644 --- a/pkgs/development/python-modules/zipp/1.nix +++ b/pkgs/development/python-modules/zipp/1.nix @@ -5,7 +5,6 @@ , pytest , pytest-flake8 , more-itertools -, toml }: buildPythonPackage rec { diff --git a/pkgs/development/python-modules/zope_lifecycleevent/default.nix b/pkgs/development/python-modules/zope_lifecycleevent/default.nix index 809d8252cb2e..1b3e288ba255 100644 --- a/pkgs/development/python-modules/zope_lifecycleevent/default.nix +++ b/pkgs/development/python-modules/zope_lifecycleevent/default.nix @@ -4,7 +4,6 @@ , isPy3k , zope_event , zope_component -, zope_interface }: buildPythonPackage rec { diff --git a/pkgs/development/r-modules/bioc-annotation-packages.nix b/pkgs/development/r-modules/bioc-annotation-packages.nix index e73052e24c91..dca3263dd41d 100644 --- a/pkgs/development/r-modules/bioc-annotation-packages.nix +++ b/pkgs/development/r-modules/bioc-annotation-packages.nix @@ -4,14 +4,14 @@ # Rscript generate-r-packages.R bioc-annotation >new && mv new bioc-annotation-packages.nix { self, derive }: -let derive2 = derive { biocVersion = "3.13"; }; +let derive2 = derive { biocVersion = "3.14"; }; in with self; { - AHCytoBands = derive2 { name="AHCytoBands"; version="0.99.0"; sha256="0g92nz33rx14zl5can7s701bipdgz7rxqygvvc22c4a0qj52ijnq"; depends=[]; }; + AHCytoBands = derive2 { name="AHCytoBands"; version="0.99.1"; sha256="0svxxhj3mh5gqik45ikcxnlhnma8n1c0rv8pycj2034cb9ms1dbv"; depends=[]; }; AHEnsDbs = derive2 { name="AHEnsDbs"; version="1.1.2"; sha256="06phi519h709nabs09xqnfyqjilj1fzmxb272hy7gy8g6lvx3g7d"; depends=[AnnotationHubData ensembldb]; }; - AHLRBaseDbs = derive2 { name="AHLRBaseDbs"; version="1.0.0"; sha256="0qr12l940g0pkk8mcz63s17y68wk03vj7almgwlfsz04mzk303bj"; depends=[AnnotationHub]; }; - AHMeSHDbs = derive2 { name="AHMeSHDbs"; version="1.0.0"; sha256="1r9fvkfkzsy58qg3wmr9h1h4ycjpjyxmngnl3dmapp55rd7n49ns"; depends=[AnnotationHub]; }; + AHLRBaseDbs = derive2 { name="AHLRBaseDbs"; version="1.2.0"; sha256="0x82jcvza2vy0vi8pl0c55nsggpbrfgfxvqli38q29km8cdqcxmi"; depends=[AnnotationHub]; }; + AHMeSHDbs = derive2 { name="AHMeSHDbs"; version="1.2.0"; sha256="12a8wh671zvwknr47cbcmijpwjm13wyd7plmifkdpj0vqgc78q0a"; depends=[AnnotationHub]; }; AHPathbankDbs = derive2 { name="AHPathbankDbs"; version="0.99.5"; sha256="10wcrglm521xcrfbzc39dkbjvg1pkz0zq70vgnh68akiwmdirp89"; depends=[AnnotationHub]; }; - AHPubMedDbs = derive2 { name="AHPubMedDbs"; version="0.99.8"; sha256="0c9x07i3pmr7rd7i76hmzk2zjfi091p575q75kyy3jmxd0dpgcac"; depends=[AnnotationHub]; }; + AHPubMedDbs = derive2 { name="AHPubMedDbs"; version="1.2.0"; sha256="1lw5z7dblczmsz5mkq1fh51y82j23kbb1hkk14r27y863n22f2by"; depends=[AnnotationHub]; }; AHWikipathwaysDbs = derive2 { name="AHWikipathwaysDbs"; version="0.99.4"; sha256="0vz3p9sx36bwzl9rq0ffh7klbq13pv2yhgjq1cjk7ll8z226c0q4"; depends=[AnnotationHub]; }; BSgenome_Alyrata_JGI_v1 = derive2 { name="BSgenome.Alyrata.JGI.v1"; version="1.0.1"; sha256="062ap94m6s4w8clg1zlj223wmgbmq19yhksx9fcdcqrxr5kbfv85"; depends=[BSgenome]; }; BSgenome_Amellifera_BeeBase_assembly4 = derive2 { name="BSgenome.Amellifera.BeeBase.assembly4"; version="1.4.0"; sha256="02zs16q441zcbfp7xvv1gny5nn02ivfr8md1wh5s5rpnj6sdl6kj"; depends=[BSgenome]; }; @@ -71,10 +71,10 @@ in with self; { BSgenome_Hsapiens_UCSC_hg18_masked = derive2 { name="BSgenome.Hsapiens.UCSC.hg18.masked"; version="1.3.99"; sha256="031sr3y95c32igk3lrrsafdm9i1zprjran8gak06arqc0hvzbfk0"; depends=[BSgenome BSgenome_Hsapiens_UCSC_hg18]; }; BSgenome_Hsapiens_UCSC_hg19 = derive2 { name="BSgenome.Hsapiens.UCSC.hg19"; version="1.4.3"; sha256="06lx7q7i52lg3vkjkqy492z9ianzgi4nhs9m1jrxjjb4hgbnbyjv"; depends=[BSgenome]; }; BSgenome_Hsapiens_UCSC_hg19_masked = derive2 { name="BSgenome.Hsapiens.UCSC.hg19.masked"; version="1.3.993"; sha256="19533ihgad67bzhavycv6z708012ylz9cw1qdfmk2b7ikf3kiaz9"; depends=[BSgenome BSgenome_Hsapiens_UCSC_hg19]; }; - BSgenome_Hsapiens_UCSC_hg38 = derive2 { name="BSgenome.Hsapiens.UCSC.hg38"; version="1.4.3"; sha256="1k4ya5w0bgcqk06518ax803xfanw6x1qjzm6lsd3nplkjg5136f2"; depends=[BSgenome]; }; + BSgenome_Hsapiens_UCSC_hg38 = derive2 { name="BSgenome.Hsapiens.UCSC.hg38"; version="1.4.4"; sha256="03xmh6q99nqjxz29m6j0ymxlk22jq0nlvpf4a2yhg3hgnxqkakh2"; depends=[BSgenome]; }; BSgenome_Hsapiens_UCSC_hg38_dbSNP151_major = derive2 { name="BSgenome.Hsapiens.UCSC.hg38.dbSNP151.major"; version="0.0.9999"; sha256="0290fk7jvlcb1mh6nlyqagqskfh0dvaysj1d6s15bgygnlm3r726"; depends=[BSgenome]; }; BSgenome_Hsapiens_UCSC_hg38_dbSNP151_minor = derive2 { name="BSgenome.Hsapiens.UCSC.hg38.dbSNP151.minor"; version="0.0.9999"; sha256="1xw8vckhsak35r942yyvlrpbhb2w4vzah8wfgmn3vyj1zklk3913"; depends=[BSgenome]; }; - BSgenome_Hsapiens_UCSC_hg38_masked = derive2 { name="BSgenome.Hsapiens.UCSC.hg38.masked"; version="1.3.993"; sha256="1ncsfa5nialkzllxdj9h5c48hrcv7vrvh7wfnw32y6bqdzg4rwhs"; depends=[BSgenome BSgenome_Hsapiens_UCSC_hg38]; }; + BSgenome_Hsapiens_UCSC_hg38_masked = derive2 { name="BSgenome.Hsapiens.UCSC.hg38.masked"; version="1.4.4"; sha256="0ac5c265pgq1yzyp655ix0awdszzxf3mhrp0qsfsb73msqb2s99n"; depends=[BSgenome BSgenome_Hsapiens_UCSC_hg38]; }; BSgenome_Mdomestica_UCSC_monDom5 = derive2 { name="BSgenome.Mdomestica.UCSC.monDom5"; version="1.4.2"; sha256="16kzb66kjpmf9j92pwh98ah5rhrnfyzdpr0rk659zham6dzga9ck"; depends=[BSgenome]; }; BSgenome_Mfascicularis_NCBI_5_0 = derive2 { name="BSgenome.Mfascicularis.NCBI.5.0"; version="1.4.2"; sha256="1lrdj7aibx4i60hpbaqgk3qir9zjs67mxdgp5jmgmw7gf2nwyn3x"; depends=[BSgenome]; }; BSgenome_Mfuro_UCSC_musFur1 = derive2 { name="BSgenome.Mfuro.UCSC.musFur1"; version="1.4.1"; sha256="0c0569a1k36sk0vzf7afhnfm0n2nwcdp3dc88s1hghpg7lwi9g9j"; depends=[BSgenome]; }; @@ -84,8 +84,9 @@ in with self; { BSgenome_Mmulatta_UCSC_rheMac3 = derive2 { name="BSgenome.Mmulatta.UCSC.rheMac3"; version="1.4.0"; sha256="0r3v4p567rxcczwqi7zdz7pmdiffgrq83j488libdb4s0hdg5jmi"; depends=[BSgenome]; }; BSgenome_Mmulatta_UCSC_rheMac3_masked = derive2 { name="BSgenome.Mmulatta.UCSC.rheMac3.masked"; version="1.3.99"; sha256="0k3j40hrys60qdij5rsxdzyx9bfmryaki5p7i4d5m0xmldlk9anr"; depends=[BSgenome BSgenome_Mmulatta_UCSC_rheMac3]; }; BSgenome_Mmulatta_UCSC_rheMac8 = derive2 { name="BSgenome.Mmulatta.UCSC.rheMac8"; version="1.4.2"; sha256="18z6vl89jkjzvppz3r93b2s32l17hz6pfp36wv5wvhm0c0rhnhmw"; depends=[BSgenome]; }; - BSgenome_Mmusculus_UCSC_mm10 = derive2 { name="BSgenome.Mmusculus.UCSC.mm10"; version="1.4.0"; sha256="12s0nm2na9brjad4rn9l7d3db2aj8qa1xvz0y1k7gk08wayb6bkf"; depends=[BSgenome]; }; - BSgenome_Mmusculus_UCSC_mm10_masked = derive2 { name="BSgenome.Mmusculus.UCSC.mm10.masked"; version="1.3.99"; sha256="12d7fkzh0b39b8f6qbgx07x5bmab91is4y846lp4zpbm3iya01g9"; depends=[BSgenome BSgenome_Mmusculus_UCSC_mm10]; }; + BSgenome_Mmusculus_UCSC_mm10 = derive2 { name="BSgenome.Mmusculus.UCSC.mm10"; version="1.4.3"; sha256="1vprkywr72nqf847vzmgymylcdb45g4hy30fwx6fzwddkyzh5xnw"; depends=[BSgenome]; }; + BSgenome_Mmusculus_UCSC_mm10_masked = derive2 { name="BSgenome.Mmusculus.UCSC.mm10.masked"; version="1.4.3"; sha256="04352r264jmpm5abbcyylz0axw24sm58ki3xvp434kp3cfdx32gc"; depends=[BSgenome BSgenome_Mmusculus_UCSC_mm10]; }; + BSgenome_Mmusculus_UCSC_mm39 = derive2 { name="BSgenome.Mmusculus.UCSC.mm39"; version="1.4.3"; sha256="0rpxdaa5w0p841kl5h6ngb49zr9q33ad0zgnw9xdpp1vfh0l47xm"; depends=[BSgenome]; }; BSgenome_Mmusculus_UCSC_mm8 = derive2 { name="BSgenome.Mmusculus.UCSC.mm8"; version="1.4.0"; sha256="1al34aa11d6kr0cr4xrabix1xmqc96zzgik5p4yc8r0rba3n100a"; depends=[BSgenome]; }; BSgenome_Mmusculus_UCSC_mm8_masked = derive2 { name="BSgenome.Mmusculus.UCSC.mm8.masked"; version="1.3.99"; sha256="1a2ywmy96cbwmvbdid73c0kln56qrbd7ipfzkzl97f56k3g985j5"; depends=[BSgenome BSgenome_Mmusculus_UCSC_mm8]; }; BSgenome_Mmusculus_UCSC_mm9 = derive2 { name="BSgenome.Mmusculus.UCSC.mm9"; version="1.4.0"; sha256="1birqw30g2azimxpnjfzmkphan7x131yy8b9h85lfz5fjdg7841i"; depends=[BSgenome]; }; @@ -118,6 +119,7 @@ in with self; { BSgenome_Vvinifera_URGI_IGGP12Xv0 = derive2 { name="BSgenome.Vvinifera.URGI.IGGP12Xv0"; version="0.1"; sha256="1m8mqkiqs7291hccb8pfyf2yxpky45qr6j3d9wkvp9x3ra3h0yxf"; depends=[BSgenome]; }; BSgenome_Vvinifera_URGI_IGGP12Xv2 = derive2 { name="BSgenome.Vvinifera.URGI.IGGP12Xv2"; version="0.1"; sha256="1saavsi75gw33jphhm3qb5psyfrv850ss4cmqr4i7aw1kc0fvs1j"; depends=[BSgenome]; }; BSgenome_Vvinifera_URGI_IGGP8X = derive2 { name="BSgenome.Vvinifera.URGI.IGGP8X"; version="0.1"; sha256="0v0hi2pbbi5ynd92bvbv4bzr7bgv48kvyz62hdv7k9gh7s5pg0id"; depends=[BSgenome]; }; + CTCF = derive2 { name="CTCF"; version="0.99.4"; sha256="1xp10ra53s59nznnxlgw115j46yg5sy13z6wmhqzv6y789s3p49k"; depends=[]; }; ChemmineDrugs = derive2 { name="ChemmineDrugs"; version="1.0.2"; sha256="0l47ac6lkycmghra2cbcdcxcv47ari8xg6lxpzilvkf4n6ld6064"; depends=[BiocGenerics ChemmineR RSQLite]; }; DO_db = derive2 { name="DO.db"; version="2.9"; sha256="10bqqa124l61ivzy4mdd3z3ar9a6537qbxw23pc4y9w8a6dwnavn"; depends=[AnnotationDbi]; }; ENCODExplorerData = derive2 { name="ENCODExplorerData"; version="0.99.5"; sha256="00gfm5l8pxrfs4cw4jlw6n0cz5s31isg69k833n89800v26w3kvh"; depends=[data_table jsonlite RCurl]; }; @@ -139,9 +141,10 @@ in with self; { FDb_UCSC_snp137common_hg19 = derive2 { name="FDb.UCSC.snp137common.hg19"; version="1.0.0"; sha256="1q1r7rk29q0zlzxz6fvfy1kjfli6wxzvhvhhfnf3z4ksy5332q63"; depends=[AnnotationDbi GenomicFeatures]; }; FDb_UCSC_tRNAs = derive2 { name="FDb.UCSC.tRNAs"; version="1.0.1"; sha256="1dymdalx9fzrplxyc0fd9faa4r5jimi7zyry9k65lyz1pabpkwqz"; depends=[AnnotationDbi GenomicFeatures]; }; GGHumanMethCancerPanelv1_db = derive2 { name="GGHumanMethCancerPanelv1.db"; version="1.4.1"; sha256="0ag1pkbh4mx4aplfrrz1q4f4cl05mczq9pcsfkd1071qk51dcwvx"; depends=[AnnotationDbi AnnotationForge org_Hs_eg_db]; }; - GO_db = derive2 { name="GO.db"; version="3.13.0"; sha256="14apqisww807wcj93slrgijclb99ck94li0q12cb24wrs15q885x"; depends=[AnnotationDbi]; }; - GenomeInfoDbData = derive2 { name="GenomeInfoDbData"; version="1.2.6"; sha256="0c8zz7qdraci9lm39m0brhyghy963wchnw97bd9nksphlpg9l809"; depends=[]; }; - GenomicState = derive2 { name="GenomicState"; version="0.99.9"; sha256="0qpa77bsycm3y82jrxq7r27gsygb1qbhkakz3cln3jv3sfkf0aj7"; depends=[AnnotationDbi AnnotationHub bumphunter derfinder GenomeInfoDb GenomicFeatures IRanges org_Hs_eg_db rtracklayer]; }; + GO_db = derive2 { name="GO.db"; version="3.14.0"; sha256="1ryqhzyxs49ffhjcml4dlb88l1gpf85icba7n92psrk2ls0sdl25"; depends=[AnnotationDbi]; }; + GeneSummary = derive2 { name="GeneSummary"; version="0.99.3"; sha256="0za1cy8kz8all8g5wk3475lvzwp25wq7b7p0568didfif88w5pj2"; depends=[]; }; + GenomeInfoDbData = derive2 { name="GenomeInfoDbData"; version="1.2.7"; sha256="11qrdcqlrv5n5wfsfz1i3v9cnyvkymfx7ir1dgdg1n1yvp8blz11"; depends=[]; }; + GenomicState = derive2 { name="GenomicState"; version="0.99.15"; sha256="1r7z3n6wyrd2cclj5b7sg15wpmjdh9k5b1hjlw7jjx8j384l7l1h"; depends=[AnnotationDbi AnnotationHub bumphunter derfinder GenomeInfoDb GenomicFeatures IRanges org_Hs_eg_db rtracklayer]; }; Homo_sapiens = derive2 { name="Homo.sapiens"; version="1.3.1"; sha256="151vj7h5p1c8yd5swrchk46z469p135wk50hvkl0nhgndvy0jj01"; depends=[AnnotationDbi GenomicFeatures GO_db org_Hs_eg_db OrganismDbi TxDb_Hsapiens_UCSC_hg19_knownGene]; }; Hs6UG171_db = derive2 { name="Hs6UG171.db"; version="3.2.3"; sha256="034aady3hy8j9bm7pbl8l8h0gcfnzmpyxg9l9s1ky0pj7ryzr93a"; depends=[AnnotationDbi org_Hs_eg_db]; }; HsAgilentDesign026652_db = derive2 { name="HsAgilentDesign026652.db"; version="3.2.3"; sha256="0x6nxvzmc8k4qp382ca32y58awkxpg0b3kc7m1mz9iag6sq7c5vx"; depends=[AnnotationDbi org_Hs_eg_db]; }; @@ -164,18 +167,6 @@ in with self; { JASPAR2020 = derive2 { name="JASPAR2020"; version="0.99.10"; sha256="0nrp63z7q2ivv5h87f7inpp2qll2dfgj4227l4rbnzii38a2vfdr"; depends=[]; }; JazaeriMetaData_db = derive2 { name="JazaeriMetaData.db"; version="3.2.3"; sha256="04lvcmm4ybxkfwgbiwcnpyj6kpbd0gd7jz6ijlbbvv6zdgdmvykb"; depends=[AnnotationDbi org_Hs_eg_db]; }; LAPOINTE_db = derive2 { name="LAPOINTE.db"; version="3.2.3"; sha256="0960gy5p4ybs5zs6251cgc3nk5a9gsh1nh23gkbkr3gc8jddinfm"; depends=[AnnotationDbi org_Hs_eg_db]; }; - LRBase_Ath_eg_db = derive2 { name="LRBase.Ath.eg.db"; version="2.0.1"; sha256="1f9yp9rfaydzz24bhl795379clcinibi4kavxzzavrvqfvkrgw84"; depends=[LRBaseDbi RSQLite]; }; - LRBase_Bta_eg_db = derive2 { name="LRBase.Bta.eg.db"; version="2.0.1"; sha256="004ajnirlqlw5zknhv456z5ziiig57qmcdp3w2cr7izdk2d97lbc"; depends=[LRBaseDbi RSQLite]; }; - LRBase_Cel_eg_db = derive2 { name="LRBase.Cel.eg.db"; version="2.0.1"; sha256="0iazyqrqgc4g5kk25vzssfxjxfvp70mhnx4fpwcg73pfy4wizxjp"; depends=[LRBaseDbi RSQLite]; }; - LRBase_Dme_eg_db = derive2 { name="LRBase.Dme.eg.db"; version="2.0.1"; sha256="1czhw53163cmamigzy30kwa0h3pid95qq47pf6f3b4sy8x3sd9if"; depends=[LRBaseDbi RSQLite]; }; - LRBase_Dre_eg_db = derive2 { name="LRBase.Dre.eg.db"; version="2.0.1"; sha256="0xwzwhc1ksyp1k3xxd0mdk8bkw1npblwrpalnyd4awlx4lh6k8b5"; depends=[LRBaseDbi RSQLite]; }; - LRBase_Gga_eg_db = derive2 { name="LRBase.Gga.eg.db"; version="2.0.1"; sha256="1nkgli39szcjh09ywn1a3zbj0k5pqng9ixaqkl0yhqqy626vk0w0"; depends=[LRBaseDbi RSQLite]; }; - LRBase_Hsa_eg_db = derive2 { name="LRBase.Hsa.eg.db"; version="2.0.1"; sha256="0lvrjspmzjpx9q77lqwpqmr5jpqaqv8rjyfr3pxyv1d0kfdnqii0"; depends=[LRBaseDbi RSQLite]; }; - LRBase_Mmu_eg_db = derive2 { name="LRBase.Mmu.eg.db"; version="2.0.1"; sha256="105nmhlg80jwljkpn73cx4lc4nsxadcl4pfbyl8pj1ppk1cdj1dz"; depends=[LRBaseDbi RSQLite]; }; - LRBase_Pab_eg_db = derive2 { name="LRBase.Pab.eg.db"; version="2.0.1"; sha256="0p99lx34fgvknw6301r8r375w0mapsan7f8aqjd2jxvjaig2375s"; depends=[LRBaseDbi RSQLite]; }; - LRBase_Rno_eg_db = derive2 { name="LRBase.Rno.eg.db"; version="2.0.1"; sha256="1hpw675m2y6nm3i3mvh9whxlaz5zpvz4wr55rha7yisxfsj6qq9a"; depends=[LRBaseDbi RSQLite]; }; - LRBase_Ssc_eg_db = derive2 { name="LRBase.Ssc.eg.db"; version="2.0.1"; sha256="18pa9f16hn4awynbhmvrkdxdprr2dj0mip132sk1mfkxic2cf014"; depends=[LRBaseDbi RSQLite]; }; - LRBase_Xtr_eg_db = derive2 { name="LRBase.Xtr.eg.db"; version="2.0.1"; sha256="18bk6p405cpws0ynh0q17w5fmriplmamhy1rds5rc6hf05lr2sb8"; depends=[LRBaseDbi RSQLite]; }; LowMACAAnnotation = derive2 { name="LowMACAAnnotation"; version="0.99.3"; sha256="0ri301ci54s8wwkah1jccy5h44xg8yjk08j5b15qmdsm25hli4wm"; depends=[]; }; LymphoSeqDB = derive2 { name="LymphoSeqDB"; version="0.99.2"; sha256="1cdyn2imjh4zr23szndc4vwyiacxs1jsp14gil2dyq9aifa25qr7"; depends=[]; }; MafDb_1Kgenomes_phase1_GRCh38 = derive2 { name="MafDb.1Kgenomes.phase1.GRCh38"; version="3.10.0"; sha256="057531mvxip32lyqak4hh964ms0cil29p5cch5fpjw5vbbzidrlc"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; @@ -190,84 +181,9 @@ in with self; { MafDb_TOPMed_freeze5_hg38 = derive2 { name="MafDb.TOPMed.freeze5.hg38"; version="3.10.0"; sha256="0yd9r26l2s3ykw5d2lndnx4m1h401g7hsnkk0wywczdc1xa39y4n"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; MafDb_gnomAD_r2_1_GRCh38 = derive2 { name="MafDb.gnomAD.r2.1.GRCh38"; version="3.10.0"; sha256="1bshq6ncns7xdrpkkc84m4x6a1pnm3ssp02f0d23yhlkhh0h40zd"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; MafDb_gnomAD_r2_1_hs37d5 = derive2 { name="MafDb.gnomAD.r2.1.hs37d5"; version="3.10.0"; sha256="153dy3lx0islfdkmyik7lxp1w2yzb0bqmia673hlwi4rmvns112h"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; - MafDb_gnomAD_r3_0_GRCh38 = derive2 { name="MafDb.gnomAD.r3.0.GRCh38"; version="3.13.0"; sha256="0f1qjngpshdpdg6i05qh8pmr56x4wvx29ism3vsid099ammnxdca"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; MafDb_gnomADex_r2_1_GRCh38 = derive2 { name="MafDb.gnomADex.r2.1.GRCh38"; version="3.10.0"; sha256="1v0sdjmn9z8gqn4yj4v04zycj3ngr32r04zqmkp6y41hcgdr8lxw"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; MafDb_gnomADex_r2_1_hs37d5 = derive2 { name="MafDb.gnomADex.r2.1.hs37d5"; version="3.10.0"; sha256="0y42ncmilijdxsgqsmskz7gff3il3fdf2kpflknmz1z9kybzaday"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; - MafH5_gnomAD_r3_0_GRCh38 = derive2 { name="MafH5.gnomAD.r3.0.GRCh38"; version="3.13.0"; sha256="1hhm0qla0av6fcgrf4wivwfczs7b6a473qswii2axpxq7srbsgaz"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores HDF5Array IRanges rhdf5 S4Vectors]; }; MafH5_gnomAD_v3_1_1_GRCh38 = derive2 { name="MafH5.gnomAD.v3.1.1.GRCh38"; version="3.13.0"; sha256="1fqw3qv4cw043ifyrcddsq3z13y4gk12cg7j39bg1am3msa7zmbg"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores HDF5Array IRanges rhdf5 S4Vectors]; }; - MeSH_AOR_db = derive2 { name="MeSH.AOR.db"; version="1.15.1"; sha256="1d33krs3xs0pa14gm7haiaglnlx5z41m6gx92gg8ckfpblyz49q2"; depends=[MeSHDbi]; }; - MeSH_Aca_eg_db = derive2 { name="MeSH.Aca.eg.db"; version="1.15.1"; sha256="195hs3x0sfs4s5kry452r0fhnq19ayv82j4dr1394zr104r17kb1"; depends=[MeSHDbi]; }; - MeSH_Aga_PEST_eg_db = derive2 { name="MeSH.Aga.PEST.eg.db"; version="1.15.1"; sha256="1kyjhnfv3b0jxdali2v1wdqd1zkl9vsf2z9ba6dkhlm1hghsnv63"; depends=[MeSHDbi]; }; - MeSH_Ame_eg_db = derive2 { name="MeSH.Ame.eg.db"; version="1.15.1"; sha256="1szzcnf5fwaqpj2ra2b1xics971lwg3rnzdria8j3yl705zxnl3g"; depends=[MeSHDbi]; }; - MeSH_Aml_eg_db = derive2 { name="MeSH.Aml.eg.db"; version="1.15.1"; sha256="1pgfhm5qhm9d7s0sr4iij7272m2i6y9di51r137mrmpc5fcc1mmx"; depends=[MeSHDbi]; }; - MeSH_Ana_eg_db = derive2 { name="MeSH.Ana.eg.db"; version="1.15.1"; sha256="117sz11lg3kl90v7bkai3acyvcxjggar8fpgyac99369pinkqikp"; depends=[MeSHDbi]; }; - MeSH_Ani_FGSC_eg_db = derive2 { name="MeSH.Ani.FGSC.eg.db"; version="1.15.1"; sha256="1hwhvm7ip3kjdb31glasixqzwja37352x70id18n2bfbjgq4x3r2"; depends=[MeSHDbi]; }; - MeSH_Ath_eg_db = derive2 { name="MeSH.Ath.eg.db"; version="1.15.1"; sha256="12dmbr6aynxyfg0cv5jrshj27rmk89apbpsg1zxf7cmqkkvq8bcv"; depends=[MeSHDbi]; }; - MeSH_Bfl_eg_db = derive2 { name="MeSH.Bfl.eg.db"; version="1.15.1"; sha256="1y6r6hillawafxgxvkcffg8bx125ra6b4f9cclcz1n3qzqfnjj0s"; depends=[MeSHDbi]; }; - MeSH_Bsu_168_eg_db = derive2 { name="MeSH.Bsu.168.eg.db"; version="1.15.1"; sha256="0d363769blvq0hm3yzbff007sn3sq8fb4gay8qgrcj2jrnnd4wp4"; depends=[MeSHDbi]; }; - MeSH_Bta_eg_db = derive2 { name="MeSH.Bta.eg.db"; version="1.15.1"; sha256="0g9m2y209gl6nyn05j4fznnh21raz8xwj1if7zb1aixxzykqi313"; depends=[MeSHDbi]; }; - MeSH_Cal_SC5314_eg_db = derive2 { name="MeSH.Cal.SC5314.eg.db"; version="1.15.1"; sha256="1z3id2838fd14x9nib931cmjb0x339hq1izdr3gq8kc4yfvl40r5"; depends=[MeSHDbi]; }; - MeSH_Cbr_eg_db = derive2 { name="MeSH.Cbr.eg.db"; version="1.15.1"; sha256="0fbg3sv5addw9ad586nyh0vbwfdnjzwqnqxa8jz8plpmjn043wl0"; depends=[MeSHDbi]; }; - MeSH_Cel_eg_db = derive2 { name="MeSH.Cel.eg.db"; version="1.15.1"; sha256="19hp0f0vqlzdqbn9qs839b8sflbcww02k7fzsmyzpqd38kvhwf2w"; depends=[MeSHDbi]; }; - MeSH_Cfa_eg_db = derive2 { name="MeSH.Cfa.eg.db"; version="1.15.1"; sha256="19jjdp5cq1pisgk7nxwi8cdzjk44bbh02fjy027f50i6dnj75i7i"; depends=[MeSHDbi]; }; - MeSH_Cin_eg_db = derive2 { name="MeSH.Cin.eg.db"; version="1.15.1"; sha256="0y53q8q1ca93ri6msnjzj3m6rqangidfvvchirgk9pa4k67dh534"; depends=[MeSHDbi]; }; - MeSH_Cja_eg_db = derive2 { name="MeSH.Cja.eg.db"; version="1.15.1"; sha256="0jsbncm9ggi63fjng8nl08bhzajgjrckfq2ngqbcnmf8p1gzg60a"; depends=[MeSHDbi]; }; - MeSH_Cpo_eg_db = derive2 { name="MeSH.Cpo.eg.db"; version="1.15.1"; sha256="1w47fmy9akwxxsvdx7d1s0qdzafxyghl6lh33cy5jcb4bj525635"; depends=[MeSHDbi]; }; - MeSH_Cre_eg_db = derive2 { name="MeSH.Cre.eg.db"; version="1.15.1"; sha256="0bq8r70vv55shfgdx94qiympk0vf9rf7xr467bps82ks0kklzr7v"; depends=[MeSHDbi]; }; - MeSH_Dan_eg_db = derive2 { name="MeSH.Dan.eg.db"; version="1.15.1"; sha256="1k5dfwm5fn4zghaphsjs0f7jzjcdcay1afm2c09qyh7xv9m1cpry"; depends=[MeSHDbi]; }; - MeSH_Dda_3937_eg_db = derive2 { name="MeSH.Dda.3937.eg.db"; version="1.15.1"; sha256="0idh5djnz1wwxp09xpjwac4dhz6kvwp1l0j92195b0xwv4n11pzk"; depends=[MeSHDbi]; }; - MeSH_Ddi_AX4_eg_db = derive2 { name="MeSH.Ddi.AX4.eg.db"; version="1.15.1"; sha256="0aprxgrlz7hnk31fr6vqpprahjn07r48dnva9gszgyp740mx1m1d"; depends=[MeSHDbi]; }; - MeSH_Der_eg_db = derive2 { name="MeSH.Der.eg.db"; version="1.15.1"; sha256="0wbv1f5bsb3xl8rj1qndb0n77rmg2s9m5nl2f95naqaf3hfypsmd"; depends=[MeSHDbi]; }; - MeSH_Dgr_eg_db = derive2 { name="MeSH.Dgr.eg.db"; version="1.15.1"; sha256="07zzwf4aqpkvjmbbvzc6bq662frxblsx4l0ljna70gr4xb218swl"; depends=[MeSHDbi]; }; - MeSH_Dme_eg_db = derive2 { name="MeSH.Dme.eg.db"; version="1.15.1"; sha256="1fls5b3w6n2n9vy4fsvri74f6r2qmlrx8vlrgqmb7plxdp35q0jw"; depends=[MeSHDbi]; }; - MeSH_Dmo_eg_db = derive2 { name="MeSH.Dmo.eg.db"; version="1.15.1"; sha256="0fphjwbxnymf30ccppjyfgwz0pv5n1lwzm7h05lppk7a7f8ys665"; depends=[MeSHDbi]; }; - MeSH_Dpe_eg_db = derive2 { name="MeSH.Dpe.eg.db"; version="1.15.1"; sha256="0921dxba9crqml8in0hwnwlzcqvjhhi94mllbmksp8cwka48rzs8"; depends=[MeSHDbi]; }; - MeSH_Dre_eg_db = derive2 { name="MeSH.Dre.eg.db"; version="1.15.1"; sha256="087pcpbskgc59c04bn3201d4agy9vsma0r1wsf60zxr3l491yn6v"; depends=[MeSHDbi]; }; - MeSH_Dse_eg_db = derive2 { name="MeSH.Dse.eg.db"; version="1.15.1"; sha256="0drqyd131l7vr9v899hjvva4d5mmv7fbhmflgz49i2iy3360xz32"; depends=[MeSHDbi]; }; - MeSH_Dsi_eg_db = derive2 { name="MeSH.Dsi.eg.db"; version="1.15.1"; sha256="0i3j3392d690xkg7cfzqnw0s09q8mpiq2wfpifkk0hbxnc5aahwd"; depends=[MeSHDbi]; }; - MeSH_Dvi_eg_db = derive2 { name="MeSH.Dvi.eg.db"; version="1.15.1"; sha256="168jy0v39j2fpy59s3dpz0xs3axmnc7kb1dv88b5j1xccymkd3gl"; depends=[MeSHDbi]; }; - MeSH_Dya_eg_db = derive2 { name="MeSH.Dya.eg.db"; version="1.15.1"; sha256="1ibbh07nczp75f0x2mnq5mnli6fgg7mn2aqk434l3iwjx686mcpj"; depends=[MeSHDbi]; }; - MeSH_Eca_eg_db = derive2 { name="MeSH.Eca.eg.db"; version="1.15.1"; sha256="1b16fqx56sl1ask5hk3krw2p7ph5q9wg78zygbd1pbx04q95469r"; depends=[MeSHDbi]; }; - MeSH_Eco_K12_MG1655_eg_db = derive2 { name="MeSH.Eco.K12.MG1655.eg.db"; version="1.15.1"; sha256="0p3gf9hwr3hrzlczwr7lhwxnl46iqfz66dvz38h7c02bjlpjjdjd"; depends=[MeSHDbi]; }; - MeSH_Eco_O157_H7_Sakai_eg_db = derive2 { name="MeSH.Eco.O157.H7.Sakai.eg.db"; version="1.15.1"; sha256="0wda4hkzwfvkn51fchzpwgc5p9964yyfjg8bpvk2331zx9lsvgs2"; depends=[MeSHDbi]; }; - MeSH_Gga_eg_db = derive2 { name="MeSH.Gga.eg.db"; version="1.15.1"; sha256="0d72haww3zi1x06qllwnlsrwkwivn6z8ws9nkrnb24vn3saxv41b"; depends=[MeSHDbi]; }; - MeSH_Gma_eg_db = derive2 { name="MeSH.Gma.eg.db"; version="1.15.1"; sha256="1xbwkxn351yhjbc529y4fkj366a3pnk1b8s3h1ys5w8czz3szfn3"; depends=[MeSHDbi]; }; - MeSH_Hsa_eg_db = derive2 { name="MeSH.Hsa.eg.db"; version="1.15.1"; sha256="1cgfwp8hk40af0d5rzi3vsmvx22jp1nwsgyld1mzkry2i8ilbzyj"; depends=[MeSHDbi]; }; - MeSH_Laf_eg_db = derive2 { name="MeSH.Laf.eg.db"; version="1.15.1"; sha256="1r2bnakd47gq95s47rywhak7csz77zphml0zfrchi189kh01prg4"; depends=[MeSHDbi]; }; - MeSH_Lma_eg_db = derive2 { name="MeSH.Lma.eg.db"; version="1.15.1"; sha256="1x3rjw2hvzxaq68abyh8b9bw1zizkrqxj6pgd5d6ggcl8l0x1fnz"; depends=[MeSHDbi]; }; - MeSH_Mdo_eg_db = derive2 { name="MeSH.Mdo.eg.db"; version="1.15.1"; sha256="156dc2vssa8x0a0985fhyx7h5vaw4d3ingz0s09181ai9fxqc1jx"; depends=[MeSHDbi]; }; - MeSH_Mes_eg_db = derive2 { name="MeSH.Mes.eg.db"; version="1.15.1"; sha256="0a3gdmpp9y6s6aw7lyh7j25dahgmkb0azg7g57073fqwhgivs2mx"; depends=[MeSHDbi]; }; - MeSH_Mga_eg_db = derive2 { name="MeSH.Mga.eg.db"; version="1.15.1"; sha256="1gil8g9h8qyd0b4qmqrk7dakvjqwlychzld0wv20z7hipqas975d"; depends=[MeSHDbi]; }; - MeSH_Miy_eg_db = derive2 { name="MeSH.Miy.eg.db"; version="1.15.1"; sha256="1p1f6vk1f360zx4wkzcyczi4p4x6mgf4pfrvhslz4kn6xg0cnm73"; depends=[MeSHDbi]; }; - MeSH_Mml_eg_db = derive2 { name="MeSH.Mml.eg.db"; version="1.15.1"; sha256="16372gs4nh9cr18xy4nzssjmdarxbkx7c6208s4vx6232mbc1azl"; depends=[MeSHDbi]; }; - MeSH_Mmu_eg_db = derive2 { name="MeSH.Mmu.eg.db"; version="1.15.1"; sha256="1557vn9sy1a2picwj27gkajqp8qlqza0yqf69czimd1myskdicps"; depends=[MeSHDbi]; }; - MeSH_Mtr_eg_db = derive2 { name="MeSH.Mtr.eg.db"; version="1.15.1"; sha256="1gi2v9x0jja6ambdljp9m11g6yhd3wcfcjblgx58i42ix5h5mviw"; depends=[MeSHDbi]; }; - MeSH_Nle_eg_db = derive2 { name="MeSH.Nle.eg.db"; version="1.15.1"; sha256="1vplci90jb1cihwbxqkynqk9frr7j09gh80q020dhm24f3rwlfqk"; depends=[MeSHDbi]; }; - MeSH_Oan_eg_db = derive2 { name="MeSH.Oan.eg.db"; version="1.15.1"; sha256="1fmwfmws100qmg3wy25qg0s36nk81rwf6b1csvqg4vfy9p0r2pdw"; depends=[MeSHDbi]; }; - MeSH_Ocu_eg_db = derive2 { name="MeSH.Ocu.eg.db"; version="1.15.1"; sha256="019ydfl6dqymn8yk2n101rdrmyv82ypcbvwmslimdhnlk3bzrj3a"; depends=[MeSHDbi]; }; - MeSH_Oni_eg_db = derive2 { name="MeSH.Oni.eg.db"; version="1.15.1"; sha256="1jadbca3c3xw24p8zvrd3q7ijjrrfjxkf1bw08ay3a9gazqyv0rh"; depends=[MeSHDbi]; }; - MeSH_Osa_eg_db = derive2 { name="MeSH.Osa.eg.db"; version="1.15.1"; sha256="028lw4xjd1v7afp1l0xizswciy1hxhllrf9ij328si5a0kb3dxwc"; depends=[MeSHDbi]; }; - MeSH_PCR_db = derive2 { name="MeSH.PCR.db"; version="1.15.1"; sha256="1hdk3s3ixh1haqp70ww547cbnwhllk6fhc4fgriidw0jivbkawx1"; depends=[MeSHDbi]; }; - MeSH_Pab_eg_db = derive2 { name="MeSH.Pab.eg.db"; version="1.15.1"; sha256="00hy436bbk7jza00dv2xgnbji3k72x405n88pgd8d9rgj7cmqvjp"; depends=[MeSHDbi]; }; - MeSH_Pae_PAO1_eg_db = derive2 { name="MeSH.Pae.PAO1.eg.db"; version="1.15.1"; sha256="04pprh5m431cpk4whfsiqb8fglda82jk4d06nhlz9k9nd5x9np82"; depends=[MeSHDbi]; }; - MeSH_Pfa_3D7_eg_db = derive2 { name="MeSH.Pfa.3D7.eg.db"; version="1.15.1"; sha256="1a0q8xyhfvjvdsxq5hgh255q3rg823l1b8nyswnkai3sl3hq3szd"; depends=[MeSHDbi]; }; - MeSH_Pto_eg_db = derive2 { name="MeSH.Pto.eg.db"; version="1.15.1"; sha256="0z4l55029lrmvysj26vn97c690yyhji46axvxsdjvzwp8llhwy3m"; depends=[MeSHDbi]; }; - MeSH_Ptr_eg_db = derive2 { name="MeSH.Ptr.eg.db"; version="1.15.1"; sha256="1h1ci6y0hjii1r6gp24y2m7qqn8d0r954swbc9crb0i2mfak7l1a"; depends=[MeSHDbi]; }; - MeSH_Rno_eg_db = derive2 { name="MeSH.Rno.eg.db"; version="1.15.1"; sha256="1rfxbfz72xazay0rszhjvxxqry532dx72kkp5vd0pi44536kly49"; depends=[MeSHDbi]; }; - MeSH_Sce_S288c_eg_db = derive2 { name="MeSH.Sce.S288c.eg.db"; version="1.15.1"; sha256="100fcybyv4lsnxj23ndchhn25i2bfppk6w0y2lfnrla1vn8p5nnp"; depends=[MeSHDbi]; }; - MeSH_Sco_A32_eg_db = derive2 { name="MeSH.Sco.A32.eg.db"; version="1.15.1"; sha256="1y5nh82hbwh7higzg0fv4rkvxl2p988w7aznygaq5z3g1q15l9sp"; depends=[MeSHDbi]; }; - MeSH_Sil_eg_db = derive2 { name="MeSH.Sil.eg.db"; version="1.15.1"; sha256="09vj1ix13kxyb330s69nnig07a7cwyz7nasvv5kv83cnc27df92m"; depends=[MeSHDbi]; }; - MeSH_Spu_eg_db = derive2 { name="MeSH.Spu.eg.db"; version="1.15.1"; sha256="0gmpcabxs0d61krhyllyrb92x0xgr67jv2wc8qbjv8m8vpiynnxh"; depends=[MeSHDbi]; }; - MeSH_Ssc_eg_db = derive2 { name="MeSH.Ssc.eg.db"; version="1.15.1"; sha256="05ybk27chnxf3mqvngfzlrmnlpjdraqzd0qcsj6zmhsyx6j20qh5"; depends=[MeSHDbi]; }; - MeSH_Syn_eg_db = derive2 { name="MeSH.Syn.eg.db"; version="1.15.1"; sha256="1rkc9gv9an0zan04qalmyvry380yhf2vx8scfvck9jwkq5x05w97"; depends=[MeSHDbi]; }; - MeSH_Tbr_9274_eg_db = derive2 { name="MeSH.Tbr.9274.eg.db"; version="1.15.1"; sha256="1nak2sz25l8mc3f60h84519wm7lb8iamj9116mbf4b6ybdp0k4gd"; depends=[MeSHDbi]; }; - MeSH_Tgo_ME49_eg_db = derive2 { name="MeSH.Tgo.ME49.eg.db"; version="1.15.1"; sha256="16j9wiv0lgik94yp7vqgcc5lykjynn07sbvvq2llcyvr6n3l3gwy"; depends=[MeSHDbi]; }; - MeSH_Tgu_eg_db = derive2 { name="MeSH.Tgu.eg.db"; version="1.15.1"; sha256="0j0ygcrfx2df2q597wkkiqg9264n2v7bsh3kfvra9ma3wdxqlipd"; depends=[MeSHDbi]; }; - MeSH_Vvi_eg_db = derive2 { name="MeSH.Vvi.eg.db"; version="1.15.1"; sha256="0dnhjs43v9q42w82km5vvs8p8zniljvskiv946psy2z8l27q6srj"; depends=[MeSHDbi]; }; - MeSH_Xla_eg_db = derive2 { name="MeSH.Xla.eg.db"; version="1.15.1"; sha256="1n3kmkqgb8nnm13jrhn6dzpjcqgddf7k68vsm52bkg7dh3dfcn8v"; depends=[MeSHDbi]; }; - MeSH_Xtr_eg_db = derive2 { name="MeSH.Xtr.eg.db"; version="1.15.1"; sha256="19waylyzyga4zqygar6509gq36a8z36fbpz55msb0zsin24s0y82"; depends=[MeSHDbi]; }; - MeSH_Zma_eg_db = derive2 { name="MeSH.Zma.eg.db"; version="1.15.1"; sha256="0plldymwirg8hyj9yv5jw4ldrlnvf5dx60gymb8rgmmxvrmhay66"; depends=[MeSHDbi]; }; - MeSH_db = derive2 { name="MeSH.db"; version="1.15.1"; sha256="0ixlxcakcc9f6d3dzxfdda4nh5gnivqvbi9dw7c85c0145dgnpzx"; depends=[MeSHDbi]; }; MmAgilentDesign026655_db = derive2 { name="MmAgilentDesign026655.db"; version="3.2.3"; sha256="00d0yjcb5id7zacx4bzdwy4q6f4qvnnx8ph4d4xz1fmcbspz2qiz"; depends=[AnnotationDbi org_Mm_eg_db]; }; MoExExonProbesetLocation = derive2 { name="MoExExonProbesetLocation"; version="1.15.0"; sha256="0bvj3bji4bwwmxjz4b57n1aqypdibdmry30rfwmlxss1hav96sl7"; depends=[AnnotationDbi]; }; Mu15v1_db = derive2 { name="Mu15v1.db"; version="3.2.3"; sha256="0qchqkbx6ybijab8qhflxj33kwksfll1d3d3917vydjac9fzw1lz"; depends=[AnnotationDbi org_Mm_eg_db]; }; @@ -275,9 +191,9 @@ in with self; { Mus_musculus = derive2 { name="Mus.musculus"; version="1.3.1"; sha256="143zdf83gbfqhy8jm9df7gzhw5q3a64jrjrxrzjf0zd76j8s8j6y"; depends=[AnnotationDbi GenomicFeatures GO_db org_Mm_eg_db OrganismDbi TxDb_Mmusculus_UCSC_mm10_knownGene]; }; Norway981_db = derive2 { name="Norway981.db"; version="3.2.3"; sha256="04ngc2hilqi9m7933mnm7jcvkxlz68vqqh5b628db575vcxql9b9"; depends=[AnnotationDbi org_Hs_eg_db]; }; OperonHumanV3_db = derive2 { name="OperonHumanV3.db"; version="3.2.3"; sha256="082gff88cwk2p50q8g9bixggacaclgqcvk6w5dc11h9fkgvd160i"; depends=[AnnotationDbi org_Hs_eg_db]; }; - Orthology_eg_db = derive2 { name="Orthology.eg.db"; version="3.13.0"; sha256="0205lwgdh94ha4dsr4qm9ypa6i433swlqda5bgn1hrkgz0bizbnw"; depends=[AnnotationDbi]; }; + Orthology_eg_db = derive2 { name="Orthology.eg.db"; version="3.14.0"; sha256="0irfwj52dm2dqw0y7fpp2i3xxma347cz8s75r73dklgs1ra5rp3r"; depends=[AnnotationDbi]; }; PANTHER_db = derive2 { name="PANTHER.db"; version="1.0.11"; sha256="0ckhrbhcxf7lq1hz1lrkrb7djjsfy7m0abf3665aagk6vvzigxy8"; depends=[AnnotationDbi AnnotationHub BiocFileCache RSQLite]; }; - PFAM_db = derive2 { name="PFAM.db"; version="3.13.0"; sha256="1rc2vlfjxyrgx0csiiw8ambsc38c2yly1lzpnfq0lbrz3vm4r12n"; depends=[AnnotationDbi]; }; + PFAM_db = derive2 { name="PFAM.db"; version="3.14.0"; sha256="05nnjar0nljpmzz99hssmfm16y7lyy8vf6ncw823vyg8g5893h95"; depends=[AnnotationDbi]; }; POCRCannotation_db = derive2 { name="POCRCannotation.db"; version="3.2.3"; sha256="0ybvs4hrxpivdkhm0fxpib11vlxqqdk8prlyj78vj5qzyb3iy89d"; depends=[AnnotationDbi org_Hs_eg_db]; }; PartheenMetaData_db = derive2 { name="PartheenMetaData.db"; version="3.2.3"; sha256="0d37c5b7s3fgkkvg7sj7gl9ksrjk5pyyv54vkys8w3qwgsm8yrdz"; depends=[AnnotationDbi org_Hs_eg_db]; }; PolyPhen_Hsapiens_dbSNP131 = derive2 { name="PolyPhen.Hsapiens.dbSNP131"; version="1.0.2"; sha256="1kikygkli41sn3rqihz0924prmqg2264ifj29vmg1a7qccm0kf7c"; depends=[AnnotationDbi RSQLite VariantAnnotation]; }; @@ -302,12 +218,15 @@ in with self; { TxDb_Athaliana_BioMart_plantsmart22 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart22"; version="3.0.1"; sha256="0j2zr4cddad7z1lxx9m9kfgyy7jajjnblpk9j8igd39ia3ixrpzc"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Athaliana_BioMart_plantsmart25 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart25"; version="3.1.3"; sha256="0a6v0l6p13zmiysi3k8dxzdlxng552qqj9rnlbdavdiidla0pvm3"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Athaliana_BioMart_plantsmart28 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart28"; version="3.2.2"; sha256="1yjyvrbx55y024lqg3b2rlf8pngqw5xi3p83j5ipan05wf0aq6ir"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Athaliana_BioMart_plantsmart51 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart51"; version="0.99.0"; sha256="17vbgpxzr7xkd4dnggj89hbnziczgdgk01gvmysl0cw68zsalsi6"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Btaurus_UCSC_bosTau8_refGene = derive2 { name="TxDb.Btaurus.UCSC.bosTau8.refGene"; version="3.12.0"; sha256="1k06p4jk3lw8xkn31yjwmwk96rkrl6wqq3rmc8bxlbrdi99lh09c"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Btaurus_UCSC_bosTau9_refGene = derive2 { name="TxDb.Btaurus.UCSC.bosTau9.refGene"; version="3.10.0"; sha256="1v7q9jaaj1n2vabjj6ij6pz0g89nqlyy4y4g65irz6cm5mvik4q9"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Celegans_UCSC_ce11_ensGene = derive2 { name="TxDb.Celegans.UCSC.ce11.ensGene"; version="3.12.0"; sha256="0vkra4f05s8nd3xvma1dw6zk5mn7yvnxykx1cs9zad041i1447m3"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Celegans_UCSC_ce11_refGene = derive2 { name="TxDb.Celegans.UCSC.ce11.refGene"; version="3.4.6"; sha256="1aq4jhn2c67wibq02l8drrjscmicbj6z35d0jksq8mwhz8k30zn6"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Celegans_UCSC_ce6_ensGene = derive2 { name="TxDb.Celegans.UCSC.ce6.ensGene"; version="3.2.2"; sha256="1sgppva33cdy4isj2is8mfalj5gmmkpbkq9w1d83a4agcq31mi90"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Cfamiliaris_UCSC_canFam3_refGene = derive2 { name="TxDb.Cfamiliaris.UCSC.canFam3.refGene"; version="3.11.0"; sha256="0rigyddnqxb3dfrj93198j0l8s1flp051xbkmz0b55qp1cyrl5kr"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Cfamiliaris_UCSC_canFam4_refGene = derive2 { name="TxDb.Cfamiliaris.UCSC.canFam4.refGene"; version="3.14.0"; sha256="1xw3kkn2kbrv0yni95sm4sbrxzsg5y21si1plpfcdij78ndhia7d"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Cfamiliaris_UCSC_canFam5_refGene = derive2 { name="TxDb.Cfamiliaris.UCSC.canFam5.refGene"; version="3.14.0"; sha256="1ikadiq14rn8f5ayas0ndkwpafzhpbmawgczyq2hcrl4jpky8vdj"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Dmelanogaster_UCSC_dm3_ensGene = derive2 { name="TxDb.Dmelanogaster.UCSC.dm3.ensGene"; version="3.2.2"; sha256="1337x23rdmiiza83ms225kri37h16q5hw1lw0m577abcgip3d7c7"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Dmelanogaster_UCSC_dm6_ensGene = derive2 { name="TxDb.Dmelanogaster.UCSC.dm6.ensGene"; version="3.12.0"; sha256="0yij7zyqkmmr13389rs2gfa5anvvw648nnl1kjbsgvyxkggif8q4"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Drerio_UCSC_danRer10_refGene = derive2 { name="TxDb.Drerio.UCSC.danRer10.refGene"; version="3.4.6"; sha256="1isd4idvh9flvirrq760cw5lc1nwqjx0q76p9dp01wbbbsb3rfnk"; depends=[AnnotationDbi GenomicFeatures]; }; @@ -319,9 +238,9 @@ in with self; { TxDb_Hsapiens_UCSC_hg18_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg18.knownGene"; version="3.2.2"; sha256="1yk9ggclkqqfzrdp8gcqyplvif824pa7df54ck5gb1xb9q5s975w"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Hsapiens_UCSC_hg19_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg19.knownGene"; version="3.2.2"; sha256="1sajhcqqwazgz2lqbik7rd935i7kpnh08zxbp2ra10j72yqy4g86"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Hsapiens_UCSC_hg19_lincRNAsTranscripts = derive2 { name="TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts"; version="3.2.2"; sha256="0bmbp7kydvviczw8axgxq2wdlwq6fdas90jk9bg56avjq5syws2g"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Hsapiens_UCSC_hg38_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg38.knownGene"; version="3.13.0"; sha256="1r1hfd1z2rqnhs2s39clnfznlncij503dkpadmdiz3qsfv4x7glc"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Hsapiens_UCSC_hg38_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg38.knownGene"; version="3.14.0"; sha256="1akz7rwchalnv8pd1x9y21zaj82kp82nbvm5ghhdl7z49d7spg6c"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Hsapiens_UCSC_hg38_refGene = derive2 { name="TxDb.Hsapiens.UCSC.hg38.refGene"; version="3.13.0"; sha256="07b1bxg17kql6kivwz2gwwjfk9b052q610jciw7c2g4lr425x7ja"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Mmulatta_UCSC_rheMac10_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac10.refGene"; version="3.10.0"; sha256="1d1gvs6877649zwgja1z5x0mgci2kirbj7pzhb22xyinif3bhz26"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Mmulatta_UCSC_rheMac10_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac10.refGene"; version="3.14.0"; sha256="12gxs6s57l22013g40b7hb09vxhmdri73cp9rgs2icb88p7sjlib"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Mmulatta_UCSC_rheMac3_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac3.refGene"; version="3.12.0"; sha256="1a0wbh4dajpgynmw2iwbvp836nklzlk0cfhqnwmqq9l4gzzh2w07"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Mmulatta_UCSC_rheMac8_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac8.refGene"; version="3.12.0"; sha256="1k7mq3p96wfd0694zw00hs4529zvv8nnfdwlsb94bn11qjhr1zrz"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Mmusculus_UCSC_mm10_ensGene = derive2 { name="TxDb.Mmusculus.UCSC.mm10.ensGene"; version="3.4.0"; sha256="0saxi1fdiwd38sfvy1rynd3v44rbp158jv6sjqcivvaqnd84zg9s"; depends=[AnnotationDbi GenomicFeatures]; }; @@ -336,6 +255,7 @@ in with self; { TxDb_Rnorvegicus_UCSC_rn5_refGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn5.refGene"; version="3.12.0"; sha256="08kf9kmdvifcbz0lc8paqp10x272b0f1jh6bj241ii455xsby2zi"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Rnorvegicus_UCSC_rn6_ncbiRefSeq = derive2 { name="TxDb.Rnorvegicus.UCSC.rn6.ncbiRefSeq"; version="3.12.0"; sha256="1gb8l88z1xiyc1r8hvv4kdahd0py2dr5k0zizsrfh013p6q7z5yw"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Rnorvegicus_UCSC_rn6_refGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn6.refGene"; version="3.4.6"; sha256="1piqli0wdq3r289is8lmijnshm8rmx7rphp2qfymlvc0jmvgs9wr"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Rnorvegicus_UCSC_rn7_refGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn7.refGene"; version="3.14.0"; sha256="1h8427klifyv083c02p1r5ic16dr5q2b8r3nfgymrpx3nv6wy0hv"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Scerevisiae_UCSC_sacCer2_sgdGene = derive2 { name="TxDb.Scerevisiae.UCSC.sacCer2.sgdGene"; version="3.2.2"; sha256="0l5gcwhbvzx60p9hjhd31angamb0hkgdg2avga7341j77rd5pwza"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Scerevisiae_UCSC_sacCer3_sgdGene = derive2 { name="TxDb.Scerevisiae.UCSC.sacCer3.sgdGene"; version="3.2.2"; sha256="1sjwl7fb3l3zxxbk8gkvzxwdsind0xjj7kmh7dachm6fi17hpb3d"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Sscrofa_UCSC_susScr11_refGene = derive2 { name="TxDb.Sscrofa.UCSC.susScr11.refGene"; version="3.12.0"; sha256="1i3w8avi5ihkynapya1wy70i6f0nq4jyy5nvlwikppqpdjwn7gb4"; depends=[AnnotationDbi GenomicFeatures]; }; @@ -347,24 +267,24 @@ in with self; { ag_db = derive2 { name="ag.db"; version="3.13.0"; sha256="005y4whqjc8ndr1yjikzcz9196hvq3d04lz8pqfmhk6kyjljpgzh"; depends=[AnnotationDbi org_At_tair_db]; }; agcdf = derive2 { name="agcdf"; version="2.18.0"; sha256="07hq41dwqs7yy2sck8p7zl3v9x4bgl35kkycpazz5ql2g5zy6b7j"; depends=[AnnotationDbi]; }; agprobe = derive2 { name="agprobe"; version="2.18.0"; sha256="1vnawamcpz16na8nmlq2czfxcr325fwdnngxl65mmnbd0f4lmy3k"; depends=[AnnotationDbi]; }; - alternativeSplicingEvents_hg19 = derive2 { name="alternativeSplicingEvents.hg19"; version="1.0.1"; sha256="1v714abdpzhwa450zr66s1yjpxl6lkwi3wjbwn8phn87cgf8rj7q"; depends=[AnnotationHub]; }; - alternativeSplicingEvents_hg38 = derive2 { name="alternativeSplicingEvents.hg38"; version="1.0.1"; sha256="0im87mrh1n6kv84q6lm4y15lb93rih88zdpa0jms5az91lyvsf25"; depends=[AnnotationHub]; }; - anopheles_db0 = derive2 { name="anopheles.db0"; version="3.13.0"; sha256="16agn9hzkgmv5nvmc9v240kzwxyk4s6xlqywns5w4z9agwffpxzn"; depends=[AnnotationDbi]; }; - arabidopsis_db0 = derive2 { name="arabidopsis.db0"; version="3.13.0"; sha256="1mamn9mfh43m0bym7yfi1k7v08j6qdy3b34x1rs0k3kcsapwsmsq"; depends=[AnnotationDbi]; }; + alternativeSplicingEvents_hg19 = derive2 { name="alternativeSplicingEvents.hg19"; version="1.1.0"; sha256="0q90nw3ds66zbyn3ch19lq1qimd1hz1s3jyyd6zi3v10p5s8bm0y"; depends=[AnnotationHub]; }; + alternativeSplicingEvents_hg38 = derive2 { name="alternativeSplicingEvents.hg38"; version="1.1.0"; sha256="18qabggvs9mcg8fwd6prdca8lfxn9r9i0493l667n8jl9vy2pbfc"; depends=[AnnotationHub]; }; + anopheles_db0 = derive2 { name="anopheles.db0"; version="3.14.0"; sha256="10zgx5gkn1pz39yxszn24bp7r4rqlqqhk08v9a364w30vjxxs5j7"; depends=[AnnotationDbi]; }; + arabidopsis_db0 = derive2 { name="arabidopsis.db0"; version="3.14.0"; sha256="0ai9l79m8mdp8w00bfvrzryxy50dvdv203n8202ap2wgxc8z7krp"; depends=[AnnotationDbi]; }; ath1121501_db = derive2 { name="ath1121501.db"; version="3.13.0"; sha256="0v4vapbns71dpv09857lyrnliq202i8yi4ar9z81wbpbc22lhf0d"; depends=[AnnotationDbi org_At_tair_db]; }; ath1121501cdf = derive2 { name="ath1121501cdf"; version="2.18.0"; sha256="1naq8f8dwgbmndx178nm2pw6hjx5ljx0w1wb4dfjifnl4bs5rqcc"; depends=[AnnotationDbi]; }; ath1121501probe = derive2 { name="ath1121501probe"; version="2.18.0"; sha256="0a2nd8zhp3ybis780l3rrmwcxskbl3a111g8w6m8qfwsw5vnlqg1"; depends=[AnnotationDbi]; }; barley1cdf = derive2 { name="barley1cdf"; version="2.18.0"; sha256="0rbij5cqr2sz33y5waybv85nrcgf70iwj5gk13g0xn9p1l1zxyn2"; depends=[AnnotationDbi]; }; barley1probe = derive2 { name="barley1probe"; version="2.18.0"; sha256="1kh5r748b4vkmvlfaclmrh07ypbrzgxn90liqfz1rwkabh6rfk71"; depends=[AnnotationDbi]; }; bovine_db = derive2 { name="bovine.db"; version="3.13.0"; sha256="06692b1n0lzhg0biixipsnwx33w9y8wkc7pc5q1lkjfzbmd2inml"; depends=[AnnotationDbi org_Bt_eg_db]; }; - bovine_db0 = derive2 { name="bovine.db0"; version="3.13.0"; sha256="0axvi95sldkyb9hcfs76wwba61p4yljmqwd87773xlrydrxci511"; depends=[AnnotationDbi]; }; + bovine_db0 = derive2 { name="bovine.db0"; version="3.14.0"; sha256="18cdnn7igix9j5z66cjvj0nrmj8j4ngi6ml9y2byj9pk0ln17izs"; depends=[AnnotationDbi]; }; bovinecdf = derive2 { name="bovinecdf"; version="2.18.0"; sha256="13mf0yy0dypkm5n2ghl04xm6ayb9bn9qijqhgynksghi7s2k34mb"; depends=[AnnotationDbi]; }; bovineprobe = derive2 { name="bovineprobe"; version="2.18.0"; sha256="0i4afa5dksnir2nfrfh2cynjm59sm6vfaqa9wyag8cxg7c2nlm1i"; depends=[AnnotationDbi]; }; bsubtiliscdf = derive2 { name="bsubtiliscdf"; version="2.18.0"; sha256="1rihrjim37b49rhqr4nxga8sp67qri9xqlqc141mhbngh6cw3iyl"; depends=[AnnotationDbi]; }; bsubtilisprobe = derive2 { name="bsubtilisprobe"; version="2.18.0"; sha256="0k99hvgaswn96x4yanvr9cy8bdy69sd5q7yp6dj9synxj7s1fcw9"; depends=[AnnotationDbi]; }; cMAP = derive2 { name="cMAP"; version="1.15.1"; sha256="0pzizm27rgcaic7wsh52z30v1jwarmz4cwh1mksbygp63k54mwiv"; depends=[]; }; canine_db = derive2 { name="canine.db"; version="3.13.0"; sha256="1x1mlh0p6r2l5kclarqwgiw9y64xc8jhp6252hhpl9bpnn638n3s"; depends=[AnnotationDbi org_Cf_eg_db]; }; - canine_db0 = derive2 { name="canine.db0"; version="3.13.0"; sha256="0jyj31g9m5sl8hpjsq82lg9zqk4jf5xjcmnws5r0gvzvn20in69j"; depends=[AnnotationDbi]; }; + canine_db0 = derive2 { name="canine.db0"; version="3.14.0"; sha256="111m5h4zc5cg10rwia1w9rnqbwd2wdr1cg5b4imw9cy5xgnr0h4g"; depends=[AnnotationDbi]; }; canine2_db = derive2 { name="canine2.db"; version="3.13.0"; sha256="1xzz0vivdypwl6kaq2ba02jkpxw0r9r98297ilksdh8m71f244si"; depends=[AnnotationDbi org_Cf_eg_db]; }; canine2cdf = derive2 { name="canine2cdf"; version="2.18.0"; sha256="077cmmnhjdk0vxjzm1kqf3q5kgx6chwkm59dr4s5dy019rqb6sqr"; depends=[AnnotationDbi]; }; canine2probe = derive2 { name="canine2probe"; version="2.18.0"; sha256="1l849a1dqy4kpcsxs0lvb48ag81i0f0ys0w4757rw4kp8ry59z4b"; depends=[AnnotationDbi]; }; @@ -374,10 +294,11 @@ in with self; { celeganscdf = derive2 { name="celeganscdf"; version="2.18.0"; sha256="0a6w0a48azg0i21j3aqb7fnxck3ff9w3gsi89bnlfh0zx6pknx7p"; depends=[AnnotationDbi]; }; celegansprobe = derive2 { name="celegansprobe"; version="2.18.0"; sha256="05k7si3f8pzkyb8jv0r2vkavbrqxsn4nawl92gcphfsylrwcddqb"; depends=[AnnotationDbi]; }; chicken_db = derive2 { name="chicken.db"; version="3.13.0"; sha256="0szb7sgassw10kzm8iz8h3fdbxm6v0kz95yb3a9icj2chi5d1m2i"; depends=[AnnotationDbi org_Gg_eg_db]; }; - chicken_db0 = derive2 { name="chicken.db0"; version="3.13.0"; sha256="1zz5vqmdy33fykqvkdf3plc0vnkk429bah82qv9fnyw3sabpi914"; depends=[AnnotationDbi]; }; + chicken_db0 = derive2 { name="chicken.db0"; version="3.14.0"; sha256="1409v0yd3zzpfg3a11nyyb7nyp1apcj2pjwwp9c5i3c6aa24zbww"; depends=[AnnotationDbi]; }; chickencdf = derive2 { name="chickencdf"; version="2.18.0"; sha256="09hhim5s9xj7n2b5rhn1svf5qly2mn0rr2v2ls25hfzyrqcbxlz1"; depends=[AnnotationDbi]; }; chickenprobe = derive2 { name="chickenprobe"; version="2.18.0"; sha256="1fdsiwfyg7fwslrr7xs3gny7sw24bzg5k1fvlyzb1477sgj0pid3"; depends=[AnnotationDbi]; }; - chimp_db0 = derive2 { name="chimp.db0"; version="3.13.0"; sha256="0ix8278z46gf6n7hbp9v80zv4r1lvisfag1mi0fxlr2ss3j7d79w"; depends=[AnnotationDbi]; }; + chimp_db0 = derive2 { name="chimp.db0"; version="3.14.0"; sha256="02whgyab4fr2b9rnwhld2gyrqz8alfdn3mbx8v21klwvkcslvwav"; depends=[AnnotationDbi]; }; + chromhmmData = derive2 { name="chromhmmData"; version="0.99.2"; sha256="13g6x7lzmkz9qv7yr6ps8gsgilgr048lc7y0y7xsfa9ws3n08fzj"; depends=[]; }; citruscdf = derive2 { name="citruscdf"; version="2.18.0"; sha256="1326mj1xf3k4v5iyyn46whx24qfng0x3cv6rvckdr1ycc1v887dn"; depends=[AnnotationDbi]; }; citrusprobe = derive2 { name="citrusprobe"; version="2.18.0"; sha256="0bf1wic136cxwgs4j13wsyqasnyvr0jw1hzg6qizndmy7g8hrb87"; depends=[AnnotationDbi]; }; clariomdhumanprobeset_db = derive2 { name="clariomdhumanprobeset.db"; version="8.8.0"; sha256="197s389bdzzqyvfrkrn6zqkm2d5s6rnays9hmsdrilxrm9gw32ag"; depends=[AnnotationDbi org_Hs_eg_db]; }; @@ -400,15 +321,16 @@ in with self; { ecoli2_db = derive2 { name="ecoli2.db"; version="3.13.0"; sha256="1i2arr26hch7lmx2bixzy4l0zaa0gynah4dfwa98cvb24ahqqj9f"; depends=[AnnotationDbi org_EcK12_eg_db]; }; ecoli2cdf = derive2 { name="ecoli2cdf"; version="2.18.0"; sha256="1rkxrwadq9kg9685z9pg6rgc4bblkx5p3c6snsl4gv2k188dva9r"; depends=[AnnotationDbi]; }; ecoli2probe = derive2 { name="ecoli2probe"; version="2.18.0"; sha256="11q4ka0ncjapahic49xdl9919vm9frrwlqgj101krgkg262lfm8n"; depends=[AnnotationDbi]; }; - ecoliK12_db0 = derive2 { name="ecoliK12.db0"; version="3.13.0"; sha256="1xpla7q075b8gfbsp6ca8bk8qxib7wjz2w3lyhda08qaf5qnpywa"; depends=[AnnotationDbi]; }; - ecoliSakai_db0 = derive2 { name="ecoliSakai.db0"; version="3.13.0"; sha256="0wihjsbax9q5wc1jnxs8s4amxq5bvlghkwjx5vm8hi6zmjl6yhqv"; depends=[AnnotationDbi]; }; + ecoliK12_db0 = derive2 { name="ecoliK12.db0"; version="3.14.0"; sha256="0j7xshxhn2ysk5mg32hjxbc736g3zn15314p1mxwwwy579hrcbbn"; depends=[AnnotationDbi]; }; + ecoliSakai_db0 = derive2 { name="ecoliSakai.db0"; version="3.14.0"; sha256="13a4gnz2viia9v1hryvqs8nvm9gxz43lpwq872rjvcs07bazsjd5"; depends=[AnnotationDbi]; }; ecoliasv2cdf = derive2 { name="ecoliasv2cdf"; version="2.18.0"; sha256="16i6has9qgmzakcy24racc1h9j331wndv5c87qp5r1zrai61zyav"; depends=[AnnotationDbi]; }; ecoliasv2probe = derive2 { name="ecoliasv2probe"; version="2.18.0"; sha256="1hfrnal170cdigc2fmnynb75jjsiq77p4x6ws9gah558hvx87nk3"; depends=[AnnotationDbi]; }; ecolicdf = derive2 { name="ecolicdf"; version="2.18.0"; sha256="18g5prjykn356k35m131ifn128k5mhij2x26balqav0azigzjqsn"; depends=[AnnotationDbi]; }; ecoliprobe = derive2 { name="ecoliprobe"; version="2.18.0"; sha256="17g5zxfzsak7a0w51irc0w1w2i5ngdkx9db6rhv1fyp8mfjgaphd"; depends=[AnnotationDbi]; }; + excluderanges = derive2 { name="excluderanges"; version="0.99.6"; sha256="1ryp2ghbx1b1268fpgza5rn6brhalff9hsr6fxpr5x5mc35hkd68"; depends=[]; }; fitCons_UCSC_hg19 = derive2 { name="fitCons.UCSC.hg19"; version="3.7.1"; sha256="19isa4x8js0pdb4k8a11bw3bzmzv6jc4jphzrvav7piqkvrgykzx"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; - fly_db0 = derive2 { name="fly.db0"; version="3.13.0"; sha256="1ck3bfajzagk4k2nk6481i3lzin1m3y1pcwxjsq7g0v3k4mj2rpd"; depends=[AnnotationDbi]; }; - geneplast_data = derive2 { name="geneplast.data"; version="0.99.2"; sha256="17smdm98djj9n7h6w7wy5k5q466zn9kqvs47qvf8kdmahghrdhii"; depends=[]; }; + fly_db0 = derive2 { name="fly.db0"; version="3.14.0"; sha256="0jk5k5zpr4r9yn2l7vpb01xdmhi0pm3jg333jr7rv0c6fzjq5279"; depends=[AnnotationDbi]; }; + geneplast_data = derive2 { name="geneplast.data"; version="0.99.4"; sha256="070g5a1xh1m3yar6dk3p1m86hpw8ll4xjir2n6sh2rfjw5kijmld"; depends=[]; }; geneplast_data_string_v91 = derive2 { name="geneplast.data.string.v91"; version="0.99.6"; sha256="0mc26d0sgmpmfmqsqinqv5k6vhg0hlc8hsjkcnvf369yav224nq1"; depends=[]; }; genomewidesnp5Crlmm = derive2 { name="genomewidesnp5Crlmm"; version="1.0.6"; sha256="06dmwnjy3gb53y6nr02dmp22qzfl5d63wppazrabcqbzwimhnvp8"; depends=[]; }; genomewidesnp6Crlmm = derive2 { name="genomewidesnp6Crlmm"; version="1.0.7"; sha256="16qcxa32fmbdcv5dck0grsnqyfcqql7wpxa1l6andv9hrvabv2jx"; depends=[]; }; @@ -476,7 +398,7 @@ in with self; { hguqiagenv3_db = derive2 { name="hguqiagenv3.db"; version="3.2.3"; sha256="1ylji60m2zb8ialbl5wdrxy425sriq17z3bg8ikvc5b5gjsw6l7w"; depends=[AnnotationDbi org_Hs_eg_db]; }; hi16cod_db = derive2 { name="hi16cod.db"; version="3.4.0"; sha256="0ydi0jljx8igzrqaspr9yywv43h2zimm9fk7xc55nm6mnp5jl7kl"; depends=[AnnotationDbi org_Hs_eg_db]; }; hivprtplus2cdf = derive2 { name="hivprtplus2cdf"; version="2.18.0"; sha256="1jv4qzajikz7x4vq87wzn7hf6hx9r4c2gkjhfp93kqzwzddmigf4"; depends=[AnnotationDbi]; }; - hpAnnot = derive2 { name="hpAnnot"; version="1.0.1"; sha256="16isg9byqc9ghipg7626mrijcs0bngz6n6hxz3m616v21cjyingj"; depends=[]; }; + hpAnnot = derive2 { name="hpAnnot"; version="1.1.0"; sha256="1rnvmwyjq6vd6bh8a8y8gsw07kd4184h1a02i6aapp0szfghq9bp"; depends=[]; }; hs25kresogen_db = derive2 { name="hs25kresogen.db"; version="2.5.0"; sha256="1yp25ifm3bwzkzm8vimlxw5slini7drhvmh5ggh0z80sfrjyndyf"; depends=[AnnotationDbi org_Hs_eg_db]; }; hspeccdf = derive2 { name="hspeccdf"; version="0.99.1"; sha256="07azl9zpg552ic7li14p6n09ba3jbqqclwffjfpd2vc249x0n4fw"; depends=[AnnotationDbi]; }; hta20probeset_db = derive2 { name="hta20probeset.db"; version="8.8.0"; sha256="00pqpqkjmkma9blbzhbmj98h18g46h75q2r2d2li7jhgns7b0pc3"; depends=[AnnotationDbi org_Hs_eg_db]; }; @@ -541,7 +463,7 @@ in with self; { hugene20sttranscriptcluster_db = derive2 { name="hugene20sttranscriptcluster.db"; version="8.8.0"; sha256="00fjhz7gac0rssn3kplag68vfx7gimjrm4mc7z516bs013rppgsz"; depends=[AnnotationDbi org_Hs_eg_db]; }; hugene21stprobeset_db = derive2 { name="hugene21stprobeset.db"; version="8.8.0"; sha256="0s4zl9lv5w3fkb9axhz9siliz73brwarw8a7cam1p9b2kmdrdqs0"; depends=[AnnotationDbi org_Hs_eg_db]; }; hugene21sttranscriptcluster_db = derive2 { name="hugene21sttranscriptcluster.db"; version="8.8.0"; sha256="1g7yfva96vhkdvcvsjwsj7sy8q6kczd5rmcwrwjc73v9qi4ywgal"; depends=[AnnotationDbi org_Hs_eg_db]; }; - human_db0 = derive2 { name="human.db0"; version="3.13.0"; sha256="1zibqmiy0irw10lr4jlfs5yxsrkngzbp1q9jqd3n5xrzn4p3lxxz"; depends=[AnnotationDbi]; }; + human_db0 = derive2 { name="human.db0"; version="3.14.0"; sha256="1yinl32xaijp7b53z2dln8d60alafarkcxsiz55avxy3birnf1cq"; depends=[AnnotationDbi]; }; human1mduov3bCrlmm = derive2 { name="human1mduov3bCrlmm"; version="1.0.4"; sha256="1p7qpzk6svafgdafljhh4k0z7pcs78qmwwfd80r0a1yhkssmp0v9"; depends=[]; }; human1mv1cCrlmm = derive2 { name="human1mv1cCrlmm"; version="1.0.3"; sha256="1qlph3qrjv52ddzlj8pwa93zzh70x4mbdrdr7q9pan427lpck9gx"; depends=[]; }; human370quadv3cCrlmm = derive2 { name="human370quadv3cCrlmm"; version="1.0.3"; sha256="1chjx9vsmqz2whslw1l7jn7nfn7zx6pcjfmqqm9mh81i74rzrdik"; depends=[]; }; @@ -579,7 +501,7 @@ in with self; { m20kcod_db = derive2 { name="m20kcod.db"; version="3.4.0"; sha256="1p2sm5j4b50iqzwcb984qrh74c3hf6yml7b8mvxlhhhvxz4iy1np"; depends=[AnnotationDbi org_Mm_eg_db]; }; maizecdf = derive2 { name="maizecdf"; version="2.18.0"; sha256="0yfz5gjhsq4wz6j63s1b1hxjz03gsmrlfs2cdc8smq6azp3zdid4"; depends=[AnnotationDbi]; }; maizeprobe = derive2 { name="maizeprobe"; version="2.18.0"; sha256="01h5dv5i0zaqlphkii9ipxy9wswv1srgprrpr5vmi01c9d98qsk0"; depends=[AnnotationDbi]; }; - malaria_db0 = derive2 { name="malaria.db0"; version="3.13.0"; sha256="0g4accix6yw1naf8sabqdp07yjmql0rqnjljw56kgq279hbc2vkp"; depends=[AnnotationDbi]; }; + malaria_db0 = derive2 { name="malaria.db0"; version="3.14.0"; sha256="0c9i4kh7hpahrkc3l7cpg9x64fcwlkxsxa1ism774y0mifki0qy6"; depends=[AnnotationDbi]; }; medicagocdf = derive2 { name="medicagocdf"; version="2.18.0"; sha256="1clz679cc887x98c6jk93cphijkbg5r2nd9idrj5901yvh6p9n5q"; depends=[AnnotationDbi]; }; medicagoprobe = derive2 { name="medicagoprobe"; version="2.18.0"; sha256="0w6j1pfkvb3npc8srpjifq2ywnqxhc9q090jqzmkx22x36cw9cl5"; depends=[AnnotationDbi]; }; metaboliteIDmapping = derive2 { name="metaboliteIDmapping"; version="1.0.0"; sha256="0nflpvla3wn8i2gaja5wwjkxk0jich95f5ws3rnhh2a6rx3xi3ql"; depends=[AnnotationHub]; }; @@ -634,7 +556,7 @@ in with self; { mogene20sttranscriptcluster_db = derive2 { name="mogene20sttranscriptcluster.db"; version="8.8.0"; sha256="1bpzpba9aifc7w6qbrh6rnc636k6z1r9gz03sxvc3aa3977p9xag"; depends=[AnnotationDbi org_Mm_eg_db]; }; mogene21stprobeset_db = derive2 { name="mogene21stprobeset.db"; version="8.8.0"; sha256="172bhzqqw5hz76bw8vqwx2qpw4f6rwbcm6savmkxmmhzb2nq60z5"; depends=[AnnotationDbi org_Mm_eg_db]; }; mogene21sttranscriptcluster_db = derive2 { name="mogene21sttranscriptcluster.db"; version="8.8.0"; sha256="02g2n5nkxi9lqw9h7sbkblk99zd57lkrldqb1fmi9zww59qwagrv"; depends=[AnnotationDbi org_Mm_eg_db]; }; - mouse_db0 = derive2 { name="mouse.db0"; version="3.13.0"; sha256="0k6a7mq2dxi8r6rxafdr1nxjlmiisfhi3g1qp7zv9isjiqpgjrld"; depends=[AnnotationDbi]; }; + mouse_db0 = derive2 { name="mouse.db0"; version="3.14.0"; sha256="1s0v0jndm29jdb7il853i9kx3mqnqviqwd2v1159l0y4fqpv6g1y"; depends=[AnnotationDbi]; }; mouse4302_db = derive2 { name="mouse4302.db"; version="3.13.0"; sha256="0rf22kfj6y96ap0gcwq3mnpv6fj0yax37gf51sfi0wkmp95k7rcs"; depends=[AnnotationDbi org_Mm_eg_db]; }; mouse4302cdf = derive2 { name="mouse4302cdf"; version="2.18.0"; sha256="1mpyma4x8zfs2fmmx57xw4cfs2cf9lhw71nc3icl72d7vmwidswc"; depends=[AnnotationDbi]; }; mouse4302frmavecs = derive2 { name="mouse4302frmavecs"; version="1.5.0"; sha256="04clwkfz1gqqwrnqbavkka3hv480w6vi6c4q947qqnhw8j5jjp7s"; depends=[]; }; @@ -671,26 +593,27 @@ in with self; { nugomm1a520177cdf = derive2 { name="nugomm1a520177cdf"; version="3.4.0"; sha256="0skd5b76si0vydzk5qhg4f1a1j655alxflm9sqci8fi8safwj96a"; depends=[AnnotationDbi]; }; nugomm1a520177probe = derive2 { name="nugomm1a520177probe"; version="3.4.0"; sha256="1n70k0mhv146983myjgk1cgkr9rmmcpqdv8wpkcr320qcvgf9bn7"; depends=[AnnotationDbi]; }; oligoData = derive2 { name="oligoData"; version="1.8.0"; sha256="1d1yfms3jv2c4s255xnh8yxwijrj35skw3nxds7l46y88lg3qn8y"; depends=[oligo]; }; - org_Ag_eg_db = derive2 { name="org.Ag.eg.db"; version="3.13.0"; sha256="08s5sf4gxf3dc0j7zjjmjvz87yh0z9a438mbdgki9q8snbi72mp8"; depends=[AnnotationDbi]; }; - org_At_tair_db = derive2 { name="org.At.tair.db"; version="3.13.0"; sha256="0r0izn5cf0mikbzls37j1wavznpm23mhb316ph468hf8z76l4blm"; depends=[AnnotationDbi]; }; - org_Bt_eg_db = derive2 { name="org.Bt.eg.db"; version="3.13.0"; sha256="0pwvwyfah8fhvaxdc8zkp3lp1v4mchhzr84r3hb0jx97icdvhafi"; depends=[AnnotationDbi]; }; - org_Ce_eg_db = derive2 { name="org.Ce.eg.db"; version="3.13.0"; sha256="1m8dd1jqf6a6rnxs3hyd88njc96j7dhxf7zbrp8sfq3k2vpjssp5"; depends=[AnnotationDbi]; }; - org_Cf_eg_db = derive2 { name="org.Cf.eg.db"; version="3.13.0"; sha256="1bzxl0frgjkprbcc65lzdivjpq0kygxyyxxafmf381lrib9x5hgz"; depends=[AnnotationDbi]; }; - org_Dm_eg_db = derive2 { name="org.Dm.eg.db"; version="3.13.0"; sha256="1vzzgqjry4390x0mvcpxaawbngdbixbmyf6jrncibqmk43hvnxbi"; depends=[AnnotationDbi]; }; - org_Dr_eg_db = derive2 { name="org.Dr.eg.db"; version="3.13.0"; sha256="0swhmwscnw1g0g5ilrgwqjyy01lis97i52scyb40d9nzjq5dp38p"; depends=[AnnotationDbi]; }; - org_EcK12_eg_db = derive2 { name="org.EcK12.eg.db"; version="3.13.0"; sha256="1wfshrqq0n0avplgzq3gzamzfxsf7s0cccdcmnx14ygp1mfqmpfs"; depends=[AnnotationDbi]; }; - org_EcSakai_eg_db = derive2 { name="org.EcSakai.eg.db"; version="3.13.0"; sha256="0ddi8m766cfvmchv5g4mbsbnvdb8g65mh7xy0q48r7q5ifx076v1"; depends=[AnnotationDbi]; }; - org_Gg_eg_db = derive2 { name="org.Gg.eg.db"; version="3.13.0"; sha256="0nggkh2w1ms97ss193khbdyrv1lljfpwikadgcch4c3jhpcikhvl"; depends=[AnnotationDbi]; }; - org_Hs_eg_db = derive2 { name="org.Hs.eg.db"; version="3.13.0"; sha256="0bwn29i2w6mqhk9qyig8vfl372psy50b1sz8n6ddy0hzmnr1s6ym"; depends=[AnnotationDbi]; }; - org_Mm_eg_db = derive2 { name="org.Mm.eg.db"; version="3.13.0"; sha256="1jzz36pdq8xlj1mr4h4jw0mvd8gp30wzqz1jjbmp848gvy4xzz4l"; depends=[AnnotationDbi]; }; - org_Mmu_eg_db = derive2 { name="org.Mmu.eg.db"; version="3.13.0"; sha256="0f638jwj2b89lplm0m50zldh1rp7hpypcjq73lcrwff89l6g1vyb"; depends=[AnnotationDbi]; }; + ontoProcData = derive2 { name="ontoProcData"; version="0.99.9"; sha256="1axqhximb238h7ib7sd7g1n1in8969d263pjd362i0s1m4y5y033"; depends=[]; }; + org_Ag_eg_db = derive2 { name="org.Ag.eg.db"; version="3.14.0"; sha256="1biz3c5zjc0vja77yrflkaalj7pf0mrjcdxiqvb7cgnyhajgpz41"; depends=[AnnotationDbi]; }; + org_At_tair_db = derive2 { name="org.At.tair.db"; version="3.14.0"; sha256="0yi2zzgqwxfv7yp8n3mmmsnxzzy7q3zgckckbxwmj98gsizc2v9p"; depends=[AnnotationDbi]; }; + org_Bt_eg_db = derive2 { name="org.Bt.eg.db"; version="3.14.0"; sha256="0igswc3ifwzi4vygy957j4936hpj0laalxlhnhgf4adq08g46l6f"; depends=[AnnotationDbi]; }; + org_Ce_eg_db = derive2 { name="org.Ce.eg.db"; version="3.14.0"; sha256="1ji2gnwiprfsxvw0302lzqw4x82q47k0kb9ksxb0gi78x9wjxg1b"; depends=[AnnotationDbi]; }; + org_Cf_eg_db = derive2 { name="org.Cf.eg.db"; version="3.14.0"; sha256="0asq3f3638ar59k3vjlq51wc0kcv5z3z8rx590gx3hpx84c5f8jr"; depends=[AnnotationDbi]; }; + org_Dm_eg_db = derive2 { name="org.Dm.eg.db"; version="3.14.0"; sha256="1r9p3fsygw2v2mawzz7x012ww024qdw7riik78xhf5w0knsjxmdc"; depends=[AnnotationDbi]; }; + org_Dr_eg_db = derive2 { name="org.Dr.eg.db"; version="3.14.0"; sha256="1pa2f748sssbbwfdizrf3brqdsdhp403k6kqs24a68ijm1szz9kj"; depends=[AnnotationDbi]; }; + org_EcK12_eg_db = derive2 { name="org.EcK12.eg.db"; version="3.14.0"; sha256="1f0m8xmvvllv4d2dmbkqaplngmavj9jzzq1chjxjwb1bwn4l4r6v"; depends=[AnnotationDbi]; }; + org_EcSakai_eg_db = derive2 { name="org.EcSakai.eg.db"; version="3.14.0"; sha256="18arc9x4lg8fblgraa6fdzc5gzidqvw1c22rv64c6gv0wdi3ixby"; depends=[AnnotationDbi]; }; + org_Gg_eg_db = derive2 { name="org.Gg.eg.db"; version="3.14.0"; sha256="16pldxp326v2z5nifzisp0hssvysb4vdv6132q85xfclfc8zz517"; depends=[AnnotationDbi]; }; + org_Hs_eg_db = derive2 { name="org.Hs.eg.db"; version="3.14.0"; sha256="0mnddv42ll0sc0zxf7hkgilslykbvfn7xgxg1g8qi57q2dmpwb6j"; depends=[AnnotationDbi]; }; + org_Mm_eg_db = derive2 { name="org.Mm.eg.db"; version="3.14.0"; sha256="0iddj19k34v66jzk8q1khpw9wdcl3qdzdmhmzjhcxwahid22iwjn"; depends=[AnnotationDbi]; }; + org_Mmu_eg_db = derive2 { name="org.Mmu.eg.db"; version="3.14.0"; sha256="046qv6y137nzkj8h8ripq41g60vs11m40hcdk7qd8ihirvwdg8s4"; depends=[AnnotationDbi]; }; org_Mxanthus_db = derive2 { name="org.Mxanthus.db"; version="1.0.27"; sha256="1jqwsdjz1d8fwqhq26lavb2kq739ddlb8khsh4b096vhnwv3dxg5"; depends=[AnnotationDbi AnnotationHub BiocFileCache BiocStyle]; }; - org_Pf_plasmo_db = derive2 { name="org.Pf.plasmo.db"; version="3.13.0"; sha256="0nn5zc2vvzrwz49jvf4x14lc54ch3d9ykchzfz28jnxlmq2bx68v"; depends=[AnnotationDbi]; }; - org_Pt_eg_db = derive2 { name="org.Pt.eg.db"; version="3.13.0"; sha256="0297yvg4l7vxqrmj18vyifsp7zaz7wbcwsbafqqjagm05lj6aylp"; depends=[AnnotationDbi]; }; - org_Rn_eg_db = derive2 { name="org.Rn.eg.db"; version="3.13.0"; sha256="1z8x27885jg8grbbsmwn99ar95iw8i3rxj2byimc1754gvsq50vl"; depends=[AnnotationDbi]; }; - org_Sc_sgd_db = derive2 { name="org.Sc.sgd.db"; version="3.13.0"; sha256="05wd3wawx1gjm7gx1zz1bdib6bdnhy7aafki1x7zi0yihvy1jsa0"; depends=[AnnotationDbi]; }; - org_Ss_eg_db = derive2 { name="org.Ss.eg.db"; version="3.13.0"; sha256="0m4srfldbrcdyl0yrzh7j0m4ni7akbj839j0b26xkflaj2pikr8x"; depends=[AnnotationDbi]; }; - org_Xl_eg_db = derive2 { name="org.Xl.eg.db"; version="3.13.0"; sha256="0ryhzf7sdknvcjkwzlb33vbwlwbip5jhggn2ap1psg2fcfbzqn5k"; depends=[AnnotationDbi]; }; + org_Pf_plasmo_db = derive2 { name="org.Pf.plasmo.db"; version="3.14.0"; sha256="1fs68n9xyia6v9jj8a91asmrirnh2xkqcgrjbzk7x6ss0rlwcl7w"; depends=[AnnotationDbi]; }; + org_Pt_eg_db = derive2 { name="org.Pt.eg.db"; version="3.14.0"; sha256="1xh3hdzb37baml9nvi22hy86js2iigkfwnij3dd368r35qd394xk"; depends=[AnnotationDbi]; }; + org_Rn_eg_db = derive2 { name="org.Rn.eg.db"; version="3.14.0"; sha256="1p4pzd6dl2jwi9n0kkw5cfc8swipgh624aj1znznb5yc9zyf26sr"; depends=[AnnotationDbi]; }; + org_Sc_sgd_db = derive2 { name="org.Sc.sgd.db"; version="3.14.0"; sha256="1cklqalaycalh689jks9nxizr2nd6ljqxvnn15pah48gcc1s727q"; depends=[AnnotationDbi]; }; + org_Ss_eg_db = derive2 { name="org.Ss.eg.db"; version="3.14.0"; sha256="05s3qjvdxxni2s4ikcnbcnm3an5g0ch7yabdixz9z7qd5npj2wq8"; depends=[AnnotationDbi]; }; + org_Xl_eg_db = derive2 { name="org.Xl.eg.db"; version="3.14.0"; sha256="1ysrc12kzhlf5d86bz9dv7prjcwh68mww18dgivfamzqsk0x6wir"; depends=[AnnotationDbi]; }; paeg1acdf = derive2 { name="paeg1acdf"; version="2.18.0"; sha256="127pgxxp5wp3hgmafbzdzsk4gqnllq1m1gcsfyzkvpkvmbn4aa9n"; depends=[AnnotationDbi]; }; paeg1aprobe = derive2 { name="paeg1aprobe"; version="2.18.0"; sha256="0hbyd402wf9nzy2g93nhnf2zsi9jvhgfk0llxlyfk0kqxs0y4byy"; depends=[AnnotationDbi]; }; pd_081229_hg18_promoter_medip_hx1 = derive2 { name="pd.081229.hg18.promoter.medip.hx1"; version="0.99.4"; sha256="1h4925dmw0vfsnhllg55gswq3sxfmx9rcjzifdvgs9y27399psrr"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite]; }; @@ -866,9 +789,9 @@ in with self; { pedbarrayv9_db = derive2 { name="pedbarrayv9.db"; version="3.2.3"; sha256="0x9m9m4nmdhc0j5244avmlfwljcpw0sh44l1b00cx05swi3vmjlp"; depends=[AnnotationDbi org_Hs_eg_db]; }; phastCons100way_UCSC_hg19 = derive2 { name="phastCons100way.UCSC.hg19"; version="3.7.2"; sha256="1jmc4k4zgkx5vr2plnidnd9bidlwlb0kr7mjg60cqjw7dq7jl1fa"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; phastCons100way_UCSC_hg38 = derive2 { name="phastCons100way.UCSC.hg38"; version="3.7.1"; sha256="0dka39rvx4d3wbcjypcgvc19s6cnxkkfywa4irv23kpibq1sjyv0"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; - phastCons30way_UCSC_hg38 = derive2 { name="phastCons30way.UCSC.hg38"; version="3.11.1"; sha256="0g7mn3wa9l9hpks828n82rads1ls5mjgh6dfgk3iw1nrl0ylws4v"; depends=[AnnotationHub GenomicScores]; }; + phastCons30way_UCSC_hg38 = derive2 { name="phastCons30way.UCSC.hg38"; version="3.13.0"; sha256="0jq5z1af0f5jqazz46gvf3nnkrp91a6qzb96bk7fjdbvk5b3z0dd"; depends=[AnnotationHub GenomicScores]; }; phastCons7way_UCSC_hg38 = derive2 { name="phastCons7way.UCSC.hg38"; version="3.7.1"; sha256="105isdrb3nsy30wd8yy9vrrv8b7c8izc11xqqixg6rcriacd0rl0"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; - pig_db0 = derive2 { name="pig.db0"; version="3.13.0"; sha256="1vj6h8nk0kxryjfgi2d5a708pn9q3r9y7dbqw893i0204ak0w0h5"; depends=[AnnotationDbi]; }; + pig_db0 = derive2 { name="pig.db0"; version="3.14.0"; sha256="0m25d7sgzkivzdinfmr07jk51i2zia38g2ppbpvv3akp3sqykz8h"; depends=[AnnotationDbi]; }; plasmodiumanophelescdf = derive2 { name="plasmodiumanophelescdf"; version="2.18.0"; sha256="1vs36091djinn3g6rjhmy9xfdyi58365zbcjc9mf50adnp2i5fq9"; depends=[AnnotationDbi]; }; plasmodiumanophelesprobe = derive2 { name="plasmodiumanophelesprobe"; version="2.18.0"; sha256="03hfq51nrpmx8ihc48jiih6bk99irrgal9x7i7mgcv8xd508gcsy"; depends=[AnnotationDbi]; }; poplarcdf = derive2 { name="poplarcdf"; version="2.18.0"; sha256="0j28czs936j2wgwp63qbwl1mjcflcrx7ir88jzxkkw7411ch1gl1"; depends=[AnnotationDbi]; }; @@ -879,6 +802,7 @@ in with self; { primeviewcdf = derive2 { name="primeviewcdf"; version="2.18.0"; sha256="0qj3l2iabpl2d79pr258cbqar4hdpjkbwf829bnwrmabkaq92z48"; depends=[AnnotationDbi]; }; primeviewprobe = derive2 { name="primeviewprobe"; version="2.18.0"; sha256="0kw04789ihxnw874qcdj5ypwj6npya2v3p893ahjwhys5wrivmqg"; depends=[AnnotationDbi]; }; r10kcod_db = derive2 { name="r10kcod.db"; version="3.4.0"; sha256="073b5fb8dcqp5iq3h6p6250l91z6bzg72nzl7qva3jin33v96nmm"; depends=[AnnotationDbi org_Rn_eg_db]; }; + rGenomeTracksData = derive2 { name="rGenomeTracksData"; version="0.99.0"; sha256="1b9g8409b0b6nrskzhm7zrr61la885b8vkp0v1qf72jclbq762ka"; depends=[AnnotationHub]; }; rae230a_db = derive2 { name="rae230a.db"; version="3.13.0"; sha256="13mfwmx8zc519argmjd0bpgfr29bgbs9r2jln1idc9r51smqr9zy"; depends=[AnnotationDbi org_Rn_eg_db]; }; rae230acdf = derive2 { name="rae230acdf"; version="2.18.0"; sha256="1f62gw18mhmrm4sqc3kazsm5zd4m73f99xzxbakqhvr5sbdqh28k"; depends=[AnnotationDbi]; }; rae230aprobe = derive2 { name="rae230aprobe"; version="2.18.0"; sha256="0gkpaa53znqsmi3366wfmqz6q3d1cq3ymag09gkpdmssrp1rh9qh"; depends=[AnnotationDbi]; }; @@ -897,7 +821,7 @@ in with self; { ragene20sttranscriptcluster_db = derive2 { name="ragene20sttranscriptcluster.db"; version="8.8.0"; sha256="1bi4wy0sbhsyavxwshxvf3iqmyz26q7y2vqp1h3rjshsjdmhfd0h"; depends=[AnnotationDbi org_Rn_eg_db]; }; ragene21stprobeset_db = derive2 { name="ragene21stprobeset.db"; version="8.8.0"; sha256="1m0hd0nlav9dhqzvs5drl8q3llx2wjxdfvb24fmjnba4h769ns7k"; depends=[AnnotationDbi org_Rn_eg_db]; }; ragene21sttranscriptcluster_db = derive2 { name="ragene21sttranscriptcluster.db"; version="8.8.0"; sha256="14hp03pizq7kprwk26s9w6s27zzbs2kk50qhjbiwic1xbrl0dp8a"; depends=[AnnotationDbi org_Rn_eg_db]; }; - rat_db0 = derive2 { name="rat.db0"; version="3.13.0"; sha256="14qmpa103ypqc9bz2aq8lb5nynf4kgdj6qzyf467kc41jj377c60"; depends=[AnnotationDbi]; }; + rat_db0 = derive2 { name="rat.db0"; version="3.14.0"; sha256="0kv02lf2k4xxa25sxjhb8zra8zfgn1jflqcxvq2zkwaj0xdw9883"; depends=[AnnotationDbi]; }; rat2302_db = derive2 { name="rat2302.db"; version="3.13.0"; sha256="1k2qm1rpq3xkj52m3n629r4qcqi2azdssb2i5shj9jdaqkmr43qc"; depends=[AnnotationDbi org_Rn_eg_db]; }; rat2302cdf = derive2 { name="rat2302cdf"; version="2.18.0"; sha256="1748rc6yypd7y8wgr1qg632pcsxx0fkxjz6b3z4fhblgdllhy9wk"; depends=[AnnotationDbi]; }; rat2302frmavecs = derive2 { name="rat2302frmavecs"; version="0.99.11"; sha256="0qy5hf86lrkn20yg6d46kcw9fjc0qhsbzbyavaj1v2zl34xvr1ii"; depends=[affy frma]; }; @@ -905,7 +829,7 @@ in with self; { ratCHRLOC = derive2 { name="ratCHRLOC"; version="2.1.6"; sha256="0mgk6lwvvdwjzjh4r1q1q6nfnx4vqx9iy6gmbrb9f31jf30hqnsb"; depends=[]; }; rattoxfxcdf = derive2 { name="rattoxfxcdf"; version="2.18.0"; sha256="0q84lfaxnnj2zbm5q8xswa1md15fjj4i0djnqr835ixzn7px4yqn"; depends=[AnnotationDbi]; }; rattoxfxprobe = derive2 { name="rattoxfxprobe"; version="2.18.0"; sha256="1kp159553rkcn9yh6x3yph3yjz2ja21wi9j5ax03qnhwlsl1x8ik"; depends=[AnnotationDbi]; }; - reactome_db = derive2 { name="reactome.db"; version="1.76.0"; sha256="1bj4nbaasb5bqdf5f090rqa43g4a9bidjq0mla9b8gm4r3m17xvl"; depends=[AnnotationDbi]; }; + reactome_db = derive2 { name="reactome.db"; version="1.77.0"; sha256="10hlpjdl5qy9fyjffvh2rq8n5pb7iac8bd4jckfw94p07n8khqkq"; depends=[AnnotationDbi]; }; rgu34a_db = derive2 { name="rgu34a.db"; version="3.13.0"; sha256="1nl28gia0zh8xkfv8llxiysxk1k1gm6cs2wvl0n1xqhnr0rhla76"; depends=[AnnotationDbi org_Rn_eg_db]; }; rgu34acdf = derive2 { name="rgu34acdf"; version="2.18.0"; sha256="08z9f16xp1m2mwl9vlmbffxl4zyyl8cgzf6wp66rrm32lvl0nbwq"; depends=[AnnotationDbi]; }; rgu34aprobe = derive2 { name="rgu34aprobe"; version="2.18.0"; sha256="1gjxyq9128jgv3ic386f84rajgf3wz7yi2dja80y0ff4m0a48dlh"; depends=[AnnotationDbi]; }; @@ -919,7 +843,7 @@ in with self; { rgug4105a_db = derive2 { name="rgug4105a.db"; version="3.2.3"; sha256="0lq8k95qm0q7j65nf16p3f09dn9zs87n3k561wxrgi2lb0pf6j40"; depends=[AnnotationDbi org_Rn_eg_db]; }; rgug4130a_db = derive2 { name="rgug4130a.db"; version="3.2.3"; sha256="0zlcn9spw23bj3px9z1l2f5afn09zbr6rv0nbd2h6dd12wrvy1zk"; depends=[AnnotationDbi org_Rn_eg_db]; }; rgug4131a_db = derive2 { name="rgug4131a.db"; version="3.2.3"; sha256="1r272jf9cflf1yf4bznp4d59h7bd7adh1i3rf890h5ffc0xzf5cq"; depends=[AnnotationDbi org_Rn_eg_db]; }; - rhesus_db0 = derive2 { name="rhesus.db0"; version="3.13.0"; sha256="1iaw8r8d83l2qgg4w3iarwy8qvlplz8q5bvgk16cws8md69kn10d"; depends=[AnnotationDbi]; }; + rhesus_db0 = derive2 { name="rhesus.db0"; version="3.14.0"; sha256="1ym8w2jhpx64rv1vk3vgsc1dbzs2f6zw17gvw6j992xg5dq0ly0w"; depends=[AnnotationDbi]; }; rhesuscdf = derive2 { name="rhesuscdf"; version="2.18.0"; sha256="0q2alkxm80wkzaf0q80df27q30qkswybavz05x6ywsihbs9h0nb8"; depends=[AnnotationDbi]; }; rhesusprobe = derive2 { name="rhesusprobe"; version="2.18.0"; sha256="0fd8pvwvpcmx41k80nbccjxllh39fvjf7l9dr8facisl1x7gsfil"; depends=[AnnotationDbi]; }; ri16cod_db = derive2 { name="ri16cod.db"; version="3.4.0"; sha256="1xz533vxjdyxx1wkks0kgk6b90sxs44iqcsvyds0xcm573bx8c6q"; depends=[AnnotationDbi org_Rn_eg_db]; }; @@ -937,11 +861,14 @@ in with self; { rwgcod_db = derive2 { name="rwgcod.db"; version="3.4.0"; sha256="1k0fpnv314lx2jf3mm6xfqa3jx353sp42awxqys9byzhg9zyj2j3"; depends=[AnnotationDbi org_Rn_eg_db]; }; saureuscdf = derive2 { name="saureuscdf"; version="2.18.0"; sha256="0vmm3fy10dzzmaq22ah4fb0k3fs1gdbhnsi8mxz7xgp27dcan29j"; depends=[AnnotationDbi]; }; saureusprobe = derive2 { name="saureusprobe"; version="2.18.0"; sha256="0s5ma3hh7ncsi4dq33r3hwffk85x3gvjbm5cslppbsd0r0bjwkia"; depends=[AnnotationDbi]; }; + scAnnotatR_models = derive2 { name="scAnnotatR.models"; version="0.99.10"; sha256="1mj23jyakx5bss4v8lb66ri67ajcxk9kzfp8ya8vsbhkx5npqgl4"; depends=[]; }; silva128_1MgDb = derive2 { name="silva128.1MgDb"; version="1.00.0"; sha256="0pwwxxa55d3919rbczg5iskd03ignimk80m52kfi930b1kdg9qc2"; depends=[]; }; soybeancdf = derive2 { name="soybeancdf"; version="2.18.0"; sha256="1dlwxdslm827661z6f4z2hwr7wpwqfzvizhvv63p86ll7l6gs3s8"; depends=[AnnotationDbi]; }; soybeanprobe = derive2 { name="soybeanprobe"; version="2.18.0"; sha256="06dpwqad7q3wyq0bsgpwkw8kx1gq5fy1s1lw632xrvgcid2fsmf8"; depends=[AnnotationDbi]; }; sugarcanecdf = derive2 { name="sugarcanecdf"; version="2.18.0"; sha256="0wghc6wr7iwkql63m3wibjjdcdpqd53z0g5rxdh553sjb0ca2n7z"; depends=[AnnotationDbi]; }; sugarcaneprobe = derive2 { name="sugarcaneprobe"; version="2.18.0"; sha256="17zrydd8xd7m61bp750xlpcak0m3zgl0mvknz9s7mv2a35kp02ih"; depends=[AnnotationDbi]; }; + synaptome_data = derive2 { name="synaptome.data"; version="0.99.3"; sha256="08j7arr8lhm17ikhxxg6f8vx45ixchvh33f2wla2486dvd160pw4"; depends=[AnnotationHub]; }; + synaptome_db = derive2 { name="synaptome.db"; version="0.99.8"; sha256="0g7pah9q1ci0ykm1lf3gdssfxmc33qkc5y428wdb8fzirqh5csx4"; depends=[AnnotationHub DBI dbplyr dplyr igraph Rdpack RSQLite synaptome_data]; }; targetscan_Hs_eg_db = derive2 { name="targetscan.Hs.eg.db"; version="0.6.1"; sha256="1p14jyhn1d2m6kww9vsb96263g8crnrff7qgyiz46pp9ww8mvxf4"; depends=[AnnotationDbi]; }; targetscan_Mm_eg_db = derive2 { name="targetscan.Mm.eg.db"; version="0.6.1"; sha256="0ad6vxpwn9x82qcrpwcy1lwg0q3ik4vabxn01k6gwmbpvydz9cf5"; depends=[AnnotationDbi]; }; test1cdf = derive2 { name="test1cdf"; version="2.18.0"; sha256="0nmkrp4b2p09pg8ndcnfv5y7w94xah6fa5pff60dp1s2s8dcgcr4"; depends=[AnnotationDbi]; }; @@ -958,8 +885,8 @@ in with self; { vitisviniferaprobe = derive2 { name="vitisviniferaprobe"; version="2.18.0"; sha256="1ggz1s37dwvrkhj4vx2civyhap7bgqsshy33lk14z4fjsayfi39a"; depends=[AnnotationDbi]; }; wheatcdf = derive2 { name="wheatcdf"; version="2.18.0"; sha256="1gmbrdilqvm54h6nkb1cm01ki8aipiywd4qj8gpwlm2hqrimr8kr"; depends=[AnnotationDbi]; }; wheatprobe = derive2 { name="wheatprobe"; version="2.18.0"; sha256="1fifi3pvzdrg356idwz0kx7qlf5mssdxlyvwpn3cjgw0z7n7cnw8"; depends=[AnnotationDbi]; }; - worm_db0 = derive2 { name="worm.db0"; version="3.13.0"; sha256="15kmk92fd30br04k6ykhn4nqk9p82r825lhgxz10ypqinkmvzc8l"; depends=[AnnotationDbi]; }; - xenopus_db0 = derive2 { name="xenopus.db0"; version="3.13.0"; sha256="0inx722iyilfwwff091xdvnyz8qnlyk8jdzdhil18vrdf71wrlfl"; depends=[AnnotationDbi]; }; + worm_db0 = derive2 { name="worm.db0"; version="3.14.0"; sha256="0dlllq0m6k0kmndxri1y6csjk7wbl1a2b52pwx1rc76xxm6rcxb3"; depends=[AnnotationDbi]; }; + xenopus_db0 = derive2 { name="xenopus.db0"; version="3.14.0"; sha256="1g26c9z0h95yyr3mshjwlpsnyjpipjfka9pndl8zpri9vq9gr9ny"; depends=[AnnotationDbi]; }; xenopuslaeviscdf = derive2 { name="xenopuslaeviscdf"; version="2.18.0"; sha256="1bcz1hr7gxw6ac4qvw0giph6hfcf5i9b11s274ypq512qc1d32iq"; depends=[AnnotationDbi]; }; xenopuslaevisprobe = derive2 { name="xenopuslaevisprobe"; version="2.18.0"; sha256="0prb14zn2gvgxq8w0y21x1ng51cn3bgjhkppf7zkmnq1xkzvq0pw"; depends=[AnnotationDbi]; }; xlaevis_db = derive2 { name="xlaevis.db"; version="3.2.3"; sha256="0cdi71c8pflb8n4yfxc0wmfi51w6z0dlz7nw5hv0hkx547v79d53"; depends=[AnnotationDbi org_Xl_eg_db]; }; @@ -971,7 +898,7 @@ in with self; { ye6100subbcdf = derive2 { name="ye6100subbcdf"; version="2.18.0"; sha256="1169hv56981b915rlr5w5sn6ppyjd8as7f4k1hbjzadrdrl3glwp"; depends=[AnnotationDbi]; }; ye6100subccdf = derive2 { name="ye6100subccdf"; version="2.18.0"; sha256="0mhr4zd33gfvvivc17k7fb6nvmhq6h3q0xbx2zl09zd6qk09kizm"; depends=[AnnotationDbi]; }; ye6100subdcdf = derive2 { name="ye6100subdcdf"; version="2.18.0"; sha256="11b1fflgc34lrj4yf1p7way5n83cm9c7znsbxpzlwddwyy8qib30"; depends=[AnnotationDbi]; }; - yeast_db0 = derive2 { name="yeast.db0"; version="3.13.0"; sha256="1jcpfrbqqc51q05j4pmrrwd7h6nwnmlj7jx7jnd55wdmx9pfjfzr"; depends=[AnnotationDbi]; }; + yeast_db0 = derive2 { name="yeast.db0"; version="3.14.0"; sha256="0qvy276z44n04m08ixxvflv4ai11mmcxjgzn8zmw00k5ibzzg0a7"; depends=[AnnotationDbi]; }; yeast2_db = derive2 { name="yeast2.db"; version="3.13.0"; sha256="0aqbs3p6f3sc6nyggyk7gvg191b551rwq20009fnk0li50dg1ps6"; depends=[AnnotationDbi org_Sc_sgd_db]; }; yeast2cdf = derive2 { name="yeast2cdf"; version="2.18.0"; sha256="0c68val9x8bfnv4xx0vag9dxwsx5q8dzbj0dpha3nshh12jw48w9"; depends=[AnnotationDbi]; }; yeast2probe = derive2 { name="yeast2probe"; version="2.18.0"; sha256="125nif693qcmxc0nnnz917f9avggcdr8g9rfvx2qdc54a2l7vdb7"; depends=[AnnotationDbi]; }; @@ -980,8 +907,94 @@ in with self; { ygs98frmavecs = derive2 { name="ygs98frmavecs"; version="1.3.0"; sha256="1xrm1209xnknwvad7nvg1a0mbxz15z12yd4x5bia3cq03zcmzf9m"; depends=[]; }; ygs98probe = derive2 { name="ygs98probe"; version="2.18.0"; sha256="0awf6z4j2vb2jk9a9j2r512yd3m31660y68pasa9mp488m270a3q"; depends=[AnnotationDbi]; }; zebrafish_db = derive2 { name="zebrafish.db"; version="3.13.0"; sha256="13a65jxr3r5qjf82h1dr0k9qq20g14canqgqdd11k9gk5h31xhc7"; depends=[AnnotationDbi org_Dr_eg_db]; }; - zebrafish_db0 = derive2 { name="zebrafish.db0"; version="3.13.0"; sha256="0xzrzydc1dzjfx18dgj4vqz2lf9lbz71g967h6bvcf5diwg3765s"; depends=[AnnotationDbi]; }; + zebrafish_db0 = derive2 { name="zebrafish.db0"; version="3.14.0"; sha256="02b425gkhlwc8h6vfv1aq86w06v2zfxfpsy6pw0vljvvaqiqrzj0"; depends=[AnnotationDbi]; }; zebrafishcdf = derive2 { name="zebrafishcdf"; version="2.18.0"; sha256="0sq1xqhblbilvaiabhqyl9gxdj3jg576vgq8v0cls1zvvx0isrx0"; depends=[AnnotationDbi]; }; zebrafishprobe = derive2 { name="zebrafishprobe"; version="2.18.0"; sha256="1pb8z2rdhq11hq391xyi236scyafbp56kbhhwsnha36yygz5drw0"; depends=[AnnotationDbi]; }; - + LRBase_Ath_eg_db = derive2 { name="LRBase.Ath.eg.db"; version="2.0.1"; sha256="1f9yp9rfaydzz24bhl795379clcinibi4kavxzzavrvqfvkrgw84"; depends=[LRBaseDbi RSQLite]; broken = true; }; + LRBase_Bta_eg_db = derive2 { name="LRBase.Bta.eg.db"; version="2.0.1"; sha256="004ajnirlqlw5zknhv456z5ziiig57qmcdp3w2cr7izdk2d97lbc"; depends=[LRBaseDbi RSQLite]; broken = true; }; + LRBase_Cel_eg_db = derive2 { name="LRBase.Cel.eg.db"; version="2.0.1"; sha256="0iazyqrqgc4g5kk25vzssfxjxfvp70mhnx4fpwcg73pfy4wizxjp"; depends=[LRBaseDbi RSQLite]; broken = true; }; + LRBase_Dme_eg_db = derive2 { name="LRBase.Dme.eg.db"; version="2.0.1"; sha256="1czhw53163cmamigzy30kwa0h3pid95qq47pf6f3b4sy8x3sd9if"; depends=[LRBaseDbi RSQLite]; broken = true; }; + LRBase_Dre_eg_db = derive2 { name="LRBase.Dre.eg.db"; version="2.0.1"; sha256="0xwzwhc1ksyp1k3xxd0mdk8bkw1npblwrpalnyd4awlx4lh6k8b5"; depends=[LRBaseDbi RSQLite]; broken = true; }; + LRBase_Gga_eg_db = derive2 { name="LRBase.Gga.eg.db"; version="2.0.1"; sha256="1nkgli39szcjh09ywn1a3zbj0k5pqng9ixaqkl0yhqqy626vk0w0"; depends=[LRBaseDbi RSQLite]; broken = true; }; + LRBase_Hsa_eg_db = derive2 { name="LRBase.Hsa.eg.db"; version="2.0.1"; sha256="0lvrjspmzjpx9q77lqwpqmr5jpqaqv8rjyfr3pxyv1d0kfdnqii0"; depends=[LRBaseDbi RSQLite]; broken = true; }; + LRBase_Mmu_eg_db = derive2 { name="LRBase.Mmu.eg.db"; version="2.0.1"; sha256="105nmhlg80jwljkpn73cx4lc4nsxadcl4pfbyl8pj1ppk1cdj1dz"; depends=[LRBaseDbi RSQLite]; broken = true; }; + LRBase_Pab_eg_db = derive2 { name="LRBase.Pab.eg.db"; version="2.0.1"; sha256="0p99lx34fgvknw6301r8r375w0mapsan7f8aqjd2jxvjaig2375s"; depends=[LRBaseDbi RSQLite]; broken = true; }; + LRBase_Rno_eg_db = derive2 { name="LRBase.Rno.eg.db"; version="2.0.1"; sha256="1hpw675m2y6nm3i3mvh9whxlaz5zpvz4wr55rha7yisxfsj6qq9a"; depends=[LRBaseDbi RSQLite]; broken = true; }; + LRBase_Ssc_eg_db = derive2 { name="LRBase.Ssc.eg.db"; version="2.0.1"; sha256="18pa9f16hn4awynbhmvrkdxdprr2dj0mip132sk1mfkxic2cf014"; depends=[LRBaseDbi RSQLite]; broken = true; }; + LRBase_Xtr_eg_db = derive2 { name="LRBase.Xtr.eg.db"; version="2.0.1"; sha256="18bk6p405cpws0ynh0q17w5fmriplmamhy1rds5rc6hf05lr2sb8"; depends=[LRBaseDbi RSQLite]; broken = true; }; + MafDb_gnomAD_r3_0_GRCh38 = derive2 { name="MafDb.gnomAD.r3.0.GRCh38"; version="3.13.0"; sha256="0f1qjngpshdpdg6i05qh8pmr56x4wvx29ism3vsid099ammnxdca"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; broken = true; }; + MafH5_gnomAD_r3_0_GRCh38 = derive2 { name="MafH5.gnomAD.r3.0.GRCh38"; version="3.13.0"; sha256="1hhm0qla0av6fcgrf4wivwfczs7b6a473qswii2axpxq7srbsgaz"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores HDF5Array IRanges rhdf5 S4Vectors]; broken = true; }; + MeSH_AOR_db = derive2 { name="MeSH.AOR.db"; version="1.15.1"; sha256="1d33krs3xs0pa14gm7haiaglnlx5z41m6gx92gg8ckfpblyz49q2"; depends=[MeSHDbi]; broken = true; }; + MeSH_Aca_eg_db = derive2 { name="MeSH.Aca.eg.db"; version="1.15.1"; sha256="195hs3x0sfs4s5kry452r0fhnq19ayv82j4dr1394zr104r17kb1"; depends=[MeSHDbi]; broken = true; }; + MeSH_Aga_PEST_eg_db = derive2 { name="MeSH.Aga.PEST.eg.db"; version="1.15.1"; sha256="1kyjhnfv3b0jxdali2v1wdqd1zkl9vsf2z9ba6dkhlm1hghsnv63"; depends=[MeSHDbi]; broken = true; }; + MeSH_Ame_eg_db = derive2 { name="MeSH.Ame.eg.db"; version="1.15.1"; sha256="1szzcnf5fwaqpj2ra2b1xics971lwg3rnzdria8j3yl705zxnl3g"; depends=[MeSHDbi]; broken = true; }; + MeSH_Aml_eg_db = derive2 { name="MeSH.Aml.eg.db"; version="1.15.1"; sha256="1pgfhm5qhm9d7s0sr4iij7272m2i6y9di51r137mrmpc5fcc1mmx"; depends=[MeSHDbi]; broken = true; }; + MeSH_Ana_eg_db = derive2 { name="MeSH.Ana.eg.db"; version="1.15.1"; sha256="117sz11lg3kl90v7bkai3acyvcxjggar8fpgyac99369pinkqikp"; depends=[MeSHDbi]; broken = true; }; + MeSH_Ani_FGSC_eg_db = derive2 { name="MeSH.Ani.FGSC.eg.db"; version="1.15.1"; sha256="1hwhvm7ip3kjdb31glasixqzwja37352x70id18n2bfbjgq4x3r2"; depends=[MeSHDbi]; broken = true; }; + MeSH_Ath_eg_db = derive2 { name="MeSH.Ath.eg.db"; version="1.15.1"; sha256="12dmbr6aynxyfg0cv5jrshj27rmk89apbpsg1zxf7cmqkkvq8bcv"; depends=[MeSHDbi]; broken = true; }; + MeSH_Bfl_eg_db = derive2 { name="MeSH.Bfl.eg.db"; version="1.15.1"; sha256="1y6r6hillawafxgxvkcffg8bx125ra6b4f9cclcz1n3qzqfnjj0s"; depends=[MeSHDbi]; broken = true; }; + MeSH_Bsu_168_eg_db = derive2 { name="MeSH.Bsu.168.eg.db"; version="1.15.1"; sha256="0d363769blvq0hm3yzbff007sn3sq8fb4gay8qgrcj2jrnnd4wp4"; depends=[MeSHDbi]; broken = true; }; + MeSH_Bta_eg_db = derive2 { name="MeSH.Bta.eg.db"; version="1.15.1"; sha256="0g9m2y209gl6nyn05j4fznnh21raz8xwj1if7zb1aixxzykqi313"; depends=[MeSHDbi]; broken = true; }; + MeSH_Cal_SC5314_eg_db = derive2 { name="MeSH.Cal.SC5314.eg.db"; version="1.15.1"; sha256="1z3id2838fd14x9nib931cmjb0x339hq1izdr3gq8kc4yfvl40r5"; depends=[MeSHDbi]; broken = true; }; + MeSH_Cbr_eg_db = derive2 { name="MeSH.Cbr.eg.db"; version="1.15.1"; sha256="0fbg3sv5addw9ad586nyh0vbwfdnjzwqnqxa8jz8plpmjn043wl0"; depends=[MeSHDbi]; broken = true; }; + MeSH_Cel_eg_db = derive2 { name="MeSH.Cel.eg.db"; version="1.15.1"; sha256="19hp0f0vqlzdqbn9qs839b8sflbcww02k7fzsmyzpqd38kvhwf2w"; depends=[MeSHDbi]; broken = true; }; + MeSH_Cfa_eg_db = derive2 { name="MeSH.Cfa.eg.db"; version="1.15.1"; sha256="19jjdp5cq1pisgk7nxwi8cdzjk44bbh02fjy027f50i6dnj75i7i"; depends=[MeSHDbi]; broken = true; }; + MeSH_Cin_eg_db = derive2 { name="MeSH.Cin.eg.db"; version="1.15.1"; sha256="0y53q8q1ca93ri6msnjzj3m6rqangidfvvchirgk9pa4k67dh534"; depends=[MeSHDbi]; broken = true; }; + MeSH_Cja_eg_db = derive2 { name="MeSH.Cja.eg.db"; version="1.15.1"; sha256="0jsbncm9ggi63fjng8nl08bhzajgjrckfq2ngqbcnmf8p1gzg60a"; depends=[MeSHDbi]; broken = true; }; + MeSH_Cpo_eg_db = derive2 { name="MeSH.Cpo.eg.db"; version="1.15.1"; sha256="1w47fmy9akwxxsvdx7d1s0qdzafxyghl6lh33cy5jcb4bj525635"; depends=[MeSHDbi]; broken = true; }; + MeSH_Cre_eg_db = derive2 { name="MeSH.Cre.eg.db"; version="1.15.1"; sha256="0bq8r70vv55shfgdx94qiympk0vf9rf7xr467bps82ks0kklzr7v"; depends=[MeSHDbi]; broken = true; }; + MeSH_Dan_eg_db = derive2 { name="MeSH.Dan.eg.db"; version="1.15.1"; sha256="1k5dfwm5fn4zghaphsjs0f7jzjcdcay1afm2c09qyh7xv9m1cpry"; depends=[MeSHDbi]; broken = true; }; + MeSH_Dda_3937_eg_db = derive2 { name="MeSH.Dda.3937.eg.db"; version="1.15.1"; sha256="0idh5djnz1wwxp09xpjwac4dhz6kvwp1l0j92195b0xwv4n11pzk"; depends=[MeSHDbi]; broken = true; }; + MeSH_Ddi_AX4_eg_db = derive2 { name="MeSH.Ddi.AX4.eg.db"; version="1.15.1"; sha256="0aprxgrlz7hnk31fr6vqpprahjn07r48dnva9gszgyp740mx1m1d"; depends=[MeSHDbi]; broken = true; }; + MeSH_Der_eg_db = derive2 { name="MeSH.Der.eg.db"; version="1.15.1"; sha256="0wbv1f5bsb3xl8rj1qndb0n77rmg2s9m5nl2f95naqaf3hfypsmd"; depends=[MeSHDbi]; broken = true; }; + MeSH_Dgr_eg_db = derive2 { name="MeSH.Dgr.eg.db"; version="1.15.1"; sha256="07zzwf4aqpkvjmbbvzc6bq662frxblsx4l0ljna70gr4xb218swl"; depends=[MeSHDbi]; broken = true; }; + MeSH_Dme_eg_db = derive2 { name="MeSH.Dme.eg.db"; version="1.15.1"; sha256="1fls5b3w6n2n9vy4fsvri74f6r2qmlrx8vlrgqmb7plxdp35q0jw"; depends=[MeSHDbi]; broken = true; }; + MeSH_Dmo_eg_db = derive2 { name="MeSH.Dmo.eg.db"; version="1.15.1"; sha256="0fphjwbxnymf30ccppjyfgwz0pv5n1lwzm7h05lppk7a7f8ys665"; depends=[MeSHDbi]; broken = true; }; + MeSH_Dpe_eg_db = derive2 { name="MeSH.Dpe.eg.db"; version="1.15.1"; sha256="0921dxba9crqml8in0hwnwlzcqvjhhi94mllbmksp8cwka48rzs8"; depends=[MeSHDbi]; broken = true; }; + MeSH_Dre_eg_db = derive2 { name="MeSH.Dre.eg.db"; version="1.15.1"; sha256="087pcpbskgc59c04bn3201d4agy9vsma0r1wsf60zxr3l491yn6v"; depends=[MeSHDbi]; broken = true; }; + MeSH_Dse_eg_db = derive2 { name="MeSH.Dse.eg.db"; version="1.15.1"; sha256="0drqyd131l7vr9v899hjvva4d5mmv7fbhmflgz49i2iy3360xz32"; depends=[MeSHDbi]; broken = true; }; + MeSH_Dsi_eg_db = derive2 { name="MeSH.Dsi.eg.db"; version="1.15.1"; sha256="0i3j3392d690xkg7cfzqnw0s09q8mpiq2wfpifkk0hbxnc5aahwd"; depends=[MeSHDbi]; broken = true; }; + MeSH_Dvi_eg_db = derive2 { name="MeSH.Dvi.eg.db"; version="1.15.1"; sha256="168jy0v39j2fpy59s3dpz0xs3axmnc7kb1dv88b5j1xccymkd3gl"; depends=[MeSHDbi]; broken = true; }; + MeSH_Dya_eg_db = derive2 { name="MeSH.Dya.eg.db"; version="1.15.1"; sha256="1ibbh07nczp75f0x2mnq5mnli6fgg7mn2aqk434l3iwjx686mcpj"; depends=[MeSHDbi]; broken = true; }; + MeSH_Eca_eg_db = derive2 { name="MeSH.Eca.eg.db"; version="1.15.1"; sha256="1b16fqx56sl1ask5hk3krw2p7ph5q9wg78zygbd1pbx04q95469r"; depends=[MeSHDbi]; broken = true; }; + MeSH_Eco_K12_MG1655_eg_db = derive2 { name="MeSH.Eco.K12.MG1655.eg.db"; version="1.15.1"; sha256="0p3gf9hwr3hrzlczwr7lhwxnl46iqfz66dvz38h7c02bjlpjjdjd"; depends=[MeSHDbi]; broken = true; }; + MeSH_Eco_O157_H7_Sakai_eg_db = derive2 { name="MeSH.Eco.O157.H7.Sakai.eg.db"; version="1.15.1"; sha256="0wda4hkzwfvkn51fchzpwgc5p9964yyfjg8bpvk2331zx9lsvgs2"; depends=[MeSHDbi]; broken = true; }; + MeSH_Gga_eg_db = derive2 { name="MeSH.Gga.eg.db"; version="1.15.1"; sha256="0d72haww3zi1x06qllwnlsrwkwivn6z8ws9nkrnb24vn3saxv41b"; depends=[MeSHDbi]; broken = true; }; + MeSH_Gma_eg_db = derive2 { name="MeSH.Gma.eg.db"; version="1.15.1"; sha256="1xbwkxn351yhjbc529y4fkj366a3pnk1b8s3h1ys5w8czz3szfn3"; depends=[MeSHDbi]; broken = true; }; + MeSH_Hsa_eg_db = derive2 { name="MeSH.Hsa.eg.db"; version="1.15.1"; sha256="1cgfwp8hk40af0d5rzi3vsmvx22jp1nwsgyld1mzkry2i8ilbzyj"; depends=[MeSHDbi]; broken = true; }; + MeSH_Laf_eg_db = derive2 { name="MeSH.Laf.eg.db"; version="1.15.1"; sha256="1r2bnakd47gq95s47rywhak7csz77zphml0zfrchi189kh01prg4"; depends=[MeSHDbi]; broken = true; }; + MeSH_Lma_eg_db = derive2 { name="MeSH.Lma.eg.db"; version="1.15.1"; sha256="1x3rjw2hvzxaq68abyh8b9bw1zizkrqxj6pgd5d6ggcl8l0x1fnz"; depends=[MeSHDbi]; broken = true; }; + MeSH_Mdo_eg_db = derive2 { name="MeSH.Mdo.eg.db"; version="1.15.1"; sha256="156dc2vssa8x0a0985fhyx7h5vaw4d3ingz0s09181ai9fxqc1jx"; depends=[MeSHDbi]; broken = true; }; + MeSH_Mes_eg_db = derive2 { name="MeSH.Mes.eg.db"; version="1.15.1"; sha256="0a3gdmpp9y6s6aw7lyh7j25dahgmkb0azg7g57073fqwhgivs2mx"; depends=[MeSHDbi]; broken = true; }; + MeSH_Mga_eg_db = derive2 { name="MeSH.Mga.eg.db"; version="1.15.1"; sha256="1gil8g9h8qyd0b4qmqrk7dakvjqwlychzld0wv20z7hipqas975d"; depends=[MeSHDbi]; broken = true; }; + MeSH_Miy_eg_db = derive2 { name="MeSH.Miy.eg.db"; version="1.15.1"; sha256="1p1f6vk1f360zx4wkzcyczi4p4x6mgf4pfrvhslz4kn6xg0cnm73"; depends=[MeSHDbi]; broken = true; }; + MeSH_Mml_eg_db = derive2 { name="MeSH.Mml.eg.db"; version="1.15.1"; sha256="16372gs4nh9cr18xy4nzssjmdarxbkx7c6208s4vx6232mbc1azl"; depends=[MeSHDbi]; broken = true; }; + MeSH_Mmu_eg_db = derive2 { name="MeSH.Mmu.eg.db"; version="1.15.1"; sha256="1557vn9sy1a2picwj27gkajqp8qlqza0yqf69czimd1myskdicps"; depends=[MeSHDbi]; broken = true; }; + MeSH_Mtr_eg_db = derive2 { name="MeSH.Mtr.eg.db"; version="1.15.1"; sha256="1gi2v9x0jja6ambdljp9m11g6yhd3wcfcjblgx58i42ix5h5mviw"; depends=[MeSHDbi]; broken = true; }; + MeSH_Nle_eg_db = derive2 { name="MeSH.Nle.eg.db"; version="1.15.1"; sha256="1vplci90jb1cihwbxqkynqk9frr7j09gh80q020dhm24f3rwlfqk"; depends=[MeSHDbi]; broken = true; }; + MeSH_Oan_eg_db = derive2 { name="MeSH.Oan.eg.db"; version="1.15.1"; sha256="1fmwfmws100qmg3wy25qg0s36nk81rwf6b1csvqg4vfy9p0r2pdw"; depends=[MeSHDbi]; broken = true; }; + MeSH_Ocu_eg_db = derive2 { name="MeSH.Ocu.eg.db"; version="1.15.1"; sha256="019ydfl6dqymn8yk2n101rdrmyv82ypcbvwmslimdhnlk3bzrj3a"; depends=[MeSHDbi]; broken = true; }; + MeSH_Oni_eg_db = derive2 { name="MeSH.Oni.eg.db"; version="1.15.1"; sha256="1jadbca3c3xw24p8zvrd3q7ijjrrfjxkf1bw08ay3a9gazqyv0rh"; depends=[MeSHDbi]; broken = true; }; + MeSH_Osa_eg_db = derive2 { name="MeSH.Osa.eg.db"; version="1.15.1"; sha256="028lw4xjd1v7afp1l0xizswciy1hxhllrf9ij328si5a0kb3dxwc"; depends=[MeSHDbi]; broken = true; }; + MeSH_PCR_db = derive2 { name="MeSH.PCR.db"; version="1.15.1"; sha256="1hdk3s3ixh1haqp70ww547cbnwhllk6fhc4fgriidw0jivbkawx1"; depends=[MeSHDbi]; broken = true; }; + MeSH_Pab_eg_db = derive2 { name="MeSH.Pab.eg.db"; version="1.15.1"; sha256="00hy436bbk7jza00dv2xgnbji3k72x405n88pgd8d9rgj7cmqvjp"; depends=[MeSHDbi]; broken = true; }; + MeSH_Pae_PAO1_eg_db = derive2 { name="MeSH.Pae.PAO1.eg.db"; version="1.15.1"; sha256="04pprh5m431cpk4whfsiqb8fglda82jk4d06nhlz9k9nd5x9np82"; depends=[MeSHDbi]; broken = true; }; + MeSH_Pfa_3D7_eg_db = derive2 { name="MeSH.Pfa.3D7.eg.db"; version="1.15.1"; sha256="1a0q8xyhfvjvdsxq5hgh255q3rg823l1b8nyswnkai3sl3hq3szd"; depends=[MeSHDbi]; broken = true; }; + MeSH_Pto_eg_db = derive2 { name="MeSH.Pto.eg.db"; version="1.15.1"; sha256="0z4l55029lrmvysj26vn97c690yyhji46axvxsdjvzwp8llhwy3m"; depends=[MeSHDbi]; broken = true; }; + MeSH_Ptr_eg_db = derive2 { name="MeSH.Ptr.eg.db"; version="1.15.1"; sha256="1h1ci6y0hjii1r6gp24y2m7qqn8d0r954swbc9crb0i2mfak7l1a"; depends=[MeSHDbi]; broken = true; }; + MeSH_Rno_eg_db = derive2 { name="MeSH.Rno.eg.db"; version="1.15.1"; sha256="1rfxbfz72xazay0rszhjvxxqry532dx72kkp5vd0pi44536kly49"; depends=[MeSHDbi]; broken = true; }; + MeSH_Sce_S288c_eg_db = derive2 { name="MeSH.Sce.S288c.eg.db"; version="1.15.1"; sha256="100fcybyv4lsnxj23ndchhn25i2bfppk6w0y2lfnrla1vn8p5nnp"; depends=[MeSHDbi]; broken = true; }; + MeSH_Sco_A32_eg_db = derive2 { name="MeSH.Sco.A32.eg.db"; version="1.15.1"; sha256="1y5nh82hbwh7higzg0fv4rkvxl2p988w7aznygaq5z3g1q15l9sp"; depends=[MeSHDbi]; broken = true; }; + MeSH_Sil_eg_db = derive2 { name="MeSH.Sil.eg.db"; version="1.15.1"; sha256="09vj1ix13kxyb330s69nnig07a7cwyz7nasvv5kv83cnc27df92m"; depends=[MeSHDbi]; broken = true; }; + MeSH_Spu_eg_db = derive2 { name="MeSH.Spu.eg.db"; version="1.15.1"; sha256="0gmpcabxs0d61krhyllyrb92x0xgr67jv2wc8qbjv8m8vpiynnxh"; depends=[MeSHDbi]; broken = true; }; + MeSH_Ssc_eg_db = derive2 { name="MeSH.Ssc.eg.db"; version="1.15.1"; sha256="05ybk27chnxf3mqvngfzlrmnlpjdraqzd0qcsj6zmhsyx6j20qh5"; depends=[MeSHDbi]; broken = true; }; + MeSH_Syn_eg_db = derive2 { name="MeSH.Syn.eg.db"; version="1.15.1"; sha256="1rkc9gv9an0zan04qalmyvry380yhf2vx8scfvck9jwkq5x05w97"; depends=[MeSHDbi]; broken = true; }; + MeSH_Tbr_9274_eg_db = derive2 { name="MeSH.Tbr.9274.eg.db"; version="1.15.1"; sha256="1nak2sz25l8mc3f60h84519wm7lb8iamj9116mbf4b6ybdp0k4gd"; depends=[MeSHDbi]; broken = true; }; + MeSH_Tgo_ME49_eg_db = derive2 { name="MeSH.Tgo.ME49.eg.db"; version="1.15.1"; sha256="16j9wiv0lgik94yp7vqgcc5lykjynn07sbvvq2llcyvr6n3l3gwy"; depends=[MeSHDbi]; broken = true; }; + MeSH_Tgu_eg_db = derive2 { name="MeSH.Tgu.eg.db"; version="1.15.1"; sha256="0j0ygcrfx2df2q597wkkiqg9264n2v7bsh3kfvra9ma3wdxqlipd"; depends=[MeSHDbi]; broken = true; }; + MeSH_Vvi_eg_db = derive2 { name="MeSH.Vvi.eg.db"; version="1.15.1"; sha256="0dnhjs43v9q42w82km5vvs8p8zniljvskiv946psy2z8l27q6srj"; depends=[MeSHDbi]; broken = true; }; + MeSH_Xla_eg_db = derive2 { name="MeSH.Xla.eg.db"; version="1.15.1"; sha256="1n3kmkqgb8nnm13jrhn6dzpjcqgddf7k68vsm52bkg7dh3dfcn8v"; depends=[MeSHDbi]; broken = true; }; + MeSH_Xtr_eg_db = derive2 { name="MeSH.Xtr.eg.db"; version="1.15.1"; sha256="19waylyzyga4zqygar6509gq36a8z36fbpz55msb0zsin24s0y82"; depends=[MeSHDbi]; broken = true; }; + MeSH_Zma_eg_db = derive2 { name="MeSH.Zma.eg.db"; version="1.15.1"; sha256="0plldymwirg8hyj9yv5jw4ldrlnvf5dx60gymb8rgmmxvrmhay66"; depends=[MeSHDbi]; broken = true; }; + MeSH_db = derive2 { name="MeSH.db"; version="1.15.1"; sha256="0ixlxcakcc9f6d3dzxfdda4nh5gnivqvbi9dw7c85c0145dgnpzx"; depends=[MeSHDbi]; broken = true; }; } diff --git a/pkgs/development/r-modules/bioc-experiment-packages.nix b/pkgs/development/r-modules/bioc-experiment-packages.nix index 2e0ce724ebcb..113b28ceeaa3 100644 --- a/pkgs/development/r-modules/bioc-experiment-packages.nix +++ b/pkgs/development/r-modules/bioc-experiment-packages.nix @@ -4,403 +4,415 @@ # Rscript generate-r-packages.R bioc-experiment >new && mv new bioc-experiment-packages.nix { self, derive }: -let derive2 = derive { biocVersion = "3.13"; }; +let derive2 = derive { biocVersion = "3.14"; }; in with self; { - ABAData = derive2 { name="ABAData"; version="1.22.0"; sha256="1q4kl02f0dvbyqlsqhfj4m42vlsz6vsp9p1asgfsqlpbzjflc8r3"; depends=[]; }; - ALL = derive2 { name="ALL"; version="1.34.0"; sha256="0qwbinc07s5y6d2vmlmbl4rrsbsxp5f6bndanpaamc5vc0rnydvc"; depends=[Biobase]; }; - ALLMLL = derive2 { name="ALLMLL"; version="1.32.0"; sha256="175rxan8wgzqc3x8gscn9v3fpfidgi0wypzqw6d6r8gzf3a0h01n"; depends=[affy]; }; - ARRmData = derive2 { name="ARRmData"; version="1.28.0"; sha256="1gqz5jbfh6k3pm52pggdgccp6ydp51wnlwys038jak15zjxk876m"; depends=[]; }; - ASICSdata = derive2 { name="ASICSdata"; version="1.12.0"; sha256="0xprdz7g0xa0ha219c0jbvdf3k4vnqfilf3420s631h2fp7kcjg6"; depends=[]; }; - Affyhgu133A2Expr = derive2 { name="Affyhgu133A2Expr"; version="1.28.0"; sha256="1gn5cb42iaj534ik80kci0qqxx38jwjnw1qcvhr4z91wa8qgzrl5"; depends=[]; }; - Affyhgu133Plus2Expr = derive2 { name="Affyhgu133Plus2Expr"; version="1.26.0"; sha256="0g9i38hmzqyzg073p426q2kha67g62y07p2756ans8cmyfsrn9y9"; depends=[]; }; - Affyhgu133aExpr = derive2 { name="Affyhgu133aExpr"; version="1.30.0"; sha256="1g7xc2qldqpc8pg07l91gv593xm8rffygdwy27h5v1xz97wm8p18"; depends=[]; }; - AffymetrixDataTestFiles = derive2 { name="AffymetrixDataTestFiles"; version="0.30.0"; sha256="0998584mz6ggl0j84920bwc69f7i6p24i6ki3c6dhqjjkw7bg0xf"; depends=[]; }; - Affymoe4302Expr = derive2 { name="Affymoe4302Expr"; version="1.30.0"; sha256="15zx9bf2cqv3drf9yi6rkdapwk1n7i5iwymj72nfk8qn3k8hn4x0"; depends=[]; }; - AmpAffyExample = derive2 { name="AmpAffyExample"; version="1.32.0"; sha256="0042i6ldqdm2p9lr8cyzkf1638ka5ycmzvjxmwhg0mgbrzqs9d57"; depends=[affy]; }; - AneuFinderData = derive2 { name="AneuFinderData"; version="1.20.0"; sha256="1kp3y20zhmsgy3yq02sd0ascqgg3m83whrld3dw6sdbibfxdr0wc"; depends=[]; }; - AshkenazimSonChr21 = derive2 { name="AshkenazimSonChr21"; version="1.22.0"; sha256="0bcmyxl1qidb5fz2s27ljjlf4f7kq5ii0287sapvq0wf1ll1z6nr"; depends=[]; }; - AssessORFData = derive2 { name="AssessORFData"; version="1.10.0"; sha256="0vnq5mdds7ikyivn03yvfrzwi8aqn4k1pg72m3n6klm3dlfmf3vn"; depends=[DECIPHER]; }; - BeadArrayUseCases = derive2 { name="BeadArrayUseCases"; version="1.30.1"; sha256="17a3rrl1lqm64cwjaw0vx68gavwl21n5qfnk5lsx7b05jiw2g2ly"; depends=[beadarray GEOquery limma]; }; - BeadSorted_Saliva_EPIC = derive2 { name="BeadSorted.Saliva.EPIC"; version="1.0.0"; sha256="18glvbpq5anbciw6bdca7z8fcd2yscq0bh83r0ynsnmgi1an63px"; depends=[ExperimentHub minfi]; }; - BioImageDbs = derive2 { name="BioImageDbs"; version="1.0.5"; sha256="1pdzaql62kb7xcjjv5az9xpwfr035cq32lvq7kadlakcibrgsfah"; depends=[animation EBImage einsum ExperimentHub filesstrings magick magrittr markdown rmarkdown]; }; - BloodCancerMultiOmics2017 = derive2 { name="BloodCancerMultiOmics2017"; version="1.12.0"; sha256="0rj6if7l84lanjms3w86iwcmxgq3bfvksvlahdzkdw44qgyqlj13"; depends=[beeswarm Biobase DESeq2 devtools dplyr ggdendro ggplot2 glmnet gtable ipflasso RColorBrewer reshape2 scales SummarizedExperiment survival tibble]; }; - CCl4 = derive2 { name="CCl4"; version="1.30.0"; sha256="15naslzbccdx0ibmlyxjmyqs556ay35cadc4224d5cn7abid0yp7"; depends=[Biobase limma]; }; - CLL = derive2 { name="CLL"; version="1.32.0"; sha256="0x5y7k683h5kjfiknjfxk6pw5d577ranl9ijqq31fzms0r3lvnq0"; depends=[affy Biobase]; }; - CLLmethylation = derive2 { name="CLLmethylation"; version="1.12.0"; sha256="1j8a9f7kg78dc6sibrl66yyh96w6h7lzqn8y2hvq8n8w4n2ki7sb"; depends=[ExperimentHub SummarizedExperiment]; }; - COHCAPanno = derive2 { name="COHCAPanno"; version="1.28.0"; sha256="1g74w1yymvkx8yb85apfzgfl11r90rga9pniw7rf9lg0bisl6662"; depends=[]; }; - CONFESSdata = derive2 { name="CONFESSdata"; version="1.20.0"; sha256="0y66bwgspxrvypbzj68749sq08fxc1z1f5ma2hjq907igzkw3x8c"; depends=[]; }; - COPDSexualDimorphism_data = derive2 { name="COPDSexualDimorphism.data"; version="1.28.0"; sha256="0nz96nz8f9ca88p844yr2hxhx87x9z55fbd5z8l9ribs1pcm6053"; depends=[]; }; - COSMIC_67 = derive2 { name="COSMIC.67"; version="1.28.0"; sha256="1yksryh96pljridizb33z956z0k47vgb84l6r44wdzq3vsjxmrgr"; depends=[GenomicRanges SummarizedExperiment VariantAnnotation]; }; - CRCL18 = derive2 { name="CRCL18"; version="1.12.0"; sha256="095l0j0vhsrj97gyzqyk97c0j555ix7swiqgjmcahm2flqgxnksw"; depends=[Biobase]; }; - CardinalWorkflows = derive2 { name="CardinalWorkflows"; version="1.24.0"; sha256="0m0yzr4iq3c662bj19fc5aahkxs4g5s5v9vjyz7jq5ivqyrxfhh2"; depends=[Cardinal]; }; - CellMapperData = derive2 { name="CellMapperData"; version="1.18.0"; sha256="0xm2rh7s2gwgid9fbzbph2snm6slgg9sa4r99b7ai317qfi2x86z"; depends=[CellMapper ExperimentHub]; }; - ChAMPdata = derive2 { name="ChAMPdata"; version="2.24.0"; sha256="1i7c8m4qqblp9cj8ndiinma6xszaq5ncg3d468n9gi0nw1s9qqxv"; depends=[BiocGenerics GenomicRanges]; }; - ChIC_data = derive2 { name="ChIC.data"; version="1.12.0"; sha256="08gxdzpi7d9zycx7vp9y40bpw4ljkym9j5p7b3dxqw1b9s1vwmaa"; depends=[caret genomeIntervals randomForest]; }; - ChIPXpressData = derive2 { name="ChIPXpressData"; version="1.30.0"; sha256="1h3df9475yglgf69f8xyb36cxm7gb14kai3c2jvdwnhf9y7g30hf"; depends=[bigmemory]; }; - ChIPexoQualExample = derive2 { name="ChIPexoQualExample"; version="1.16.1"; sha256="120z13sfhnd6rdx99ssfydnizx032yviysfya04dvvlynbpsaf1f"; depends=[]; }; - ChimpHumanBrainData = derive2 { name="ChimpHumanBrainData"; version="1.30.0"; sha256="0v45yy0vpcrba3vmjsw9n64c7klzpky5k121ydf6g17msk5vynr6"; depends=[affy hexbin limma qvalue statmod]; }; - CluMSIDdata = derive2 { name="CluMSIDdata"; version="1.8.0"; sha256="0ggvbml8rmsn2rmp61j2q6nvhgqn9p99lx02avflhyas4rzlslh3"; depends=[]; }; - ConnectivityMap = derive2 { name="ConnectivityMap"; version="1.28.0"; sha256="0jkqcppnqzj7kl7k74nbc3qzynbwn5sh4fivirs9znvl6gsmn6vr"; depends=[]; }; - CopyNeutralIMA = derive2 { name="CopyNeutralIMA"; version="1.10.0"; sha256="004k5rcyz780gv1y6r3d661pm1xvrjh1hry53x1zy0gd5z8slvz0"; depends=[ExperimentHub Rdpack]; }; - CopyhelpeR = derive2 { name="CopyhelpeR"; version="1.24.0"; sha256="1mx7ia8aca9gxzgk6hds5hya2pix2wwxwhvj5h8qq9r0z5a3g4vl"; depends=[]; }; - DAPARdata = derive2 { name="DAPARdata"; version="1.22.2"; sha256="135kdn2rnj5bkdj49k08daidvm4h0zgdc9rqavwjpjx4wnddpdzp"; depends=[knitr MSnbase]; }; - DExMAdata = derive2 { name="DExMAdata"; version="1.0.0"; sha256="0brw2qspvgpv149kkwv30cj3lyyv7pl00bk801yga2xv3mi4hl5f"; depends=[Biobase]; }; - DLBCL = derive2 { name="DLBCL"; version="1.32.0"; sha256="17irfvdins7cb1kinbf3x0cbmjd51dspz25fv1vbv7531rspwc3b"; depends=[Biobase]; }; - DMRcatedata = derive2 { name="DMRcatedata"; version="2.10.0"; sha256="1nxpxh5pxl4rv9m62xia6c969jzpkc4viw7dfz89fxqdmk1sfx5d"; depends=[ExperimentHub GenomicFeatures Gviz IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 plyr readxl rtracklayer]; }; - DREAM4 = derive2 { name="DREAM4"; version="1.28.0"; sha256="18wbgrlax63kaqbrwr4gl3pid1xwdp6z9dcvrxyp9gx099ipw7ww"; depends=[SummarizedExperiment]; }; - DeSousa2013 = derive2 { name="DeSousa2013"; version="1.28.0"; sha256="11l3rq59i49p3x9cl3x7k17hv57vijrjingap7hhsrjg0jgqk25p"; depends=[affy AnnotationDbi Biobase cluster ConsensusClusterPlus frma frmaTools gplots hgu133plus2_db hgu133plus2frmavecs pamr rgl ROCR siggenes survival sva]; }; - DmelSGI = derive2 { name="DmelSGI"; version="1.24.0"; sha256="1x7whi3r5dn4shndc9cvxy89j79gyy1pvjdni3g5l8qgyd7baxhg"; depends=[abind gplots igraph knitr limma rhdf5 TSP]; }; - DonaPLLP2013 = derive2 { name="DonaPLLP2013"; version="1.30.0"; sha256="1mqr1kmyh23sn50gj3cyljsmbr5fqkips5gbmkkcmkdcli3jz8jz"; depends=[EBImage]; }; - DropletTestFiles = derive2 { name="DropletTestFiles"; version="1.2.0"; sha256="0nkpcpwfc8cmyfklwfa1zzvx58npyfp07j4pk5q26wp3ly02y80i"; depends=[AnnotationHub ExperimentHub S4Vectors]; }; - DrugVsDiseasedata = derive2 { name="DrugVsDiseasedata"; version="1.28.0"; sha256="1h4x1gisl26rknmba00ygv25s8rxfdlxk32mdf4n2z5q68nsl7pq"; depends=[]; }; - DuoClustering2018 = derive2 { name="DuoClustering2018"; version="1.10.0"; sha256="1lbgznbllpi23lf5ap58fr89y5x2m54k3wdy6myv62336jk7m8w5"; depends=[dplyr ExperimentHub ggplot2 ggthemes magrittr mclust purrr reshape2 tidyr viridis]; }; - DvDdata = derive2 { name="DvDdata"; version="1.28.0"; sha256="0gh4h1zapw8b0i3jwcnwnhblzqw3rsb0ah7wmsmqv0mzmimvpasc"; depends=[]; }; - EGSEAdata = derive2 { name="EGSEAdata"; version="1.20.0"; sha256="10lqni9q1qivkzlcy5ylq7z4n3rqm5x97i369rfnybsb55gpqqi9"; depends=[]; }; - ELMER_data = derive2 { name="ELMER.data"; version="2.16.0"; sha256="0w0zbj4fd1wkrqz7xrm3jqdhf35dbyybx71b595rcblx1qw9q4k7"; depends=[GenomicRanges]; }; - EatonEtAlChIPseq = derive2 { name="EatonEtAlChIPseq"; version="0.30.0"; sha256="1s1m9r34qhsy33cl7gl6yk9rpd4k6ms25mnd5dfdkabpx537sa7c"; depends=[GenomicRanges rtracklayer ShortRead]; }; - FANTOM3and4CAGE = derive2 { name="FANTOM3and4CAGE"; version="1.28.0"; sha256="1zpq5gnhqpbf6wm7s4kijjd64sf81i38n4sjq7sk7f5blijl64gi"; depends=[]; }; - FIs = derive2 { name="FIs"; version="1.20.0"; sha256="109wp4yz37j43xas5dh1mcyz8zhvchrla7lhkvpy4jyxbk2z3pvi"; depends=[]; }; - FieldEffectCrc = derive2 { name="FieldEffectCrc"; version="1.2.0"; sha256="04gi5rqbz3k1v8cl8kfhx1jmby6dk8qhkwdpfasyxm7xd1ific78"; depends=[AnnotationHub BiocStyle DESeq2 ExperimentHub RUnit SummarizedExperiment]; }; - Fletcher2013a = derive2 { name="Fletcher2013a"; version="1.28.0"; sha256="1sg2ljgpnghcf1lhpfs5qypv44pv5fqg6b0j98n5mn4sxyrr7ckl"; depends=[Biobase gplots limma VennDiagram]; }; - Fletcher2013b = derive2 { name="Fletcher2013b"; version="1.28.0"; sha256="0i5k2z2aggicq3kbjyk8qcg876slfk1157vw3ld6vhxcfr037dj1"; depends=[Fletcher2013a igraph RColorBrewer RedeR RTN]; }; - FlowSorted_Blood_450k = derive2 { name="FlowSorted.Blood.450k"; version="1.30.0"; sha256="0cxxcsxczf01wn8qhbd1agzfw9ga8jkqwpbg06cyhpa9q7ljnz8p"; depends=[minfi]; }; - FlowSorted_Blood_EPIC = derive2 { name="FlowSorted.Blood.EPIC"; version="1.10.1"; sha256="1cycd37hqqpnx66b6hbl2c75k4ychc92r7w7ib5dxc458n21wyby"; depends=[ExperimentHub genefilter IlluminaHumanMethylationEPICanno_ilm10b4_hg19 minfi nlme quadprog S4Vectors SummarizedExperiment]; }; - FlowSorted_CordBlood_450k = derive2 { name="FlowSorted.CordBlood.450k"; version="1.20.0"; sha256="0456w9x8r8z4g549n5znzd4cgbfkg6n6i3wkiwarz7mncgz6hfla"; depends=[minfi]; }; - FlowSorted_CordBloodCombined_450k = derive2 { name="FlowSorted.CordBloodCombined.450k"; version="1.8.0"; sha256="07bzpcm8bwj61jxr09p11d6f595r0z5b0yr04wq85pgjyrhqvixp"; depends=[ExperimentHub FlowSorted_Blood_EPIC IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 minfi SummarizedExperiment]; }; - FlowSorted_CordBloodNorway_450k = derive2 { name="FlowSorted.CordBloodNorway.450k"; version="1.18.0"; sha256="0gg6prd8jh7a84nlv9d60rrjxhdwv93j1kbsvwwp4bw2mpd54r1m"; depends=[minfi]; }; - FlowSorted_DLPFC_450k = derive2 { name="FlowSorted.DLPFC.450k"; version="1.28.0"; sha256="0m9jgiwcysk3rv3wr4m887lzjlqdmn78nzr25x4qi4n2anbl4l37"; depends=[minfi]; }; - GIGSEAdata = derive2 { name="GIGSEAdata"; version="1.10.0"; sha256="14h6j8g01ss9jrh5bllwly8ck115hazl89xb7n9agsyn5ary13zb"; depends=[]; }; - GSBenchMark = derive2 { name="GSBenchMark"; version="1.12.0"; sha256="08d4qk1qsimqx1m4dh4cl0m73lf8wpnr9fnx1r5mk0znq2rvr621"; depends=[]; }; - GSE13015 = derive2 { name="GSE13015"; version="1.0.0"; sha256="05jm20xga65lc0qf61yv82k18vxxw95s2jmfvm1ibxhcg0a1p2kp"; depends=[Biobase GEOquery preprocessCore SummarizedExperiment]; }; - GSE62944 = derive2 { name="GSE62944"; version="1.20.0"; sha256="0b9vjdal8bp7qr9wqy163idw2lijwir3wnhdaalyfag9pmml5r3v"; depends=[Biobase GEOquery]; }; - GSVAdata = derive2 { name="GSVAdata"; version="1.28.0"; sha256="1qv794jnrb48c1ad2wc8kxs9qzjj8k8dy3h2khxrhmc3zw0npawx"; depends=[Biobase GSEABase hgu95a_db]; }; - GWASdata = derive2 { name="GWASdata"; version="1.30.0"; sha256="17lqa6k4qj5j7afbh2fnllpqbmzxh9avqh0pg3lh0cxmpyizdkap"; depends=[GWASTools]; }; - GenomicDistributionsData = derive2 { name="GenomicDistributionsData"; version="1.0.0"; sha256="1jn7aixf3by1ygd5yhqw68r6d30zj5y2rr6dpj0wmgpp0jlnxrsw"; depends=[AnnotationFilter AnnotationHub BSgenome data_table ensembldb ExperimentHub GenomeInfoDb GenomicFeatures GenomicRanges]; }; - GeuvadisTranscriptExpr = derive2 { name="GeuvadisTranscriptExpr"; version="1.20.0"; sha256="1wk7hx6x0501k0ld2cnjf5mvjw8kf8vr23fwrfxwi2i2l3ff1pg8"; depends=[]; }; - HCAData = derive2 { name="HCAData"; version="1.8.0"; sha256="11dwnl66kyhmc9y81h8bh4pvcfa75wkhqkkisl2xm4f55ddlzlm8"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; - HD2013SGI = derive2 { name="HD2013SGI"; version="1.32.0"; sha256="1zb3vx7f5zs6lxlhappiiw5cgl0adiy69d280cgqph7v16fizz9f"; depends=[EBImage geneplotter gplots limma LSD RColorBrewer splots vcd]; }; - HDCytoData = derive2 { name="HDCytoData"; version="1.12.0"; sha256="1l03n92i4jdfk73aw39750vc1p7x1ikl8z49v8zdg3pmk575yzw7"; depends=[ExperimentHub flowCore SummarizedExperiment]; }; - HEEBOdata = derive2 { name="HEEBOdata"; version="1.30.0"; sha256="1458b5dzdm1mq2hjblwkzy37s2yh1p3w68ya89ir60vyvzbss1kg"; depends=[]; }; - HIVcDNAvantWout03 = derive2 { name="HIVcDNAvantWout03"; version="1.32.0"; sha256="0r62bfsamh1i200r36a0dq1lw7p92l6h8mig8g9z3m2382cyaqch"; depends=[]; }; - HMP16SData = derive2 { name="HMP16SData"; version="1.12.0"; sha256="03lr3gqshifa75xwmlbcpllplg2vjdxwbb24ycrzwjjgg14gcynq"; depends=[AnnotationHub assertthat dplyr ExperimentHub kableExtra knitr magrittr readr S4Vectors stringr SummarizedExperiment tibble]; }; - HMP2Data = derive2 { name="HMP2Data"; version="1.6.0"; sha256="03dgji3x3iczdig8hvmgfhqhynkdj6nc613d7n7lmzn6flwfyx0k"; depends=[AnnotationHub assertthat data_table dplyr ExperimentHub kableExtra knitr magrittr MultiAssayExperiment phyloseq readr S4Vectors SummarizedExperiment]; }; - HSMMSingleCell = derive2 { name="HSMMSingleCell"; version="1.12.0"; sha256="1mrwqgx97bhff0cfdp216f2x77fid319ykk47yl4z53lmbdkd0iy"; depends=[]; }; - HarmanData = derive2 { name="HarmanData"; version="1.20.0"; sha256="15x50q5k72djhgdn53x9ch37b8mnaz7x9ps8rg29znfx0ckb6i7x"; depends=[]; }; - HarmonizedTCGAData = derive2 { name="HarmonizedTCGAData"; version="1.14.0"; sha256="0r8jawshhq3jb3fx4rvxbvbgj5xgh4cffdlyf5rcr3q40xb9rbzj"; depends=[ExperimentHub]; }; - HelloRangesData = derive2 { name="HelloRangesData"; version="1.18.0"; sha256="1bcrzwakrc90d2q3hc20bqjqr9ssd2fxr1all7hfi3mx6fk9mi80"; depends=[]; }; - HiCDataHumanIMR90 = derive2 { name="HiCDataHumanIMR90"; version="1.12.0"; sha256="1nxpdj7bzr09y4gsj8a3mkbj36z8szkg15wxs045hgg2xyik2c82"; depends=[]; }; - HiCDataLymphoblast = derive2 { name="HiCDataLymphoblast"; version="1.28.0"; sha256="12rmw0mv43w3kxc5h2d1np7ix9nmvw85lp5bc8phrd78nsbfpkyy"; depends=[]; }; - HighlyReplicatedRNASeq = derive2 { name="HighlyReplicatedRNASeq"; version="1.4.0"; sha256="0cg1f1wkhr5ndd6hm9hhs3q4jx345a93zqylvv3casrzjcz0zp77"; depends=[ExperimentHub S4Vectors SummarizedExperiment]; }; - Hiiragi2013 = derive2 { name="Hiiragi2013"; version="1.28.0"; sha256="1257dq4kfa3sdiz3lw6icvfi0q3y6k12cy1l4j0vgq3mcxw6dha2"; depends=[affy Biobase boot clue cluster genefilter geneplotter gplots gtools KEGGREST lattice latticeExtra MASS mouse4302_db RColorBrewer xtable]; }; - HumanAffyData = derive2 { name="HumanAffyData"; version="1.18.0"; sha256="1c4kik10klfmvj5rc95ldyn58ara25w6bw5ymmgvympsql2nbj2v"; depends=[Biobase ExperimentHub]; }; - IHWpaper = derive2 { name="IHWpaper"; version="1.20.0"; sha256="0n4l01r8pmsyfi2dc7nrc4gx7r9y8lsbi2g0nifgdkj6cj2q0k4f"; depends=[Biobase BiocGenerics BiocParallel cowplot DESeq2 dplyr fdrtool genefilter ggplot2 IHW qvalue Rcpp SummarizedExperiment]; }; - ITALICSData = derive2 { name="ITALICSData"; version="2.30.0"; sha256="1a8a8pb4fpzkb16rx23shx0zqqxggp5vk7dacy69z29cwih6nxc0"; depends=[]; }; - Illumina450ProbeVariants_db = derive2 { name="Illumina450ProbeVariants.db"; version="1.28.0"; sha256="0f19gy2k1kx5cv4glxgzn9sns465m8ml5wlsdvgmhwhbvx23qybc"; depends=[]; }; - IlluminaDataTestFiles = derive2 { name="IlluminaDataTestFiles"; version="1.30.0"; sha256="0f0h82yp3l1fglrqd2z1k2n5sc706ivn7n7sacx9s31ybsym2bmm"; depends=[]; }; - Iyer517 = derive2 { name="Iyer517"; version="1.34.0"; sha256="0nsfz0k8ib6033g8v4lk6iwfdjdsm1jxq62s1k6sviqa0sgfdryz"; depends=[Biobase]; }; - JASPAR2014 = derive2 { name="JASPAR2014"; version="1.28.0"; sha256="031d4i9agb7kpa0cmqkc0fjhxlpkm7ar674pf1lawq5pyp2vb5c6"; depends=[Biostrings]; }; - JASPAR2016 = derive2 { name="JASPAR2016"; version="1.20.0"; sha256="1m6h5w18rm6b4jhay03ra4h5vq0fjb8zwbz5d30sfjlxxn7d0hmh"; depends=[]; }; - KEGGandMetacoreDzPathwaysGEO = derive2 { name="KEGGandMetacoreDzPathwaysGEO"; version="1.12.0"; sha256="00j31za752mwcz75wgd2fv8pnrpmvjlhw2x59vscn0i9vnmf2wx0"; depends=[Biobase BiocGenerics]; }; - KEGGdzPathwaysGEO = derive2 { name="KEGGdzPathwaysGEO"; version="1.30.0"; sha256="1lgv2ykqg4zr05yhihn01y1py86f7k2n0zih8pyjjd59jmsvinlk"; depends=[Biobase BiocGenerics]; }; - KOdata = derive2 { name="KOdata"; version="1.18.0"; sha256="1qmrh5p83kcy8f5n6bf4lpj26mw4mxw2zj49bklfdcbpkshyfr5y"; depends=[]; }; - LRcellTypeMarkers = derive2 { name="LRcellTypeMarkers"; version="1.0.0"; sha256="0h3x2zppfqwa9d2s7zs1b04gm9hl09mf68gy3g9by9z3g8p9fs97"; depends=[ExperimentHub]; }; - LiebermanAidenHiC2009 = derive2 { name="LiebermanAidenHiC2009"; version="0.30.0"; sha256="08g6jdivnmigcn6gy6088g9mm0xrvzwb2y6ll389x7z4f55nlsyg"; depends=[IRanges KernSmooth]; }; - ListerEtAlBSseq = derive2 { name="ListerEtAlBSseq"; version="1.24.0"; sha256="0jpdqfp7n1f8iar54nv4vlssm25wbpdk2r0krax6vg6cfiy1vp56"; depends=[methylPipe]; }; - LungCancerACvsSCCGEO = derive2 { name="LungCancerACvsSCCGEO"; version="1.28.0"; sha256="1isj8mfivaaddzv4bwmzj6rv4mjn9ng8yx200xlyhlyarasdpg29"; depends=[]; }; - LungCancerLines = derive2 { name="LungCancerLines"; version="0.30.0"; sha256="1cb7hyvf40yzaa510024jr9awqhn6cgz2cynqzc0kh8l84dcndsn"; depends=[Rsamtools]; }; - M3DExampleData = derive2 { name="M3DExampleData"; version="1.18.0"; sha256="09a2yix4pb2wjwdz23swwm7j1k4l1n71w59j61ykd37r2qnck2a1"; depends=[]; }; - MACSdata = derive2 { name="MACSdata"; version="1.0.0"; sha256="0ghplkjm4cmviajcmvjphyqycd84fqqpzj6jzpfnwv8znamjfwld"; depends=[]; }; - MAQCsubset = derive2 { name="MAQCsubset"; version="1.30.0"; sha256="1sq3v1sb0snlmlks0awlksqx09xjz86affm76wi1hhcpga5r8w9g"; depends=[affy Biobase lumi]; }; - MAQCsubsetAFX = derive2 { name="MAQCsubsetAFX"; version="1.30.0"; sha256="14mwg96g7aza81vc3hpmb41scmygl8vnsi6s8p48c8v92106asmb"; depends=[affy Biobase]; }; - MAQCsubsetILM = derive2 { name="MAQCsubsetILM"; version="1.30.0"; sha256="0imhd75bwjyxgdbp9da0b2gqclwww7xrsbgqqpa148997il9nfrf"; depends=[Biobase lumi]; }; - MEDIPSData = derive2 { name="MEDIPSData"; version="1.28.0"; sha256="1qcx5aj8sw5rlfxnqgdwvx2ds2dz6vg51ci97nbxx4af67xvahin"; depends=[]; }; - MEEBOdata = derive2 { name="MEEBOdata"; version="1.30.0"; sha256="07wq7gslhrmp0n1hii3fyni63rd0cnry0rqrya6ciqa06wnrnnaj"; depends=[]; }; - MIGSAdata = derive2 { name="MIGSAdata"; version="1.16.0"; sha256="0hhs0kmcsxh80yvs0vgs41hgvjkcrjr7v56fqyvxgd43r944q156"; depends=[]; }; - MMAPPR2data = derive2 { name="MMAPPR2data"; version="1.6.0"; sha256="173hi1s6g3n6a8ykw6lll2sc7rph1l7pfw4hyssh6fyn5pp0jxi5"; depends=[Rsamtools]; }; - MMDiffBamSubset = derive2 { name="MMDiffBamSubset"; version="1.28.0"; sha256="1qa8w99n53k8cvz2iv98q3jcbswdngkjj3crvv838fdxngm04l2v"; depends=[]; }; - MOFAdata = derive2 { name="MOFAdata"; version="1.8.0"; sha256="1imva6rlh781yd0ngby8qil0pc15i1pajg2fxwf8z6m0bwbxmqwz"; depends=[]; }; - MSMB = derive2 { name="MSMB"; version="1.10.0"; sha256="0pbfix742qslxwvpk0ibvhzmbbshz364p2kvj58hnd06brx2glxn"; depends=[]; }; - MSstatsBioData = derive2 { name="MSstatsBioData"; version="1.13.0"; sha256="1jzypgfmd6d0fdj9ycp4jwihjpxyinr5kwi2x2dg2z6hvxx97gb8"; depends=[]; }; - MUGAExampleData = derive2 { name="MUGAExampleData"; version="1.12.0"; sha256="0v0k6s4jyk3z1v3yrin00fdchid68p0x9knvgr92mwdjj7yywd8h"; depends=[]; }; - MetaGxBreast = derive2 { name="MetaGxBreast"; version="1.12.0"; sha256="17rcxfsjxbq50flh6w9i01abl6iw9wp35r9qibqkdm9v3pswvkzc"; depends=[AnnotationHub Biobase ExperimentHub impute lattice SummarizedExperiment]; }; - MetaGxOvarian = derive2 { name="MetaGxOvarian"; version="1.12.0"; sha256="1iww2z2p2ycc2mjpz9m1kn80jhwf8z6vsmv01n3143xg2y9vyvww"; depends=[AnnotationHub Biobase ExperimentHub impute lattice SummarizedExperiment]; }; - MetaGxPancreas = derive2 { name="MetaGxPancreas"; version="1.12.1"; sha256="1f4b10bzd7q3n41ihh7rhfwa1i4q8bmikd3h1kb0vjdpddyavi0i"; depends=[AnnotationHub ExperimentHub impute S4Vectors SummarizedExperiment]; }; - MethylAidData = derive2 { name="MethylAidData"; version="1.24.0"; sha256="164p88vmwdhw4x1213qq17szrhh3x367d614l0dq1906yyqmpprm"; depends=[MethylAid]; }; - MethylSeqData = derive2 { name="MethylSeqData"; version="1.2.0"; sha256="148yjqgkv43906cww9qmjlmi22mklabxbkr9pdg9phq6lrvwj335"; depends=[ExperimentHub GenomeInfoDb GenomicRanges HDF5Array IRanges rhdf5 S4Vectors SummarizedExperiment]; }; - MouseGastrulationData = derive2 { name="MouseGastrulationData"; version="1.6.0"; sha256="1ljmbn3ax33npvv440ifkm7x9wg9jmakixr5hxx9h6v1q96jnrkb"; depends=[BiocGenerics BumpyMatrix ExperimentHub S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; - MouseThymusAgeing = derive2 { name="MouseThymusAgeing"; version="1.0.0"; sha256="1r3f3nidgnm86f350d8yff82z4aibspkv0qyvx5mmnna89694nib"; depends=[BiocGenerics ExperimentHub S4Vectors SingleCellExperiment SummarizedExperiment]; }; - NCIgraphData = derive2 { name="NCIgraphData"; version="1.28.0"; sha256="08f400dmbbccgrgzib6808q6543bq9r2sji5kpj2sra671kfb1f8"; depends=[]; }; - NGScopyData = derive2 { name="NGScopyData"; version="1.12.0"; sha256="1xmqrwd8g71j6zv8nqn1c185qplbllj7y087hix15ippyvz5986k"; depends=[]; }; - NanoporeRNASeq = derive2 { name="NanoporeRNASeq"; version="1.2.1"; sha256="1jrr0a1kgsb39b8bxjz15yhx5gzq29076pxz2dcnijvlhzhxlby5"; depends=[ExperimentHub]; }; - NestLink = derive2 { name="NestLink"; version="1.8.0"; sha256="1g3klrwjzfgm6yh5awfrp07nf8kixlnl7hvcr3yxxhqvqxfqyixr"; depends=[AnnotationHub Biostrings ExperimentHub gplots protViz ShortRead]; }; - Neve2006 = derive2 { name="Neve2006"; version="0.30.0"; sha256="1ckrkakidfmm0aj3xs2v6az7129rqyz6s8yzqrm03w0d4kpzlan9"; depends=[annotate Biobase hgu133a_db]; }; - OMICsPCAdata = derive2 { name="OMICsPCAdata"; version="1.10.0"; sha256="0glq1y90kchcagbn3yzwymvqh2c4f5b0d7w193k8drx2lh09fwj5"; depends=[MultiAssayExperiment]; }; - ObMiTi = derive2 { name="ObMiTi"; version="1.0.0"; sha256="0vl2i7js6z6jhz2lm9s78lnz7r2p2pk40w1pmg6vqk0lbp50fwj0"; depends=[ExperimentHub SummarizedExperiment]; }; - OnassisJavaLibs = derive2 { name="OnassisJavaLibs"; version="1.14.0"; sha256="01k050znpzf49dsim85q6rc05ln7qlxpy3pw22ax27h46vp6xvv8"; depends=[rJava]; }; - PCHiCdata = derive2 { name="PCHiCdata"; version="1.20.0"; sha256="013sd0mqphpmlfbxsrrqq4vvbq8w66v10mngaw7fyc99h5l33ah3"; depends=[Chicago]; }; - PREDAsampledata = derive2 { name="PREDAsampledata"; version="0.32.0"; sha256="1hnnacsyas98jfnps6cfid3gdqqx6lc9rpw8adfyf0b8v3bdn4sh"; depends=[affy annotate Biobase PREDA]; }; - PWMEnrich_Dmelanogaster_background = derive2 { name="PWMEnrich.Dmelanogaster.background"; version="4.26.1"; sha256="0s9a6qixfq2jmx5nv7q8pa6c9mlscapkjh069jf1b37891shwl32"; depends=[PWMEnrich]; }; - PWMEnrich_Hsapiens_background = derive2 { name="PWMEnrich.Hsapiens.background"; version="4.26.1"; sha256="12bnmdlw4whqls4ply5jhkg0aq6dam4160xl7xaabhgb6wiz3m92"; depends=[PWMEnrich]; }; - PWMEnrich_Mmusculus_background = derive2 { name="PWMEnrich.Mmusculus.background"; version="4.26.1"; sha256="13822jxvc846s7gmzd47vlza2pz061954w44pspmxcjrq6r2xvy0"; depends=[PWMEnrich]; }; - PasillaTranscriptExpr = derive2 { name="PasillaTranscriptExpr"; version="1.20.0"; sha256="0mcrfj80nb5ipi58g9a3dgka3sj6wrrc9ax93mqw584cqs788n4w"; depends=[]; }; - PathNetData = derive2 { name="PathNetData"; version="1.28.0"; sha256="1y1ln0zbnjh4kmbhphnvcifrw1lazrc4kci6gi07mwny3vpac6f4"; depends=[]; }; - PepsNMRData = derive2 { name="PepsNMRData"; version="1.10.0"; sha256="0bms0zin8p5znwpwq5ipcpj03a71zc9ihw9h5svqkx0hqax06x1k"; depends=[]; }; - PhyloProfileData = derive2 { name="PhyloProfileData"; version="1.6.1"; sha256="14427azqb8cra7fa33fx69qkk5xgal71hdhnyya0lls3cpxv91ca"; depends=[BiocStyle Biostrings ExperimentHub]; }; - ProData = derive2 { name="ProData"; version="1.30.0"; sha256="0gh1f5smanp0wg3z4bc6rxqkvhi11jm3xxhyz3xikjy40qqnykjp"; depends=[Biobase]; }; - PtH2O2lipids = derive2 { name="PtH2O2lipids"; version="1.18.0"; sha256="0vv5iph4qcci1zzl7946l47wgydfxv1nxqkqljx1bzp8vn64fbh1"; depends=[CAMERA LOBSTAHS xcms]; }; - QDNAseq_hg19 = derive2 { name="QDNAseq.hg19"; version="1.22.0"; sha256="0r98853g1ph1by25fna8pi4hrhdz9xvkfq3bvx5fwwbg5hmc8wnc"; depends=[QDNAseq]; }; - QDNAseq_mm10 = derive2 { name="QDNAseq.mm10"; version="1.22.0"; sha256="0sk90ipmgrn63f8c5sbmnafzwlra36adslg6si0dmrgkvp3disdq"; depends=[QDNAseq]; }; - QUBICdata = derive2 { name="QUBICdata"; version="1.20.0"; sha256="1665dymyglwyz7631c1qfq4wnmg5zm2q7akd36w7fhjkxcdhmj29"; depends=[]; }; - RGMQLlib = derive2 { name="RGMQLlib"; version="1.12.0"; sha256="10k7jmhgv4asmidb82a6lzmhlxqvh9fr6w1ipsif6ccaj626m1nf"; depends=[]; }; - RITANdata = derive2 { name="RITANdata"; version="1.16.0"; sha256="11cixvs9rrhklly36v93kx07wv6nknjdn0h61na0jrjdjyc1s4q0"; depends=[]; }; - RMassBankData = derive2 { name="RMassBankData"; version="1.30.0"; sha256="0xiaa4gkrrazzsrg1czd9kslrqayf9qlq8a9kp1mx67whb2wfigw"; depends=[]; }; - RNASeqRData = derive2 { name="RNASeqRData"; version="1.10.0"; sha256="046a0r4nqsh1kl88fw079ppavs3nss050mnr3xvg2256b4pflhd4"; depends=[]; }; - RNAinteractMAPK = derive2 { name="RNAinteractMAPK"; version="1.30.0"; sha256="18bwr7r7xdp6ygabsvgp44d8rdb1rrds05in4rj84lm34rjzcwig"; depends=[Biobase fields gdata genefilter lattice MASS RNAinteract sparseLDA]; }; - RNAmodR_Data = derive2 { name="RNAmodR.Data"; version="1.6.0"; sha256="15pnk9c6b3zjr1hck62z0ljpdb7y64kzh0xmvanlg5lw38spihn9"; depends=[ExperimentHub ExperimentHubData]; }; - RNAseqData_HNRNPC_bam_chr14 = derive2 { name="RNAseqData.HNRNPC.bam.chr14"; version="0.30.0"; sha256="05swvszzcjr89d30v59yqp3vm1n6qiy36497ppvhcnwz471as96r"; depends=[]; }; - RRBSdata = derive2 { name="RRBSdata"; version="1.12.0"; sha256="0ikjpvndwwin88qwhnrmfk9bcj50jfyzl0am30269ihbhb5pdrjh"; depends=[BiSeq]; }; - RTCGA_CNV = derive2 { name="RTCGA.CNV"; version="1.20.0"; sha256="0fg1faahvyl1fcf4baic8b6irf7gzg2xmckmap0c6026wvl930n1"; depends=[RTCGA]; }; - RTCGA_PANCAN12 = derive2 { name="RTCGA.PANCAN12"; version="1.20.0"; sha256="1h1a1dqh701nwfdkifv1lxnfjkzszdllhpgl7kbhdzwwj3n35qwk"; depends=[RTCGA]; }; - RTCGA_RPPA = derive2 { name="RTCGA.RPPA"; version="1.20.0"; sha256="0833kjzclk5ddmgsm0hcjjl9n1l9m4vf89h1snh0igqg73z7mvrs"; depends=[RTCGA]; }; - RTCGA_clinical = derive2 { name="RTCGA.clinical"; version="20151101.22.0"; sha256="1paldg8wim6d4xvmzxyickzm28haz5z6h9g7k5h6s9wiqw3r0q36"; depends=[RTCGA]; }; - RTCGA_mRNA = derive2 { name="RTCGA.mRNA"; version="1.20.0"; sha256="07jam3krlwdmsl5xk45qrv60gmkq1p5ra9jxrzi9iyf604x7591f"; depends=[RTCGA]; }; - RTCGA_methylation = derive2 { name="RTCGA.methylation"; version="1.20.0"; sha256="02w438dlsvdzpa4myywhwzsczhw86lx43mw3w3m2rwgakfv1ayan"; depends=[RTCGA]; }; - RTCGA_miRNASeq = derive2 { name="RTCGA.miRNASeq"; version="1.20.0"; sha256="1w4j4kh2c545a0jl0mdqn2fj3nspmalgf9p8693nayjgr4a5ryx2"; depends=[RTCGA]; }; - RTCGA_mutations = derive2 { name="RTCGA.mutations"; version="20151101.22.0"; sha256="015qc579kn7640cc1p09ci67xn3kg3q9p783h949z0fdqfl90ry8"; depends=[RTCGA]; }; - RTCGA_rnaseq = derive2 { name="RTCGA.rnaseq"; version="20151101.22.0"; sha256="1mz6c9s2q1zp8i1234svca4133q2l884p4qr7yg512qyrn5jklrh"; depends=[RTCGA]; }; - RUVnormalizeData = derive2 { name="RUVnormalizeData"; version="1.12.0"; sha256="1mx8f9vb8qyrag59mhsria193pgmk7m56b4z53lsn5vxmp42f4yn"; depends=[Biobase]; }; - RcisTarget_hg19_motifDBs_cisbpOnly_500bp = derive2 { name="RcisTarget.hg19.motifDBs.cisbpOnly.500bp"; version="1.12.0"; sha256="1bv3z1g2xabdh83zk5xa9h5xrgv4cf28di0syv63xgndqsn70vqv"; depends=[data_table]; }; - ReactomeGSA_data = derive2 { name="ReactomeGSA.data"; version="1.6.0"; sha256="0n1p4svxhddvb4m83v9nhdgwafa0n392625kaqvz2bby87hsnz4w"; depends=[edgeR limma ReactomeGSA Seurat]; }; - RegParallel = derive2 { name="RegParallel"; version="1.10.0"; sha256="02zk2sxikyd3mi54p51dwqkz73rsnb854rg0w73kc041kjr6cs4r"; depends=[arm data_table doParallel foreach iterators stringr survival]; }; - RforProteomics = derive2 { name="RforProteomics"; version="1.30.1"; sha256="1ld4lkalpywfll2zw93flgnvbhr0djiswd7bqx1ahsy95920v75m"; depends=[BiocManager biocViews MSnbase R_utils]; }; - RnBeads_hg19 = derive2 { name="RnBeads.hg19"; version="1.24.0"; sha256="1wwbabqd3d5lrx82qaxpc2qyxx070ir31wjjnfan0fxdy3z53a1g"; depends=[GenomicRanges]; }; - RnBeads_hg38 = derive2 { name="RnBeads.hg38"; version="1.24.0"; sha256="0x6hvz9hk6ynwkak7rzi60lm55ksq1kh4098g6xgq0n3zvgvmhw8"; depends=[GenomicRanges]; }; - RnBeads_mm10 = derive2 { name="RnBeads.mm10"; version="2.0.0"; sha256="0yyyv67cg50r202x5r9i9wasw4m4gqaqjaqgy0iv6v9z5hzsi5v1"; depends=[GenomicRanges]; }; - RnBeads_mm9 = derive2 { name="RnBeads.mm9"; version="1.24.0"; sha256="1wcz9jp9z2vjdmqim693ij0pgz5c7lykd2gnqpwbg23gpr1a4vlz"; depends=[GenomicRanges]; }; - RnBeads_rn5 = derive2 { name="RnBeads.rn5"; version="1.24.0"; sha256="1vdlhzwxfb2hv20bzxvnkrgpb3yi36459yjyr97375fh3lxaqw70"; depends=[GenomicRanges]; }; - RnaSeqSampleSizeData = derive2 { name="RnaSeqSampleSizeData"; version="1.24.0"; sha256="0sajb3m10jlq9yf364ngzmzvj28rfrrbd5jwahajigln6mbsbzd7"; depends=[edgeR]; }; - SBGNview_data = derive2 { name="SBGNview.data"; version="1.6.0"; sha256="1mxn6ydd5zm4gi6dqccfify82llhc85841gbp4hgy926zk5pg2f0"; depends=[bookdown knitr rmarkdown]; }; - SCATEData = derive2 { name="SCATEData"; version="1.2.0"; sha256="0ys32g82m90lvgqrz3ryy2az6hszxv8fj2i9mnzdyp0bzrvs0pbl"; depends=[ExperimentHub GenomicAlignments GenomicRanges]; }; - SCLCBam = derive2 { name="SCLCBam"; version="1.24.0"; sha256="12yq6k20f8l92l9apij04af3xzx6i9w4pkjbj84gxi17q5p0h5za"; depends=[]; }; - SNAData = derive2 { name="SNAData"; version="1.38.0"; sha256="0scvy2fxzgnbq3lpqq9vhcl0ihwkf1lwk2iijgw7mvbbspq9d28b"; depends=[graph]; }; - SNAGEEdata = derive2 { name="SNAGEEdata"; version="1.28.0"; sha256="0qqqf1qj10m3l17yj6cqrpafngnzzpjl3hsa8qs9hq1x2azvg6p8"; depends=[]; }; - SNPhoodData = derive2 { name="SNPhoodData"; version="1.22.0"; sha256="1a7gcvlc1axg9m1gmg0wm6yhgyhasfzcmlilwydpkjbn9j3fs8kp"; depends=[]; }; - STexampleData = derive2 { name="STexampleData"; version="1.0.8"; sha256="07flhr3a0r6h9xrc91pqlaq9bgx7vl4b8d9l8kb5gkcwr7m0qls3"; depends=[ExperimentHub SpatialExperiment]; }; - SVM2CRMdata = derive2 { name="SVM2CRMdata"; version="1.24.0"; sha256="1v8q5mpplkdi8hz8i89fx5gzzhbnw32nw3vm7qv3rb84v4vs57pv"; depends=[]; }; - SimBenchData = derive2 { name="SimBenchData"; version="1.0.0"; sha256="123fi1d0y55z92mzprjizh6vgrhv0mlmm2xk9xxb6fm0z6w293i0"; depends=[ExperimentHub S4Vectors]; }; - Single_mTEC_Transcriptomes = derive2 { name="Single.mTEC.Transcriptomes"; version="1.20.0"; sha256="0y9axq72ssxfirfwmi6ir8z241nas3maz82m75smhj1yq7qn73yk"; depends=[]; }; - SingleCellMultiModal = derive2 { name="SingleCellMultiModal"; version="1.4.1"; sha256="01f6ddz8x3w19hq36ym0dm4afnq94dcr68kvl5hrglarqdzlikf7"; depends=[AnnotationHub BiocFileCache BiocGenerics ExperimentHub HDF5Array Matrix MultiAssayExperiment S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; - SingleMoleculeFootprintingData = derive2 { name="SingleMoleculeFootprintingData"; version="1.0.0"; sha256="0kzs97y25sr2527pa2kqddkz0wckb727gnczipxjspmilvnp8j2z"; depends=[ExperimentHub]; }; - SomatiCAData = derive2 { name="SomatiCAData"; version="1.30.0"; sha256="0a4wzfss5habxn1mdwas699ff8prpylj2ybgb5dd7691zjygx07f"; depends=[]; }; - SomaticCancerAlterations = derive2 { name="SomaticCancerAlterations"; version="1.28.0"; sha256="111y36lvd518b7cn4k3025qrq77nh3rks9hz3r11k1af2y9d3p80"; depends=[GenomicRanges IRanges S4Vectors]; }; - SpikeIn = derive2 { name="SpikeIn"; version="1.34.0"; sha256="1bj4h1zjkaabv7d7l67aq58j2v2npwnspa3xg35jxzjqwcd8z459"; depends=[affy]; }; - SpikeInSubset = derive2 { name="SpikeInSubset"; version="1.32.0"; sha256="0kg29bfw144bnzxk81kiw3wfyqkdwaqgr3mqyjb3ag1kqa91rwyf"; depends=[affy Biobase]; }; - TBX20BamSubset = derive2 { name="TBX20BamSubset"; version="1.28.0"; sha256="0yzwyv68495zqg3cjqyxzm6zxprzy3jq6j55m2hp7wwqn1ab0sb1"; depends=[Rsamtools xtable]; }; - TCGAMethylation450k = derive2 { name="TCGAMethylation450k"; version="1.28.0"; sha256="0qh2n7a2lrfr61lag5bshpscm3fqga4gw88zz7lvf9l8lx60fn84"; depends=[]; }; - TCGAWorkflowData = derive2 { name="TCGAWorkflowData"; version="1.16.0"; sha256="06q2d1pba3wixdmdswci8a6my7xkwfkwkm4a5zsvyjsv9ljc20ap"; depends=[SummarizedExperiment]; }; - TCGAbiolinksGUI_data = derive2 { name="TCGAbiolinksGUI.data"; version="1.12.0"; sha256="14j4m7h5sspp6d9dvqqmc8s7av32gsi0c463v9l1jyf33yrakl4y"; depends=[]; }; - TCGAcrcmRNA = derive2 { name="TCGAcrcmRNA"; version="1.12.0"; sha256="1gihnggazbbbg51klciwi41hrv9ygsnlx5pg4m5l21j30g8h6k29"; depends=[Biobase]; }; - TCGAcrcmiRNA = derive2 { name="TCGAcrcmiRNA"; version="1.12.0"; sha256="18lk6qgikk0da6wq370zynqcxx0742ys7qyd855rjjqq6g5bsdzi"; depends=[Biobase]; }; - TENxBUSData = derive2 { name="TENxBUSData"; version="1.6.0"; sha256="1phx64jiqwsv5caphbd3iarng6x6aljicwg0g97jmrd9dwzqz3g7"; depends=[AnnotationHub BiocGenerics ExperimentHub]; }; - TENxBrainData = derive2 { name="TENxBrainData"; version="1.12.0"; sha256="069wcxdwbcxfqy75yibrafqkhgc14yh3fbyn71bgdjpfsi4xrv9r"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; - TENxPBMCData = derive2 { name="TENxPBMCData"; version="1.10.0"; sha256="05srydf84703w54sdirribdl4w2w9n3zmd5rwkv6nd5b9v3zlqzb"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; - TENxVisiumData = derive2 { name="TENxVisiumData"; version="1.0.2"; sha256="1jgk0xzy7gjypfbh0a6xjk34kl97b3i1j1j6f6fqq2d2fgbif2zq"; depends=[ExperimentHub SpatialExperiment]; }; - TMExplorer = derive2 { name="TMExplorer"; version="1.2.1"; sha256="15cfgkxvg53fkbzssmqjy72xbapyh4g2j3vgw1pp48jmm0n17z67"; depends=[BiocFileCache Matrix SingleCellExperiment]; }; - TabulaMurisData = derive2 { name="TabulaMurisData"; version="1.10.0"; sha256="0gna07p2g5jm4c0hypbs2g1gbmvc72xi7y0qiw6jylac1qahnsil"; depends=[ExperimentHub]; }; - TargetScoreData = derive2 { name="TargetScoreData"; version="1.28.0"; sha256="110dlcvwhk7dckca8p3d83p3lz980rxbff585nxxlhy2rjw4m87i"; depends=[]; }; - TargetSearchData = derive2 { name="TargetSearchData"; version="1.30.0"; sha256="01701jcf9yq1fcxjzzgddd3ah2fxd1wafqyyf2h8k2nxg63l4wxb"; depends=[]; }; - TimerQuant = derive2 { name="TimerQuant"; version="1.22.0"; sha256="0nj68i3i6frwwqnfj72gzl2qs5iyp2wwzhn7hqvqw7s3sgl0vxjj"; depends=[deSolve dplyr ggplot2 gridExtra locfit shiny]; }; - VariantToolsData = derive2 { name="VariantToolsData"; version="1.16.0"; sha256="0a4xhvvg5p9v04ry9d70wpnma2b7ba6m04k40phalc2q2l1mgb49"; depends=[BiocGenerics GenomicRanges VariantAnnotation]; }; - WES_1KG_WUGSC = derive2 { name="WES.1KG.WUGSC"; version="1.24.0"; sha256="1j8n8iaxch1cs6g3d9raaziyzvcpbp0am9awrzi8a89zbp8vw5lf"; depends=[]; }; - WGSmapp = derive2 { name="WGSmapp"; version="1.4.0"; sha256="17z3m5m53kdp2w798nh9bl5j5fff4yyfig747s17cvgd1bmcslw6"; depends=[GenomicRanges]; }; - XhybCasneuf = derive2 { name="XhybCasneuf"; version="1.30.0"; sha256="082d3y9x78la6d3ssiahkzzlwx12wir9nvm0g5aj278dfc5z509a"; depends=[affy ath1121501cdf RColorBrewer tinesath1cdf]; }; - adductData = derive2 { name="adductData"; version="1.8.0"; sha256="0g6r5j7j1a0800j5mqv5bxvxd46vankhajjq39wxicw7zynsh57p"; depends=[AnnotationHub ExperimentHub]; }; - affycompData = derive2 { name="affycompData"; version="1.30.0"; sha256="1m3x8v57dfv52q2nvsn8pcb8gsb91gz8w39nkba8hf6nh27c24sc"; depends=[affycomp Biobase]; }; - affydata = derive2 { name="affydata"; version="1.40.0"; sha256="1x06nwnhj9bsbvlp1rzda67cn6g39s16hya7kinqfcllv1m7s0y2"; depends=[affy]; }; - airway = derive2 { name="airway"; version="1.12.0"; sha256="0rfx01gn7nx00yaxx737cxrvk1jncamqg0kxg1idl45p7ws12h2c"; depends=[SummarizedExperiment]; }; - alpineData = derive2 { name="alpineData"; version="1.18.0"; sha256="1j58slk6l4wxkyjm6d4axyp2hn8pivc49y8jx28rng03vxlwm386"; depends=[AnnotationHub ExperimentHub GenomicAlignments]; }; - antiProfilesData = derive2 { name="antiProfilesData"; version="1.28.0"; sha256="0hlyq1403pyin1fs63nplz0c4ppl9aclxbgw67wglwg7nbfiqh68"; depends=[Biobase]; }; - aracne_networks = derive2 { name="aracne.networks"; version="1.18.0"; sha256="19jgjmrnakmbhqaw7ykh8fx75zljdmcjz9nf23py9rs7xh58ykhx"; depends=[viper]; }; - bcellViper = derive2 { name="bcellViper"; version="1.28.0"; sha256="1w4d6xk1npg3h28wp2jn6z4lcwqk8cgiyxpwfzpryg8jx4h434yc"; depends=[Biobase]; }; - beadarrayExampleData = derive2 { name="beadarrayExampleData"; version="1.30.0"; sha256="1vwl6ldd5694h52jvs4827jw4byx6pmf6vlspjxp9xjr7wxn3f8s"; depends=[beadarray Biobase]; }; - benchmarkfdrData2019 = derive2 { name="benchmarkfdrData2019"; version="1.6.0"; sha256="04aj0cqq1l6x353bjcyc5gal27clf3j47bdagrac33p6l1f5n4kw"; depends=[ExperimentHub SummarizedExperiment]; }; - beta7 = derive2 { name="beta7"; version="1.30.0"; sha256="0knqzxbgn0ra6l2k4dwn22wvg8x2zk9skffy0slc34s6g3qryin5"; depends=[marray]; }; - biotmleData = derive2 { name="biotmleData"; version="1.16.0"; sha256="18cvwmi80jh54v40vp9iqas1afc6cqb2v2abinyyxq2mba4afmnd"; depends=[]; }; - biscuiteerData = derive2 { name="biscuiteerData"; version="1.6.0"; sha256="1d7zibjf0qccmdnzdxh7wy1h943yhnbf8zdix72486pvhzm124zj"; depends=[AnnotationHub curl ExperimentHub]; }; - bladderbatch = derive2 { name="bladderbatch"; version="1.30.0"; sha256="0jsxm78cvfbjn1360lhka7nxxiynqsnf1p2r3awgy239z93xyri1"; depends=[Biobase]; }; - blimaTestingData = derive2 { name="blimaTestingData"; version="1.12.0"; sha256="0wwjxhk9k4k5pwrwcmvqycfsl99hx2lwv4nykf48zc5qnbzcpchh"; depends=[]; }; - bodymapRat = derive2 { name="bodymapRat"; version="1.8.0"; sha256="162rn0mi9a0lrljxbb78l2s7n0r3bmq835vwdb8xa2sf6sywni87"; depends=[ExperimentHub SummarizedExperiment]; }; - brainImageRdata = derive2 { name="brainImageRdata"; version="1.10.0"; sha256="088f7rbp7l2914nz2wc5wz89filcwfxjpg8c9f84mvwf7glcg2y9"; depends=[ExperimentHub]; }; - breakpointRdata = derive2 { name="breakpointRdata"; version="1.10.0"; sha256="1siwcllxhk9g3hscn5d01lkla49nny9c778msgv2ybj1lng3l215"; depends=[]; }; - breastCancerMAINZ = derive2 { name="breastCancerMAINZ"; version="1.30.0"; sha256="15ixf8x5k63pjshylbn8jgmx7xyjn0pqpn84615q2vicf136xgs8"; depends=[]; }; - breastCancerNKI = derive2 { name="breastCancerNKI"; version="1.30.0"; sha256="159yhrfsjccz145iddnzc5i87gag2ngy244v77cf73y96xs8985i"; depends=[]; }; - breastCancerTRANSBIG = derive2 { name="breastCancerTRANSBIG"; version="1.30.0"; sha256="0gvfwg27nxk1jslr95fzzi4s3p4s4liyc7a5fyfk33ilqjg7nkc0"; depends=[]; }; - breastCancerUNT = derive2 { name="breastCancerUNT"; version="1.30.0"; sha256="174nq00w753clhxga5azjkllj1mm10ygig7afn7lhy2xyph30aa5"; depends=[]; }; - breastCancerUPP = derive2 { name="breastCancerUPP"; version="1.30.0"; sha256="1375bwvp2p436p4d7j1y93q8g7rw62160ks711f3l54xxg78q2md"; depends=[]; }; - breastCancerVDX = derive2 { name="breastCancerVDX"; version="1.30.0"; sha256="0skv3m5wrhhz6k9k6nxjdji9kwqkwjbb2y9q1ff6x289ivbj4w2a"; depends=[]; }; - brgedata = derive2 { name="brgedata"; version="1.14.0"; sha256="1w0ihaqdrbvgk13sf3c89bb04wdljckaw1iqx521wcisza06agzi"; depends=[Biobase SummarizedExperiment]; }; - bronchialIL13 = derive2 { name="bronchialIL13"; version="1.30.0"; sha256="1zfwxja77hl4va6m3d377cfvlrmpr4q13n0sp9sm4g82qzhvw4v7"; depends=[affy]; }; - bsseqData = derive2 { name="bsseqData"; version="0.30.0"; sha256="160kw64mixan2warsb9zqdmabsjn07fgc5bgw0jb2chl616x4265"; depends=[bsseq]; }; - cMap2data = derive2 { name="cMap2data"; version="1.28.0"; sha256="0ismi8irqab4a4afg7cil5xw8i49g89sc60z2nf63krsg0pgw0cp"; depends=[]; }; - cancerdata = derive2 { name="cancerdata"; version="1.30.0"; sha256="1zrjwb1bqivlhjfkzvb96i3z4c92qh1j4fwiq0z0dmzvcz73svw4"; depends=[Biobase]; }; - ccTutorial = derive2 { name="ccTutorial"; version="1.30.0"; sha256="11lzf41jwb6x65i3hlcazhf1n1yskf1lxv439521sn9b05dgwvyb"; depends=[affy Biobase Ringo topGO]; }; - ccdata = derive2 { name="ccdata"; version="1.18.0"; sha256="0vganjx24b58cs4r9ixsik7rz328r31vwzcbvscpa1i3awhcf96y"; depends=[]; }; - celarefData = derive2 { name="celarefData"; version="1.10.0"; sha256="063ipjw0giy63jrm518psp0wx61hlpwdcm2b8c9546zmx9v2ig0r"; depends=[]; }; - celldex = derive2 { name="celldex"; version="1.2.0"; sha256="0vqfjlmw5gvygl3km4cpdjaklghf0a7vl23z4qgp8vsn00zn4a9b"; depends=[AnnotationDbi AnnotationHub DelayedArray DelayedMatrixStats ExperimentHub S4Vectors SummarizedExperiment]; }; - chipenrich_data = derive2 { name="chipenrich.data"; version="2.16.0"; sha256="08czq1icisl1vgbdbr4km8gxxii198546iwwr5himrvwjfqy4vvw"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicRanges IRanges readr rtracklayer S4Vectors]; }; - chipseqDBData = derive2 { name="chipseqDBData"; version="1.8.1"; sha256="1dfm8kl3sn6rmnnlr5kxc2b1wjy3f6kmf3m01c4c1an9lig04zv5"; depends=[AnnotationHub ExperimentHub Rsamtools S4Vectors]; }; - chromstaRData = derive2 { name="chromstaRData"; version="1.18.0"; sha256="0lvyw3cr2bjqgziv9l95fcl63bp98zcygviwmh40mrvwfp9590n3"; depends=[]; }; - clustifyrdatahub = derive2 { name="clustifyrdatahub"; version="1.2.0"; sha256="04vizbnfhk3gq8h94k804hwhpfscnpj93li5bmrjhbcp80s9lqah"; depends=[ExperimentHub]; }; - cnvGSAdata = derive2 { name="cnvGSAdata"; version="1.28.0"; sha256="0gmvlrmhyxl82akxsyrcvx6m7qwfh8gbjghgb6cy2q1a4vn9vs6m"; depends=[cnvGSA]; }; - colonCA = derive2 { name="colonCA"; version="1.34.0"; sha256="1zcm90azdzjydj2gwpbsxh4fph8lp8n5k2hmvh8nyids8kmcp200"; depends=[Biobase]; }; - curatedAdipoArray = derive2 { name="curatedAdipoArray"; version="1.4.0"; sha256="0pqiympiiys7f8yna56pfywf8b0nf9w4j3yyr25iqlx81y2jzcdj"; depends=[]; }; - curatedAdipoChIP = derive2 { name="curatedAdipoChIP"; version="1.8.0"; sha256="0qq49amcbdicdlfbsdr8wmhrl5gpk897zchsmpm5s9svrn0nbjm6"; depends=[ExperimentHub SummarizedExperiment]; }; - curatedAdipoRNA = derive2 { name="curatedAdipoRNA"; version="1.8.0"; sha256="0jwnagwlsxi47ql35cchrsrc1wlqgv1g4rm5dwbyasq3lgsh7a9n"; depends=[SummarizedExperiment]; }; - curatedBladderData = derive2 { name="curatedBladderData"; version="1.28.0"; sha256="1f66avn99wxsyy1jkiljgcir8vy9wg266blmdsh0wrjlk0cb2jmx"; depends=[affy]; }; - curatedBreastData = derive2 { name="curatedBreastData"; version="2.20.0"; sha256="1gick1qkwgjgw76m99g9lxljnh2mrlawq9789h8kfp48cpdzs99b"; depends=[Biobase BiocStyle ggplot2 impute XML]; }; - curatedCRCData = derive2 { name="curatedCRCData"; version="2.24.0"; sha256="1pzlw72an1flqz0lr52diqslkxgpcrfgzzw99llilmpr40nwdb4z"; depends=[BiocGenerics nlme]; }; - curatedMetagenomicData = derive2 { name="curatedMetagenomicData"; version="3.0.10"; sha256="15v8dirzjlyb1bp2r82yvhax9vgnxyamfps7042sncvzmxlyjnp8"; depends=[AnnotationHub dplyr ExperimentHub magrittr purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr tidyselect TreeSummarizedExperiment]; }; - curatedOvarianData = derive2 { name="curatedOvarianData"; version="1.30.0"; sha256="1qfhwkbr884g1xgrp8d2d20d9b2c1v5pvv3kf49lypxcd7m5njzg"; depends=[affy BiocGenerics]; }; - curatedTCGAData = derive2 { name="curatedTCGAData"; version="1.14.0"; sha256="0fr368619d75jwqjn4mrcc3dagd7hnk8xpm4y3arrn15g92wflzh"; depends=[AnnotationHub ExperimentHub HDF5Array MultiAssayExperiment S4Vectors SummarizedExperiment]; }; - davidTiling = derive2 { name="davidTiling"; version="1.32.0"; sha256="0yjd5myq67hgjrpxw4n1kpplsgndw43jg97ghvb1jpxfshhajs0x"; depends=[Biobase GO_db tilingArray]; }; - depmap = derive2 { name="depmap"; version="1.6.0"; sha256="1hvxq1ph9qzrm34h4wpq83fk6lchlxvw8v28l80bjkqmq43jflsm"; depends=[AnnotationHub dplyr ExperimentHub]; }; - derfinderData = derive2 { name="derfinderData"; version="2.10.0"; sha256="1xmc6b2634iff34mw08bxxgasq9s3p3yl6b4s492pcrj4jj21x25"; depends=[]; }; - diffloopdata = derive2 { name="diffloopdata"; version="1.20.0"; sha256="03z6m4fvf69bgqzijyn7ccagqq7kcjb1056nqc303n5l2pp0ms1b"; depends=[]; }; - diggitdata = derive2 { name="diggitdata"; version="1.24.0"; sha256="0hj7nw306pdy5nwbv5bhl8yrgh09f5jp263l8jiw8fha3vhygsqk"; depends=[Biobase viper]; }; - dorothea = derive2 { name="dorothea"; version="1.4.2"; sha256="0r0ax28rqa0grp0vlq7dfsrl048lhhzxjmaapwm4asnqqv0rl13q"; depends=[bcellViper dplyr magrittr viper]; }; - dressCheck = derive2 { name="dressCheck"; version="0.30.0"; sha256="0vd0gaqgry2vwfh4pnqzr341dlr723w0ivlq9da85066lcyqjlmg"; depends=[Biobase]; }; - dyebiasexamples = derive2 { name="dyebiasexamples"; version="1.32.0"; sha256="0bmc53rma0mmyvj0wmzbvwdyjlzqh1wvl1225xmfqzcri8681g27"; depends=[GEOquery marray]; }; - ecoliLeucine = derive2 { name="ecoliLeucine"; version="1.32.0"; sha256="0lkqkwnfn14s41hz9yvzr4ic9rmv005dljhf237rgprmjy72p2ij"; depends=[affy ecolicdf]; }; - emtdata = derive2 { name="emtdata"; version="1.0.0"; sha256="0pdsgamiipwz05wsyrd8w55y9qxjc6fpnhj8wzdapzf77f8z70kz"; depends=[edgeR ExperimentHub SummarizedExperiment]; }; - estrogen = derive2 { name="estrogen"; version="1.38.0"; sha256="02w8v7jpmb479mq944sn27zpm2hlfin7j8grpvqsqn342s7lic1j"; depends=[]; }; - etec16s = derive2 { name="etec16s"; version="1.20.0"; sha256="18kqd4l7na3kaby1bvqvhl2lrb82n8qxc42ks1103cqpbbzr2ms1"; depends=[Biobase metagenomeSeq]; }; - ewceData = derive2 { name="ewceData"; version="1.0.0"; sha256="1jl6c7xaf9w8m9v1ijx11p5788qdf0qcjjqnj811nq3pm8wf83gr"; depends=[ExperimentHub]; }; - faahKO = derive2 { name="faahKO"; version="1.32.0"; sha256="0q7z45bw9brbivgjzfw13y6qb7s9w4n5mifjzj6hlkp69m0xvdqr"; depends=[xcms]; }; - fabiaData = derive2 { name="fabiaData"; version="1.30.0"; sha256="1qcs3rjks6q67mxs5czqn770pp818d1rdz636vqylysjscska1md"; depends=[Biobase]; }; - ffpeExampleData = derive2 { name="ffpeExampleData"; version="1.30.0"; sha256="01rdnpq1nfrmprnc0r64m9zr9f66yw4iy8s5qy4y9ssz9y48fyjk"; depends=[lumi]; }; - fibroEset = derive2 { name="fibroEset"; version="1.34.0"; sha256="0gvn15fd88v9nf150cg8hbyg3djx2yz69q1lswi1nwhxp5vi37y0"; depends=[Biobase]; }; - fission = derive2 { name="fission"; version="1.12.0"; sha256="0g979bifyfjy27lngmqq318j76z7mwxydna50k64gld6scypdir8"; depends=[SummarizedExperiment]; }; - flowPloidyData = derive2 { name="flowPloidyData"; version="1.18.0"; sha256="07hh6haz593mgihgg6bwayajvb6w07n8sj7kpc617nkxl8fbb8ar"; depends=[]; }; - flowWorkspaceData = derive2 { name="flowWorkspaceData"; version="3.4.0"; sha256="02krcdh4gldqab2nl3mdqzcv0vg7jy47qn8vgkmggk6y1mq1yrpp"; depends=[]; }; - frmaExampleData = derive2 { name="frmaExampleData"; version="1.28.0"; sha256="1sh6qcx699lq1a324pm5f201ilm3wypmv862nl5271jw02c4wf3m"; depends=[]; }; - furrowSeg = derive2 { name="furrowSeg"; version="1.20.0"; sha256="1a6kmdzr31k5w71j5zryfwabkjlkwizs57z660v2wxh61if95nws"; depends=[abind dplyr EBImage locfit tiff]; }; - gageData = derive2 { name="gageData"; version="2.30.0"; sha256="1x7fym3mjz0r5dlw9bwhlfgp8kly8zc7bxbl4g7ybq9gaiq0w41z"; depends=[]; }; - gaschYHS = derive2 { name="gaschYHS"; version="1.30.0"; sha256="1ji9iklr1dryzlx9mji4gipjld4gvm7lriyyc79q72ixm2s3jhpz"; depends=[Biobase]; }; - gatingMLData = derive2 { name="gatingMLData"; version="2.32.0"; sha256="0yfzfcq7a7iicp221ifi96pfgbdhgk1ajmvjyl8a5zf82s8cd4vp"; depends=[]; }; - gcspikelite = derive2 { name="gcspikelite"; version="1.30.0"; sha256="0v2lma129ywngyg907kgdi9xrigldpv3r9kdkadvghpw3grqp0yh"; depends=[]; }; - geneLenDataBase = derive2 { name="geneLenDataBase"; version="1.28.0"; sha256="0d2ia0v6l6vrzk4xbq0s2gbgg2xikabjyipv4yppnf7s9lkphrhz"; depends=[GenomicFeatures rtracklayer]; }; - genomationData = derive2 { name="genomationData"; version="1.24.0"; sha256="1b6x46hn5qkm7jva8vvi83s4xzy5hg8hxgmf0v00jws39hgdqwmw"; depends=[]; }; - golubEsets = derive2 { name="golubEsets"; version="1.34.0"; sha256="1r3mxp1frb69dihdnw82vjh0scw8fd30wv5dq7cml9sihyg4dllp"; depends=[Biobase]; }; - gpaExample = derive2 { name="gpaExample"; version="1.4.0"; sha256="11z0jq3lnhpd4mkwi67g2n9yq4l6h9pxxdjrgx2pj032l8n3g47q"; depends=[]; }; - grndata = derive2 { name="grndata"; version="1.24.0"; sha256="01drlc1yrnz82dc3527axb68gpz3wqsbqxw7qngqhnwj4a4ahy03"; depends=[]; }; - h5vcData = derive2 { name="h5vcData"; version="2.12.0"; sha256="1ljd2z9x1b8xyrj5gf0pqh9ynnzrg1jm86ji234v9333pqm0q25n"; depends=[]; }; - hapmap100khind = derive2 { name="hapmap100khind"; version="1.34.0"; sha256="1xh5q681in2aws3w5jnh3aiji6j11l72195lfrjv7lpc94l076fs"; depends=[]; }; - hapmap100kxba = derive2 { name="hapmap100kxba"; version="1.34.0"; sha256="0fkmhd1518clyrkzifq0ywlg1axp8np21zwchrrg6f4vgvikdxqn"; depends=[]; }; - hapmap500knsp = derive2 { name="hapmap500knsp"; version="1.34.0"; sha256="1bdla019lks2bd5sgli4d0g235jyapvhsvxc6pyqp3imy59rg82i"; depends=[]; }; - hapmap500ksty = derive2 { name="hapmap500ksty"; version="1.34.0"; sha256="0si8kpym40wv02d54yr5d0jy16gh85mdlbgs6nm4piww6lbkqzaz"; depends=[]; }; - hapmapsnp5 = derive2 { name="hapmapsnp5"; version="1.34.0"; sha256="0ahvw0hmx32sch47ciyca302jjh77ara9p66dzmch4k4sjxip6jl"; depends=[]; }; - hapmapsnp6 = derive2 { name="hapmapsnp6"; version="1.34.0"; sha256="0j5r3v8fdc42z76hcglbfh1jqfx4pfwxyyafz7x2arlpg5q0snzl"; depends=[]; }; - harbChIP = derive2 { name="harbChIP"; version="1.30.0"; sha256="1bg065ahrklsyzax0909w0q8b2nwrhh4nv95pxqi6nl4gvj6vgp7"; depends=[Biobase Biostrings IRanges]; }; - healthyFlowData = derive2 { name="healthyFlowData"; version="1.30.0"; sha256="0dyp8kxfihqpgps2j1xcxg8zjiggy2i4aqrnngpa8074795pi32y"; depends=[flowCore]; }; - hgu133abarcodevecs = derive2 { name="hgu133abarcodevecs"; version="1.30.0"; sha256="0swj9254b7rz6vv2bfhpj4mafawrg34irq4rfdng2ybylncsjqar"; depends=[]; }; - hgu133plus2CellScore = derive2 { name="hgu133plus2CellScore"; version="1.12.0"; sha256="0yvsf8a3imyjz6a6imbbb42hs76nhgqghybpyc90izy06wbdg3db"; depends=[Biobase]; }; - hgu133plus2barcodevecs = derive2 { name="hgu133plus2barcodevecs"; version="1.30.0"; sha256="0n88p8s7mz13q5jl361mfzsc7ggrkdzi0i9kpgnzxdn44hgv7gfr"; depends=[]; }; - hgu2beta7 = derive2 { name="hgu2beta7"; version="1.32.0"; sha256="0nac9bqqfihsaswqw73k5ybp88vz38fb8zdh40fca90zcfz47x2k"; depends=[]; }; - humanStemCell = derive2 { name="humanStemCell"; version="0.32.0"; sha256="1k48s6fqnr13pa53gm1sf3rwc3a8sx0svfmgmg9vpy5dfywdq3r0"; depends=[Biobase hgu133plus2_db]; }; - imcdatasets = derive2 { name="imcdatasets"; version="1.0.1"; sha256="1vialgy4r06kf8b2r9j0dqd0a5chzpr8n1l2v5mxwv7c4gbxqph3"; depends=[cytomapper DelayedArray ExperimentHub HDF5Array S4Vectors SingleCellExperiment]; }; - kidpack = derive2 { name="kidpack"; version="1.34.0"; sha256="1fi7nrmqk1ldics8bxdpagf6a8m662pv63vr5wyyv0kz3hc5jvpr"; depends=[Biobase]; }; - leeBamViews = derive2 { name="leeBamViews"; version="1.28.0"; sha256="1bnvdpn2ycpldv9b9pgm4vcrly3w9lyzh6vip35pfjf0gnjjvj7g"; depends=[Biobase BSgenome GenomicAlignments GenomicRanges IRanges Rsamtools S4Vectors]; }; - leukemiasEset = derive2 { name="leukemiasEset"; version="1.28.0"; sha256="1dcws9nwb6rf4ps84zysi1k27a4nv0nq1vw3hpa5f9jxpsqwa9xa"; depends=[Biobase]; }; - lumiBarnes = derive2 { name="lumiBarnes"; version="1.32.0"; sha256="0bgdywd3w9gfl739khm0bsib3dzy8s3682992jh6zf84qhyggws9"; depends=[Biobase lumi]; }; - lungExpression = derive2 { name="lungExpression"; version="0.30.0"; sha256="103k6kj7a3p7fnn0cva0j1884ypbqlc88vg066d0kbnp9wzbvlrb"; depends=[Biobase]; }; - lydata = derive2 { name="lydata"; version="1.18.0"; sha256="1nxx94p15szbrhzz45c75bjs0ljl2iz2vibrjw9wqf5imzlx62fq"; depends=[]; }; - mAPKLData = derive2 { name="mAPKLData"; version="1.24.0"; sha256="0rkd14z0wajm4l82kmyjxil3ab9xhmrbd0mwm440cb3hq0m9pqa8"; depends=[]; }; - mCSEAdata = derive2 { name="mCSEAdata"; version="1.12.0"; sha256="16yx7jj9ya8b3l6ys7ndzpdpfzpkxm2jsp04bfk8jb87nh66f355"; depends=[]; }; - macrophage = derive2 { name="macrophage"; version="1.8.0"; sha256="1rqvr0l720jhm458k7vq3xhnaxdx07nd621pq0qmlf501zmjn2js"; depends=[]; }; - mammaPrintData = derive2 { name="mammaPrintData"; version="1.28.0"; sha256="1lmp14mxz1zjqpix25a25c0ydzkg4hxvdaqxn3bpdpckiwslxzik"; depends=[]; }; - maqcExpression4plex = derive2 { name="maqcExpression4plex"; version="1.36.0"; sha256="0lbw5cw9inglykf767ifc2spb3lkpnx4qrg0laylijbh7wrwp54h"; depends=[]; }; - mcsurvdata = derive2 { name="mcsurvdata"; version="1.10.0"; sha256="0ywgqqa1ha3nf1scjyw5fsr0drbal74a2zw43rlb4v943jy6wg1m"; depends=[AnnotationHub Biobase ExperimentHub]; }; - metaMSdata = derive2 { name="metaMSdata"; version="1.28.0"; sha256="1dgspwd6agzmqiwpn19xahj9c3ydghn2bxcb9p8fy383270nday6"; depends=[]; }; - methylclockData = derive2 { name="methylclockData"; version="1.0.9"; sha256="1xs3yi4b39sprlma9rnvbv4amsq04f8xzsaqkx31h9id6849axhg"; depends=[ExperimentHub ExperimentHubData]; }; - miRNATarget = derive2 { name="miRNATarget"; version="1.30.0"; sha256="163pybzsd312grniglyl8iyvch5dpx68jlx3gcnin4lsl3n7dmir"; depends=[Biobase]; }; - miRcompData = derive2 { name="miRcompData"; version="1.22.0"; sha256="1g7fhg60jl70m156cqp56pj2z54kifyay1c4vgd1cn1arws7g29r"; depends=[]; }; - microRNAome = derive2 { name="microRNAome"; version="1.14.0"; sha256="0rbnpml5a3h5rma1pmblvad1bapzzq413885zir3083r16avsr84"; depends=[SummarizedExperiment]; }; - microbiomeDataSets = derive2 { name="microbiomeDataSets"; version="1.0.1"; sha256="06h694lg6h74andvzijgjzgngwb80g1g461sm3lz9rqq7dpq1w0j"; depends=[ape BiocGenerics Biostrings ExperimentHub MultiAssayExperiment SummarizedExperiment TreeSummarizedExperiment]; }; - minfiData = derive2 { name="minfiData"; version="0.38.0"; sha256="16rshq95wsmj6cjipch8w79il2zf6krs3p1n3nybnbw206wfcg6l"; depends=[IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest minfi]; }; - minfiDataEPIC = derive2 { name="minfiDataEPIC"; version="1.18.0"; sha256="1gjxzzp3hy4pn79s4c0mpzkqwc1g6iwfvmd34qkkrwwbrib4cf4b"; depends=[IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest minfi]; }; - minionSummaryData = derive2 { name="minionSummaryData"; version="1.22.0"; sha256="0r4fr27sh8sbvn17v9n8z4lsvgcwzp7fd9xmkbs2k4bj7qy3d1ck"; depends=[]; }; - mosaicsExample = derive2 { name="mosaicsExample"; version="1.30.0"; sha256="18804aqmvsc5ncqvh872p6033aml83y9d7nwq2hsf1p0fxh47l0r"; depends=[]; }; - mouse4302barcodevecs = derive2 { name="mouse4302barcodevecs"; version="1.30.0"; sha256="1z1m3gn02qiqmhk9ib5xcv8w1ljmp4hc8s5f0sgjcw0zd7gs8blp"; depends=[]; }; - msPurityData = derive2 { name="msPurityData"; version="1.20.0"; sha256="11i1xn42fl0vdsc3b640g5k1j5lirscqcqbyw1smklpjsb874plf"; depends=[]; }; - msd16s = derive2 { name="msd16s"; version="1.12.0"; sha256="05m40zhj25mbaslsh2hl30dndvlb7jqjykksdidh1c99xhg2sxrr"; depends=[Biobase metagenomeSeq]; }; - msdata = derive2 { name="msdata"; version="0.32.0"; sha256="1l1457bhfxrny11qxmn5ylhlxb4vfy84vwhsqfk3n48yrdpss890"; depends=[]; }; - msigdb = derive2 { name="msigdb"; version="1.0.0"; sha256="1pwn1h28cg4h78p2h077b0zmydrd90dlgivislg3pcjx30c7qhm5"; depends=[AnnotationDbi ExperimentHub GSEABase org_Hs_eg_db org_Mm_eg_db]; }; - msqc1 = derive2 { name="msqc1"; version="1.20.0"; sha256="13vyr4wdzj14lx2aggvnax21b8b9zlr75l6ybkyrw8q7shpmfpl6"; depends=[lattice]; }; - mtbls2 = derive2 { name="mtbls2"; version="1.22.0"; sha256="0jyvvpqs8n08dpzd492j2amg0xsf6rcwvzrfsr8knsi1v0fw4rkv"; depends=[]; }; - muscData = derive2 { name="muscData"; version="1.6.0"; sha256="08d8j6sxrkvz5xnxcy6g4p3j6phr20lwcpvfqfqidjl4skf01zp5"; depends=[ExperimentHub SingleCellExperiment]; }; - mvoutData = derive2 { name="mvoutData"; version="1.28.0"; sha256="1p8j1fl07rp03m9gskdnll4qzbm4bp4v15rsir1nc366idibcb8p"; depends=[affy Biobase lumi]; }; - nanotubes = derive2 { name="nanotubes"; version="1.8.0"; sha256="0bl6yc62ahlafnmb6hv5064skrlv3b67npaxpc5rx1h5xsqxn5ni"; depends=[]; }; - oct4 = derive2 { name="oct4"; version="1.8.0"; sha256="1a4m6l0iwlcprhmnx6bv12s9av4bkrvhji9a1s3axz9x14bdc2ls"; depends=[]; }; - optimalFlowData = derive2 { name="optimalFlowData"; version="1.4.0"; sha256="194xfwia2zidmv7y184dnivhq4ldrfaywacg4bisl9d65rrzrrs3"; depends=[]; }; - pRolocdata = derive2 { name="pRolocdata"; version="1.30.0"; sha256="1gd8mxal0x2v8sn3m3jxd2fm73dcxmv1c6rmgbp8gkkm3av2yj4i"; depends=[Biobase MSnbase]; }; - parathyroidSE = derive2 { name="parathyroidSE"; version="1.30.0"; sha256="1sx0sby9i0jffni6zcpw904m9xajvm7959vd26n4mhd3jpi98rcw"; depends=[SummarizedExperiment]; }; - pasilla = derive2 { name="pasilla"; version="1.20.0"; sha256="1nwc1asikgbjadjcnlk1zl8apjwy81cz4y6qh22w5pzjk1ah1zyh"; depends=[]; }; - pasillaBamSubset = derive2 { name="pasillaBamSubset"; version="0.30.0"; sha256="17ifay8vsh9n0xfh7aa9vg2hgjbl91lx76fnzby18wjph3w0k3ff"; depends=[]; }; - pcxnData = derive2 { name="pcxnData"; version="2.14.0"; sha256="03j8bmlk0j680g5pcbfggvxyr3j94yaaxnlzmxxllzqfrnpl5phm"; depends=[]; }; - pd_atdschip_tiling = derive2 { name="pd.atdschip.tiling"; version="0.30.0"; sha256="1q59kwzsmyq8awkhk7d9klw7yfbqvxwx87yjq1k1zb53mh3ni1pl"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pepDat = derive2 { name="pepDat"; version="1.12.0"; sha256="05gizhc2xqjfpcaqlypxha7050wm0grcwyq9fvmngij3k22bdj4j"; depends=[GenomicRanges]; }; - plasFIA = derive2 { name="plasFIA"; version="1.20.0"; sha256="1c8sbi24lbp173854viy8jh2vvp8k8aka7xwwhkz0qzp8d35fhd0"; depends=[proFIA]; }; - ppiData = derive2 { name="ppiData"; version="0.30.0"; sha256="13f2qffxcmg4r3mmiwrihrn0abl5xvklx56d4f3s0nnvzhj88p0c"; depends=[AnnotationDbi graph]; }; - prebsdata = derive2 { name="prebsdata"; version="1.28.0"; sha256="1n7rylqrafl8c82m4waxz5flvky64mhphk4lnnqlk512c2b3855z"; depends=[]; }; - preciseTADhub = derive2 { name="preciseTADhub"; version="1.0.0"; sha256="1n8p0rr47bndg1f0x1z5gl32iy31v0isldz1pdf7arbcnl78cwmw"; depends=[ExperimentHub]; }; - prostateCancerCamcap = derive2 { name="prostateCancerCamcap"; version="1.20.0"; sha256="085da764mlk9qb3z3d1y0j6a359hp17h880nlgnpq1h7ip9kl5an"; depends=[Biobase]; }; - prostateCancerGrasso = derive2 { name="prostateCancerGrasso"; version="1.20.0"; sha256="1fimj3awfc2hl0ryh7g7bkklmgr4r6kkjfci1qrnrcwbc0zvkb8p"; depends=[Biobase]; }; - prostateCancerStockholm = derive2 { name="prostateCancerStockholm"; version="1.20.0"; sha256="1zhmij5zdwy5gxxghy51nhjc6nn1b6jhck203ydvrk1hqa85j9k2"; depends=[Biobase]; }; - prostateCancerTaylor = derive2 { name="prostateCancerTaylor"; version="1.20.0"; sha256="0brkqjpz2l2c3nkc85q5inl98xyw602rj1zlca45chy537i273pf"; depends=[Biobase]; }; - prostateCancerVarambally = derive2 { name="prostateCancerVarambally"; version="1.20.0"; sha256="19rrrph8fmk99bx49i6a3cs95cf392ij8ccml4a6dh2mzd8bys92"; depends=[Biobase]; }; - ptairData = derive2 { name="ptairData"; version="1.0.1"; sha256="01scd1w8wji3008dgvxcv6csi2k5wlndxcrnsxdgjcd9hl7m86v1"; depends=[rhdf5 signal]; }; - pumadata = derive2 { name="pumadata"; version="2.28.0"; sha256="1dy3mywrl3zx73mp50ihx981igrgygh309mvfi927aiigjyba0y8"; depends=[Biobase oligo puma]; }; - pwrEWAS_data = derive2 { name="pwrEWAS.data"; version="1.6.0"; sha256="1qjwy9dc91c9jgrrlfl9q8h6ycnmqm2gknzfdf4cnhpskz8a4428"; depends=[ExperimentHub]; }; - qPLEXdata = derive2 { name="qPLEXdata"; version="1.10.0"; sha256="09g541sz9jkk0adxy9n2ckzjkl87fl1y86i02vsz2b0b1pial53b"; depends=[dplyr knitr MSnbase qPLEXanalyzer]; }; - rRDPData = derive2 { name="rRDPData"; version="1.12.0"; sha256="0jiwvf7kismx3bxw1yrp940352q7ac78lm25ibmfz3nrxy347ynp"; depends=[rRDP]; }; - rcellminerData = derive2 { name="rcellminerData"; version="2.14.0"; sha256="11dpy9r19p0zgk9y6sq0bf6fhx4amnshfh5z9ipkxnh3i68yn889"; depends=[Biobase]; }; - restfulSEData = derive2 { name="restfulSEData"; version="1.14.0"; sha256="0y4wfdrj2wj41n0fprpmswzbp27nzqbd31x1lb16z4b2id58s2vv"; depends=[ExperimentHub SummarizedExperiment]; }; - rheumaticConditionWOLLBOLD = derive2 { name="rheumaticConditionWOLLBOLD"; version="1.30.0"; sha256="1d6xs1vs9vkjz64b3v1srjizr6xqi8crfbl34yxd3lpfipp14f5h"; depends=[]; }; - sampleClassifierData = derive2 { name="sampleClassifierData"; version="1.16.0"; sha256="1gjfpjisfznxhlsrfcd9q5isz5xcds38ky9j6xssks41jgdf9j5c"; depends=[SummarizedExperiment]; }; - scRNAseq = derive2 { name="scRNAseq"; version="2.6.1"; sha256="14954hn19p7idxdnf16jrvplg63rpfkvmcb2v9f5kqxg4jv02g7v"; depends=[AnnotationDbi AnnotationHub BiocGenerics ensembldb ExperimentHub GenomicFeatures GenomicRanges S4Vectors SingleCellExperiment SummarizedExperiment]; }; - scTHI_data = derive2 { name="scTHI.data"; version="1.4.0"; sha256="1pwgs7qwzaajhfqq5iyr41npxf3ivcjii40mp4w9ddgmhqw74mbn"; depends=[]; }; - scpdata = derive2 { name="scpdata"; version="1.0.0"; sha256="0adfbzpvrh6m2fa88cpsyvjvdnb7cfkb2d367n3bsc5ga0myk1dz"; depends=[AnnotationHub ExperimentHub QFeatures S4Vectors SingleCellExperiment]; }; - seq2pathway_data = derive2 { name="seq2pathway.data"; version="1.24.0"; sha256="06h3rmh1m5lr7hzkd2yqw241gaqc4wx35nz126jnq767xk0vaw6f"; depends=[]; }; - seqCNA_annot = derive2 { name="seqCNA.annot"; version="1.28.0"; sha256="112766y3fknrnmnv13nxzgyspw1l331x4vk2i3dfab0hg1khjr2c"; depends=[]; }; - seqc = derive2 { name="seqc"; version="1.26.0"; sha256="0vm726y6m67jc2kqqkav1j1a1irs6qz43pg4dmr6kdpslj1yyy2m"; depends=[Biobase]; }; - serumStimulation = derive2 { name="serumStimulation"; version="1.28.0"; sha256="0cf70km8virxjpz93rfvvfnzykqxvrlzgacfrksf07izj90dp6s8"; depends=[]; }; - sesameData = derive2 { name="sesameData"; version="1.10.1"; sha256="0h4d2mbaizxqacc52xc4yd5x7p6ywsskaf1y2x8dznrijszmxi2i"; depends=[AnnotationHub curl ExperimentHub rmarkdown]; }; - seventyGeneData = derive2 { name="seventyGeneData"; version="1.28.0"; sha256="1jyb6lj71dhc00fka4913zxxkd6cqmd39r4khx1bhpi7nnvf7qcf"; depends=[]; }; - shinyMethylData = derive2 { name="shinyMethylData"; version="1.12.0"; sha256="0q9m7ywsdqk02bnadxf2g975zy8sddw8yrjrr0rcl730jhznw5ph"; depends=[]; }; - signatureSearchData = derive2 { name="signatureSearchData"; version="1.6.0"; sha256="12s2mp4lkr47gwspqnllrkmzldr99dqqjxrqrcjl2xmzn93fry72"; depends=[affy Biobase dplyr ExperimentHub limma magrittr R_utils rhdf5 signatureSearch]; }; - simpIntLists = derive2 { name="simpIntLists"; version="1.28.0"; sha256="04z4aa60546jl88kj62y0h93gh9gbdpzfm6nhxc1g8541jmarrjs"; depends=[]; }; - spatialLIBD = derive2 { name="spatialLIBD"; version="1.4.0"; sha256="17xb12gzfsjyawyzms3c9709gifsmpbr0sqgf77sjc9z60as4d4d"; depends=[AnnotationHub benchmarkme BiocFileCache cowplot DT ExperimentHub fields ggplot2 golem IRanges jsonlite plotly png Polychrome RColorBrewer S4Vectors scater sessioninfo shiny shinyWidgets SingleCellExperiment SpatialExperiment SummarizedExperiment tibble viridisLite]; }; - spqnData = derive2 { name="spqnData"; version="1.4.0"; sha256="1jqq9gc1s16q080p7jwjzx1jxd8x2i98gfqd0z5b321x8gsxnsqx"; depends=[SummarizedExperiment]; }; - stemHypoxia = derive2 { name="stemHypoxia"; version="1.28.0"; sha256="1yvj8knlabh8ydaf513iyx7109cbwrpp14h27xywrybvfijdplmz"; depends=[]; }; - stjudem = derive2 { name="stjudem"; version="1.32.0"; sha256="138j1lb6rk1vp11ya4ghzarpid78sc53smp68kfr2q33k24sglv6"; depends=[]; }; - synapterdata = derive2 { name="synapterdata"; version="1.30.0"; sha256="1iamafvdnadymn1jr3hwj4yxf34w7d1jvf166kzn3icjj503cl44"; depends=[]; }; - systemPipeRdata = derive2 { name="systemPipeRdata"; version="1.20.0"; sha256="0w1bwwd8pqyfvjlrx4h4mzdy2dbmnmrjxwvm9lmwgahd6b9sv5y2"; depends=[BiocGenerics GenomicFeatures GenomicRanges IRanges jsonlite remotes Rsamtools rtracklayer ShortRead]; }; - tartare = derive2 { name="tartare"; version="1.6.0"; sha256="0jw9mqqgz19k805nqjrnxlp1q6l9sfv8d0g73jaxqdrkfjicwby1"; depends=[AnnotationHub ExperimentHub]; }; - tcgaWGBSData_hg19 = derive2 { name="tcgaWGBSData.hg19"; version="1.10.0"; sha256="021zv61b7lnhz152aq9x2m3azxhygayjsf8m85mazn90z2n4g8nr"; depends=[bsseq ExperimentHub knitr]; }; - timecoursedata = derive2 { name="timecoursedata"; version="1.2.0"; sha256="09v8gsmqpcr9i8lrfc2jdddd75liz5mcyi9m7rxgjgwdl5dsp3gn"; depends=[SummarizedExperiment]; }; - tinesath1cdf = derive2 { name="tinesath1cdf"; version="1.30.0"; sha256="0k4y33lki9pwk914gx8h3c64fkjgy5www3rcchn6aa1sj72ar42q"; depends=[]; }; - tinesath1probe = derive2 { name="tinesath1probe"; version="1.30.0"; sha256="0rzndr203nsay6f2vqg4g34gycbwisv1m5j8ssc7mzzamc687yl7"; depends=[AnnotationDbi]; }; - tissueTreg = derive2 { name="tissueTreg"; version="1.12.0"; sha256="1f1qjc37pj2jvhrprqvy6x923646mbm23b6p27ybr4plwqya2nl5"; depends=[]; }; - tofsimsData = derive2 { name="tofsimsData"; version="1.20.0"; sha256="11zx5fwmis8nk6274shzw53b1ynqipbs4mba23hrngnb4j7syq9f"; depends=[]; }; - topdownrdata = derive2 { name="topdownrdata"; version="1.14.0"; sha256="0rawjpiqzjvzk2b1mlbz0cwml9qh75lggk60dkrdrm7nslsbwl2j"; depends=[topdownr]; }; - tweeDEseqCountData = derive2 { name="tweeDEseqCountData"; version="1.30.0"; sha256="1m12b9nagrrl1hc566543bqsc07wp1b9c73gb046ljqnzyyhkp4k"; depends=[Biobase]; }; - tximportData = derive2 { name="tximportData"; version="1.20.0"; sha256="0y4nx3rnd45d3mmq6182q5xssr6xf6hr4ad7zk64q9s1y9h9gv3s"; depends=[]; }; - vulcandata = derive2 { name="vulcandata"; version="1.14.0"; sha256="01b0ds1c9mmmrxf7miavjqqmh04b58ps3chf9s9la1wnrshmcq9z"; depends=[]; }; - yeastCC = derive2 { name="yeastCC"; version="1.32.0"; sha256="0g77r5dblag38nlh5r1aj5n5vj9smi5509y28j0bmr47qwpmadch"; depends=[Biobase]; }; - yeastExpData = derive2 { name="yeastExpData"; version="0.38.0"; sha256="0ypw7bsd0pjfkfgdphzz5ivr43h3c2c91xg8szq4m9rx3aqa7pa1"; depends=[graph]; }; - yeastGSData = derive2 { name="yeastGSData"; version="0.30.0"; sha256="190vf8c8qg3khpv28w43l4c7p92rnq7qbfh2z2qbr73y4nrmwnj4"; depends=[]; }; - yeastNagalakshmi = derive2 { name="yeastNagalakshmi"; version="1.28.0"; sha256="08w41bf6xzf18q1088dvc0zcqgdrv9x9sbvxbmx2r68jwn8vcv7i"; depends=[]; }; - yeastRNASeq = derive2 { name="yeastRNASeq"; version="0.30.0"; sha256="0iam9nlfcil9wq782pg2dj5m2hcw3607mhda161r8bc57ddndlp6"; depends=[]; }; - zebrafishRNASeq = derive2 { name="zebrafishRNASeq"; version="1.12.0"; sha256="0541flrnrpz3k8ldi2hspi5gyxk3zc6i7vvk12dgs67pp8g3pwjx"; depends=[]; }; - + ABAData = derive2 { name="ABAData"; version="1.24.0"; sha256="1wgniq7ibvjj6dx63ixr3i5yclqmg94qpifzfbzzn9yjj3wnikzr"; depends=[]; }; + ALL = derive2 { name="ALL"; version="1.36.0"; sha256="0s591k9dvh5kfnxhc8agpbc40pqn1kpqqs8rpcyvf4kyzncsz5lb"; depends=[Biobase]; }; + ALLMLL = derive2 { name="ALLMLL"; version="1.34.0"; sha256="0qdjfx4d33ymn42jy0jvp4xlmmwr8c5zss1x4b1rl6nmbdckh3ns"; depends=[affy]; }; + ARRmData = derive2 { name="ARRmData"; version="1.30.0"; sha256="16rw9ww9vp2zs135z91vcc0qvdqsqfmymip7n46a27fahc25s3gz"; depends=[]; }; + ASICSdata = derive2 { name="ASICSdata"; version="1.14.0"; sha256="0nb2im2zjz2xi7silh10jf5f7a7bvjvwn7ly0wdzc1bynnbk13f7"; depends=[]; }; + Affyhgu133A2Expr = derive2 { name="Affyhgu133A2Expr"; version="1.30.0"; sha256="1ib8ax0msq77izdj5v50y5z650cs48v4r1q6xjkbz96m940fl5rq"; depends=[]; }; + Affyhgu133Plus2Expr = derive2 { name="Affyhgu133Plus2Expr"; version="1.28.0"; sha256="0p4yvhdyff6ac5ffgfhap34604dhpqqzxi9c8ib35cm6xsaj27r1"; depends=[]; }; + Affyhgu133aExpr = derive2 { name="Affyhgu133aExpr"; version="1.32.0"; sha256="0snf0rabqjx80xaj3fp3rdwdvnhx963ywpqkjvzgxcyzdz1jlnan"; depends=[]; }; + AffymetrixDataTestFiles = derive2 { name="AffymetrixDataTestFiles"; version="0.32.0"; sha256="0n9pxzw495lgfc93b1bqxl6gfl33vvj5nch4525i8yk5xczg253g"; depends=[]; }; + Affymoe4302Expr = derive2 { name="Affymoe4302Expr"; version="1.32.0"; sha256="1jj5sr5xaqxajvc6bzrg54hf79qbl71r2dr1akbdf263p1vw9yi9"; depends=[]; }; + AmpAffyExample = derive2 { name="AmpAffyExample"; version="1.34.0"; sha256="0bm1wmyf3kslh720299nkffrfvshfz4n61kpl2cf8mixjr82smwz"; depends=[affy]; }; + AneuFinderData = derive2 { name="AneuFinderData"; version="1.22.0"; sha256="0p68zdw86bf3ggw6rdllyyfvsmrdkwf79xh5p3g5cn5gm19c61xy"; depends=[]; }; + AshkenazimSonChr21 = derive2 { name="AshkenazimSonChr21"; version="1.24.0"; sha256="1lybp65n59gqcixyhqh49v4acl8mmmwyyicjmbks84fpjzkkqzqf"; depends=[]; }; + AssessORFData = derive2 { name="AssessORFData"; version="1.12.0"; sha256="0v9xlm2wxlarbhj57jacn52hlxxylyfmr1gwmkss2pzw3hjyi4v1"; depends=[DECIPHER]; }; + BeadArrayUseCases = derive2 { name="BeadArrayUseCases"; version="1.32.0"; sha256="1zl54rg50v1m19fln1j1a3a22xi989sj8kk7ccjjgjhybsrvyi0r"; depends=[beadarray GEOquery limma]; }; + BeadSorted_Saliva_EPIC = derive2 { name="BeadSorted.Saliva.EPIC"; version="1.2.0"; sha256="0fmjqwwnxlfpwl6ldhq92w9cxf4x4fcm349xk3jx8q8mj20zfsm1"; depends=[ExperimentHub minfi]; }; + BioImageDbs = derive2 { name="BioImageDbs"; version="1.2.0"; sha256="0ldpbjdj5xhh7sxkjrxgp7b5yayfjvw5yah4dxgbrmw37hqssd3q"; depends=[animation EBImage einsum ExperimentHub filesstrings magick magrittr markdown rmarkdown]; }; + BloodCancerMultiOmics2017 = derive2 { name="BloodCancerMultiOmics2017"; version="1.14.0"; sha256="1nx55qhkkjvmljby04wn0fmbgcrdmqxqgxf5h4dasw884msfha4d"; depends=[beeswarm Biobase DESeq2 devtools dplyr ggdendro ggplot2 glmnet gtable ipflasso RColorBrewer reshape2 scales SummarizedExperiment survival tibble]; }; + CCl4 = derive2 { name="CCl4"; version="1.32.0"; sha256="1ljjj2fk4cji4aw2j8kf4rjgfjfbdyg8sfhvahvpyqgqwvmsmdx5"; depends=[Biobase limma]; }; + CLL = derive2 { name="CLL"; version="1.34.0"; sha256="017kjpv5rqn6vg3d4drnxj7arjxqw1hw1lxx9p0bdzr2isahcs6g"; depends=[affy Biobase]; }; + CLLmethylation = derive2 { name="CLLmethylation"; version="1.14.0"; sha256="1b3pbf3rzrl9by95gkmj3ssd1qms3hm24s1ds286jvps1y8gq97m"; depends=[ExperimentHub SummarizedExperiment]; }; + COHCAPanno = derive2 { name="COHCAPanno"; version="1.30.0"; sha256="1457af5xpryp1z8nwmrqrxp09lsvpwj4pg054w49c8g0ab6ani3m"; depends=[]; }; + CONFESSdata = derive2 { name="CONFESSdata"; version="1.22.0"; sha256="1jhh76nccr2zd11layy68fbwcwzxx1b7f66mmdfxhv6fmiwj1bh6"; depends=[]; }; + COPDSexualDimorphism_data = derive2 { name="COPDSexualDimorphism.data"; version="1.30.0"; sha256="0736axlg1rl3frxgh8mkxcnimz2skc8kx17z627i9ww5bl91f5md"; depends=[]; }; + COSMIC_67 = derive2 { name="COSMIC.67"; version="1.30.0"; sha256="09c317gkj53c7la3cd3x9b9hmz5zaccr5irhlnvidfmh1gp4z7r8"; depends=[GenomicRanges SummarizedExperiment VariantAnnotation]; }; + CRCL18 = derive2 { name="CRCL18"; version="1.14.0"; sha256="026j77hzj664pmdyrkcxq93bz5xlpq4vr95ps2vynhwalhi382hc"; depends=[Biobase]; }; + CardinalWorkflows = derive2 { name="CardinalWorkflows"; version="1.26.0"; sha256="1mk7xwxxw08wv9xnmk9szm7a90di2lp1wb35a206jr7kb3m4zx2i"; depends=[Cardinal]; }; + CellMapperData = derive2 { name="CellMapperData"; version="1.20.0"; sha256="143x9j5shnqz1s816gwi7q79np38gwq0iccc9sdl8yvxhjdw0079"; depends=[CellMapper ExperimentHub]; }; + ChAMPdata = derive2 { name="ChAMPdata"; version="2.26.0"; sha256="1zgikb6milp77kcfbizqc5ja94n6zx7pm77rg20j4v5nvpff7lh8"; depends=[BiocGenerics GenomicRanges]; }; + ChIC_data = derive2 { name="ChIC.data"; version="1.14.0"; sha256="1la6z7rd2h8annymgvybrrw31af37pqydp5wj32bpz6fcz21bx7h"; depends=[caret genomeIntervals randomForest]; }; + ChIPXpressData = derive2 { name="ChIPXpressData"; version="1.32.0"; sha256="0hbw1asyajqmshw0j897ss60yl350jl48pywnyvhkaws8bz1iina"; depends=[bigmemory]; }; + ChIPexoQualExample = derive2 { name="ChIPexoQualExample"; version="1.18.0"; sha256="1q6lg5dkvmwfjaw771x008ipzynd0jhap97rnkmcivsf84sw03nb"; depends=[]; }; + ChimpHumanBrainData = derive2 { name="ChimpHumanBrainData"; version="1.32.0"; sha256="0z7hxd7nsg1p3z1min5dcdbwgz9n3p7saad0mmvj7388g48fqwc3"; depends=[affy hexbin limma qvalue statmod]; }; + CluMSIDdata = derive2 { name="CluMSIDdata"; version="1.10.0"; sha256="1rxs2lyz5rz3zjl4z34n8iag76ks6gjaalh2adzs6dy9xnzbjnpm"; depends=[]; }; + ConnectivityMap = derive2 { name="ConnectivityMap"; version="1.30.0"; sha256="06dbyh9d7i11rzm13i0pnpn8qhd9kia8my15vs7m26cmf9b53z4j"; depends=[]; }; + CopyNeutralIMA = derive2 { name="CopyNeutralIMA"; version="1.12.0"; sha256="0kkjbw1aw0fbj5mgbxq1s811v9c5fgbiv6h5qj41cp8rbghf99lp"; depends=[ExperimentHub Rdpack]; }; + CopyhelpeR = derive2 { name="CopyhelpeR"; version="1.26.0"; sha256="1zsp03s6crrq1awhwqnn94lpmww7iraymjjxb7195b6cyyljf4ai"; depends=[]; }; + DAPARdata = derive2 { name="DAPARdata"; version="1.24.0"; sha256="1wxgcdkz6vsicak21z9ibknqqmj7jka00rkprjav8vyw30jgrgl0"; depends=[knitr MSnbase]; }; + DExMAdata = derive2 { name="DExMAdata"; version="1.2.0"; sha256="1wlh9gsrkd6njx5g5g2q2i7mqznfmy0cd1p7r18lf8v65mn3k0bi"; depends=[Biobase]; }; + DLBCL = derive2 { name="DLBCL"; version="1.34.0"; sha256="1y23bk5ywkdw57a6y4sgwz1h4jm81djxnhxw7xp9xdv1kwg6p8fj"; depends=[Biobase]; }; + DMRcatedata = derive2 { name="DMRcatedata"; version="2.12.0"; sha256="0z5jlmarvakmq5vl8pyym544xsy8rds1fprvjy0s8q6iw2y3iknb"; depends=[ExperimentHub GenomicFeatures Gviz IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 plyr readxl rtracklayer]; }; + DREAM4 = derive2 { name="DREAM4"; version="1.30.0"; sha256="0gr0n8j4a347c5wwnpq2z2gxpvxv3swfhhlj3izc8rdyw11cf41v"; depends=[SummarizedExperiment]; }; + DeSousa2013 = derive2 { name="DeSousa2013"; version="1.30.0"; sha256="1lkzzamwby4xfjj7ffnhmnxcwjaspvr7z3ijwrymd2pky46pq143"; depends=[affy AnnotationDbi Biobase cluster ConsensusClusterPlus frma frmaTools gplots hgu133plus2_db hgu133plus2frmavecs pamr rgl ROCR siggenes survival sva]; }; + DmelSGI = derive2 { name="DmelSGI"; version="1.26.0"; sha256="0zii8zrqlmcl1cvdvsiikah0yg7h2ssj571j7fgh3cz95c9mdjhf"; depends=[abind gplots igraph knitr limma rhdf5 TSP]; }; + DonaPLLP2013 = derive2 { name="DonaPLLP2013"; version="1.32.0"; sha256="0dnp01n5lmssb7pxyrgx0ks9cxkb5xk6ni3n5f3l6gc6a0lrv9zz"; depends=[EBImage]; }; + DropletTestFiles = derive2 { name="DropletTestFiles"; version="1.4.0"; sha256="10928x20i84f81ma6wdxkkii1l0pah2wbxvj8ady4gm04s7klvnb"; depends=[AnnotationHub ExperimentHub S4Vectors]; }; + DrugVsDiseasedata = derive2 { name="DrugVsDiseasedata"; version="1.30.0"; sha256="10w2sj29bchry0w4340s48944kxy764wbp680a27jfcw0phwqw1n"; depends=[]; }; + DuoClustering2018 = derive2 { name="DuoClustering2018"; version="1.12.0"; sha256="0x9nlhjfks2n834x9acmcw2hdlpqxw7ac1gqdwiphcdkzwwnpfmy"; depends=[dplyr ExperimentHub ggplot2 ggthemes magrittr mclust purrr reshape2 tidyr viridis]; }; + DvDdata = derive2 { name="DvDdata"; version="1.30.0"; sha256="18as6sqfsfwgry1pm47h716c1nhcjfn82g6r9r3zs5kcvpr4phs7"; depends=[]; }; + EGSEAdata = derive2 { name="EGSEAdata"; version="1.22.0"; sha256="1qzc6ir1w6s2l2kw1mb8l1sxc053f8bp5b9nllybbkpa7ialcz8y"; depends=[]; }; + ELMER_data = derive2 { name="ELMER.data"; version="2.18.0"; sha256="00cnici4cnp5sw8ll9xvx1zw5qkjixyp5zffllw7qxp2q4v709z3"; depends=[GenomicRanges]; }; + EatonEtAlChIPseq = derive2 { name="EatonEtAlChIPseq"; version="0.32.0"; sha256="12b40z3b4h9681zvyxkaycb26y7slgkqhjx2kwn793qaf5bhgabc"; depends=[GenomicRanges rtracklayer ShortRead]; }; + FANTOM3and4CAGE = derive2 { name="FANTOM3and4CAGE"; version="1.30.0"; sha256="1y8q8clhxqyy5zdsnv084jzjaslpzlkl0502i3i7ang7g6xh0f8n"; depends=[]; }; + FIs = derive2 { name="FIs"; version="1.22.0"; sha256="0zj3z7rk88s2jchrdkf6rq3ksnhlzg9h86n38kjyv6qbr6hifgkd"; depends=[]; }; + FieldEffectCrc = derive2 { name="FieldEffectCrc"; version="1.4.0"; sha256="09wphzb2ycp9hlqz5qjmw4r2vwm4fgsjyvcwsvqy0d4k725gkxjd"; depends=[AnnotationHub BiocStyle DESeq2 ExperimentHub RUnit SummarizedExperiment]; }; + Fletcher2013a = derive2 { name="Fletcher2013a"; version="1.30.0"; sha256="0w60h8xcp1rp4lvq87qfqbj0f497jc4w54463wnac6dbph8bsda3"; depends=[Biobase gplots limma VennDiagram]; }; + Fletcher2013b = derive2 { name="Fletcher2013b"; version="1.30.0"; sha256="1fs6h0dmvigzkqn5iqfzq84zz2dv983w5mwj2bwbq3b9iclc30dg"; depends=[Fletcher2013a igraph RColorBrewer RedeR RTN]; }; + FlowSorted_Blood_450k = derive2 { name="FlowSorted.Blood.450k"; version="1.32.0"; sha256="1js5ibv4kcs5q8xwcla6pz5na7ys7f8h59s91djv8l3g8fl5v0c1"; depends=[minfi]; }; + FlowSorted_Blood_EPIC = derive2 { name="FlowSorted.Blood.EPIC"; version="1.12.1"; sha256="0i8mb6cbdh5gnbp38dsk5qsyx50a1dpsnvjl46q6bx1bdfchzfh0"; depends=[ExperimentHub genefilter IlluminaHumanMethylationEPICanno_ilm10b4_hg19 minfi nlme quadprog S4Vectors SummarizedExperiment]; }; + FlowSorted_CordBlood_450k = derive2 { name="FlowSorted.CordBlood.450k"; version="1.22.0"; sha256="0kb380hq9m90jspgccl68hxxvkslxf67isb0w86x6glpsz8q0bgf"; depends=[minfi]; }; + FlowSorted_CordBloodCombined_450k = derive2 { name="FlowSorted.CordBloodCombined.450k"; version="1.10.0"; sha256="0xggjhqkd7j0rfypx5armarmvkhl5a1f7fw0iwygrdg5g4804n3j"; depends=[ExperimentHub FlowSorted_Blood_EPIC IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 minfi SummarizedExperiment]; }; + FlowSorted_CordBloodNorway_450k = derive2 { name="FlowSorted.CordBloodNorway.450k"; version="1.20.0"; sha256="0yqjy03lf2ihvw3r9pz5cz67rr07i8n8n7dnmzvcbvgvjb98g82p"; depends=[minfi]; }; + FlowSorted_DLPFC_450k = derive2 { name="FlowSorted.DLPFC.450k"; version="1.30.0"; sha256="1r98f7zr11xl8jilx9xbk9haq1wy5hfbrlbinf3ky7a7g6sz6b33"; depends=[minfi]; }; + GIGSEAdata = derive2 { name="GIGSEAdata"; version="1.12.0"; sha256="0jq8w6hrdqwlv4ya5z4i67d21yy5ksw2lbcqippvifgqxb5impw0"; depends=[]; }; + GSBenchMark = derive2 { name="GSBenchMark"; version="1.14.0"; sha256="06shm71kd75bhlibpkdhzrc3w9200wb0n7dflism4cndx6q256g5"; depends=[]; }; + GSE103322 = derive2 { name="GSE103322"; version="1.0.0"; sha256="1fr766mrkxw77llcnaxz45rhdxmz9vwnylmwcr0vq6jwz2y20zrh"; depends=[Biobase GEOquery]; }; + GSE13015 = derive2 { name="GSE13015"; version="1.2.0"; sha256="1fa38kgm8jb1xf81m6wsb8g9gfsd2brb2yvfqhb5s8n0bgcwys1w"; depends=[Biobase GEOquery preprocessCore SummarizedExperiment]; }; + GSE159526 = derive2 { name="GSE159526"; version="1.0.0"; sha256="0hk5yb0dzlxkf1mcg1kz6lgwff1vxpswsggmhl2zzz10qyrprb6y"; depends=[]; }; + GSE62944 = derive2 { name="GSE62944"; version="1.22.0"; sha256="17dp87ahfch4jmw1d21s20zr28a0qxnw6ly7r7czis1fxxnc2nhi"; depends=[Biobase GEOquery]; }; + GSVAdata = derive2 { name="GSVAdata"; version="1.30.0"; sha256="1yscdsjjq0dyjgx4mws97z5inxlp68gd37haza7k4q9hrdrg2qyc"; depends=[Biobase GSEABase hgu95a_db]; }; + GWASdata = derive2 { name="GWASdata"; version="1.32.0"; sha256="05inid2ch6c7idyp4awvpfdw867mhnsl2k06k0bw0h8hhwnqpssk"; depends=[GWASTools]; }; + GenomicDistributionsData = derive2 { name="GenomicDistributionsData"; version="1.2.0"; sha256="0kiqhqc9c46l76spc0fws9qrzhs3dyf2n8nhzq2zjbvxpbnm7hk0"; depends=[AnnotationFilter AnnotationHub BSgenome data_table ensembldb ExperimentHub GenomeInfoDb GenomicFeatures GenomicRanges]; }; + GeuvadisTranscriptExpr = derive2 { name="GeuvadisTranscriptExpr"; version="1.22.0"; sha256="0hdpwqbsj4fyg5cbg8zb0gaw1f2w8wxk6b9f3zf6lg3h1grr23p0"; depends=[]; }; + HCAData = derive2 { name="HCAData"; version="1.10.0"; sha256="0l84d13sz6ai87rrv0jvssbvwb8jrrdn6k9l35phxhh78zbl0w1b"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; + HD2013SGI = derive2 { name="HD2013SGI"; version="1.34.0"; sha256="1k7igh15bmcqr1ar3xcpiam7wypvkcazswjs97r44m9ib8xjm93y"; depends=[EBImage geneplotter gplots limma LSD RColorBrewer splots vcd]; }; + HDCytoData = derive2 { name="HDCytoData"; version="1.14.0"; sha256="0n1kk4g1agclpmvxy6mqzmik1d5ba3s7q6w5fsmryxbmdslaqgdr"; depends=[ExperimentHub flowCore SummarizedExperiment]; }; + HEEBOdata = derive2 { name="HEEBOdata"; version="1.32.0"; sha256="1nf388mj6iw8z6kx7vwzvmkqcf2xp3srinh8af0rdj97571rqm19"; depends=[]; }; + HIVcDNAvantWout03 = derive2 { name="HIVcDNAvantWout03"; version="1.34.0"; sha256="12dkiif41ailb9bmclk215s9hrl3xsh7w5m6ms799g4lr21hpm4c"; depends=[]; }; + HMP16SData = derive2 { name="HMP16SData"; version="1.14.0"; sha256="12xq1vvxvv16y9szfs5qzmkpi8v8v67vm6yln3kda43x1wfc1naz"; depends=[AnnotationHub assertthat dplyr ExperimentHub kableExtra knitr magrittr readr S4Vectors stringr SummarizedExperiment tibble]; }; + HMP2Data = derive2 { name="HMP2Data"; version="1.8.0"; sha256="1h4lyxva5hzvdknr7pndq49js0yz62anshaq1apdm3zcga979c2z"; depends=[AnnotationHub assertthat data_table dplyr ExperimentHub kableExtra knitr magrittr MultiAssayExperiment phyloseq readr S4Vectors SummarizedExperiment]; }; + HSMMSingleCell = derive2 { name="HSMMSingleCell"; version="1.14.0"; sha256="0z1iid7q5aj429npfmszhx1na4rbx4kzw47dk4153lq63zapdig9"; depends=[]; }; + HarmanData = derive2 { name="HarmanData"; version="1.22.0"; sha256="0dk8anr68c3p8c88xqpvy3v46vgk2w9zdcw0ikg1593xsdhpzp1k"; depends=[]; }; + HarmonizedTCGAData = derive2 { name="HarmonizedTCGAData"; version="1.16.0"; sha256="1ar9m9qkbxbg0n0acv96am6nsvy7gv85787vp3qhdvdq6cmzf39g"; depends=[ExperimentHub]; }; + HelloRangesData = derive2 { name="HelloRangesData"; version="1.20.0"; sha256="0hrllq2hsd92yax3xs1k1rhq1j1zx7l2aiaaxlw4drds36vi2hlh"; depends=[]; }; + HiCDataHumanIMR90 = derive2 { name="HiCDataHumanIMR90"; version="1.14.0"; sha256="1kcaf2slwrm1s6y29n1za5aadzh7hqmiyb9zq9w5k9inxqhdbmg8"; depends=[]; }; + HiCDataLymphoblast = derive2 { name="HiCDataLymphoblast"; version="1.30.0"; sha256="0xqyjj64sqlh5zynqi56nr2jzc4r558bviqiybgv9zxq1m3pqddg"; depends=[]; }; + HighlyReplicatedRNASeq = derive2 { name="HighlyReplicatedRNASeq"; version="1.6.0"; sha256="059sm5lwx2k3h8p2j07k7vg3p85nbgszpfp7q14c1wc350cm275c"; depends=[ExperimentHub S4Vectors SummarizedExperiment]; }; + Hiiragi2013 = derive2 { name="Hiiragi2013"; version="1.30.0"; sha256="1lyb33rlaciicz6nj4w5jydgvbib9bi45z3676y78dajpvd8gsmb"; depends=[affy Biobase boot clue cluster genefilter geneplotter gplots gtools KEGGREST lattice latticeExtra MASS mouse4302_db RColorBrewer xtable]; }; + HumanAffyData = derive2 { name="HumanAffyData"; version="1.20.0"; sha256="0xvy3vhdi9d944cij15k0yz3gja910kfxrrm29d9m85ga06nzzs1"; depends=[Biobase ExperimentHub]; }; + IHWpaper = derive2 { name="IHWpaper"; version="1.22.0"; sha256="05hppzncnyn8ngr8iy975pmb5y0sq6m1510q8jh3dixwr5vk5zyf"; depends=[Biobase BiocGenerics BiocParallel cowplot DESeq2 dplyr fdrtool genefilter ggplot2 IHW qvalue Rcpp SummarizedExperiment]; }; + ITALICSData = derive2 { name="ITALICSData"; version="2.32.0"; sha256="13psfxkv4wxlk1fhlvilpw5l4k84xc0f97j0hisdmlm9y57km62v"; depends=[]; }; + Illumina450ProbeVariants_db = derive2 { name="Illumina450ProbeVariants.db"; version="1.30.0"; sha256="1g2jrqz32vlvxn5v1p9pzl99b2qjrq9cxv61zl4rip1k3q9zw7mf"; depends=[]; }; + IlluminaDataTestFiles = derive2 { name="IlluminaDataTestFiles"; version="1.32.0"; sha256="19jk28hflhycp2mnic594bymqyv2bdwl88rmpmv6ggdc6z6prcll"; depends=[]; }; + Iyer517 = derive2 { name="Iyer517"; version="1.36.0"; sha256="0j6y5p95qrsbv3i953b5xmannvyaahjpvdpydwwpabxflh1rqkg6"; depends=[Biobase]; }; + JASPAR2014 = derive2 { name="JASPAR2014"; version="1.30.0"; sha256="158lyh9j2vm739a4i5bvwcrnffl30wiz2rra2a12iy75klc8bj77"; depends=[Biostrings]; }; + JASPAR2016 = derive2 { name="JASPAR2016"; version="1.22.0"; sha256="1br7rynmhhxbsdhfxssd8wsa2s5zrsfcirx5lz4mcxjjw9ks0x2q"; depends=[]; }; + KEGGandMetacoreDzPathwaysGEO = derive2 { name="KEGGandMetacoreDzPathwaysGEO"; version="1.14.0"; sha256="1kl3h5adaqapkhx3bv0bg8zm05fkanwgyk8zm31shgan0br4m26p"; depends=[Biobase BiocGenerics]; }; + KEGGdzPathwaysGEO = derive2 { name="KEGGdzPathwaysGEO"; version="1.32.0"; sha256="03zakm4hnzm5bpj1is6idpljqg1sfzldv6i6z9rkg36dahcjkgli"; depends=[Biobase BiocGenerics]; }; + KOdata = derive2 { name="KOdata"; version="1.20.0"; sha256="11ar6bp6j615hcqa8w0dha1d57r8kxwjr0aikmxl3j058yrv2p6m"; depends=[]; }; + LRcellTypeMarkers = derive2 { name="LRcellTypeMarkers"; version="1.2.0"; sha256="0c7nwyskm5kx2z56vr8wb1c8ll8z3z7ywi52s4d1nmhmj9dyzmb3"; depends=[ExperimentHub]; }; + LiebermanAidenHiC2009 = derive2 { name="LiebermanAidenHiC2009"; version="0.32.0"; sha256="1kgydp7x3kdhh5kzwrh9fjc9zfw1jx4bbkgxc46vh1dwz8kbkbch"; depends=[IRanges KernSmooth]; }; + ListerEtAlBSseq = derive2 { name="ListerEtAlBSseq"; version="1.26.0"; sha256="0ag820shlpknc2zbqiwafisbg4hr7paqv3g26ghrvyvbkmqmj1w8"; depends=[methylPipe]; }; + LungCancerACvsSCCGEO = derive2 { name="LungCancerACvsSCCGEO"; version="1.30.0"; sha256="0sfadyna4njvz1dn0z3vhvyykl864534qr200swj4cmsny52bsdh"; depends=[]; }; + LungCancerLines = derive2 { name="LungCancerLines"; version="0.32.0"; sha256="1clsdv7ryk46i7640sj77xnwqqw32aa9gy9g8hvhg4sliiqmgvjw"; depends=[Rsamtools]; }; + M3DExampleData = derive2 { name="M3DExampleData"; version="1.20.0"; sha256="0qnbd53lhfq78k2v9qpkwpcf75mg9asf6765pqq2f0ivi2a4jrjs"; depends=[]; }; + MACSdata = derive2 { name="MACSdata"; version="1.2.0"; sha256="1k9xslk90ikk2jz0apyvqqz5l6cwxca1cbpfzqjg28rk7md44ycx"; depends=[]; }; + MAQCsubset = derive2 { name="MAQCsubset"; version="1.32.0"; sha256="047dbqd3iy2ckxhsm30h2k98krjyjfl453abpw9840jsicpf5ndn"; depends=[affy Biobase lumi]; }; + MAQCsubsetILM = derive2 { name="MAQCsubsetILM"; version="1.32.0"; sha256="182i7jn3i1xf1s4hnpqz3kbvnd5l0dpnqgva1h37l9zah0fjki54"; depends=[Biobase lumi]; }; + MEDIPSData = derive2 { name="MEDIPSData"; version="1.30.0"; sha256="06ip7pcxmn510i1mi3z89bkfcd8k11vmck5xy8bxrs5ck8v7f45k"; depends=[]; }; + MEEBOdata = derive2 { name="MEEBOdata"; version="1.32.0"; sha256="0wig4bsmqn61hj11hzmf44ninx4n1iyvr4y4pp2pzx3aria3gpra"; depends=[]; }; + MIGSAdata = derive2 { name="MIGSAdata"; version="1.18.0"; sha256="1kf16r23v6gvq0w4hkjv8y2rn0nbwssa2p210bs8i3g0rbahyscv"; depends=[]; }; + MMAPPR2data = derive2 { name="MMAPPR2data"; version="1.8.0"; sha256="117shgd11rslc22kw0c5y2a9fs17csr6s101hcbh8rl3x763c3wb"; depends=[Rsamtools]; }; + MMDiffBamSubset = derive2 { name="MMDiffBamSubset"; version="1.30.0"; sha256="1w20fyb2bf7hhq6zyv8jal4lvypm031j2ls9dsc3bsywxwr95ikl"; depends=[]; }; + MOFAdata = derive2 { name="MOFAdata"; version="1.10.0"; sha256="1w0bq94ivm070bna64k6z3jv8y4k5wdqffy47kgdn3ncrhcmwn6q"; depends=[]; }; + MSMB = derive2 { name="MSMB"; version="1.12.0"; sha256="08d4him513am05hsrd3i430cwjqw3qpv35b84kdf87cyfvz0wl1n"; depends=[]; }; + MUGAExampleData = derive2 { name="MUGAExampleData"; version="1.14.0"; sha256="04ca666vaa2kshj98s8kx651pa3lmv1v6m2s22qxv34cj1ky54jl"; depends=[]; }; + MetaGxBreast = derive2 { name="MetaGxBreast"; version="1.14.0"; sha256="08cva4f3cb2mygf7i4b44xnsck75sbxfc05lxih478zcgm6n5v1w"; depends=[AnnotationHub Biobase ExperimentHub impute lattice SummarizedExperiment]; }; + MetaGxOvarian = derive2 { name="MetaGxOvarian"; version="1.14.0"; sha256="1dvzmass9yg53gq26lpv6ic966agbf3y8ci7iq2q3b1ljs3x84af"; depends=[AnnotationHub Biobase ExperimentHub impute lattice SummarizedExperiment]; }; + MetaGxPancreas = derive2 { name="MetaGxPancreas"; version="1.14.0"; sha256="140ypxhn0ibgisa0rwdpn5pcl9zgi10n4fpbr9v2vmllsfvc74rc"; depends=[AnnotationHub ExperimentHub impute S4Vectors SummarizedExperiment]; }; + MethylAidData = derive2 { name="MethylAidData"; version="1.26.0"; sha256="1hdl459vfqaz545nc1yqssxn235rf26isvg9g8zzxm4hbr4jwh5y"; depends=[MethylAid]; }; + MethylSeqData = derive2 { name="MethylSeqData"; version="1.4.0"; sha256="1n347m96hx5mnfwxv82iaxpl5kqamvqgxpw2s7q7b2wywcis3fdq"; depends=[ExperimentHub GenomeInfoDb GenomicRanges HDF5Array IRanges rhdf5 S4Vectors SummarizedExperiment]; }; + MouseGastrulationData = derive2 { name="MouseGastrulationData"; version="1.8.0"; sha256="00yyvm172974ij05h260fd99kk7zjhyli3c7my69x9sfzvnk26xv"; depends=[BiocGenerics BumpyMatrix ExperimentHub S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; + MouseThymusAgeing = derive2 { name="MouseThymusAgeing"; version="1.2.0"; sha256="17hasz0jklv4l8fafllnhkkacrr8c4bbikdcbnfqfxsqy9am7b6q"; depends=[BiocGenerics ExperimentHub S4Vectors SingleCellExperiment SummarizedExperiment]; }; + NCIgraphData = derive2 { name="NCIgraphData"; version="1.30.0"; sha256="12csh0jy8kx7xv14vqsimc3f3vl6ka5j04siq9mwrl026x0jyk95"; depends=[]; }; + NGScopyData = derive2 { name="NGScopyData"; version="1.14.0"; sha256="1plgsrfq8s56f40x0sb9pk2c1pmq4r3qiyjlc8d78a0sd4vn4gxa"; depends=[]; }; + NanoporeRNASeq = derive2 { name="NanoporeRNASeq"; version="1.4.0"; sha256="07vc2xw3d3wjbqm17zpz7sp3jmignk5riwrfqbrpwp3bg77xffg6"; depends=[ExperimentHub]; }; + NestLink = derive2 { name="NestLink"; version="1.10.0"; sha256="014knbyz67sq93gvp3ra5ajsarkb51f0v2rbjbq5qr2zr3xafyj5"; depends=[AnnotationHub Biostrings ExperimentHub gplots protViz ShortRead]; }; + Neve2006 = derive2 { name="Neve2006"; version="0.32.0"; sha256="0hhpcfwpmi3j57w26f4916lv7sj7nrjiffbmfysl5sqsjw0djn89"; depends=[annotate Biobase hgu133a_db]; }; + NxtIRFdata = derive2 { name="NxtIRFdata"; version="1.0.0"; sha256="10y40srz5rq465mhqag2kqz9kpr7qymd41lyyhbc5fvglc8l37js"; depends=[BiocFileCache ExperimentHub R_utils rtracklayer]; }; + OMICsPCAdata = derive2 { name="OMICsPCAdata"; version="1.12.0"; sha256="1l4rmfdcfafh8pyvz8bsl4rm3859c8ckzw9kv2dc82djgk0b2lcq"; depends=[MultiAssayExperiment]; }; + ObMiTi = derive2 { name="ObMiTi"; version="1.2.0"; sha256="131n0q34xizcw21sjrxcf185qfpxfc8m4xypmp812151f886p405"; depends=[ExperimentHub SummarizedExperiment]; }; + OnassisJavaLibs = derive2 { name="OnassisJavaLibs"; version="1.16.0"; sha256="0hw0djfc8bfk51np4x7ik8nr2dscn5wd7gvbr0564yfz2ilf8l6v"; depends=[rJava]; }; + PCHiCdata = derive2 { name="PCHiCdata"; version="1.22.0"; sha256="0hk7fwh456xmlfgdgp6wsdn38v1g8b18f28f0wswgxxg1hy4mhih"; depends=[Chicago]; }; + PREDAsampledata = derive2 { name="PREDAsampledata"; version="0.34.0"; sha256="1gkjsh0xyn27jrxldkcgyvwpa2b2l81k96j2cls3y4dm9r39g637"; depends=[affy annotate Biobase PREDA]; }; + PWMEnrich_Dmelanogaster_background = derive2 { name="PWMEnrich.Dmelanogaster.background"; version="4.28.0"; sha256="0fagxhzqr2ri1w93yr7ch1x9d55q8305cfj62gcxkzpi61j8nx1y"; depends=[PWMEnrich]; }; + PWMEnrich_Hsapiens_background = derive2 { name="PWMEnrich.Hsapiens.background"; version="4.28.0"; sha256="1pmij8f40ly40prcmcjb7xfd5fpw14s77wvf1nn2vnvq7v232zva"; depends=[PWMEnrich]; }; + PWMEnrich_Mmusculus_background = derive2 { name="PWMEnrich.Mmusculus.background"; version="4.28.0"; sha256="148ygn4ak50v6kfznvrbklkr09vl117091vggmc0hzc596w4dnmr"; depends=[PWMEnrich]; }; + PasillaTranscriptExpr = derive2 { name="PasillaTranscriptExpr"; version="1.22.0"; sha256="0x71whs9m2pr5fcihqql6fkaargpqfr8qkr7z7fqdwbblklzn145"; depends=[]; }; + PathNetData = derive2 { name="PathNetData"; version="1.30.0"; sha256="002qx6p1vh066c2vq4dir7xvgga8nm824x59nv5gmjj65wmlg62m"; depends=[]; }; + PepsNMRData = derive2 { name="PepsNMRData"; version="1.12.0"; sha256="0d4539bm507dm6v2knavacidlwsb5rhr22bb48szfcr5kbn5vk1p"; depends=[]; }; + PhyloProfileData = derive2 { name="PhyloProfileData"; version="1.8.0"; sha256="0j6c301zknfvk9pkz8n3f4ckgxpfk2v4vnad1gv7vmaxz4bwnia8"; depends=[BiocStyle Biostrings ExperimentHub]; }; + ProData = derive2 { name="ProData"; version="1.32.0"; sha256="0k870xnl35x8a5y2kzfkvasabanpmad1f0vmb2waax9h42y2bmdx"; depends=[Biobase]; }; + PtH2O2lipids = derive2 { name="PtH2O2lipids"; version="1.20.0"; sha256="1mz5w6yb82s91qi8q5d14pvzq8vlpxlnvkr8mv9q4wbmq6m3rwk6"; depends=[CAMERA LOBSTAHS xcms]; }; + QDNAseq_hg19 = derive2 { name="QDNAseq.hg19"; version="1.24.0"; sha256="1b4d0936lrjn7jp9g9gj3jnkfrw7vw79j15xpyr8d3kqsrkn3j0q"; depends=[QDNAseq]; }; + QDNAseq_mm10 = derive2 { name="QDNAseq.mm10"; version="1.24.0"; sha256="1iamvkpj5gij2x7j3fixgn3djgly684wrvr888w9cfir6wf5pk94"; depends=[QDNAseq]; }; + QUBICdata = derive2 { name="QUBICdata"; version="1.22.0"; sha256="15saydq9vv1lvqgvv5d51km52aqzwjx7q7ijpka6why442lrys9r"; depends=[]; }; + RGMQLlib = derive2 { name="RGMQLlib"; version="1.14.0"; sha256="0l317dma9cnwhr24k65lhs26n1511chiq8fp0xx4bnxzvw3q7g5b"; depends=[]; }; + RITANdata = derive2 { name="RITANdata"; version="1.18.0"; sha256="0jpw3lsm7npwn44j7ydi2630qmkjymm1hm2hv73gfk464zr40xf4"; depends=[]; }; + RLHub = derive2 { name="RLHub"; version="1.0.0"; sha256="1i3i1dp5b04xmkgz6lf3fdk0bag23as4f42pcqncalxavgf3c3vm"; depends=[AnnotationHub ExperimentHub]; }; + RMassBankData = derive2 { name="RMassBankData"; version="1.32.0"; sha256="1m268dd3wl92l3vihqijcxy1iif7qw3i3vlqhjq18qmc11i55qp2"; depends=[]; }; + RNASeqRData = derive2 { name="RNASeqRData"; version="1.12.0"; sha256="0546d7p29vra6n54ffnjxz0ajb9ih90m01xx3b9p56v2s4x0wia4"; depends=[]; }; + RNAinteractMAPK = derive2 { name="RNAinteractMAPK"; version="1.32.0"; sha256="0gcvhqpb0h0d0p2rr4vnh24a2flc4m502gyqb0gikk1sfd4jf6jz"; depends=[Biobase fields gdata genefilter lattice MASS RNAinteract sparseLDA]; }; + RNAmodR_Data = derive2 { name="RNAmodR.Data"; version="1.8.0"; sha256="1zinj1m27khxmm6qwdl6zmydw505df2lsdfh4hfrnrp0yhwhp0g0"; depends=[ExperimentHub ExperimentHubData]; }; + RNAseqData_HNRNPC_bam_chr14 = derive2 { name="RNAseqData.HNRNPC.bam.chr14"; version="0.32.0"; sha256="1bgz3i5x0f3940dk4nynxd4r5ji79rs81fwz9iq8br8srssdb4bg"; depends=[]; }; + RRBSdata = derive2 { name="RRBSdata"; version="1.14.0"; sha256="19k7dlllf77ymn84zh22qiv1xhjv6k5i6ss9fa1w7slps17k8l1g"; depends=[BiSeq]; }; + RTCGA_CNV = derive2 { name="RTCGA.CNV"; version="1.22.0"; sha256="0884c8idabmpz8jyz1gpvayv2h9i164642pnk5n8a68g8djad9zd"; depends=[RTCGA]; }; + RTCGA_PANCAN12 = derive2 { name="RTCGA.PANCAN12"; version="1.22.0"; sha256="1daqpw0vipdagrr7p6q4h6plfa7dwk6nj421s9wa78wm8rda70s7"; depends=[RTCGA]; }; + RTCGA_RPPA = derive2 { name="RTCGA.RPPA"; version="1.22.0"; sha256="0vi7kryzxj42n21xa0nmnjxyskqdqv5fmgh2bjj4fx9al4jqc4n2"; depends=[RTCGA]; }; + RTCGA_clinical = derive2 { name="RTCGA.clinical"; version="20151101.24.0"; sha256="03d8b7pp2dpr07bjx952d9m6x8nn267dl9qa368gh0pv8vcwjmj9"; depends=[RTCGA]; }; + RTCGA_mRNA = derive2 { name="RTCGA.mRNA"; version="1.22.0"; sha256="0ivlp5izz9rls5347lkdl6cc8q94y2s24hxbla49p514pb959pwv"; depends=[RTCGA]; }; + RTCGA_methylation = derive2 { name="RTCGA.methylation"; version="1.22.0"; sha256="0c547sp6kpzx0s1321y61fr09r420j6sc08qd4v0jp9nd10j1mv7"; depends=[RTCGA]; }; + RTCGA_miRNASeq = derive2 { name="RTCGA.miRNASeq"; version="1.22.0"; sha256="1qlnlhki58j82mz8yv4nd334xgkcq4h4hk51ma9q7fc28ssbnfwp"; depends=[RTCGA]; }; + RTCGA_mutations = derive2 { name="RTCGA.mutations"; version="20151101.24.0"; sha256="0diaxx1484nq4avmsvqs7w0dcpy36kjllklr9wx4r9zmmw098yyg"; depends=[RTCGA]; }; + RTCGA_rnaseq = derive2 { name="RTCGA.rnaseq"; version="20151101.24.0"; sha256="09hr3fm8yrdyhzfrwxk59y2fdl2yg449v0na0i6im9as38zki9zb"; depends=[RTCGA]; }; + RUVnormalizeData = derive2 { name="RUVnormalizeData"; version="1.14.0"; sha256="1i5hd120jc6h23vxaf5pylnji1jig9ryml1hqrrldw7wnr6iqcl5"; depends=[Biobase]; }; + RcisTarget_hg19_motifDBs_cisbpOnly_500bp = derive2 { name="RcisTarget.hg19.motifDBs.cisbpOnly.500bp"; version="1.14.0"; sha256="06isc22wgwynrx9y55fkaqw6240866k400n8dfmn4pdrx3zwzhra"; depends=[data_table]; }; + ReactomeGSA_data = derive2 { name="ReactomeGSA.data"; version="1.8.0"; sha256="1gpy8hbib6zldi5pwmdiqfy1pg5b4i0s6hv8x41cbryvmgx718bx"; depends=[edgeR limma ReactomeGSA Seurat]; }; + RegParallel = derive2 { name="RegParallel"; version="1.12.0"; sha256="1px5j2i7gdsb2ccx556knx4dyr7wibvspgi28ja4qlsb9gn4xnin"; depends=[arm data_table doParallel foreach iterators stringr survival]; }; + RforProteomics = derive2 { name="RforProteomics"; version="1.31.1"; sha256="1lb990amjy4246v3dy75bby3xbr3as017bi0zbrqda168cm8h5af"; depends=[BiocManager biocViews MSnbase R_utils]; }; + RnBeads_hg19 = derive2 { name="RnBeads.hg19"; version="1.26.0"; sha256="1r9hac14p4a0696v7n4vvxfnmsp6snvwyh0gz6h2ch7cdnp2ny0d"; depends=[GenomicRanges]; }; + RnBeads_hg38 = derive2 { name="RnBeads.hg38"; version="1.26.0"; sha256="0kcqa4zhb8i5104p1qyfdp4h50x60vns4dzr663vyhkcm7y8phhg"; depends=[GenomicRanges]; }; + RnBeads_mm10 = derive2 { name="RnBeads.mm10"; version="2.2.0"; sha256="06g1ys8daxjjry0zbdhilip529zamj99ing1impxnnr2kv1s3as2"; depends=[GenomicRanges]; }; + RnBeads_mm9 = derive2 { name="RnBeads.mm9"; version="1.26.0"; sha256="1m7fvapwqaqfz7sjvapb4s7glcnpf35cxdg4gwi4qpjz3qq6fn95"; depends=[GenomicRanges]; }; + RnBeads_rn5 = derive2 { name="RnBeads.rn5"; version="1.26.0"; sha256="1maywqb83036rjw7c6y14vcmlk0kimh54wkjvv1chqkf61a41wyh"; depends=[GenomicRanges]; }; + RnaSeqSampleSizeData = derive2 { name="RnaSeqSampleSizeData"; version="1.26.0"; sha256="029qlllnvi63jkxj8fhqzp02sl5cay2n046a1ghnwrbjf8ax3qby"; depends=[edgeR]; }; + SBGNview_data = derive2 { name="SBGNview.data"; version="1.8.0"; sha256="1xcicqsyvvgb3bwxzw6pw0xvrhrvswjp5piqmkdqv1d747mci58b"; depends=[bookdown knitr rmarkdown]; }; + SCATEData = derive2 { name="SCATEData"; version="1.4.0"; sha256="1zaysac53dv4q2w93bdmmnva5p4h63bp752h3kgik91p77i8vg95"; depends=[ExperimentHub GenomicAlignments GenomicRanges]; }; + SCLCBam = derive2 { name="SCLCBam"; version="1.26.0"; sha256="087ypaaqb4a44jk6fqnh8z4i45384zr6riv22z1kwcx3fpybc5zx"; depends=[]; }; + SNAData = derive2 { name="SNAData"; version="1.40.0"; sha256="1ng54ccaarbsfqak4gvx680rfpskp90ravif0n0iminqmfm596sg"; depends=[graph]; }; + SNAGEEdata = derive2 { name="SNAGEEdata"; version="1.30.0"; sha256="0piqsm9mbiqaf9i0ljj64brm7qdyp7zzhxd8qm3xja0hmh69gigx"; depends=[]; }; + SNPhoodData = derive2 { name="SNPhoodData"; version="1.24.0"; sha256="1x9xxg9dmmphwdm6is2hv3awk9cl9hff8zw2nvjngi2iwxdw5sys"; depends=[]; }; + STexampleData = derive2 { name="STexampleData"; version="1.2.0"; sha256="1xiw6g9aidgppbsn9rsh9ckacrz8sym0j5ink7rv6pwirjnymc27"; depends=[ExperimentHub SpatialExperiment]; }; + SVM2CRMdata = derive2 { name="SVM2CRMdata"; version="1.26.0"; sha256="0k6zznv9ai9ib011yq48zzpdk8qik5ms9388dcw4k90zirnmd4ii"; depends=[]; }; + SimBenchData = derive2 { name="SimBenchData"; version="1.2.0"; sha256="01k5p00lrczk7xww7xkj880aj5x14sgwbvgl7gmqrzqw69x0d3ns"; depends=[ExperimentHub S4Vectors]; }; + Single_mTEC_Transcriptomes = derive2 { name="Single.mTEC.Transcriptomes"; version="1.22.0"; sha256="0vgf7pl31vdmn5wbm7jhbbhv46bi3p1fb1cgzi2lnzg1m5y117wd"; depends=[]; }; + SingleCellMultiModal = derive2 { name="SingleCellMultiModal"; version="1.6.0"; sha256="1gbf52bs87ypszhj7a6v7ggbqznbfj77p0xy17aygnqlpg1rls43"; depends=[AnnotationHub BiocFileCache BiocGenerics ExperimentHub HDF5Array Matrix MultiAssayExperiment S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; + SingleMoleculeFootprintingData = derive2 { name="SingleMoleculeFootprintingData"; version="1.2.0"; sha256="1knajc7bjiylbkdz97vcs0m7m9m2yvzp6pilglkxnrrqjc9r2d86"; depends=[ExperimentHub]; }; + SomatiCAData = derive2 { name="SomatiCAData"; version="1.32.0"; sha256="0x5ygnc4bgqqwap1919hw69hmy3d3r5svyssihrhqp9a3jp55yag"; depends=[]; }; + SomaticCancerAlterations = derive2 { name="SomaticCancerAlterations"; version="1.30.0"; sha256="0wwphjr94kavb45xhsjfhqcyjisanl511in4kn3din1m291xsl3m"; depends=[GenomicRanges IRanges S4Vectors]; }; + SpikeIn = derive2 { name="SpikeIn"; version="1.36.0"; sha256="1z04cqp2p445zdnhkblyy4lk0flmq1x1ir32sqn1kds1nkmv0ws8"; depends=[affy]; }; + SpikeInSubset = derive2 { name="SpikeInSubset"; version="1.34.0"; sha256="0adzr1072rr2zbwmhzg6h3m00w4dxpz9c3f24hj6gf6w9gzk79a7"; depends=[affy Biobase]; }; + TBX20BamSubset = derive2 { name="TBX20BamSubset"; version="1.30.0"; sha256="1y1dgnqa3f80x8j8pw02dd4zb40q86v1qp7102lkhnppvb3b3f2j"; depends=[Rsamtools xtable]; }; + TCGAMethylation450k = derive2 { name="TCGAMethylation450k"; version="1.30.0"; sha256="1qymmnvpic4nz93079r5kxb9yi7y6qcjq39rz5mmcp15q73lpfqk"; depends=[]; }; + TCGAWorkflowData = derive2 { name="TCGAWorkflowData"; version="1.18.0"; sha256="17iq6g93bxzzgsv255ab68crcr5haim57fxx6shjy8ww2ab6522k"; depends=[SummarizedExperiment]; }; + TCGAbiolinksGUI_data = derive2 { name="TCGAbiolinksGUI.data"; version="1.14.0"; sha256="08zmlvycq3jz1zy0715x9f21nf3465c51k7w2jq12sfbap36pmjm"; depends=[]; }; + TCGAcrcmRNA = derive2 { name="TCGAcrcmRNA"; version="1.14.0"; sha256="09ccilwf4kvwgaglk5ar5b6c7pyh3b21r0vg6ibb57ilbv85srqd"; depends=[Biobase]; }; + TCGAcrcmiRNA = derive2 { name="TCGAcrcmiRNA"; version="1.14.0"; sha256="0njs301kfbchhcy4i8ldlpv7z9lsj4hm1ivb4w2r75qkaalmgi7s"; depends=[Biobase]; }; + TENxBUSData = derive2 { name="TENxBUSData"; version="1.8.0"; sha256="1smvgqym0jd5m3as8pjyl9dhnfbh02sdh2sxb2hr89133fh6mx6a"; depends=[AnnotationHub BiocGenerics ExperimentHub]; }; + TENxBrainData = derive2 { name="TENxBrainData"; version="1.14.0"; sha256="1fhhsrariacvd63ngvs348q6cvp4kmjfjzsl2k3a4r8ci3y4snzc"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; + TENxPBMCData = derive2 { name="TENxPBMCData"; version="1.12.0"; sha256="0gb6ji84zk2shz4y10mcccvamz7840qm21nsw8pczq90g0x2vz1g"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; + TENxVisiumData = derive2 { name="TENxVisiumData"; version="1.2.0"; sha256="175mnl0axzhvfp49g4hwplcr0p064yzh77wn30z8m738ckkwz5gr"; depends=[ExperimentHub SpatialExperiment]; }; + TMExplorer = derive2 { name="TMExplorer"; version="1.4.0"; sha256="0l5rs379mg5nwqbfv1kpgqbwjbym82g0wq3354fcvp6w91bskspz"; depends=[BiocFileCache Matrix SingleCellExperiment]; }; + TabulaMurisData = derive2 { name="TabulaMurisData"; version="1.12.0"; sha256="1ncv97h21w9qy7gqz25wsayq6y01siaxc5cll4c8r0nsh3hprnjc"; depends=[ExperimentHub]; }; + TabulaMurisSenisData = derive2 { name="TabulaMurisSenisData"; version="1.0.0"; sha256="1apwhg418s3vmqk28smj2ac54dzbayvn9bd8pn5gnqijcziy6j6h"; depends=[AnnotationHub ExperimentHub gdata HDF5Array SingleCellExperiment SummarizedExperiment]; }; + TargetScoreData = derive2 { name="TargetScoreData"; version="1.30.0"; sha256="11j7nc0k86qk3jgqhiarwawlzih86s8xdsiwllsnrp8i3ddwfq8x"; depends=[]; }; + TargetSearchData = derive2 { name="TargetSearchData"; version="1.32.0"; sha256="11gs90jl3z95b2pp2v2lgfibk0hmkkp6waf9pnhw68kp38iv1n7w"; depends=[]; }; + TimerQuant = derive2 { name="TimerQuant"; version="1.24.0"; sha256="1phyxfdljbx6k7l2lmrzs764yx1y9w4hj415zzpqs3i8skf83pf2"; depends=[deSolve dplyr ggplot2 gridExtra locfit shiny]; }; + VariantToolsData = derive2 { name="VariantToolsData"; version="1.18.0"; sha256="0xa3bwjf255ff65fphxn0mn39j1f6f5k8snpbwy0qrrcv6a5ksky"; depends=[BiocGenerics GenomicRanges VariantAnnotation]; }; + WES_1KG_WUGSC = derive2 { name="WES.1KG.WUGSC"; version="1.26.0"; sha256="0857mgrscvdi4r6bzijb411vjh9nprgi0vda3b14rh2kz5py8y5k"; depends=[]; }; + WGSmapp = derive2 { name="WGSmapp"; version="1.6.0"; sha256="0vzpvhz4s68jdjpli6pl18y804wdcc1xb8d1lz0lywg2shf2vfhf"; depends=[GenomicRanges]; }; + XhybCasneuf = derive2 { name="XhybCasneuf"; version="1.32.0"; sha256="1xj5sdqvp9zfgk5hk2zqr5jjfym6zv7h94j1kir11pbxy9h4j2i9"; depends=[affy ath1121501cdf RColorBrewer tinesath1cdf]; }; + adductData = derive2 { name="adductData"; version="1.10.0"; sha256="0bp74p06gskwn2xl1srpnmsq27ajsrlynkzw6fcmvwwjcrzljmnj"; depends=[AnnotationHub ExperimentHub]; }; + affycompData = derive2 { name="affycompData"; version="1.32.0"; sha256="1f4c57clh0xzsj3vvx7bv0hdjgj7fj4zfzxbm0cavmp6khvgd6ng"; depends=[affycomp Biobase]; }; + affydata = derive2 { name="affydata"; version="1.42.0"; sha256="184zrqgl0hnzqshjjpzqb41nry6c7sxqkj4lxn8217444pqq8i94"; depends=[affy]; }; + airway = derive2 { name="airway"; version="1.14.0"; sha256="16g8lcmdj57i4ggnq2kwklpnl53dwgwkajnzkkl0p3473zcxqihs"; depends=[SummarizedExperiment]; }; + alpineData = derive2 { name="alpineData"; version="1.20.0"; sha256="0lbk3b4jnbhk1xbxzs7liz03gq05d3vsy762wm299gdqwhd1c2rq"; depends=[AnnotationHub ExperimentHub GenomicAlignments]; }; + antiProfilesData = derive2 { name="antiProfilesData"; version="1.30.0"; sha256="1bizxdj5jamf5vby1rswplljnffay2zvz85gd8prr838z22c8sb7"; depends=[Biobase]; }; + aracne_networks = derive2 { name="aracne.networks"; version="1.20.0"; sha256="1h0f1n8cr3pfrnv2v37b1xlmqv603qdgc886w25vdgkplkm2i00b"; depends=[viper]; }; + bcellViper = derive2 { name="bcellViper"; version="1.30.0"; sha256="1x55zqb3vbgkz608vw41h75yj76xim235vnzn4n7kk13ysfagk3g"; depends=[Biobase]; }; + beadarrayExampleData = derive2 { name="beadarrayExampleData"; version="1.32.0"; sha256="1k9b6f9qr9w2fzlid53ij8v1ribyxa46r3wagyrdpspz0lw1chgl"; depends=[beadarray Biobase]; }; + benchmarkfdrData2019 = derive2 { name="benchmarkfdrData2019"; version="1.8.0"; sha256="1434pf9jrgjpvx1rd50zi8010rzd3kdlj7ryvp1q6ivw9r90mq6j"; depends=[ExperimentHub SummarizedExperiment]; }; + beta7 = derive2 { name="beta7"; version="1.32.0"; sha256="0m2mq9slb1yqjhk5y4sqclhm92j7q0a1rkh290j73ql2x90acb5y"; depends=[marray]; }; + biotmleData = derive2 { name="biotmleData"; version="1.18.0"; sha256="1hsabj556jsiq3g466fqwq4lfy01bh3riv0c9jms43gd0l414ic8"; depends=[]; }; + biscuiteerData = derive2 { name="biscuiteerData"; version="1.8.0"; sha256="19j4g8fvfmfb3x6bpbx5cs3ad8pv263ga8p9rj266s5dla5yi8jz"; depends=[AnnotationHub curl ExperimentHub]; }; + bladderbatch = derive2 { name="bladderbatch"; version="1.32.0"; sha256="1lrx5qx8kj0dzpcqm8091px8zj3snkbjlpwdckyhvf10iyw4mjxy"; depends=[Biobase]; }; + blimaTestingData = derive2 { name="blimaTestingData"; version="1.14.0"; sha256="1dx475m12nb010c56h7iadb6g2b1xgvd6q0mqjkp3sqsfgv27cfn"; depends=[]; }; + bodymapRat = derive2 { name="bodymapRat"; version="1.10.0"; sha256="1zn08w81pyyd19hrgylzpif7rw7n7qny1bccl566sqc80dqhavgb"; depends=[ExperimentHub SummarizedExperiment]; }; + brainImageRdata = derive2 { name="brainImageRdata"; version="1.12.0"; sha256="072x7yn1ambf6hfpir6qdxl8bybv64blpbi1jdp0bvqlk66zs7zv"; depends=[ExperimentHub]; }; + breakpointRdata = derive2 { name="breakpointRdata"; version="1.12.0"; sha256="1iqi64hqj15llx97jlcj3c9ck56pjnndf3yl94pydrwx3p04573a"; depends=[]; }; + breastCancerMAINZ = derive2 { name="breastCancerMAINZ"; version="1.32.0"; sha256="0zd05zj1d932llj3a08drv4gqg9s3d06c9jks0pag883sfsq91jb"; depends=[]; }; + breastCancerNKI = derive2 { name="breastCancerNKI"; version="1.32.0"; sha256="0xp2s5rhm443lgwj13nwdq2mp88nkr0lizm3k640fm9h8x3xg5pz"; depends=[]; }; + breastCancerTRANSBIG = derive2 { name="breastCancerTRANSBIG"; version="1.32.0"; sha256="028ldqaxcw1lgyw1c5jd01jflcfc2bdb2ibvh1yvqnd16v8gpk2h"; depends=[]; }; + breastCancerUNT = derive2 { name="breastCancerUNT"; version="1.32.0"; sha256="04bj9mhhx9pcv5khb6n3zym11iga2vbz24yvk5k3bkqad7rsmi3b"; depends=[]; }; + breastCancerUPP = derive2 { name="breastCancerUPP"; version="1.32.0"; sha256="0x5nj8mbg8nhpbys20ciqsi6hqd46la4zswwvqxpcivd3ksgkbq7"; depends=[]; }; + breastCancerVDX = derive2 { name="breastCancerVDX"; version="1.32.0"; sha256="04wwicmwp8n5lsb0inq97kvg9dv2yw83mb1ampw4vhgrb4adziv8"; depends=[]; }; + brgedata = derive2 { name="brgedata"; version="1.16.0"; sha256="0q9f3bgfnrw6pbwdpx8ya4p6wy3yn3r6p6vbamvfrj5xprnqp06s"; depends=[Biobase SummarizedExperiment]; }; + bronchialIL13 = derive2 { name="bronchialIL13"; version="1.32.0"; sha256="0fdpx3h699jwr81mddjxn0nlv726y6mbjyn6rglq8g9z07z85agk"; depends=[affy]; }; + bsseqData = derive2 { name="bsseqData"; version="0.32.0"; sha256="0yvb8978nxx87x3pc8rhsxvaii08mkfd01x98mx20p8na7r79ckr"; depends=[bsseq]; }; + cMap2data = derive2 { name="cMap2data"; version="1.30.0"; sha256="15va9h1q97xaqxsfd63m011fclfw6g5sq4va8x3k8w57ljvxpfzm"; depends=[]; }; + cancerdata = derive2 { name="cancerdata"; version="1.32.0"; sha256="0bp4gpqcc1w7rhifmq7540k3pds3l9g1qzd3kdklp23f2y5wn9dd"; depends=[Biobase]; }; + ccTutorial = derive2 { name="ccTutorial"; version="1.32.0"; sha256="1rs2pwipw1nblgybkzrhjsgb69ffzn6b6vnv8pq3svasy1dwn32f"; depends=[affy Biobase Ringo topGO]; }; + ccdata = derive2 { name="ccdata"; version="1.20.0"; sha256="0s6n8dv91p3g44j7nhsfjyqzbga4akfsr574abdwmkwyz13b37qd"; depends=[]; }; + celarefData = derive2 { name="celarefData"; version="1.12.0"; sha256="0vhkhb2i1n62shg608q8k6frraynmxghz1kp961v7fca4lww1i96"; depends=[]; }; + celldex = derive2 { name="celldex"; version="1.4.0"; sha256="04w60fx3s3wlirmr65nsz6d7ig48j9fzimdr8kbdqv1g80ivdcq1"; depends=[AnnotationDbi AnnotationHub DelayedArray DelayedMatrixStats ExperimentHub S4Vectors SummarizedExperiment]; }; + chipenrich_data = derive2 { name="chipenrich.data"; version="2.18.0"; sha256="1x400szark90jzfnr1fp7z956vp0bbnhgc5njzmigqw213fb0647"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicRanges IRanges readr rtracklayer S4Vectors]; }; + chipseqDBData = derive2 { name="chipseqDBData"; version="1.10.0"; sha256="1lv02yn8v3l4h0775dqsbbadv6iv7ln7i58x042avlww2rf3lkp5"; depends=[AnnotationHub ExperimentHub Rsamtools S4Vectors]; }; + chromstaRData = derive2 { name="chromstaRData"; version="1.20.0"; sha256="0bpbnsfs44pdwjsgf3vmkgsq0mz46rx13j1d6g69z4yv00m5kp7j"; depends=[]; }; + clustifyrdatahub = derive2 { name="clustifyrdatahub"; version="1.4.0"; sha256="1wm0mlzs3k88zqjhz9wg846ngffgvs72s2ixmp3kwpdm4gk1jx3y"; depends=[ExperimentHub]; }; + cnvGSAdata = derive2 { name="cnvGSAdata"; version="1.30.0"; sha256="1k6qicydhd81wasvw27gp2p25pcrbfpp6g3aiyvdplaijch5a9nm"; depends=[cnvGSA]; }; + colonCA = derive2 { name="colonCA"; version="1.36.0"; sha256="052gp2a1gfg1rv6zv3n1qw57ky6l6ilyfim6jlj0g08x1rh8mbhq"; depends=[Biobase]; }; + curatedAdipoArray = derive2 { name="curatedAdipoArray"; version="1.6.0"; sha256="0myaa4n9zslv737q2zk0hhr3cfi18zkvh3xrg29xvq40l7jwd95s"; depends=[]; }; + curatedAdipoChIP = derive2 { name="curatedAdipoChIP"; version="1.10.0"; sha256="1mwjw585vn8malbanidvk30gwd5057358ak3669akikxf6wna9cj"; depends=[ExperimentHub SummarizedExperiment]; }; + curatedAdipoRNA = derive2 { name="curatedAdipoRNA"; version="1.10.0"; sha256="0k3hhcfs484hxm0jixgs4q29jq9vk90s2zdz2m23inmn8cxv6d5b"; depends=[SummarizedExperiment]; }; + curatedBladderData = derive2 { name="curatedBladderData"; version="1.30.0"; sha256="0jv7aflam2gfzj8snf7dly26zq9c6gj764zb6fk0z9lb8wk4arxg"; depends=[affy]; }; + curatedBreastData = derive2 { name="curatedBreastData"; version="2.22.0"; sha256="0jnjhlw3b27521jmbbq4m0lq388m1g09lfhqfri3hbvrayk19pn6"; depends=[Biobase BiocStyle ggplot2 impute XML]; }; + curatedCRCData = derive2 { name="curatedCRCData"; version="2.26.0"; sha256="0gpkfff5k4mh96d6q5s2iwba7pfkp5wjl3nxhg3sm0vryrj0w8s0"; depends=[BiocGenerics nlme]; }; + curatedMetagenomicData = derive2 { name="curatedMetagenomicData"; version="3.2.0"; sha256="1k4fjpmgs7dfvf7bkzyb9lmzmw7jj8ayc2y3nbskap6l1xl5qpxb"; depends=[AnnotationHub dplyr ExperimentHub magrittr mia purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr tidyselect TreeSummarizedExperiment]; }; + curatedOvarianData = derive2 { name="curatedOvarianData"; version="1.32.0"; sha256="171m6j6wq5w7n68xzjf34shqhw1360cmzfh5q2al71jsh8lrw77x"; depends=[affy BiocGenerics]; }; + curatedTBData = derive2 { name="curatedTBData"; version="1.0.0"; sha256="0cbs8pkr4zlpvdmq1zsxyh47lkbgpf0ppbv8y653arryb4knficl"; depends=[AnnotationHub ExperimentHub MultiAssayExperiment rlang]; }; + curatedTCGAData = derive2 { name="curatedTCGAData"; version="1.16.0"; sha256="0d7id11liv55xj0n8gk0587p6kjwm5k22jgwf1f107y81zigpi3n"; depends=[AnnotationHub ExperimentHub HDF5Array MultiAssayExperiment S4Vectors SummarizedExperiment]; }; + davidTiling = derive2 { name="davidTiling"; version="1.34.0"; sha256="1az64q1vcgp2rwlpv79bhz3xjjki07n5x6jc12i5ladxlxb1zrwy"; depends=[Biobase GO_db tilingArray]; }; + depmap = derive2 { name="depmap"; version="1.8.0"; sha256="17zwkbndf1fa8sb5lc500l4s7f8x0zq6si8yb8i28bpk5hvdz737"; depends=[AnnotationHub dplyr ExperimentHub]; }; + derfinderData = derive2 { name="derfinderData"; version="2.12.0"; sha256="1i8k7yjkkqv7j2qxh46377acgw2zlf7az4fh0v4gl80c1iplzq2j"; depends=[]; }; + diffloopdata = derive2 { name="diffloopdata"; version="1.22.0"; sha256="1nhyjbbdspw11kms4hh4bmwa9m91zl1lwxjp20q6nqdb7vr57ra5"; depends=[]; }; + diggitdata = derive2 { name="diggitdata"; version="1.26.0"; sha256="04q8n0fap7hasfxnhc0gc4118jsch01j2j614j6dx19frc1g96v4"; depends=[Biobase viper]; }; + dorothea = derive2 { name="dorothea"; version="1.6.0"; sha256="1a5nyxbjrd61mbbrpms8whh4v3qjch21xqf98ahaj5ikpsr1fs7i"; depends=[bcellViper dplyr magrittr viper]; }; + dressCheck = derive2 { name="dressCheck"; version="0.32.0"; sha256="12s2cd770n229wxa3gnpyxw299xk8s774wfi9mx0h4r65cvj900d"; depends=[Biobase]; }; + dyebiasexamples = derive2 { name="dyebiasexamples"; version="1.34.0"; sha256="0cp1l68y79qppnzzs11n57f0hasbyla5prc9nr52iqng4fb0y8ww"; depends=[GEOquery marray]; }; + easierData = derive2 { name="easierData"; version="1.0.0"; sha256="05hcnfh3nhkg14fpgzk254472xhxahni4kfmf7xj4pa13yzkvjnl"; depends=[AnnotationHub ExperimentHub SummarizedExperiment]; }; + ecoliLeucine = derive2 { name="ecoliLeucine"; version="1.34.0"; sha256="17l82v618s2mar3j6xrp7y8glh1j2akw26m0jgagnx5ixl4mf7pl"; depends=[affy ecolicdf]; }; + emtdata = derive2 { name="emtdata"; version="1.2.0"; sha256="0s5ki8pywcz72gj1gxc3y060sajl748yc4cxqspa1lbln73w3a5z"; depends=[edgeR ExperimentHub SummarizedExperiment]; }; + estrogen = derive2 { name="estrogen"; version="1.40.0"; sha256="0r6s17wbpy1s5pzvh1z40k6kmy6fcf8c42lvhsrhjzh1vi0ngk2v"; depends=[]; }; + etec16s = derive2 { name="etec16s"; version="1.22.0"; sha256="14m5nhni0jmbpvhnqgip1ck4av3vh5fr88213mlfa2x4bnvghpyy"; depends=[Biobase metagenomeSeq]; }; + ewceData = derive2 { name="ewceData"; version="1.2.0"; sha256="1hjmgnadwh5ikp92c390nwplvhgj08zam65lakznsjmkzigfx18a"; depends=[ExperimentHub]; }; + faahKO = derive2 { name="faahKO"; version="1.34.0"; sha256="0mj2igvbydfj0zgqyf1vvj3p7xd79h3rq4cczq1hllv9nrlkw8ag"; depends=[xcms]; }; + fabiaData = derive2 { name="fabiaData"; version="1.32.0"; sha256="09hsf5kf4fniy4a4kir8k9f8kvvs28d9vzaspjdbgiyh7hqfdw52"; depends=[Biobase]; }; + ffpeExampleData = derive2 { name="ffpeExampleData"; version="1.32.0"; sha256="1wm1wpx292n3zn5zfq0w6i0g4yy88ixww9xbh9j7adnga7xrija4"; depends=[lumi]; }; + fibroEset = derive2 { name="fibroEset"; version="1.36.0"; sha256="14rdlin8g7lby616q3idxg05gxlrgad3r4d9gf4hy8384c0hh8np"; depends=[Biobase]; }; + fission = derive2 { name="fission"; version="1.14.0"; sha256="19zhcr4an9ddpjjzd93jwdkkvcd0s4qdikchyfd8rmybf98sbp3g"; depends=[SummarizedExperiment]; }; + flowPloidyData = derive2 { name="flowPloidyData"; version="1.20.0"; sha256="0jqmaazhn23cqbfz5f55aj1acr3z1vw2a6bhfk85n6npcqvbj1s9"; depends=[]; }; + flowWorkspaceData = derive2 { name="flowWorkspaceData"; version="3.6.0"; sha256="0jawkzfrq489mrf535biqrlp1xmg1aawbx71n05kxh06i5nyw3zq"; depends=[]; }; + frmaExampleData = derive2 { name="frmaExampleData"; version="1.30.0"; sha256="1dyh4qbw5l99052c7xhrjpn8xzzzqx870gxw1f3xnz7kmvymsqgb"; depends=[]; }; + furrowSeg = derive2 { name="furrowSeg"; version="1.22.0"; sha256="05nn6jlj3z30qz06rdrac1v558176kpgxhaqijmg3amwzinkjlg7"; depends=[abind dplyr EBImage locfit tiff]; }; + gageData = derive2 { name="gageData"; version="2.32.0"; sha256="18kj4c5p9gw0kvx9r71hfb2hn1xyxjny0j3z5shcy762xs17jxb7"; depends=[]; }; + gaschYHS = derive2 { name="gaschYHS"; version="1.32.0"; sha256="0x1vn8mk04j5aslhaxnfa17iqhz68m4yxjs9a5vmbry10lzz1r97"; depends=[Biobase]; }; + gatingMLData = derive2 { name="gatingMLData"; version="2.34.0"; sha256="1qmmaqqa61gmw98ph3mz7pmhbah775bndy436i1vnbyv54r2qi8k"; depends=[]; }; + gcspikelite = derive2 { name="gcspikelite"; version="1.32.0"; sha256="1rb03hm57m7498s0k2lr17zd1a3g19wrjszrwll6yfh9qv9m6gmn"; depends=[]; }; + geneLenDataBase = derive2 { name="geneLenDataBase"; version="1.30.0"; sha256="1a11w94n3415k3pbkb0id6j3hdz2mdkcwh30bywkrm64jlmj8f1l"; depends=[GenomicFeatures rtracklayer]; }; + genomationData = derive2 { name="genomationData"; version="1.26.0"; sha256="1h2q5ai72z1yrjkl2108qs9rn8k9kmidmyx22bq4wkpjvblz8ajb"; depends=[]; }; + golubEsets = derive2 { name="golubEsets"; version="1.36.0"; sha256="1np5z91y6b9d1jcsnc4qfa6gvq7lg4ih0l06lis989ya1j4733ka"; depends=[Biobase]; }; + gpaExample = derive2 { name="gpaExample"; version="1.6.0"; sha256="1s019xpdc0c27x66c6b2m22mzx33cr325w3x3vpw60cgnnkp49rr"; depends=[]; }; + grndata = derive2 { name="grndata"; version="1.26.0"; sha256="0i58gfmgc539m8l8d8kkh09jq1daddwxjpw0hwl5x0l3idkpr91v"; depends=[]; }; + h5vcData = derive2 { name="h5vcData"; version="2.14.0"; sha256="0pqwqbfp9wfynfkk41y1lpv29a46wdwnd7asa8bnfix1lxlvs4bf"; depends=[]; }; + hapmap100khind = derive2 { name="hapmap100khind"; version="1.36.0"; sha256="1d8fi14bsklbh9rd7z5wp8ni183l2as6hljbsc1gwz8bk7117v7a"; depends=[]; }; + hapmap100kxba = derive2 { name="hapmap100kxba"; version="1.36.0"; sha256="1agaxkfihjpn0kvjgq9xyr3bw4y9fwfpgn4whis50hlr1mjqliv6"; depends=[]; }; + hapmap500knsp = derive2 { name="hapmap500knsp"; version="1.36.0"; sha256="1dkigl3gx1yhm3lfjhpck6cll83i0glkf9ayqlpfslhgzv72avk5"; depends=[]; }; + hapmap500ksty = derive2 { name="hapmap500ksty"; version="1.36.0"; sha256="1c403sh5wpn4xs6zi8a6ydy8jddlpa0a5z0zwd7bcmipl4aq0x99"; depends=[]; }; + hapmapsnp5 = derive2 { name="hapmapsnp5"; version="1.36.0"; sha256="1fxi79nyy07sh8lmvzhr5gd923d4gm137p71988fkfs6s43dm2wn"; depends=[]; }; + hapmapsnp6 = derive2 { name="hapmapsnp6"; version="1.36.0"; sha256="1s66nw97sw46jlkhlxa8a4847kgxd2bwrjjx3pah52afpz98capg"; depends=[]; }; + harbChIP = derive2 { name="harbChIP"; version="1.32.0"; sha256="1dnq3mwa3w4a6333ff6gdyb2aq4hgigzb8zmvid9m3sh5js3pl6k"; depends=[Biobase Biostrings IRanges]; }; + healthyFlowData = derive2 { name="healthyFlowData"; version="1.32.0"; sha256="0lp8j6m3s9lm237dqmmpcamgffgvawclrq3r7n0ln0qy3z9k65jy"; depends=[flowCore]; }; + hgu133abarcodevecs = derive2 { name="hgu133abarcodevecs"; version="1.32.0"; sha256="0m21wv5z7y9crcvq3hh0fj5r48bb6f5vijpibj4wmj55mjlbdd0s"; depends=[]; }; + hgu133plus2CellScore = derive2 { name="hgu133plus2CellScore"; version="1.14.0"; sha256="015k7l7da223vzplfn2ih3k6pxw1pyv1zcprmvs8ziaxkrh07v94"; depends=[Biobase]; }; + hgu133plus2barcodevecs = derive2 { name="hgu133plus2barcodevecs"; version="1.32.0"; sha256="1ivqgc2sm98wykkixqz13jjv739rza49jkn6nx8d907ig9cxsa97"; depends=[]; }; + hgu2beta7 = derive2 { name="hgu2beta7"; version="1.34.0"; sha256="06p37yiirpf36bgnhv7amfw470aa0f2nrw2jybx3iksy1i3175q4"; depends=[]; }; + humanStemCell = derive2 { name="humanStemCell"; version="0.34.0"; sha256="0lvy1n389wsc85yi7kmwq2qda0nl3hpl5bqak01fr3d6040v7g27"; depends=[Biobase hgu133plus2_db]; }; + imcdatasets = derive2 { name="imcdatasets"; version="1.2.0"; sha256="1qgg2cnalx9kiv73g0n9axc6y5b25kwxbmn7cg9syvlrfn0iynlz"; depends=[cytomapper DelayedArray ExperimentHub HDF5Array S4Vectors SingleCellExperiment]; }; + kidpack = derive2 { name="kidpack"; version="1.36.0"; sha256="094b1jhyal4h3k4ilmayz77mbjqkmn7b5bsw799jmsqyg93f4r7g"; depends=[Biobase]; }; + leeBamViews = derive2 { name="leeBamViews"; version="1.30.0"; sha256="1f0lc8k14canmp124qqys6pwp9v88z7cwr7kgxi5mrzk92r2jiz6"; depends=[Biobase BSgenome GenomicAlignments GenomicRanges IRanges Rsamtools S4Vectors]; }; + leukemiasEset = derive2 { name="leukemiasEset"; version="1.30.0"; sha256="0hnqi0qm7caipjkp3asabby5jrjl57vvshnwiwqnjsf87xx19cjx"; depends=[Biobase]; }; + lumiBarnes = derive2 { name="lumiBarnes"; version="1.34.0"; sha256="103iz7vjhh1w8zyb4n3kf1w9qfa7li9p2jql48cjsadvil4bfl09"; depends=[Biobase lumi]; }; + lungExpression = derive2 { name="lungExpression"; version="0.32.0"; sha256="1x1hxdyiha3cbl6b87f3d9lzrdlal3lcvgyiqliijqmjphpgjmvk"; depends=[Biobase]; }; + lydata = derive2 { name="lydata"; version="1.20.0"; sha256="0sl5a35fgac7lzi5y52fif7s5chi4jskg21a46gcyi8xv6k8lj4f"; depends=[]; }; + mAPKLData = derive2 { name="mAPKLData"; version="1.26.0"; sha256="01dfn8jd5rq14fk7s14i4z6rn59c82qzdy12lhn2srzxdz0jhwf2"; depends=[]; }; + mCSEAdata = derive2 { name="mCSEAdata"; version="1.14.0"; sha256="0sa3c0b3i3qf9ng7475lszl6lxl33hb6m3fcxlval06qifsdbc39"; depends=[]; }; + macrophage = derive2 { name="macrophage"; version="1.10.0"; sha256="1kxnrz40b0magbl9dlpx2p216hnf91lkax0pzxsg9ci4xn3xz844"; depends=[]; }; + mammaPrintData = derive2 { name="mammaPrintData"; version="1.30.0"; sha256="00f2kl84xa1f84p03nqa139p753ln1fdxc4nih3f4nnzbjxl5chb"; depends=[]; }; + maqcExpression4plex = derive2 { name="maqcExpression4plex"; version="1.38.0"; sha256="0xx3sqapk29f5wyr7zslhyay22ly53q2ysdgvl2k888j9glblh9l"; depends=[]; }; + mcsurvdata = derive2 { name="mcsurvdata"; version="1.12.0"; sha256="0cf3symwf91gfrb5rv0vyfmin3l27jc0gws558y3g75h13la2zxm"; depends=[AnnotationHub Biobase ExperimentHub]; }; + metaMSdata = derive2 { name="metaMSdata"; version="1.30.0"; sha256="1cshvd3s5d1zxipw4yyfi45lsi6abx12j3n39qi2wp405yx53bnp"; depends=[]; }; + methylclockData = derive2 { name="methylclockData"; version="1.2.0"; sha256="1qfwjw2z40v3dk6ygchwnp61fzxa4wyjd7aq8l4i5krylxzwj1ic"; depends=[ExperimentHub ExperimentHubData]; }; + miRNATarget = derive2 { name="miRNATarget"; version="1.32.0"; sha256="067bcdyhqrrym2sz854dw2qpmabfp1yf2iryhpkbfk9b8966b9yv"; depends=[Biobase]; }; + miRcompData = derive2 { name="miRcompData"; version="1.24.0"; sha256="1gb8zx82dlfqhdl8yy1p0l756qs2lldnlm05xk6r4k46wz937jw9"; depends=[]; }; + microRNAome = derive2 { name="microRNAome"; version="1.16.0"; sha256="1y6g5i8x2ylxrr6k80kg92a04isfr7c3w7zi01chf1fpsdxjimjn"; depends=[SummarizedExperiment]; }; + microbiomeDataSets = derive2 { name="microbiomeDataSets"; version="1.2.0"; sha256="0pi15jk2k2nzcylh45mklz7id556ljqhx1fdcc04hrgw7n96c1ks"; depends=[ape BiocGenerics Biostrings ExperimentHub MultiAssayExperiment SummarizedExperiment TreeSummarizedExperiment]; }; + minfiData = derive2 { name="minfiData"; version="0.40.0"; sha256="12lnn43l6mdk4rbcihd68hsz0rqgi005zwih5wqx1jp400g2kd07"; depends=[IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest minfi]; }; + minfiDataEPIC = derive2 { name="minfiDataEPIC"; version="1.20.0"; sha256="0jc1mqw2ah95ai10xl8m62gs38c88qzrsx4lkcg1w03dqxky08qj"; depends=[IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest minfi]; }; + minionSummaryData = derive2 { name="minionSummaryData"; version="1.24.0"; sha256="1ldwmxhs7sg6k30prsa88hkxwmb3sf8ik2zv83j020cqxjlwr6xv"; depends=[]; }; + mosaicsExample = derive2 { name="mosaicsExample"; version="1.32.0"; sha256="0jnak8dsdkyxbr5bzd1d17lyksmvk6jl6p0hh4gdkxfv476by05y"; depends=[]; }; + mouse4302barcodevecs = derive2 { name="mouse4302barcodevecs"; version="1.32.0"; sha256="1sppdbcdd20nd19887x4bfsciqmh6gffv6ikaqq21k7lkraidb4c"; depends=[]; }; + msPurityData = derive2 { name="msPurityData"; version="1.22.0"; sha256="1v1hdgzz9v7sy0hjpimy3jaj42zhb2lxr3612qb07n0a4rl7k700"; depends=[]; }; + msd16s = derive2 { name="msd16s"; version="1.14.0"; sha256="02mn8pjxqfy9rjc6rdac3in2iqmy7x6lkb8cag3zhmx6z98b8lxv"; depends=[Biobase metagenomeSeq]; }; + msdata = derive2 { name="msdata"; version="0.34.0"; sha256="066ss2cvqmisxw1sslz04a0izq2vmpgvlg00v8wynv7pmq1783w2"; depends=[]; }; + msigdb = derive2 { name="msigdb"; version="1.2.0"; sha256="1i9c4h52z64kma1ms7qcvp3w6xrn2cmcrm389837znscghcm60mx"; depends=[AnnotationDbi AnnotationHub ExperimentHub GSEABase org_Hs_eg_db org_Mm_eg_db]; }; + msqc1 = derive2 { name="msqc1"; version="1.22.0"; sha256="0r0aj6x67ys5bxxfwc8cybkqnfl226ypgz5zhs6d701y8py7c3mv"; depends=[lattice]; }; + mtbls2 = derive2 { name="mtbls2"; version="1.24.0"; sha256="1kbpnxizzz42inj6g1s4xgq2wmk53zkvpvgdkwvljxzavr8znjl6"; depends=[]; }; + muscData = derive2 { name="muscData"; version="1.8.0"; sha256="1m263nykpxzl6xqvx8s7iadmfn4ammfvh2h0cdrk01vw4m4llywd"; depends=[ExperimentHub SingleCellExperiment]; }; + mvoutData = derive2 { name="mvoutData"; version="1.30.0"; sha256="059y5iqbgav4b0sxdqjq6a0nx4c9wnxny1amz5bda4s3ragvn7vh"; depends=[affy Biobase lumi]; }; + nanotubes = derive2 { name="nanotubes"; version="1.10.0"; sha256="0rfq4z3cyx3skgrnrv94x5vxxijjrycim79q42anyk8f6p52yfsw"; depends=[]; }; + nullrangesData = derive2 { name="nullrangesData"; version="1.0.0"; sha256="0qcmmrwkdxlf33dlwdj1wi0b7s1kq6fw87ssc6c20wlzq5izxhnl"; depends=[ExperimentHub GenomicRanges InteractionSet]; }; + oct4 = derive2 { name="oct4"; version="1.10.0"; sha256="1ayjjx9rnsg8s6gnsbcymg5rl2c9hv16q0gfgwrfz56vz4j1lwpz"; depends=[]; }; + optimalFlowData = derive2 { name="optimalFlowData"; version="1.6.0"; sha256="1g11hanznd30f9payhb91z8zv9w2l0qicxmrq0ykgxmsmbw6hg44"; depends=[]; }; + pRolocdata = derive2 { name="pRolocdata"; version="1.32.0"; sha256="1wj50c0xaa8nqxzvvhkvfnh6bncq54crjrczad1xxsizik1vz0yn"; depends=[Biobase MSnbase]; }; + parathyroidSE = derive2 { name="parathyroidSE"; version="1.32.0"; sha256="03jv5jsh6yn53kf9qvlgkqrwh5647p5jnwaz4lqn5lc14q9b2qd9"; depends=[SummarizedExperiment]; }; + pasilla = derive2 { name="pasilla"; version="1.22.0"; sha256="0jgphpwm5z1rzhcqbpzrhyfynjg5p8lb46m2l9ffmxbwi899i0qh"; depends=[]; }; + pasillaBamSubset = derive2 { name="pasillaBamSubset"; version="0.32.0"; sha256="1zxbcf83hsfzkps5ms46nj3g5ym532zncwlfna95kmw12xc9a90w"; depends=[]; }; + pcxnData = derive2 { name="pcxnData"; version="2.16.0"; sha256="05nnpjnci3q2g1rmmmv8vjyzjylx4pzi42p71b95ff2apifbhk95"; depends=[]; }; + pd_atdschip_tiling = derive2 { name="pd.atdschip.tiling"; version="0.32.0"; sha256="0bg7r5101xayyqbb1m4xcnq5iz63h3jl7v8v2s2ma07yaxix9w7x"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pepDat = derive2 { name="pepDat"; version="1.14.0"; sha256="1l6cp2w22pywvdkzra8ifwxf4s5v47hpf5ljp97k34wpsrh7cws4"; depends=[GenomicRanges]; }; + plasFIA = derive2 { name="plasFIA"; version="1.22.0"; sha256="118fch06a609gp799dsym3k14zspxdxzd9ck5jjpf8b3pf17ly9y"; depends=[proFIA]; }; + plotgardenerData = derive2 { name="plotgardenerData"; version="1.0.0"; sha256="0fad3v1gh0g595zk1vabns8jfhb9h1qnlqynrjq50hrgg1vdljgw"; depends=[]; }; + ppiData = derive2 { name="ppiData"; version="0.32.0"; sha256="0dkg5n492rmzpmbpd59gh6ab8y2j1hvwcy1na919napjccwmq88b"; depends=[AnnotationDbi graph]; }; + prebsdata = derive2 { name="prebsdata"; version="1.30.0"; sha256="0qqlizp029zgh5gsy9spc7a5l6wd80d2q15p1y8hk6ghgnnj13ka"; depends=[]; }; + preciseTADhub = derive2 { name="preciseTADhub"; version="1.2.0"; sha256="1ya8g899scnjfdidzdqkdgvn2xgsn98cgv7lnbcvnw7cg1ilzxh1"; depends=[ExperimentHub]; }; + prostateCancerCamcap = derive2 { name="prostateCancerCamcap"; version="1.22.0"; sha256="0bkw08cq559z5mban238nwi917zkdysk3gjv9rqafq02ksgzn261"; depends=[Biobase]; }; + prostateCancerGrasso = derive2 { name="prostateCancerGrasso"; version="1.22.0"; sha256="0a13q40bw3f1s9vv3xikbqzs71nns9hvfkf3acqjw0ydq0ca0ns1"; depends=[Biobase]; }; + prostateCancerStockholm = derive2 { name="prostateCancerStockholm"; version="1.22.0"; sha256="0jr248zkbsqp8sidnf3yl8f53aqrp5di574ymgmqxmqdxc72pd67"; depends=[Biobase]; }; + prostateCancerTaylor = derive2 { name="prostateCancerTaylor"; version="1.22.0"; sha256="0s1jk2wj514rn43l13rw8k3y3phsiif3dw5pn84cqs47zwkb7q7q"; depends=[Biobase]; }; + prostateCancerVarambally = derive2 { name="prostateCancerVarambally"; version="1.22.0"; sha256="1jj3qa795q75s46brq67hr8vkpzdxgc05wi3i564y4k8d08gl0xl"; depends=[Biobase]; }; + ptairData = derive2 { name="ptairData"; version="1.2.0"; sha256="13dqn720svg74q7fn6wvplcsdjpjlr8dj83ncqlsvddmyscyyclk"; depends=[rhdf5 signal]; }; + pumadata = derive2 { name="pumadata"; version="2.30.0"; sha256="184xrjjm4smgrfj18w63qq1p7f0dmn2qvf3y3mym1s6r2z00r73s"; depends=[Biobase oligo puma]; }; + pwrEWAS_data = derive2 { name="pwrEWAS.data"; version="1.8.0"; sha256="15zkxp1wpnxi0g15x9ym1syfg3q5scvmpxq3zj5cs37z60y9gb7d"; depends=[ExperimentHub]; }; + qPLEXdata = derive2 { name="qPLEXdata"; version="1.12.0"; sha256="0dw6dicy7srlx5nxla76k338ki4aan54h3rnrqmyd7h3pp5svx09"; depends=[dplyr knitr MSnbase qPLEXanalyzer]; }; + rRDPData = derive2 { name="rRDPData"; version="1.14.0"; sha256="096wasx4xap4jvcziqr175qq84kz0yzy6v2ji618r6cflnlfrd8p"; depends=[rRDP]; }; + rcellminerData = derive2 { name="rcellminerData"; version="2.16.0"; sha256="1yany4zkk72kxrqzy27azxfnl6mkrf02yby1gizixn04mqzbjl1a"; depends=[Biobase]; }; + restfulSEData = derive2 { name="restfulSEData"; version="1.16.0"; sha256="1bx41xwxnvx6712wsy5qljji2w3wiybvddkxic8xc9l2hrcmfhrz"; depends=[ExperimentHub SummarizedExperiment]; }; + rheumaticConditionWOLLBOLD = derive2 { name="rheumaticConditionWOLLBOLD"; version="1.32.0"; sha256="0k2klx4rpyzcq346c3ak2lf6w47zkhnhiqn4rs70xnxnsbjn2ca5"; depends=[]; }; + sampleClassifierData = derive2 { name="sampleClassifierData"; version="1.18.0"; sha256="12k7xhd2axmcpmv970xbhx5r9b0jdmkxxqm01a0v2jfx3imzz9jb"; depends=[SummarizedExperiment]; }; + scATAC_Explorer = derive2 { name="scATAC.Explorer"; version="1.0.0"; sha256="16qscpjbbphrd1qfp85r9bw8v98866kzsf20fk270m2aq378y4i8"; depends=[BiocFileCache data_table Matrix S4Vectors SingleCellExperiment]; }; + scRNAseq = derive2 { name="scRNAseq"; version="2.8.0"; sha256="19caas79yarf3vww60bnn92v9ns82pawqbbw78kmy0x94hvsfdbk"; depends=[AnnotationDbi AnnotationHub BiocGenerics ensembldb ExperimentHub GenomicFeatures GenomicRanges S4Vectors SingleCellExperiment SummarizedExperiment]; }; + scTHI_data = derive2 { name="scTHI.data"; version="1.6.0"; sha256="0n794kicpylibqgi4z9mwdgmk5ni3yhqzaqcdr2mij844s079fx4"; depends=[]; }; + scanMiRData = derive2 { name="scanMiRData"; version="1.0.0"; sha256="0z6nl4w4r8m1mara0zyzlg7xx6y9fa8psvln0695wvpxzmps4y9h"; depends=[scanMiR]; }; + scpdata = derive2 { name="scpdata"; version="1.2.0"; sha256="11nqfjk5cy77c720f035qc7l5kryf8fkc0rg6l6j646rcrk1dbmz"; depends=[AnnotationHub ExperimentHub QFeatures S4Vectors SingleCellExperiment]; }; + seq2pathway_data = derive2 { name="seq2pathway.data"; version="1.26.0"; sha256="0axgbixlr3zrjlhxrsbcv4fxl42bnd23gwfpngj62pi12mk4v54j"; depends=[]; }; + seqCNA_annot = derive2 { name="seqCNA.annot"; version="1.30.0"; sha256="04m6azyswyglh2lvikk6xhnn2449p6vj2zhny1lpcg7j4x8msdvm"; depends=[]; }; + seqc = derive2 { name="seqc"; version="1.28.0"; sha256="1iz35c3k8cr1080yi6cmjr42hwigfwjz5ydn36n6yy41n1s988za"; depends=[Biobase]; }; + serumStimulation = derive2 { name="serumStimulation"; version="1.30.0"; sha256="1zn0q5zxdzfkkgv8n3q5nyxsj6yrv3chhyivggzxrjk942anl4rg"; depends=[]; }; + sesameData = derive2 { name="sesameData"; version="1.12.0"; sha256="1kr5vn4rw1ncnvbxx3j2amqqzsddzwy79qlpzqxp8jmzydqfamxj"; depends=[AnnotationHub curl ExperimentHub rmarkdown]; }; + seventyGeneData = derive2 { name="seventyGeneData"; version="1.30.0"; sha256="0ckip0hw3xwf48iqschdwrlx4yr5wnyf7iycxfbrc2cz7zsbgp5n"; depends=[]; }; + shinyMethylData = derive2 { name="shinyMethylData"; version="1.14.0"; sha256="0hb1ahn1c613iz6ds39jgpa6aw0wgl0pv5f9gai1fp1zbqc44r6p"; depends=[]; }; + signatureSearchData = derive2 { name="signatureSearchData"; version="1.8.0"; sha256="13xfdg3si14zmrbib691301hhxxj3d3xyfkab5l4skspzgpd64cx"; depends=[affy Biobase dplyr ExperimentHub limma magrittr R_utils rhdf5 signatureSearch]; }; + simpIntLists = derive2 { name="simpIntLists"; version="1.30.0"; sha256="0q2lqfhsjncdj42hblrh389j2m47x26nn58s31s1448pddhrp7z1"; depends=[]; }; + spatialDmelxsim = derive2 { name="spatialDmelxsim"; version="1.0.0"; sha256="1h5crcjrzapj5j31285ana48g3b2iscxwlzxxdx9i03jsl39dlp8"; depends=[ExperimentHub SummarizedExperiment]; }; + spatialLIBD = derive2 { name="spatialLIBD"; version="1.6.0"; sha256="0c1ayv3mf31smmqfys85xjpadkavjixw545gkalibvxrkxmq0qb3"; depends=[AnnotationHub benchmarkme BiocFileCache cowplot DT ExperimentHub fields ggplot2 golem IRanges jsonlite plotly png Polychrome RColorBrewer S4Vectors scater sessioninfo shiny shinyWidgets SingleCellExperiment SpatialExperiment SummarizedExperiment tibble viridisLite]; }; + spqnData = derive2 { name="spqnData"; version="1.6.0"; sha256="0dwmgwz88g8fzpa2nl2zs4y32wrlf4ca142d8siak14wl089nm4y"; depends=[SummarizedExperiment]; }; + stemHypoxia = derive2 { name="stemHypoxia"; version="1.30.0"; sha256="05jly60gg5xr9511jlymzbpjysapfz2qq81rxhdz7cjbjkkgvykr"; depends=[]; }; + stjudem = derive2 { name="stjudem"; version="1.34.0"; sha256="005wy7b8naaph9krsdw234sk8fprccclnj7y4rfrs2f3lbrw4b2g"; depends=[]; }; + synapterdata = derive2 { name="synapterdata"; version="1.31.0"; sha256="03bdx8a1hrnlbcfq92d2yrjydw978pifbgr257r55p15khkigl86"; depends=[]; }; + systemPipeRdata = derive2 { name="systemPipeRdata"; version="1.22.0"; sha256="09p653i4drnfjvx3kd20f4jg7lw1254f44qknl3ghiqppa6rz9g9"; depends=[BiocGenerics GenomicFeatures GenomicRanges IRanges jsonlite remotes Rsamtools rtracklayer ShortRead]; }; + tartare = derive2 { name="tartare"; version="1.8.0"; sha256="0zaiy4wkikrcx2lc8mcsikpfp8yz3l17bd1z1l0g9r41ixysq105"; depends=[AnnotationHub ExperimentHub]; }; + tcgaWGBSData_hg19 = derive2 { name="tcgaWGBSData.hg19"; version="1.12.0"; sha256="1kmh4iyh2h7vc1mlwb3sridn4nwkqdschz5md5dk53mxkn2wxcmi"; depends=[bsseq ExperimentHub knitr]; }; + timecoursedata = derive2 { name="timecoursedata"; version="1.4.0"; sha256="007dh5wmjd6s7jr0p8af6irm25my20j1ifxhm6rxscgijskqb410"; depends=[SummarizedExperiment]; }; + tinesath1cdf = derive2 { name="tinesath1cdf"; version="1.32.0"; sha256="1pa1mzb03p8wfrihcpvqhp2zpzhf0hg5amwmivr4926x26ivkbsj"; depends=[]; }; + tinesath1probe = derive2 { name="tinesath1probe"; version="1.32.0"; sha256="00bhw370f4i866w08fia3acp7whxz7p167y444jaavll29bhqgsy"; depends=[AnnotationDbi]; }; + tissueTreg = derive2 { name="tissueTreg"; version="1.14.0"; sha256="0ldgq526izrvazrsbwhnvq6yqc2zr6d9mvq87jvsmwskxswyrpva"; depends=[]; }; + tofsimsData = derive2 { name="tofsimsData"; version="1.22.0"; sha256="1iqp70zr2i3p0pvzblsqqy7v949n5ankxp133zyhm88wscqxjwiv"; depends=[]; }; + topdownrdata = derive2 { name="topdownrdata"; version="1.16.0"; sha256="1s4yskh6jy49dipbb7ixrb4dbl5d8a33d1kb5j99vgimj8rq9gsy"; depends=[topdownr]; }; + tuberculosis = derive2 { name="tuberculosis"; version="1.0.0"; sha256="1bnimnik486r6g6mx0frigg5iwm3x4zbwsrsfq59s05mzix7silm"; depends=[AnnotationHub dplyr ExperimentHub magrittr purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr]; }; + tweeDEseqCountData = derive2 { name="tweeDEseqCountData"; version="1.32.0"; sha256="1zi2ic6yhwh3swp473xy540wg74g98bs4s820yzga9aqbcp7g5h2"; depends=[Biobase]; }; + tximportData = derive2 { name="tximportData"; version="1.22.0"; sha256="0fyy487874h2aqb5lvjndn8fgs708m3lv4am42xcjpky98b3zl71"; depends=[]; }; + vulcandata = derive2 { name="vulcandata"; version="1.16.0"; sha256="0apb9s4hm3a2hqwa81l58havrdwx2b8wl52xcb62b398f9mblhgb"; depends=[]; }; + yeastCC = derive2 { name="yeastCC"; version="1.34.0"; sha256="0h2z51ky3lmwbmryp7lk4njsmk4xhgrjgvgfj87gy6y2pns9vf10"; depends=[Biobase]; }; + yeastExpData = derive2 { name="yeastExpData"; version="0.40.0"; sha256="04x7spq9wh3kc5b0qblam312zazghkmvzlkypwqdd5g2vfrkracl"; depends=[graph]; }; + yeastGSData = derive2 { name="yeastGSData"; version="0.32.0"; sha256="0ic024xjg3xpgbrwvgvjfx35ljs3lanfkncnxcp71k81dzn5009l"; depends=[]; }; + yeastNagalakshmi = derive2 { name="yeastNagalakshmi"; version="1.30.0"; sha256="0j9bfwwwnp3ik7fr8m8pngv2pjgqg1j6mpa4pm5519kr031zk540"; depends=[]; }; + yeastRNASeq = derive2 { name="yeastRNASeq"; version="0.32.0"; sha256="0hdf1fysyndm0dpyh3r491vgqdrwpqysn0xibdr77rcwlbdshp6x"; depends=[]; }; + zebrafishRNASeq = derive2 { name="zebrafishRNASeq"; version="1.14.0"; sha256="150i53k2khdszk35hxxq5wsnzfdvf4kzqrmlb1946rjg6plm61pi"; depends=[]; }; + MAQCsubsetAFX = derive2 { name="MAQCsubsetAFX"; version="1.30.0"; sha256="14mwg96g7aza81vc3hpmb41scmygl8vnsi6s8p48c8v92106asmb"; depends=[affy Biobase]; broken = true; }; + MSstatsBioData = derive2 { name="MSstatsBioData"; version="1.13.0"; sha256="1jzypgfmd6d0fdj9ycp4jwihjpxyinr5kwi2x2dg2z6hvxx97gb8"; depends=[]; broken = true; }; } diff --git a/pkgs/development/r-modules/bioc-packages.nix b/pkgs/development/r-modules/bioc-packages.nix index 4e8c75187381..02e344295357 100644 --- a/pkgs/development/r-modules/bioc-packages.nix +++ b/pkgs/development/r-modules/bioc-packages.nix @@ -4,1993 +4,2084 @@ # Rscript generate-r-packages.R bioc >new && mv new bioc-packages.nix { self, derive }: -let derive2 = derive { biocVersion = "3.13"; }; +let derive2 = derive { biocVersion = "3.14"; }; in with self; { - ABAEnrichment = derive2 { name="ABAEnrichment"; version="1.22.0"; sha256="15v5n6d3mnj9d86swkh9agfvrsd065dldaywm1adwmkhhk525wmd"; depends=[ABAData data_table GOfuncR gplots gtools Rcpp]; }; - ABSSeq = derive2 { name="ABSSeq"; version="1.46.0"; sha256="17vnyck6bf39g2ax9zx41pp7hbdz08n7jb81whmmfb3spv31w7qj"; depends=[limma locfit]; }; - ABarray = derive2 { name="ABarray"; version="1.60.0"; sha256="15x05x45psy4a80p7nk8ylwkdy31q503jifpl6v74nmdlnbkhsw2"; depends=[Biobase multtest]; }; - ACE = derive2 { name="ACE"; version="1.10.0"; sha256="0nl8xczyldl5nwx2lh6p8bhznc110849frlippqjczgf992clj5b"; depends=[Biobase GenomicRanges ggplot2 QDNAseq]; }; - ACME = derive2 { name="ACME"; version="2.48.0"; sha256="1p7z17990kcc33i59l0r34p920as4l3jc21a0flp8f7prr2hdfkg"; depends=[Biobase BiocGenerics]; }; - ADAM = derive2 { name="ADAM"; version="1.8.0"; sha256="12m44jlnw1gd0c5rx0mayr10xkrmwiidv8jd51m4p5ni5r3012a2"; depends=[dplyr DT GO_db KEGGREST knitr pbapply Rcpp stringr SummarizedExperiment]; }; - ADAMgui = derive2 { name="ADAMgui"; version="1.8.0"; sha256="18nikr1slrqk4c0ks0b833mzs9ms1p1j52ywvrrvfj6qazgzqdbs"; depends=[ADAM colorRamps data_table dplyr DT ggplot2 ggpubr ggrepel ggsignif GO_db gridExtra knitr RColorBrewer reshape2 shiny shinyjs stringi stringr testthat varhandle]; }; - ADImpute = derive2 { name="ADImpute"; version="1.2.0"; sha256="0pj1i0nm6cd1200fzgyf5xx9mrh6iin51rl8m06k1yhrqbb6ixkw"; depends=[BiocParallel checkmate data_table DrImpute kernlab MASS Matrix rsvd S4Vectors SAVER SingleCellExperiment SummarizedExperiment]; }; - ADaCGH2 = derive2 { name="ADaCGH2"; version="2.32.0"; sha256="0r92bks74y57jb0w388rd9sbjmrlwlgramyai129ba8lcrzf1mpv"; depends=[aCGH bit cluster DNAcopy ff ffbase GLAD snapCGH tilingArray waveslim]; }; - AGDEX = derive2 { name="AGDEX"; version="1.40.0"; sha256="0ly39k0347dhxaqkw9fphxy8v5d0dd4zalb0jyxmzfa7zckgnw45"; depends=[Biobase GSEABase]; }; - AIMS = derive2 { name="AIMS"; version="1.24.0"; sha256="0i31fw9w4qf37nclxgd4dnlrrjw3hdj5aal66pl88xpigg8lcjzx"; depends=[Biobase e1071]; }; - ALDEx2 = derive2 { name="ALDEx2"; version="1.24.0"; sha256="17g231s6fmxswfkb540sjmmw4qkq0c4r2l1wsgxdn12h0dbiy60l"; depends=[BiocParallel GenomicRanges IRanges multtest Rfast S4Vectors SummarizedExperiment zCompositions]; }; - ALPS = derive2 { name="ALPS"; version="1.5.0"; sha256="1aydvzc6x0871iasij68xqdlhjyg69qbqxm0qh1q52w8gj2nyq3p"; depends=[assertthat BiocParallel ChIPseeker corrplot data_table dplyr genefilter GenomicRanges GGally gghalves ggplot2 ggseqlogo Gviz magrittr org_Hs_eg_db plyr reshape2 rtracklayer stringr tibble tidyr TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; - AMARETTO = derive2 { name="AMARETTO"; version="1.8.0"; sha256="0q0f4j52iildrli04y34m2nm6x4x4h0gzqs0mjaqc8al7cqm8pp5"; depends=[BiocFileCache callr circlize ComplexHeatmap curatedTCGAData doParallel dplyr DT foreach ggplot2 glmnet gridExtra httr impute knitr limma Matrix matrixStats MultiAssayExperiment Rcpp readr reshape2 rmarkdown tibble]; }; - AMOUNTAIN = derive2 { name="AMOUNTAIN"; version="1.18.0"; sha256="1iyr1lzig3arrwc0gb5n35v487jgqnbzvx8c7xvb6ji1qfpsfa1d"; depends=[]; }; - ANCOMBC = derive2 { name="ANCOMBC"; version="1.2.2"; sha256="0wd3y9i1y2ji9s6s108ibkfdjwvq96jm22lrbwbshyh2vc5q35l7"; depends=[MASS microbiome nloptr phyloseq Rdpack]; }; - ANF = derive2 { name="ANF"; version="1.14.0"; sha256="0fam3qrik5n51rcm4rm89fyq718wjswfr11dmsvhiyfdb7m25471"; depends=[Biobase igraph MASS RColorBrewer survival]; }; - APAlyzer = derive2 { name="APAlyzer"; version="1.6.0"; sha256="0rvfgdvlr8qlb3c4wb0l3yyffky0z04ijpal7krqbz8f6w5ynv1j"; depends=[DESeq2 dplyr ensembldb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel repmis Rsamtools Rsubread rtracklayer SummarizedExperiment tidyr VariantAnnotation]; }; - ARRmNormalization = derive2 { name="ARRmNormalization"; version="1.32.0"; sha256="0ni3vblcadhwxaq1pf1n9jn66cp3bqch68ww4c8zh19zagil2y7r"; depends=[ARRmData]; }; - ASAFE = derive2 { name="ASAFE"; version="1.18.0"; sha256="1833d7zncd86f8fmpqdmr0w9rgccy9d8s79qmg6zg6fhdkbka4qh"; depends=[]; }; - ASEB = derive2 { name="ASEB"; version="1.36.0"; sha256="0hda532m9wpgc3zv2q96cgrjnhsy5an04h5x7pddydkc8yl9hlli"; depends=[]; }; - ASGSCA = derive2 { name="ASGSCA"; version="1.26.0"; sha256="172v87hx1kagy4qh5w8vn823kx96xjcgfzdpf738n7z92pyianrc"; depends=[MASS Matrix]; }; - ASICS = derive2 { name="ASICS"; version="2.8.0"; sha256="0dxby6g9vpkxql6vz0v7h4272jxnpcjnh344i4wpw9pgkpnflhy8"; depends=[BiocParallel ggplot2 glmnet gridExtra Matrix mvtnorm PepsNMR plyr quadprog ropls SummarizedExperiment zoo]; }; - ASSET = derive2 { name="ASSET"; version="2.10.1"; sha256="15xigwd92qmp2xvfc0s8z66jmb8mrf13dlcifgy284hpa8wpnh2c"; depends=[MASS msm rmeta]; }; - ASSIGN = derive2 { name="ASSIGN"; version="1.28.1"; sha256="1zb70vylpwwvnkmk6z5pars81hk9nxsnp45aq8pv4wl8y7v2mvha"; depends=[ggplot2 gplots msm Rlab sva yaml]; }; - ASpediaFI = derive2 { name="ASpediaFI"; version="1.6.0"; sha256="1gjl3hm8hjva29b7hf0z4a993rng9x9f78v9hjhd9zj7s2jbdnpx"; depends=[BiocParallel biomaRt dplyr DRaWR e1071 fgsea GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 Gviz igraph IRanges IVAS limma Matrix mGSZ reshape2 ROCR Rsamtools rtracklayer S4Vectors scales SummarizedExperiment]; }; - ASpli = derive2 { name="ASpli"; version="2.2.0"; sha256="16l86v7i3gvpb722rym7yynz3yslbz5qm73hyaqfp6yhim78sq9b"; depends=[AnnotationDbi BiocGenerics BiocStyle data_table DT edgeR GenomicAlignments GenomicFeatures GenomicRanges Gviz htmltools igraph IRanges limma MASS pbmcapply Rsamtools S4Vectors tidyr UpSetR]; }; - ATACseqQC = derive2 { name="ATACseqQC"; version="1.16.0"; sha256="168g3xkhjzrfjpa1ynifdyfhsxx3rpyrbybsarlzr9kslw1cdkxl"; depends=[BiocGenerics Biostrings BSgenome ChIPpeakAnno edgeR GenomeInfoDb GenomicAlignments GenomicRanges GenomicScores IRanges KernSmooth limma motifStack preseqR randomForest Rsamtools rtracklayer S4Vectors]; }; - AUCell = derive2 { name="AUCell"; version="1.14.0"; sha256="0qdac3qalcki20r90k40cc8d0lfywzn9pffg9d719yvs7nrsfdjr"; depends=[BiocGenerics data_table GSEABase mixtools R_utils S4Vectors shiny SummarizedExperiment]; }; - AWFisher = derive2 { name="AWFisher"; version="1.6.0"; sha256="0s529rb3m4jhns0r1qgydsdqa25317zdr1djvwbfbkvb4s6bqndb"; depends=[edgeR limma]; }; - AffiXcan = derive2 { name="AffiXcan"; version="1.10.0"; sha256="1rff9hj74rv7wz4fngq64yrml3n3k6jry7ng4sdiv10s3xbdjgp7"; depends=[BiocParallel crayon MultiAssayExperiment SummarizedExperiment]; }; - AffyCompatible = derive2 { name="AffyCompatible"; version="1.52.0"; sha256="1xwz22wf2smsvmd0d5lfadbsgscnl3fl9msypy2mml38k048p6vj"; depends=[Biostrings RCurl XML]; }; - AffyRNADegradation = derive2 { name="AffyRNADegradation"; version="1.38.0"; sha256="1dsx5kk1b86cx59p5x81c78qpbxri0q5fh7f2c61lkqd0rd2vakk"; depends=[affy]; }; - AgiMicroRna = derive2 { name="AgiMicroRna"; version="2.42.0"; sha256="0q47fpg02a50qpv6r3vqvbyy5d7gp2k2nq7qbb643g4ihphxhz5x"; depends=[affy affycoretools Biobase limma preprocessCore]; }; - AllelicImbalance = derive2 { name="AllelicImbalance"; version="1.30.0"; sha256="1mn6975npncmfjlpjs3s2pgsrm32xgvnyl2vh1922l6vra97dkrc"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gridExtra Gviz IRanges lattice latticeExtra nlme Rsamtools S4Vectors seqinr SummarizedExperiment VariantAnnotation]; }; - AlphaBeta = derive2 { name="AlphaBeta"; version="1.6.1"; sha256="0gmh6bi7s27d0cpq6vnszbpzc9jpy75bmdymgix0zz28cky0ky99"; depends=[BiocParallel data_table dplyr expm ggplot2 gtools igraph optimx plotly stringr]; }; - AlpsNMR = derive2 { name="AlpsNMR"; version="3.2.3"; sha256="1cx6b8fq6w1nxi6wazm65k3q2fah37xh6ng0y9hs69kj0nblnyy1"; depends=[assertthat baseline BiocParallel dplyr fs furrr future GGally ggplot2 ggrepel glue htmltools magrittr matrixStats mixOmics pcaPP plyr purrr readxl reshape2 rlang rmarkdown S4Vectors signal speaq stringr SummarizedExperiment tibble tidyr tidyselect vctrs writexl zip]; }; - AnVIL = derive2 { name="AnVIL"; version="1.4.1"; sha256="11vc09fbzk6m6l3wfn4nmksx2fd7jq066af71av8sk6vifg6119f"; depends=[BiocManager dplyr futile_logger httr jsonlite rapiclient rlang tibble tidyr tidyselect]; }; - AnVILBilling = derive2 { name="AnVILBilling"; version="1.2.0"; sha256="04bq4bwy8gy7ibjkfqx5r2k3qpchx0gg6x1rn3s5b2ij6bdabbaj"; depends=[bigrquery DBI dplyr DT ggplot2 lubridate magrittr plotly shiny shinytoastr]; }; - AnVILPublish = derive2 { name="AnVILPublish"; version="1.2.0"; sha256="0biz57cn1lq9hbk8vg47fa8xx00prxrc0ml90a1ssx9yj5gcfgng"; depends=[AnVIL httr jsonlite rmarkdown whisker]; }; - Anaquin = derive2 { name="Anaquin"; version="2.16.0"; sha256="1d9bn904ii15zdvkgrkv87an2j21k3f7iph6rwl0nfqx3v52i1k6"; depends=[DESeq2 ggplot2 knitr locfit plyr qvalue ROCR]; }; - AneuFinder = derive2 { name="AneuFinder"; version="1.20.0"; sha256="0m6wphlriq7y21ih1p2kzml5jzcic79jc52kkk59dkjj8j88yllk"; depends=[AneuFinderData bamsignals BiocGenerics Biostrings cowplot DNAcopy doParallel ecp foreach GenomeInfoDb GenomicAlignments GenomicRanges ggdendro ggplot2 ggrepel IRanges mclust ReorderCluster reshape2 Rsamtools S4Vectors]; }; - AnnotationDbi = derive2 { name="AnnotationDbi"; version="1.54.1"; sha256="0fcammls431pgmp47r85k0zh3bz42bajbqdmafd31kpqncc1ijal"; depends=[Biobase BiocGenerics DBI IRanges KEGGREST RSQLite S4Vectors]; }; - AnnotationFilter = derive2 { name="AnnotationFilter"; version="1.16.0"; sha256="0799jja6v7l3jsi26wbjalkr5lriaxid05xb5g36iq93myhaj0sa"; depends=[GenomicRanges lazyeval]; }; - AnnotationForge = derive2 { name="AnnotationForge"; version="1.34.1"; sha256="0g75b2adak87raw0vn20fjh5980y7svknh8ih1sn4fwryglp4ggg"; depends=[AnnotationDbi Biobase BiocGenerics DBI RCurl RSQLite S4Vectors XML]; }; - AnnotationHub = derive2 { name="AnnotationHub"; version="3.0.2"; sha256="09drr13qqdj7b711axmlxv2gkaw17cvkhl0g2rh7w0b2vx13fg7y"; depends=[AnnotationDbi BiocFileCache BiocGenerics BiocManager BiocVersion curl dplyr httr interactiveDisplayBase rappdirs RSQLite S4Vectors yaml]; }; - AnnotationHubData = derive2 { name="AnnotationHubData"; version="1.22.0"; sha256="0jnh3d8v00xxnqcfmzhha75fai9cr1lrjm153i1cy2z9mi31rzr1"; depends=[AnnotationDbi AnnotationForge AnnotationHub Biobase BiocCheck BiocGenerics BiocManager biocViews Biostrings DBI futile_logger GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges jsonlite OrganismDbi RCurl Rsamtools RSQLite rtracklayer S4Vectors XML]; }; - ArrayExpress = derive2 { name="ArrayExpress"; version="1.52.0"; sha256="0ivmy1zfxagk29ss8vjl2nj6mjsab9l6ddmpji7s3ay4fqmppji5"; depends=[Biobase limma oligo XML]; }; - ArrayExpressHTS = derive2 { name="ArrayExpressHTS"; version="1.42.0"; sha256="1v6ifl5vz2d4kxhbqp7fj3lwi6jffk0ngjy3kpqbj0la5wjpy93n"; depends=[Biobase BiocGenerics biomaRt Biostrings bitops edgeR GenomicRanges Hmisc IRanges R2HTML RColorBrewer Rhtslib rJava Rsamtools sampling sendmailR ShortRead snow svMisc XML]; }; - AssessORF = derive2 { name="AssessORF"; version="1.10.0"; sha256="09m4naw8x2fd6nzyk1l17qhj1xgxl5da05s9gi80shdp29ka35gi"; depends=[Biostrings DECIPHER GenomicRanges IRanges]; }; - Autotuner = derive2 { name="Autotuner"; version="1.6.0"; sha256="030iaqrd6flfydv1lpzwmf10p4bcy9m40i96xd9q08mjzvc05fa4"; depends=[assertthat Biobase cluster entropy MSnbase mzR RColorBrewer scales]; }; - BAC = derive2 { name="BAC"; version="1.52.0"; sha256="1pf7910gi09k3yrz4byn5mhf3r2g19aal7nlzsya9b5z6wdnl7hb"; depends=[]; }; - BADER = derive2 { name="BADER"; version="1.30.0"; sha256="0a00qawc0hsiifq6z3psj0kk5xwxmj7vs8gpw6hya5kzgldci64c"; depends=[]; }; - BAGS = derive2 { name="BAGS"; version="2.32.0"; sha256="0m6fjakkzfhl99hykbgdqid36q5wnyydkibjqxrdcr9bkn0m1x9q"; depends=[Biobase breastCancerVDX]; }; - BANDITS = derive2 { name="BANDITS"; version="1.8.0"; sha256="1a3v0b1ls58d91chfj5d11vj1xfh0dkm1n6cin6x21z77vzxcsvx"; depends=[BiocParallel data_table doParallel doRNG DRIMSeq foreach ggplot2 MASS R_utils Rcpp RcppArmadillo]; }; - BASiCS = derive2 { name="BASiCS"; version="2.4.0"; sha256="18mywqr5x1v9wjj5csp31ycfvi968akcxr011bqxkdlxa8s71lxz"; depends=[assertthat Biobase BiocGenerics BiocParallel coda cowplot ggExtra ggplot2 hexbin MASS Matrix matrixStats Rcpp RcppArmadillo reshape2 S4Vectors scran scuttle SingleCellExperiment SummarizedExperiment viridis]; }; - BBCAnalyzer = derive2 { name="BBCAnalyzer"; version="1.22.0"; sha256="11l2z18mdr0b7fcbggixj7zk7015akpw4aj1g8qqfbfpq6l0ry6x"; depends=[Biostrings GenomicRanges IRanges Rsamtools SummarizedExperiment VariantAnnotation]; }; - BCRANK = derive2 { name="BCRANK"; version="1.54.0"; sha256="1l2ij4948w022129pvk1y1ajn3x2dmvjz7pd6bzpyiggs2mcvkw7"; depends=[Biostrings]; }; - BDMMAcorrect = derive2 { name="BDMMAcorrect"; version="1.10.0"; sha256="1y86sw3x82355d9jx14kxwlpzswz8a5r5p26ky8b62jfp70dy2lq"; depends=[ape ellipse ggplot2 Rcpp RcppArmadillo RcppEigen SummarizedExperiment vegan]; }; - BEARscc = derive2 { name="BEARscc"; version="1.12.0"; sha256="08zpd4mcsz6hfr2dbhv1bg470ai6bjhnqk06i1d5dysad7k4fhfm"; depends=[data_table ggplot2 SingleCellExperiment]; }; - BEAT = derive2 { name="BEAT"; version="1.30.0"; sha256="0r9am053n1jc9wdqp8ri4c2nf41c75mj7sr3j1i08x9zd46kp47z"; depends=[Biostrings BSgenome GenomicRanges ShortRead]; }; - BEclear = derive2 { name="BEclear"; version="2.8.0"; sha256="0w18livng2gcmjgvws7pix3gsnj237rs34sgwxsfmn8p5vfx8b30"; depends=[abind BiocParallel data_table futile_logger Matrix outliers Rcpp Rdpack]; }; - BGmix = derive2 { name="BGmix"; version="1.52.0"; sha256="1gp40ddspblpszzm4k4r7ysgx883iwdfqc5ds23p2q1ml9idwgvv"; depends=[KernSmooth]; }; - BHC = derive2 { name="BHC"; version="1.44.0"; sha256="0aaawm7h3ppyyhd7hi14rpynagnxx4730f5vxizj5bpzwbclp6h9"; depends=[]; }; - BLMA = derive2 { name="BLMA"; version="1.16.0"; sha256="0qbsffivgsrizksxxnzb63w8zk10vkhsbhnip83pssh1sx5ikf02"; depends=[Biobase graph GSA limma metafor PADOG ROntoTools]; }; - BPRMeth = derive2 { name="BPRMeth"; version="1.18.0"; sha256="1mrh2fkz2iihvqmarp4k7ghgk4lnjfqlvchg72hf8mndi137f6s5"; depends=[assertthat BiocStyle cowplot data_table doParallel e1071 earth foreach GenomicRanges ggplot2 IRanges kernlab magrittr MASS matrixcalc mvtnorm randomForest Rcpp RcppArmadillo S4Vectors truncnorm]; }; - BRAIN = derive2 { name="BRAIN"; version="1.38.0"; sha256="04y0dmgag8748nps3lzkff98bm3gkxi901jld8ns9f55d6nrr7x4"; depends=[Biostrings lattice PolynomF]; }; - BRGenomics = derive2 { name="BRGenomics"; version="1.4.0"; sha256="0vjr4yk7dynpfndmr1diw63g9arxyxb9x2y80km14wk2b57907l0"; depends=[DESeq2 GenomeInfoDb GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; - BSgenome = derive2 { name="BSgenome"; version="1.60.0"; sha256="1jhissp9ad1rn2p0bzr3yslbn84yqbaqgnn5p9hyacwr7mr091cn"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges IRanges matrixStats Rsamtools rtracklayer S4Vectors XVector]; }; - BUMHMM = derive2 { name="BUMHMM"; version="1.16.0"; sha256="1nqk14f7rkwdl3p0nixlpsxd4i6jf5wdsrz61w22afvsz401ppa6"; depends=[Biostrings devtools gtools IRanges stringi SummarizedExperiment]; }; - BUS = derive2 { name="BUS"; version="1.48.0"; sha256="14i9wqf5dlidxkga56zfafmqga0pq4qsfwb91jnqyszwn2hkhnlb"; depends=[infotheo minet]; }; - BUScorrect = derive2 { name="BUScorrect"; version="1.10.0"; sha256="0nnsqcds2z2b290g76fhw598ivpan0nnv51d19l9b8jvfnqcmqhw"; depends=[gplots SummarizedExperiment]; }; - BUSpaRse = derive2 { name="BUSpaRse"; version="1.6.1"; sha256="0dkbh4pnpmwrhjrgfqnsrbc2hj8rgb5wr1vlb67yvrqvxapqpi54"; depends=[AnnotationDbi AnnotationFilter BH BiocGenerics biomaRt Biostrings BSgenome dplyr ensembldb GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges magrittr Matrix plyranges Rcpp RcppArmadillo RcppProgress S4Vectors stringr tibble tidyr zeallot]; }; - BaalChIP = derive2 { name="BaalChIP"; version="1.18.0"; sha256="0zdd0xc16m9kf8wzf9xj03g4smdrpykjsja0pd5438ji0q30zhp4"; depends=[coda doBy doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges reshape2 Rsamtools scales]; }; - BadRegionFinder = derive2 { name="BadRegionFinder"; version="1.20.0"; sha256="05sbmb8f012p027n7wpajv0irh45pkmwrh5g1i2ycg6h581j1g8l"; depends=[biomaRt GenomicRanges Rsamtools S4Vectors VariantAnnotation]; }; - BaseSpaceR = derive2 { name="BaseSpaceR"; version="1.36.0"; sha256="02d679rkf5qvgpgi1chp57b1j23q3xqh5x8677h0d5b9z1l0pcrz"; depends=[RCurl RJSONIO]; }; - Basic4Cseq = derive2 { name="Basic4Cseq"; version="1.28.0"; sha256="1bcnnprpaabrpbbyw0kmlbhphp320qv5apsf935libv9gsam3029"; depends=[Biostrings BSgenome_Ecoli_NCBI_20080805 caTools GenomicAlignments GenomicRanges RCircos]; }; - BasicSTARRseq = derive2 { name="BasicSTARRseq"; version="1.20.0"; sha256="0cnigjid1yl191pihjg22yzfgqhw8flx6p32vjib09fvpib4pamh"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges S4Vectors]; }; - BatchQC = derive2 { name="BatchQC"; version="1.20.0"; sha256="052h7wjwn4p2asbmpinwwi350x7hwrsbxxk0kigjg3mld7qvf5q5"; depends=[corpcor ggvis gplots heatmaply knitr limma Matrix matrixStats MCMCpack moments pander reshape2 rmarkdown shiny sva]; }; - BayesKnockdown = derive2 { name="BayesKnockdown"; version="1.18.0"; sha256="126pm9l51fdza9090xqs3q21rwlz3fbzfn9p3p3071wzd4p7vpn6"; depends=[Biobase]; }; - BayesSpace = derive2 { name="BayesSpace"; version="1.2.1"; sha256="0r4406gxpknrf8nzxjsiilyys81d1sb8zcn2i7x30gbfskaxhdwz"; depends=[assertthat BiocFileCache BiocSingular coda DirichletReg ggplot2 Matrix mclust purrr Rcpp RcppArmadillo RcppDist RcppProgress RCurl rhdf5 S4Vectors scales scater scran SingleCellExperiment SummarizedExperiment xgboost]; }; - BeadDataPackR = derive2 { name="BeadDataPackR"; version="1.44.0"; sha256="1fn7c4135y1yxg3dvsqrax98bcrl6f1vbdhqxdv206ijyz07wvcg"; depends=[]; }; - BgeeCall = derive2 { name="BgeeCall"; version="1.8.0"; sha256="1byciy7vzbdkdgaim10s9qb7zlxsywbhcsrka31gm0rm9ljqc665"; depends=[biomaRt Biostrings data_table dplyr GenomicFeatures jsonlite rhdf5 rslurm rtracklayer sjmisc tximport]; }; - BgeeDB = derive2 { name="BgeeDB"; version="2.18.1"; sha256="1ziq180yfpdqwhjdzkwjjhwzn3kb0gkj6q0a26c7a30mcfb50w11"; depends=[Biobase curl data_table digest dplyr graph R_utils RCurl RSQLite tidyr topGO]; }; - BiFET = derive2 { name="BiFET"; version="1.12.0"; sha256="1fwy7ws0bn67557s0kcw8pbln2jg834n6kfbs8297ps07nxr0lpj"; depends=[GenomicRanges poibin]; }; - BiGGR = derive2 { name="BiGGR"; version="1.28.0"; sha256="1y9659pxm65w51zvrz36girb3qvfc64zijjkxmg6xn4pbc8vv1wf"; depends=[hyperdraw hypergraph LIM limSolve rsbml stringr]; }; - BiRewire = derive2 { name="BiRewire"; version="3.24.0"; sha256="0p6mr67mkw54490sv4dvkyh8l0xkpjfbqy532vi8l41i40qg3gry"; depends=[igraph Matrix slam tsne]; }; - BiSeq = derive2 { name="BiSeq"; version="1.32.0"; sha256="17wdjm3pshd7mq3ppgpm85vnpca2lj8xihlhjsmqcyhl5kvq7dfp"; depends=[betareg Biobase BiocGenerics Formula GenomeInfoDb GenomicRanges globaltest IRanges lokern rtracklayer S4Vectors SummarizedExperiment]; }; - BicARE = derive2 { name="BicARE"; version="1.50.0"; sha256="0j3gs4xcdgaca2c62jf2h86skbbxm1c9g2khs5bsa8fmkskr6vl9"; depends=[Biobase GSEABase multtest]; }; - BioCor = derive2 { name="BioCor"; version="1.16.0"; sha256="135rga7mwpzy8ypvriqpbmlh9l5yf61s9s1sa9615qfab14jh06b"; depends=[BiocParallel GSEABase Matrix]; }; - BioMM = derive2 { name="BioMM"; version="1.8.0"; sha256="0daqlm04bywl202msbrsfl8ddlksqmfkpnxvwxhzpxyjd7aagbvh"; depends=[BiocParallel CMplot e1071 ggplot2 glmnet imager lattice nsprcomp precrec ranger rms topGO vioplot xlsx]; }; - BioMVCClass = derive2 { name="BioMVCClass"; version="1.60.0"; sha256="04pld93nffbci47dnf0awmcmhlfzv599ggcd7hvq78w41ac60qv8"; depends=[Biobase graph MVCClass Rgraphviz]; }; - BioNERO = derive2 { name="BioNERO"; version="1.0.4"; sha256="1yj0pavyfrj2gsvaj1dkgmznibm2appxjx9rk5qjslhslmm5b05b"; depends=[BiocParallel ComplexHeatmap DESeq2 dynamicTreeCut GENIE3 ggnetwork ggnewscale ggplot2 ggpubr igraph intergraph matrixStats minet NetRep networkD3 RColorBrewer reshape2 SummarizedExperiment sva WGCNA]; }; - BioNet = derive2 { name="BioNet"; version="1.52.0"; sha256="15rk1jfv4h1mxvr5bs0qmq6fdnza7zcmksigqxb46fs7f6znr3yi"; depends=[AnnotationDbi Biobase graph igraph RBGL]; }; - BioNetStat = derive2 { name="BioNetStat"; version="1.12.0"; sha256="16xlfng9m8xvm831c2x6zmjc0gavlfiy9pnza55hdv86888fcnbg"; depends=[BiocParallel DT ggplot2 Hmisc igraph knitr markdown pathview pheatmap plyr psych RColorBrewer RJSONIO rmarkdown shiny shinyBS whisker yaml]; }; - BioQC = derive2 { name="BioQC"; version="1.20.0"; sha256="04akp94p0d0zid55m1b1k3qlw7iq914pcg57lihgj3pa92n1sc5l"; depends=[Biobase edgeR Rcpp]; }; - BioTIP = derive2 { name="BioTIP"; version="1.6.0"; sha256="1i6r8px0fmdjx8frpljppwql74mhx08ibvhs9y3qk91ck5h3f0js"; depends=[cluster GenomicRanges Hmisc igraph MASS psych stringr]; }; - Biobase = derive2 { name="Biobase"; version="2.52.0"; sha256="1sg8w8860zhlz9s1pf75xa8asd2hyqsj13fh5xc37hf5yqdfkavr"; depends=[BiocGenerics]; }; - BiocCheck = derive2 { name="BiocCheck"; version="1.28.0"; sha256="1h0l5w33c9jpc20pynq634qmx8jbfa802d7jslmf4haljmrxm4a1"; depends=[BiocManager biocViews codetools graph httr knitr optparse stringdist]; }; - BiocDockerManager = derive2 { name="BiocDockerManager"; version="1.4.0"; sha256="0dh1flm5chsdcihljrg6znjskqkp0qyjh39hsv4zq0frf1rm97j7"; depends=[dplyr httr memoise readr whisker]; }; - BiocFileCache = derive2 { name="BiocFileCache"; version="2.0.0"; sha256="0ymg4hmabk233qgassld62achjylm12rnidxbakfkx4dvvlbhxxv"; depends=[curl DBI dbplyr dplyr filelock httr rappdirs RSQLite]; }; - BiocGenerics = derive2 { name="BiocGenerics"; version="0.38.0"; sha256="1kv7lzmyki3hi771v01nml1v1hzz8pyhqqv0xcdzqy354mlgx4m6"; depends=[]; }; - BiocIO = derive2 { name="BiocIO"; version="1.2.0"; sha256="0skwnpxl6fkqihidpqrfzzh7b05x11j6jwkiinmhggmv0ggjb5ph"; depends=[BiocGenerics S4Vectors]; }; - BiocNeighbors = derive2 { name="BiocNeighbors"; version="1.10.0"; sha256="0cjidi18wjip9xzx83890wjk40vvjq06prf1ag4m2kac47w01r7v"; depends=[BiocParallel Matrix Rcpp RcppHNSW S4Vectors]; }; - BiocOncoTK = derive2 { name="BiocOncoTK"; version="1.12.1"; sha256="1ix09a39z7y2cj0y8qsd66ka8a8y8q79w08l4jv1yhhn9h4va89s"; depends=[bigrquery car ComplexHeatmap curatedTCGAData DBI dplyr DT GenomicFeatures GenomicRanges ggplot2 ggpubr graph httr IRanges magrittr plyr Rgraphviz rjson S4Vectors scales shiny SummarizedExperiment]; }; - BiocParallel = derive2 { name="BiocParallel"; version="1.26.2"; sha256="1y459cygq21f3igsdlxz1zlyad8qbl2qlr5h2d2dpnvblykvf48i"; depends=[BH futile_logger snow]; }; - BiocPkgTools = derive2 { name="BiocPkgTools"; version="1.10.2"; sha256="1sfp1nxlwbbbpx2iwvyk9p10jdy2vxhgn2b5fy5blayzjjlb3d80"; depends=[BiocFileCache BiocManager biocViews dplyr DT gh graph htmltools htmlwidgets httr igraph jsonlite magrittr RBGL readr rlang rvest stringr tibble tidyr tidyselect xml2]; }; - BiocSet = derive2 { name="BiocSet"; version="1.6.1"; sha256="0nmrg9cgq8l9w467y364jghnvym05abpj8pyj90grmrib2xc5sj2"; depends=[AnnotationDbi BiocIO dplyr KEGGREST ontologyIndex plyr rlang S4Vectors tibble tidyr]; }; - BiocSingular = derive2 { name="BiocSingular"; version="1.8.1"; sha256="16gkwq8fb8jdchpnlzq2hz3i74a6pzbnc1bf93282h11mp7qr58l"; depends=[beachmat BiocGenerics BiocParallel DelayedArray irlba Matrix Rcpp rsvd S4Vectors ScaledMatrix]; }; - BiocSklearn = derive2 { name="BiocSklearn"; version="1.14.1"; sha256="148qck2g2b7ic15iin4ga18qcmf5x1snnhpin9cfy4yyw3nzipyi"; depends=[basilisk knitr Rcpp reticulate SummarizedExperiment]; }; - BiocStyle = derive2 { name="BiocStyle"; version="2.20.2"; sha256="0p2wdq5vrx63ndghl9ww428z2lwnv5y88xmcr51by2g6vcj3brcf"; depends=[BiocManager bookdown knitr rmarkdown yaml]; }; - BiocVersion = derive2 { name="BiocVersion"; version="3.13.1"; sha256="0rsw8g4g1pcjw1zbx8x17yd3drhxqk4sx3cy3ddzy5731hl6mbfi"; depends=[]; }; - BiocWorkflowTools = derive2 { name="BiocWorkflowTools"; version="1.18.0"; sha256="1a32bwgnxaw0gv2gij2p4rm0a6l06jjhidvfz2v4k900pz1w79av"; depends=[BiocStyle bookdown git2r httr knitr rmarkdown rstudioapi stringr usethis]; }; - Biostrings = derive2 { name="Biostrings"; version="2.60.2"; sha256="0ai0fg0w4l0a7avbafdbqjgjpg91myxalwrg2i3ixm1l2lyyfyah"; depends=[BiocGenerics crayon GenomeInfoDb IRanges S4Vectors XVector]; }; - BitSeq = derive2 { name="BitSeq"; version="1.36.0"; sha256="08nkxi1071bd1i7f82af52bawllhmqxf38nmq35drcqzvraz16mm"; depends=[IRanges Rhtslib Rsamtools S4Vectors]; }; - BloodGen3Module = derive2 { name="BloodGen3Module"; version="1.0.0"; sha256="0rfmb9jkn4qdi3bp9hxczbgypyar46l5s8k9d7y60jlj2dp0rrv4"; depends=[circlize ComplexHeatmap ExperimentHub ggplot2 gtools limma matrixStats preprocessCore randomcoloR reshape2 SummarizedExperiment testthat V8]; }; - BrainSABER = derive2 { name="BrainSABER"; version="1.2.0"; sha256="05bhqjkjm3qhs0daj11jbhn5l5sd7x7pznzh7vfmahmjcdlr9s0w"; depends=[BiocFileCache biomaRt data_table lsa S4Vectors SummarizedExperiment]; }; - BridgeDbR = derive2 { name="BridgeDbR"; version="2.2.1"; sha256="1np0img4dkhlq0y781frww1i558na1jq416jg5kj2i6pq367a3h8"; depends=[curl rJava]; }; - BrowserViz = derive2 { name="BrowserViz"; version="2.14.1"; sha256="1ifhfsxqi9x62wc19w850z9wqrm9dyq7yxcdd4fk51cql3cxn1b9"; depends=[BiocGenerics httpuv jsonlite]; }; - BubbleTree = derive2 { name="BubbleTree"; version="2.22.0"; sha256="1bm175yl1m8ir6n06rzahr41sa4k2qnnz04n0srq39q9dnjfj4qm"; depends=[Biobase BiocGenerics BiocStyle biovizBase dplyr e1071 GenomicRanges ggplot2 gridExtra gtable gtools IRanges limma magrittr plyr RColorBrewer WriteXLS]; }; - BufferedMatrix = derive2 { name="BufferedMatrix"; version="1.56.0"; sha256="01yh2cnxvmca4hipg5r4byzn6jfvm6rdpzfp6fy2hdc4ag4v61qb"; depends=[]; }; - BufferedMatrixMethods = derive2 { name="BufferedMatrixMethods"; version="1.56.0"; sha256="1qfqigpsjmzszmwzip1iaw039c34byh35hhaa7xib27ismbk69kz"; depends=[BufferedMatrix]; }; - BumpyMatrix = derive2 { name="BumpyMatrix"; version="1.0.1"; sha256="01z3a548dp62q6d1pwp4r009ky3x2561y43a9s3xpf0vh40qz09x"; depends=[IRanges Matrix S4Vectors]; }; - CAEN = derive2 { name="CAEN"; version="1.0.0"; sha256="0b5xdxw1nz79ifz397izkzz0d3a4jh4mykzbskjvqzakhv4sxs03"; depends=[PoiClaClu SummarizedExperiment]; }; - CAFE = derive2 { name="CAFE"; version="1.28.0"; sha256="1zxl5v17f1pd4mrxhf2hkalr71iasiwydvgs90m4w2cjqlyvcdxa"; depends=[affy annotate Biobase biovizBase GenomicRanges ggbio ggplot2 gridExtra IRanges]; }; - CAGEfightR = derive2 { name="CAGEfightR"; version="1.12.0"; sha256="05qn060pbx90xgwp60jfvjgkv3q0sr5vsnnyxr63dnjr46dq6f18"; depends=[assertthat BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicInteractions GenomicRanges Gviz InteractionSet IRanges Matrix pryr rtracklayer S4Vectors SummarizedExperiment]; }; - CAGEr = derive2 { name="CAGEr"; version="1.34.0"; sha256="1c3j1618kca94j8xi3zghfxzv1vi6syglk2ymkapqdg4dv9ji1yx"; depends=[beanplot BiocGenerics BiocParallel BSgenome data_table DelayedArray formula_tools GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gtools IRanges KernSmooth memoise MultiAssayExperiment plyr reshape Rsamtools rtracklayer S4Vectors som stringdist stringi SummarizedExperiment vegan VGAM]; }; - CAMERA = derive2 { name="CAMERA"; version="1.48.0"; sha256="12267smsjdbp789cmxm31j3xh69q7pmi4hqq0k30f6br2icxdlxy"; depends=[Biobase graph Hmisc igraph RBGL xcms]; }; - CARNIVAL = derive2 { name="CARNIVAL"; version="2.2.0"; sha256="18jqanb7p8zylxvzp97s6zx1qbz5cl39jqllbz1v7k7pfayby580"; depends=[dplyr igraph lpSolve readr rjson rmarkdown stringr]; }; - CATALYST = derive2 { name="CATALYST"; version="1.16.2"; sha256="1vw8x54hwgcyn29k81zcvawawy2iy2qgp49gjpb830q04gx6yc6h"; depends=[circlize ComplexHeatmap ConsensusClusterPlus cowplot data_table dplyr drc flowCore FlowSOM ggplot2 ggrepel ggridges gridExtra magrittr Matrix matrixStats nnls purrr RColorBrewer reshape2 Rtsne S4Vectors scales scater SingleCellExperiment SummarizedExperiment]; }; - CAnD = derive2 { name="CAnD"; version="1.24.0"; sha256="0rgxcd62rxdy5ga0g82xdr370d3vlkmivs6xy2dp8zid2p0i5f6s"; depends=[ggplot2 reshape]; }; - CCPROMISE = derive2 { name="CCPROMISE"; version="1.18.0"; sha256="0zshwwhwacz3kbb23x8agz8xckyxlba3h4gfxxm6ff70l4xmy8nl"; depends=[Biobase CCP GSEABase PROMISE]; }; - CEMiTool = derive2 { name="CEMiTool"; version="1.16.0"; sha256="1xdhy5f7p9j527pawkdgcf9xhi0pwgwr2rgfrykl467grd13g8dr"; depends=[clusterProfiler data_table dplyr DT fastcluster fgsea ggdendro ggplot2 ggpmisc ggrepel ggthemes gridExtra gtable htmltools igraph intergraph knitr matrixStats network pracma rmarkdown scales sna stringr WGCNA]; }; - CFAssay = derive2 { name="CFAssay"; version="1.26.0"; sha256="1k4kdlw2nf3iliwnhh4sqk1803i945h5s3yiij12bqyv0psnzw1k"; depends=[]; }; - CGEN = derive2 { name="CGEN"; version="3.28.0"; sha256="1pv45malc3bjsz1vkrfw20q29gg9wj4ahvdc663zhfmd1ciba23a"; depends=[mvtnorm survival]; }; - CGHbase = derive2 { name="CGHbase"; version="1.52.0"; sha256="1p87k4vw981k97d9bckmprrfg55jwd91658rgxzjj8hnschf28a4"; depends=[Biobase marray]; }; - CGHcall = derive2 { name="CGHcall"; version="2.54.0"; sha256="1zik04y2q0anzy85l0b4ryzkxpfx2fnmpwp5s7akyk1jfl2r8gw7"; depends=[Biobase CGHbase DNAcopy impute snowfall]; }; - CGHnormaliter = derive2 { name="CGHnormaliter"; version="1.46.0"; sha256="0x2gfay4xzql94lxn7n54xsbph8cq5rlb8jn5zi83v6cf6f4ymfk"; depends=[Biobase CGHbase CGHcall]; }; - CGHregions = derive2 { name="CGHregions"; version="1.50.0"; sha256="0gk7grck9va0773db3wyjgpsk8nkxsz6nbshqs1ymy9qls1i10vz"; depends=[Biobase CGHbase]; }; - CHETAH = derive2 { name="CHETAH"; version="1.8.0"; sha256="01mvlbgdiz8skx14bw1g7l2x2jz99gx4li2rm91fimwdwgfqhd3m"; depends=[bioDist corrplot cowplot dendextend ggplot2 gplots pheatmap plotly reshape2 S4Vectors shiny SingleCellExperiment SummarizedExperiment]; }; - CHRONOS = derive2 { name="CHRONOS"; version="1.20.0"; sha256="1mzy7v0xcldfz5aw8bdaia8aahcladay70537w335q51wgqzszh8"; depends=[biomaRt circlize doParallel foreach graph igraph openxlsx RBGL RCurl rJava XML]; }; - CIMICE = derive2 { name="CIMICE"; version="1.0.0"; sha256="1xms5x0hdci3m0vhb078ywwjgzzwp0zr1mnqs96q7jwp7398xy24"; depends=[assertthat dplyr ggcorrplot ggplot2 ggraph glue igraph maftools Matrix networkD3 purrr relations tidyr visNetwork]; }; - CINdex = derive2 { name="CINdex"; version="1.20.0"; sha256="16lmpcwlsqj1v84wqzk87hqd2p89n5mq5izpwf6rvv9smcw94df0"; depends=[bitops dplyr GenomeInfoDb GenomicRanges gplots gridExtra IRanges png S4Vectors som stringr]; }; - CMA = derive2 { name="CMA"; version="1.50.0"; sha256="1zza675lrpisxq918f1aj8hfcy463mfwyl8iss9rfa0zdnymsybv"; depends=[Biobase]; }; - CNAnorm = derive2 { name="CNAnorm"; version="1.38.0"; sha256="10vlxkg0lww5vnm3lql9d4yn4pi09lcpvv681z6mbq86krl7jga0"; depends=[DNAcopy]; }; - CNEr = derive2 { name="CNEr"; version="1.28.0"; sha256="13w0gsfm7k29dp5nb0c9sb2ix506ph6dixsjis6xxcz6acq7lg2k"; depends=[annotate BiocGenerics Biostrings DBI GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 GO_db IRanges KEGGREST poweRlaw R_utils readr reshape2 RSQLite rtracklayer S4Vectors XVector]; }; - CNORdt = derive2 { name="CNORdt"; version="1.34.0"; sha256="0i062h7rvv86p2ab9iqgmv9352i47rlgdqxqwsmbmdaxv42xcsqi"; depends=[abind CellNOptR]; }; - CNORfeeder = derive2 { name="CNORfeeder"; version="1.32.0"; sha256="1gi50bfn7hkh5mcli8hnaasczw8dw41cnc60nhd30q6618dj4287"; depends=[CellNOptR graph]; }; - CNORfuzzy = derive2 { name="CNORfuzzy"; version="1.34.0"; sha256="1m4flyywlbjxr0wk9ws24ga3s3a72d8hs44dyzv2q7q2xq854aac"; depends=[CellNOptR nloptr]; }; - CNORode = derive2 { name="CNORode"; version="1.34.0"; sha256="0wknhgnckv3jvcbikhf8d6s8m14pgwqvywy38z590v362m4hyn8z"; depends=[CellNOptR genalg]; }; - CNTools = derive2 { name="CNTools"; version="1.48.0"; sha256="1lirzqmqdfzy350zjvyjd2fg682pqv7c2p01w26w5yihqfn5rap3"; depends=[genefilter]; }; - CNVPanelizer = derive2 { name="CNVPanelizer"; version="1.24.0"; sha256="0vwwh4yxw72hczql621fa9hpmh8i9sdnpx7x1rlm1h69c4rrwvjd"; depends=[BiocGenerics exomeCopy foreach GenomeInfoDb GenomicRanges ggplot2 gplots IRanges NOISeq openxlsx plyr reshape2 Rsamtools S4Vectors shiny shinyFiles shinyjs stringr testthat]; }; - CNVRanger = derive2 { name="CNVRanger"; version="1.8.0"; sha256="0amp2p25ha0wjmd0bk14h0kwbgcf6n5v3ishby3j470nrrynq1sc"; depends=[BiocGenerics BiocParallel data_table edgeR GDSArray gdsfmt GenomeInfoDb GenomicRanges IRanges lattice limma plyr qqman RaggedExperiment rappdirs reshape2 S4Vectors SNPRelate SummarizedExperiment]; }; - CNVfilteR = derive2 { name="CNVfilteR"; version="1.6.2"; sha256="17xv5rlz8avgb7ljfrww4ffi05142iwnavgz3h1w49m1b27112vl"; depends=[assertthat Biostrings CopyNumberPlots GenomeInfoDb GenomicRanges IRanges karyoploteR pracma regioneR Rsamtools SummarizedExperiment VariantAnnotation]; }; - CNVgears = derive2 { name="CNVgears"; version="1.0.0"; sha256="1a07l4g01nkgfkpw8n80sjmxfwvjkp5zl28nz2mm4mgj8kd482xs"; depends=[data_table ggplot2]; }; - CNViz = derive2 { name="CNViz"; version="1.0.0"; sha256="1c5pxxyi5hvcd9pc3nlmwixnjr0iic7qm4cw3f84cw40sslrvzzq"; depends=[CopyNumberPlots dplyr DT GenomicRanges karyoploteR magrittr plotly scales shiny]; }; - CNVrd2 = derive2 { name="CNVrd2"; version="1.30.0"; sha256="03pa0y8rn3jsjw3c93182p4rf966sbn65nv1vywzvkdlraxi6jmi"; depends=[DNAcopy ggplot2 gridExtra IRanges rjags Rsamtools VariantAnnotation]; }; - COCOA = derive2 { name="COCOA"; version="2.6.0"; sha256="1bm45k4c5ykyvwlzywb8kfwsml1b1pq0xh7q7jncgzmm9p0151zk"; depends=[Biobase BiocGenerics ComplexHeatmap data_table fitdistrplus GenomicRanges ggplot2 IRanges MIRA S4Vectors simpleCache tidyr]; }; - CODEX = derive2 { name="CODEX"; version="1.24.0"; sha256="0kbmkbgdg16awqv8c5y8pcxyid0w05hb9wwv2ava4p0bcr22pfls"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb IRanges Rsamtools S4Vectors]; }; - COHCAP = derive2 { name="COHCAP"; version="1.38.0"; sha256="1pa4pd3j1x4s7150q91v8gbz2d43wh62lks1misff1fj8ipshd16"; depends=[BH COHCAPanno gplots RColorBrewer Rcpp RcppArmadillo WriteXLS]; }; - COMPASS = derive2 { name="COMPASS"; version="1.30.0"; sha256="0x2bsm3n4w24rn8mmyv0ximgxxk3dr1x1dcv6dmm5jh7a803jnln"; depends=[abind BiocStyle clue coda data_table dplyr foreach knitr magrittr pdist plyr RColorBrewer Rcpp reshape2 rlang rmarkdown scales tidyr]; }; - CONFESS = derive2 { name="CONFESS"; version="1.20.0"; sha256="1wh1wh7zss6hm7xh6gmxml9snashfl12c1xlxsgm4r30r2crivci"; depends=[changepoint cluster contrast data_table EBImage ecp flexmix flowClust flowCore flowMeans flowMerge flowPeaks foreach ggplot2 limma MASS moments outliers plotrix raster readbitmap reshape2 SamSPECTRAL waveslim wavethresh zoo]; }; - CONSTANd = derive2 { name="CONSTANd"; version="1.0.0"; sha256="0lbb47j79bsbb6m31x31b5n3cf0s5d8phgs245306kal0z8bxx7n"; depends=[]; }; - CORREP = derive2 { name="CORREP"; version="1.58.0"; sha256="071whnm5qx96hff158x6x22wxha6my2zaj37h1b9342jp54p5sjy"; depends=[e1071]; }; - COSNet = derive2 { name="COSNet"; version="1.26.0"; sha256="00x0pngb1m9r4mx531s2b2fb108ni59v7f8qirh76p0ar080rfsp"; depends=[]; }; - CRISPRseek = derive2 { name="CRISPRseek"; version="1.32.0"; sha256="016qhphif69m2z9g0blwmbd93gzf950r3ng7v4h6lcdg9pf7an22"; depends=[BiocGenerics BiocParallel Biostrings BSgenome data_table hash IRanges reticulate rhdf5 S4Vectors seqinr]; }; - CRImage = derive2 { name="CRImage"; version="1.40.0"; sha256="18zb0jyrpm49g7wn1hgsj9dzp7s2mvfw4lnbqbj5qnz6nd6wv9wd"; depends=[aCGH DNAcopy e1071 EBImage foreach MASS sgeostat]; }; - CSAR = derive2 { name="CSAR"; version="1.44.0"; sha256="09sxx2wdwjqxvwfbjwqziq0dv28aw59gpxgs4dwyv9ygsq0zqs0w"; depends=[GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - CSSP = derive2 { name="CSSP"; version="1.30.0"; sha256="0j06zq2qyfsigcrdx024a4lfqb13yhxq9y489vqq4wah16bfcs5n"; depends=[]; }; - CSSQ = derive2 { name="CSSQ"; version="1.4.1"; sha256="0x96pj55kprfmw6zfib9i05yv2100ywadfglvmd5dhkfb2rmsaqw"; depends=[GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; - CTDquerier = derive2 { name="CTDquerier"; version="2.0.0"; sha256="0nwfigg62whiif2dyp61npsnpkwrlydbq3vmnp3l8h3zswqqypg3"; depends=[BiocFileCache ggplot2 gridExtra igraph RCurl S4Vectors stringdist stringr]; }; - CancerInSilico = derive2 { name="CancerInSilico"; version="2.12.0"; sha256="027fbcg8laxd3zi2ppcliz29ly19din8pvfl7cak3kwv17rdbda4"; depends=[BH Rcpp]; }; - CancerSubtypes = derive2 { name="CancerSubtypes"; version="1.18.0"; sha256="1bd8m959jbys8qkyr4z246highg5lfbn2gxah81ya2fk4fxn4jqa"; depends=[cluster ConsensusClusterPlus iCluster impute limma NMF sigclust survival]; }; - Cardinal = derive2 { name="Cardinal"; version="2.10.0"; sha256="1n6k8g1ln3m604hrfxzyfvfwn61kl4lq4kd2rk56fbdamyra8x79"; depends=[Biobase BiocGenerics BiocParallel dplyr EBImage irlba lattice magrittr Matrix matter mclust nlme ProtGenerics S4Vectors signal sp viridisLite]; }; - Category = derive2 { name="Category"; version="2.58.0"; sha256="0f76pb7h8qc51mca5pq00m9p02sbkcj6ywfzli20qai2ykpfr71x"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI genefilter graph GSEABase Matrix RBGL]; }; - CausalR = derive2 { name="CausalR"; version="1.24.0"; sha256="0944av5ibrqwqd2915sm1zwv6kxqm3r1y06qz7j3v9wvj0cjj6hb"; depends=[igraph]; }; - CeTF = derive2 { name="CeTF"; version="1.4.5"; sha256="0x83h2ddllc26mhv0k94j3cgszmqdgz7cd8z9gf7l4is94nfs3kv"; depends=[circlize clusterProfiler ComplexHeatmap DESeq2 dplyr GenomicTools GenomicTools_fileHandler GGally ggnetwork ggplot2 ggpubr ggrepel igraph Matrix network Rcpp RcppArmadillo RCy3 S4Vectors SummarizedExperiment WebGestaltR]; }; - CellBench = derive2 { name="CellBench"; version="1.8.0"; sha256="1bfgyz6ls8psihyhppdjwdfvhp27n71s7xp51j9pr76csdyqmkq6"; depends=[BiocFileCache BiocGenerics BiocParallel dplyr glue lubridate magrittr memoise purrr rappdirs rlang SingleCellExperiment tibble tidyr tidyselect]; }; - CellMapper = derive2 { name="CellMapper"; version="1.18.0"; sha256="12y40vz4580qd4jl7qr7da0srd00pahsbr4hz6vg5dnxx4ismvgf"; depends=[S4Vectors]; }; - CellMixS = derive2 { name="CellMixS"; version="1.8.0"; sha256="0k3i0gvqi06drzmr1q1xwlk7sd2zw63ribkz6r0f4qzw5v32063x"; depends=[BiocGenerics BiocNeighbors BiocParallel cowplot dplyr ggplot2 ggridges kSamples magrittr purrr scater SingleCellExperiment SummarizedExperiment tidyr viridis]; }; - CellNOptR = derive2 { name="CellNOptR"; version="1.38.0"; sha256="0k63yvwg02ppn7c4axm46pcv668771ilza88i6gz1aljpp4h6csj"; depends=[ggplot2 graph hash igraph RBGL RCurl Rgraphviz stringi stringr XML]; }; - CellScore = derive2 { name="CellScore"; version="1.12.0"; sha256="1lmb7g9j2xd637swnqxrkjxrwn82nv2pxqlqkwi4b1saipjvpjhh"; depends=[Biobase gplots lsa RColorBrewer squash]; }; - CellTrails = derive2 { name="CellTrails"; version="1.10.0"; sha256="0gi8yksgaf068bka0n85dw8ccz9mbg6mrvipr6frlbxzapdj2v38"; depends=[Biobase BiocGenerics cba dendextend dtw EnvStats ggplot2 ggrepel igraph maptree mgcv reshape2 Rtsne SingleCellExperiment SummarizedExperiment]; }; - CellaRepertorium = derive2 { name="CellaRepertorium"; version="1.2.0"; sha256="1505jfc8fnp2xrfr2fykwdm2hzadivgfy5440ynvzva8gkdnj1h2"; depends=[BiocGenerics Biostrings dplyr forcats Matrix progress purrr Rcpp reshape2 rlang S4Vectors stringr tibble tidyr]; }; - CelliD = derive2 { name="CelliD"; version="1.0.0"; sha256="1710f83w6hirn861qmnn2namicyy9738l2rryza1j5d33iv82rmj"; depends=[BiocParallel data_table fastmatch fgsea ggplot2 glue irlba Matrix matrixStats pbapply Rcpp RcppArmadillo reticulate Rtsne scater Seurat SingleCellExperiment stringr SummarizedExperiment tictoc umap]; }; - ChAMP = derive2 { name="ChAMP"; version="2.22.0"; sha256="1c3qls8bd6xq6gby962jj5p0niwsa7s3yxrpi15lsgvcdchq6d0w"; depends=[bumphunter ChAMPdata combinat dendextend DMRcate DNAcopy doParallel DT GenomicRanges ggplot2 globaltest goseq Hmisc Illumina450ProbeVariants_db IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b4_hg19 IlluminaHumanMethylationEPICmanifest illuminaio impute isva kpmt limma marray matrixStats minfi missMethyl plotly plyr preprocessCore prettydoc quadprog qvalue RColorBrewer rmarkdown RPMM shiny shinythemes sva wateRmelon]; }; - ChIC = derive2 { name="ChIC"; version="1.12.0"; sha256="0ii992knxs043h0yzwg04x1arcm9f30hphyk0brwar1irawhsh4i"; depends=[BiocGenerics caret caTools ChIC_data genomeIntervals GenomicRanges IRanges progress randomForest Rsamtools S4Vectors spp]; }; - ChIPComp = derive2 { name="ChIPComp"; version="1.22.0"; sha256="1kfxjh1mynrgqsy2q6byf03cbymqc8w7l7672iyd0wj5qzlif4h5"; depends=[BiocGenerics BSgenome_Hsapiens_UCSC_hg19 BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicRanges IRanges limma Rsamtools rtracklayer S4Vectors]; }; - ChIPQC = derive2 { name="ChIPQC"; version="1.28.0"; sha256="05k9pln5yfq00i5qrcm7z5wyri827447pai7f6miqam4pc9npamg"; depends=[Biobase BiocGenerics BiocParallel chipseq DiffBind GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gtools IRanges Nozzle_R1 reshape2 Rsamtools S4Vectors TxDb_Celegans_UCSC_ce6_ensGene TxDb_Dmelanogaster_UCSC_dm3_ensGene TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene TxDb_Rnorvegicus_UCSC_rn4_ensGene]; }; - ChIPXpress = derive2 { name="ChIPXpress"; version="1.36.0"; sha256="0b69c680y0x3h6rrsibyqvfb4py7lyidgw3qm6x9sf5l8jb8isbn"; depends=[affy biganalytics bigmemory Biobase ChIPXpressData frma GEOquery]; }; - ChIPanalyser = derive2 { name="ChIPanalyser"; version="1.14.0"; sha256="1kd8aj3vsylr5xqiq25arf5x3zjfqz9r2x22vai2aj7dzlcj7mmf"; depends=[BiocManager Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges RcppRoll ROCR rtracklayer S4Vectors]; }; - ChIPexoQual = derive2 { name="ChIPexoQual"; version="1.16.0"; sha256="0fbrf5s6pz115djm7xw95k1d0p7svi40aacbb3d52wmx5azwj424"; depends=[BiocParallel biovizBase broom data_table dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 hexbin IRanges RColorBrewer rmarkdown Rsamtools S4Vectors scales viridis]; }; - ChIPpeakAnno = derive2 { name="ChIPpeakAnno"; version="3.26.4"; sha256="1iqzm7pifl9zrw3s06i6h85n1p01pd06vh1a93izyfhgybxn262d"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings DBI dplyr ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 graph InteractionSet IRanges KEGGREST matrixStats multtest RBGL regioneR Rsamtools rtracklayer S4Vectors SummarizedExperiment VennDiagram]; }; - ChIPseeker = derive2 { name="ChIPseeker"; version="1.28.3"; sha256="18hdgml80770c0xgd06zrl8px1ql9fa65rirfkq07z7rzpnd23rw"; depends=[AnnotationDbi BiocGenerics boot dplyr enrichplot GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gplots gtools IRanges magrittr plotrix RColorBrewer rtracklayer S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene]; }; - ChIPseqR = derive2 { name="ChIPseqR"; version="1.46.0"; sha256="1mf51s05g0cg75yvp6k18lfwq8bs396xa3g7csbr93q8fgmjzl5q"; depends=[BiocGenerics Biostrings fBasics GenomicRanges HilbertVis IRanges S4Vectors ShortRead timsac]; }; - ChIPsim = derive2 { name="ChIPsim"; version="1.46.0"; sha256="15ipz9s8yv1i4zk5szfm0y5c6iwlp54zx6xh0rjxa3v81vrvw0qb"; depends=[Biostrings IRanges ShortRead XVector]; }; - ChemmineOB = derive2 { name="ChemmineOB"; version="1.30.0"; sha256="0hr8l3ccgys3hjb1f68ldv0yblblxyhr8f7fhnlpw4d7bi6akmsf"; depends=[BH BiocGenerics Rcpp zlibbioc]; }; - ChemmineR = derive2 { name="ChemmineR"; version="3.44.0"; sha256="1z59npqk7hnqzhjdnry6lfqlyxfzwqprp7bmbdzs4rp22pzcv1v8"; depends=[base64enc BH BiocGenerics DBI digest DT ggplot2 gridExtra png Rcpp RCurl rjson rsvg]; }; - Chicago = derive2 { name="Chicago"; version="1.20.0"; sha256="0dkwy6pfvzd7g4qmhjl24ypn92l78w1zy0ajhcxgg39f7zsq883x"; depends=[data_table Delaporte Hmisc MASS matrixStats]; }; - ChromHeatMap = derive2 { name="ChromHeatMap"; version="1.46.0"; sha256="0vxhnw52j0wq9qxdpphh9383g0sh4rkqqw91x83pnxvp8j349yh4"; depends=[annotate AnnotationDbi Biobase BiocGenerics GenomicRanges IRanges rtracklayer]; }; - ChromSCape = derive2 { name="ChromSCape"; version="1.2.62"; sha256="1l681lq3211ly4rkcipbwz207w2rg1djmzzxwpvxqwkyjq7drbya"; depends=[batchelor BiocParallel colorRamps colourpicker ConsensusClusterPlus coop DelayedArray dplyr DT edgeR forcats fs GenomicRanges ggplot2 IRanges irlba jsonlite kableExtra Matrix matrixTests msigdbr plotly qs qualV Rcpp rlist Rsamtools rtracklayer Rtsne S4Vectors scater scran shiny shinycssloaders shinydashboard shinydashboardPlus shinyFiles shinyhelper shinyjs shinyWidgets SingleCellExperiment stringdist SummarizedExperiment Sushi tibble tidyr umap viridis]; }; - CiteFuse = derive2 { name="CiteFuse"; version="1.4.0"; sha256="1id9lnfzvcpv4mvvxm5q7q0f1yv7qcgn4ipdzfn5hg6w5v0riid4"; depends=[cowplot dbscan ggplot2 ggraph ggridges gridExtra igraph Matrix mixtools pheatmap propr randomForest reshape2 rhdf5 rlang Rtsne S4Vectors scales scran SingleCellExperiment SummarizedExperiment uwot]; }; - ClassifyR = derive2 { name="ClassifyR"; version="2.12.0"; sha256="1w18m7q4p55kgzr7h0ikdkr9kk5ygvjcfqv12z5nawjv6hib58cv"; depends=[BiocParallel locfit MultiAssayExperiment plyr S4Vectors]; }; - Clomial = derive2 { name="Clomial"; version="1.28.0"; sha256="01hxwqp29mmmz4f8ii8c7w2hzi44dkd86043dzsdvlywkqsw0130"; depends=[matrixStats permute]; }; - Clonality = derive2 { name="Clonality"; version="1.40.0"; sha256="0wzkidwl5gbr45f71ca4azhd2hgikvkf8nx759gilw51a63pvmd4"; depends=[DNAcopy]; }; - CluMSID = derive2 { name="CluMSID"; version="1.8.0"; sha256="0b9rfrzgaxhm0mrqfqqmbpkkdyy26n6c7y7ahn1r4kj56jfp7vpp"; depends=[ape Biobase dbscan GGally ggplot2 gplots MSnbase mzR network plotly RColorBrewer S4Vectors sna]; }; - ClusterJudge = derive2 { name="ClusterJudge"; version="1.14.0"; sha256="1zn4xv3sv7mb7bq7765qprgi67716sl4y7f7qq9q2pclsldqxn4q"; depends=[httr infotheo jsonlite lattice latticeExtra]; }; - ClusterSignificance = derive2 { name="ClusterSignificance"; version="1.20.0"; sha256="13zfji0fx16b62hswnpj0c0wwvb4sfd7lyymkc83nf0dnhws3qn0"; depends=[pracma princurve RColorBrewer scatterplot3d]; }; - CoCiteStats = derive2 { name="CoCiteStats"; version="1.64.0"; sha256="10jm5r6jq9vs4gm4h6jmrcdnxji03lr85i0ccpvc66k6svdqbnp1"; depends=[AnnotationDbi org_Hs_eg_db]; }; - CoGAPS = derive2 { name="CoGAPS"; version="3.12.0"; sha256="0smswyc948jz515h4nf36zhphvy4fv6glh74chji8bazhv5k17pa"; depends=[BH BiocParallel cluster gplots RColorBrewer Rcpp rhdf5 S4Vectors SingleCellExperiment SummarizedExperiment]; }; - CoRegNet = derive2 { name="CoRegNet"; version="1.30.0"; sha256="11zw1wy1zd3dw2swg6ccipwblj82xglkd6lmyxf60y1s70cbsxzq"; depends=[arules igraph shiny]; }; - ComPrAn = derive2 { name="ComPrAn"; version="1.0.0"; sha256="0cabgv8fi54flycax69pan8hcxrsaa9qk8ps0643xhhymqr0gdgx"; depends=[data_table dplyr DT forcats ggplot2 magrittr purrr RColorBrewer rio rlang scales shiny shinydashboard shinyjs stringr tibble tidyr VennDiagram]; }; - CompGO = derive2 { name="CompGO"; version="1.28.0"; sha256="16nlrk9wbxj51y8s7s58mdhpi70ghfacxi283406gwya3cm79f0n"; depends=[GenomicFeatures ggplot2 pathview pcaMethods reshape2 Rgraphviz rtracklayer TxDb_Mmusculus_UCSC_mm9_knownGene]; }; - ComplexHeatmap = derive2 { name="ComplexHeatmap"; version="2.8.0"; sha256="0jl96msj1njdrvngg68s50vmphvhi2lfwlv34x07pcdzgkjjs41f"; depends=[Cairo circlize clue colorspace digest doParallel foreach GetoptLong GlobalOptions IRanges matrixStats png RColorBrewer]; }; - ConsensusClusterPlus = derive2 { name="ConsensusClusterPlus"; version="1.56.0"; sha256="163nr50nyvwrsajmm0cgxp70pqk61mgw0k7ams694hcb42162j8b"; depends=[ALL Biobase cluster]; }; - CopyNumberPlots = derive2 { name="CopyNumberPlots"; version="1.8.0"; sha256="0gza6a06jf161r88f4sm4l51qpb94x05wapy0750w76pv148blq9"; depends=[cn_mops GenomeInfoDb GenomicRanges IRanges karyoploteR regioneR rhdf5 Rsamtools SummarizedExperiment VariantAnnotation]; }; - CopywriteR = derive2 { name="CopywriteR"; version="2.24.0"; sha256="0pacs714d9b1fdz68pp9ca0x77d376s19lxb82np4l9fgx0rgkxp"; depends=[BiocParallel chipseq CopyhelpeR data_table DNAcopy futile_logger GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges matrixStats Rsamtools S4Vectors]; }; - CoreGx = derive2 { name="CoreGx"; version="1.4.2"; sha256="1xn4fj6djyg5w8yg7170wfj0mllazmdxhwng013zfg1qynpxx20f"; depends=[Biobase BiocGenerics BiocParallel crayon data_table glue lsa MatrixGenerics MultiAssayExperiment piano rlang S4Vectors SummarizedExperiment]; }; - Cormotif = derive2 { name="Cormotif"; version="1.38.0"; sha256="0mkbj09rdxvcf4dmj5ri2099rs5k5391pdiw8kgj79framjjzmdg"; depends=[affy limma]; }; - CountClust = derive2 { name="CountClust"; version="1.20.0"; sha256="0prnv10zib8m21n5iv8gjkin09j9kj96aidjaylgpzc3a7f74286"; depends=[cowplot flexmix ggplot2 gtools limma maptpx picante plyr reshape2 slam SQUAREM]; }; - CoverageView = derive2 { name="CoverageView"; version="1.30.0"; sha256="1xhirbjdw09cqm4xvysxqicvqjbahavwvs7shg4cb05gwyd2ha8g"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; }; - CrispRVariants = derive2 { name="CrispRVariants"; version="1.20.0"; sha256="1izsd5q8s9fi17vbs3lgp06d682lfcarca68n3x9wq9gs2bzlrss"; depends=[AnnotationDbi BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges reshape2 Rsamtools S4Vectors]; }; - CytoDx = derive2 { name="CytoDx"; version="1.12.0"; sha256="0yanb35bwywd5z8drd6vsw1dca8cp4znwnip7zvw8ssa41ix2zqg"; depends=[doParallel dplyr flowCore glmnet rpart rpart_plot]; }; - CytoGLMM = derive2 { name="CytoGLMM"; version="1.0.0"; sha256="1s5sbiagi0zgdldpwkm72mlmrv85dzvbc299p9q1yrxiyaq3gmbp"; depends=[BiocParallel caret cowplot doParallel dplyr factoextra flexmix ggplot2 ggrepel logging magrittr MASS Matrix mbest pheatmap RColorBrewer rlang speedglm stringr strucchange tibble tidyr]; }; - CytoML = derive2 { name="CytoML"; version="2.4.0"; sha256="0ixy7mmnipk8wy61wz6qy7jfbc5zhs6p5iqaii8hdprjnb841ri7"; depends=[base64enc BH Biobase corpcor cytolib data_table dplyr flowCore flowWorkspace ggcyto graph jsonlite lattice openCyto plyr RBGL Rcpp RcppArmadillo RcppParallel Rgraphviz Rhdf5lib RProtoBufLib RUnit tibble XML xml2 yaml]; }; - CytoTree = derive2 { name="CytoTree"; version="1.2.0"; sha256="1vmqfs0nns9qfx726z67vbxg2lhi4zsnznk9d4hmm1k0acv96k62"; depends=[Biobase BiocNeighbors cluster flowCore FlowSOM flowUtils ggplot2 gmodels igraph limma Matrix matrixStats mclust pheatmap prettydoc RANN Rcpp Rtsne scatterpie scatterplot3d stringr sva umap]; }; - DAMEfinder = derive2 { name="DAMEfinder"; version="1.4.0"; sha256="18h1xgj2yz89y154cnfqnr6rfnp11ccfvsvslpdxfjb7icix682n"; depends=[BiocGenerics Biostrings bumphunter cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges limma plyr readr reshape2 Rsamtools S4Vectors stringr SummarizedExperiment VariantAnnotation]; }; - DAPAR = derive2 { name="DAPAR"; version="1.24.8"; sha256="12cfblknbp0119jmnzlh4q6bzvj4sinch49rrh7502gf7j20jidc"; depends=[AnnotationDbi apcluster Biobase Cairo cluster clusterProfiler cp4p DAPARdata dendextend diptest doParallel dplyr factoextra FactoMineR forcats foreach ggplot2 gplots graph highcharter igraph imp4p impute knitr lattice limma lme4 Matrix Mfuzz MSnbase multcomp norm openxlsx pcaMethods png preprocessCore purrr RColorBrewer readxl reshape2 scales siggenes stringr tibble tidyr tidyverse tmvtnorm vioplot visNetwork vsn]; }; - DART = derive2 { name="DART"; version="1.40.0"; sha256="18s0sbbsplh2kbn5j4d9h438kmjys31bcl4vnrazvcrvmbqf3bzd"; depends=[igraph]; }; - DECIPHER = derive2 { name="DECIPHER"; version="2.20.0"; sha256="0mr7glkx2d37l9nszs52m0kycpm14vxl5gdp3z7i5j7yig1sw2nk"; depends=[Biostrings DBI IRanges RSQLite S4Vectors XVector]; }; - DEComplexDisease = derive2 { name="DEComplexDisease"; version="1.12.0"; sha256="09fyr3i3dv6dg08cffkg6s5cdkz51s19p9ql52v98vw4xn8v9hka"; depends=[BiocParallel ComplexHeatmap DESeq2 edgeR Rcpp SummarizedExperiment]; }; - DEFormats = derive2 { name="DEFormats"; version="1.20.0"; sha256="1hkrqrqyk9hdlsl7zyy6vjv2q0v7h11yvc4l41zlc9zn7acqf27j"; depends=[checkmate data_table DESeq2 edgeR GenomicRanges S4Vectors SummarizedExperiment]; }; - DEGraph = derive2 { name="DEGraph"; version="1.44.0"; sha256="1fyxm479g0dm52hshxrxrazsmz64irr2pbx08y7shb8xwk15ln8x"; depends=[graph KEGGgraph lattice mvtnorm NCIgraph R_methodsS3 R_utils RBGL Rgraphviz rrcov]; }; - DEGreport = derive2 { name="DEGreport"; version="1.28.0"; sha256="1qxiz68ph4sknrvd3qfx2fqag74gfl9j22hkaaj3hdmskzk5rd4r"; depends=[Biobase BiocGenerics broom circlize cluster ComplexHeatmap ConsensusClusterPlus cowplot DESeq2 dplyr edgeR ggdendro ggplot2 ggrepel knitr lasso2 logging magrittr Nozzle_R1 psych RColorBrewer reshape rlang S4Vectors scales stringr SummarizedExperiment tibble tidyr]; }; - DEGseq = derive2 { name="DEGseq"; version="1.46.0"; sha256="05hjmdg8cjwymzsgr0ra29znyx20jmrsn10m4nkndipiacs701ha"; depends=[qvalue]; }; - DEP = derive2 { name="DEP"; version="1.14.0"; sha256="1larrj4wyb48wfnn1wd9kib6bklm41ggs4fw85z021rmsag37dkx"; depends=[assertthat circlize cluster ComplexHeatmap dplyr DT fdrtool ggplot2 ggrepel gridExtra imputeLCMD limma MSnbase purrr RColorBrewer readr rmarkdown shiny shinydashboard SummarizedExperiment tibble tidyr vsn]; }; - DEScan2 = derive2 { name="DEScan2"; version="1.12.0"; sha256="0f40ffrxg54d0a3jqv2dp09i6d979ycl89ipphk6gm1gi6a1xab3"; depends=[BiocGenerics BiocParallel ChIPpeakAnno data_table DelayedArray GenomeInfoDb GenomicAlignments GenomicRanges glue IRanges plyr Rcpp RcppArmadillo rtracklayer S4Vectors SummarizedExperiment]; }; - DESeq2 = derive2 { name="DESeq2"; version="1.32.0"; sha256="0r1brwmj7av0bj72jajn27vx3zs1bgg8qfbhf02fln6kf7im4kaz"; depends=[Biobase BiocGenerics BiocParallel genefilter geneplotter GenomicRanges ggplot2 IRanges locfit Rcpp RcppArmadillo S4Vectors SummarizedExperiment]; }; - DEWSeq = derive2 { name="DEWSeq"; version="1.6.0"; sha256="0v48w4va545gi6mkyfwfqs92zc656m6298hh2pk32w49148hbc04"; depends=[BiocGenerics BiocParallel data_table DESeq2 GenomeInfoDb GenomicRanges R_utils S4Vectors SummarizedExperiment]; }; - DEXSeq = derive2 { name="DEXSeq"; version="1.38.0"; sha256="1zywh30f4j4rj0f9w6yk5xr9mvdbg8gicy3wsb8yxdnamadyr7x4"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel biomaRt DESeq2 genefilter geneplotter GenomicRanges hwriter IRanges RColorBrewer Rsamtools S4Vectors statmod stringr SummarizedExperiment]; }; - DEqMS = derive2 { name="DEqMS"; version="1.10.0"; sha256="1p7xbg02z1nilvr0byh63gzslq20wfhd104mp71ghnab2kkngq31"; depends=[ggplot2 limma]; }; - DEsingle = derive2 { name="DEsingle"; version="1.12.0"; sha256="1ddk7rixfy93pycaarzg9397md942dqhv54cyig0i0n45b5gzv0f"; depends=[bbmle BiocParallel gamlss MASS Matrix maxLik pscl VGAM]; }; - DEsubs = derive2 { name="DEsubs"; version="1.18.0"; sha256="1zk4zn1mmchrqddwxcma0w4z00m5c4xsh6qpz07xccrz7xdn58gj"; depends=[circlize DESeq2 EBSeq edgeR ggplot2 graph igraph jsonlite limma locfit Matrix NBPSeq pheatmap RBGL]; }; - DExMA = derive2 { name="DExMA"; version="1.0.2"; sha256="0gfpqhb2ynrhdm17mb30b5xihy674gd5cmy3l1n4g0dkmd018hdh"; depends=[Biobase DExMAdata GEOquery impute limma pheatmap plyr scales snpStats sva swamp]; }; - DFP = derive2 { name="DFP"; version="1.50.0"; sha256="17mnn1svygksb0fs074pfp1mchxz39sp6j57k5wrz75rnwbd3b6b"; depends=[Biobase]; }; - DIAlignR = derive2 { name="DIAlignR"; version="2.0.0"; sha256="0x0f0zjk7wshk34xf8cbh8si46n2ji7i06m3ihsp2bfmcdfs82ak"; depends=[ape bit64 data_table DBI dplyr ggplot2 magrittr mzR phangorn pracma Rcpp RcppEigen reticulate rlang RMSNumpress RSQLite signal tidyr zoo]; }; - DMCFB = derive2 { name="DMCFB"; version="1.6.0"; sha256="0zsqzkv8zvbn4qq6vmvkc4prx0w0w99sqz5pwr2vadsns53dif9i"; depends=[arm benchmarkme BiocParallel data_table fastDummies GenomicRanges IRanges MASS matrixStats rtracklayer S4Vectors speedglm SummarizedExperiment tibble]; }; - DMCHMM = derive2 { name="DMCHMM"; version="1.14.0"; sha256="1is7q7jyrvam677s9lgrbyfj4dhij07lc5agh7q80b0hjx2g3ql6"; depends=[BiocParallel calibrate fdrtool GenomicRanges IRanges multcomp rtracklayer S4Vectors SummarizedExperiment]; }; - DMRScan = derive2 { name="DMRScan"; version="1.14.0"; sha256="0b4ni5gn36sp8scm535ka51n67pvlzzf0dpzdbjcsrdz5rpma16s"; depends=[GenomeInfoDb GenomicRanges IRanges MASS Matrix mvtnorm RcppRoll]; }; - DMRcaller = derive2 { name="DMRcaller"; version="1.24.0"; sha256="1hhb26vmnc4cn35474kkc56ahpdj23mhi9dcgv4r095ba7z6kw32"; depends=[betareg GenomicRanges IRanges Rcpp RcppRoll S4Vectors]; }; - DMRcate = derive2 { name="DMRcate"; version="2.6.0"; sha256="0l50i2qp1yngzc6j7qskr7nk3x9ja7rynkm8bp522c3994kmhig8"; depends=[bsseq DSS edgeR ExperimentHub GenomeInfoDb GenomicRanges Gviz IRanges limma minfi missMethyl plyr S4Vectors SummarizedExperiment]; }; - DMRforPairs = derive2 { name="DMRforPairs"; version="1.28.0"; sha256="1khfcs8z60g6m64awacpaplci3c3pv9n3z0ajj5h7cf3nn841qxp"; depends=[GenomicRanges Gviz R2HTML]; }; - DNABarcodeCompatibility = derive2 { name="DNABarcodeCompatibility"; version="1.8.0"; sha256="1dls7m5szdyd2hd7w6mwbj5bsn9ij1zzm0gr38bylkj1jp82xjdw"; depends=[DNABarcodes dplyr numbers purrr stringr tidyr]; }; - DNABarcodes = derive2 { name="DNABarcodes"; version="1.22.0"; sha256="1wiqmzjcb7flp7ldcgbx91asxxrmm1rg9pcfljniab9xcsldhksp"; depends=[BH Matrix Rcpp]; }; - DNAcopy = derive2 { name="DNAcopy"; version="1.66.0"; sha256="0mgq814f6c2271d2lxg763bsnv3ma4ari5xa4x1rbksv8yvcjc4d"; depends=[]; }; - DNAshapeR = derive2 { name="DNAshapeR"; version="1.20.0"; sha256="09271m79llrs48h8723qsvl4aigjwaif6is0mkdk2dpqi80aza3k"; depends=[Biostrings fields GenomicRanges Rcpp]; }; - DOSE = derive2 { name="DOSE"; version="3.18.3"; sha256="09blmrgzxaknn263zf3zqc5yx27wjwznsr8lqsm118k4wpfxj504"; depends=[AnnotationDbi BiocParallel DO_db fgsea ggplot2 GOSemSim qvalue reshape2]; }; - DRIMSeq = derive2 { name="DRIMSeq"; version="1.20.0"; sha256="1rswd4lks4v6nfkkiqn2spicjpwsbi2sg8wz44bhf2idxc5mlad4"; depends=[BiocGenerics BiocParallel edgeR GenomicRanges ggplot2 IRanges limma MASS reshape2 S4Vectors]; }; - DSS = derive2 { name="DSS"; version="2.40.0"; sha256="094z7n8m4mygvxpl7vlh8ls4aggrxcmsc0wh8khnz61sfsv2q15l"; depends=[Biobase BiocParallel bsseq DelayedArray]; }; - DTA = derive2 { name="DTA"; version="2.38.0"; sha256="10fnqvip3sxxpxq6y9565gkrzk2gr4269l5xcdph4awrjlq6pshz"; depends=[LSD scatterplot3d]; }; - DaMiRseq = derive2 { name="DaMiRseq"; version="2.4.3"; sha256="0mr1nzhyiz9h57v51m1k58wz2iyw0ir5xilsgg3y5qdx6b5alyl9"; depends=[arm caret corrplot DESeq2 e1071 EDASeq edgeR FactoMineR FSelector ggplot2 Hmisc ineq kknn limma lubridate MASS pheatmap pls plsVarSel plyr randomForest RColorBrewer reshape2 RSNNS SummarizedExperiment sva]; }; - DeMAND = derive2 { name="DeMAND"; version="1.22.0"; sha256="1amm5fr7jsrlq0qzvf10ibfnkq2xwrn2rf5j7b7ssp3srs98bir3"; depends=[KernSmooth]; }; - DeMixT = derive2 { name="DeMixT"; version="1.8.0"; sha256="0z2fb2j4a04fa23d32dvp3cxid8phmwbrd8d66c8llivxppcdd35"; depends=[base64enc ggplot2 KernSmooth knitr matrixcalc matrixStats Rcpp SummarizedExperiment truncdist]; }; - DeconRNASeq = derive2 { name="DeconRNASeq"; version="1.34.0"; sha256="011v141dvi62f8ff6svq481x0sngxdkfryl1jr1xrbi69wjyr074"; depends=[ggplot2 limSolve pcaMethods]; }; - DeepBlueR = derive2 { name="DeepBlueR"; version="1.18.0"; sha256="0hrqdvqaz7z38pl71pzk9py6bx79rks8cc5mg2biwcansmyk1rvp"; depends=[data_table diffr dplyr filehash foreach GenomeInfoDb GenomicRanges R_utils RCurl rjson rtracklayer settings stringr withr XML]; }; - DeepPINCS = derive2 { name="DeepPINCS"; version="1.0.2"; sha256="1p27ff1d8wxirm781mp59n6hn39m30dvq2r0qwp7i5ny3ww5gav7"; depends=[CatEncoders keras matlab PRROC purrr rcdk reticulate stringdist tensorflow tokenizers ttgsea webchem]; }; - DegNorm = derive2 { name="DegNorm"; version="1.2.0"; sha256="12ilvdcfjh9r2q8i28kwbbh26mm583fh2n3kznvp1v6xx53zxcg1"; depends=[data_table doParallel foreach GenomicAlignments GenomicFeatures GenomicRanges ggplot2 heatmaply IRanges plotly plyr Rcpp RcppArmadillo Rsamtools S4Vectors viridis]; }; - DelayedArray = derive2 { name="DelayedArray"; version="0.18.0"; sha256="0w632262dqzcnvq9s6jvc7naz93dayx51fsv05s0zb6cjwygbqjr"; depends=[BiocGenerics IRanges Matrix MatrixGenerics S4Vectors]; }; - DelayedDataFrame = derive2 { name="DelayedDataFrame"; version="1.8.0"; sha256="06w8asdcaksp7q20jb5x7fp3a0gz2nk2a0zdjvq39a1m53xa804d"; depends=[BiocGenerics DelayedArray S4Vectors]; }; - DelayedMatrixStats = derive2 { name="DelayedMatrixStats"; version="1.14.3"; sha256="1zxs2wjnsq9w1cl4andsd7y9xsdnl1an55khw9viaq758m7hhbcn"; depends=[DelayedArray IRanges Matrix MatrixGenerics matrixStats S4Vectors sparseMatrixStats]; }; - DelayedRandomArray = derive2 { name="DelayedRandomArray"; version="1.0.0"; sha256="17mpd658k0pmrd757i6x2a9rg7w4x8cwn704h8ayfmbki8zc11di"; depends=[BH DelayedArray dqrng Rcpp]; }; - DepecheR = derive2 { name="DepecheR"; version="1.8.0"; sha256="04vxc43p3kpsx0vksk2nwmy9p56h35z2mc8j9p2wm29zaz1y8j3p"; depends=[beanplot doSNOW dplyr FNN foreach ggplot2 gmodels gplots MASS matrixStats mixOmics moments Rcpp RcppEigen reshape2 robustbase viridis]; }; - DiffBind = derive2 { name="DiffBind"; version="3.2.7"; sha256="01jfxcj5c0088vvsi3pz8fs0ka6n12l2j8s1d0rpqwa1y0444x7z"; depends=[amap apeglm ashr BiocParallel DESeq2 dplyr GenomicAlignments GenomicRanges ggplot2 ggrepel gplots GreyListChIP IRanges lattice limma locfit RColorBrewer Rcpp Rhtslib Rsamtools S4Vectors SummarizedExperiment systemPipeR]; }; - DiffLogo = derive2 { name="DiffLogo"; version="2.16.0"; sha256="1xblwwlddr5093qimzgz30sxpaaiqf32q2daj76i6zhfp4x4wvzi"; depends=[cba]; }; - Director = derive2 { name="Director"; version="1.18.0"; sha256="0yd3k687zlvx3d8ng0i3z1339cmzjb9vwi3sc5jq07xl0yqinvmn"; depends=[htmltools]; }; - DirichletMultinomial = derive2 { name="DirichletMultinomial"; version="1.34.0"; sha256="0ikmj0300lfzj6q1vyahfyx5kwi5h59mds7ym4f2j1bbxqzy6ssl"; depends=[BiocGenerics IRanges S4Vectors]; }; - DiscoRhythm = derive2 { name="DiscoRhythm"; version="1.8.0"; sha256="0wa7y1ffamip7zyg4fvk6fr6lkbif148iv7mwk1m0g7gkzvnfgwa"; depends=[BiocGenerics BiocStyle broom data_table dplyr DT ggExtra ggplot2 gridExtra heatmaply kableExtra knitr magick matrixStats matrixTests MetaCycle plotly reshape2 rmarkdown S4Vectors shiny shinyBS shinycssloaders shinydashboard shinyjs SummarizedExperiment UpSetR VennDiagram viridis zip]; }; - DominoEffect = derive2 { name="DominoEffect"; version="1.12.0"; sha256="1rlhg0bbiy5bc6ivipkrdfvl2idb3mjx7hinrqv31vf6qlfh56m9"; depends=[AnnotationDbi biomaRt Biostrings data_table GenomeInfoDb GenomicRanges IRanges SummarizedExperiment VariantAnnotation]; }; - Doscheda = derive2 { name="Doscheda"; version="1.14.0"; sha256="11qw60vl4h4pav9w59hfcwjc5gc6rvwj9b4rrdw3dkd5kpkamshh"; depends=[affy calibrate corrgram drc DT ggplot2 gridExtra httr jsonlite limma matrixStats prodlim readxl reshape2 shiny shinydashboard stringr vsn]; }; - DriverNet = derive2 { name="DriverNet"; version="1.32.0"; sha256="0qivc30n3cq2f1kfb21azd7kwx1gmy63sy4xyk6mwwgc3zgd5xic"; depends=[]; }; - DropletUtils = derive2 { name="DropletUtils"; version="1.12.3"; sha256="11s0dk4m4qinbfnhsilxna536ys1ndkzd2cjig8sbky4dvx7r584"; depends=[beachmat BH BiocGenerics BiocParallel DelayedArray DelayedMatrixStats dqrng edgeR HDF5Array Matrix R_utils Rcpp rhdf5 Rhdf5lib S4Vectors scuttle SingleCellExperiment SummarizedExperiment]; }; - DrugVsDisease = derive2 { name="DrugVsDisease"; version="2.34.0"; sha256="0qbaqxn8m7l0nzmmr0icn8fqgc3v21rraqnxrjz7nbh9fzc3klhd"; depends=[affy annotate ArrayExpress BiocGenerics biomaRt cMap2data DrugVsDiseasedata GEOquery hgu133a_db hgu133a2_db hgu133plus2_db limma qvalue RUnit xtable]; }; - Dune = derive2 { name="Dune"; version="1.4.0"; sha256="11ya7jf6gc5z0xb7cn793dl4bhw83xwsr6k294w41xrkvqxw4iif"; depends=[aricode BiocParallel dplyr gganimate ggplot2 magrittr purrr RColorBrewer SummarizedExperiment tidyr]; }; - DynDoc = derive2 { name="DynDoc"; version="1.70.0"; sha256="08nk3rf43djas3vpr1rnn9b529frqhd6bxd2wzjh8z01fqi8fx4h"; depends=[]; }; - EBImage = derive2 { name="EBImage"; version="4.34.0"; sha256="1z3cxxg593d66nczz5hh2hdj1d87wc0lxrzc5sn6bp43n351q8h3"; depends=[abind BiocGenerics fftwtools htmltools htmlwidgets jpeg locfit png RCurl tiff]; }; - EBSEA = derive2 { name="EBSEA"; version="1.20.0"; sha256="1sxqcwz6vm2rcw2k8hc0np1zxmffy1shkfllh4jbrdh0516j2jbm"; depends=[DESeq2 EmpiricalBrownsMethod]; }; - EBSeq = derive2 { name="EBSeq"; version="1.32.0"; sha256="0h5v3vrb90zim80bdnr3aw58g3h7zjqa4l9i0jwx5j19ywf54fdz"; depends=[blockmodeling gplots testthat]; }; - EBSeqHMM = derive2 { name="EBSeqHMM"; version="1.26.0"; sha256="0fzi7060yap5628d7v0qay18k7k6wkjfbv3sfl1xisfkz0rdjvii"; depends=[EBSeq]; }; - EBarrays = derive2 { name="EBarrays"; version="2.56.0"; sha256="1k1kl0m7wzaqpv7i20pfav2a6jf93bhri4w7qdikmvkf011n9422"; depends=[Biobase cluster lattice]; }; - EBcoexpress = derive2 { name="EBcoexpress"; version="1.36.0"; sha256="1df87rl026rzcrhiacqcpwg3wp9r13lxhb7vscw6jmcwyfnhhdmi"; depends=[EBarrays mclust minqa]; }; - EDASeq = derive2 { name="EDASeq"; version="2.26.1"; sha256="0pakcbkalhhqz3d9lpfx3hscf53k24mlmrywxxzfg43yq57srkql"; depends=[AnnotationDbi aroma_light Biobase BiocGenerics BiocManager biomaRt Biostrings GenomicFeatures GenomicRanges IRanges Rsamtools ShortRead]; }; - EGAD = derive2 { name="EGAD"; version="1.20.0"; sha256="05gfzi1lrryx7ssxd7415c2bsmnm33ca32v7hw1dd5jgv30nbcpi"; depends=[Biobase GEOquery gplots igraph impute limma MASS plyr RColorBrewer RCurl zoo]; }; - EGSEA = derive2 { name="EGSEA"; version="1.20.0"; sha256="0wxql39p42craa9z209l9pxr3kqb99kq7y9cwwvkdhp5q2bsfsrj"; depends=[AnnotationDbi Biobase DT edgeR EGSEAdata gage ggplot2 Glimma globaltest gplots GSVA HTMLUtils htmlwidgets hwriter limma metap org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db PADOG pathview plotly RColorBrewer safe stringi topGO]; }; - ELMER = derive2 { name="ELMER"; version="2.16.0"; sha256="07yl4xcymk4km5zglj9hcgdb0hjjrnr374yp6r59j8cz76smym92"; depends=[biomaRt circlize ComplexHeatmap DelayedArray doParallel downloader dplyr ELMER_data GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggpubr ggrepel gridExtra Gviz IRanges lattice magrittr Matrix MultiAssayExperiment plotly plyr progress purrr readr reshape reshape2 rmarkdown rtracklayer rvest S4Vectors scales stringr SummarizedExperiment TCGAbiolinks tibble tidyr xml2]; }; - EMDomics = derive2 { name="EMDomics"; version="2.22.0"; sha256="0m11n9wj6rh5x0fzih8s661h0dziss907bwbc9hnmsjkabvvl39s"; depends=[BiocParallel CDFt emdist ggplot2 matrixStats preprocessCore]; }; - ENmix = derive2 { name="ENmix"; version="1.28.8"; sha256="0fhknqi4mfzg3fzy8krvhcrd2a18wsqdf4b257d5rc3hzj26rvqb"; depends=[AnnotationHub Biobase doParallel dynamicTreeCut ExperimentHub foreach genefilter geneplotter gplots gtools illuminaio impute IRanges irr matrixStats minfi preprocessCore quadprog RPMM S4Vectors SummarizedExperiment]; }; - ERSSA = derive2 { name="ERSSA"; version="1.10.0"; sha256="0ph4bscydwn1a9w91b3ab1lj31kn7ddi9wfm6bhdv949pb4p48xn"; depends=[BiocParallel DESeq2 edgeR ggplot2 plyr RColorBrewer]; }; - EWCE = derive2 { name="EWCE"; version="1.0.1"; sha256="0dyzvkqi0dzrjhs50p1d9kcyyin4vvjjrdjjh7mxwpr4kirxghdh"; depends=[AnnotationHub biomaRt cowplot ewceData ExperimentHub future ggdendro ggplot2 gridExtra HGNChelper limma Matrix reshape2 RNOmni scales stringr SummarizedExperiment]; }; - EmpiricalBrownsMethod = derive2 { name="EmpiricalBrownsMethod"; version="1.20.0"; sha256="1zaz8h2mzh0fnfq9h3yvhnj2mpafd36vwlfa5c92piddrrk9g9q8"; depends=[]; }; - EnMCB = derive2 { name="EnMCB"; version="1.4.1"; sha256="0xhcz7r7vg1n08phdd43i6likn791lrkjzy0wi1hcswmw6p5i7h0"; depends=[boot doParallel foreach ggplot2 glmnet IlluminaHumanMethylation450kanno_ilmn12_hg19 mboost minfi rms survival survivalROC survivalsvm]; }; - EnhancedVolcano = derive2 { name="EnhancedVolcano"; version="1.10.0"; sha256="11p41y2s5iydi7q3fk992jgmx8r0xnh0pv1idjgcpyn36hh2k5x7"; depends=[ggalt ggplot2 ggrastr ggrepel]; }; - EnrichedHeatmap = derive2 { name="EnrichedHeatmap"; version="1.22.0"; sha256="1dd17jlcwvrhzkz8wjcwb3vwkjj137d9gaw036zn9rjhbpznzigm"; depends=[circlize ComplexHeatmap GenomicRanges GetoptLong IRanges locfit matrixStats Rcpp]; }; - EnrichmentBrowser = derive2 { name="EnrichmentBrowser"; version="2.22.2"; sha256="172cgbakc69a7pv4839hywmki606p61qgp9rpxzc9agqcw3xk2aw"; depends=[AnnotationDbi BiocFileCache BiocManager edgeR GO_db graph graphite GSEABase hwriter KEGGgraph KEGGREST limma pathview Rgraphviz S4Vectors safe SPIA SummarizedExperiment]; }; - EpiDISH = derive2 { name="EpiDISH"; version="2.8.0"; sha256="1dlw4pm88w3mdp5ws34qcxy11563znjcj3dk46z1iw1n4mswx3d9"; depends=[e1071 locfdr MASS Matrix matrixStats quadprog stringr]; }; - EpiTxDb = derive2 { name="EpiTxDb"; version="1.4.0"; sha256="0nhlfc5spf55kx5in3b9hndzf8vwp455sxdbyqwvs3zqb4x8isll"; depends=[AnnotationDbi BiocFileCache BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges httr IRanges Modstrings RSQLite S4Vectors tRNAdbImport xml2]; }; - EventPointer = derive2 { name="EventPointer"; version="3.0.0"; sha256="16hs4mlkb76kwnwrxpjlc2bgizzmbv9q0bc194qyr2j9idb3mpxp"; depends=[abind affxparser Biostrings BSgenome cobs doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges glmnet graph igraph IRanges iterators limma lpSolve MASS Matrix matrixStats nnls poibin prodlim qvalue RBGL rhdf5 S4Vectors SGSeq speedglm stringr SummarizedExperiment tximport]; }; - ExCluster = derive2 { name="ExCluster"; version="1.10.0"; sha256="1dgjmqwpma42iy5f25pz9glr2nkm7y285hixnx2mw1xyn28yfjf9"; depends=[GenomicRanges IRanges matrixStats Rsubread rtracklayer]; }; - ExiMiR = derive2 { name="ExiMiR"; version="2.34.0"; sha256="0p95iawzmds5c3j6pxfl7q90nyzy136s1v522sxvwsqg7pwjkrgn"; depends=[affy affyio Biobase limma preprocessCore]; }; - ExperimentHub = derive2 { name="ExperimentHub"; version="2.0.0"; sha256="1mzmw3100lf33yhz27nbxncrjk5bprlackrjcwf8xdhcaidg40p4"; depends=[AnnotationHub BiocFileCache BiocGenerics BiocManager curl rappdirs S4Vectors]; }; - ExperimentHubData = derive2 { name="ExperimentHubData"; version="1.18.0"; sha256="019ni1d2qhadf2xnyz6g79qll6ir7zcizjw0cb56czg9c0cj2nsc"; depends=[AnnotationHubData BiocGenerics BiocManager curl DBI ExperimentHub httr S4Vectors]; }; - ExperimentSubset = derive2 { name="ExperimentSubset"; version="1.2.0"; sha256="0xmh36xhk9arwf9c9w8jvg7ixxxcfv2bc0japyvydsvfyz53k5ss"; depends=[Matrix S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment TreeSummarizedExperiment]; }; - ExploreModelMatrix = derive2 { name="ExploreModelMatrix"; version="1.4.0"; sha256="0frbm8w0ghzs4228k6y2c4h5m93zprl7wbp21pp62fyy5r3w584y"; depends=[cowplot dplyr DT ggplot2 limma magrittr MASS rintrojs S4Vectors scales shiny shinydashboard shinyjs tibble tidyr]; }; - ExpressionAtlas = derive2 { name="ExpressionAtlas"; version="1.20.0"; sha256="1aiciicrf159bkiml8xb3w06f0g2ki94j75gl20680p1bm53ymb3"; depends=[Biobase httr limma S4Vectors SummarizedExperiment XML xml2]; }; - FCBF = derive2 { name="FCBF"; version="2.0.0"; sha256="0zzh21axis90g2vgvm71vb7p2yzks9ijapafyz19j124izwyinsi"; depends=[ggplot2 gridExtra mclust pbapply SummarizedExperiment]; }; - FEAST = derive2 { name="FEAST"; version="1.0.0"; sha256="1md0kd65v0nb9qa3s886jycbhqg0m4wx7n9nkz2270ww5lhgpvca"; depends=[BiocParallel irlba matrixStats mclust SC3 SingleCellExperiment SummarizedExperiment TSCAN]; }; - FELLA = derive2 { name="FELLA"; version="1.12.0"; sha256="0iii0fnralm5a4qarnimc2phynpbwyp7d1zr8jg8j7pr1ylwg3gd"; depends=[igraph KEGGREST Matrix plyr]; }; - FGNet = derive2 { name="FGNet"; version="3.26.0"; sha256="1v2rbiypv3ljv41x55gvyx9rrld13lcn8i6fhjp4vd1vvychg2g3"; depends=[hwriter igraph plotrix png R_utils RColorBrewer reshape2 XML]; }; - FISHalyseR = derive2 { name="FISHalyseR"; version="1.26.0"; sha256="19q7hbzl1bg1kb1jy1pihjgz36mi8ccfinhxs1cd8hksm5wg6jr4"; depends=[abind EBImage]; }; - FRASER = derive2 { name="FRASER"; version="1.4.0"; sha256="03fbargi2q8y1d030laplk8wa3rmld52w2da96d65rg07iidh1aj"; depends=[AnnotationDbi BBmisc Biobase BiocGenerics BiocParallel biomaRt BSgenome cowplot data_table DelayedArray DelayedMatrixStats extraDistr generics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel HDF5Array IRanges matrixStats OUTRIDER pcaMethods pheatmap plotly PRROC R_utils RColorBrewer Rcpp RcppArmadillo rhdf5 Rsamtools Rsubread S4Vectors SummarizedExperiment tibble VGAM]; }; - FRGEpistasis = derive2 { name="FRGEpistasis"; version="1.28.0"; sha256="0dfdbgmp5avw5hw4fwilim47qg8jb4d3r2rx6qmvzi42bcqighmd"; depends=[fda MASS]; }; - FScanR = derive2 { name="FScanR"; version="1.2.0"; sha256="0gxfck1fvnmfzslz4vpfsqcnygjm2s817x1sisaxgyd55v6c5jcq"; depends=[]; }; - FamAgg = derive2 { name="FamAgg"; version="1.20.0"; sha256="0z2nsjvzi80w5dbxjyp51j7cl3ff7ipak02m9p3xqrrnfjba34wp"; depends=[BiocGenerics gap igraph kinship2 Matrix survey]; }; - FastqCleaner = derive2 { name="FastqCleaner"; version="1.10.0"; sha256="06dcnq56fc48sl968fxywsz2d4lipbwkl21wzca2sz52pdfhsh4p"; depends=[Biostrings DT htmltools IRanges Rcpp S4Vectors shiny shinyBS ShortRead]; }; - FilterFFPE = derive2 { name="FilterFFPE"; version="1.2.0"; sha256="1rzl3sw2gsgjdn9is566g5pjlj8imk992angb7m243y5vgqsx9gd"; depends=[doParallel foreach GenomicRanges IRanges Rsamtools S4Vectors]; }; - FindMyFriends = derive2 { name="FindMyFriends"; version="1.22.0"; sha256="124sgww90ab77d3l1spsjlm6483l22qq98v9n8rar30z3a6g1iph"; depends=[Biobase BiocGenerics BiocParallel Biostrings digest dplyr filehash ggdendro ggplot2 gtable igraph IRanges kebabs Matrix Rcpp reshape2 S4Vectors]; }; - FitHiC = derive2 { name="FitHiC"; version="1.18.0"; sha256="1p8a6lis5yswaj647bjw89harlarnsxmvjzz63fn1l6gxrwhh8bx"; depends=[data_table fdrtool Rcpp]; }; - FlowRepositoryR = derive2 { name="FlowRepositoryR"; version="1.23.0"; sha256="04lk2cahf6zqnhpzh0zwas4vmvaz4kcik9ri65bs9d9ximzjam91"; depends=[jsonlite RCurl XML]; }; - FlowSOM = derive2 { name="FlowSOM"; version="2.0.0"; sha256="18h7p7g3w9imyd1c93jllgp4kd74z96cs85wcqfhmd26nx18hl82"; depends=[BiocGenerics colorRamps ConsensusClusterPlus CytoML dplyr flowCore flowWorkspace ggforce ggnewscale ggplot2 ggpointdensity ggpubr ggrepel igraph magrittr pheatmap RColorBrewer rlang Rtsne scattermore tidyr XML]; }; - FoldGO = derive2 { name="FoldGO"; version="1.10.0"; sha256="0j64767cwipwcsgkr5yjhgfdi0fjahvmbrnfl2drn0cxgzrjpb0k"; depends=[ggplot2 tidyr topGO]; }; - FunChIP = derive2 { name="FunChIP"; version="1.18.0"; sha256="0rfqh1217jwmb7shyhil58by4qsfz3wlaa386zbxs0bf82xbkjcg"; depends=[doParallel fda foreach GenomeInfoDb GenomicAlignments GenomicRanges RColorBrewer Rcpp Rsamtools shiny]; }; - GA4GHclient = derive2 { name="GA4GHclient"; version="1.16.0"; sha256="00h6j3bl1m9zd9zqc6cr825y3c0xqcbp1cj9n8sszgbaxjrv353l"; depends=[BiocGenerics Biostrings dplyr GenomeInfoDb GenomicRanges httr IRanges jsonlite S4Vectors VariantAnnotation]; }; - GA4GHshiny = derive2 { name="GA4GHshiny"; version="1.14.0"; sha256="1b0zf8gvnfkgkjnw0wj0ya4dw89kw5r3ajqp569ak7431qr71ir4"; depends=[AnnotationDbi BiocGenerics dplyr DT GA4GHclient GenomeInfoDb GenomicFeatures openxlsx purrr S4Vectors shiny shinyjs shinythemes tidyr]; }; - GAPGOM = derive2 { name="GAPGOM"; version="1.8.0"; sha256="108x2rmbxp9qxmf3w4rji1n7f4lqda10mk09i9mqffdqy3b3p67h"; depends=[AnnotationDbi Biobase BiocFileCache data_table dplyr fastmatch GEOquery GO_db GOSemSim graph igraph magrittr Matrix matrixStats org_Hs_eg_db org_Mm_eg_db plyr RBGL]; }; - GARS = derive2 { name="GARS"; version="1.12.0"; sha256="0r6yvnld94669mw0vbnlzpf6ljxbjixxg51ksvisb8p70gl517a6"; depends=[cluster DaMiRseq ggplot2 MLSeq SummarizedExperiment]; }; - GAprediction = derive2 { name="GAprediction"; version="1.18.0"; sha256="0hnirag3dvf8h9hcirmmpfzwy8xxmn9xk8413z1xcjw3gd8k3bi3"; depends=[glmnet Matrix]; }; - GCSConnection = derive2 { name="GCSConnection"; version="1.4.0"; sha256="19yvq8cngycx08i7s90iqjyc0aww24x0sad491w5gma9xbi9fkig"; depends=[googleAuthR googleCloudStorageR httr jsonlite Rcpp]; }; - GCSFilesystem = derive2 { name="GCSFilesystem"; version="1.2.0"; sha256="0nbarxyvk872rbljl212w453yh7f8wjy00kp6idlzqk2x608xhln"; depends=[]; }; - GCSscore = derive2 { name="GCSscore"; version="1.6.0"; sha256="13wr36hjhrc4i28mbq51j13zbb6ax7r5hgqfjin79h2r805qfvb0"; depends=[affxparser Biobase BiocManager data_table devtools dplR RSQLite stringr]; }; - GDCRNATools = derive2 { name="GDCRNATools"; version="1.13.1"; sha256="1wvbdmddnq0w9z7ix4yna4sjzv547hiw2pihgf5k62gqnhdr60v9"; depends=[BiocParallel biomaRt clusterProfiler DESeq2 DOSE DT edgeR GenomicDataCommons ggplot2 gplots jsonlite limma org_Hs_eg_db pathview rjson shiny survival survminer XML]; }; - GDSArray = derive2 { name="GDSArray"; version="1.12.0"; sha256="1jvdlph4jd3gjxp6vr5klvcfahnvfb9kl1jd60m8rnx9395p5h5j"; depends=[BiocGenerics DelayedArray gdsfmt S4Vectors SeqArray SNPRelate]; }; - GEM = derive2 { name="GEM"; version="1.18.0"; sha256="1yw7h8frjz6dfv9xp9vxa153gfl3kqvcznjabxr9qjgaknfj50zk"; depends=[ggplot2]; }; - GENESIS = derive2 { name="GENESIS"; version="2.22.2"; sha256="1gbac3pbf9lh2c4316z4mzgv5rkmar7axh799gkr79g55rlcpysg"; depends=[Biobase BiocGenerics data_table foreach gdsfmt GenomicRanges GWASTools igraph IRanges Matrix reshape2 S4Vectors SeqArray SeqVarTools SNPRelate]; }; - GENIE3 = derive2 { name="GENIE3"; version="1.14.0"; sha256="1v54dzcz654wfm3npbp8gb55v49im0fm547cz3hvsidq4zhi3l1b"; depends=[dplyr reshape2]; }; - GEOfastq = derive2 { name="GEOfastq"; version="1.0.0"; sha256="0kvvx728y8cl6vsc8jljgbz2ssmp9qialb3bwvkmq6m5jp3jzik9"; depends=[doParallel foreach plyr RCurl rvest stringr xml2]; }; - GEOmetadb = derive2 { name="GEOmetadb"; version="1.54.0"; sha256="0jayfnlv5x8s9nkbs6mkwcmgfff11jk8sis16zz7pqfq6xpwdicg"; depends=[GEOquery RSQLite]; }; - GEOquery = derive2 { name="GEOquery"; version="2.60.0"; sha256="0jhkdbcd03d5n8vn3xkad6f21xjkawyxc9rdwcj8vwc8alx730am"; depends=[Biobase dplyr httr limma magrittr readr tidyr xml2]; }; - GEOsubmission = derive2 { name="GEOsubmission"; version="1.44.0"; sha256="1d3rv8gwgd4zp7k3x5k6fbsjc1q09h4lni81nmid9p180qyi56xg"; depends=[affy Biobase]; }; - GEWIST = derive2 { name="GEWIST"; version="1.36.0"; sha256="1hplhdz19vz0y5qq5ba435r4sd99m1krpfyrawalavary2pnl1c3"; depends=[car]; }; - GGPA = derive2 { name="GGPA"; version="1.4.0"; sha256="1m2k2d2csx0p8i3ag02m7mh7yfvlxzqqnxcp4739rbhxyd31li58"; depends=[GGally matrixStats network Rcpp RcppArmadillo scales sna]; }; - GIGSEA = derive2 { name="GIGSEA"; version="1.10.0"; sha256="099gmqn5j6sbcj6zzfnl096lri2vy0fkbs69xbx1rf0392mkh91q"; depends=[locfdr MASS Matrix]; }; - GISPA = derive2 { name="GISPA"; version="1.16.0"; sha256="11sajj0kmc1pj0r6nsy79s79zmlws1cdjfq0p8d62lwaqi278l13"; depends=[Biobase changepoint data_table genefilter GSEABase HH lattice latticeExtra plyr scatterplot3d]; }; - GLAD = derive2 { name="GLAD"; version="2.56.0"; sha256="0hfpfr9f6siq36wz5mzl6qnqq8cfy628vbl9k7kl18m9zq8v9vhx"; depends=[aws]; }; - GMRP = derive2 { name="GMRP"; version="1.20.0"; sha256="0cqpsczmwc2ggz70j8d1n8kn0m8n1in06pj0lgs4dbnm3hb8xhkr"; depends=[diagram GenomicRanges plotrix]; }; - GNET2 = derive2 { name="GNET2"; version="1.8.0"; sha256="1icv3665iki4ad2j1ab9n3pnw2r6c0v66xj4b8cdb8xliw8g93km"; depends=[DiagrammeR dplyr ggplot2 igraph matrixStats Rcpp reshape2 SummarizedExperiment xgboost]; }; - GOSemSim = derive2 { name="GOSemSim"; version="2.18.1"; sha256="00dbgkiv9x7g2i0anzcxpycwqqqry0y7jl3ad93lhvi31qnqq1sm"; depends=[AnnotationDbi GO_db Rcpp]; }; - GOSim = derive2 { name="GOSim"; version="1.30.0"; sha256="1qdkwnclga8xzbcc5qz2vma7zicfd9wgadjjprxfj7ak5s4dczsz"; depends=[annotate AnnotationDbi cluster corpcor flexmix GO_db graph Matrix org_Hs_eg_db RBGL Rcpp topGO]; }; - GOTHiC = derive2 { name="GOTHiC"; version="1.28.0"; sha256="1jl90842wsp0064rkhmgr40qhsq0kpj9nvdwc7jpddbg0z2zfrkj"; depends=[BiocGenerics BiocManager Biostrings BSgenome data_table GenomeInfoDb GenomicRanges ggplot2 IRanges Rsamtools rtracklayer S4Vectors ShortRead]; }; - GOexpress = derive2 { name="GOexpress"; version="1.26.0"; sha256="062d69g9yn3si6fg2y0j92zrxz0rz15lwvjwfyqgnxbygqm9vdry"; depends=[Biobase biomaRt ggplot2 gplots randomForest RColorBrewer RCurl stringr]; }; - GOfuncR = derive2 { name="GOfuncR"; version="1.12.0"; sha256="0lp2gmjlsk1yqxim5pi26i27iijw11lrcxmji7ynlag359yfnynd"; depends=[AnnotationDbi GenomicRanges gtools IRanges mapplots Rcpp vioplot]; }; - GOpro = derive2 { name="GOpro"; version="1.18.0"; sha256="1bj22bf2lkr5wvn3b3m6mncy12l4csfh918drf6sh4wn3flzxpqj"; depends=[AnnotationDbi BH dendextend doParallel foreach GO_db IRanges MultiAssayExperiment org_Hs_eg_db Rcpp S4Vectors]; }; - GOstats = derive2 { name="GOstats"; version="2.58.0"; sha256="0jjswy6qmfgr2f6vk3y9pdvs9x91gn31h55qllgh0qb2cb26g9wa"; depends=[annotate AnnotationDbi AnnotationForge Biobase Category GO_db graph RBGL Rgraphviz]; }; - GOsummaries = derive2 { name="GOsummaries"; version="2.28.0"; sha256="02y28jn7iv74njwk6vwfdax4h9ccy8ia630yh16rmid62icbglvd"; depends=[ggplot2 gProfileR gtable limma plyr Rcpp reshape2]; }; - GPA = derive2 { name="GPA"; version="1.4.0"; sha256="0ry9l3k78dmmkivxfdvbv29k8w96j72w1wy4rxq6f0lw14qmqmfx"; depends=[DT ggplot2 ggrepel plyr Rcpp shiny shinyBS vegan]; }; - GRENITS = derive2 { name="GRENITS"; version="1.44.0"; sha256="0d60nbnbhp4qx4rnxnlb2iinaysmfw271f5zn6zn9lw5wf2s40di"; depends=[ggplot2 Rcpp RcppArmadillo reshape2]; }; - GRmetrics = derive2 { name="GRmetrics"; version="1.18.0"; sha256="0nlfafhgjxm7nii0p84hsa8d3lc1jpammgyjsbs3rmbd4y7f0l64"; depends=[drc ggplot2 plotly S4Vectors SummarizedExperiment]; }; - GRridge = derive2 { name="GRridge"; version="1.16.0"; sha256="06ki206fjdppvd7426zpdck4gv9xjwfy8f74m81pfffg52kjr5gs"; depends=[glmnet graph Iso mvtnorm penalized survival]; }; - GSALightning = derive2 { name="GSALightning"; version="1.20.0"; sha256="0habixm6g226pf0y1y4f3djcrv8007xr291wjwvjxyv4blhdc1cm"; depends=[data_table Matrix]; }; - GSAR = derive2 { name="GSAR"; version="1.26.0"; sha256="14mvcv3mid3bjfjfh13ib60vvhkgifbhb8cylr9g1v131ljlys0y"; depends=[igraph]; }; - GSCA = derive2 { name="GSCA"; version="2.22.0"; sha256="15f6y4yh99qkc88pr8p8id3gmgcqagaag09w1n9hywn9x0a9h5gh"; depends=[ggplot2 gplots RColorBrewer reshape2 rhdf5 shiny sp]; }; - GSEABase = derive2 { name="GSEABase"; version="1.54.0"; sha256="0946kkykms79mqnx262q20xzrrhv7cv723xh378335ff41qyf63n"; depends=[annotate AnnotationDbi Biobase BiocGenerics graph XML]; }; - GSEABenchmarkeR = derive2 { name="GSEABenchmarkeR"; version="1.12.1"; sha256="06iqz9h36agyp8sngvxya8xjv6bd6g8dgcn5zlj4gcaf66sb68s1"; depends=[AnnotationDbi AnnotationHub Biobase BiocFileCache BiocParallel edgeR EnrichmentBrowser ExperimentHub KEGGandMetacoreDzPathwaysGEO KEGGdzPathwaysGEO S4Vectors SummarizedExperiment]; }; - GSEAlm = derive2 { name="GSEAlm"; version="1.52.0"; sha256="1jhdrk2p2mpfih5j3gzp1lncykdp6bjx1v3sspff7ahhlri29mxp"; depends=[Biobase]; }; - GSEAmining = derive2 { name="GSEAmining"; version="1.2.0"; sha256="14igvyym6j9biyk43af32b3x933hr4bzg4bc5w4hrkdypyzhbqqs"; depends=[dendextend dplyr ggplot2 ggwordcloud gridExtra rlang stringr tibble tidytext]; }; - GSRI = derive2 { name="GSRI"; version="2.40.0"; sha256="0acqf4x73l3i0vdgjkjra42h1sss1mjwg697iy4ndqgk04fcan81"; depends=[Biobase fdrtool genefilter GSEABase les]; }; - GSReg = derive2 { name="GSReg"; version="1.26.0"; sha256="1jlc2hp27rsy8d2z4pdcif0xd71gbljd2xzscmkzrw2s5bbnip9l"; depends=[AnnotationDbi GenomicFeatures Homo_sapiens org_Hs_eg_db]; }; - GSVA = derive2 { name="GSVA"; version="1.40.1"; sha256="0qf01vcj6nh1xhg1g29z73dnhhybl10bpfr3jiqk55na2q2i599h"; depends=[Biobase BiocParallel BiocSingular DelayedArray DelayedMatrixStats GSEABase HDF5Array IRanges Matrix S4Vectors SingleCellExperiment sparseMatrixStats SummarizedExperiment]; }; - GSgalgoR = derive2 { name="GSgalgoR"; version="1.2.1"; sha256="1z1lwx53clx1pqpvdzlbk837pyvsc0p3r0iha404nlrmj27r4vmc"; depends=[cluster doParallel foreach matchingR nsga2R proxy survival]; }; - GUIDEseq = derive2 { name="GUIDEseq"; version="1.22.0"; sha256="1qjfsghrvhy4s59lhwwjkqiy9q1gb1bkrnd0bh2pz5ndfcmqkp49"; depends=[BiocGenerics BiocParallel Biostrings BSgenome ChIPpeakAnno CRISPRseek data_table dplyr GenomeInfoDb GenomicAlignments GenomicRanges hash IRanges limma matrixStats Rsamtools S4Vectors]; }; - GWAS_BAYES = derive2 { name="GWAS.BAYES"; version="1.1.0"; sha256="1xsphhldr0b9hsqvxpsm2wja95im458rjzwljajx1ciwp94qagnm"; depends=[caret doParallel GA ggplot2 Matrix memoise Rcpp RcppEigen reshape2]; }; - GWASTools = derive2 { name="GWASTools"; version="1.38.0"; sha256="0as6rhl2g661kyf8qryjc1dvxi8vx9d70qfxpw63573vj05hfngp"; depends=[Biobase data_table DBI DNAcopy gdsfmt GWASExactHW lmtest logistf quantsmooth RSQLite sandwich survival]; }; - GWENA = derive2 { name="GWENA"; version="1.2.0"; sha256="1jslfkcpx7gbw2vnf9dp7mmj2jlq477ni77x944jm3z2dnzvps7r"; depends=[cluster dplyr dynamicTreeCut ggplot2 gprofiler2 igraph magrittr matrixStats NetRep purrr RColorBrewer rlist stringr SummarizedExperiment tibble tidyr WGCNA]; }; - GateFinder = derive2 { name="GateFinder"; version="1.12.0"; sha256="1xh9g4v7hrp6d6n1zp7qplr04hc7i7ym4jjd4kx4aag4vpil9ikf"; depends=[diptest flowCore flowFP mvoutlier splancs]; }; - GenVisR = derive2 { name="GenVisR"; version="1.24.0"; sha256="0pp64hd6fdpgglpv007m2jca57rfphn6qgfqa07g7055isa2yy8g"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings BSgenome data_table DBI FField GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra gtable gtools IRanges plyr reshape2 Rsamtools scales VariantAnnotation viridis]; }; - GeneAccord = derive2 { name="GeneAccord"; version="1.10.0"; sha256="1q0wpnp0bc9igvncm7vyg79l9ij1sf14k6kixnwankg963z2b52q"; depends=[biomaRt caTools dplyr ggplot2 ggpubr gtools magrittr maxLik RColorBrewer reshape2 tibble]; }; - GeneBreak = derive2 { name="GeneBreak"; version="1.22.0"; sha256="0kvpn87rlcwgqp6hdjiy4226rprlxzixax0jv3km7a4sfvf53l4y"; depends=[CGHbase CGHcall GenomicRanges QDNAseq]; }; - GeneExpressionSignature = derive2 { name="GeneExpressionSignature"; version="1.38.0"; sha256="1h5n64qv2psqg0fv00j8nr94hfm9sjjdlg78zbx5l41hx5jmqnj4"; depends=[Biobase]; }; - GeneGA = derive2 { name="GeneGA"; version="1.42.0"; sha256="1j1lb69jy67abk1v2mizsrxq2sbvmm137filb91s19a00nafn8cc"; depends=[hash seqinr]; }; - GeneGeneInteR = derive2 { name="GeneGeneInteR"; version="1.18.0"; sha256="1jfkbk1nlca6n3d2k5m0fwls4si1ic9rxj06ar019z9vyvhwj5z0"; depends=[data_table FactoMineR GenomicRanges igraph IRanges kernlab mvtnorm Rsamtools snpStats]; }; - GeneMeta = derive2 { name="GeneMeta"; version="1.64.0"; sha256="069w20ajyiq0q6qmb4rrs7vmzwlaq3wdd04nn31s700jdfcw6g66"; depends=[Biobase genefilter]; }; - GeneNetworkBuilder = derive2 { name="GeneNetworkBuilder"; version="1.34.0"; sha256="0q0742yk95xlp0bm18ng0h2q62wa7bxp7hc2nmqiyi2azny4npyy"; depends=[graph htmlwidgets plyr Rcpp Rgraphviz rjson XML]; }; - GeneOverlap = derive2 { name="GeneOverlap"; version="1.28.0"; sha256="1kfw3h68rvbafhklds6sfmviwv91nms8wk0ywzkjg5h3mmgxbsv9"; depends=[gplots RColorBrewer]; }; - GeneRegionScan = derive2 { name="GeneRegionScan"; version="1.48.0"; sha256="0hf9nvjqx3107h92yfh9ran7k93ljq1qzkhq8zphdsngky17nnfb"; depends=[affxparser Biobase Biostrings RColorBrewer S4Vectors]; }; - GeneSelectMMD = derive2 { name="GeneSelectMMD"; version="2.36.0"; sha256="1zkz7384sl1yldpm23j8r6k7jpv6iaqk8saii7alhfx08qzj9j5g"; depends=[Biobase limma MASS]; }; - GeneStructureTools = derive2 { name="GeneStructureTools"; version="1.12.0"; sha256="019ydjs1s1icgggrar0hqykkivvdm63ysjvf4g8mr8pdl69gfidy"; depends=[Biostrings BSgenome_Mmusculus_UCSC_mm10 data_table GenomicRanges Gviz IRanges plyr rtracklayer S4Vectors stringdist stringr]; }; - GeneTonic = derive2 { name="GeneTonic"; version="1.4.1"; sha256="0604i8wl3xcaj53mj70m46qnpc32kkb1sgxx5c6vq9np12mmycmj"; depends=[AnnotationDbi backbone bs4Dash circlize colorspace colourpicker ComplexHeatmap dendextend DESeq2 dplyr DT dynamicTreeCut expm ggforce ggplot2 ggrepel GO_db igraph matrixStats plotly RColorBrewer rintrojs rlang rmarkdown S4Vectors scales shiny shinycssloaders shinyWidgets SummarizedExperiment tidyr viridis visNetwork]; }; - GeneticsPed = derive2 { name="GeneticsPed"; version="1.54.0"; sha256="0225idv7dqk2jhcd23bad2s474szib83wfa6czw4g60i0jrm0vwp"; depends=[gdata genetics MASS]; }; - GenoGAM = derive2 { name="GenoGAM"; version="2.10.0"; sha256="0pf3mmf62na7g065rbwaq5lkcadzkdr862wl80gi5g17fpwc0vxx"; depends=[BiocParallel Biostrings data_table DelayedArray DESeq2 futile_logger GenomeInfoDb GenomicAlignments GenomicRanges HDF5Array IRanges Matrix Rcpp RcppArmadillo rhdf5 Rsamtools S4Vectors sparseinv SummarizedExperiment]; }; - GenomeInfoDb = derive2 { name="GenomeInfoDb"; version="1.28.4"; sha256="0fjpgvpvyvl8cqgh2annib6h0c5li3aqz1ajfh5z5k5d0avdm4w0"; depends=[BiocGenerics GenomeInfoDbData IRanges RCurl S4Vectors]; }; - GenomicAlignments = derive2 { name="GenomicAlignments"; version="1.28.0"; sha256="00rq110jkh89nxgk05zh8kssxk8mb4dq0wjg3n7ivfmmm9wdwhp2"; depends=[BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; }; - GenomicDataCommons = derive2 { name="GenomicDataCommons"; version="1.16.0"; sha256="1m7lvvki2azp8c7faybkx0rnpwwmvqkmbjbsqpmriz3484cxgs97"; depends=[dplyr GenomicRanges httr IRanges jsonlite magrittr rappdirs readr rlang S4Vectors SummarizedExperiment tibble xml2]; }; - GenomicDistributions = derive2 { name="GenomicDistributions"; version="1.0.0"; sha256="0fz124inqjlqm8wrjm82183mdw8bxvlg3mcpn646bz1q0m7bs9zx"; depends=[Biostrings data_table GenomicRanges ggplot2 IRanges reshape2]; }; - GenomicFeatures = derive2 { name="GenomicFeatures"; version="1.44.2"; sha256="091p8xnf2xkqhind81vyv1rmy2fz2b3qalcbrsw4qnp24vgdv2am"; depends=[AnnotationDbi Biobase BiocGenerics BiocIO biomaRt Biostrings DBI GenomeInfoDb GenomicRanges IRanges RCurl RSQLite rtracklayer S4Vectors XVector]; }; - GenomicFiles = derive2 { name="GenomicFiles"; version="1.28.0"; sha256="1plh14m7w6calw5yxcxp7g4bg8q00ax85m517wap78bni975k13y"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges IRanges MatrixGenerics Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; - GenomicInteractions = derive2 { name="GenomicInteractions"; version="1.26.0"; sha256="0zjl7rp5fk14kqsx0bkbpq6hqahbkiyvwa9aggp4kfb8hnmz9qal"; depends=[Biobase BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gridExtra Gviz igraph InteractionSet IRanges Rsamtools rtracklayer S4Vectors stringr]; }; - GenomicOZone = derive2 { name="GenomicOZone"; version="1.6.0"; sha256="09cmgxszlabjs94wil46b4gp5bbfiba4b3a2j7x83hyl0d4rz4dc"; depends=[biomaRt Ckmeans_1d_dp GenomeInfoDb GenomicRanges ggbio ggplot2 gridExtra IRanges lsr plyr Rdpack S4Vectors]; }; - GenomicRanges = derive2 { name="GenomicRanges"; version="1.44.0"; sha256="1qxc6dcwdlkan3hg0j9yfhz7gyi9qg671yj6zizsk6mzl7qqva0x"; depends=[BiocGenerics GenomeInfoDb IRanges S4Vectors XVector]; }; - GenomicScores = derive2 { name="GenomicScores"; version="2.4.0"; sha256="1b8982fj0r7igj749wljsdfn3c985w8n3d5gbhr5rw73llfb8x6w"; depends=[AnnotationHub Biobase BiocFileCache BiocGenerics BiocManager Biostrings DelayedArray GenomeInfoDb GenomicRanges HDF5Array IRanges rhdf5 S4Vectors XML]; }; - GenomicSuperSignature = derive2 { name="GenomicSuperSignature"; version="1.0.1"; sha256="1lwr8jjxkm5hix1ky31024vjx4b8j46kq2cn3khsb8ccraac8ngp"; depends=[Biobase BiocFileCache ComplexHeatmap dplyr flextable ggplot2 ggpubr plotly S4Vectors SummarizedExperiment]; }; - GenomicTuples = derive2 { name="GenomicTuples"; version="1.26.0"; sha256="1ngvskrcxhcpj2fnjxnjr2v37fr9ldj7jaflwql76y0fwnr8ak9g"; depends=[BiocGenerics data_table GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; - GeomxTools = derive2 { name="GeomxTools"; version="1.0.0"; sha256="1y0n9yswfw219q2vc11mn6zj1gs2x0inr9biwda8w4dqjmakyxs2"; depends=[Biobase BiocGenerics EnvStats NanoStringNCTools readxl reshape2 rjson S4Vectors]; }; - GladiaTOX = derive2 { name="GladiaTOX"; version="1.8.0"; sha256="0aya7xj45axnlzxxhjn0p209q8nzly87pvhawb2lw7iqh8faszyv"; depends=[brew data_table DBI ggplot2 ggrepel numDeriv RColorBrewer RCurl RJSONIO RMySQL RSQLite stringr tidyr XML xtable]; }; - Glimma = derive2 { name="Glimma"; version="2.2.0"; sha256="0dsk8qmwimzmd1x4k4jwg9q11jm1ahn8cw0gzd6s2gmigfls4hsa"; depends=[DESeq2 edgeR htmlwidgets jsonlite limma S4Vectors SummarizedExperiment]; }; - GlobalAncova = derive2 { name="GlobalAncova"; version="4.10.0"; sha256="1g6yafxlky8x6piba767j3pk8zqgf1z5svzdiskng3a56rzil3rj"; depends=[annotate AnnotationDbi Biobase corpcor dendextend globaltest GSEABase VGAM]; }; - GmicR = derive2 { name="GmicR"; version="1.6.0"; sha256="02nwk4drjwnbfzznzxxqbb0ss91skx3dbppl3r7br67yr6k5jf5y"; depends=[AnnotationDbi ape bnlearn Category data_table doParallel DT foreach GOstats gRain gRbase GSEABase org_Hs_eg_db org_Mm_eg_db reshape2 shiny WGCNA]; }; - GraphAT = derive2 { name="GraphAT"; version="1.64.0"; sha256="08yc9fr9wkhzcn99fqjijy98xrk2d19z7v221331fz7vik06086k"; depends=[graph MCMCpack]; }; - GraphAlignment = derive2 { name="GraphAlignment"; version="1.56.0"; sha256="0ba3vk5izkxqwigidwhfnsk1xpg5pcsa9pla51yjzknicn2sbf5c"; depends=[]; }; - GraphPAC = derive2 { name="GraphPAC"; version="1.34.0"; sha256="0y2cp552l648dz0gniw5zjdw4i2nr526d9s0rdahrdkls51v6g1m"; depends=[igraph iPAC RMallow TSP]; }; - GreyListChIP = derive2 { name="GreyListChIP"; version="1.24.0"; sha256="1g9ja8p90czx83ar0l9ran7m6aggvszdbqm714fq7z4rxq9b4hs3"; depends=[BSgenome GenomeInfoDb GenomicAlignments GenomicRanges MASS Rsamtools rtracklayer SummarizedExperiment]; }; - Guitar = derive2 { name="Guitar"; version="2.8.0"; sha256="1q4m6c5181dw12lvdp324jlk78c9jgcsg6b9hk87zjadp6j0gfr6"; depends=[AnnotationDbi dplyr GenomicFeatures GenomicRanges ggplot2 knitr magrittr rtracklayer]; }; - Gviz = derive2 { name="Gviz"; version="1.36.2"; sha256="0lp0k8jd4dfsfn10706124graaqnzcyv1siblvm8dn2ykw2rc6vl"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings biovizBase BSgenome digest ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges lattice latticeExtra matrixStats RColorBrewer Rsamtools rtracklayer S4Vectors XVector]; }; - HDF5Array = derive2 { name="HDF5Array"; version="1.20.0"; sha256="1718hplz5qlbwxwb87509bl7lir9kilvn1s7p2haz551pg48zvrc"; depends=[BiocGenerics DelayedArray IRanges Matrix rhdf5 rhdf5filters Rhdf5lib S4Vectors]; }; - HDTD = derive2 { name="HDTD"; version="1.26.0"; sha256="1kyh0r3y46asf8aad9dc190ggmi0iv018x2r7nr35qsm0b95h60z"; depends=[Rcpp RcppArmadillo]; }; - HELP = derive2 { name="HELP"; version="1.50.0"; sha256="1clk8qg1wj9drji2byqc2dbh4xskf3mz86bibq8lkncjanivzvpk"; depends=[Biobase]; }; - HEM = derive2 { name="HEM"; version="1.64.0"; sha256="12i3m68knr3jrry0m808msgijvxn3kkrmjwrddcbx331d16lmgq5"; depends=[Biobase]; }; - HGC = derive2 { name="HGC"; version="1.0.3"; sha256="1dpkxc9pbjawwcnrgmbfxf7la5jd69aba5rf1xif8ka1sgm6h1fy"; depends=[ape dendextend dplyr ggplot2 Matrix mclust patchwork RANN Rcpp RcppEigen]; }; - HIBAG = derive2 { name="HIBAG"; version="1.28.0"; sha256="0bfpvz13zzhl58c5cs1c28vsqy491l5ssgvpdpgj954l477115rk"; depends=[RcppParallel]; }; - HIPPO = derive2 { name="HIPPO"; version="1.4.0"; sha256="1q83a3iq37h1nxa1r5ng7d1jaxvbcmwq1pl1yxg3bv8cjcv9l0di"; depends=[dplyr ggplot2 ggrepel gridExtra irlba magrittr Matrix reshape2 rlang Rtsne SingleCellExperiment umap]; }; - HIREewas = derive2 { name="HIREewas"; version="1.10.0"; sha256="0bqwxghmi051ijmg1w97955bk8hlgshg39amdrgpsaalswvp8bi5"; depends=[gplots quadprog]; }; - HMMcopy = derive2 { name="HMMcopy"; version="1.34.0"; sha256="1pjlcv93gcmg378020aia6j36h9m9a2iw7sv8hxf6sl22qzccxq2"; depends=[data_table]; }; - HPAStainR = derive2 { name="HPAStainR"; version="1.2.1"; sha256="1bmk6xpa7j4sk02zrhvhyx7h5jifzgjpq8jfydaz45dkrnxpcizv"; depends=[data_table dplyr scales shiny stringr tibble tidyr]; }; - HPAanalyze = derive2 { name="HPAanalyze"; version="1.10.0"; sha256="14sv35caghdgg48s2n8fn63lpnpyb76aqgkcq201n89c9k1kscm2"; depends=[dplyr ggplot2 gridExtra openxlsx tibble xml2]; }; - HTSFilter = derive2 { name="HTSFilter"; version="1.32.0"; sha256="1vvxiifqh28kv7anbi97mbivzj4f0f8nw79si09qrw4v1vwadv62"; depends=[Biobase BiocParallel DESeq2 edgeR]; }; - HTSeqGenie = derive2 { name="HTSeqGenie"; version="4.22.0"; sha256="1f1lkd6pddfvy88mvkaym1szjixrlcyah7pwjaclh149n53cyl5c"; depends=[BiocGenerics BiocParallel Biostrings Cairo chipseq GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gmapR hwriter IRanges Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment VariantAnnotation VariantTools]; }; - HTqPCR = derive2 { name="HTqPCR"; version="1.46.0"; sha256="1y3ik5a9w66jby6682jfm8mn2883s8yfv4xw8a8v1f6q2d1j938l"; depends=[affy Biobase gplots limma RColorBrewer]; }; - Harman = derive2 { name="Harman"; version="1.20.0"; sha256="08kjvi0lc9j5fcd0wq144kn2chlgl4fgfvrzhjz3k032qsssnkck"; depends=[Rcpp]; }; - Harshlight = derive2 { name="Harshlight"; version="1.64.0"; sha256="08qjfpxb01qkfqvfybndnsqpz7lad31p0sfb6bawlymd6w7n7iz9"; depends=[affy altcdfenvs Biobase]; }; - Heatplus = derive2 { name="Heatplus"; version="3.0.0"; sha256="0xwg3sxmihg3p6v3nxgrqy0nrqxi6razg3b3rjh2gcb2vv8gcqng"; depends=[RColorBrewer]; }; - HelloRanges = derive2 { name="HelloRanges"; version="1.18.0"; sha256="018mc1l0qrsn1zhlffcj4nviycs9armqqbllw5aqdqc27l8qqqw0"; depends=[BiocGenerics Biostrings BSgenome docopt GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; - Herper = derive2 { name="Herper"; version="1.2.0"; sha256="0s8v80wpz8dvj7nrnks4dmajrz9i52vszcscv57ljjwyr0didd4n"; depends=[reticulate rjson withr]; }; - HiCBricks = derive2 { name="HiCBricks"; version="1.10.0"; sha256="0ywqdrnklj6b7vs4r5zw1hw68ss9bhdnqn5y68l4pjzx43a4v963"; depends=[BiocParallel curl data_table digest GenomeInfoDb GenomicRanges ggplot2 IRanges jsonlite R_utils R6 RColorBrewer readr reshape2 rhdf5 S4Vectors scales stringr tibble viridis]; }; - HiCDCPlus = derive2 { name="HiCDCPlus"; version="1.0.0"; sha256="1abkg1gwl6qq5m3hmvjca1967d4b6yfxzypn7afkjkpmghjyxhcl"; depends=[bbmle Biostrings BSgenome data_table dplyr GenomeInfoDb GenomicInteractions GenomicRanges InteractionSet IRanges MASS pscl R_utils Rcpp rlang rtracklayer S4Vectors tibble tidyr]; }; - HiCcompare = derive2 { name="HiCcompare"; version="1.14.0"; sha256="0c7chw35k3n4rns00zlh6ijlir0ydcn04hxhvigdd1v1d7j7rxwp"; depends=[BiocParallel data_table dplyr GenomicRanges ggplot2 gridExtra gtools InteractionSet IRanges KernSmooth mgcv pheatmap QDNAseq rhdf5 S4Vectors]; }; - HiLDA = derive2 { name="HiLDA"; version="1.6.0"; sha256="0kdnnr3dk0aspn3yzl509vh1jcg03lf58i8n1cdlxgzn6hsg23z4"; depends=[abind BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg19 cowplot forcats GenomicFeatures GenomicRanges ggplot2 R2jags Rcpp S4Vectors stringr tidyr TxDb_Hsapiens_UCSC_hg19_knownGene XVector]; }; - HiTC = derive2 { name="HiTC"; version="1.36.0"; sha256="0s3kfqs3zlmq61hxdmxpmi9gfs9w3byckw7xzp1hrhdbsl46yvgq"; depends=[Biostrings GenomeInfoDb GenomicRanges IRanges Matrix RColorBrewer rtracklayer]; }; - HilbertCurve = derive2 { name="HilbertCurve"; version="1.22.0"; sha256="05brlfvyb47kjk9vah9a7p3348v0m7mnbcx5fjh3jp47mci46r5g"; depends=[circlize GenomicRanges HilbertVis IRanges png polylabelr]; }; - HilbertVis = derive2 { name="HilbertVis"; version="1.50.0"; sha256="1fiycg4zkkgb5jynxv6jglc9x3skr9s4xf9aisywgkv2rv4hhk13"; depends=[lattice]; }; - HilbertVisGUI = derive2 { name="HilbertVisGUI"; version="1.50.0"; sha256="1685p65kf827ynbcxfb6dsp5bn7xjgwvrcp8q958jir84ma1glzf"; depends=[HilbertVis]; }; - HubPub = derive2 { name="HubPub"; version="1.0.0"; sha256="00hrhhdahp5dccxad1i7q1wgn4fbdrw01jpa2vdx13f2dqzhwvls"; depends=[available aws_s3 BiocManager biocthis dplyr fs usethis]; }; - HumanTranscriptomeCompendium = derive2 { name="HumanTranscriptomeCompendium"; version="1.8.3"; sha256="1bbdqiw8bmnac9r1jk1jamj4ilakn1rnqy9n77p4565yaa9ij9dp"; depends=[S4Vectors shiny ssrch SummarizedExperiment]; }; - HybridMTest = derive2 { name="HybridMTest"; version="1.36.0"; sha256="1xfri7da9wp38292b29l9rw6rabafv119baj7a4q238vfp6jjp9h"; depends=[Biobase fdrtool MASS survival]; }; - IHW = derive2 { name="IHW"; version="1.20.0"; sha256="0b393a8ayzbnrgkk562w1dj7avacpb3wc7yq7awiki24wi5g2lfw"; depends=[BiocGenerics fdrtool lpsymphony slam]; }; - ILoReg = derive2 { name="ILoReg"; version="1.2.0"; sha256="1fxfv7p3bjaam49pria2p9ggq0qnmzx2kjlsp2z53anvnp8dw9zb"; depends=[aricode cluster cowplot dendextend DescTools doRNG doSNOW dplyr fastcluster foreach ggplot2 LiblineaR Matrix parallelDist pheatmap plyr reshape2 RSpectra Rtsne S4Vectors scales SingleCellExperiment SparseM SummarizedExperiment umap]; }; - IMAS = derive2 { name="IMAS"; version="1.16.0"; sha256="1mlmafjav922v0my4igk125i8vi7crjgxy6495m2fqyzx549lq30"; depends=[AnnotationDbi BiocGenerics BiocParallel doParallel foreach GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggfortify ggplot2 gridExtra IRanges IVAS lattice lme4 Matrix Rsamtools S4Vectors survival]; }; - IMMAN = derive2 { name="IMMAN"; version="1.12.0"; sha256="1p71cjdvhwik28xz58zyk41690l5szr65hpb64301r0zm7kj8fad"; depends=[Biostrings igraph seqinr STRINGdb]; }; - IMPCdata = derive2 { name="IMPCdata"; version="1.28.0"; sha256="12ayi1dyxhhls3dm7arypv8l1ab7sh8bmpc2y0dw6fnmax6fyn4a"; depends=[rjson]; }; - INDEED = derive2 { name="INDEED"; version="2.6.0"; sha256="12xymfyll6k3xc4whjxm7v3gb9kgy06pivid2h3rfhsccj9kx504"; depends=[devtools glasso igraph visNetwork]; }; - INPower = derive2 { name="INPower"; version="1.28.0"; sha256="0mwslnp1h9700whalbq5r878kyx2cfwjpv23nhbac0sry4afvz6z"; depends=[mvtnorm]; }; - INSPEcT = derive2 { name="INSPEcT"; version="1.22.0"; sha256="0jh5db9dv5pb6b50sg22x8q55m3h0h0nkmb9mivvvp22dhyrd82z"; depends=[Biobase BiocGenerics BiocParallel DESeq2 deSolve gdata GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges KernSmooth plgem pROC rootSolve Rsamtools rtracklayer S4Vectors shiny SummarizedExperiment TxDb_Mmusculus_UCSC_mm9_knownGene]; }; - IONiseR = derive2 { name="IONiseR"; version="2.16.0"; sha256="0fknlwdfd49v09zspg0337b0zzc8hqza3563yrw51viw3g35d6q3"; depends=[BiocGenerics BiocParallel Biostrings bit64 dplyr ggplot2 magrittr rhdf5 ShortRead stringr tibble tidyr XVector]; }; - IPO = derive2 { name="IPO"; version="1.18.0"; sha256="1c3kf51n6p9331r85pm8al0x7ykwvbm9bcmknj2fpgb159dsdasd"; depends=[BiocParallel CAMERA rsm xcms]; }; - IRISFGM = derive2 { name="IRISFGM"; version="1.0.0"; sha256="0mjj9a13b6n2pldicdk53hqm4rqrd4nm8r2iv6wm37y1kwp66sqr"; depends=[AdaptGauss AnnotationDbi anocva clusterProfiler colorspace DEsingle DrImpute ggplot2 ggpubr ggraph igraph knitr Matrix MCL mixtools org_Hs_eg_db org_Mm_eg_db pheatmap Polychrome RColorBrewer Rcpp scater scran Seurat SingleCellExperiment]; }; - IRanges = derive2 { name="IRanges"; version="2.26.0"; sha256="0dzj8wqbjzilh2dsaj3ylx958xqrv0c688ayfq2r1z7rs75qy7kx"; depends=[BiocGenerics S4Vectors]; }; - ISAnalytics = derive2 { name="ISAnalytics"; version="1.2.1"; sha256="042m7iwqzg5hfbl5gmwiyhpjv6a6bfb0fxkidzpxsrghr7vdxar7"; depends=[BiocParallel data_table dplyr fs ggplot2 ggrepel htmltools lifecycle lubridate magrittr plotly psych purrr Rcapture reactable readr readxl rlang stringr tibble tidyr upsetjs zip]; }; - ISoLDE = derive2 { name="ISoLDE"; version="1.20.0"; sha256="06r51d6f5vrzn9nfwssj3wca8sccr76jf8hwf8h3yc89pw2cvag8"; depends=[]; }; - ITALICS = derive2 { name="ITALICS"; version="2.52.0"; sha256="0c4bli316kamlvwklj67ysp82xkiiilym7b6cbmk1x8vv9fgwslm"; depends=[affxparser DBI GLAD ITALICSData oligo oligoClasses pd_mapping50k_xba240]; }; - IVAS = derive2 { name="IVAS"; version="2.12.0"; sha256="0ya17p7lzffamhg7q4manqk64pnn32fcas7fsbpx9cch3vzhf29k"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges ggfortify ggplot2 IRanges lme4 Matrix S4Vectors]; }; - IWTomics = derive2 { name="IWTomics"; version="1.16.0"; sha256="146cm1lbfkgagys1mkir4dq4ymcsn0xyi44171g31by1vjnbjvq0"; depends=[fda GenomicRanges gtable IRanges KernSmooth S4Vectors]; }; - Icens = derive2 { name="Icens"; version="1.64.0"; sha256="1rzgwxx4w2bqsaz0xmkhi4w9zsxgms80xf59zg1xp1camyhaihlz"; depends=[survival]; }; - IdeoViz = derive2 { name="IdeoViz"; version="1.28.0"; sha256="17sx0v5lq2zmg098ps4ksj1h0yla3vlh6s2w1ahqsq0nvm193scm"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges RColorBrewer rtracklayer]; }; - IgGeneUsage = derive2 { name="IgGeneUsage"; version="1.6.0"; sha256="0ix535avl0mi0fak7q989gba8wpai70skxri8xrc0rpsl5wwm8cl"; depends=[Rcpp reshape2 rstan StanHeaders SummarizedExperiment]; }; - ImmuneSpaceR = derive2 { name="ImmuneSpaceR"; version="1.20.0"; sha256="1wjayzcz71wrzrxjqn44da03lcaxic4gj8bzgic0247c6h7a4m8b"; depends=[Biobase curl data_table digest flowCore flowWorkspace ggplot2 gplots heatmaply httr jsonlite pheatmap plotly preprocessCore R6 Rlabkey rmarkdown scales]; }; - InPAS = derive2 { name="InPAS"; version="2.0.0"; sha256="1qx900vm0qagbn647xcjns613hngxzpy49wkd0w9h4c7aqz0yyw4"; depends=[AnnotationDbi Biobase BiocParallel Biostrings BSgenome cleanUpdTSeq DBI depmixS4 dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges limma magrittr plyranges preprocessCore purrr readr reshape2 RSQLite S4Vectors]; }; - InTAD = derive2 { name="InTAD"; version="1.12.0"; sha256="1s53fs7cvczf5x4cy9ak7wmbg9jp6r3lb3a51dm4y94brx18n1wf"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 ggpubr IRanges mclust MultiAssayExperiment qvalue rtracklayer S4Vectors SummarizedExperiment]; }; - Informeasure = derive2 { name="Informeasure"; version="1.2.0"; sha256="0igkvp2djr858b4i0qs9zlj4a425066pb5zb9mv4x05biky8jd1k"; depends=[entropy]; }; - IntEREst = derive2 { name="IntEREst"; version="1.16.0"; sha256="1yslvjxz5sqh46k57lrv3226g74rhdy7xxhis4frr13i7i8h020a"; depends=[BiocGenerics BiocParallel Biostrings DBI DESeq2 DEXSeq edgeR GenomicAlignments GenomicFeatures GenomicRanges IRanges RMySQL Rsamtools S4Vectors seqinr seqLogo SummarizedExperiment]; }; - InterCellar = derive2 { name="InterCellar"; version="1.0.0"; sha256="0kjadprm92s60nsky7bxbp0dfqrm9s169kab4cf8h60xcf9rm4gs"; depends=[biomaRt circlize colorspace colourpicker ComplexHeatmap config data_table dendextend dplyr DT factoextra fmsb fs ggplot2 golem htmltools htmlwidgets plotly plyr readxl rlang scales shiny shinyalert shinycssloaders shinydashboard shinyFeedback shinyFiles signal tibble tidyr umap visNetwork wordcloud2]; }; - InterMineR = derive2 { name="InterMineR"; version="1.14.1"; sha256="1p7dvn2s2xq39zxxbmqma0i2ha0nj9bl65awp2h5b0yrqx12ia0v"; depends=[Biostrings GenomicRanges httr igraph IRanges RCurl RJSONIO S4Vectors sqldf SummarizedExperiment XML xml2]; }; - InteractionSet = derive2 { name="InteractionSet"; version="1.20.0"; sha256="034xidjmn67n1471fnpdmz7gjm6p05cj8sp9nssc3gxdzn54a6xb"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges Matrix Rcpp S4Vectors SummarizedExperiment]; }; - InteractiveComplexHeatmap = derive2 { name="InteractiveComplexHeatmap"; version="1.0.0"; sha256="0i6n49vac0pzimx82hk4ssfc21hml68j5is3czl4m40sn541s4gv"; depends=[clisymbols ComplexHeatmap digest GetoptLong htmltools IRanges jsonlite kableExtra RColorBrewer S4Vectors shiny svglite]; }; - IntramiRExploreR = derive2 { name="IntramiRExploreR"; version="1.14.1"; sha256="16f1q9gbb1zd71ygmwikh9ns9392x8mf1srf0zkfn0ikcr7i6vb6"; depends=[FGNet igraph knitr]; }; - IsoCorrectoR = derive2 { name="IsoCorrectoR"; version="1.10.0"; sha256="05vqn4y2qrvgap8fl7cqc5qmg4aqc09bn0n6n527h1zsjkvam7w8"; depends=[dplyr magrittr pracma quadprog readr readxl stringr tibble WriteXLS]; }; - IsoCorrectoRGUI = derive2 { name="IsoCorrectoRGUI"; version="1.8.0"; sha256="1xqqfvbwnfg45ajkk55138px3plsdjgmzdd6rnj5lq7pbykxlf1m"; depends=[IsoCorrectoR readxl tcltk2]; }; - IsoGeneGUI = derive2 { name="IsoGeneGUI"; version="2.28.0"; sha256="0vnlja5r982m38vayy4njgybpy6da17vvi959qvwlrfglkk29l77"; depends=[Biobase ff geneplotter goric Iso IsoGene jpeg multtest ORCME ORIClust orQA RColorBrewer Rcpp relimp tkrplot xlsx]; }; - IsoformSwitchAnalyzeR = derive2 { name="IsoformSwitchAnalyzeR"; version="1.14.1"; sha256="0zfwhaz5p0ivyjd06nm16vfwywnzani5plh8jyj3fp6h9qjsgzd4"; depends=[Biobase BiocGenerics Biostrings BSgenome DBI DEXSeq dplyr DRIMSeq edgeR futile_logger GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges limma magrittr plyr RColorBrewer RCurl readr reshape2 rtracklayer stringr tibble tximeta tximport VennDiagram XVector]; }; - KBoost = derive2 { name="KBoost"; version="1.0.0"; sha256="15x0n45v5qjb4qgp4hdw0cvwc49fwgpn4j41qhixn6c3dbyn0588"; depends=[]; }; - KCsmart = derive2 { name="KCsmart"; version="2.50.0"; sha256="0fz7pn7z9yyvi9k5va4imjr2bk62jf6gvyymm0jcmw1dlca3g6i7"; depends=[BiocGenerics KernSmooth multtest siggenes]; }; - KEGGREST = derive2 { name="KEGGREST"; version="1.32.0"; sha256="15313d20v3ziyn52fhc6fbzcy1kxjkdx18124bxhdfd14f4aypcd"; depends=[Biostrings httr png]; }; - KEGGgraph = derive2 { name="KEGGgraph"; version="1.52.0"; sha256="0zxdph5hzr3kzj2g1mjqpiviwa189a5sq4bw7wiry6r79fdnklqs"; depends=[graph RCurl Rgraphviz XML]; }; - KEGGlincs = derive2 { name="KEGGlincs"; version="1.18.0"; sha256="1k1b1d0nzp3psk1qx5mcz6l8had1ymfdnm1xn0rmwzgny5mzcma0"; depends=[AnnotationDbi gtools hgu133a_db httr igraph KEGGgraph KEGGREST KOdata org_Hs_eg_db plyr RJSONIO XML]; }; - KinSwingR = derive2 { name="KinSwingR"; version="1.10.0"; sha256="0zj16im3j2kvgi84mgpk0x8kqp8l831zkqcvjn27y73dvniiycby"; depends=[BiocParallel data_table sqldf]; }; - KnowSeq = derive2 { name="KnowSeq"; version="1.6.3"; sha256="1wsbs97n27iwhxh0fjxsfqz25p6rn2rh6r4cibnmvm18vkm54hvp"; depends=[caret cqn e1071 edgeR ggplot2 gridExtra Hmisc httr jsonlite kernlab limma praznik R_utils randomForest reshape2 rlist rmarkdown stringr sva XML]; }; - LACE = derive2 { name="LACE"; version="1.4.0"; sha256="1v4nsm4bx6kmsx6ivwn18zki4h9yri4mpigaqpwi1flfbfgm9wa5"; depends=[data_tree igraph RColorBrewer Rfast SummarizedExperiment]; }; - LBE = derive2 { name="LBE"; version="1.60.0"; sha256="0fd8qihzy7v7zzn1kky3ja7k3n4mav3myi2bkdrlw7nhrxsx1hys"; depends=[]; }; - LEA = derive2 { name="LEA"; version="3.4.0"; sha256="10pbaq5lmc1w1jpplvxxmpqjmf6c0k9hxd8l8c209ldwsxnhjn6a"; depends=[]; }; - LOBSTAHS = derive2 { name="LOBSTAHS"; version="1.18.1"; sha256="1vbai8gz3rdhfr7x28lc6xyiqh0zj95kdmbpsr2blgm0analnx46"; depends=[CAMERA xcms]; }; - LOLA = derive2 { name="LOLA"; version="1.22.0"; sha256="0a7ywik5dxb12xivllwjr3mp9q0r8692qarv6inzbpigby5cgnyi"; depends=[BiocGenerics data_table GenomicRanges IRanges reshape2 S4Vectors]; }; - LPE = derive2 { name="LPE"; version="1.66.0"; sha256="1nakn89bdmrlbh97finab4b5myyq25j8vnysp7x325kw10arrfrw"; depends=[]; }; - LPEadj = derive2 { name="LPEadj"; version="1.52.0"; sha256="1zn3fl0fs4nfbcyhrb8f3gfgidha36ryrlsblpm3bg36f21v59zs"; depends=[LPE]; }; - LRBaseDbi = derive2 { name="LRBaseDbi"; version="2.2.0"; sha256="0h1hnbw0dvd4scya4x29nrpwjx9yzhbkvv9il5d4xmhpr22ccm08"; depends=[AnnotationDbi Biobase DBI RSQLite]; }; - LRcell = derive2 { name="LRcell"; version="1.0.0"; sha256="0aaqmdn0jlwdm240v3i0cjqj1xgh0r491162bdczxy843czrlq26"; depends=[AnnotationHub BiocParallel dplyr ExperimentHub ggplot2 ggrepel magrittr]; }; - LedPred = derive2 { name="LedPred"; version="1.26.0"; sha256="0bqkjs53v75x8qn9h8cxrj4dpkng71p1mr4lzhaihx7fww035q0i"; depends=[akima e1071 ggplot2 irr jsonlite plot3D plyr RCurl ROCR testthat]; }; - LineagePulse = derive2 { name="LineagePulse"; version="1.12.0"; sha256="0k0saiq2m5fzg9d9av6nphn6gpzl33m5idy3vskf2zdbhmkw31yc"; depends=[BiocParallel circlize ComplexHeatmap ggplot2 gplots knitr Matrix RColorBrewer SingleCellExperiment SummarizedExperiment]; }; - LinkHD = derive2 { name="LinkHD"; version="1.6.0"; sha256="100q61dxpwy0qaifld4vmyz92x25fjfynn369qnjw189ba1kgvff"; depends=[cluster data_table emmeans ggplot2 ggpubr gridExtra MultiAssayExperiment reshape2 rio scales vegan]; }; - Linnorm = derive2 { name="Linnorm"; version="2.16.0"; sha256="035hrniycqadmkwg8rmzw8szv0amhy31390izy91rfrld31v2yy7"; depends=[amap apcluster ellipse fastcluster fpc ggdendro ggplot2 gmodels igraph limma MASS mclust Rcpp RcppArmadillo Rtsne statmod vegan zoo]; }; - LiquidAssociation = derive2 { name="LiquidAssociation"; version="1.46.0"; sha256="1daaz18ab3qdfv8q9121jqiivvfljknrm3gmm7ky8pr5yph0irqj"; depends=[Biobase geepack org_Sc_sgd_db yeastCC]; }; - LoomExperiment = derive2 { name="LoomExperiment"; version="1.10.1"; sha256="1wlc13z93xrj86gfh3c8pbx3jja08pqnwk6zafflr2vhfj1b3ckl"; depends=[BiocIO DelayedArray GenomicRanges HDF5Array Matrix rhdf5 S4Vectors SingleCellExperiment stringr SummarizedExperiment]; }; - LowMACA = derive2 { name="LowMACA"; version="1.22.0"; sha256="19x29p290yxy8lcjdb951p5cnxwzmk4q5jfpdlpjshln7g806d88"; depends=[BiocParallel Biostrings cgdsr data_table gridBase httr LowMACAAnnotation motifStack RColorBrewer reshape2 stringr]; }; - LymphoSeq = derive2 { name="LymphoSeq"; version="1.20.0"; sha256="0s88rrhq5lpajllqz1swxlwc9srzyv0paz20xv400jdlwfz69vn4"; depends=[Biostrings circlize data_table dplyr ggplot2 ggtree ineq LymphoSeqDB msa phangorn plyr RColorBrewer reshape stringdist UpSetR VennDiagram]; }; - M3C = derive2 { name="M3C"; version="1.14.0"; sha256="17gj4haa4ywc6bmppm342jzppl3inqa94235yspikij6c098vrmc"; depends=[cluster corpcor doParallel doSNOW foreach ggplot2 Matrix matrixcalc Rtsne umap]; }; - M3Drop = derive2 { name="M3Drop"; version="1.18.0"; sha256="04yq38xdpwl0v206ivqj6szyznwdpm39chnmhqrwbal9aa7861v4"; depends=[bbmle gplots Hmisc irlba Matrix matrixStats numDeriv RColorBrewer reldist statmod]; }; - MACPET = derive2 { name="MACPET"; version="1.12.0"; sha256="0rz5813fg2l1q4pp07qj108rfq7csnjq623cz62rpnb7v3813dx0"; depends=[BH bigmemory BiocParallel Biostrings futile_logger GenomeInfoDb GenomicAlignments GenomicRanges GEOquery gtools InteractionSet intervals IRanges knitr plyr Rbowtie Rcpp Rsamtools rtracklayer S4Vectors ShortRead]; }; - MACSQuantifyR = derive2 { name="MACSQuantifyR"; version="1.6.0"; sha256="0qrbxm3ny7a6l587cxk01lb8s6fni42as40zhhk8fyd2fm4cc8ii"; depends=[ggplot2 ggrepel gridExtra lattice latticeExtra png prettydoc readxl rmarkdown rvest xml2]; }; - MACSr = derive2 { name="MACSr"; version="1.0.0"; sha256="0a2ywmwi7xggh1gx94q8yvm74mqllmhyy07y9qkmhgnlb2v1438i"; depends=[AnnotationHub basilisk ExperimentHub reticulate S4Vectors]; }; - MADSEQ = derive2 { name="MADSEQ"; version="1.18.0"; sha256="1a5mhns830av73bp29yzzlg990alkz7rs43648cl0v2hh78300y1"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 coda GenomeInfoDb GenomicAlignments GenomicRanges IRanges preprocessCore rjags Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation vcfR VGAM zlibbioc]; }; - MAGAR = derive2 { name="MAGAR"; version="1.0.1"; sha256="0aqnkmznfs6nl9iwn41hah606mlgwhz8xsc445y8ifc0xs3bllzw"; depends=[argparse bigstatsr crlmm data_table doParallel ff HDF5Array igraph impute jsonlite plyr reshape2 rjson RnBeads RnBeads_hg19 snpStats UpSetR]; }; - MAGeCKFlute = derive2 { name="MAGeCKFlute"; version="1.12.0"; sha256="0fhbsb2z8nv1r9mhxsdgb1mp5x96p2zry0ikrmn4a8rrz0wwvm56"; depends=[Biobase clusterProfiler enrichplot ggplot2 ggrepel gridExtra reshape2]; }; - MAIT = derive2 { name="MAIT"; version="1.26.0"; sha256="1krkcvppa5zbl5i7pj5lh0pi9c0n8fs64dsglvr0m5ym7knj7kr4"; depends=[agricolae CAMERA caret class e1071 gplots MASS pls plsgenomics Rcpp xcms]; }; - MANOR = derive2 { name="MANOR"; version="1.64.0"; sha256="022j9fwqii2i524g97pqfj7n6zj2jm44ccd7937lyjzsylvm51hp"; depends=[GLAD]; }; - MAST = derive2 { name="MAST"; version="1.18.0"; sha256="1gkpagam5rap36viyr3n4psa658x9vckrxap1h67jasiiyrcfz2d"; depends=[abind Biobase BiocGenerics data_table ggplot2 plyr progress reshape2 S4Vectors SingleCellExperiment stringr SummarizedExperiment]; }; - MBASED = derive2 { name="MBASED"; version="1.26.0"; sha256="0mmlsd5sc8y6w1gg93ic2jixlvxzhnj2qb20sh1zv5b0lyfmif8z"; depends=[BiocGenerics BiocParallel GenomicRanges RUnit SummarizedExperiment]; }; - MBAmethyl = derive2 { name="MBAmethyl"; version="1.26.0"; sha256="1lfxygbwvygpv99wrxgyc5dbz0ih4ggbvf5f5a9s5wnkpvf9jylf"; depends=[]; }; - MBCB = derive2 { name="MBCB"; version="1.46.0"; sha256="19a06dwdmznj6qhyrplkcxdlc4983q54bay5bjvbxr43vik7b4df"; depends=[preprocessCore tcltk2]; }; - MBQN = derive2 { name="MBQN"; version="2.4.0"; sha256="0nq41kk2rw1jh7rs89dr31bjqdd5z40mya4k1cwa7dah03s96q5q"; depends=[BiocFileCache ggplot2 limma PairedData preprocessCore rappdirs RCurl rpx SummarizedExperiment xml2]; }; - MBttest = derive2 { name="MBttest"; version="1.20.0"; sha256="0cr3bcdlbd3khx96hk2561ifm7s3v6ari8wbg1c5scji460n4dyk"; depends=[gplots gtools]; }; - MCbiclust = derive2 { name="MCbiclust"; version="1.16.0"; sha256="0dhxdd66x094nyspr86hwjlkpva41r5qacc5s7ipn9lyrlrq51f1"; depends=[AnnotationDbi BiocParallel cluster GGally ggplot2 GO_db org_Hs_eg_db scales WGCNA]; }; - MDTS = derive2 { name="MDTS"; version="1.12.0"; sha256="04fazzkqq0vr0rjzzcd2sikfh9fmll8jh28030q3j7y8aibb9fj5"; depends=[Biostrings DNAcopy GenomicAlignments GenomicRanges IRanges Rsamtools stringr]; }; - MEAL = derive2 { name="MEAL"; version="1.22.0"; sha256="0ydbxsbwlrhkzgx0fnrvy17qn3apzxp5wk1mm8833fg3gb3k3maw"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 Gviz IRanges isva limma matrixStats minfi missMethyl MultiDataSet permute S4Vectors SmartSVA SummarizedExperiment vegan]; }; - MEAT = derive2 { name="MEAT"; version="1.4.0"; sha256="111ks2734xx3giay9svaksxymgc58g7rljvinds5n1r2ncsfaz5y"; depends=[dplyr dynamicTreeCut glmnet impute minfi RPMM stringr SummarizedExperiment tibble wateRmelon]; }; - MEB = derive2 { name="MEB"; version="1.6.0"; sha256="166mxzv5y524k20ssv2xdwiyp06k483ry7mp8xq34rwqvnv6jgkw"; depends=[e1071 SummarizedExperiment]; }; - MEDIPS = derive2 { name="MEDIPS"; version="1.44.0"; sha256="0l57a5hz0lr3snaqb73bprrd1jk2hpq6qjicg7yaypr7hv1csa1i"; depends=[biomaRt Biostrings BSgenome DNAcopy edgeR GenomicRanges gtools IRanges preprocessCore Rsamtools rtracklayer]; }; - MEDME = derive2 { name="MEDME"; version="1.52.0"; sha256="19kw0dsarylvzmmmh6hrvwgzp2d5v2d3c096x1w77y03q2261gmm"; depends=[Biostrings drc MASS]; }; - MEIGOR = derive2 { name="MEIGOR"; version="1.26.0"; sha256="1b657d7xfcx9rkf4ilpjvad8296x36cj5sixp7xh4iyy7i1y4r8s"; depends=[CNORode deSolve Rsolnp snowfall]; }; - MGFM = derive2 { name="MGFM"; version="1.26.0"; sha256="08nb9cdxmcs4pfk3i0g5w6dn0flxvl2hdvvzr4578r4l79qcc3da"; depends=[annotate AnnotationDbi]; }; - MGFR = derive2 { name="MGFR"; version="1.18.0"; sha256="1gk7rzm5r7adm8grslpnhg4hx2jj7m75280br5g6ikgzz76q23n5"; depends=[annotate biomaRt]; }; - MIGSA = derive2 { name="MIGSA"; version="1.16.0"; sha256="0mhbjb7scrmnvaimk8b3jfdwda1vkh6zqhc1qyd6w86wji3pqqk0"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel data_table edgeR futile_logger ggdendro ggplot2 GO_db GOstats graph GSEABase ismev jsonlite limma matrixStats org_Hs_eg_db RBGL reshape2 Rgraphviz vegan]; }; - MIMOSA = derive2 { name="MIMOSA"; version="1.30.0"; sha256="078myiqzrkv3f17mafqjd8znsmhv2mpsc5rdwf1yicj88shc2q3g"; depends=[Biobase coda data_table dplyr Formula ggplot2 MASS MCMCpack modeest plyr pracma Rcpp RcppArmadillo reshape rlang scales testthat tidyr]; }; - MIRA = derive2 { name="MIRA"; version="1.14.0"; sha256="0pymi0zcv16x7g4f0kj9cfa7fjcxpphlwvjq1sdy74p8lkmzcqfs"; depends=[Biobase BiocGenerics bsseq data_table GenomicRanges ggplot2 IRanges S4Vectors]; }; - MLInterfaces = derive2 { name="MLInterfaces"; version="1.72.0"; sha256="0ipzv7wdvfqhdyjiak956qq201igsdxm6dr6rh3dj6cssgsrnrpb"; depends=[annotate Biobase BiocGenerics cluster fpc gbm gdata genefilter ggvis hwriter magrittr MASS mlbench pls RColorBrewer Rcpp rpart sfsmisc shiny threejs]; }; - MLP = derive2 { name="MLP"; version="1.40.0"; sha256="0nnvnlkngipsdgky489hdwyazg9iqp5xqv8m3zjgn55p07yw6j3l"; depends=[AnnotationDbi gplots]; }; - MLSeq = derive2 { name="MLSeq"; version="2.10.0"; sha256="0yww4w66rjbk3gbj86wd07i2z6ic4vjcxy7cacrvbvwkjbdxkzb4"; depends=[Biobase caret DESeq2 edgeR foreach ggplot2 limma plyr sSeq SummarizedExperiment xtable]; }; - MMAPPR2 = derive2 { name="MMAPPR2"; version="1.6.0"; sha256="0dgsszfv3pgmbnns5pxaixkfni5k4c995247cfvkmz5gbwrlfh1g"; depends=[Biobase BiocGenerics BiocParallel data_table dplyr ensemblVEP GenomeInfoDb GenomicRanges gmapR IRanges magrittr Rsamtools S4Vectors stringr tidyr VariantAnnotation VariantTools]; }; - MMDiff2 = derive2 { name="MMDiff2"; version="1.20.0"; sha256="1k7zgn9m7plfqqjsw6rlwcf28cysp3xg05krz8qii066plms291f"; depends=[Biobase Biostrings BSgenome GenomicRanges ggplot2 locfit RColorBrewer Rsamtools S4Vectors shiny]; }; - MMUPHin = derive2 { name="MMUPHin"; version="1.6.2"; sha256="1hagg3fyyr6wzy02rcpd5rmniah78q5ndh1w7l4pc4mrmbfs4srn"; depends=[cowplot dplyr fpc ggplot2 igraph Maaslin2 metafor tidyr]; }; - MODA = derive2 { name="MODA"; version="1.18.0"; sha256="02yzc9sg2yqbr05zxw2mqd2fizy0r0fh0g6wszljzcabbadwxbcn"; depends=[AMOUNTAIN cluster dynamicTreeCut igraph RColorBrewer WGCNA]; }; - MOFA2 = derive2 { name="MOFA2"; version="1.2.2"; sha256="1hx1bgcyjcs5kan13dg2i4a43m3p0981cqdxizrz1j43xf6h26ln"; depends=[basilisk corrplot cowplot DelayedArray dplyr forcats ggplot2 ggrepel HDF5Array magrittr pheatmap RColorBrewer reshape2 reticulate rhdf5 Rtsne stringi tidyr uwot]; }; - MOGAMUN = derive2 { name="MOGAMUN"; version="1.2.1"; sha256="1x0v7ha2a3ldqiwxyn9l9z2frbshpn04k5zy8rxhbk447b0hca5z"; depends=[BiocParallel igraph RCy3 RUnit stringr]; }; - MOMA = derive2 { name="MOMA"; version="1.4.0"; sha256="0pig4kcr1bwwvg4shy20w8dnx9q3l9faz19qxn8d6hmd6ff91yhz"; depends=[circlize cluster ComplexHeatmap dplyr ggplot2 magrittr MKmisc MultiAssayExperiment qvalue RColorBrewer readr reshape2 rlang stringr tibble tidyr]; }; - MOSim = derive2 { name="MOSim"; version="1.6.0"; sha256="0dy0z5fbhhh4vwn2dd5cdkdfc5vwjxl408lszvyhvlszacq5viq4"; depends=[Biobase dplyr ggplot2 HiddenMarkov IRanges lazyeval matrixStats purrr rlang S4Vectors scales stringi stringr tibble tidyr zoo]; }; - MPFE = derive2 { name="MPFE"; version="1.28.0"; sha256="17y8cahvrp9x29dd59ybhcxvdiw1n2gj08zv2yfycbksvarymlpp"; depends=[]; }; - MPRAnalyze = derive2 { name="MPRAnalyze"; version="1.10.0"; sha256="16p9gc40m3c6m2vrzj1k3sjfxi67xg7j09ssrahlw3lak5pf7412"; depends=[BiocParallel progress SummarizedExperiment]; }; - MQmetrics = derive2 { name="MQmetrics"; version="1.0.0"; sha256="0ndh271scf4kv8rkx6h0yjwkspxkr6rn5zh89dm45hhmp5dahm1a"; depends=[chron cowplot dplyr ggforce ggplot2 ggpubr ggridges gridExtra gtable knitr magrittr plyr purrr RColorBrewer readr reshape2 rlang rmarkdown scales stringr tidyr]; }; - MSEADbi = derive2 { name="MSEADbi"; version="1.2.0"; sha256="1g1kg3nh7iwg5nrpmig6srw6as4yfwmbqn965pffrk0zp19llsbf"; depends=[AnnotationDbi Biobase DBI RSQLite]; }; - MSGFgui = derive2 { name="MSGFgui"; version="1.26.0"; sha256="05gg4a7a3w7g0mhmcycn3w9p714w1d1jgfxs29ifk50c5ji95gxp"; depends=[MSGFplus mzID mzR shiny shinyFiles xlsx]; }; - MSGFplus = derive2 { name="MSGFplus"; version="1.26.0"; sha256="069vn4bjb4xlgn0msrj56gx5rmm5zh35y00045q1jjv4w6q58c5w"; depends=[mzID ProtGenerics]; }; - MSPrep = derive2 { name="MSPrep"; version="1.2.0"; sha256="1d27gvrz8vs9wvcmq8ld4nyl6aklmxa955k8qah8c4xsb2swwqvi"; depends=[crmn ddpcr dplyr magrittr missForest pcaMethods preprocessCore rlang S4Vectors stringr SummarizedExperiment sva tibble tidyr VIM]; }; - MSnID = derive2 { name="MSnID"; version="1.26.0"; sha256="0r3vgigf4fk0xzfg8gcvad01jdh0fysh6x22m9qy77x6glyrxcj2"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics BiocStyle Biostrings data_table doParallel dplyr foreach ggplot2 iterators msmsTests MSnbase mzID mzR ProtGenerics purrr R_cache Rcpp reshape2 rlang RUnit stringr tibble xtable]; }; - MSnbase = derive2 { name="MSnbase"; version="2.18.0"; sha256="1z7s17j6zgb70m0khyf9icqlnbnzlivca7vw7j0vxyw417ld9lkr"; depends=[affy Biobase BiocGenerics BiocParallel digest ggplot2 impute IRanges lattice MALDIquant MASS MsCoreUtils mzID mzR pcaMethods plyr ProtGenerics Rcpp S4Vectors scales vsn XML]; }; - MSstats = derive2 { name="MSstats"; version="4.0.1"; sha256="1x5cxz4i65fv055ksj6jsiaj60px457hqkhp58rhvaf8cg9gvf8c"; depends=[checkmate data_table ggplot2 ggrepel gplots limma lme4 marray MASS MSstatsConvert preprocessCore Rcpp RcppArmadillo survival]; }; - MSstatsConvert = derive2 { name="MSstatsConvert"; version="1.2.2"; sha256="1mwxlbv7jb61in0zsrsy09prhgv54nh5wkj3zcs89lgvc813jgpm"; depends=[checkmate data_table log4r stringi]; }; - MSstatsLOBD = derive2 { name="MSstatsLOBD"; version="1.0.0"; sha256="09mlgcvj7a30c6rryr1zx7743gxpwcz7xyxcvfgd4ci492i3s670"; depends=[ggplot2 minpack_lm Rcpp]; }; - MSstatsPTM = derive2 { name="MSstatsPTM"; version="1.2.4"; sha256="11byb6hiahsn33k2myav7g66fx9514idxpr7vzf6v49jiz53b9qc"; depends=[Biostrings checkmate data_table dplyr ggplot2 ggrepel gridExtra MSstats MSstatsConvert MSstatsTMT Rcpp stringr]; }; - MSstatsQC = derive2 { name="MSstatsQC"; version="2.10.0"; sha256="0z62xy689qbbwak6j1kqhagm0z8k9m7c8sdns59mc0xz1s6valh8"; depends=[dplyr ggExtra ggplot2 MSnbase plotly qcmetrics]; }; - MSstatsQCgui = derive2 { name="MSstatsQCgui"; version="1.12.0"; sha256="0jr8x1fv648kky5w6438hdj9w151a7mbb4z28nds60k44bvk521v"; depends=[dplyr ggExtra gridExtra MSstatsQC plotly shiny]; }; - MSstatsSampleSize = derive2 { name="MSstatsSampleSize"; version="1.6.0"; sha256="0cyddrm3wj28apik58wnm698gwbz5d8q5b7w4x1mp2qsp7af6c7y"; depends=[BiocParallel caret ggplot2 gridExtra MSstats reshape2]; }; - MSstatsTMT = derive2 { name="MSstatsTMT"; version="2.0.1"; sha256="117p64fagkyykx8iiyiijdmkqpz9mk5r4r978g6g89677jj2nspj"; depends=[checkmate data_table ggplot2 limma lme4 lmerTest MSstats MSstatsConvert]; }; + ABAEnrichment = derive2 { name="ABAEnrichment"; version="1.24.0"; sha256="1sp3f72rzlr822dxx42bswynrwwfx6f520hdhfdikqp13p2y4044"; depends=[ABAData data_table GOfuncR gplots gtools Rcpp]; }; + ABSSeq = derive2 { name="ABSSeq"; version="1.48.0"; sha256="0l2hh6qv4lhw1g1kciw2f3ssj3lw83hqxnkmxzmv7snik3k6i650"; depends=[limma locfit]; }; + ABarray = derive2 { name="ABarray"; version="1.62.0"; sha256="0yh7jmkwdg3kmm98ii0cxbla3s5bwy84fpg6xcpggsrriwzwfb5k"; depends=[Biobase multtest]; }; + ACE = derive2 { name="ACE"; version="1.12.0"; sha256="1nkbxldn5ba4fzfh4skwjc37gm6apwp09vzwnj2jw3b7ivmr0yr6"; depends=[Biobase GenomicRanges ggplot2 QDNAseq]; }; + ACME = derive2 { name="ACME"; version="2.50.0"; sha256="0h4bqbbqcwc938q7lysk5l35f64xz9d1bsniv2wshmlr4rr0zpcg"; depends=[Biobase BiocGenerics]; }; + ADAM = derive2 { name="ADAM"; version="1.10.0"; sha256="18zwci0ab54q7rdwj0n63w0i14lfrb4cccp09bcrq10gl1ki07f5"; depends=[dplyr DT GO_db KEGGREST knitr pbapply Rcpp stringr SummarizedExperiment]; }; + ADAMgui = derive2 { name="ADAMgui"; version="1.10.0"; sha256="0n06bb9djigha0249lxx84pn9q0xiryxbv25qsc3p2h46iaxi3wq"; depends=[ADAM colorRamps data_table dplyr DT ggplot2 ggpubr ggrepel ggsignif GO_db gridExtra knitr RColorBrewer reshape2 shiny shinyjs stringi stringr testthat varhandle]; }; + ADImpute = derive2 { name="ADImpute"; version="1.4.0"; sha256="1bkq1hd8sqg9r28r70a9vd3gb2nsmg6dybf002d621p88cdfjib2"; depends=[BiocParallel checkmate data_table DrImpute kernlab MASS Matrix rsvd S4Vectors SAVER SingleCellExperiment SummarizedExperiment]; }; + ADaCGH2 = derive2 { name="ADaCGH2"; version="2.34.0"; sha256="0a01wds33i2h2whigznbrxq38irlxm20qpwix33x6vlxbjgrckal"; depends=[aCGH bit cluster DNAcopy ff ffbase GLAD snapCGH tilingArray waveslim]; }; + AGDEX = derive2 { name="AGDEX"; version="1.42.0"; sha256="0y0q4zdybr5hlsi7qy2hf6c2sqr2z2211wz36dz70jkqyr0ggw64"; depends=[Biobase GSEABase]; }; + AIMS = derive2 { name="AIMS"; version="1.26.0"; sha256="1jsvyddv4cy3a53agprqkpfv1a7p384d462675k73dh8paid90nq"; depends=[Biobase e1071]; }; + ALDEx2 = derive2 { name="ALDEx2"; version="1.26.0"; sha256="1k57ifczqj47r8v2m08kmqr4vsrc5vsh7zs18vspvd6xd0qd03xf"; depends=[BiocParallel GenomicRanges IRanges multtest Rfast S4Vectors SummarizedExperiment zCompositions]; }; + AMARETTO = derive2 { name="AMARETTO"; version="1.10.0"; sha256="1arjh3n5wcm3ss4czfqd2m8nipy264vixvv5kij8ifqsgsipsx0p"; depends=[BiocFileCache callr circlize ComplexHeatmap curatedTCGAData doParallel dplyr DT foreach ggplot2 glmnet gridExtra httr impute knitr limma Matrix matrixStats MultiAssayExperiment Rcpp readr reshape2 rmarkdown tibble]; }; + AMOUNTAIN = derive2 { name="AMOUNTAIN"; version="1.20.0"; sha256="1gsngb14qskgzbs4d45bh283lpiqpbrns04k1jzdhlg71344307x"; depends=[]; }; + ANCOMBC = derive2 { name="ANCOMBC"; version="1.4.0"; sha256="113rgy2wdypzppcd1pvng9b433bhb6nmhp79k56sr92l26i6nn4h"; depends=[MASS microbiome nloptr phyloseq Rdpack]; }; + ANF = derive2 { name="ANF"; version="1.16.0"; sha256="19irzhi7ph29vyq6d7jm8i5nf7bavxsn0nasl56l1h5xlzc9iak7"; depends=[Biobase igraph MASS RColorBrewer survival]; }; + APAlyzer = derive2 { name="APAlyzer"; version="1.8.0"; sha256="027bz9r88k3cqvjap2x2prg9qbi57n21p85ffrf0cnd1ivap2zqw"; depends=[DESeq2 dplyr ensembldb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel repmis Rsamtools Rsubread rtracklayer SummarizedExperiment tidyr VariantAnnotation]; }; + ARRmNormalization = derive2 { name="ARRmNormalization"; version="1.34.0"; sha256="1ryqr3mpakjml0jhbk28k2z511sdl87wxdczxq1rwx98s0pc9mnh"; depends=[ARRmData]; }; + ASAFE = derive2 { name="ASAFE"; version="1.20.0"; sha256="0g93zg8drg2sgkn6z1rri9aas4vyi3wn9yfq4pz92500s1zz1wxx"; depends=[]; }; + ASEB = derive2 { name="ASEB"; version="1.38.0"; sha256="15jdibzp9z1qcspcybg4r0agjslbqqab96b5scfh3xk71blif1r6"; depends=[]; }; + ASGSCA = derive2 { name="ASGSCA"; version="1.28.0"; sha256="03h604c5n4lz8dj2irmlfigk6lsip8f8x9app7xq21vjwcwqjhiz"; depends=[MASS Matrix]; }; + ASICS = derive2 { name="ASICS"; version="2.10.0"; sha256="18g9kvzvf91kj2a7xj0i9h2gg1vh0gz5109d3ri8cpgid8bdp24x"; depends=[BiocParallel ggplot2 glmnet gridExtra Matrix mvtnorm PepsNMR plyr quadprog ropls SummarizedExperiment zoo]; }; + ASSET = derive2 { name="ASSET"; version="2.12.0"; sha256="0zni27hl583bi2pzip2v2469cv5rdzkpnqnyx81j9a1gzgg2swyn"; depends=[MASS msm rmeta]; }; + ASSIGN = derive2 { name="ASSIGN"; version="1.30.0"; sha256="0j8kvn5pq29wqjdcsq6smawdvxb7ccam3m5z223mkwww24m92qyw"; depends=[ggplot2 gplots msm Rlab sva yaml]; }; + ASpediaFI = derive2 { name="ASpediaFI"; version="1.8.0"; sha256="0q33ir3chlix9qvw9drjrwzckk5s1vkj7gfdsffrslxsyl0nizx7"; depends=[BiocParallel biomaRt dplyr DRaWR e1071 fgsea GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 Gviz igraph IRanges IVAS limma Matrix mGSZ reshape2 ROCR Rsamtools rtracklayer S4Vectors scales SummarizedExperiment]; }; + ASpli = derive2 { name="ASpli"; version="2.4.0"; sha256="0548p8k3a379qqw7d80rbc7hm1g9bx4vmadxm0gmjph9akx56f3h"; depends=[AnnotationDbi BiocGenerics BiocStyle data_table DT edgeR GenomicAlignments GenomicFeatures GenomicRanges Gviz htmltools igraph IRanges limma MASS pbmcapply Rsamtools S4Vectors tidyr UpSetR]; }; + ATACseqQC = derive2 { name="ATACseqQC"; version="1.18.0"; sha256="0i1i3bfkp1xsjdl1nd56mlh66qz3aasd1hp09d4i31njz2f9znwn"; depends=[BiocGenerics Biostrings BSgenome ChIPpeakAnno edgeR GenomeInfoDb GenomicAlignments GenomicRanges GenomicScores IRanges KernSmooth limma motifStack preseqR randomForest Rsamtools rtracklayer S4Vectors]; }; + AUCell = derive2 { name="AUCell"; version="1.16.0"; sha256="1lclf8hkhrm6g5fp8yhvjxnwgf8p0j9ffxsmcybz4rjvmwkiz5dp"; depends=[BiocGenerics data_table GSEABase mixtools R_utils S4Vectors shiny SummarizedExperiment]; }; + AWFisher = derive2 { name="AWFisher"; version="1.8.0"; sha256="1i9niknq2bnhwjdvl4f5hmdhg0p5vn9p6b6bb8fanfsijq0cn37p"; depends=[edgeR limma]; }; + AffiXcan = derive2 { name="AffiXcan"; version="1.12.0"; sha256="06yn87briv2141jqad934gg5rcd90w5nghrgmbhqnmwafn72gj9d"; depends=[BiocParallel crayon MultiAssayExperiment SummarizedExperiment]; }; + AffyCompatible = derive2 { name="AffyCompatible"; version="1.54.0"; sha256="1qlfh1gcwa6akd5dhdqh260yaw1j6dap6a15ghwf74rchi5218sg"; depends=[Biostrings RCurl XML]; }; + AffyRNADegradation = derive2 { name="AffyRNADegradation"; version="1.40.0"; sha256="00hzr62xn1i1w4g8krsxhivzwn8hd7hwhkdxyrpz6cs9vgr4x9kd"; depends=[affy]; }; + AgiMicroRna = derive2 { name="AgiMicroRna"; version="2.44.0"; sha256="05m9lr9qxyzp965lryrsbhjb2wadq47pwz9crwmd3ml9pfk25m6p"; depends=[affy affycoretools Biobase limma preprocessCore]; }; + AllelicImbalance = derive2 { name="AllelicImbalance"; version="1.32.0"; sha256="1s6arjd0nxgxyqy7vhqcb78k0ss7vwrhv41pm346hs1nyr5dkzaq"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gridExtra Gviz IRanges lattice latticeExtra nlme Rsamtools S4Vectors seqinr SummarizedExperiment VariantAnnotation]; }; + AlphaBeta = derive2 { name="AlphaBeta"; version="1.8.0"; sha256="0ya3dqvdf8iyd5bscc9lc476vkc7kamiqgjvxhxl4ay5j4vn02nr"; depends=[BiocParallel data_table dplyr expm ggplot2 gtools igraph optimx plotly stringr]; }; + AlpsNMR = derive2 { name="AlpsNMR"; version="3.4.0"; sha256="0h8y9hi97zbv3qzjskxh81qjarmwx2w790kpspljgxa214f58fzv"; depends=[assertthat baseline BiocParallel dplyr fs furrr future GGally ggplot2 ggrepel glue htmltools magrittr matrixStats mixOmics pcaPP plyr purrr readxl reshape2 rlang rmarkdown S4Vectors signal speaq stringr SummarizedExperiment tibble tidyr tidyselect vctrs writexl zip]; }; + AnVIL = derive2 { name="AnVIL"; version="1.6.0"; sha256="1a4jjrwc8hmcaq35jzyf3k3pva1zisbsz1vdmv25qgjirf9m357h"; depends=[BiocManager dplyr futile_logger httr jsonlite rapiclient rlang tibble tidyr tidyselect]; }; + AnVILBilling = derive2 { name="AnVILBilling"; version="1.4.0"; sha256="0pg5r6qn18i91z2ixapdkranaacv9z8ljmdb33vdn2dqwv2w85b1"; depends=[bigrquery DBI dplyr DT ggplot2 lubridate magrittr plotly shiny shinytoastr]; }; + AnVILPublish = derive2 { name="AnVILPublish"; version="1.4.1"; sha256="0jvh22kz9mg4r49mbzvbvzbn58lzj5mvk7qb4pizn4sd8xsbvmyq"; depends=[AnVIL httr jsonlite readr rmarkdown whisker yaml]; }; + Anaquin = derive2 { name="Anaquin"; version="2.18.0"; sha256="0b9clpqy2jfhign30nab1369xswrkmqm6dx14mf6wjrvcl9xpm2s"; depends=[DESeq2 ggplot2 knitr locfit plyr qvalue ROCR]; }; + AneuFinder = derive2 { name="AneuFinder"; version="1.22.0"; sha256="0xn8952fkchhx7m8dam6gjy86j551xp1cs67510s1qrmfgzpkjp0"; depends=[AneuFinderData bamsignals BiocGenerics Biostrings cowplot DNAcopy doParallel ecp foreach GenomeInfoDb GenomicAlignments GenomicRanges ggdendro ggplot2 ggrepel IRanges mclust ReorderCluster reshape2 Rsamtools S4Vectors]; }; + AnnotationDbi = derive2 { name="AnnotationDbi"; version="1.56.1"; sha256="1svh5zcb7ymz463z5641l2cvzniswxasjjix2plfhqs0yqf1j9qg"; depends=[Biobase BiocGenerics DBI IRanges KEGGREST RSQLite S4Vectors]; }; + AnnotationFilter = derive2 { name="AnnotationFilter"; version="1.18.0"; sha256="15fp1228yb06jm5cblvhw3qv9mlpbjfggaz2nvi3p46mby1vs64w"; depends=[GenomicRanges lazyeval]; }; + AnnotationForge = derive2 { name="AnnotationForge"; version="1.36.0"; sha256="02wvni5q560idi6677g5f4md73z4qzjl5yycxv5dbvgbl2picisz"; depends=[AnnotationDbi Biobase BiocGenerics DBI RCurl RSQLite S4Vectors XML]; }; + AnnotationHub = derive2 { name="AnnotationHub"; version="3.2.0"; sha256="0ks8yzvvs2r66pb9687mkskf0n3wgvp7h92k83b0a1q32sca5wng"; depends=[AnnotationDbi BiocFileCache BiocGenerics BiocManager BiocVersion curl dplyr httr interactiveDisplayBase rappdirs RSQLite S4Vectors yaml]; }; + AnnotationHubData = derive2 { name="AnnotationHubData"; version="1.24.0"; sha256="19z7jsfmd4f154l6i270107pp5jqj4qqcl10ymfpx87w6i3jdy7w"; depends=[AnnotationDbi AnnotationForge AnnotationHub Biobase BiocCheck BiocGenerics BiocManager biocViews Biostrings DBI futile_logger GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges jsonlite OrganismDbi RCurl Rsamtools RSQLite rtracklayer S4Vectors XML]; }; + ArrayExpress = derive2 { name="ArrayExpress"; version="1.54.0"; sha256="1rfvycrjlw0x1sqjrmiyf8i7yjiwjqf8x83i7pfg78yg9k5sh9vi"; depends=[Biobase limma oligo XML]; }; + ArrayExpressHTS = derive2 { name="ArrayExpressHTS"; version="1.44.0"; sha256="1mjnddy05y06bn25xcjdx8kz538z3k4gvyqrb1lg4z8593xaw40i"; depends=[Biobase BiocGenerics biomaRt Biostrings bitops edgeR GenomicRanges Hmisc IRanges R2HTML RColorBrewer Rhtslib rJava Rsamtools sampling sendmailR ShortRead snow svMisc XML]; }; + AssessORF = derive2 { name="AssessORF"; version="1.12.0"; sha256="0rn2ijnpa8a6w2zv3cvm1s5bhcvzmb4xk18d96wjc60gxk51i5wy"; depends=[Biostrings DECIPHER GenomicRanges IRanges]; }; + Autotuner = derive2 { name="Autotuner"; version="1.7.0"; sha256="0k07gs6bnxs0894iqi1lhk96mifjcdf68bv4q9fjv50nzqpzqd8l"; depends=[assertthat Biobase cluster entropy MSnbase mzR RColorBrewer scales]; }; + BAC = derive2 { name="BAC"; version="1.54.0"; sha256="1xplpx3r34l3h43a4zgv9s5z4sw61vlq828gqwc7f0i73a2jbck3"; depends=[]; }; + BADER = derive2 { name="BADER"; version="1.32.0"; sha256="1ngi4nrw0gfz7k4x1c5harl6a9bxfv8m7f1smxs5awnwr0jnv9pa"; depends=[]; }; + BAGS = derive2 { name="BAGS"; version="2.34.0"; sha256="0lkg4c4ay20bhas9lr6aifxhw0yhh999v6d1kbbplw4hhd1b93ha"; depends=[Biobase breastCancerVDX]; }; + BANDITS = derive2 { name="BANDITS"; version="1.10.0"; sha256="0c6a6hkm381xdlzx7mndzqsnxrmrkd0h7nh04w5rmnbk0g6psfi5"; depends=[BiocParallel data_table doParallel doRNG DRIMSeq foreach ggplot2 MASS R_utils Rcpp RcppArmadillo]; }; + BASiCS = derive2 { name="BASiCS"; version="2.6.0"; sha256="0nn4l94qnz0z19rav3agvwiq0726rmazpjpga4832p83lqg2ab1d"; depends=[assertthat Biobase BiocGenerics BiocParallel coda cowplot ggExtra ggplot2 hexbin MASS Matrix matrixStats Rcpp RcppArmadillo reshape2 S4Vectors scran scuttle SingleCellExperiment SummarizedExperiment viridis]; }; + BBCAnalyzer = derive2 { name="BBCAnalyzer"; version="1.24.0"; sha256="1h4s5341jfmcvad83idlj1d1nhqapagx5jnvp9lv1p4df8gf38b4"; depends=[Biostrings GenomicRanges IRanges Rsamtools SummarizedExperiment VariantAnnotation]; }; + BCRANK = derive2 { name="BCRANK"; version="1.56.0"; sha256="01lzqs6zzag4s9aa409rd57qk0wfxmnrlryc28cy0yiv2bl8g7dz"; depends=[Biostrings]; }; + BDMMAcorrect = derive2 { name="BDMMAcorrect"; version="1.12.0"; sha256="1nppwmqlhrl61rwh1n5b9nr5q5lc0ny8dj6pfdcqx5lkvaphzssb"; depends=[ape ellipse ggplot2 Rcpp RcppArmadillo RcppEigen SummarizedExperiment vegan]; }; + BEARscc = derive2 { name="BEARscc"; version="1.14.0"; sha256="0n408rbpyjap0np2ih6svqkiq9g14rgbc0d52x3gv7x8xp5n7ckz"; depends=[data_table ggplot2 SingleCellExperiment]; }; + BEAT = derive2 { name="BEAT"; version="1.32.0"; sha256="0ah1fzjdb67925lkr23fk7i016mhwqd6i5zw40bnnzr9w9wk7gb5"; depends=[Biostrings BSgenome GenomicRanges ShortRead]; }; + BEclear = derive2 { name="BEclear"; version="2.10.0"; sha256="1njb1lfd4wmsrfw06jc8z8vdk14nmcw9lwyvbxr7z1zg4h8v6c29"; depends=[abind BiocParallel data_table futile_logger Matrix outliers Rcpp Rdpack]; }; + BGmix = derive2 { name="BGmix"; version="1.54.0"; sha256="0x1sx319yfxgkscr9r62msq00ddvmzryzn42wy4dh5pvjmgifkkn"; depends=[KernSmooth]; }; + BHC = derive2 { name="BHC"; version="1.46.0"; sha256="09nw4ljc9sn7iw09ha0m614hmdjj193xhhav5x5p07l501kks6h2"; depends=[]; }; + BLMA = derive2 { name="BLMA"; version="1.18.0"; sha256="1ipycmm0kwxdxxff8gc611rf6ki3fw03d26v93y0i287ylim2yj1"; depends=[Biobase graph GSA limma metafor PADOG ROntoTools]; }; + BPRMeth = derive2 { name="BPRMeth"; version="1.20.0"; sha256="1x9lasyfpbvcpk4w4g921zwmf2qjc695l2vphjb2k5pw5sakcgkc"; depends=[assertthat BiocStyle cowplot data_table doParallel e1071 earth foreach GenomicRanges ggplot2 IRanges kernlab magrittr MASS matrixcalc mvtnorm randomForest Rcpp RcppArmadillo S4Vectors truncnorm]; }; + BRAIN = derive2 { name="BRAIN"; version="1.40.0"; sha256="117a4vxn3bf80gckyc93vcn285gihdwyd94zj7gdl3008ynmg6ir"; depends=[Biostrings lattice PolynomF]; }; + BRGenomics = derive2 { name="BRGenomics"; version="1.6.0"; sha256="05mqxsk2sjzv9vwwxv8mb9ahlis8rlx4kl0jhsh62fnivbmfny6w"; depends=[DESeq2 GenomeInfoDb GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; + BSgenome = derive2 { name="BSgenome"; version="1.62.0"; sha256="1b023dpy8ygq0kd6qy0mk97c66gzpf39y2s0n89kmv61z5sg0jyi"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges IRanges matrixStats Rsamtools rtracklayer S4Vectors XVector]; }; + BUMHMM = derive2 { name="BUMHMM"; version="1.18.0"; sha256="0p5an5xc1l0kprgr5dxvqcq8p6spsk2fxf5xh3z05s0qrpx435bv"; depends=[Biostrings devtools gtools IRanges stringi SummarizedExperiment]; }; + BUS = derive2 { name="BUS"; version="1.50.0"; sha256="181b830s7ikfz8x7wsw1myjsz706baiz7a350mz7db014hpfx51v"; depends=[infotheo minet]; }; + BUScorrect = derive2 { name="BUScorrect"; version="1.12.0"; sha256="09px9d0ylrjdq1hina7d68w9rr7wnq2vbsvc7syj0hr77dw6lmz8"; depends=[gplots SummarizedExperiment]; }; + BUSpaRse = derive2 { name="BUSpaRse"; version="1.8.0"; sha256="1619clhaqkm4x21plkf41hazbkd5y3a65ab0idpgxy1c03l11hnj"; depends=[AnnotationDbi AnnotationFilter BH BiocGenerics biomaRt Biostrings BSgenome dplyr ensembldb GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges magrittr Matrix plyranges Rcpp RcppArmadillo RcppProgress S4Vectors stringr tibble tidyr zeallot]; }; + BUSseq = derive2 { name="BUSseq"; version="1.0.0"; sha256="1v6rllmgxsc4rl5a9bwsvg92mm5dad5hw9lvrfdh8599hp09fm3z"; depends=[gplots S4Vectors SingleCellExperiment SummarizedExperiment]; }; + BaalChIP = derive2 { name="BaalChIP"; version="1.20.0"; sha256="1ys2gk2mvfr30lfydbixq8ycrqnbag0ib36kkzhhsmz0yr2a9cly"; depends=[coda doBy doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges reshape2 Rsamtools scales]; }; + BadRegionFinder = derive2 { name="BadRegionFinder"; version="1.22.0"; sha256="10w6vh53qhaq8ap8jmpdj3rbcnkhp18jgik4c0z6zyazpaz5rghq"; depends=[biomaRt GenomicRanges Rsamtools S4Vectors VariantAnnotation]; }; + BaseSpaceR = derive2 { name="BaseSpaceR"; version="1.38.0"; sha256="0j05xisdqivv4sj100yx2xz5mqy3yax2yd483xfd3vx9llabl8wl"; depends=[RCurl RJSONIO]; }; + Basic4Cseq = derive2 { name="Basic4Cseq"; version="1.30.0"; sha256="14in26rwd1rfq9amp2pxjxm119g2vxy73ylnm0sdjm9ih4wclpim"; depends=[Biostrings BSgenome_Ecoli_NCBI_20080805 caTools GenomicAlignments GenomicRanges RCircos]; }; + BasicSTARRseq = derive2 { name="BasicSTARRseq"; version="1.22.0"; sha256="14rs6fk15w2rddyqppf32n0c02gw83b7c8cpmsx11xz6fx7ib5k6"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges S4Vectors]; }; + BatchQC = derive2 { name="BatchQC"; version="1.22.0"; sha256="0rbpvgxzikpyhxbxksg7vwmy2r0gzw103dykx1awbxkkvrkhl7kf"; depends=[corpcor ggvis gplots heatmaply knitr limma Matrix matrixStats MCMCpack moments pander reshape2 rmarkdown shiny sva]; }; + BayesKnockdown = derive2 { name="BayesKnockdown"; version="1.20.0"; sha256="08sy0vv1mrbjvvf3ddgxc0ixrbi2mka2g8gjxmx3ylsb6w7vxcy4"; depends=[Biobase]; }; + BayesSpace = derive2 { name="BayesSpace"; version="1.4.0"; sha256="0dijc66a55mjm9clpx0668by3x7k57ihywjyf042sz8b8pf9ijd9"; depends=[assertthat BiocFileCache BiocSingular coda DirichletReg ggplot2 Matrix mclust purrr Rcpp RcppArmadillo RcppDist RcppProgress RCurl rhdf5 S4Vectors scales scater scran SingleCellExperiment SummarizedExperiment xgboost]; }; + BeadDataPackR = derive2 { name="BeadDataPackR"; version="1.46.0"; sha256="004cppgdy79fqw2szkgkxir0rxvn91bmfrq4g20sdr7cvh8kpfyi"; depends=[]; }; + BgeeCall = derive2 { name="BgeeCall"; version="1.10.0"; sha256="0rbbl8m48qcvl26lnf27jq108p7pi84m9ac3qcpjc0ax5wywbv16"; depends=[biomaRt Biostrings data_table dplyr GenomicFeatures jsonlite rhdf5 rslurm rtracklayer sjmisc tximport]; }; + BgeeDB = derive2 { name="BgeeDB"; version="2.20.0"; sha256="0pjymal01sjl5dc37g66wykgxnksarlbvwnbvhg7w0i7y92zavqk"; depends=[Biobase curl data_table digest dplyr graph R_utils RCurl RSQLite tidyr topGO]; }; + BiFET = derive2 { name="BiFET"; version="1.14.0"; sha256="0vidypvphnj76g4ra5ijrgqx2dnzw0fmvdvz35gsqswrr3k20jkk"; depends=[GenomicRanges poibin]; }; + BiGGR = derive2 { name="BiGGR"; version="1.30.0"; sha256="1g01666wwznk148776s4vr1hfi3dfl448dhgk4d1qy2wv6sxh9kr"; depends=[hyperdraw hypergraph LIM limSolve rsbml stringr]; }; + BiRewire = derive2 { name="BiRewire"; version="3.26.0"; sha256="0ki4rcwjgbixzy5q9s30ajx5zhpl18q50znrb60fchvl4hj9h93w"; depends=[igraph Matrix slam tsne]; }; + BiSeq = derive2 { name="BiSeq"; version="1.34.0"; sha256="05namdzj196rzjg3wqvamj3xpn039dbfhfpmc6p8ifxn9c9dnd3c"; depends=[betareg Biobase BiocGenerics Formula GenomeInfoDb GenomicRanges globaltest IRanges lokern rtracklayer S4Vectors SummarizedExperiment]; }; + BicARE = derive2 { name="BicARE"; version="1.52.0"; sha256="1g8vrsc05cysb36gsw8sfmr6dgbh4aji37vcq9qwkmkv3jgvnlf6"; depends=[Biobase GSEABase multtest]; }; + BindingSiteFinder = derive2 { name="BindingSiteFinder"; version="1.0.0"; sha256="0mvl2mh2px315ilfmf9ax5qjz3282l56qm1a0v142bb7cxld13v7"; depends=[GenomicRanges ggforce ggplot2 matrixStats rtracklayer S4Vectors tidyr]; }; + BioCor = derive2 { name="BioCor"; version="1.18.0"; sha256="0ii4g7438lb34ykidkbxw3v3k289k662rgbgayf9gak5avpkb2cq"; depends=[BiocParallel GSEABase Matrix]; }; + BioMM = derive2 { name="BioMM"; version="1.10.0"; sha256="1vrrfwfx4y7kaqc0pk1zmy7knpsg2n55pay3fhs0dig6v5zzdvz9"; depends=[BiocParallel CMplot e1071 ggplot2 glmnet imager lattice nsprcomp precrec ranger rms topGO vioplot xlsx]; }; + BioMVCClass = derive2 { name="BioMVCClass"; version="1.62.0"; sha256="0jqgazwz35gz11a7vzanyy2yalzalx0z0rw6y18nmk8dbv01nv2j"; depends=[Biobase graph MVCClass Rgraphviz]; }; + BioNERO = derive2 { name="BioNERO"; version="1.2.0"; sha256="0ddrzv1g46hvm52dzrcj5nbyyw9a16cqk8zg20wnkrh3qw1h4d9p"; depends=[BiocParallel ComplexHeatmap DESeq2 dynamicTreeCut GENIE3 ggnetwork ggnewscale ggplot2 ggpubr igraph intergraph matrixStats minet NetRep networkD3 RColorBrewer reshape2 SummarizedExperiment sva WGCNA]; }; + BioNet = derive2 { name="BioNet"; version="1.54.0"; sha256="05rj14jn4gn0hfn57amf19b8fqwkd3y2ji3mg7m1yg1w7n4qxqsg"; depends=[AnnotationDbi Biobase graph igraph RBGL]; }; + BioNetStat = derive2 { name="BioNetStat"; version="1.14.0"; sha256="13br8x4809hrr4ibz6iy5qjza9j6cazmkpvfikvw6bs588csxwf8"; depends=[BiocParallel DT ggplot2 Hmisc igraph knitr markdown pathview pheatmap plyr psych RColorBrewer RJSONIO rmarkdown shiny shinyBS whisker yaml]; }; + BioPlex = derive2 { name="BioPlex"; version="1.0.1"; sha256="0fzvr72rjhrq9aldzb2hs61x6f1hbmv1a6gcblmzj9f11hny8va1"; depends=[BiocFileCache GEOquery graph SummarizedExperiment]; }; + BioQC = derive2 { name="BioQC"; version="1.22.0"; sha256="190336qk0plg79gzvfn6wfplsi8nq0nj8508g7m0w3z6bdgwy407"; depends=[Biobase edgeR Rcpp]; }; + BioTIP = derive2 { name="BioTIP"; version="1.8.0"; sha256="0xmy5c4i9gf6d04gara6lbnnldqmzjaascb2pd2ih60jw2mvl4ys"; depends=[cluster GenomicRanges Hmisc igraph MASS psych stringr]; }; + Biobase = derive2 { name="Biobase"; version="2.54.0"; sha256="0kar2kgaayp5l7xv9zcxj61l01m8jlwnppql6qf01wsz36dacgww"; depends=[BiocGenerics]; }; + BiocCheck = derive2 { name="BiocCheck"; version="1.30.0"; sha256="0w9ddicyp9i8rxf92n9pghd9s6bb8jdjikaylrmkydhb7jbhan0y"; depends=[BiocManager biocViews codetools graph httr knitr optparse stringdist]; }; + BiocDockerManager = derive2 { name="BiocDockerManager"; version="1.6.0"; sha256="1kpdmpcngnl667bfffp9bkf8c31ipmhsncq0h9bf3a4k8b83pi0w"; depends=[dplyr httr memoise readr whisker]; }; + BiocFileCache = derive2 { name="BiocFileCache"; version="2.2.0"; sha256="11qayqmgv274hc4h1v222sma07wkxjm8002fl6w3yvi225zq1qc1"; depends=[curl DBI dbplyr dplyr filelock httr rappdirs RSQLite]; }; + BiocGenerics = derive2 { name="BiocGenerics"; version="0.40.0"; sha256="0nr5x4r8f2krnfrxm7wrzgzr7nbljypi985cbwx5hxhn95zmfifh"; depends=[]; }; + BiocIO = derive2 { name="BiocIO"; version="1.4.0"; sha256="1qg6v961sbj7qwyjx4z720f6h0kq693p7gc8q99my7gqkbbcxrfr"; depends=[BiocGenerics S4Vectors]; }; + BiocNeighbors = derive2 { name="BiocNeighbors"; version="1.12.0"; sha256="04in8l6j7frgm0a5dzphazfhn9cm8w775z5yir712jxa37mh1agr"; depends=[BiocParallel Matrix Rcpp RcppHNSW S4Vectors]; }; + BiocOncoTK = derive2 { name="BiocOncoTK"; version="1.14.0"; sha256="1h5s6wbc5n5x5d28rynxpcmaklxdhf72g9gg9fy8cg77niipvxd9"; depends=[bigrquery car ComplexHeatmap curatedTCGAData DBI dplyr DT GenomicFeatures GenomicRanges ggplot2 ggpubr graph httr IRanges magrittr plyr Rgraphviz rjson S4Vectors scales shiny SummarizedExperiment]; }; + BiocParallel = derive2 { name="BiocParallel"; version="1.28.0"; sha256="0jqgbpjppwinzw100qhc42kc95znq6xanl26bi8m9cq7yggbpra6"; depends=[BH futile_logger snow]; }; + BiocPkgTools = derive2 { name="BiocPkgTools"; version="1.12.0"; sha256="13m6h35938407ajj7fakl50g4p2wsvinkg0r2mwl1zwq88735arg"; depends=[BiocFileCache BiocManager biocViews dplyr DT gh graph htmltools htmlwidgets httr igraph jsonlite magrittr RBGL readr rlang rvest stringr tibble tidyr tidyselect xml2]; }; + BiocSet = derive2 { name="BiocSet"; version="1.8.0"; sha256="0ysm68gcalg3d91jx6vmdzra01vc6kvzqnvz557g3rnm0wkx12q6"; depends=[AnnotationDbi BiocIO dplyr KEGGREST ontologyIndex plyr rlang S4Vectors tibble tidyr]; }; + BiocSingular = derive2 { name="BiocSingular"; version="1.10.0"; sha256="0dkh6a23qymjcynppmpp3k1mzpfadv8dqyz410pxkqsxig4ldd4n"; depends=[beachmat BiocGenerics BiocParallel DelayedArray irlba Matrix Rcpp rsvd S4Vectors ScaledMatrix]; }; + BiocSklearn = derive2 { name="BiocSklearn"; version="1.16.0"; sha256="0iscm2h4i7b50h4bfrrcafai14aq5wa5987awpzyk285gwifp6aw"; depends=[basilisk knitr Rcpp reticulate SummarizedExperiment]; }; + BiocStyle = derive2 { name="BiocStyle"; version="2.22.0"; sha256="0xx6xr01sb5wig94515zxgw24r9fv0g962ajy87741civhq32lbd"; depends=[BiocManager bookdown knitr rmarkdown yaml]; }; + BiocVersion = derive2 { name="BiocVersion"; version="3.14.0"; sha256="0qwzkh2alw7xhjprh719la0lg1q38pmjbipy3s2fy79m4xy8y8ik"; depends=[]; }; + BiocWorkflowTools = derive2 { name="BiocWorkflowTools"; version="1.20.0"; sha256="1j9s8w5y8savcmh70npkanxacq1kipxnwk1wsiw5hwnp1p13ldaa"; depends=[BiocStyle bookdown git2r httr knitr rmarkdown rstudioapi stringr usethis]; }; + Biostrings = derive2 { name="Biostrings"; version="2.62.0"; sha256="11qkw863mkfz3mc55v2gmfr4w3xziqfb5pq3hmjqpn8vpw8ax3xq"; depends=[BiocGenerics crayon GenomeInfoDb IRanges S4Vectors XVector]; }; + BitSeq = derive2 { name="BitSeq"; version="1.38.0"; sha256="0pjhmxf6w8jk7rscr73bpfcgdb5ghm3ygiv9v9zwja4klw0xs444"; depends=[IRanges Rhtslib Rsamtools S4Vectors]; }; + BloodGen3Module = derive2 { name="BloodGen3Module"; version="1.2.0"; sha256="0a4xrr13ilw7m7zbsg4ghckd63aw1sx5np79hl5by7g06059r8a4"; depends=[circlize ComplexHeatmap ExperimentHub ggplot2 gtools limma matrixStats preprocessCore randomcoloR reshape2 SummarizedExperiment testthat V8]; }; + BrainSABER = derive2 { name="BrainSABER"; version="1.4.0"; sha256="0r4kv85badg42gfqx4dmg05d12fib2l3s52baixwsll87zppd4kr"; depends=[BiocFileCache biomaRt data_table lsa S4Vectors shiny SummarizedExperiment]; }; + BridgeDbR = derive2 { name="BridgeDbR"; version="2.4.0"; sha256="0wb03ggiq070f6g9y91icc6plyjx16xwl30hz6f4y19k7mc7k54r"; depends=[curl rJava]; }; + BrowserViz = derive2 { name="BrowserViz"; version="2.16.0"; sha256="097rpcz05hr9h8gzwyhcb4vy57lyswpy7dsg5a746n3zm6v46by6"; depends=[BiocGenerics httpuv jsonlite]; }; + BubbleTree = derive2 { name="BubbleTree"; version="2.24.0"; sha256="14v92dkk0smavsfsbpr4xa5rzyjp0yp0gvsgk4v93dnfb5mngwdr"; depends=[Biobase BiocGenerics BiocStyle biovizBase dplyr e1071 GenomicRanges ggplot2 gridExtra gtable gtools IRanges limma magrittr plyr RColorBrewer WriteXLS]; }; + BufferedMatrix = derive2 { name="BufferedMatrix"; version="1.58.0"; sha256="13qq4vwf9ajnx7n4kxhcxbvq599yzrdjifwrqmc8kqip7hiy2dkl"; depends=[]; }; + BufferedMatrixMethods = derive2 { name="BufferedMatrixMethods"; version="1.58.0"; sha256="02h0flir0bwki819jl4c4dnh8svw8n32y9fn1p9kakm911gzg125"; depends=[BufferedMatrix]; }; + BumpyMatrix = derive2 { name="BumpyMatrix"; version="1.2.0"; sha256="1i67h00admg2yz8c5g8mck0iqdyddy9vnhgy6wdfm070qmicx2g0"; depends=[IRanges Matrix S4Vectors]; }; + CAEN = derive2 { name="CAEN"; version="1.2.0"; sha256="0jxi9bgbb3dnhcgm93qx611bnl23s7lk9msmxqbnlyhjprmbsqnz"; depends=[PoiClaClu SummarizedExperiment]; }; + CAFE = derive2 { name="CAFE"; version="1.30.0"; sha256="130jidd1jxlgkv3sq8bgqyrn51dhb9yf67dlnjhf7xbvlyvx179g"; depends=[affy annotate Biobase biovizBase GenomicRanges ggbio ggplot2 gridExtra IRanges]; }; + CAGEfightR = derive2 { name="CAGEfightR"; version="1.14.0"; sha256="08v16d9al8l7a31sncwpi79i7770v5gr2bf2q7i07xxdsf496yr9"; depends=[assertthat BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicInteractions GenomicRanges Gviz InteractionSet IRanges Matrix pryr rtracklayer S4Vectors SummarizedExperiment]; }; + CAGEr = derive2 { name="CAGEr"; version="2.0.0"; sha256="0a116v3hxrfjm8fcq27vs260wygw0hbj4f3s063za8l45fdpamv6"; depends=[BiocGenerics BiocParallel BSgenome data_table DelayedArray DelayedMatrixStats formula_tools GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gtools IRanges KernSmooth memoise MultiAssayExperiment plyr reshape2 Rsamtools rtracklayer S4Vectors som stringdist stringi SummarizedExperiment vegan VGAM]; }; + CAMERA = derive2 { name="CAMERA"; version="1.50.0"; sha256="1mgdmzlbj8yhk6jmnqaw4xmss77v7csdajd240kiswvm1f317z3h"; depends=[Biobase graph Hmisc igraph RBGL xcms]; }; + CARNIVAL = derive2 { name="CARNIVAL"; version="2.4.0"; sha256="10wbdjripgndfaqx2aysmqhc9v8i94db8bf0bb89csmvmnia68c6"; depends=[dplyr igraph lpSolve readr rjson rmarkdown stringr]; }; + CATALYST = derive2 { name="CATALYST"; version="1.18.0"; sha256="15lah45lf16zh1ankbpjvz8zp38lldvq074nmvb99rhhqys2gbgi"; depends=[circlize ComplexHeatmap ConsensusClusterPlus cowplot data_table dplyr drc flowCore FlowSOM ggplot2 ggrepel ggridges gridExtra magrittr Matrix matrixStats nnls purrr RColorBrewer reshape2 Rtsne S4Vectors scales scater SingleCellExperiment SummarizedExperiment]; }; + CAnD = derive2 { name="CAnD"; version="1.26.0"; sha256="19c47m0i8sfp2frw6mnzr1bz3n196kgd53bisil6nix1pqsgjqba"; depends=[ggplot2 reshape]; }; + CCPROMISE = derive2 { name="CCPROMISE"; version="1.20.0"; sha256="0wkwgm85kkf7p3vwjvsaq6p7cb2qfzjfqcaba2wgkh8lzjjrglw9"; depends=[Biobase CCP GSEABase PROMISE]; }; + CEMiTool = derive2 { name="CEMiTool"; version="1.18.1"; sha256="0w2y7wkz9r75jblh5mvx096lxlsbx8hn0jp85sfqhnq6ngvil99a"; depends=[clusterProfiler data_table dplyr DT fastcluster fgsea ggdendro ggplot2 ggpmisc ggrepel ggthemes gridExtra gtable htmltools igraph intergraph knitr matrixStats network pracma rmarkdown scales sna stringr WGCNA]; }; + CFAssay = derive2 { name="CFAssay"; version="1.28.0"; sha256="1d38qqfj8dsvgqmwa2krffmvhg12h86jiml8w14my5bfsq1yikli"; depends=[]; }; + CGEN = derive2 { name="CGEN"; version="3.30.0"; sha256="1j1swi2c8wscq022fsjj8f1nqqfbgwpv2jm4dg3djd7zdvp71718"; depends=[mvtnorm survival]; }; + CGHbase = derive2 { name="CGHbase"; version="1.54.0"; sha256="1kfxw126bddfy67cmf8dca9qq4bg7fkxjf8iaikplhvs5hl7bp4d"; depends=[Biobase marray]; }; + CGHcall = derive2 { name="CGHcall"; version="2.56.0"; sha256="1r4y8zakgmdbnpwgp14kwh4iwqgqcmjq2yg4nc7j37p09bw1c8zr"; depends=[Biobase CGHbase DNAcopy impute snowfall]; }; + CGHnormaliter = derive2 { name="CGHnormaliter"; version="1.48.0"; sha256="1zz4iaxyf5b03xalq58idnkrwcpsvh8zlz6hlxz487caw7c8xx6p"; depends=[Biobase CGHbase CGHcall]; }; + CGHregions = derive2 { name="CGHregions"; version="1.52.0"; sha256="1g337b6fjmbbkpn9pw20z6bvacrlfh582n6lss3qw0s6x6w5cygs"; depends=[Biobase CGHbase]; }; + CHETAH = derive2 { name="CHETAH"; version="1.9.0"; sha256="1nfz8zpkrghfh942cr8xwvrj0d47h1nbf3nv534mp7rii38v07j3"; depends=[bioDist corrplot cowplot dendextend ggplot2 gplots pheatmap plotly reshape2 S4Vectors shiny SingleCellExperiment SummarizedExperiment]; }; + CHRONOS = derive2 { name="CHRONOS"; version="1.22.0"; sha256="18fdvbdbl0rms1fs27yi6lvf3xnn3pjfm1qngaaz4c06v207mg9w"; depends=[biomaRt circlize doParallel foreach graph igraph openxlsx RBGL RCurl rJava XML]; }; + CIMICE = derive2 { name="CIMICE"; version="1.2.0"; sha256="0d2sglrp8ansh8nibbqyg3pvhaaw33q5mzci382pwky05mpy9sjk"; depends=[assertthat dplyr ggcorrplot ggplot2 ggraph glue igraph maftools Matrix networkD3 purrr relations tidyr visNetwork]; }; + CINdex = derive2 { name="CINdex"; version="1.22.0"; sha256="0a73rdhmsprbbq69yvnnhgp86wic255yxrj82k1i1k62f3bsi74c"; depends=[bitops dplyr GenomeInfoDb GenomicRanges gplots gridExtra IRanges png S4Vectors som stringr]; }; + CMA = derive2 { name="CMA"; version="1.52.0"; sha256="09w0wj2mars83rfws8k6fpfgkbyp7fw97zfcf6d8lbsza639f3cm"; depends=[Biobase]; }; + CNAnorm = derive2 { name="CNAnorm"; version="1.40.0"; sha256="0nrkqycsssrrsf8h2w2wgi4lfyjlqakjx1iacb754pp2jfsr2nl2"; depends=[DNAcopy]; }; + CNEr = derive2 { name="CNEr"; version="1.30.0"; sha256="0w4iqmyyhsb6l9bi8c6qwdh4j6z2i1i5fi85ia9069fpl9d0hpl2"; depends=[annotate BiocGenerics Biostrings DBI GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 GO_db IRanges KEGGREST poweRlaw R_utils readr reshape2 RSQLite rtracklayer S4Vectors XVector]; }; + CNORdt = derive2 { name="CNORdt"; version="1.36.0"; sha256="0hw6axs0q22q2amh3v1l5sx60a9spcj9a8y2p6y76p6630zw8l2g"; depends=[abind CellNOptR]; }; + CNORfeeder = derive2 { name="CNORfeeder"; version="1.34.0"; sha256="0qgg6gii5m7vcyfykj1a1cra93nr6d1hvaiw1y051rdd4xsvjnwj"; depends=[CellNOptR graph]; }; + CNORfuzzy = derive2 { name="CNORfuzzy"; version="1.36.0"; sha256="0f7n5ib0smcxxcs38qq0s5m8z1bd13rnmhlwzg5wqgf5ymy7k9m1"; depends=[CellNOptR nloptr]; }; + CNORode = derive2 { name="CNORode"; version="1.36.0"; sha256="11l8lw4i8n71ki2fl218wpf7imsxpamxx9abj2axwi467cziq55x"; depends=[CellNOptR genalg]; }; + CNTools = derive2 { name="CNTools"; version="1.50.0"; sha256="198mvxz8zm32mvnq825iivzc8z1ff187g40kb867ck4svn1mysf6"; depends=[genefilter]; }; + CNVPanelizer = derive2 { name="CNVPanelizer"; version="1.26.0"; sha256="0v4abknw96zrvir2g676kh81l5jhbxwb10xymzcn1bk3l9vknnpm"; depends=[BiocGenerics exomeCopy foreach GenomeInfoDb GenomicRanges ggplot2 gplots IRanges NOISeq openxlsx plyr reshape2 Rsamtools S4Vectors shiny shinyFiles shinyjs stringr testthat]; }; + CNVRanger = derive2 { name="CNVRanger"; version="1.10.0"; sha256="0pqzs7268c17nh2i6hmg630wfpks2ixyp122iakyl0hxvxd0v2w7"; depends=[BiocGenerics BiocParallel data_table edgeR GDSArray gdsfmt GenomeInfoDb GenomicRanges IRanges lattice limma plyr qqman RaggedExperiment rappdirs reshape2 S4Vectors SNPRelate SummarizedExperiment]; }; + CNVfilteR = derive2 { name="CNVfilteR"; version="1.8.0"; sha256="0ap1k0aikfynwbynwd19l2nkj48d9h86smm7vrrfr1chrmglv84k"; depends=[assertthat Biostrings CopyNumberPlots GenomeInfoDb GenomicRanges IRanges karyoploteR pracma regioneR Rsamtools SummarizedExperiment VariantAnnotation]; }; + CNVgears = derive2 { name="CNVgears"; version="1.2.0"; sha256="1vswa2vyxknykims3cgwhbx9v0cw5978639bpgf7d7mwk63h6k6c"; depends=[data_table ggplot2]; }; + CNViz = derive2 { name="CNViz"; version="1.2.0"; sha256="08273c1jwrxcg4xyh6z7aqsy0sgk4ds8jzg8d8dxwscpfjjdbdcp"; depends=[CopyNumberPlots dplyr DT GenomicRanges karyoploteR magrittr plotly scales shiny]; }; + CNVrd2 = derive2 { name="CNVrd2"; version="1.32.0"; sha256="0kbncmpb8fmfciw5bjl7ng4cxzxl6ihjssg1zsdzkkiq4cxi9x1m"; depends=[DNAcopy ggplot2 gridExtra IRanges rjags Rsamtools VariantAnnotation]; }; + COCOA = derive2 { name="COCOA"; version="2.8.0"; sha256="10ij138g73pd56cxbvf4384xbvv9zija3rs7dpz82n80gwavbm87"; depends=[Biobase BiocGenerics ComplexHeatmap data_table fitdistrplus GenomicRanges ggplot2 IRanges MIRA S4Vectors simpleCache tidyr]; }; + CODEX = derive2 { name="CODEX"; version="1.26.0"; sha256="1mafncizgyff8gv1asxcrcv4y5chcfabg8payp4dlmixbxkdy971"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb IRanges Rsamtools S4Vectors]; }; + COHCAP = derive2 { name="COHCAP"; version="1.40.0"; sha256="0sz3haz6caqlgjzadmpfwbjk5qin7f7jh4ysm0zyga6wpvym6gmz"; depends=[BH COHCAPanno gplots RColorBrewer Rcpp RcppArmadillo WriteXLS]; }; + COMPASS = derive2 { name="COMPASS"; version="1.32.0"; sha256="16ijdi9axr0kr68mk881w2qiih44771312pribxzwsnvs4nvkahc"; depends=[abind BiocStyle clue coda data_table dplyr foreach knitr magrittr pdist plyr RColorBrewer Rcpp reshape2 rlang rmarkdown scales tidyr]; }; + CONFESS = derive2 { name="CONFESS"; version="1.22.0"; sha256="00mrmxlhf58vas7syr72w9nki4zq8xw0f2zfhw9l0lx59z06yhwz"; depends=[changepoint cluster contrast data_table EBImage ecp flexmix flowClust flowCore flowMeans flowMerge flowPeaks foreach ggplot2 limma MASS moments outliers plotrix raster readbitmap reshape2 SamSPECTRAL waveslim wavethresh zoo]; }; + CONSTANd = derive2 { name="CONSTANd"; version="1.2.0"; sha256="0i0fqzmxcx8gpyd2i1i9ma69qm57r1pj15jir37wh1jgjgqjk1rf"; depends=[]; }; + CORREP = derive2 { name="CORREP"; version="1.60.0"; sha256="0vhhs19bsdg9f2qjmmqyrxfwh0fd54y3m6fkz6anf3mvbs5zqyiw"; depends=[e1071]; }; + COSNet = derive2 { name="COSNet"; version="1.28.0"; sha256="06pzkyarm2fmiwj3s31svyciiwfi1x5yq2889vbqffbfpqfysa1f"; depends=[]; }; + CRISPRseek = derive2 { name="CRISPRseek"; version="1.34.0"; sha256="05dkhm8afbqa8zxgbxpz4vysj25p5wwi7jz21p3k5wp96w0zv7p7"; depends=[BiocGenerics Biostrings BSgenome data_table DelayedArray dplyr GenomeInfoDb GenomicRanges hash IRanges keras mltools reticulate rhdf5 S4Vectors seqinr XVector]; }; + CRImage = derive2 { name="CRImage"; version="1.42.0"; sha256="1r03i15rkz2j1g3z69m5p14vp7p2h9d1aikj2z4zvv661dk1gvqd"; depends=[aCGH DNAcopy e1071 EBImage foreach MASS sgeostat]; }; + CSAR = derive2 { name="CSAR"; version="1.46.0"; sha256="0xqs5ryxazq4naqknm4f2w6vlb4mkmcd5i6530dr5awml1rf458x"; depends=[GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + CSSP = derive2 { name="CSSP"; version="1.32.0"; sha256="06s5q9iq35lbmjw3x1vh5d0zxlwhkdfqa6hk3yl5l77hwwvbwfm4"; depends=[]; }; + CSSQ = derive2 { name="CSSQ"; version="1.6.0"; sha256="0f3aivrh7jazs67r78lgkqdmv8k06ny0pwvjnzxwn8zvf4mkbw0n"; depends=[GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; + CTDquerier = derive2 { name="CTDquerier"; version="2.2.0"; sha256="0pkcxbvlik0mh8c551zaqbq1hzlaivr4icsqnqnfisgrj3z6i0vv"; depends=[BiocFileCache ggplot2 gridExtra igraph RCurl S4Vectors stringdist stringr]; }; + CancerInSilico = derive2 { name="CancerInSilico"; version="2.14.0"; sha256="16bsfi5alh0sa42bqigbdv9xs97yjfrrhxbpi16fx9ah55brgjbc"; depends=[BH Rcpp]; }; + CancerSubtypes = derive2 { name="CancerSubtypes"; version="1.20.0"; sha256="0hr9883yfghnv7san896sivlryd5da911s7cyngk5xajlhlq1yn7"; depends=[cluster ConsensusClusterPlus iCluster impute limma NMF sigclust survival]; }; + Cardinal = derive2 { name="Cardinal"; version="2.12.0"; sha256="1mlc41jnqwb4dwpjlp4djif4wmbby03g0g1fz0f2lp6ava5axfzs"; depends=[Biobase BiocGenerics BiocParallel dplyr EBImage irlba lattice magrittr Matrix matter mclust nlme ProtGenerics S4Vectors signal sp viridisLite]; }; + Category = derive2 { name="Category"; version="2.60.0"; sha256="164zp4la9rqnp5vpn2y2p6plc5yxyk2kmn0z3d2flla54zc1b427"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI genefilter graph GSEABase Matrix RBGL]; }; + CausalR = derive2 { name="CausalR"; version="1.26.0"; sha256="1q8xr6nl6ynnk2n6s1cljnl8r47b04my8k2j20sn87d13fkc6m3k"; depends=[igraph]; }; + CeTF = derive2 { name="CeTF"; version="1.6.0"; sha256="0927nf56lwpciczmap02n2bp007yf3yd10hndcp9kgn7y61pk5ym"; depends=[circlize clusterProfiler ComplexHeatmap DESeq2 dplyr GenomicTools GenomicTools_fileHandler GGally ggnetwork ggplot2 ggpubr ggrepel igraph Matrix network Rcpp RcppArmadillo RCy3 S4Vectors SummarizedExperiment]; }; + CellBarcode = derive2 { name="CellBarcode"; version="1.0.0"; sha256="19i37q7d1j8wgyyiaivss1adf203c9yjz3czvdam0d2g7bhvp0zd"; depends=[Biostrings Ckmeans_1d_dp data_table egg ggplot2 magrittr plyr Rcpp S4Vectors ShortRead stringr]; }; + CellBench = derive2 { name="CellBench"; version="1.10.0"; sha256="18f6by5i8avj3lx5h1k5c7mwwgnri22r4b0jkd56ry01iz2wci6x"; depends=[BiocFileCache BiocGenerics BiocParallel dplyr glue lubridate magrittr memoise purrr rappdirs rlang SingleCellExperiment tibble tidyr tidyselect]; }; + CellMapper = derive2 { name="CellMapper"; version="1.20.0"; sha256="11q6b6m4lq4bxq62lgyxb0qp4s1yzvzajn9g0hiy02zisz5k47cz"; depends=[S4Vectors]; }; + CellMixS = derive2 { name="CellMixS"; version="1.10.0"; sha256="032p10pnb81qrspsj5c1wiaw9vzqnhx6whd10ayz6d0am9ifjf9s"; depends=[BiocGenerics BiocNeighbors BiocParallel cowplot dplyr ggplot2 ggridges kSamples magrittr purrr scater SingleCellExperiment SummarizedExperiment tidyr viridis]; }; + CellNOptR = derive2 { name="CellNOptR"; version="1.40.0"; sha256="0bqcrpz3jqsn383b2jqhd7kmf860ywdm3qjhrf4nywpyc0j9f3iq"; depends=[ggplot2 graph hash igraph RBGL RCurl Rgraphviz stringi stringr XML]; }; + CellScore = derive2 { name="CellScore"; version="1.14.0"; sha256="17zs6y08z1l4s51ishb5cp2k70yc1cinh211r76mrdlpdp9rxx5c"; depends=[Biobase gplots lsa RColorBrewer squash]; }; + CellTrails = derive2 { name="CellTrails"; version="1.12.0"; sha256="0rwirbvrfn03xrc0jjiw24dg9c49wznckhjm9kibd10n135x6l4g"; depends=[Biobase BiocGenerics cba dendextend dtw EnvStats ggplot2 ggrepel igraph maptree mgcv reshape2 Rtsne SingleCellExperiment SummarizedExperiment]; }; + CellaRepertorium = derive2 { name="CellaRepertorium"; version="1.4.0"; sha256="1gqr12dbm1g2gz4ixx3r8f9as7m5nd0vcj0k3hsk9njs938lfzk4"; depends=[BiocGenerics Biostrings dplyr forcats Matrix progress purrr Rcpp reshape2 rlang S4Vectors stringr tibble tidyr]; }; + CelliD = derive2 { name="CelliD"; version="1.2.0"; sha256="06jdqxa38pjvx0z1yqmhghn6x3dkq0zinc84kvxs9ls81hi6h20l"; depends=[BiocParallel data_table fastmatch fgsea ggplot2 glue irlba Matrix matrixStats pbapply Rcpp RcppArmadillo reticulate Rtsne scater Seurat SingleCellExperiment stringr SummarizedExperiment tictoc umap]; }; + Cepo = derive2 { name="Cepo"; version="1.0.0"; sha256="091hbppf6jmsw7bh3m1xasf9vwh4xf6m6sgqrqi8hvvp37vb7k67"; depends=[BiocParallel DelayedArray DelayedMatrixStats ggplot2 GSEABase HDF5Array patchwork reshape2 rlang S4Vectors SingleCellExperiment SummarizedExperiment]; }; + CexoR = derive2 { name="CexoR"; version="1.32.0"; sha256="18x5qj2z4nxbgj0i7si0rk57hlqwxmmz97dvsfvbkw1akcw8psb9"; depends=[genomation GenomeInfoDb GenomicRanges idr IRanges RColorBrewer Rsamtools rtracklayer S4Vectors]; }; + ChAMP = derive2 { name="ChAMP"; version="2.24.0"; sha256="10wyfcc36qfcwpzgsj2vnmjy694igk81zd35aij51fs4s1mhmf2k"; depends=[bumphunter ChAMPdata combinat dendextend DMRcate DNAcopy doParallel DT GenomicRanges ggplot2 globaltest goseq Hmisc Illumina450ProbeVariants_db IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b4_hg19 IlluminaHumanMethylationEPICmanifest illuminaio impute isva kpmt limma marray matrixStats minfi missMethyl plotly plyr preprocessCore prettydoc quadprog qvalue RColorBrewer rmarkdown RPMM shiny shinythemes sva wateRmelon]; }; + ChIC = derive2 { name="ChIC"; version="1.14.0"; sha256="0dd2qm6ab46yq7l4ai3q2bqsnb2kmg6la4lyf1wz3pbvrpfhb5py"; depends=[BiocGenerics caret caTools ChIC_data genomeIntervals GenomicRanges IRanges progress randomForest Rsamtools S4Vectors spp]; }; + ChIPComp = derive2 { name="ChIPComp"; version="1.24.0"; sha256="1wdy92y5l3wa3zgg59w69rd7gdwf4z1waa4i2cccniccz463p1xq"; depends=[BiocGenerics BSgenome_Hsapiens_UCSC_hg19 BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicRanges IRanges limma Rsamtools rtracklayer S4Vectors]; }; + ChIPQC = derive2 { name="ChIPQC"; version="1.30.0"; sha256="1vzrdlli9702m69qipj7gxbjvbycbr7s09gh4jas6apycprg9jw3"; depends=[Biobase BiocGenerics BiocParallel chipseq DiffBind GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gtools IRanges Nozzle_R1 reshape2 Rsamtools S4Vectors TxDb_Celegans_UCSC_ce6_ensGene TxDb_Dmelanogaster_UCSC_dm3_ensGene TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene TxDb_Rnorvegicus_UCSC_rn4_ensGene]; }; + ChIPXpress = derive2 { name="ChIPXpress"; version="1.38.0"; sha256="1wypkh9pq3v9lwmhwdrnf6a2jm2i2nc7kv9nppcyknf9qhpkn97z"; depends=[affy biganalytics bigmemory Biobase ChIPXpressData frma GEOquery]; }; + ChIPanalyser = derive2 { name="ChIPanalyser"; version="1.16.0"; sha256="1ibbfsl2gz5634rljy4bin9h9g5bxzig3z65bvayp4ldmfiz91dm"; depends=[BiocManager Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges RcppRoll ROCR rtracklayer S4Vectors]; }; + ChIPexoQual = derive2 { name="ChIPexoQual"; version="1.18.0"; sha256="1hh3mhfcngyx7cpzns8mjqviy8vfzrvxpv6nyizflpfmsr39mxfk"; depends=[BiocParallel biovizBase broom data_table dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 hexbin IRanges RColorBrewer rmarkdown Rsamtools S4Vectors scales viridis]; }; + ChIPpeakAnno = derive2 { name="ChIPpeakAnno"; version="3.28.0"; sha256="05fbq8zvww1nlyykrri0hf4248i1i7w5cr453giagmjq7lgg4v3b"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings DBI dplyr ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 graph InteractionSet IRanges KEGGREST matrixStats multtest RBGL regioneR Rsamtools rtracklayer S4Vectors SummarizedExperiment VennDiagram]; }; + ChIPseeker = derive2 { name="ChIPseeker"; version="1.30.0"; sha256="1x8px8ylc231g87rd48kmy9y36h26rldbmqjkcj4mgaldvbsj0rp"; depends=[AnnotationDbi BiocGenerics boot dplyr enrichplot GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gplots gtools IRanges magrittr plotrix RColorBrewer rtracklayer S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene]; }; + ChIPseqR = derive2 { name="ChIPseqR"; version="1.48.0"; sha256="05hxxqmjxpry0j80kyz2400azni0dc64ps7cxfi11h243japhbsf"; depends=[BiocGenerics Biostrings fBasics GenomicRanges HilbertVis IRanges S4Vectors ShortRead timsac]; }; + ChIPsim = derive2 { name="ChIPsim"; version="1.48.0"; sha256="1pdsfsk8c92pz22qz2x5rsmk7j9v3dw9c1p96il533ycjafq1xqd"; depends=[Biostrings IRanges ShortRead XVector]; }; + ChemmineOB = derive2 { name="ChemmineOB"; version="1.32.0"; sha256="14zwckgg8wqcdjmdk3i8p7f82df4izipq2lfck98l4i0z2p3y0f3"; depends=[BH BiocGenerics Rcpp zlibbioc]; }; + ChemmineR = derive2 { name="ChemmineR"; version="3.46.0"; sha256="069xd7if7fs69afmamgl6wrkzpnk97ic6z5ix4vvlzkb078dm0p8"; depends=[base64enc BH BiocGenerics DBI digest DT ggplot2 gridExtra jsonlite png Rcpp RCurl rjson rsvg stringi]; }; + Chicago = derive2 { name="Chicago"; version="1.22.0"; sha256="0nz9v37p7zl8yw3ykdbsb3izcwgx349wvrhwfyyn9h3jxjfafngn"; depends=[data_table Delaporte Hmisc MASS matrixStats]; }; + ChromHeatMap = derive2 { name="ChromHeatMap"; version="1.48.0"; sha256="08wvxxk59zfaclxzbmdm0bld586f76571qqh0jb0dgqw7cg6p0lf"; depends=[annotate AnnotationDbi Biobase BiocGenerics GenomicRanges IRanges rtracklayer]; }; + ChromSCape = derive2 { name="ChromSCape"; version="1.4.0"; sha256="1cpbbzm3lhp1qmirj3j1f2crrbfwap6krrvqshv742qgc1wsg7xb"; depends=[batchelor BiocParallel colorRamps colourpicker ConsensusClusterPlus coop DelayedArray dplyr DT edgeR forcats fs GenomicRanges ggplot2 IRanges irlba jsonlite kableExtra Matrix matrixTests msigdbr plotly qs qualV Rcpp rlist Rsamtools rtracklayer Rtsne S4Vectors scater scran shiny shinycssloaders shinydashboard shinydashboardPlus shinyFiles shinyhelper shinyjs shinyWidgets SingleCellExperiment stringdist SummarizedExperiment Sushi tibble tidyr umap viridis]; }; + CiteFuse = derive2 { name="CiteFuse"; version="1.6.0"; sha256="09bkzccl4ncbrcblr6harih2s2y69r6237hvwxlq7yfz1im9sj46"; depends=[cowplot dbscan ggplot2 ggraph ggridges gridExtra igraph Matrix mixtools pheatmap propr randomForest reshape2 rhdf5 rlang Rtsne S4Vectors scales scran SingleCellExperiment SummarizedExperiment uwot]; }; + ClassifyR = derive2 { name="ClassifyR"; version="2.14.0"; sha256="18syv3r0wm6w1pmab8pgnc83sx7rafjvbn3v4889mhii09x6kk53"; depends=[BiocParallel locfit MultiAssayExperiment plyr S4Vectors]; }; + Clomial = derive2 { name="Clomial"; version="1.30.0"; sha256="0d2vqxd2xyis5wrjb3apss262wriijqi95arga4aj1d8x523zr17"; depends=[matrixStats permute]; }; + Clonality = derive2 { name="Clonality"; version="1.42.0"; sha256="17560pvdykdvzfqnb3i1qqnlvrsd2ahan6ar8ys49y3p9xrjrd4i"; depends=[DNAcopy]; }; + CluMSID = derive2 { name="CluMSID"; version="1.10.0"; sha256="14vv63b9nlii3hhgzyl4mqnxln85rw1m8cb37ilrg1yg2swmvv97"; depends=[ape Biobase dbscan GGally ggplot2 gplots MSnbase mzR network plotly RColorBrewer S4Vectors sna]; }; + ClusterJudge = derive2 { name="ClusterJudge"; version="1.16.0"; sha256="0dpmf5s4gxv8vn33xrinmhwbgn4417zdqysv9pqhdzjqxwxcn6qv"; depends=[httr infotheo jsonlite lattice latticeExtra]; }; + ClusterSignificance = derive2 { name="ClusterSignificance"; version="1.22.0"; sha256="0kfq4s84b54f9hjhix0f9w3bn12a9s253n1k4aj30s4hjzcy180d"; depends=[pracma princurve RColorBrewer scatterplot3d]; }; + CoCiteStats = derive2 { name="CoCiteStats"; version="1.66.0"; sha256="1di153w94mqq03w6l2pri6zsv67x8h5z5xnswwxbyz3693902m82"; depends=[AnnotationDbi org_Hs_eg_db]; }; + CoGAPS = derive2 { name="CoGAPS"; version="3.14.0"; sha256="1ykp7jmnc32j2s0gf0l1xpk5kpfwqffq2526l8vjqia67zacgmdd"; depends=[BH BiocParallel cluster gplots RColorBrewer Rcpp rhdf5 S4Vectors SingleCellExperiment SummarizedExperiment]; }; + CoRegNet = derive2 { name="CoRegNet"; version="1.32.0"; sha256="1nwx7mdlqncswfilwpxplpfmy2lkdhq1d8p23jw1dd194w346y7l"; depends=[arules igraph shiny]; }; + Cogito = derive2 { name="Cogito"; version="1.0.0"; sha256="0chzlwlv0sjyd4m52m9w4y79lpmc6xrlj29l2kyv3kj1qzwqgfdg"; depends=[AnnotationDbi BiocManager entropy GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 jsonlite magrittr rmarkdown S4Vectors TxDb_Mmusculus_UCSC_mm9_knownGene]; }; + ComPrAn = derive2 { name="ComPrAn"; version="1.2.0"; sha256="0sqy9118gg0hicdi15idi65g95ni67zwpq9frbdp6jyz4564i2np"; depends=[data_table dplyr DT forcats ggplot2 magrittr purrr RColorBrewer rio rlang scales shiny shinydashboard shinyjs stringr tibble tidyr VennDiagram]; }; + ComplexHeatmap = derive2 { name="ComplexHeatmap"; version="2.10.0"; sha256="124w74mk0zk035wyr7cimblzx5blags4n5c8f83mp7iimxcb4gcn"; depends=[circlize clue colorspace digest doParallel foreach GetoptLong GlobalOptions IRanges matrixStats png RColorBrewer]; }; + ConsensusClusterPlus = derive2 { name="ConsensusClusterPlus"; version="1.58.0"; sha256="13z43qbk9z7mvy8v8k185m6n020i6ahb18pm4q88rs75qlklzdkr"; depends=[ALL Biobase cluster]; }; + CopyNumberPlots = derive2 { name="CopyNumberPlots"; version="1.10.0"; sha256="02zp86818c0n4wjwsw4xpcw5nxvdjpijg9gczmrr87jzkd6lwf8x"; depends=[cn_mops GenomeInfoDb GenomicRanges IRanges karyoploteR regioneR rhdf5 Rsamtools SummarizedExperiment VariantAnnotation]; }; + CopywriteR = derive2 { name="CopywriteR"; version="2.26.0"; sha256="0xm5gjzi4r1xzyn7r669blqxhyhmbk9rh9k2gn696j14hbhc1hcy"; depends=[BiocParallel chipseq CopyhelpeR data_table DNAcopy futile_logger GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges matrixStats Rsamtools S4Vectors]; }; + CoreGx = derive2 { name="CoreGx"; version="1.6.0"; sha256="12825lplihp10wvvg90gkk96vabvycfi32kpbs2garbzcjshqygh"; depends=[Biobase BiocGenerics BiocParallel BumpyMatrix checkmate crayon data_table glue lsa MatrixGenerics MultiAssayExperiment piano rlang S4Vectors SummarizedExperiment]; }; + Cormotif = derive2 { name="Cormotif"; version="1.40.0"; sha256="1dzsnfgrgjgjk9a1jbsjfarcjvxnvswph495lcaiw8fh5mibf9qb"; depends=[affy limma]; }; + CountClust = derive2 { name="CountClust"; version="1.21.0"; sha256="17px9jkpjwz0j2f5h8xv52wh24ilqvlb6dvczjc36lb7mq4cw3sq"; depends=[cowplot flexmix ggplot2 gtools limma maptpx picante plyr reshape2 slam SQUAREM]; }; + CoverageView = derive2 { name="CoverageView"; version="1.32.0"; sha256="0sb1h5qsk41c9xisq73agqh502wv6p2j1k45s32a4bkdynf696as"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; }; + CrispRVariants = derive2 { name="CrispRVariants"; version="1.22.0"; sha256="0jvrsc0fz8li8v6xigvkq514x0pirnbrp7lgvjqxxj8i3l7y536i"; depends=[AnnotationDbi BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges reshape2 Rsamtools S4Vectors]; }; + CyTOFpower = derive2 { name="CyTOFpower"; version="1.0.0"; sha256="1h2dmnkjv62ws7ljixq1nj50hnqk3r70xhzkh159cjkirf9r4xwn"; depends=[CytoGLMM diffcyt dplyr DT ggplot2 magrittr rlang shiny shinyFeedback shinyjs shinyMatrix SummarizedExperiment tibble tidyr]; }; + CytoDx = derive2 { name="CytoDx"; version="1.14.0"; sha256="1wrfcmg0prz5qywalrzyql08aw2rglkz14fn6j670av40yblskhv"; depends=[doParallel dplyr flowCore glmnet rpart rpart_plot]; }; + CytoGLMM = derive2 { name="CytoGLMM"; version="1.2.0"; sha256="0q5d86kx16nlsckp3zmh6j1irn0l8y40lx17pp99n32mzi9b7c02"; depends=[BiocParallel caret cowplot doParallel dplyr factoextra flexmix ggplot2 ggrepel logging magrittr MASS Matrix mbest pheatmap RColorBrewer rlang speedglm stringr strucchange tibble tidyr]; }; + CytoML = derive2 { name="CytoML"; version="2.6.0"; sha256="16rgsc2dz5b8lm3ma8nh9wiknrdnvfjcsij7809rmcfs0gn1arcz"; depends=[base64enc BH Biobase corpcor cytolib data_table dplyr flowCore flowWorkspace ggcyto graph jsonlite lattice openCyto plyr RBGL Rcpp RcppArmadillo RcppParallel Rgraphviz Rhdf5lib RProtoBufLib RUnit tibble XML xml2 yaml]; }; + CytoTree = derive2 { name="CytoTree"; version="1.3.0"; sha256="1nb17lhpzzqd3xvs4ccdc5kcm4jvgk7w66nyv3vd8s68d7cf9rnp"; depends=[Biobase BiocNeighbors cluster flowCore FlowSOM flowUtils ggplot2 gmodels igraph limma Matrix matrixStats mclust pheatmap prettydoc RANN Rcpp Rtsne scatterpie scatterplot3d stringr sva umap]; }; + DAMEfinder = derive2 { name="DAMEfinder"; version="1.6.0"; sha256="0g47m8ac1rgllhfcbss0200m5jcrasns15x03db601m1jy37mcj8"; depends=[BiocGenerics Biostrings bumphunter cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges limma plyr readr reshape2 Rsamtools S4Vectors stringr SummarizedExperiment VariantAnnotation]; }; + DAPAR = derive2 { name="DAPAR"; version="1.26.0"; sha256="071dkv6x979wyl214wjllkacvs6izjwjkcxvqpzk9gwzlrs8h0hg"; depends=[AnnotationDbi apcluster Biobase Cairo cluster clusterProfiler cp4p DAPARdata dendextend diptest doParallel dplyr factoextra FactoMineR forcats foreach ggplot2 gplots graph highcharter igraph imp4p impute knitr lattice limma lme4 Matrix Mfuzz MSnbase multcomp norm openxlsx pcaMethods png preprocessCore purrr RColorBrewer readxl reshape2 scales siggenes stringr tibble tidyr tidyverse tmvtnorm vioplot visNetwork vsn]; }; + DART = derive2 { name="DART"; version="1.42.0"; sha256="1wxg3szgsqy33z4vp150w5kg2nxyxqs3az5vxbajz5z9q7fg3zrb"; depends=[igraph]; }; + DECIPHER = derive2 { name="DECIPHER"; version="2.22.0"; sha256="0a9k3f70jmd17kxf1zjmdzrfjs0dmwfad2zgz6wihxh5s1shc8qm"; depends=[Biostrings DBI IRanges RSQLite S4Vectors XVector]; }; + DEComplexDisease = derive2 { name="DEComplexDisease"; version="1.14.0"; sha256="0qbmw70rqmfixrbnb2jzvvqi54j2rl6gy1bspb143gsadh8z2s9i"; depends=[BiocParallel ComplexHeatmap DESeq2 edgeR Rcpp SummarizedExperiment]; }; + DEFormats = derive2 { name="DEFormats"; version="1.22.0"; sha256="0c9ajkrjzw3rdnfnjj7xn9pdsykdzn230mi01138srrkvcpra856"; depends=[checkmate data_table DESeq2 edgeR GenomicRanges S4Vectors SummarizedExperiment]; }; + DEGraph = derive2 { name="DEGraph"; version="1.46.0"; sha256="1p8zzx8vbzhxnpvd7cbr4g1r87lys41cx4n60rkx53c0pqlnabsn"; depends=[graph KEGGgraph lattice mvtnorm NCIgraph R_methodsS3 R_utils RBGL Rgraphviz rrcov]; }; + DEGreport = derive2 { name="DEGreport"; version="1.30.0"; sha256="0zmqz8gvpbka5cnwxx7w00xjaxlhmrni1lvacnippy63lpl2w4sz"; depends=[Biobase BiocGenerics broom circlize cluster ComplexHeatmap ConsensusClusterPlus cowplot DESeq2 dplyr edgeR ggdendro ggplot2 ggrepel knitr lasso2 logging magrittr Nozzle_R1 psych RColorBrewer reshape rlang S4Vectors scales stringr SummarizedExperiment tibble tidyr]; }; + DEGseq = derive2 { name="DEGseq"; version="1.48.0"; sha256="1bx6xj71k7126ckpr1b7dh1ndmb9yvp9wrrr8lyfcq5birgpf22n"; depends=[qvalue]; }; + DEP = derive2 { name="DEP"; version="1.16.0"; sha256="122gxaslxl3q66ncqndkmnjf6kx2gkj880cf2khwivh58sg6y410"; depends=[assertthat circlize cluster ComplexHeatmap dplyr DT fdrtool ggplot2 ggrepel gridExtra imputeLCMD limma MSnbase purrr RColorBrewer readr rmarkdown shiny shinydashboard SummarizedExperiment tibble tidyr vsn]; }; + DEScan2 = derive2 { name="DEScan2"; version="1.14.0"; sha256="1nw1id97vnfmnj7249zh29176zjyh15lx1vbkcr6kxri4x115l4x"; depends=[BiocGenerics BiocParallel ChIPpeakAnno data_table DelayedArray GenomeInfoDb GenomicAlignments GenomicRanges glue IRanges plyr Rcpp RcppArmadillo rtracklayer S4Vectors SummarizedExperiment]; }; + DESeq2 = derive2 { name="DESeq2"; version="1.34.0"; sha256="0whk29zrmv9mrlc4w5ghy0fd29v8hfr8jccwgrn59mf3mkmfb2b9"; depends=[Biobase BiocGenerics BiocParallel genefilter geneplotter GenomicRanges ggplot2 IRanges locfit Rcpp RcppArmadillo S4Vectors SummarizedExperiment]; }; + DEWSeq = derive2 { name="DEWSeq"; version="1.8.0"; sha256="1ggj4in0sj9wb367s19v56f0jnfdcsylndjwpp4j02kwmc2wfl0j"; depends=[BiocGenerics BiocParallel data_table DESeq2 GenomeInfoDb GenomicRanges R_utils S4Vectors SummarizedExperiment]; }; + DEXSeq = derive2 { name="DEXSeq"; version="1.40.0"; sha256="1wd4bjd0a53s689yvb2lxzdiy0synh6ncfcly3cfw37kpdj8lds1"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel biomaRt DESeq2 genefilter geneplotter GenomicRanges hwriter IRanges RColorBrewer Rsamtools S4Vectors statmod stringr SummarizedExperiment]; }; + DEqMS = derive2 { name="DEqMS"; version="1.11.1"; sha256="0nm49sxxi0j4czly8rjyxp41wlcihbn802qmljs8x6y6wvp3464l"; depends=[ggplot2 limma matrixStats]; }; + DEsingle = derive2 { name="DEsingle"; version="1.14.0"; sha256="0x0xnylf036k320r59pqa273i59jcwxiwsw4fyfqqrliyw7fxa4c"; depends=[bbmle BiocParallel gamlss MASS Matrix maxLik pscl VGAM]; }; + DEsubs = derive2 { name="DEsubs"; version="1.20.0"; sha256="1b11hhs7r1r24z7w9mimj1bpj7y5j7i9vq9sw6ll2dlghyazc7di"; depends=[circlize DESeq2 EBSeq edgeR ggplot2 graph igraph jsonlite limma locfit Matrix NBPSeq pheatmap RBGL]; }; + DExMA = derive2 { name="DExMA"; version="1.2.0"; sha256="0z8la638q8jij95bnyfrrjhv4abda5f3shr9jwg7g21kr3dx20rf"; depends=[Biobase DExMAdata GEOquery impute limma pheatmap plyr scales snpStats sva swamp]; }; + DFP = derive2 { name="DFP"; version="1.52.0"; sha256="1b3h4zsqp75ac6zq8yc73pila8khb57hlh5yj9md8kgxqcg4b447"; depends=[Biobase]; }; + DIAlignR = derive2 { name="DIAlignR"; version="2.2.0"; sha256="1py41l19brb2z7iv1fj9jkw213pn5aqwiq47bz4iha4jb42rdn64"; depends=[ape bit64 data_table DBI dplyr ggplot2 magrittr mzR phangorn pracma Rcpp RcppEigen reticulate rlang RMSNumpress RSQLite signal tidyr zoo]; }; + DMCFB = derive2 { name="DMCFB"; version="1.8.0"; sha256="03mg620cpn13avvd962akmjgd2d0ph7b7zgb22zcidsfk8q9znmh"; depends=[arm benchmarkme BiocParallel data_table fastDummies GenomicRanges IRanges MASS matrixStats rtracklayer S4Vectors speedglm SummarizedExperiment tibble]; }; + DMCHMM = derive2 { name="DMCHMM"; version="1.16.0"; sha256="0r12m3ldbi1h0fdg4hgxfq1f0lrz49a08i7kr6imdspzm8hl2j65"; depends=[BiocParallel calibrate fdrtool GenomicRanges IRanges multcomp rtracklayer S4Vectors SummarizedExperiment]; }; + DMRScan = derive2 { name="DMRScan"; version="1.16.0"; sha256="0iza3yyjmggkxgn24raiwzppf4lvdj1lgq34lpk08mf6p5v0v601"; depends=[GenomeInfoDb GenomicRanges IRanges MASS Matrix mvtnorm RcppRoll]; }; + DMRcaller = derive2 { name="DMRcaller"; version="1.26.0"; sha256="0qn3y2nj0pyy9kqpbv8nwsiypwl6kixxs2yj3bvhkhb5dgqj6p6w"; depends=[betareg GenomicRanges IRanges Rcpp RcppRoll S4Vectors]; }; + DMRcate = derive2 { name="DMRcate"; version="2.8.0"; sha256="07p1a4sbavh2c3qkxak3zfcgvjqy31wc30mvlx1k8v965dalfxyw"; depends=[bsseq DSS edgeR ExperimentHub GenomeInfoDb GenomicRanges Gviz IRanges limma minfi missMethyl plyr S4Vectors SummarizedExperiment]; }; + DMRforPairs = derive2 { name="DMRforPairs"; version="1.30.0"; sha256="1f8b63chg3jrqbf669l2nk3a8wy5rya545zbypgzr2r51s284k7b"; depends=[GenomicRanges Gviz R2HTML]; }; + DNABarcodeCompatibility = derive2 { name="DNABarcodeCompatibility"; version="1.10.0"; sha256="1dj4c8h648ckzrz0k6qrzvfgqz00wj0pdahhp35nlrldcavp90p6"; depends=[DNABarcodes dplyr numbers purrr stringr tidyr]; }; + DNABarcodes = derive2 { name="DNABarcodes"; version="1.24.0"; sha256="07yaz98r18mjny1ilmfnjxcra7xpklnd183pw0kasvsri01ccwxg"; depends=[BH Matrix Rcpp]; }; + DNAcopy = derive2 { name="DNAcopy"; version="1.68.0"; sha256="19ax431i97r49gh1232vf8mgmkvc6k26lnq44j3g10n6q01czswm"; depends=[]; }; + DNAshapeR = derive2 { name="DNAshapeR"; version="1.22.0"; sha256="1ypkp03ciia9hj4hhh9dlkx4hsrivph2y3irxhyqn7wjgh6fmnnl"; depends=[Biostrings fields GenomicRanges Rcpp]; }; + DOSE = derive2 { name="DOSE"; version="3.20.0"; sha256="0hj5hn54g8a3gj4q9200bffcy9m1mvkiwbg60ysv1hxxbpi57kmv"; depends=[AnnotationDbi BiocParallel DO_db fgsea ggplot2 GOSemSim qvalue reshape2]; }; + DRIMSeq = derive2 { name="DRIMSeq"; version="1.22.0"; sha256="0y2jb0hb633id038zmwnfny6h4ai77fdyy02f77vha1z8xg5nl02"; depends=[BiocGenerics BiocParallel edgeR GenomicRanges ggplot2 IRanges limma MASS reshape2 S4Vectors]; }; + DSS = derive2 { name="DSS"; version="2.42.0"; sha256="1a6igpkics6lyv7cqcg4iakxrwk928ha7xv7yvn0j2yi9h2akqmi"; depends=[Biobase BiocParallel bsseq DelayedArray]; }; + DTA = derive2 { name="DTA"; version="2.40.0"; sha256="195pmjs1yhlw241ha0v8jpd1fwmgd6pp6s8bhbhjinkwplinw2g1"; depends=[LSD scatterplot3d]; }; + DaMiRseq = derive2 { name="DaMiRseq"; version="2.6.0"; sha256="0wzbfa28f97hqgrp2514fpk8d3w0yxj0j5llpnvy19b7z0fxr43i"; depends=[arm caret corrplot DESeq2 e1071 EDASeq edgeR FactoMineR FSelector ggplot2 Hmisc ineq kknn limma lubridate MASS pheatmap pls plsVarSel plyr randomForest RColorBrewer reshape2 RSNNS SummarizedExperiment sva]; }; + DeMAND = derive2 { name="DeMAND"; version="1.24.0"; sha256="15k9m8rkrs7mhi07f26d6600k5aymrz19fdsg8078n3155bgl6mc"; depends=[KernSmooth]; }; + DeMixT = derive2 { name="DeMixT"; version="1.10.0"; sha256="0x3kjcn0878w36rqd808ca1iicv4dki1f8066s3ry7806dhcxiln"; depends=[base64enc ggplot2 KernSmooth knitr matrixcalc matrixStats Rcpp rmarkdown SummarizedExperiment truncdist]; }; + DeconRNASeq = derive2 { name="DeconRNASeq"; version="1.36.0"; sha256="1ax9lx5qg4k5c1mv35bhpfh9q8dbfbv4rf4y1vy994qxmnq4rwsv"; depends=[ggplot2 limSolve pcaMethods]; }; + DeepBlueR = derive2 { name="DeepBlueR"; version="1.20.0"; sha256="16sdsvmp54k6zj1xcxmq0pdpm91q9ff11p3c83ii30brshj69bhi"; depends=[data_table diffr dplyr filehash foreach GenomeInfoDb GenomicRanges R_utils RCurl rjson rtracklayer settings stringr withr XML]; }; + DeepPINCS = derive2 { name="DeepPINCS"; version="1.2.0"; sha256="0pw7bda7qa0sdj0yz2iazvxkrl2nqqvqx74i4czzfyp6q94j6r1k"; depends=[CatEncoders keras matlab PRROC purrr rcdk reticulate stringdist tensorflow tokenizers ttgsea webchem]; }; + DegNorm = derive2 { name="DegNorm"; version="1.4.0"; sha256="0f3vpynm5g83lpja5xg9nvpssyj6lh5cw9syg242j3mlrjim9bif"; depends=[data_table doParallel foreach GenomicAlignments GenomicFeatures GenomicRanges ggplot2 heatmaply IRanges plotly plyr Rcpp RcppArmadillo Rsamtools S4Vectors viridis]; }; + DelayedArray = derive2 { name="DelayedArray"; version="0.20.0"; sha256="1cm6zh01mvhiq7zrik7q3dmgxinyjz1nyg6rfj93kpkvcb5d4wpj"; depends=[BiocGenerics IRanges Matrix MatrixGenerics S4Vectors]; }; + DelayedDataFrame = derive2 { name="DelayedDataFrame"; version="1.10.0"; sha256="1vifbqka5k1rmimqcpl6218ragr9dq9rzxizx9nff5ilsva21f9b"; depends=[BiocGenerics DelayedArray S4Vectors]; }; + DelayedMatrixStats = derive2 { name="DelayedMatrixStats"; version="1.16.0"; sha256="1pqwkk39rfhcnhmgchk0gfmm4jgasl19yq0nhhwsfj45y2vk6kjk"; depends=[DelayedArray IRanges Matrix MatrixGenerics matrixStats S4Vectors sparseMatrixStats]; }; + DelayedRandomArray = derive2 { name="DelayedRandomArray"; version="1.2.0"; sha256="1hi9pvxny8nm4akhshicksd04p7vflqa3m38k6kcs50slhgdp5ys"; depends=[BH DelayedArray dqrng Rcpp]; }; + DelayedTensor = derive2 { name="DelayedTensor"; version="1.0.0"; sha256="0yg7r6j7r1sikc4wi6khh3dsbflzpj51sdh41q337lkmlxagwpbb"; depends=[BiocSingular DelayedArray DelayedRandomArray einsum HDF5Array irlba Matrix rTensor]; }; + DepecheR = derive2 { name="DepecheR"; version="1.10.0"; sha256="1500jivij7zdycdd0i0b7mgp44w4z0hqnpzqbq8nhvzzdigic8x9"; depends=[beanplot doSNOW dplyr FNN foreach ggplot2 gmodels gplots MASS matrixStats mixOmics moments Rcpp RcppEigen reshape2 robustbase viridis]; }; + DiffBind = derive2 { name="DiffBind"; version="3.4.0"; sha256="15p4jd9k520va6kzizkgsl4a18kh5r8i50qfdkv7xazsfhvxjm3i"; depends=[amap apeglm ashr BiocParallel DESeq2 dplyr GenomicAlignments GenomicRanges ggplot2 ggrepel gplots GreyListChIP IRanges lattice limma locfit RColorBrewer Rcpp Rhtslib Rsamtools S4Vectors SummarizedExperiment systemPipeR]; }; + DiffLogo = derive2 { name="DiffLogo"; version="2.18.0"; sha256="1axpyjr86a176rgv9wnrk04dv9llgkw9vr7h00scr6jw77wqya4n"; depends=[cba]; }; + Dino = derive2 { name="Dino"; version="1.0.0"; sha256="1k83rhva7bxk1w6qvvdhx0r95p9nbzfdm3m7g6wpyq3qp0ifx5xp"; depends=[BiocParallel BiocSingular Matrix matrixStats S4Vectors scran Seurat SingleCellExperiment SummarizedExperiment]; }; + Director = derive2 { name="Director"; version="1.20.0"; sha256="1f0a8rkpz698c5a41j7ii7ahxxaqn92rhx8sh3q66gpv0br8h44g"; depends=[htmltools]; }; + DirichletMultinomial = derive2 { name="DirichletMultinomial"; version="1.36.0"; sha256="06nallp9jj2vmaa7d18g6hiymjc109szdv8sp51r87n7s38bvyq6"; depends=[BiocGenerics IRanges S4Vectors]; }; + DiscoRhythm = derive2 { name="DiscoRhythm"; version="1.10.0"; sha256="1cb51c6bmvc1vgxih3sqcalbzhxn1b9ilf1q8j0ijwk7sxsdhy5l"; depends=[BiocGenerics BiocStyle broom data_table dplyr DT ggExtra ggplot2 gridExtra heatmaply kableExtra knitr magick matrixStats matrixTests MetaCycle plotly reshape2 rmarkdown S4Vectors shiny shinyBS shinycssloaders shinydashboard shinyjs SummarizedExperiment UpSetR VennDiagram viridis zip]; }; + DominoEffect = derive2 { name="DominoEffect"; version="1.14.0"; sha256="13lksli177d11rw5692bc5qmp0x5bfkasriccaa28hklnqmbyjsc"; depends=[AnnotationDbi biomaRt Biostrings data_table GenomeInfoDb GenomicRanges IRanges SummarizedExperiment VariantAnnotation]; }; + Doscheda = derive2 { name="Doscheda"; version="1.16.0"; sha256="0lpmxnid43fvi41mc5r89mvvxn19baja8f4zr38j3dkb126dr476"; depends=[affy calibrate corrgram drc DT ggplot2 gridExtra httr jsonlite limma matrixStats prodlim readxl reshape2 shiny shinydashboard stringr vsn]; }; + DriverNet = derive2 { name="DriverNet"; version="1.34.0"; sha256="1qfjg5x3m2z5yjm0lgnw7rqhclic2fgzcdnq0nnwlqyp4i5na10q"; depends=[]; }; + DropletUtils = derive2 { name="DropletUtils"; version="1.14.0"; sha256="1zi9pm0ns7w9ga9567rsbm35gyl4fpgic0fvsj5a9ppagqw7ag8z"; depends=[beachmat BH BiocGenerics BiocParallel DelayedArray DelayedMatrixStats dqrng edgeR HDF5Array Matrix R_utils Rcpp rhdf5 Rhdf5lib S4Vectors scuttle SingleCellExperiment SummarizedExperiment]; }; + DrugVsDisease = derive2 { name="DrugVsDisease"; version="2.36.0"; sha256="19plcigawh4c4z1dxn1c0kxbdnrsz2fgfyvmcnj0025xscdk4zay"; depends=[affy annotate ArrayExpress BiocGenerics biomaRt cMap2data DrugVsDiseasedata GEOquery hgu133a_db hgu133a2_db hgu133plus2_db limma qvalue RUnit xtable]; }; + Dune = derive2 { name="Dune"; version="1.6.0"; sha256="0n267fw1yna1fpg5gcilmf0ijavy2c1ry0wcccp2cdzhs77cx7fi"; depends=[aricode BiocParallel dplyr gganimate ggplot2 magrittr purrr RColorBrewer SummarizedExperiment tidyr]; }; + DynDoc = derive2 { name="DynDoc"; version="1.72.0"; sha256="1ix1kcjrmbv7hqsmihgazh7igrh13bxhgw36ibihh07sflrgf1hm"; depends=[]; }; + EBImage = derive2 { name="EBImage"; version="4.36.0"; sha256="030vpn55ppfqq4408c4db4w40d17x1yq6zajb11p2glikvm1q619"; depends=[abind BiocGenerics fftwtools htmltools htmlwidgets jpeg locfit png RCurl tiff]; }; + EBSEA = derive2 { name="EBSEA"; version="1.22.0"; sha256="0vzbc8kx00ylyi3qiz92njnbpaqadnabf97kd9l6kzxj0z8mfig2"; depends=[DESeq2 EmpiricalBrownsMethod]; }; + EBSeq = derive2 { name="EBSeq"; version="1.34.0"; sha256="1p8i04v5h6mbc8zqbf3rifbwwylzzc1fqrkhh0a0mbcgq2nv7i9m"; depends=[blockmodeling gplots testthat]; }; + EBSeqHMM = derive2 { name="EBSeqHMM"; version="1.28.0"; sha256="1q94fdaw9jaqvi3b3va80fgiinl0v58pyw8ja5mkm438yfmyzwhv"; depends=[EBSeq]; }; + EBarrays = derive2 { name="EBarrays"; version="2.58.0"; sha256="10dw6c93rmpknzf4cnhw3y7lb27q4xq7x7wirl2a7qywdj0yj2g6"; depends=[Biobase cluster lattice]; }; + EBcoexpress = derive2 { name="EBcoexpress"; version="1.38.0"; sha256="16l40i20ybkqjjvgifm4a0zini6jnrx3y5x6fj863kvxrh550hrb"; depends=[EBarrays mclust minqa]; }; + EDASeq = derive2 { name="EDASeq"; version="2.28.0"; sha256="1vygfdxbjcww7sqzc3j7sp7w13dx10vlzy9z31flf7345qp6blj7"; depends=[AnnotationDbi aroma_light Biobase BiocGenerics BiocManager biomaRt Biostrings GenomicFeatures GenomicRanges IRanges Rsamtools ShortRead]; }; + EGAD = derive2 { name="EGAD"; version="1.22.0"; sha256="1kr79qm5na04p0s31whd88zmrp9sy8qm1ypngpgxch628yf93l9a"; depends=[Biobase GEOquery gplots igraph impute limma MASS plyr RColorBrewer RCurl zoo]; }; + EGSEA = derive2 { name="EGSEA"; version="1.22.0"; sha256="17q0cjvkrqhmzcgvip4mkdz02aa9rm3svfv2s689fhz2kmwljca8"; depends=[AnnotationDbi Biobase DT edgeR EGSEAdata gage ggplot2 globaltest gplots GSVA HTMLUtils htmlwidgets hwriter limma metap org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db PADOG pathview plotly RColorBrewer safe stringi topGO]; }; + ELMER = derive2 { name="ELMER"; version="2.18.0"; sha256="0kn5yr9yf49kcipjn4z7bcpzj74kcfkhb8q9cfnx659xnksfb27d"; depends=[biomaRt circlize ComplexHeatmap DelayedArray doParallel downloader dplyr ELMER_data GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggpubr ggrepel gridExtra Gviz IRanges lattice magrittr Matrix MultiAssayExperiment plotly plyr progress purrr readr reshape reshape2 rmarkdown rtracklayer rvest S4Vectors scales stringr SummarizedExperiment TCGAbiolinks tibble tidyr xml2]; }; + EMDomics = derive2 { name="EMDomics"; version="2.24.0"; sha256="0rf83brhzdqsnwg3vlby0a4kf8khv2g7rmxkk31r44apkyspzapl"; depends=[BiocParallel CDFt emdist ggplot2 matrixStats preprocessCore]; }; + ENmix = derive2 { name="ENmix"; version="1.30.0"; sha256="1c20i0h00kj0fpc6ij7sm8hcfd41kfqb3l07pj3dpc93n2r3fr8s"; depends=[AnnotationHub Biobase doParallel dynamicTreeCut ExperimentHub foreach genefilter geneplotter gplots gtools illuminaio impute IRanges irr matrixStats minfi preprocessCore quadprog RPMM S4Vectors SummarizedExperiment]; }; + ERSSA = derive2 { name="ERSSA"; version="1.12.0"; sha256="11lak418vmswi9mz4h97pxb68m7ihqbg6z93bvnakka65w997ki8"; depends=[BiocParallel DESeq2 edgeR ggplot2 plyr RColorBrewer]; }; + EWCE = derive2 { name="EWCE"; version="1.2.0"; sha256="02kfcj2wldqfrkrlwss5k5vb5mgi37jrp2c3kx556k25xkzh19vq"; depends=[AnnotationHub biomaRt cowplot ewceData ExperimentHub future ggdendro ggplot2 gridExtra HGNChelper limma Matrix reshape2 RNOmni scales stringr SummarizedExperiment]; }; + EmpiricalBrownsMethod = derive2 { name="EmpiricalBrownsMethod"; version="1.22.0"; sha256="0yra1mp1iz4rh6dvlxv0i0f1ibqgl9giz3r4csg5l0wxz60fbxzm"; depends=[]; }; + EnMCB = derive2 { name="EnMCB"; version="1.6.0"; sha256="050mzns1zh643pxzqzc935hwczpk7xwa16qq7z88cagab2r8yx7j"; depends=[boot doParallel foreach ggplot2 glmnet IlluminaHumanMethylation450kanno_ilmn12_hg19 mboost minfi rms survival survivalROC survivalsvm]; }; + EnhancedVolcano = derive2 { name="EnhancedVolcano"; version="1.12.0"; sha256="19l1yz522hzmwwsgqqhwqrazqf6w015fi3j85n9pxqkyisz2r2x2"; depends=[ggalt ggplot2 ggrastr ggrepel]; }; + EnrichedHeatmap = derive2 { name="EnrichedHeatmap"; version="1.24.0"; sha256="1wbbasz3467jg6anzm57y4kijsysfkah1l5f82qw6ckrhv3rxylc"; depends=[circlize ComplexHeatmap GenomicRanges GetoptLong IRanges locfit matrixStats Rcpp]; }; + EnrichmentBrowser = derive2 { name="EnrichmentBrowser"; version="2.24.0"; sha256="0f8arb1i4cxa65yp15s3nysr0gzq9hvmv6sfbbxq0qfp83dji9c9"; depends=[AnnotationDbi BiocFileCache BiocManager edgeR GO_db graph graphite GSEABase hwriter KEGGgraph KEGGREST limma pathview Rgraphviz S4Vectors safe SPIA SummarizedExperiment]; }; + EpiDISH = derive2 { name="EpiDISH"; version="2.10.0"; sha256="1fqyg3hfc40d1pvw02d95wr1lm2wi82yx3vrrsf7gs53i9gdm2q0"; depends=[e1071 locfdr MASS Matrix matrixStats quadprog stringr]; }; + EpiTxDb = derive2 { name="EpiTxDb"; version="1.6.0"; sha256="0vmn4wqxwczq0ckx0pq20jbjp3a01nxj3knax1d3jx77cqqkwsaz"; depends=[AnnotationDbi BiocFileCache BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges httr IRanges Modstrings RSQLite S4Vectors tRNAdbImport xml2]; }; + EventPointer = derive2 { name="EventPointer"; version="3.2.0"; sha256="0kg5psygc410gx6prb8as00csh6v3s1psbcn2ym4i4k5wnyzmbn3"; depends=[abind affxparser Biostrings BSgenome cobs doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges glmnet graph igraph IRanges iterators limma lpSolve MASS Matrix matrixStats nnls poibin prodlim qvalue RBGL rhdf5 S4Vectors SGSeq speedglm stringr SummarizedExperiment tximport]; }; + ExCluster = derive2 { name="ExCluster"; version="1.12.0"; sha256="1fmijpvkn2qjwl8cqzwclybnfqyrdckxwfc6f1zird770bqyagjv"; depends=[GenomicRanges IRanges matrixStats Rsubread rtracklayer]; }; + ExiMiR = derive2 { name="ExiMiR"; version="2.36.0"; sha256="1vf1241n6f0w7p8m8vwb30dlhybw5ddhp2bgwmn7ml6rfbkidmnk"; depends=[affy affyio Biobase limma preprocessCore]; }; + ExperimentHub = derive2 { name="ExperimentHub"; version="2.2.0"; sha256="15las4qmqvrn81hczxa3ylikqh54kp1lg9r8rcyfvrx5l0kgwlfq"; depends=[AnnotationHub BiocFileCache BiocGenerics BiocManager curl rappdirs S4Vectors]; }; + ExperimentHubData = derive2 { name="ExperimentHubData"; version="1.20.0"; sha256="16xmsq3li7g3qvrfif6yzj5p6qmna6lqfkf1z2bn7k6bpskid3w4"; depends=[AnnotationHubData BiocGenerics BiocManager curl DBI ExperimentHub httr S4Vectors]; }; + ExperimentSubset = derive2 { name="ExperimentSubset"; version="1.4.0"; sha256="1ccz555f5mfvii99w66f076cb22f0ksjxmq9f6bsfxjzsbc7ssnh"; depends=[Matrix S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment TreeSummarizedExperiment]; }; + ExploreModelMatrix = derive2 { name="ExploreModelMatrix"; version="1.6.0"; sha256="162g6zfdhr6gibyqkfwk4y2fd4wmbzwx1frf8rkw6m7ny3mc7s3g"; depends=[cowplot dplyr DT ggplot2 limma magrittr MASS rintrojs S4Vectors scales shiny shinydashboard shinyjs tibble tidyr]; }; + ExpressionAtlas = derive2 { name="ExpressionAtlas"; version="1.22.0"; sha256="0y3gq8ffy527gnyhhqvwjd58a3df50b27d5fvnd37cjm36hk1sbr"; depends=[Biobase httr limma S4Vectors SummarizedExperiment XML xml2]; }; + FCBF = derive2 { name="FCBF"; version="2.2.0"; sha256="1yj8ngsm6sxph3wh14kkam8ndvxfrvfag04vp4ny7aqz2a16prdg"; depends=[ggplot2 gridExtra mclust pbapply SummarizedExperiment]; }; + FEAST = derive2 { name="FEAST"; version="1.2.0"; sha256="05ybk14np0r618whkf99w3n1zk39sz8mjdlcbrdixvphs4wafjpm"; depends=[BiocParallel irlba matrixStats mclust SC3 SingleCellExperiment SummarizedExperiment TSCAN]; }; + FELLA = derive2 { name="FELLA"; version="1.14.0"; sha256="0xs4qky42nz80qmbnb5b925ks76xxpa5mymvrcllzzhbyax2dddc"; depends=[igraph KEGGREST Matrix plyr]; }; + FGNet = derive2 { name="FGNet"; version="3.28.0"; sha256="0mz728i1ylbhwxb41xghrl7aaz5a3s3iaysi0hl7jjmiixvscp90"; depends=[hwriter igraph plotrix png R_utils RColorBrewer reshape2 XML]; }; + FISHalyseR = derive2 { name="FISHalyseR"; version="1.28.0"; sha256="0z9wlk98xicc6bcyx11q25sxrfdiiwcx32bvp3l3xi5r99alwwlp"; depends=[abind EBImage]; }; + FLAMES = derive2 { name="FLAMES"; version="0.99.31"; sha256="098fg6jky98y0wlrrinmjb7r4yf9s40c2kwp0xrn0z5paczj4y56"; depends=[basilisk dplyr magrittr Rcpp reticulate Rhtslib Rsamtools S4Vectors scater scuttle SingleCellExperiment SummarizedExperiment tidyr zlibbioc]; }; + FRASER = derive2 { name="FRASER"; version="1.6.0"; sha256="07xj7fznqmsc71j1s6h7g8jq8cg93hys3q20f7lja6l9032rl5rx"; depends=[AnnotationDbi BBmisc Biobase BiocGenerics BiocParallel biomaRt BSgenome cowplot data_table DelayedArray DelayedMatrixStats extraDistr generics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel HDF5Array IRanges matrixStats OUTRIDER pcaMethods pheatmap plotly PRROC R_utils RColorBrewer Rcpp RcppArmadillo rhdf5 Rsamtools Rsubread S4Vectors SummarizedExperiment tibble VGAM]; }; + FRGEpistasis = derive2 { name="FRGEpistasis"; version="1.30.0"; sha256="1b69g11klf2av1an1h50vz6bkpkjg4v1a2mi9lj0bmwsi7kb7j32"; depends=[fda MASS]; }; + FScanR = derive2 { name="FScanR"; version="1.4.0"; sha256="1xsbf8vxck17s1shs2gxls02wzm3qr9wy8iwr8zqk9gsm5niax4z"; depends=[]; }; + FamAgg = derive2 { name="FamAgg"; version="1.22.0"; sha256="14lldajnl8ppy3nyy5mn987mvjfgr2vpx5zp6ky8md308rvgay0k"; depends=[BiocGenerics gap igraph kinship2 Matrix survey]; }; + FastqCleaner = derive2 { name="FastqCleaner"; version="1.12.0"; sha256="1cw0916qdn1an3wcnx5659q2f22rs78p9m5v2xp9nyp5phjb97pp"; depends=[Biostrings DT htmltools IRanges Rcpp S4Vectors shiny shinyBS ShortRead]; }; + FilterFFPE = derive2 { name="FilterFFPE"; version="1.4.0"; sha256="1c9mfhc4hms2f861f71i7hbhnn3s1xlzabcmdjzybwiv16dl139w"; depends=[doParallel foreach GenomicRanges IRanges Rsamtools S4Vectors]; }; + FindIT2 = derive2 { name="FindIT2"; version="1.0.0"; sha256="1kpxkr6qrbhk5a9lg2z0ga6lsb5s9ll9f3cglpyx35494a0d2zp6"; depends=[BiocGenerics BiocParallel dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel glmnet IRanges MultiAssayExperiment patchwork progress purrr qvalue rlang rtracklayer S4Vectors stringr SummarizedExperiment tibble tidyr withr]; }; + FindMyFriends = derive2 { name="FindMyFriends"; version="1.23.0"; sha256="0xbhl6ljxb522r5062vv6xdziaaqkkwylmvlymvc5f1grjz0a4z9"; depends=[Biobase BiocGenerics BiocParallel Biostrings digest dplyr filehash ggdendro ggplot2 gtable igraph IRanges kebabs Matrix Rcpp reshape2 S4Vectors]; }; + FitHiC = derive2 { name="FitHiC"; version="1.20.0"; sha256="0a3d2bxp98lmbf3i864zgfwxwvxyqfcrh75z9yz7ra7y44pkjr4y"; depends=[data_table fdrtool Rcpp]; }; + FlowSOM = derive2 { name="FlowSOM"; version="2.2.0"; sha256="062xrv8li2z849qa8mv5dhafqli6ziz099ikjfvi7v2fr7174p8f"; depends=[BiocGenerics colorRamps ConsensusClusterPlus CytoML dplyr flowCore flowWorkspace ggforce ggnewscale ggplot2 ggpointdensity ggpubr ggrepel igraph magrittr pheatmap RColorBrewer rlang Rtsne scattermore tidyr XML]; }; + FoldGO = derive2 { name="FoldGO"; version="1.12.0"; sha256="07wk3i9q8m8jaamwfwnnxlm3xc0r7frlk6s2mndkkjs1sfrdb5z3"; depends=[ggplot2 tidyr topGO]; }; + FunChIP = derive2 { name="FunChIP"; version="1.20.0"; sha256="0mgc8jv11cfn5fqlmjnhb3kvf6rzvy5win8vwnk57qsdb2w3ahfh"; depends=[doParallel fda foreach GenomeInfoDb GenomicAlignments GenomicRanges RColorBrewer Rcpp Rsamtools shiny]; }; + GA4GHclient = derive2 { name="GA4GHclient"; version="1.18.0"; sha256="1nc2707n5w5an60wqcya6jp0yj9cga0kc4ls9klkky8wyzf8apc8"; depends=[BiocGenerics Biostrings dplyr GenomeInfoDb GenomicRanges httr IRanges jsonlite S4Vectors VariantAnnotation]; }; + GA4GHshiny = derive2 { name="GA4GHshiny"; version="1.16.0"; sha256="0yrrbml450hl5zi1jjwpsiwxv4fkypxkvrvvqcn6yml5vr85wwyv"; depends=[AnnotationDbi BiocGenerics dplyr DT GA4GHclient GenomeInfoDb GenomicFeatures openxlsx purrr S4Vectors shiny shinyjs shinythemes tidyr]; }; + GAPGOM = derive2 { name="GAPGOM"; version="1.10.0"; sha256="1b18fq56f88ismi7k9i5r1li7mp6hb1hv234j87xidlwm1dxqsvl"; depends=[AnnotationDbi Biobase BiocFileCache data_table dplyr fastmatch GEOquery GO_db GOSemSim graph igraph magrittr Matrix matrixStats org_Hs_eg_db org_Mm_eg_db plyr RBGL]; }; + GARS = derive2 { name="GARS"; version="1.14.0"; sha256="0riypxvxqx9jclqcpg657giszmnvvpzjl7glinf0snjzppgxapv1"; depends=[cluster DaMiRseq ggplot2 MLSeq SummarizedExperiment]; }; + GAprediction = derive2 { name="GAprediction"; version="1.20.0"; sha256="14a273pkvwcbhi1ymlbd63rn560pb0lx9hkl8fsxs1hixjy94zp1"; depends=[glmnet Matrix]; }; + GCSConnection = derive2 { name="GCSConnection"; version="1.6.0"; sha256="0hdywmm7f2va4vwd7pygb2l8a9ajf6pz74i05vmimhblkf9jbr69"; depends=[googleAuthR googleCloudStorageR httr jsonlite Rcpp]; }; + GCSFilesystem = derive2 { name="GCSFilesystem"; version="1.4.0"; sha256="0k2dmiyxfpdr1jzrkkkpj0rqd1s13rwmqfrbc5xkanc5z6wqd8hc"; depends=[]; }; + GCSscore = derive2 { name="GCSscore"; version="1.8.0"; sha256="0zb2fcwqbxl59bvhj73yrb9sq2zld451abb1nmxj92yipbmwjgn6"; depends=[affxparser Biobase BiocManager data_table devtools dplR RSQLite stringr]; }; + GDCRNATools = derive2 { name="GDCRNATools"; version="1.14.0"; sha256="1h0gfi6mhr5kzwhqxkzgxz12abkn7svnbbzga70pp7az8m8vxmnn"; depends=[BiocParallel biomaRt clusterProfiler DESeq2 DOSE DT edgeR GenomicDataCommons ggplot2 gplots jsonlite limma org_Hs_eg_db pathview rjson shiny survival survminer XML]; }; + GDSArray = derive2 { name="GDSArray"; version="1.14.0"; sha256="07b3025fcjrq1kvpb7g6kxqwmk6pwibnv8krmn11ddgl2606k8c3"; depends=[BiocGenerics DelayedArray gdsfmt S4Vectors SeqArray SNPRelate]; }; + GEM = derive2 { name="GEM"; version="1.20.0"; sha256="19jars2vajfgy2v9xrgp45gc2yn2hq31d9ikdpnkd9gvpqm99nkv"; depends=[ggplot2]; }; + GENESIS = derive2 { name="GENESIS"; version="2.24.0"; sha256="1n1h9aiyn8f8cznm8dkvndm3708nls2xr4v21sspz4vj8ahwvgaz"; depends=[Biobase BiocGenerics BiocParallel data_table gdsfmt GenomicRanges GWASTools igraph IRanges Matrix reshape2 S4Vectors SeqArray SeqVarTools SNPRelate]; }; + GENIE3 = derive2 { name="GENIE3"; version="1.16.0"; sha256="0ms769267pimrx3xwwkgjy03qilkxxs7xwhzfca01f65i4n3l6fw"; depends=[dplyr reshape2]; }; + GEOexplorer = derive2 { name="GEOexplorer"; version="1.0.0"; sha256="01hgjdp14b9r2044h0sd136f0px983n0il08wiii41vq1jgisvhb"; depends=[Biobase DT factoextra GEOquery ggplot2 heatmaply htmltools impute limma maptools pheatmap plotly scales shiny shinyBS shinybusy shinyHeatmaply stringr umap]; }; + GEOfastq = derive2 { name="GEOfastq"; version="1.2.0"; sha256="03ya7x7dph6g97aa3gf3d7dinjcy8qipd0dyxqpdhdm1w1gx83by"; depends=[doParallel foreach plyr RCurl rvest stringr xml2]; }; + GEOmetadb = derive2 { name="GEOmetadb"; version="1.56.0"; sha256="18v3h7518cc4fzdi7ivng81316012mry4ihyrldm85zgm4c5dign"; depends=[GEOquery RSQLite]; }; + GEOquery = derive2 { name="GEOquery"; version="2.62.0"; sha256="0fkx4jh1s76l015vwikkryarlx6iihb1z935nzpdhah3rpqx3b3z"; depends=[Biobase data_table dplyr httr limma magrittr readr tidyr xml2]; }; + GEOsubmission = derive2 { name="GEOsubmission"; version="1.46.0"; sha256="0p0w55j7ij1242sa76bhgqwnj5zi0bh7s7qa14iga4ldigpxr63b"; depends=[affy Biobase]; }; + GEWIST = derive2 { name="GEWIST"; version="1.38.0"; sha256="0xcywidrs6jvps93iv3qvr9ai1bdzn95icvswy8ganx09v5hfpy9"; depends=[car]; }; + GGPA = derive2 { name="GGPA"; version="1.6.0"; sha256="0spiix8vlncrc2h1chmkfz8k79lpvq3qya33yyg7avf8dqdqaw31"; depends=[GGally matrixStats network Rcpp RcppArmadillo scales sna]; }; + GIGSEA = derive2 { name="GIGSEA"; version="1.12.0"; sha256="1mdxrrfh15784i5yh2hbdan6ppkw4v2p3fax6hxgpb9w4x2w16my"; depends=[locfdr MASS Matrix]; }; + GISPA = derive2 { name="GISPA"; version="1.18.0"; sha256="0v1ijbq6vc2pvchn37bp5pv1al4j2vsgsm2pb0kbsh3nd856zzsq"; depends=[Biobase changepoint data_table genefilter GSEABase HH lattice latticeExtra plyr scatterplot3d]; }; + GLAD = derive2 { name="GLAD"; version="2.58.0"; sha256="0hd7pf46i192w46zwaiphii2vws014dgwddwava6gxjiwk7fc5in"; depends=[aws]; }; + GMRP = derive2 { name="GMRP"; version="1.22.0"; sha256="1iz0nqhgl5r5q2s00mcqqiv21w11cddmc9jip64n6w78n3c4yxqv"; depends=[diagram GenomicRanges plotrix]; }; + GNET2 = derive2 { name="GNET2"; version="1.10.0"; sha256="0h2l232dyvgpsknk3gml7nqm654h0zwzkikhsjwk2awixmdm8nmc"; depends=[DiagrammeR dplyr ggplot2 igraph matrixStats Rcpp reshape2 SummarizedExperiment xgboost]; }; + GOSemSim = derive2 { name="GOSemSim"; version="2.20.0"; sha256="15qi69kkgah7g25bymk9q1xf16hp1rd040fglg0svnydylg2d0ab"; depends=[AnnotationDbi GO_db Rcpp]; }; + GOSim = derive2 { name="GOSim"; version="1.32.0"; sha256="1l5cxh2zbf0bkgs6xal2zvxlijxmnrjwjy2ajibxxmk3r210dcq4"; depends=[annotate AnnotationDbi cluster corpcor flexmix GO_db graph Matrix org_Hs_eg_db RBGL Rcpp topGO]; }; + GOTHiC = derive2 { name="GOTHiC"; version="1.30.0"; sha256="12hhxcknm4svg5mym6d9d73yxmc5885jm3jl0k243iyp6103z7zy"; depends=[BiocGenerics BiocManager Biostrings BSgenome data_table GenomeInfoDb GenomicRanges ggplot2 IRanges Rsamtools rtracklayer S4Vectors ShortRead]; }; + GOexpress = derive2 { name="GOexpress"; version="1.28.0"; sha256="1mv5bx2m2jhrshdr8p41aixbzi61n20p0nlmdjpcfqp0yz3rjqaw"; depends=[Biobase biomaRt ggplot2 gplots randomForest RColorBrewer RCurl stringr]; }; + GOfuncR = derive2 { name="GOfuncR"; version="1.14.0"; sha256="08n1d03i4l2dl47axmrziiypi83yffndf0ww1b32skyjm2r0x127"; depends=[AnnotationDbi GenomicRanges gtools IRanges mapplots Rcpp vioplot]; }; + GOpro = derive2 { name="GOpro"; version="1.20.0"; sha256="0k5fc1bfmhf370y6w3wb5jivi7wg2wj8nmmh2g3zhnxvxr9vmpf8"; depends=[AnnotationDbi BH dendextend doParallel foreach GO_db IRanges MultiAssayExperiment org_Hs_eg_db Rcpp S4Vectors]; }; + GOstats = derive2 { name="GOstats"; version="2.60.0"; sha256="1f8wqdl0swnvs59i6ljjcaglfqv314n8zxy4crpx806gbjzpn76z"; depends=[annotate AnnotationDbi AnnotationForge Biobase Category GO_db graph RBGL Rgraphviz]; }; + GOsummaries = derive2 { name="GOsummaries"; version="2.30.0"; sha256="1na3mhza11bprki6bxkrabhc0qadprvqs2ca5j00s4f53rwslx75"; depends=[ggplot2 gProfileR gtable limma plyr Rcpp reshape2]; }; + GPA = derive2 { name="GPA"; version="1.6.0"; sha256="0i60bhc6h64wa701482xrqvzqzzh16mpd8rqhhaym5alyazxlwh9"; depends=[DT ggplot2 ggrepel plyr Rcpp shiny shinyBS vegan]; }; + GRENITS = derive2 { name="GRENITS"; version="1.46.0"; sha256="0yxf9z34234821lcbgz535d2mrs6cls2ds2mm5rz2p1vlgl0h38c"; depends=[ggplot2 Rcpp RcppArmadillo reshape2]; }; + GRmetrics = derive2 { name="GRmetrics"; version="1.20.0"; sha256="1ch990zs3gvczfwwwig48hyj6k2n5rkxlc4v5abi1c8cycm19hzm"; depends=[drc ggplot2 plotly S4Vectors SummarizedExperiment]; }; + GRridge = derive2 { name="GRridge"; version="1.18.0"; sha256="1dv0mx8rga92rlpyscfg7pbmx7dfgj9m07dxgqcn7fq4gbif5mmk"; depends=[glmnet graph Iso mvtnorm penalized survival]; }; + GSALightning = derive2 { name="GSALightning"; version="1.22.0"; sha256="1321kkbcdmb1s0hbmj4idqy2sn3slam8knsri37nix10w8f0wd1y"; depends=[data_table Matrix]; }; + GSAR = derive2 { name="GSAR"; version="1.28.0"; sha256="1fc3mph18lfxjnjz2w0jpr4gjxqnp426sml6r235b76gyp5x8wgk"; depends=[igraph]; }; + GSCA = derive2 { name="GSCA"; version="2.24.0"; sha256="15czjsvxsdqirb81ffpkxhlj88z373mzrnbz3kg6f69bls0vlhj9"; depends=[ggplot2 gplots RColorBrewer reshape2 rhdf5 shiny sp]; }; + GSEABase = derive2 { name="GSEABase"; version="1.56.0"; sha256="1i8rryvagxk2pd8nl4a6yldwv82yx869nvv95jf8v00bna08f4d6"; depends=[annotate AnnotationDbi Biobase BiocGenerics graph XML]; }; + GSEABenchmarkeR = derive2 { name="GSEABenchmarkeR"; version="1.14.0"; sha256="0k93wkafx5ifjilp8891ba5xd0ja14jvik7yjni1dmljwxb6g494"; depends=[AnnotationDbi AnnotationHub Biobase BiocFileCache BiocParallel edgeR EnrichmentBrowser ExperimentHub KEGGandMetacoreDzPathwaysGEO KEGGdzPathwaysGEO S4Vectors SummarizedExperiment]; }; + GSEAlm = derive2 { name="GSEAlm"; version="1.54.0"; sha256="0vvjcmajhc8s9sc13ps31lcyivdi2l12ywj7bs3viix9pibkcckv"; depends=[Biobase]; }; + GSEAmining = derive2 { name="GSEAmining"; version="1.4.0"; sha256="002ddzr5faqlp3505ddccvx34rihx0sqg4bp0zjcb1qfvn33410f"; depends=[dendextend dplyr ggplot2 ggwordcloud gridExtra rlang stringr tibble tidytext]; }; + GSRI = derive2 { name="GSRI"; version="2.42.0"; sha256="11g0a9cipm2wlnvppvkfqd7l3bm7jgvd7d9pn65pigrbhx6ginrq"; depends=[Biobase fdrtool genefilter GSEABase les]; }; + GSReg = derive2 { name="GSReg"; version="1.28.0"; sha256="1bkn7vak4dai5sckg0sy39yd092mi7ba8hfm673b54ip2zpj7zng"; depends=[AnnotationDbi GenomicFeatures Homo_sapiens org_Hs_eg_db]; }; + GSVA = derive2 { name="GSVA"; version="1.42.0"; sha256="1z4qm00dby1jmy5awpr8r08k9vsxjdbzp1wqdjy2w0nc0v85314y"; depends=[Biobase BiocParallel BiocSingular DelayedArray DelayedMatrixStats GSEABase HDF5Array IRanges Matrix S4Vectors SingleCellExperiment sparseMatrixStats SummarizedExperiment]; }; + GSgalgoR = derive2 { name="GSgalgoR"; version="1.4.0"; sha256="1lr4c3qy8crba2x093l9ffbb4mj4mh92xz6wil3nrf8djr79x8rh"; depends=[cluster doParallel foreach matchingR nsga2R proxy survival]; }; + GUIDEseq = derive2 { name="GUIDEseq"; version="1.24.0"; sha256="1fpqgr1yjcb9nygl3fp9i6xn5hwjwqjqbqmwhs6qyxdklrsscxyg"; depends=[BiocGenerics BiocParallel Biostrings BSgenome ChIPpeakAnno CRISPRseek data_table dplyr GenomeInfoDb GenomicAlignments GenomicRanges hash IRanges limma matrixStats Rsamtools S4Vectors]; }; + GWAS_BAYES = derive2 { name="GWAS.BAYES"; version="1.4.0"; sha256="0xr1ygs4857qa1ck60syvi46wprhm468iavw7flfkn5p6k5q8xry"; depends=[caret doParallel GA ggplot2 Matrix memoise Rcpp RcppEigen reshape2]; }; + GWASTools = derive2 { name="GWASTools"; version="1.40.0"; sha256="1cnwnx513kjqdymjlm7qx9293w187xzb0s6z185x12x9pli9b7d9"; depends=[Biobase data_table DBI DNAcopy gdsfmt GWASExactHW lmtest logistf quantsmooth RSQLite sandwich survival]; }; + GWENA = derive2 { name="GWENA"; version="1.4.0"; sha256="1b8g94gkywmhwr5padax7y8l6crzqbnzpqf7d8vyslim7419jy7b"; depends=[cluster dplyr dynamicTreeCut ggplot2 gprofiler2 igraph magrittr matrixStats NetRep purrr RColorBrewer rlist stringr SummarizedExperiment tibble tidyr WGCNA]; }; + GateFinder = derive2 { name="GateFinder"; version="1.14.0"; sha256="0kvfggjn0jxf6frr7z11xqgv7j3shgqdcjbq6szd9kph2933f3i6"; depends=[diptest flowCore flowFP mvoutlier splancs]; }; + GenVisR = derive2 { name="GenVisR"; version="1.26.0"; sha256="02n40li1fi40qidd9g33swmicrwlr8wgaph9nz4kmzyvdwgdzg3d"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings BSgenome data_table DBI FField GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra gtable gtools IRanges plyr reshape2 Rsamtools scales VariantAnnotation viridis]; }; + GeneAccord = derive2 { name="GeneAccord"; version="1.12.0"; sha256="0yk5v15c6i9g6qbhn158484v8914x6jc4v8wqbxiard932wggip1"; depends=[biomaRt caTools dplyr ggplot2 ggpubr gtools magrittr maxLik RColorBrewer reshape2 tibble]; }; + GeneAnswers = derive2 { name="GeneAnswers"; version="2.36.0"; sha256="1f8q3hi913khyy1cc3yp2635gaik47alsqmhi0mi24cy340faplz"; depends=[annotate Biobase downloader Heatplus igraph KEGGREST MASS RBGL RColorBrewer RCurl RSQLite XML]; }; + GeneBreak = derive2 { name="GeneBreak"; version="1.24.0"; sha256="1zr73ayvfjr509a778vzggppd1m35jknkzqk0y4730sk755gx9c3"; depends=[CGHbase CGHcall GenomicRanges QDNAseq]; }; + GeneExpressionSignature = derive2 { name="GeneExpressionSignature"; version="1.40.0"; sha256="1d35mqp1x4ajniyy7n8qv69nm31f0acy3lh9brwzkibsqd6n0jw5"; depends=[Biobase]; }; + GeneGA = derive2 { name="GeneGA"; version="1.44.0"; sha256="1d0igfgcvwiljsngaq3hmrzp03sgnj8ksrzaf8n2igpg1lz85b3n"; depends=[hash seqinr]; }; + GeneGeneInteR = derive2 { name="GeneGeneInteR"; version="1.20.0"; sha256="0kbzp1fzygvv1wrknp5nb1cw9kxw7pm51m0m0bjcvqzqxn73g6ad"; depends=[data_table FactoMineR GenomicRanges igraph IRanges kernlab mvtnorm Rsamtools snpStats]; }; + GeneMeta = derive2 { name="GeneMeta"; version="1.66.0"; sha256="0dri85vr0dspzq0px2x2j3y5sn9rvbzk02xk0vnxzpkgqfghg7xv"; depends=[Biobase genefilter]; }; + GeneNetworkBuilder = derive2 { name="GeneNetworkBuilder"; version="1.36.0"; sha256="05kanbr69nf8pb5cqcg97r417lr2qzcg0av1n7vz4ds9wlsn5mc1"; depends=[graph htmlwidgets plyr Rcpp Rgraphviz rjson XML]; }; + GeneOverlap = derive2 { name="GeneOverlap"; version="1.30.0"; sha256="18l5dc4xcy1xa2h3sfw92w9rq9v0mnclamjxmzs5fqi469y5mwmm"; depends=[gplots RColorBrewer]; }; + GeneRegionScan = derive2 { name="GeneRegionScan"; version="1.50.0"; sha256="0bkhadr61i9jsfwp3i3clz4b0yjdav8rnnrmfplh86sq700y58v5"; depends=[affxparser Biobase Biostrings RColorBrewer S4Vectors]; }; + GeneSelectMMD = derive2 { name="GeneSelectMMD"; version="2.38.0"; sha256="1nq6n4bp3ydgpjbsgg3222dd345l5z5yp4mvs4haps6wlc6bin4i"; depends=[Biobase limma MASS]; }; + GeneStructureTools = derive2 { name="GeneStructureTools"; version="1.14.0"; sha256="1w7nckmjc4zg5a20f4hjqjavmkdwngkjp70akrf3bh1qmbvpdr2a"; depends=[Biostrings BSgenome_Mmusculus_UCSC_mm10 data_table GenomicRanges Gviz IRanges plyr rtracklayer S4Vectors stringdist stringr]; }; + GeneTonic = derive2 { name="GeneTonic"; version="1.6.0"; sha256="03kv5fnpa6846akxn71aznn9xs65hl5fqpn2fgpnx91q3qwqgvp9"; depends=[AnnotationDbi backbone bs4Dash circlize colorspace colourpicker ComplexHeatmap dendextend DESeq2 dplyr DT dynamicTreeCut expm ggforce ggplot2 ggrepel GO_db igraph matrixStats plotly RColorBrewer rintrojs rlang rmarkdown S4Vectors scales shiny shinyAce shinycssloaders shinyWidgets SummarizedExperiment tidyr tippy viridis visNetwork]; }; + GeneticsPed = derive2 { name="GeneticsPed"; version="1.56.0"; sha256="1gvk3wg5mqyc8j95l4djfc55ymv4i08az67znnly3r8376m07mqw"; depends=[gdata genetics MASS]; }; + GenoGAM = derive2 { name="GenoGAM"; version="2.11.0"; sha256="058qix2h0zm2k9csmbdhci2wqih3lyggjj591cqn0ls2nv7bnyvj"; depends=[BiocParallel Biostrings data_table DelayedArray DESeq2 futile_logger GenomeInfoDb GenomicAlignments GenomicRanges HDF5Array IRanges Matrix Rcpp RcppArmadillo rhdf5 Rsamtools S4Vectors sparseinv SummarizedExperiment]; }; + GenomeInfoDb = derive2 { name="GenomeInfoDb"; version="1.30.0"; sha256="1r0wblz9w4hqxm15wdssz0invx7hxhg3bnblkia6w3aazh30s6ns"; depends=[BiocGenerics GenomeInfoDbData IRanges RCurl S4Vectors]; }; + GenomicAlignments = derive2 { name="GenomicAlignments"; version="1.30.0"; sha256="1jwksis94mk8bmdggk0w3kvxqwp4di6x78xgsjk6ij54710adyq9"; depends=[BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; }; + GenomicDataCommons = derive2 { name="GenomicDataCommons"; version="1.18.0"; sha256="1nr504dchiifbagrjq0cck5rzd23dcfnvx6bsw9wikw5mg4gib9l"; depends=[dplyr GenomicRanges httr IRanges jsonlite magrittr rappdirs readr rlang S4Vectors SummarizedExperiment tibble xml2]; }; + GenomicDistributions = derive2 { name="GenomicDistributions"; version="1.2.0"; sha256="07c3rxvgm2abs01kzczbpy7kmn3yzcdf5z35dlk1bc2ry3s5dsd1"; depends=[Biostrings data_table dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges plyr reshape2]; }; + GenomicFeatures = derive2 { name="GenomicFeatures"; version="1.46.1"; sha256="1dm049r7k41m8zzp5b332fw3ah3jpzzgpcb21icxwhlg483ipjyv"; depends=[AnnotationDbi Biobase BiocGenerics BiocIO biomaRt Biostrings DBI GenomeInfoDb GenomicRanges IRanges RCurl RSQLite rtracklayer S4Vectors XVector]; }; + GenomicFiles = derive2 { name="GenomicFiles"; version="1.30.0"; sha256="0i5y6dk6z18yqj5k4zy756c6l57z9jq2w5a5dksh2di4qgdgjx3x"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges IRanges MatrixGenerics Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; + GenomicInteractions = derive2 { name="GenomicInteractions"; version="1.28.0"; sha256="090kxq5jn1jfr9fgbkvbjr5g4bcxzgsaal3gc9yx1n7pgmhccfmb"; depends=[Biobase BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gridExtra Gviz igraph InteractionSet IRanges Rsamtools rtracklayer S4Vectors stringr]; }; + GenomicOZone = derive2 { name="GenomicOZone"; version="1.8.0"; sha256="1dx72y7kmj7ng3r6qn9bzlmgq9pf7g738myhgrnmk4ivjl6f615w"; depends=[biomaRt Ckmeans_1d_dp GenomeInfoDb GenomicRanges ggbio ggplot2 gridExtra IRanges lsr plyr Rdpack S4Vectors]; }; + GenomicRanges = derive2 { name="GenomicRanges"; version="1.46.0"; sha256="03fdmzcf8h17ksa3byc3k5mxc65pqrbcnw00myz1q53l01p3cnf2"; depends=[BiocGenerics GenomeInfoDb IRanges S4Vectors XVector]; }; + GenomicScores = derive2 { name="GenomicScores"; version="2.6.0"; sha256="18fzi2qi95851ci7qrzwpb7v6fhwp6xi1d1vk11xbygpbvql5mls"; depends=[AnnotationHub Biobase BiocFileCache BiocGenerics BiocManager Biostrings DelayedArray GenomeInfoDb GenomicRanges HDF5Array IRanges rhdf5 S4Vectors XML]; }; + GenomicSuperSignature = derive2 { name="GenomicSuperSignature"; version="1.2.0"; sha256="0nqzrv3871ywd3p3wpgq3yhmbdqcy27582kmms9mnl8xylyhmw0i"; depends=[Biobase BiocFileCache ComplexHeatmap dplyr flextable ggplot2 ggpubr plotly S4Vectors SummarizedExperiment]; }; + GenomicTuples = derive2 { name="GenomicTuples"; version="1.28.0"; sha256="15rv41z4mxj8nn1mkvs73warygd1cmwi9m7lshgld1wf6zk43ypl"; depends=[BiocGenerics data_table GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; + GeoDiff = derive2 { name="GeoDiff"; version="1.0.0"; sha256="0ci1x5q8k6rjarciasg72j0ngrv79ya2j8plhgjck41v8g10mbi0"; depends=[Biobase GeomxTools lme4 Matrix NanoStringNCTools plyr Rcpp RcppArmadillo robust roptim testthat withr]; }; + GeomxTools = derive2 { name="GeomxTools"; version="2.0.0"; sha256="0pzad7m77aib9pa0p37sa2wcmlcydy5nvz4xiax11szjc0y4ay7f"; depends=[Biobase BiocGenerics data_table dplyr EnvStats lmerTest NanoStringNCTools outliers readxl reshape2 rjson S4Vectors]; }; + GladiaTOX = derive2 { name="GladiaTOX"; version="1.10.0"; sha256="0cybhqzw403vm0w6wimdjb8k0fvfgig53g83k5v9m3i3wp8vk0pz"; depends=[brew data_table DBI ggplot2 ggrepel numDeriv RColorBrewer RCurl RJSONIO RMySQL RSQLite stringr tidyr XML xtable]; }; + Glimma = derive2 { name="Glimma"; version="2.4.0"; sha256="0qkbx9n2vb7kvb5f00csnbffy5bm7hhbdvkx2isgzi0wv0y59kx9"; depends=[DESeq2 edgeR htmlwidgets jsonlite limma S4Vectors SummarizedExperiment]; }; + GlobalAncova = derive2 { name="GlobalAncova"; version="4.12.0"; sha256="12r62a67k3p85lcs8mffai3bzrxq52vm3blgvia3by16nids42d0"; depends=[annotate AnnotationDbi Biobase corpcor dendextend globaltest GSEABase VGAM]; }; + GmicR = derive2 { name="GmicR"; version="1.8.0"; sha256="18rfbdljfc6hl4p9c66j36j0yg19fp8nhv4gny6f8qa9x3n172sd"; depends=[AnnotationDbi ape bnlearn Category data_table doParallel DT foreach GOstats gRain gRbase GSEABase org_Hs_eg_db org_Mm_eg_db reshape2 shiny WGCNA]; }; + GraphAT = derive2 { name="GraphAT"; version="1.66.0"; sha256="07rfgg04qq06mypf8nvaly30jzc58pxw7m19v62hgsjlmyyd3g7g"; depends=[graph MCMCpack]; }; + GraphAlignment = derive2 { name="GraphAlignment"; version="1.58.0"; sha256="0z386wi7rzpc7j6qv98q2rq0a5zm30rryhvir8bi37y7kkgfb45k"; depends=[]; }; + GraphPAC = derive2 { name="GraphPAC"; version="1.36.0"; sha256="19925ha3mr7j399nlwb2vjvsrf7s4xjbq8b6z1k304kxk7d13yp5"; depends=[igraph iPAC RMallow TSP]; }; + GreyListChIP = derive2 { name="GreyListChIP"; version="1.26.0"; sha256="1h7h27q6l9d8j0shklyrh135zrwx56v4zzmm21cj1b7dvmwvpbcv"; depends=[BSgenome GenomeInfoDb GenomicAlignments GenomicRanges MASS Rsamtools rtracklayer SummarizedExperiment]; }; + Guitar = derive2 { name="Guitar"; version="2.10.0"; sha256="082yja4mmsq77sllv3c88agxjbb6jxwil2krb8fkfsijvyyx11c9"; depends=[AnnotationDbi dplyr GenomicFeatures GenomicRanges ggplot2 knitr magrittr rtracklayer]; }; + Gviz = derive2 { name="Gviz"; version="1.38.0"; sha256="0nqa7m300d7gpsayb6c6rv64d3y8c390wvwgz7v29zs9c025s9a8"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings biovizBase BSgenome digest ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges lattice latticeExtra matrixStats RColorBrewer Rsamtools rtracklayer S4Vectors XVector]; }; + HDF5Array = derive2 { name="HDF5Array"; version="1.22.0"; sha256="13h6qr4zkynir0ck2aiasjvlid7hrk3m2lzkjyhpvbg1a15r8zi9"; depends=[BiocGenerics DelayedArray IRanges Matrix rhdf5 rhdf5filters Rhdf5lib S4Vectors]; }; + HDTD = derive2 { name="HDTD"; version="1.28.0"; sha256="1pd0bbni121b5yq3j3sn8n67xgjfm4zygcpx7zgddcnq250544vl"; depends=[Rcpp RcppArmadillo]; }; + HELP = derive2 { name="HELP"; version="1.52.0"; sha256="17bhh9phny0cw3n61582wywl395ls0ak68y8fqv1ibbqiip193ag"; depends=[Biobase]; }; + HEM = derive2 { name="HEM"; version="1.66.0"; sha256="1jv8fwqsk05g7l7bbl7z928m83gk0gw70pix0dp901j9hm1xqjpb"; depends=[Biobase]; }; + HGC = derive2 { name="HGC"; version="1.2.0"; sha256="0skvfx81xvfi8bwlskq1ylr6c5sblh3qzidbz1nb2xa2m4pck2q0"; depends=[ape dendextend dplyr ggplot2 Matrix mclust patchwork RANN Rcpp RcppEigen]; }; + HIBAG = derive2 { name="HIBAG"; version="1.30.0"; sha256="1czraw6a84kfd8sq72sss67ibb76pj2gnkmhx09jalsqjcy72x3i"; depends=[RcppParallel]; }; + HIPPO = derive2 { name="HIPPO"; version="1.6.0"; sha256="0fr1zhavdzf7rmf0diy4r9qphfcphzbcqcs4370fyd4vyz5bid6l"; depends=[dplyr ggplot2 ggrepel gridExtra irlba magrittr Matrix reshape2 rlang Rtsne SingleCellExperiment umap]; }; + HIREewas = derive2 { name="HIREewas"; version="1.12.0"; sha256="0bjj5h9vc1fhzcn31hvkpcmnx6gzmz3fhczgy21q0ngp26ny10yd"; depends=[gplots quadprog]; }; + HMMcopy = derive2 { name="HMMcopy"; version="1.36.0"; sha256="0kbvdsvvrrzy05a5qiybc9chjfiidcz5mk09nj9s2x6vsj2whwxi"; depends=[data_table]; }; + HPAStainR = derive2 { name="HPAStainR"; version="1.4.0"; sha256="1k2q2cj8lbcqdqm7rg9kkj786gvp1h91v7k78syxpsl8mmg58msr"; depends=[data_table dplyr scales shiny stringr tibble tidyr]; }; + HPAanalyze = derive2 { name="HPAanalyze"; version="1.12.0"; sha256="1cm64d8sp2z03s5i6i8a625wr80nw5c1ri7kfrx5jv60379srbz9"; depends=[dplyr ggplot2 gridExtra openxlsx tibble xml2]; }; + HPiP = derive2 { name="HPiP"; version="1.0.0"; sha256="0wfyy4lpv24zad30qngicvrg1yaz9xzx8n48fgcafwps09n8ai25"; depends=[caret corrplot dplyr ggplot2 httr igraph magrittr pROC protr PRROC purrr readr stringr tibble tidyr]; }; + HTSFilter = derive2 { name="HTSFilter"; version="1.34.0"; sha256="0jc2yxx0jysd1h2qnn3mv3zfm8bxc96wig6gywlqxy5rbcrm3gm5"; depends=[Biobase BiocParallel DESeq2 edgeR]; }; + HTSeqGenie = derive2 { name="HTSeqGenie"; version="4.24.0"; sha256="12q18chk89vvqh02yqx9fg8vfmb5xlk96b1mrhiyx2dfa7z2jj80"; depends=[BiocGenerics BiocParallel Biostrings Cairo chipseq GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gmapR hwriter IRanges Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment VariantAnnotation VariantTools]; }; + HTqPCR = derive2 { name="HTqPCR"; version="1.48.0"; sha256="1d7qj5yv6kzqmdrnp5pd8qv1yr4bg8cs39p8ib0i0k8b4wr97kq3"; depends=[affy Biobase gplots limma RColorBrewer]; }; + Harman = derive2 { name="Harman"; version="1.22.0"; sha256="174fnjd332qahm8m5dyism83zzq3vpz3pmj6k645hpal1w2x5x5z"; depends=[Rcpp]; }; + Harshlight = derive2 { name="Harshlight"; version="1.66.0"; sha256="0a0zxy2f5ff74gaa24mahym2az2azp4k4i4hw8kgj7zj4mj6pzjz"; depends=[affy altcdfenvs Biobase]; }; + Heatplus = derive2 { name="Heatplus"; version="3.2.0"; sha256="0yrnjrbfn8vjzvp2742lyxdqca4s18h73j44qxw7ib95x3p4lndf"; depends=[RColorBrewer]; }; + HelloRanges = derive2 { name="HelloRanges"; version="1.20.0"; sha256="1f9fyafp3spxb76xl8ncww0dzfi4dbzh9ijqzs89dc7m10saq89p"; depends=[BiocGenerics Biostrings BSgenome docopt GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; + Herper = derive2 { name="Herper"; version="1.3.0"; sha256="038cavnbz7gvmv9mpnf88n8dzrg7yl306y68zsq5hpkrj6qax9vr"; depends=[reticulate rjson withr]; }; + HiCBricks = derive2 { name="HiCBricks"; version="1.11.0"; sha256="12s01r9z569pp6amlvcs7fqmwivw9jb2ahnnyq6nzflsyn5277kl"; depends=[BiocParallel curl data_table digest GenomeInfoDb GenomicRanges ggplot2 IRanges jsonlite R_utils R6 RColorBrewer readr reshape2 rhdf5 S4Vectors scales stringr tibble viridis]; }; + HiCDCPlus = derive2 { name="HiCDCPlus"; version="1.2.0"; sha256="0csm0ffbn3ya8fb936dy9g5sbvszsn274wszm871n248s9vqn8k7"; depends=[bbmle Biostrings BSgenome data_table dplyr GenomeInfoDb GenomicInteractions GenomicRanges InteractionSet IRanges MASS pscl R_utils Rcpp rlang rtracklayer S4Vectors tibble tidyr]; }; + HiCcompare = derive2 { name="HiCcompare"; version="1.16.0"; sha256="0g2gsy27prk8b4anywim0qskishc52zh0p3854v04l6jax26675r"; depends=[BiocParallel data_table dplyr GenomicRanges ggplot2 gridExtra gtools InteractionSet IRanges KernSmooth mgcv pheatmap QDNAseq rhdf5 S4Vectors]; }; + HiLDA = derive2 { name="HiLDA"; version="1.8.0"; sha256="02yss2nr6f9zb6kd11id4p3zcgdvr66zlf4s404nh1aag221bc7h"; depends=[abind BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg19 cowplot forcats GenomicFeatures GenomicRanges ggplot2 R2jags Rcpp S4Vectors stringr tidyr TxDb_Hsapiens_UCSC_hg19_knownGene XVector]; }; + HiTC = derive2 { name="HiTC"; version="1.38.0"; sha256="1ckiwqfq86k8p3y36iwr7k3y6g4z80n8hb047c0i2491lrn23rhx"; depends=[Biostrings GenomeInfoDb GenomicRanges IRanges Matrix RColorBrewer rtracklayer]; }; + HilbertCurve = derive2 { name="HilbertCurve"; version="1.24.0"; sha256="1i6fm91y6dza021d5qc8s03x7qmalmm9bkmcj5rflbra5i6fzivz"; depends=[circlize GenomicRanges HilbertVis IRanges png polylabelr]; }; + HilbertVis = derive2 { name="HilbertVis"; version="1.52.0"; sha256="1vwyzxdjngi1firr8kasiam576kwvlx82g1p7j27vlbs1libr9zk"; depends=[lattice]; }; + HilbertVisGUI = derive2 { name="HilbertVisGUI"; version="1.52.0"; sha256="0db7chajaghg6wqawap05ckaadgxvcswzd14i4p6gmfq6j4zpk8g"; depends=[HilbertVis]; }; + HubPub = derive2 { name="HubPub"; version="1.2.0"; sha256="0jjncy9g1cq2n0cf5r7i4sh7sqygvjdm0gpdswhv8s78hdczyq05"; depends=[available aws_s3 BiocManager biocthis dplyr fs usethis]; }; + HumanTranscriptomeCompendium = derive2 { name="HumanTranscriptomeCompendium"; version="1.10.0"; sha256="0v0yshvay7z1dalilx4w1jnswrr96gmsm71srh0j1q91f7ikwds9"; depends=[S4Vectors shiny ssrch SummarizedExperiment]; }; + HybridMTest = derive2 { name="HybridMTest"; version="1.38.0"; sha256="1p31y61gjii29pllwpyb27ii96ckkd4v78pddnvz9c8fq61bmk6k"; depends=[Biobase fdrtool MASS survival]; }; + IHW = derive2 { name="IHW"; version="1.22.0"; sha256="0vgij5zyaw3fh7arkg4jy1mizsqzbkcsjl05mh3ng2bqh30kyqqx"; depends=[BiocGenerics fdrtool lpsymphony slam]; }; + ILoReg = derive2 { name="ILoReg"; version="1.4.0"; sha256="0pyjaf84nqgf3s6v7lp7xw4451mgb48mwzn1dj7n8cpiwwd85q2l"; depends=[aricode cluster cowplot dendextend DescTools doRNG doSNOW dplyr fastcluster foreach ggplot2 LiblineaR Matrix parallelDist pheatmap plyr reshape2 RSpectra Rtsne S4Vectors scales SingleCellExperiment SparseM SummarizedExperiment umap]; }; + IMAS = derive2 { name="IMAS"; version="1.18.0"; sha256="101ir2360hycgk7w1ci7f56kdk2f47i31fv97bnlg803qbjc3hkb"; depends=[AnnotationDbi BiocGenerics BiocParallel doParallel foreach GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggfortify ggplot2 gridExtra IRanges IVAS lattice lme4 Matrix Rsamtools S4Vectors survival]; }; + IMMAN = derive2 { name="IMMAN"; version="1.14.0"; sha256="1zg4z11v1aw0yscb8p79mh4lpyf8hzph2hdaabrxv9rg0lw1l6pb"; depends=[Biostrings igraph seqinr STRINGdb]; }; + IMPCdata = derive2 { name="IMPCdata"; version="1.30.0"; sha256="0vz9f6zqzprgh2dmlfmbvjian5vkkhbary6vlp59f4v624x63x58"; depends=[rjson]; }; + INDEED = derive2 { name="INDEED"; version="2.8.0"; sha256="1f2i63h4ikdrxyjfzccbhz72195sylqd1766m8b7vz8k4638wbbq"; depends=[devtools glasso igraph visNetwork]; }; + INPower = derive2 { name="INPower"; version="1.30.0"; sha256="1a2ni53b49qiaryyzl4gq7rlkypqrijw3b5ah2l2lcgkjaas6mmj"; depends=[mvtnorm]; }; + INSPEcT = derive2 { name="INSPEcT"; version="1.24.0"; sha256="072kv5k3giyll1clzrg0anqhyl4qbi7cjnmkqz25zdl5bab9l7jk"; depends=[Biobase BiocGenerics BiocParallel DESeq2 deSolve gdata GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges KernSmooth plgem pROC rootSolve Rsamtools rtracklayer S4Vectors shiny SummarizedExperiment TxDb_Mmusculus_UCSC_mm9_knownGene]; }; + IONiseR = derive2 { name="IONiseR"; version="2.18.0"; sha256="1hdg446z5s616aaalzz49if1wp9nmzm2mbyva82m1vz8i7ih9m4h"; depends=[BiocGenerics BiocParallel Biostrings bit64 dplyr ggplot2 magrittr rhdf5 ShortRead stringr tibble tidyr XVector]; }; + IPO = derive2 { name="IPO"; version="1.20.0"; sha256="0cmdz3d5ayjgk4dwdscczxz1zcrfcsq2ajj5rzwhz9jxh8j272c9"; depends=[BiocParallel CAMERA rsm xcms]; }; + IRISFGM = derive2 { name="IRISFGM"; version="1.2.0"; sha256="1yqn4yy7bi6xkywr8pr742a87vxfynwxk67ddld7642dz0mfcb85"; depends=[AdaptGauss AnnotationDbi anocva clusterProfiler colorspace DEsingle DrImpute ggplot2 ggpubr ggraph igraph knitr Matrix MCL mixtools org_Hs_eg_db org_Mm_eg_db pheatmap Polychrome RColorBrewer Rcpp scater scran Seurat SingleCellExperiment]; }; + IRanges = derive2 { name="IRanges"; version="2.28.0"; sha256="07zs231wbfwwc1c1165rhp711fbss40p9l8kyjjv9flzpr3hr1pg"; depends=[BiocGenerics S4Vectors]; }; + ISAnalytics = derive2 { name="ISAnalytics"; version="1.4.1"; sha256="0pyw5dwglnba0qanxhcpcz7v12vmf2dz0pv7p2n8wav0xqy8x4sm"; depends=[BiocParallel data_table dplyr fs ggplot2 ggrepel lifecycle lubridate magrittr psych purrr Rcapture readr readxl rlang stringr tibble tidyr zip]; }; + ISoLDE = derive2 { name="ISoLDE"; version="1.22.0"; sha256="16qfv44341n1l69zh86k445kspaygy0y4by7jms8fhnyiw7pd261"; depends=[]; }; + ITALICS = derive2 { name="ITALICS"; version="2.54.0"; sha256="17d12vcbwmvqfg5bfp5854g2n3c6mg30gdm5cm07k29h1y6q25h7"; depends=[affxparser DBI GLAD ITALICSData oligo oligoClasses pd_mapping50k_xba240]; }; + IVAS = derive2 { name="IVAS"; version="2.14.0"; sha256="02cwi01iamig91hwjsx481l61cxxzrhazxfnw2p1q18ydkc9w6fv"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges ggfortify ggplot2 IRanges lme4 Matrix S4Vectors]; }; + IWTomics = derive2 { name="IWTomics"; version="1.18.0"; sha256="1d9mh2j8al6mzzshsxr1rzqqdqy10rf83yskk2wda37mx1m1i891"; depends=[fda GenomicRanges gtable IRanges KernSmooth S4Vectors]; }; + Icens = derive2 { name="Icens"; version="1.66.0"; sha256="08jd7g28mazvwd3qbq8y26czmkz45avp4vy8l7i5d6qajwzqzgzs"; depends=[survival]; }; + IdeoViz = derive2 { name="IdeoViz"; version="1.30.0"; sha256="0cclk2pcb2mvsfxhw0zq3qlnfkblb1gqxnn7xypmlf0bm6hcvl4g"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges RColorBrewer rtracklayer]; }; + IgGeneUsage = derive2 { name="IgGeneUsage"; version="1.8.0"; sha256="1c9dl6f6xgmqhkhklx94rlx0gbjy2b5k6cd59cjv25b7h2jdv3yq"; depends=[Rcpp reshape2 rstan StanHeaders SummarizedExperiment]; }; + ImmuneSpaceR = derive2 { name="ImmuneSpaceR"; version="1.22.0"; sha256="1mdw3rc0p73mwyhdbhmw0pds25qrca8ywld2bi7ws5gh8ivv5lfh"; depends=[Biobase curl data_table digest flowCore flowWorkspace ggplot2 gplots heatmaply httr jsonlite pheatmap plotly preprocessCore R6 Rlabkey rmarkdown scales]; }; + InPAS = derive2 { name="InPAS"; version="2.2.0"; sha256="11hgqbnfny72kv64vp32w90d5dj3d5pn7x9hj0w2qqxnpxzfy8z5"; depends=[AnnotationDbi Biobase BiocParallel Biostrings BSgenome cleanUpdTSeq DBI depmixS4 dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges limma magrittr plyranges preprocessCore purrr readr reshape2 RSQLite S4Vectors]; }; + InTAD = derive2 { name="InTAD"; version="1.14.0"; sha256="1q4880cdmns437l3dvhvc13cvzy1v2ykkxiyn96r8zydd2s0dh6p"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 ggpubr IRanges mclust MultiAssayExperiment qvalue rtracklayer S4Vectors SummarizedExperiment]; }; + Informeasure = derive2 { name="Informeasure"; version="1.4.0"; sha256="0h6990ga4algwgc05092ii46ysj3v5f2ah9lk8wfd17wg6l678dg"; depends=[entropy]; }; + IntEREst = derive2 { name="IntEREst"; version="1.18.0"; sha256="1949smn27d3k10s4cwwri1jaqdp0sqym57m68y6jxkyb2wcbchs8"; depends=[BiocGenerics BiocParallel Biostrings DBI DESeq2 DEXSeq edgeR GenomicAlignments GenomicFeatures GenomicRanges IRanges RMySQL Rsamtools S4Vectors seqinr seqLogo SummarizedExperiment]; }; + InterCellar = derive2 { name="InterCellar"; version="2.0.0"; sha256="0ln3gq4gbr91dn8cfx5ykgx5pdqm1y9x8v4v74a261icd4mi1s49"; depends=[biomaRt circlize colorspace colourpicker ComplexHeatmap config data_table dendextend dplyr DT factoextra fmsb fs ggplot2 golem htmltools htmlwidgets igraph plotly plyr readxl rlang scales shiny shinyalert shinycssloaders shinydashboard shinyFeedback shinyFiles signal tibble tidyr umap visNetwork wordcloud2]; }; + InterMineR = derive2 { name="InterMineR"; version="1.16.0"; sha256="0ab29ppcg0qaxb34gfp7yk0f7z77lfxzz2xjsc2baiymbbv3r0vr"; depends=[Biostrings GenomicRanges httr igraph IRanges RCurl RJSONIO S4Vectors sqldf SummarizedExperiment XML xml2]; }; + InteractionSet = derive2 { name="InteractionSet"; version="1.22.0"; sha256="19m2mpby73zanai68rlqvzx9zccli4dz4kix93acrw9755xp3bsw"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges Matrix Rcpp S4Vectors SummarizedExperiment]; }; + InteractiveComplexHeatmap = derive2 { name="InteractiveComplexHeatmap"; version="1.2.0"; sha256="1rmzl0qyz2qm6zjdyjlipa0bp15xb7p25g7wvd2mlxvpn47hf80r"; depends=[clisymbols ComplexHeatmap digest fontawesome GetoptLong htmltools IRanges jsonlite kableExtra RColorBrewer S4Vectors shiny svglite]; }; + IntramiRExploreR = derive2 { name="IntramiRExploreR"; version="1.16.0"; sha256="18x08rfxvqf1g7haidbzmlg5zd22w8140rhba5jzxpcyx8mcz6h7"; depends=[FGNet igraph knitr]; }; + IsoCorrectoR = derive2 { name="IsoCorrectoR"; version="1.12.0"; sha256="0z2aw2ldar3qq7ddza0k87gksix1j829j76arqyg4w2w0yp9r2q6"; depends=[dplyr magrittr pracma quadprog readr readxl stringr tibble WriteXLS]; }; + IsoCorrectoRGUI = derive2 { name="IsoCorrectoRGUI"; version="1.10.0"; sha256="0mbfm2v8hhmff3yix9znvb6fbjwlgf76bgjyzx000dvpnp7pjrz7"; depends=[IsoCorrectoR readxl tcltk2]; }; + IsoGeneGUI = derive2 { name="IsoGeneGUI"; version="2.30.0"; sha256="0970w1g6na4iwqcyml2b9amx816n05n78ara1qrxvdx6swxw3r8s"; depends=[Biobase ff geneplotter goric Iso IsoGene jpeg multtest ORCME ORIClust orQA RColorBrewer Rcpp relimp tkrplot xlsx]; }; + IsoformSwitchAnalyzeR = derive2 { name="IsoformSwitchAnalyzeR"; version="1.16.0"; sha256="14bqf39gw5ab5r9sr3afkig1jbzdvds1bmcvc6bpb45kschx7fwf"; depends=[Biobase BiocGenerics Biostrings BSgenome DBI DEXSeq dplyr DRIMSeq edgeR futile_logger GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges limma magrittr plyr RColorBrewer RCurl readr reshape2 rtracklayer stringr tibble tximeta tximport VennDiagram XVector]; }; + KBoost = derive2 { name="KBoost"; version="1.2.0"; sha256="1c4l5lwiarm6l6nbqcw85sf16am3x06a1wfsfcm91pchkdl1jx08"; depends=[]; }; + KCsmart = derive2 { name="KCsmart"; version="2.52.0"; sha256="17glg0m4c5k5ridr3k25r4wpwsp1bsl51lgi270sl590rbj2634n"; depends=[BiocGenerics KernSmooth multtest siggenes]; }; + KEGGREST = derive2 { name="KEGGREST"; version="1.34.0"; sha256="1np3i1k7rki9akh70156ggmid52yy0is9q5vd3s45ra7an0ap279"; depends=[Biostrings httr png]; }; + KEGGgraph = derive2 { name="KEGGgraph"; version="1.54.0"; sha256="1qqvbv1sq9j570syb2802ya2ffg1k8f1w986wr6ksqkwxb9qbbm4"; depends=[graph RCurl Rgraphviz XML]; }; + KEGGlincs = derive2 { name="KEGGlincs"; version="1.20.0"; sha256="00dxgb1lg6a38w58dqchma854zg999byb7iil9s5bj5czlycdqsx"; depends=[AnnotationDbi gtools hgu133a_db httr igraph KEGGgraph KEGGREST KOdata org_Hs_eg_db plyr RJSONIO XML]; }; + KinSwingR = derive2 { name="KinSwingR"; version="1.12.0"; sha256="0cadjv0bymarmn00i5ybv2dssvwhr7q588qwa5fxly58rgppqxbj"; depends=[BiocParallel data_table sqldf]; }; + KnowSeq = derive2 { name="KnowSeq"; version="1.8.0"; sha256="1b69hx47pnxmd8kcrsfcvr3498f1lclgicvvbf0glhllag8202p9"; depends=[caret cqn e1071 edgeR ggplot2 gridExtra Hmisc httr jsonlite kernlab limma praznik R_utils randomForest reshape2 rlist rmarkdown stringr sva XML]; }; + LACE = derive2 { name="LACE"; version="1.6.0"; sha256="01p3paiz4qjyvmphnm157k5ihqs6413gah6y68r3ziirqsccccls"; depends=[data_tree igraph RColorBrewer Rfast SummarizedExperiment]; }; + LBE = derive2 { name="LBE"; version="1.62.0"; sha256="0l2k69n267si9jdkbw7immin93vvs8ilf3vrnmjjd68d28501psf"; depends=[]; }; + LEA = derive2 { name="LEA"; version="3.6.0"; sha256="09hsb17r2iz8iadyja0y7sgrs3nic1dwl3ghfs073i1mbvhqd6hh"; depends=[]; }; + LOBSTAHS = derive2 { name="LOBSTAHS"; version="1.20.0"; sha256="1nbb29mn4jybv15xkw9fkjz19rm3ydqiyvq8mf85v078ry701bkr"; depends=[CAMERA xcms]; }; + LOLA = derive2 { name="LOLA"; version="1.24.0"; sha256="09cnh0qlwk7pf4r6pnv3dlyxr2fq95ah3zq0n04inlm424i2s87d"; depends=[BiocGenerics data_table GenomicRanges IRanges reshape2 S4Vectors]; }; + LPE = derive2 { name="LPE"; version="1.68.0"; sha256="0in97g7yj7s871f5vmvc2racrcmd60dnvdmdx9wnkcymxlpvvk0h"; depends=[]; }; + LPEadj = derive2 { name="LPEadj"; version="1.54.0"; sha256="05dy18bcjg50w05xmm8j3585wm5s97jyyvgz6a7v6y8qw14z8j86"; depends=[LPE]; }; + LRBaseDbi = derive2 { name="LRBaseDbi"; version="2.4.0"; sha256="13vzh4ma1msl8xn5m12w7wsppjsaq0a5xhbij27xg5h6wdwn4p8s"; depends=[AnnotationDbi Biobase DBI RSQLite]; }; + LRcell = derive2 { name="LRcell"; version="1.2.0"; sha256="1793a94jvlpfn6dnvc1q1kprxv6gr41q3mf424ggg2hkkqx3b14w"; depends=[AnnotationHub BiocParallel dplyr ExperimentHub ggplot2 ggrepel magrittr]; }; + LedPred = derive2 { name="LedPred"; version="1.28.0"; sha256="0kwj4qavxx34s5xhhx8w7rhx8lni46ynf45bjryz1v6x3hcw7kvw"; depends=[akima e1071 ggplot2 irr jsonlite plot3D plyr RCurl ROCR testthat]; }; + LineagePulse = derive2 { name="LineagePulse"; version="1.14.0"; sha256="0ycmzxf5pm0c36924kggn02rhx5fi4345xf569y4zq4pyb9lzc4c"; depends=[BiocParallel circlize ComplexHeatmap ggplot2 gplots knitr Matrix RColorBrewer SingleCellExperiment SummarizedExperiment]; }; + LinkHD = derive2 { name="LinkHD"; version="1.8.0"; sha256="006633y3h5702b92z9i6yj4agvwirmbvm48zqcgkn71gm21ln1bd"; depends=[cluster data_table emmeans ggplot2 ggpubr gridExtra MultiAssayExperiment reshape2 rio scales vegan]; }; + Linnorm = derive2 { name="Linnorm"; version="2.18.0"; sha256="1bdnglznsfs1kdscqyjv595wiy09khcv9kxm4fmbnmksisqjz5qj"; depends=[amap apcluster ellipse fastcluster fpc ggdendro ggplot2 gmodels igraph limma MASS mclust Rcpp RcppArmadillo Rtsne statmod vegan zoo]; }; + LiquidAssociation = derive2 { name="LiquidAssociation"; version="1.48.0"; sha256="006z8jiw7xcsmv95na4rd4y5n6s3j5gb2jvs3k1b1vl85jw656zf"; depends=[Biobase geepack org_Sc_sgd_db yeastCC]; }; + LoomExperiment = derive2 { name="LoomExperiment"; version="1.12.0"; sha256="1ry960v987q0zk57z1jxgj0gnvlcd05hg75dvgi4hg9m0j4wmx4v"; depends=[BiocIO DelayedArray GenomicRanges HDF5Array Matrix rhdf5 S4Vectors SingleCellExperiment stringr SummarizedExperiment]; }; + LowMACA = derive2 { name="LowMACA"; version="1.24.0"; sha256="08pn7ah79lxk24j7x8d3ngj50mfb6bfngqj72ahs0vibypxbdhnj"; depends=[BiocParallel Biostrings cgdsr data_table gridBase httr LowMACAAnnotation motifStack RColorBrewer reshape2 stringr]; }; + LymphoSeq = derive2 { name="LymphoSeq"; version="1.22.0"; sha256="0nkbl7g6ssrrqfkd7hbb42x4kr3av9c739pbhi3mlvd6zbxxd6ka"; depends=[Biostrings circlize data_table dplyr ggplot2 ggtree ineq LymphoSeqDB msa phangorn plyr RColorBrewer reshape stringdist UpSetR VennDiagram]; }; + M3C = derive2 { name="M3C"; version="1.16.0"; sha256="0jsql5wd58hs5mnn9wq5b4kl3z57y6amykirfb3k047zpyi8ijnh"; depends=[cluster corpcor doParallel doSNOW foreach ggplot2 Matrix matrixcalc Rtsne umap]; }; + M3Drop = derive2 { name="M3Drop"; version="1.20.0"; sha256="1r86q4gwv6haqb4z6b7a37cgkxm0a7byyv7630ag0kv27hq749xq"; depends=[bbmle gplots Hmisc irlba Matrix matrixStats numDeriv RColorBrewer reldist statmod]; }; + MACPET = derive2 { name="MACPET"; version="1.14.0"; sha256="087x5qk3s0s0wk0rvd88b4b03fhj8c12hvin97y2xqikh8bsjwjb"; depends=[BH bigmemory BiocParallel Biostrings futile_logger GenomeInfoDb GenomicAlignments GenomicRanges GEOquery gtools InteractionSet intervals IRanges knitr plyr Rbowtie Rcpp Rsamtools rtracklayer S4Vectors ShortRead]; }; + MACSQuantifyR = derive2 { name="MACSQuantifyR"; version="1.8.0"; sha256="1zhs1jjnzfrbhln5cyb6mr4mns6ad9dzrkr0miwknqbvzbyq2i8z"; depends=[ggplot2 ggrepel gridExtra lattice latticeExtra png prettydoc readxl rmarkdown rvest xml2]; }; + MACSr = derive2 { name="MACSr"; version="1.2.0"; sha256="0b1h233bz7yqcnjgr71lgsj8cj4r41icxsblizd4l071w8md4qrr"; depends=[AnnotationHub basilisk ExperimentHub reticulate S4Vectors]; }; + MADSEQ = derive2 { name="MADSEQ"; version="1.20.0"; sha256="1h0a9r05nvk6gymak8cxfx8i6x2k9ra5d60ndj08b2x3kqkn1gvg"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 coda GenomeInfoDb GenomicAlignments GenomicRanges IRanges preprocessCore rjags Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation vcfR VGAM zlibbioc]; }; + MAGAR = derive2 { name="MAGAR"; version="1.2.0"; sha256="1dpa58arfcfq6knjs85crp3cpj2hfhvhsl7cv0bfpljavq2i43wp"; depends=[argparse bigstatsr crlmm data_table doParallel ff HDF5Array igraph impute jsonlite plyr reshape2 rjson RnBeads RnBeads_hg19 snpStats UpSetR]; }; + MAGeCKFlute = derive2 { name="MAGeCKFlute"; version="1.14.0"; sha256="118nn59b5dc9aq953x1sx4yy4hjagy1pnx5ga888avrg91gwlrsl"; depends=[Biobase clusterProfiler enrichplot ggplot2 ggrepel gridExtra reshape2]; }; + MAI = derive2 { name="MAI"; version="1.0.0"; sha256="14mwfjx8b3miykbs26h5ha1yj2hdsxlakslvra31vkbx2m3mf8ia"; depends=[caret doParallel e1071 foreach future future_apply missForest pcaMethods S4Vectors SummarizedExperiment tidyverse]; }; + MAIT = derive2 { name="MAIT"; version="1.28.0"; sha256="0f343lsn90lg8l0774js479rg5zl0kq5lyicy3n3bgjf1wwlvalx"; depends=[agricolae CAMERA caret class e1071 gplots MASS pls plsgenomics Rcpp xcms]; }; + MANOR = derive2 { name="MANOR"; version="1.66.0"; sha256="12bsca5qzpmh4784ml4nvhsp65q5aipsajwqkb2ak42kz6k662p3"; depends=[GLAD]; }; + MAST = derive2 { name="MAST"; version="1.20.0"; sha256="14h6giny9lhzqjsx3h7gdhsm8wfwnvp5zsl4avrflip0jmsn45yy"; depends=[abind Biobase BiocGenerics data_table ggplot2 plyr progress reshape2 S4Vectors SingleCellExperiment stringr SummarizedExperiment]; }; + MBASED = derive2 { name="MBASED"; version="1.28.0"; sha256="11rbsaki3nbzil2p8fv7b7biykb60398ayq8sc8drqpiam15myy7"; depends=[BiocGenerics BiocParallel GenomicRanges RUnit SummarizedExperiment]; }; + MBAmethyl = derive2 { name="MBAmethyl"; version="1.28.0"; sha256="1jkvx523spv55qrikg26xc2r9qb72y7kfa161ha6jjm8l57rb6bv"; depends=[]; }; + MBCB = derive2 { name="MBCB"; version="1.48.0"; sha256="06idlf8s0a59q45rckflxi5m3i7rgn8lphzyw2fgajvv4df5j7q3"; depends=[preprocessCore tcltk2]; }; + MBQN = derive2 { name="MBQN"; version="2.5.0"; sha256="01pf9wkk3dsxgx1y8mxfxn9m2j2hqipc5kajm7w8g60bj9flg09j"; depends=[BiocFileCache ggplot2 limma PairedData preprocessCore rappdirs RCurl rpx SummarizedExperiment xml2]; }; + MBttest = derive2 { name="MBttest"; version="1.22.0"; sha256="115bkavx4pqy7sh70m5jmghk784f4cqm6z91z5s44m8c00a58vnp"; depends=[gplots gtools]; }; + MCbiclust = derive2 { name="MCbiclust"; version="1.18.0"; sha256="1sswmmdkxw41pzqzqxs8rq581jx1wprcmafagnn4n39h2mw00wwy"; depends=[AnnotationDbi BiocParallel cluster GGally ggplot2 GO_db org_Hs_eg_db scales WGCNA]; }; + MDTS = derive2 { name="MDTS"; version="1.14.0"; sha256="124ixdshragwgnr4rz5qii2j0j74ybm5h8y3k2h1kba56632ff1s"; depends=[Biostrings DNAcopy GenomicAlignments GenomicRanges IRanges Rsamtools stringr]; }; + MEAL = derive2 { name="MEAL"; version="1.24.0"; sha256="10v5xncsfanisk74x4nqgyraypckxznb5pzaaa92nlxakly80qgj"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 Gviz IRanges isva limma matrixStats minfi missMethyl MultiDataSet permute S4Vectors SmartSVA SummarizedExperiment vegan]; }; + MEAT = derive2 { name="MEAT"; version="1.6.0"; sha256="161pdgsnwa9xj1s67d0k65pf3af8mzl0h6p9xsjksfs1f717yw32"; depends=[dplyr dynamicTreeCut glmnet impute minfi RPMM stringr SummarizedExperiment tibble wateRmelon]; }; + MEB = derive2 { name="MEB"; version="1.8.0"; sha256="13cxv0m4kcfrjs63lv9a29pjmi45ywvah3k62xq6y123pczpkv4b"; depends=[e1071 SummarizedExperiment]; }; + MEDIPS = derive2 { name="MEDIPS"; version="1.46.0"; sha256="0rkrx75qvldlc12m0ijky513ka6p82zlcpany604di3k4gdvvazp"; depends=[biomaRt Biostrings BSgenome DNAcopy edgeR GenomicRanges gtools IRanges preprocessCore Rsamtools rtracklayer]; }; + MEDME = derive2 { name="MEDME"; version="1.54.0"; sha256="1av3wijvx7m5m9ickpxxwljanxand8sga00lkkjwyci55jnrvzsi"; depends=[Biostrings drc MASS]; }; + MEIGOR = derive2 { name="MEIGOR"; version="1.28.0"; sha256="18046q1nnvfb2ins248jkz651smz74cib1yzak4fgd05wxl5vl1y"; depends=[CNORode deSolve Rsolnp snowfall]; }; + MGFM = derive2 { name="MGFM"; version="1.28.0"; sha256="0ihq2faqnja4p138rwljh3wv56swjbad6wljry6siawsfnkc1jb7"; depends=[annotate AnnotationDbi]; }; + MGFR = derive2 { name="MGFR"; version="1.20.0"; sha256="17acf2qfp6qk1n2q5bc5drrl0d876w6zpv7j7k6vhwq801yfka45"; depends=[annotate biomaRt]; }; + MIGSA = derive2 { name="MIGSA"; version="1.18.0"; sha256="13ilzr39pbq9slh5rf30hmsvppbqkdqim420wdasgg8psysjh2hf"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel data_table edgeR futile_logger ggdendro ggplot2 GO_db GOstats graph GSEABase ismev jsonlite limma matrixStats org_Hs_eg_db RBGL reshape2 Rgraphviz vegan]; }; + MIMOSA = derive2 { name="MIMOSA"; version="1.32.0"; sha256="0c9wn8xp6n96nfjcgy7f5i9hx5gg3qhiclnswzpv9z4vyc1qy887"; depends=[Biobase coda data_table dplyr Formula ggplot2 MASS MCMCpack modeest plyr pracma Rcpp RcppArmadillo reshape rlang scales testthat tidyr]; }; + MIRA = derive2 { name="MIRA"; version="1.16.0"; sha256="0qxfpj1qqn1f9skiz392s2f96nvzc75a7axy0zzbbpds5cxmy11d"; depends=[Biobase BiocGenerics bsseq data_table GenomicRanges ggplot2 IRanges S4Vectors]; }; + MLInterfaces = derive2 { name="MLInterfaces"; version="1.74.0"; sha256="1nzy04fqwzb0ywiafgx3m3i2n1b0g4pcg8mlgh8yz5d3mmna4kag"; depends=[annotate Biobase BiocGenerics cluster fpc gbm gdata genefilter ggvis hwriter magrittr MASS mlbench pls RColorBrewer Rcpp rpart sfsmisc shiny threejs]; }; + MLP = derive2 { name="MLP"; version="1.42.0"; sha256="0giccwv7cw2cigcnpxv0bn5c3jca58032rl8yjkja8vv6gdgin3h"; depends=[AnnotationDbi gplots]; }; + MLSeq = derive2 { name="MLSeq"; version="2.12.0"; sha256="0z722cbbvkkfpzli47n9dhyj3n02gibffy1l06imwvzxcvahcfyj"; depends=[Biobase caret DESeq2 edgeR foreach ggplot2 limma pamr plyr sSeq SummarizedExperiment testthat VennDiagram xtable]; }; + MMAPPR2 = derive2 { name="MMAPPR2"; version="1.8.0"; sha256="1fl8dmbxr407f0vzv4q3jpaia28igzqxjb6azbck7zgn64wh5i3c"; depends=[Biobase BiocGenerics BiocParallel data_table dplyr ensemblVEP GenomeInfoDb GenomicRanges gmapR IRanges magrittr Rsamtools S4Vectors stringr tidyr VariantAnnotation VariantTools]; }; + MMDiff2 = derive2 { name="MMDiff2"; version="1.22.0"; sha256="1a74q87mlf1pvgy47gyncllsdz460iyk1nrh4m75jywhbxjf36z0"; depends=[Biobase Biostrings BSgenome GenomicRanges ggplot2 locfit RColorBrewer Rsamtools S4Vectors shiny]; }; + MMUPHin = derive2 { name="MMUPHin"; version="1.8.0"; sha256="00gi53nm19q1282lk435mvm908ldslfcqs70fbz69ysxp6a4qv9v"; depends=[cowplot dplyr fpc ggplot2 igraph Maaslin2 metafor tidyr]; }; + MODA = derive2 { name="MODA"; version="1.20.0"; sha256="00v40gsp1x5gbjg4ilnsjq1j512lwl3sbhqmavyxs20i8c8xjcqf"; depends=[AMOUNTAIN cluster dynamicTreeCut igraph RColorBrewer WGCNA]; }; + MOFA2 = derive2 { name="MOFA2"; version="1.4.0"; sha256="0vl2ffvh9nsdgw94yavkdkkhihpcb8fdbn3f19aygmwbfg78j3w9"; depends=[basilisk corrplot cowplot DelayedArray dplyr forcats ggplot2 ggrepel HDF5Array magrittr pheatmap RColorBrewer reshape2 reticulate rhdf5 Rtsne stringi tidyr uwot]; }; + MOGAMUN = derive2 { name="MOGAMUN"; version="1.4.0"; sha256="0jq863ql6ydykrbriw5h6ibinchkhsgxq8908gyg5f5jl2sgc8pc"; depends=[BiocParallel igraph RCy3 RUnit stringr]; }; + MOMA = derive2 { name="MOMA"; version="1.6.0"; sha256="1i7rngcclrwc4vmdywlz9yjmy37q0k898mcy8whnwx61lw4n3s8b"; depends=[circlize cluster ComplexHeatmap dplyr ggplot2 magrittr MKmisc MultiAssayExperiment qvalue RColorBrewer readr reshape2 rlang stringr tibble tidyr]; }; + MOSim = derive2 { name="MOSim"; version="1.8.0"; sha256="1mzyz45q3wcry18icardmjlrqzp1fjd8j614lrmz6as9c20jw8a1"; depends=[Biobase dplyr ggplot2 HiddenMarkov IRanges lazyeval matrixStats purrr rlang S4Vectors scales stringi stringr tibble tidyr zoo]; }; + MPFE = derive2 { name="MPFE"; version="1.30.0"; sha256="0v7s8ncji6cz8ffvyqyb6qkkrckncahig7p6ijvn917imsd3ac6j"; depends=[]; }; + MPRAnalyze = derive2 { name="MPRAnalyze"; version="1.12.0"; sha256="1iyczhmfd2wygnb3rmpy10v7w0l2whbs7cwg9axdd7s6gc8dkzfi"; depends=[BiocParallel progress SummarizedExperiment]; }; + MQmetrics = derive2 { name="MQmetrics"; version="1.2.0"; sha256="0d1mphilf3ibpql5i1nxb46kd64ks331wp4kbsdyfrqnlb8wfgfz"; depends=[cowplot dplyr ggforce gghalves ggplot2 ggpubr ggrepel ggridges gridExtra gtable knitr magrittr plyr purrr RColorBrewer readr reshape2 rlang rmarkdown scales stringr tidyr]; }; + MSGFgui = derive2 { name="MSGFgui"; version="1.28.0"; sha256="0dkj2nbv5xv4v4bbmf91av0ryh9pxdfp7fmbqlma4xyf1r7zmx4c"; depends=[MSGFplus mzID mzR shiny shinyFiles xlsx]; }; + MSGFplus = derive2 { name="MSGFplus"; version="1.28.0"; sha256="1k0qm049gk4gjhd88zhxxrpc944r7ndq8dys08ai2kbaqignvb7y"; depends=[mzID ProtGenerics]; }; + MSPrep = derive2 { name="MSPrep"; version="1.4.0"; sha256="0nkmmjzkdxizk2yv1ahgsp8zsr4jjazpzqqwcsx86dhrgf5jk5cz"; depends=[crmn ddpcr dplyr magrittr missForest pcaMethods preprocessCore rlang S4Vectors stringr SummarizedExperiment sva tibble tidyr VIM]; }; + MSnID = derive2 { name="MSnID"; version="1.28.0"; sha256="0dks5h3vp9ly8x24px2rl5blqicxybpxjnxvg2p1bwq8zvjkm38p"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics BiocStyle Biostrings data_table doParallel dplyr foreach ggplot2 iterators msmsTests MSnbase mzID mzR ProtGenerics purrr R_cache Rcpp reshape2 rlang RUnit stringr tibble xtable]; }; + MSnbase = derive2 { name="MSnbase"; version="2.20.0"; sha256="1r5igzb7xb5qcw37ffy0c3j6vlg9zffmksrc57rs1pmfnca773z5"; depends=[affy Biobase BiocGenerics BiocParallel digest ggplot2 impute IRanges lattice MALDIquant MASS MsCoreUtils mzID mzR pcaMethods plyr ProtGenerics Rcpp S4Vectors scales vsn XML]; }; + MSstats = derive2 { name="MSstats"; version="4.2.0"; sha256="1i36a0vhqb2sjllyh6ascfm5fbzf8awazbk1vjq5n8mh2cq72ri9"; depends=[checkmate data_table ggplot2 ggrepel gplots limma lme4 marray MASS MSstatsConvert preprocessCore Rcpp RcppArmadillo survival]; }; + MSstatsConvert = derive2 { name="MSstatsConvert"; version="1.4.0"; sha256="0p44g7kv2zyknmiki94w0v4zq1qpa2ly17hbfqkfy9c1xql7b38g"; depends=[checkmate data_table log4r stringi]; }; + MSstatsLOBD = derive2 { name="MSstatsLOBD"; version="1.2.0"; sha256="0d78hd9ip2amkj5pjmwy376qhzfd46wqmzl38rbm52d946c69sb8"; depends=[ggplot2 minpack_lm Rcpp]; }; + MSstatsLiP = derive2 { name="MSstatsLiP"; version="1.0.0"; sha256="1vf3f3yd9sgaqs9asq1x2819wkj2x68086g8hag1ln6q7q5j0xws"; depends=[Biostrings checkmate data_table dplyr factoextra ggplot2 ggpubr gridExtra MSstats MSstatsConvert MSstatsPTM purrr Rcpp scales stringr tibble tidyr tidyverse]; }; + MSstatsPTM = derive2 { name="MSstatsPTM"; version="1.4.0"; sha256="0sizx0001gh609fpi5ivq1pa49sprasbsh39kplcybcidq20qcj7"; depends=[Biostrings checkmate data_table dplyr ggplot2 ggrepel gridExtra MSstats MSstatsConvert MSstatsTMT Rcpp stringr]; }; + MSstatsQC = derive2 { name="MSstatsQC"; version="2.12.0"; sha256="087lr0maf5kpl642kvvkd9pyakqxy152rzhvrlaj0rxbrfqgxnsw"; depends=[dplyr ggExtra ggplot2 MSnbase plotly qcmetrics]; }; + MSstatsQCgui = derive2 { name="MSstatsQCgui"; version="1.14.0"; sha256="0ygw1zrq219grfy6h650icai9khx49fvdbby5cyydrqbp8m64w77"; depends=[dplyr ggExtra gridExtra MSstatsQC plotly shiny]; }; + MSstatsSampleSize = derive2 { name="MSstatsSampleSize"; version="1.8.0"; sha256="0ckdy0qy2s2rvh4ijdddkk9calf1s9s0hr52y0kpgr4mb5zrl0jp"; depends=[BiocParallel caret ggplot2 gridExtra MSstats reshape2]; }; + MSstatsTMT = derive2 { name="MSstatsTMT"; version="2.2.0"; sha256="0bx96v57lhr8mmvy30cpmbr3mc4ykqwjvqld5gvc01f0h79x8545"; depends=[checkmate data_table ggplot2 limma lme4 lmerTest MSstats MSstatsConvert]; }; MSstatsTMTPTM = derive2 { name="MSstatsTMTPTM"; version="1.1.2"; sha256="16qnddwhwhjjfr5akdrmp93gkxq2r41s82hb1blbz47lwbj5kaj5"; depends=[dplyr ggplot2 gridExtra MSstatsTMT Rcpp reshape2 stringr]; }; - MVCClass = derive2 { name="MVCClass"; version="1.66.0"; sha256="1di7y10mr7caacd6igwxnr62cm4v1x877yi4a2i5jqz1058jqni7"; depends=[]; }; - MWASTools = derive2 { name="MWASTools"; version="1.16.0"; sha256="1sj3z91ahqmw1ph0rpd7bh6chcqwy2c5zy64blhn9p227l8446vg"; depends=[boot car ComplexHeatmap ggplot2 glm2 gridExtra igraph KEGGgraph KEGGREST ppcor qvalue RCurl SummarizedExperiment]; }; - Maaslin2 = derive2 { name="Maaslin2"; version="1.6.0"; sha256="1fc0ch1pdnsq7mbc64l7c4a9mfia4ad3qgd868g34736vfvh8hqg"; depends=[biglm car chemometrics cplm data_table dplyr edgeR ggplot2 glmmTMB hash lmerTest logging lpsymphony MASS metagenomeSeq MuMIn optparse pbapply pcaPP pheatmap pscl robustbase vegan]; }; - MantelCorr = derive2 { name="MantelCorr"; version="1.62.0"; sha256="1l5hr5c1dq5xxpndr0xknw29hn32qh94b20f2nwbvyj2pqkrsl2v"; depends=[]; }; - MassArray = derive2 { name="MassArray"; version="1.44.0"; sha256="13fvd4q5wg523hfzf2329256sw9z4cdvfr8priph1jbr3rxy99ym"; depends=[]; }; - MassSpecWavelet = derive2 { name="MassSpecWavelet"; version="1.58.0"; sha256="1cs32sig1yvqn9xs0cvhfpmkh2lbllx7aab80sz58x03wnx8v60z"; depends=[waveslim]; }; - MatrixGenerics = derive2 { name="MatrixGenerics"; version="1.4.3"; sha256="1yir3rwhz5vf0pdn3fpvlc57c75k98gvv8gapajbvymz3lyghijv"; depends=[matrixStats]; }; - MatrixQCvis = derive2 { name="MatrixQCvis"; version="1.0.0"; sha256="1yn7jrkq2ill7hwv6432a5yv4xcr3fyj4hqsw0a4g7y2iqnp0sif"; depends=[ComplexHeatmap dplyr ggplot2 Hmisc htmlwidgets impute imputeLCMD limma openxlsx pcaMethods plotly proDA rlang rmarkdown Rtsne S4Vectors shiny shinydashboard shinyhelper shinyjs SummarizedExperiment tibble tidyr umap UpSetR vegan vsn]; }; - MatrixRider = derive2 { name="MatrixRider"; version="1.24.0"; sha256="0w7iiz3spps0dzdbf5xacwlbcwhgdxcjris7g0gffkzz7ij5ck27"; depends=[Biostrings IRanges S4Vectors TFBSTools XVector]; }; - MeSHDbi = derive2 { name="MeSHDbi"; version="1.28.0"; sha256="1aw7s3sr89w1sxj4wrnzj0hiigzk1arg0vq3790gnqrsy7sgips5"; depends=[AnnotationDbi Biobase BiocGenerics RSQLite]; }; - MeasurementError_cor = derive2 { name="MeasurementError.cor"; version="1.64.0"; sha256="1irdsjf3aj8i0ip9ciiv6wwq6j2lqfjsbz22r7qhjihy3ll2xj5x"; depends=[]; }; - Melissa = derive2 { name="Melissa"; version="1.8.0"; sha256="1j80nkhpnm16blpzw3m7x15hk119k9zdday8rypskqc246i4jljy"; depends=[assertthat BiocStyle BPRMeth cowplot data_table doParallel foreach GenomicRanges ggplot2 magrittr matrixcalc mclust MCMCpack mvtnorm ROCR truncnorm]; }; - Mergeomics = derive2 { name="Mergeomics"; version="1.20.0"; sha256="0iycnnjd1xsc9gygi9fa0nfpx8y9803x6pjwckfb0n4ssxg0mj6n"; depends=[]; }; - MesKit = derive2 { name="MesKit"; version="1.2.0"; sha256="14rzsfr33dn8zvvys75fxzsrk962y30j4ka5rmyrc1p7ck4wv8cw"; depends=[AnnotationDbi ape Biostrings circlize ComplexHeatmap cowplot data_table dplyr ggplot2 ggrepel ggridges IRanges mclust phangorn pracma RColorBrewer S4Vectors tidyr]; }; - MetCirc = derive2 { name="MetCirc"; version="1.22.0"; sha256="0dv9w449578hsjspgppwv02gvmvyg58q37vlbkss7awny0vafs9v"; depends=[amap circlize ggplot2 MSnbase S4Vectors scales shiny]; }; - MetID = derive2 { name="MetID"; version="1.10.0"; sha256="1hg0awdkg65g0gp4cfyr8i4afhqf9w4sc8bl28im7b1h7wrrrjvx"; depends=[ChemmineR devtools igraph Matrix stringr]; }; - MetNet = derive2 { name="MetNet"; version="1.10.0"; sha256="0svhn9lv9rr29wyywznsfk4mnqn90h162hkf8zrq8cz3h25pr2k9"; depends=[BiocParallel bnlearn dplyr GENIE3 ggplot2 Hmisc mpmi parmigene ppcor rlang S4Vectors sna stabs SummarizedExperiment tibble tidyr]; }; - MetaCyto = derive2 { name="MetaCyto"; version="1.14.0"; sha256="00kprxq4n691ng26yaygps4fkakaq9jfi9gkypl62xij6y4h1ws1"; depends=[cluster fastcluster flowCore FlowSOM ggplot2 metafor tidyr]; }; - MetaNeighbor = derive2 { name="MetaNeighbor"; version="1.12.0"; sha256="0gqlvnq7vdsggss93zbi95l8xgl47hhhlw7v4ygvb2p91b8id23k"; depends=[beanplot dplyr ggplot2 gplots igraph Matrix matrixStats RColorBrewer SingleCellExperiment SummarizedExperiment tibble tidyr]; }; - MetaVolcanoR = derive2 { name="MetaVolcanoR"; version="1.6.0"; sha256="0xdlg7r1prjp1qvvl01ga2sn4r6br5h8zaigyyiq5xc3v5nm85cb"; depends=[cowplot data_table dplyr ggplot2 htmlwidgets metafor metap plotly rlang tidyr topconfects]; }; - Metab = derive2 { name="Metab"; version="1.26.0"; sha256="01w9zw7g0yyky7n449pirah8aid0dqkp2vkzh087324qd8k3wifd"; depends=[pander svDialogs xcms]; }; - MetaboCoreUtils = derive2 { name="MetaboCoreUtils"; version="1.0.0"; sha256="1i09mhlx9vld7akcc0bbipqbjk6clzza1szr5hgpn3iwda2c06qw"; depends=[stringr]; }; - MetaboSignal = derive2 { name="MetaboSignal"; version="1.22.0"; sha256="0d9wfg1ip5pldm8ywh4djgjp9m3xc9m7m1wrxyi3j8zfrcsg9b13"; depends=[AnnotationDbi biomaRt EnsDb_Hsapiens_v75 hpar igraph KEGGgraph KEGGREST MWASTools mygene org_Hs_eg_db RCurl]; }; - MethCP = derive2 { name="MethCP"; version="1.6.0"; sha256="17mncz62pncq4zx524iib61nwyw3gw97mqbnn46zq9s4q100qada"; depends=[BiocParallel bsseq DNAcopy DSS GenomeInfoDb GenomicRanges IRanges methylKit S4Vectors]; }; - MethPed = derive2 { name="MethPed"; version="1.20.0"; sha256="177hmyb0r8yqlihhh8g2haaia29qwxqynj20ckmkbpixs3v37qql"; depends=[Biobase randomForest]; }; - MethReg = derive2 { name="MethReg"; version="1.2.1"; sha256="0q6blwrxyykd1zz83vhsr7yij8c8qf654wrgg3vkliyl8l2j0zss"; depends=[DelayedArray dplyr GenomicRanges ggplot2 ggpubr IRanges MASS Matrix plyr progress pscl readr rlang S4Vectors sesameData sfsmisc stringr SummarizedExperiment tibble tidyr]; }; - MethTargetedNGS = derive2 { name="MethTargetedNGS"; version="1.24.0"; sha256="02ii6ibjlwp4kf2xqlsrqvcq52anc5nwnf0y6nldf150grjinpwh"; depends=[Biostrings gplots seqinr stringr]; }; - MethylAid = derive2 { name="MethylAid"; version="1.26.0"; sha256="0b6k79dv4n009jrzisqd7fq9mkr9r79krgnp8q7nmk88vq1fz4hv"; depends=[Biobase BiocGenerics BiocParallel ggplot2 gridBase hexbin matrixStats minfi RColorBrewer shiny SummarizedExperiment]; }; - MethylMix = derive2 { name="MethylMix"; version="2.22.0"; sha256="0aw3jhmwsv8kk650kiwqsyb0agz07fi1kbp06wk3drd06gkswpwk"; depends=[data_table digest foreach ggplot2 impute limma R_matlab RColorBrewer RCurl RPMM]; }; - MethylSeekR = derive2 { name="MethylSeekR"; version="1.32.0"; sha256="0niybbcpny381qwip47i12dhp6zz4x4ayzwj3rvn4lsg63yqn9ml"; depends=[BSgenome geneplotter GenomicRanges IRanges mhsmm rtracklayer]; }; - Mfuzz = derive2 { name="Mfuzz"; version="2.52.0"; sha256="0njjln3w5nqrpi5ml2v16dhn7d3mr0nglbsy0grnxcld7z8h34yb"; depends=[Biobase e1071 tkWidgets]; }; - MiChip = derive2 { name="MiChip"; version="1.46.0"; sha256="10i7bq9qcwvhy7mh47zk9105837p68zd7cidl9pss6l6h03rszfm"; depends=[Biobase]; }; - MiPP = derive2 { name="MiPP"; version="1.64.0"; sha256="0g8vlbcwy7djfpgg3483hw65a6g472z7h329vqsrfk782i4wzglr"; depends=[Biobase e1071 MASS]; }; - MiRaGE = derive2 { name="MiRaGE"; version="1.34.0"; sha256="19y8kyirm0pzvv6p3dsnn9zws189anw5a2h2aiivgh6y6jis8g57"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager S4Vectors]; }; - MicrobiotaProcess = derive2 { name="MicrobiotaProcess"; version="1.4.4"; sha256="0r8z2vjj32zblzhk2dyx2na3z35fzxf3lgrnb97vz4l5navgmghp"; depends=[ape Biostrings coin dplyr foreach ggplot2 ggrepel ggsignif ggstar ggtree magrittr MASS patchwork rlang SummarizedExperiment tibble tidyr tidyselect tidytree treeio vegan zoo]; }; - MineICA = derive2 { name="MineICA"; version="1.32.0"; sha256="1cpy8fpfff0k0s4qxmis6351nk1v507a2jszg3hhw3aacbpm7gqp"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt cluster colorspace fastICA foreach fpc ggplot2 GOstats graph gtools Hmisc igraph JADE lumi lumiHumanAll_db marray mclust plyr RColorBrewer Rgraphviz scales xtable]; }; - MinimumDistance = derive2 { name="MinimumDistance"; version="1.36.0"; sha256="0jp2icr0z56d3phickr3dhgkmiapfl7z93mipzc7ll139m3ayzj8"; depends=[Biobase BiocGenerics data_table DNAcopy ff foreach GenomeInfoDb GenomicRanges IRanges lattice MatrixGenerics matrixStats oligoClasses S4Vectors SummarizedExperiment VanillaICE]; }; - ModCon = derive2 { name="ModCon"; version="1.0.0"; sha256="1qd1545w6jgpd4xnqwbhv10yzn70lc3hslqr56gg30mc7p8qbkh8"; depends=[data_table]; }; - Modstrings = derive2 { name="Modstrings"; version="1.8.0"; sha256="1n8zhzh6zzamac2ss7wd2plbl1xcl0n8pvarljn6irai5cpigfl4"; depends=[BiocGenerics Biostrings crayon GenomicRanges IRanges S4Vectors stringi stringr XVector]; }; - MoonlightR = derive2 { name="MoonlightR"; version="1.18.0"; sha256="1mx97ym3l351gzfb12z4dmp7mc6wc4cqisbr9f10hnk7x303cbax"; depends=[Biobase circlize clusterProfiler doParallel DOSE foreach GEOquery gplots HiveR limma parmigene randomForest RColorBrewer RISmed SummarizedExperiment TCGAbiolinks]; }; - MotifDb = derive2 { name="MotifDb"; version="1.34.0"; sha256="04cmgg5mw1cqbg95zyfc2imykmdxyff16w26rq97xghcxwiq2b3z"; depends=[BiocGenerics Biostrings GenomicRanges IRanges rtracklayer S4Vectors splitstackshape]; }; - MsBackendMassbank = derive2 { name="MsBackendMassbank"; version="1.0.0"; sha256="0wa1dzymkpjrh12p4d1vaw1rfy1rnm8hl18gb1q5qmw3c1qaniqn"; depends=[BiocParallel DBI IRanges MsCoreUtils ProtGenerics S4Vectors Spectra]; }; - MsBackendMgf = derive2 { name="MsBackendMgf"; version="1.0.0"; sha256="1d3x433js5ppypc312124g7i5h6mx94axlq8h8acqvgdd3pd4yqx"; depends=[BiocParallel IRanges MsCoreUtils S4Vectors Spectra]; }; - MsCoreUtils = derive2 { name="MsCoreUtils"; version="1.4.0"; sha256="13g8a726vsyjs6m1kd42vf8avdnmhykxhl6z3j2njzkp2jg17pd8"; depends=[clue MASS Rcpp S4Vectors]; }; - MsFeatures = derive2 { name="MsFeatures"; version="1.0.0"; sha256="0i5xdhii7ls72xb5nkjimdka77rb7m3arz5z0ndc6kflhr6b0cbn"; depends=[MsCoreUtils ProtGenerics SummarizedExperiment]; }; - Mulcom = derive2 { name="Mulcom"; version="1.42.0"; sha256="0law2r7hf22jm8029s8yw1b03dmh3grpnjsp7gkavrmp5355rm9m"; depends=[Biobase fields]; }; - MultiAssayExperiment = derive2 { name="MultiAssayExperiment"; version="1.18.0"; sha256="0l0arf3q1f6zy6pdgsy3h5n523sg1hlilv7lj7snr5814idgdj51"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors SummarizedExperiment tidyr]; }; - MultiBaC = derive2 { name="MultiBaC"; version="1.2.0"; sha256="0c6vah8396vklwk8sqg3rapifaz0f527w5jw2ddpz2nmmnigy2b8"; depends=[ggplot2 Matrix MultiAssayExperiment ropls]; }; - MultiDataSet = derive2 { name="MultiDataSet"; version="1.20.2"; sha256="06wcncz10jm54g0m9yk2314lg8x666p5r4zhi57sp2p50cj1lvnz"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 ggrepel IRanges limma qqman S4Vectors SummarizedExperiment]; }; - MultiMed = derive2 { name="MultiMed"; version="2.14.0"; sha256="1s23gf8vvi76k4z7qvw3zvfjqs0w5rg3lijfs8b4z23nphadv4gg"; depends=[]; }; - MungeSumstats = derive2 { name="MungeSumstats"; version="1.0.1"; sha256="1l9j0b3j6n4fi5c657h958kz88fzlcq5r7vfx9xhpy5y9di319k7"; depends=[Biostrings BSgenome data_table GenomicRanges]; }; - MutationalPatterns = derive2 { name="MutationalPatterns"; version="3.2.0"; sha256="0433i4xbz8hrfaj8fxgzps3x8dqrl5vgwzg7qmp4cy5sb1lw5wvs"; depends=[BiocGenerics Biostrings BSgenome cowplot dplyr GenomeInfoDb GenomicRanges ggalluvial ggdendro ggplot2 IRanges magrittr NMF pracma purrr S4Vectors stringr tibble tidyr VariantAnnotation]; }; - NADfinder = derive2 { name="NADfinder"; version="1.16.0"; sha256="19ikqix98ag7nqjjnhhrnsi89g4k3cxcqw3cwph91p1pcg3h5w3p"; depends=[ATACseqQC baseline BiocGenerics corrplot csaw EmpiricalBrownsMethod GenomeInfoDb GenomicAlignments GenomicRanges IRanges limma metap Rsamtools rtracklayer S4Vectors signal SummarizedExperiment trackViewer]; }; - NBAMSeq = derive2 { name="NBAMSeq"; version="1.8.0"; sha256="05cqdrp5b7mad625ab43pdv5dkpgxd0q8g0r201066g0nrhzpxqg"; depends=[BiocParallel DESeq2 genefilter mgcv S4Vectors SummarizedExperiment]; }; - NBSplice = derive2 { name="NBSplice"; version="1.10.0"; sha256="1qspsqmvyv5nw3f0zzp2vffy82ld9lbix2wp6cci99m4jvvwdp14"; depends=[BiocParallel car edgeR ggplot2 MASS mppa reshape2]; }; - NCIgraph = derive2 { name="NCIgraph"; version="1.40.0"; sha256="0w517l2v6aqn9m2malmv482ydjw94sblrzwzfqfsh2lbyaxhbz8c"; depends=[graph KEGGgraph R_methodsS3 RBGL RCy3]; }; - NOISeq = derive2 { name="NOISeq"; version="2.36.0"; sha256="18d51dv2ygsm7kkwal341f1wrwrazyns0045j00vld367kic8jiz"; depends=[Biobase Matrix]; }; - NPARC = derive2 { name="NPARC"; version="1.4.0"; sha256="0s4mwv7pcxn79vivhysmyvg3vvqaf6snij1rsvj97lfrpn25zh9y"; depends=[BiocParallel broom dplyr magrittr MASS rlang tidyr]; }; - NTW = derive2 { name="NTW"; version="1.42.0"; sha256="0q9kkrxn7bp9a5phhrg266cybxqbj5gqlbri9w9r91c91r95dxxg"; depends=[mvtnorm]; }; - NanoMethViz = derive2 { name="NanoMethViz"; version="1.2.0"; sha256="0gqis6n9wsxp127yvdfwm355iq7zfww1p0p3x1idhy75hmi08zpy"; depends=[AnnotationDbi assertthat bsseq cpp11 data_table dplyr e1071 forcats fs GenomicRanges ggplot2 ggthemes glue patchwork purrr Rcpp readr rlang Rsamtools RSQLite S4Vectors scales stringr SummarizedExperiment tibble tidyr withr zlibbioc]; }; - NanoStringDiff = derive2 { name="NanoStringDiff"; version="1.22.0"; sha256="0qafspf90ydxrpm7rniyqwcz64lk91yxjdmq6ilnkxdixdmcnkvs"; depends=[Biobase matrixStats Rcpp]; }; - NanoStringNCTools = derive2 { name="NanoStringNCTools"; version="1.0.0"; sha256="1j0mnlhcklp9bmgd63b2nafnbglivdrjf9l1f3nfaagl4g3dkqll"; depends=[Biobase BiocGenerics Biostrings ggbeeswarm ggiraph ggplot2 ggthemes IRanges pheatmap RColorBrewer S4Vectors]; }; - NanoStringQCPro = derive2 { name="NanoStringQCPro"; version="1.24.0"; sha256="0snkhb3krgl82ymbjqjbhavi38ipffvbrwr9w7j5qqlw0hhsa2dg"; depends=[AnnotationDbi Biobase knitr NMF org_Hs_eg_db png RColorBrewer]; }; - Nebulosa = derive2 { name="Nebulosa"; version="1.2.0"; sha256="1l0hyb6gam83bmbjsx4zdvrwv434j4qnm1a9n91m6zqip0zaxmxc"; depends=[ggplot2 ks Matrix patchwork Seurat SingleCellExperiment SummarizedExperiment]; }; - NeighborNet = derive2 { name="NeighborNet"; version="1.10.0"; sha256="12d7drs7i66wbw75xsbmgada9p7zx6v4k7m8pym6ha4h52f22yd3"; depends=[graph]; }; - NetPathMiner = derive2 { name="NetPathMiner"; version="1.28.0"; sha256="17537qyh6bj82marikc2sfd79xkgfvh53y44raafjk2xxv1sbsc8"; depends=[igraph]; }; - NetSAM = derive2 { name="NetSAM"; version="1.32.0"; sha256="1am52sa4v6b7zng03a403g66775n5sn1gcgfjk7s1q808n1bivaq"; depends=[AnnotationDbi biomaRt DBI doParallel foreach GO_db igraph R2HTML seriation survival WGCNA]; }; - NewWave = derive2 { name="NewWave"; version="1.2.0"; sha256="1f7n8lmkdwdr2pb9fgma9lvqn47bawnzr841gaaxyy1ww38dw512"; depends=[BiocSingular DelayedArray irlba Matrix SharedObject SingleCellExperiment SummarizedExperiment]; }; - NoRCE = derive2 { name="NoRCE"; version="1.4.0"; sha256="049vn903knz8fj6vbmlyvmxv5gi2v4v6ppv6w9xvi2gy6rpv32v4"; depends=[AnnotationDbi biomaRt DBI dbplyr dplyr GenomicFeatures GenomicRanges ggplot2 GO_db igraph IRanges KEGGREST png RCurl reactome_db readr reshape2 RSQLite rtracklayer rWikiPathways S4Vectors SummarizedExperiment tidyr zlibbioc]; }; - NormalyzerDE = derive2 { name="NormalyzerDE"; version="1.10.0"; sha256="06dcssa9cmcj5wgbhi2p30cva8g5n623b1qab5vfxh7vkyz8g6xj"; depends=[ape Biobase car ggforce ggplot2 limma MASS matrixStats preprocessCore raster RcmdrMisc SummarizedExperiment vsn]; }; - NormqPCR = derive2 { name="NormqPCR"; version="1.38.0"; sha256="0sni1dghasdk9ankfi613fl71iiy3kzr51f9nclvvnc3vz4mg3hk"; depends=[Biobase qpcR RColorBrewer ReadqPCR]; }; - NuPoP = derive2 { name="NuPoP"; version="2.0.0"; sha256="1hmqan1c88b0q150w3nlh7l1wgvfxdgdv8m1bxwcn4a9bvjhqsdy"; depends=[]; }; - OCplus = derive2 { name="OCplus"; version="1.66.0"; sha256="06j9caaajvxj21m11pigm3lkd0s0adzaxpbv4v24im7nfvk0cv1g"; depends=[akima multtest]; }; - OLIN = derive2 { name="OLIN"; version="1.70.0"; sha256="090frrifpzygswdk2g11x0klhxb2w6hprlc4qmv3l40fvv7fb5aa"; depends=[limma locfit marray]; }; - OLINgui = derive2 { name="OLINgui"; version="1.66.0"; sha256="14bm1kcbssh4i1kwbd4qdkyspdq7bbar30xcb7a4826fx03j07hv"; depends=[marray OLIN tkWidgets widgetTools]; }; - OMICsPCA = derive2 { name="OMICsPCA"; version="1.10.0"; sha256="1r26pj3rlk211581ddyfga1ghja11x4jy60kdwqzl74gnrjh8nvb"; depends=[cluster clValid corrplot cowplot data_table factoextra FactoMineR fpc GenomeInfoDb ggplot2 HelloRanges IRanges kableExtra magick MASS MultiAssayExperiment NbClust OMICsPCAdata pdftools PerformanceAnalytics reshape2 rgl rmarkdown rtracklayer tidyr]; }; - OPWeight = derive2 { name="OPWeight"; version="1.14.0"; sha256="1d3bp3l77335idc3yd9dz1zadby05w46bws835ga7vc824rd08p5"; depends=[MASS qvalue tibble]; }; - ORFhunteR = derive2 { name="ORFhunteR"; version="1.0.0"; sha256="0y4xpzma0lz8qaqr538spwahyis753l6nvdqm4cmynvahkxdqxdj"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg38 data_table Peptides randomForest Rcpp rtracklayer stringr xfun]; }; - ORFik = derive2 { name="ORFik"; version="1.12.13"; sha256="0bg6bxrjj8y8464k5238h3rp2cqld6gxhcgc698bip483wl9kbbx"; depends=[AnnotationDbi BiocGenerics BiocParallel biomartr Biostrings BSgenome cowplot data_table DESeq2 fst GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GGally ggplot2 gridExtra httr IRanges R_utils Rcpp Rsamtools rtracklayer S4Vectors SummarizedExperiment xml2]; }; - OSAT = derive2 { name="OSAT"; version="1.40.0"; sha256="1carfhb447z696mxb48b99mqr1lh7zr3gkyq7myajbxjym6a51kf"; depends=[]; }; - OTUbase = derive2 { name="OTUbase"; version="1.42.0"; sha256="1yg376iab78blb8qv4d5hq2mb7va4ir3vp8jrl7a8dqcqvgjm8w0"; depends=[Biobase Biostrings IRanges S4Vectors ShortRead vegan]; }; - OUTRIDER = derive2 { name="OUTRIDER"; version="1.10.0"; sha256="1vvc2w9c31z67khy85i1r8jjhpbkb0vcxwax2lr84rp314b09021"; depends=[BBmisc BiocGenerics BiocParallel data_table DESeq2 generics GenomicFeatures GenomicRanges ggplot2 heatmaply IRanges matrixStats pcaMethods pheatmap plotly plyr PRROC RColorBrewer Rcpp RcppArmadillo reshape2 S4Vectors scales SummarizedExperiment]; }; - OVESEG = derive2 { name="OVESEG"; version="1.8.0"; sha256="0v7279ycirsmv0arqqjb1rn5wxcmxmd35dncxxxsfgn734z4vm8l"; depends=[BiocParallel fdrtool limma Rcpp SummarizedExperiment]; }; - OmaDB = derive2 { name="OmaDB"; version="2.8.0"; sha256="0h7df541pr46ayc2gvv3c49lhmgksimghid71qw5xxn122zgp8sa"; depends=[ape Biostrings GenomicRanges httr IRanges jsonlite plyr topGO]; }; - OmicCircos = derive2 { name="OmicCircos"; version="1.30.0"; sha256="1agdy155nk7a4v53whw1fvljsb8gnhvypgjd5w43c41dshhhpc6w"; depends=[GenomicRanges]; }; - OmicsLonDA = derive2 { name="OmicsLonDA"; version="1.8.0"; sha256="1fj7jrczn9rjriw3dbnmsh25bzh7ng9pi8rcdy664xwkm8n840gc"; depends=[BiocGenerics BiocParallel ggplot2 gss plyr pracma SummarizedExperiment zoo]; }; - Omixer = derive2 { name="Omixer"; version="1.2.4"; sha256="1bkyr50nq6vjp2xpyi1915xa93y1ih54m1p2dsjvcnjvd52zfngp"; depends=[dplyr forcats ggplot2 gridExtra magrittr RColorBrewer readr stringr tibble tidyselect]; }; - OmnipathR = derive2 { name="OmnipathR"; version="3.0.4"; sha256="0rbq3h3cp5dgpy5ifmbnfm6z8w4jv45wjzyl1f4qacgrbyf2l30a"; depends=[checkmate curl digest dplyr httr igraph jsonlite later logger magrittr progress purrr rappdirs readr readxl rlang stringr tibble tidyr tidyselect xml2 yaml]; }; - OncoScore = derive2 { name="OncoScore"; version="1.20.0"; sha256="1765pvqikvckgzajjsa5f0y5fiwyvi3syxafawl765bph83n9f99"; depends=[biomaRt]; }; - OncoSimulR = derive2 { name="OncoSimulR"; version="3.0.0"; sha256="1nsyqs4ai6nrsydi8cw7cxalf7pjzfdafdqx6ga91gyfbj4pv55k"; depends=[car data_table dplyr ggplot2 ggrepel graph gtools igraph RColorBrewer Rcpp Rgraphviz smatr stringr]; }; - OpenStats = derive2 { name="OpenStats"; version="1.4.0"; sha256="0yl1bsbjfaghp06zslainr2j0lzzlcm8s173qfw1xmmg6lql9l9i"; depends=[AICcmodavg car Hmisc jsonlite knitr MASS nlme rlist summarytools]; }; - OrderedList = derive2 { name="OrderedList"; version="1.64.0"; sha256="1x0py5fsxwgmzwjwl0xgkkqrly8fkjb44syb7nn6nwpba3hglllv"; depends=[Biobase twilight]; }; - Organism_dplyr = derive2 { name="Organism.dplyr"; version="1.20.0"; sha256="1md15zvr0bli38kb42c319f1b29iwnl5la3zhyim6yab5vrwa1sp"; depends=[AnnotationDbi AnnotationFilter BiocFileCache DBI dbplyr dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges rlang RSQLite S4Vectors tibble]; }; - OrganismDbi = derive2 { name="OrganismDbi"; version="1.34.0"; sha256="0p8ccpdchdwci4kv9y07wdadzgms8nipvg6rm1rll35jcflnnkxi"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager DBI GenomicFeatures GenomicRanges graph IRanges RBGL S4Vectors]; }; - Oscope = derive2 { name="Oscope"; version="1.22.0"; sha256="0h70k69dicimrkxirx0lfnipd9l965ngx2xxswwx1nlgdwbfhhij"; depends=[BiocParallel cluster EBSeq testthat]; }; - PAA = derive2 { name="PAA"; version="1.26.0"; sha256="1cbfwn48c45rrhay94zxyqhf4vcz0z1xcww0fbl6dm90nfvb95d1"; depends=[e1071 gplots gtools limma MASS mRMRe randomForest Rcpp ROCR sva]; }; - PADOG = derive2 { name="PADOG"; version="1.34.0"; sha256="1wz3vhqc3v4a08bi7f2z82rncpvfagknhsibrpd88nb7h44nzs1k"; depends=[AnnotationDbi Biobase doRNG foreach GSA hgu133a_db hgu133plus2_db KEGGdzPathwaysGEO KEGGREST limma nlme]; }; - PAIRADISE = derive2 { name="PAIRADISE"; version="1.8.0"; sha256="1l45ir8zgf0xmmbz1bmqlpawz60dq4s9h8c0c4vnzf338vfbvhdy"; depends=[abind BiocParallel nloptr S4Vectors SummarizedExperiment]; }; - PANR = derive2 { name="PANR"; version="1.38.0"; sha256="05w82fdzqr0p54cmqy0plyav87di4dc2gkwpnvvxz774z69ms03b"; depends=[igraph MASS pvclust RedeR]; }; - PAST = derive2 { name="PAST"; version="1.8.0"; sha256="0qswxk7dwmchc0drd4yk7k1034w2yb79mycpnsp15np7dfffkk41"; depends=[doParallel dplyr foreach GenomicRanges ggplot2 iterators qvalue rlang rtracklayer S4Vectors]; }; - PCAN = derive2 { name="PCAN"; version="1.20.0"; sha256="1yszrk7qcvs9nrk0mqwsjxchpny7xjpq8gh606a41lvf94aznfsr"; depends=[BiocParallel]; }; - PCAtools = derive2 { name="PCAtools"; version="2.4.0"; sha256="11idi9fwvyhkakbm63qxcdhkany8gbskis04z0p5a39lppq8ks31"; depends=[beachmat BH BiocParallel BiocSingular cowplot DelayedArray DelayedMatrixStats dqrng ggplot2 ggrepel lattice Matrix Rcpp reshape2]; }; - PDATK = derive2 { name="PDATK"; version="1.0.2"; sha256="03dwa6yndshv0wvvvnvn0g84xygx7hs487kcx0gajrsrmlrd8rxq"; depends=[BiocGenerics BiocParallel caret clusterRepro ConsensusClusterPlus CoreGx data_table dplyr genefu ggplot2 ggplotify igraph MatrixGenerics matrixStats MultiAssayExperiment piano plyr pROC RColorBrewer reportROC rlang S4Vectors scales SummarizedExperiment survcomp survival survminer switchBox verification]; }; - PECA = derive2 { name="PECA"; version="1.28.0"; sha256="0sgf934xyyb368x9a0wl17dq3hfcdiz2sk3j0j89a4l56lviaip8"; depends=[affy aroma_affymetrix aroma_core genefilter limma preprocessCore ROTS]; }; - PERFect = derive2 { name="PERFect"; version="1.6.0"; sha256="01jdyl4n50izhr89rvyvp25b11hcm9x3ap2qddbrhk019csp8zax"; depends=[fitdistrplus ggplot2 Matrix phyloseq psych sn zoo]; }; - PFP = derive2 { name="PFP"; version="1.0.0"; sha256="120vbhincw2kzcark6i47pnkyzhniv5pr2qq29x3nmap8k9yh121"; depends=[clusterProfiler ggplot2 graph igraph KEGGgraph magrittr plyr tidyr]; }; - PICS = derive2 { name="PICS"; version="2.36.0"; sha256="0w86s998515icvr7xk3dr2kgnsima4lgwh2gi5g6zp5c3g1lmhjp"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools]; }; - PING = derive2 { name="PING"; version="2.36.0"; sha256="1ncrm9f8xjv7fs6dq81i8zd40d4wlkaah18g2s1x98wpkzrz93hr"; depends=[BiocGenerics BSgenome fda GenomicRanges Gviz IRanges PICS S4Vectors]; }; - PLPE = derive2 { name="PLPE"; version="1.52.0"; sha256="1gwjlrfpav1x5lbhkni6qjinafsf6rdr2c820smld7iqlms404fr"; depends=[Biobase LPE MASS]; }; - POMA = derive2 { name="POMA"; version="1.2.0"; sha256="1qqg1ijivjfyr0bjmjq43m7yngllcla2z0kf4jx08jk8h6jwkhbn"; depends=[broom caret clisymbols ComplexHeatmap crayon dplyr e1071 ggcorrplot ggplot2 ggraph ggrepel glasso glmnet impute knitr limma magrittr mixOmics MSnbase patchwork qpdf randomForest RankProd rmarkdown tibble tidyr vegan]; }; - POWSC = derive2 { name="POWSC"; version="1.0.0"; sha256="043nad76fd97wx4hlspj5i2a18h2ycy1cvxzhg1lnyihnzqbbnd9"; depends=[Biobase ggplot2 limma MAST pheatmap RColorBrewer SingleCellExperiment SummarizedExperiment]; }; - PPInfer = derive2 { name="PPInfer"; version="1.18.0"; sha256="008f1k4z1kp2w82ck21knrgg4jam6s0ff3ia8zzfjcx9cq3gi0f7"; depends=[biomaRt fgsea ggplot2 igraph kernlab STRINGdb yeastExpData]; }; - PREDA = derive2 { name="PREDA"; version="1.38.0"; sha256="1yv3x68icjyzkxws1k4d0858089anm226vapl5mgi61s4czakl5d"; depends=[annotate Biobase lokern multtest]; }; - PROMISE = derive2 { name="PROMISE"; version="1.44.0"; sha256="06108wmzic9nfl0wk3jkrzvkikmsk3mpahy9563h29868a3ainw4"; depends=[Biobase GSEABase]; }; - PROPER = derive2 { name="PROPER"; version="1.24.0"; sha256="14d7m27plrj2v1w807gx7i0r1m90nj87xz43yvlrlazljg1lriw7"; depends=[edgeR]; }; - PROPS = derive2 { name="PROPS"; version="1.14.0"; sha256="0nmgnb1ckf31avm007qkkhmlirahki6gp7gvlsjygpmf8yc7y8lq"; depends=[Biobase bnlearn reshape2 sva]; }; - PROcess = derive2 { name="PROcess"; version="1.68.0"; sha256="1rcnryml9ab1lbxgs282q1mavs6jj8wqjb97zqc8hnjh02w0g8yd"; depends=[Icens]; }; - PSEA = derive2 { name="PSEA"; version="1.26.0"; sha256="0nz8i0d7z2bdy216dkp0zsyid0r6lssj751sq2h0fk7xvj97ablc"; depends=[Biobase MASS]; }; - PSICQUIC = derive2 { name="PSICQUIC"; version="1.30.0"; sha256="1gsh4sjs5k1kzwnywc3vxagvgwb6qzadgrcj4xszdd7pk06vd8dj"; depends=[BiocGenerics biomaRt httr IRanges plyr RCurl]; }; - PWMEnrich = derive2 { name="PWMEnrich"; version="4.28.1"; sha256="137yxm3i0kpl05lldp8d57vmhyj664pxc2cimdqdy4v5n8asw764"; depends=[BiocGenerics Biostrings evd gdata S4Vectors seqLogo]; }; - PanVizGenerator = derive2 { name="PanVizGenerator"; version="1.20.0"; sha256="02gqy5d4m23ac8djy6ximbk383721470finyw8gc8ndjb7ppq73i"; depends=[FindMyFriends igraph jsonlite pcaMethods shiny]; }; - Path2PPI = derive2 { name="Path2PPI"; version="1.22.0"; sha256="1klxm9y73amcan6lr2vhjg5iia3jqai2vb9kg43rl4b7yd746wlg"; depends=[igraph]; }; - PathNet = derive2 { name="PathNet"; version="1.32.0"; sha256="05qqcpr51bc8hz4073760pwm1742mfixm2dlpk56xa0b589l7clc"; depends=[]; }; - PathoStat = derive2 { name="PathoStat"; version="1.18.0"; sha256="1zg3vwnxnsm0fmhiskg7zmfmfs100n56g1cv6lrz2dgf3860119c"; depends=[ape BiocStyle ComplexHeatmap corpcor DESeq2 devtools dplyr DT edgeR ggplot2 glmnet gmodels knitr limma matrixStats phyloseq plotly plyr RColorBrewer rentrez reshape2 ROCR scales shiny shinyjs tidyr vegan webshot XML]; }; - PeacoQC = derive2 { name="PeacoQC"; version="1.2.0"; sha256="0l065ij2fh6qqhlfpr6cqv9pqlrjamppfrv7gbdkj5z1sh75np6b"; depends=[circlize ComplexHeatmap flowCore flowWorkspace ggplot2 gridExtra plyr]; }; - PepsNMR = derive2 { name="PepsNMR"; version="1.10.1"; sha256="0amx3fdxn1b1n3j37hgj9lpnxffvk6mlqn9k9kjhf1qsbhafx2m7"; depends=[ggplot2 gridExtra Matrix matrixStats ptw reshape2]; }; - PhIPData = derive2 { name="PhIPData"; version="1.0.0"; sha256="0ly3wqqiiizsfdcsb5jcd1pzh9b5mb5241qq7rz3pqrsgncxrax9"; depends=[BiocGenerics cli edgeR GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; - PharmacoGx = derive2 { name="PharmacoGx"; version="2.4.0"; sha256="1krvfadlzari9icyqr1y8zjhf9wpa0a6pavqjfwz3i7878wj35g7"; depends=[Biobase BiocGenerics BiocParallel caTools CoreGx data_table downloader ggplot2 glue jsonlite magicaxis MultiAssayExperiment RColorBrewer reshape2 S4Vectors SummarizedExperiment]; }; - PhenStat = derive2 { name="PhenStat"; version="2.28.0"; sha256="056w1n6q0j0w7lnny4s87picxcbx2wzbpdmq88crgbg4z4mpfl2p"; depends=[car corrplot ggplot2 graph knitr lme4 logistf MASS msgps nlme nortest pingr reshape SmoothWin]; }; - PhenoGeneRanker = derive2 { name="PhenoGeneRanker"; version="1.0.0"; sha256="01zxscbmb4cj576avzkc7s7kmsr9f9m3wx7hp32bns8d5jlsaxji"; depends=[doParallel dplyr foreach igraph Matrix]; }; - PhosR = derive2 { name="PhosR"; version="1.2.0"; sha256="1fravmg690is1lqp2afzg22ywycx0p2sqp6hw97s51phyw5f82vn"; depends=[BiocGenerics circlize dendextend dplyr e1071 GGally ggdendro ggplot2 ggpubr ggtext igraph limma network pcaMethods pheatmap preprocessCore RColorBrewer reshape2 rlang ruv S4Vectors SummarizedExperiment tidyr]; }; - PhyloProfile = derive2 { name="PhyloProfile"; version="1.6.6"; sha256="0jabsrjzlgw38mm0qmwfa7zygpl9fir3gyn0r75dyvrbz7z3psc2"; depends=[ape BiocStyle bioDist Biostrings colourpicker data_table DT energy ExperimentHub ggplot2 gridExtra OmaDB pbapply plyr RColorBrewer RCurl shiny shinyBS shinyjs xml2 zoo]; }; - Pi = derive2 { name="Pi"; version="2.4.0"; sha256="1k0i2jw216k6vbjda4d500whzhdagssci1030ywh5d9fg6z9zm37"; depends=[BiocGenerics caret dnet dplyr GenomeInfoDb GenomicRanges ggnetwork ggplot2 ggrepel glmnet igraph IRanges lattice MASS Matrix osfr plot3D purrr randomForest RCircos readr ROCR scales supraHex tibble tidyr]; }; - Pigengene = derive2 { name="Pigengene"; version="1.18.10"; sha256="1khkx7p11k11bays33zbv34mppgp02yxhhsg48kjvq9zg7rqq52a"; depends=[BiocStyle bnlearn C50 dplyr gdata GO_db graph impute MASS matrixStats partykit pheatmap preprocessCore Rgraphviz WGCNA]; }; - PloGO2 = derive2 { name="PloGO2"; version="1.4.0"; sha256="13ilmsy24j3p9f3addz1i9fwscra47rgq4j7ndz46d1h2rd3rdvy"; depends=[GO_db GOstats httr lattice openxlsx xtable]; }; - PoDCall = derive2 { name="PoDCall"; version="1.0.0"; sha256="1sblbxwpqvznm51addm0rrbzimybqb9amawg53v94802cmk5c6jd"; depends=[diptest DT ggplot2 gridExtra LaplacesDemon mclust purrr readr rlist shiny shinyjs]; }; - PoTRA = derive2 { name="PoTRA"; version="1.8.2"; sha256="1wxirc82xn634xzp3z9h4g3hnn6l8x81ayvhhrwplja2fc5kbh7a"; depends=[BiocGenerics graph graphite igraph org_Hs_eg_db]; }; - PrInCE = derive2 { name="PrInCE"; version="1.8.0"; sha256="13lfs9afsxafakx8p0vikqrna478c5wxsc7k97xjjafyf2x6msx1"; depends=[Biobase dplyr forecast Hmisc LiblineaR magrittr MSnbase naivebayes progress purrr ranger Rdpack robustbase speedglm tester tidyr]; }; - PrecisionTrialDrawer = derive2 { name="PrecisionTrialDrawer"; version="1.8.0"; sha256="1s6ynsnk2y671k522ffsg2qy4rc62jax7krdd465iasj3wsz4h11"; depends=[BiocParallel biomaRt brglm cgdsr data_table DT GenomicRanges ggplot2 ggrepel googleVis httr IRanges jsonlite LowMACAAnnotation magrittr matrixStats RColorBrewer reshape2 S4Vectors shiny shinyBS stringr XML]; }; - Prostar = derive2 { name="Prostar"; version="1.24.8"; sha256="0ixan77d9spvi5s6sy3lf0rpsl0v8j8rn16mcm7r35c26sy3yd2j"; depends=[BiocManager colourpicker DAPAR DAPARdata data_table DT future highcharter htmlwidgets later promises R_utils rclipboard rhandsontable sass shiny shinyAce shinyBS shinycssloaders shinyjqui shinyjs shinythemes shinyTree shinyWidgets tibble webshot XML]; }; - ProtGenerics = derive2 { name="ProtGenerics"; version="1.24.0"; sha256="1c79k8nc28782w5gxi7pkm8jmddq1hdw6khs9kgsp8dyk60ak6fq"; depends=[]; }; - ProteoMM = derive2 { name="ProteoMM"; version="1.10.0"; sha256="009gqr9nr8blx8lcaypwqjcvg1p1r03mbmb7dy4jzgk63gzix881"; depends=[biomaRt gdata ggplot2 ggrepel gtools matrixStats]; }; - ProteomicsAnnotationHubData = derive2 { name="ProteomicsAnnotationHubData"; version="1.22.0"; sha256="1lfxrivdqiq6q95g4l7sly1qrlsykafcv7nsr8y8bxmw3xj1v3jv"; depends=[AnnotationHub AnnotationHubData Biobase BiocManager Biostrings GenomeInfoDb MSnbase mzR RCurl]; }; - PubScore = derive2 { name="PubScore"; version="1.4.0"; sha256="0cgghhkvk6jngvflsvqzwy2ri34y26cazppsps13zbd4hjv1x223"; depends=[dplyr ggplot2 ggrepel igraph intergraph network progress rentrez sna]; }; - PureCN = derive2 { name="PureCN"; version="1.22.2"; sha256="0bmp2j1p10hvx9gkq8wyxha006d793499g53g662yj8skb7cgz2v"; depends=[BiocGenerics Biostrings data_table DNAcopy futile_logger GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra IRanges Matrix RColorBrewer rhdf5 Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation VGAM]; }; - Pviz = derive2 { name="Pviz"; version="1.26.0"; sha256="04r9ybr3qw1pa6jh36jvxjydbf96i2ff9x9nzwwvzinz9wzcf9ic"; depends=[Biostrings biovizBase data_table GenomicRanges Gviz IRanges]; }; - QDNAseq = derive2 { name="QDNAseq"; version="1.28.0"; sha256="1p4544xlarkbgs9kybrrawq3v7qr6ix62nrc6l7dcksh2ka69yzf"; depends=[Biobase CGHbase CGHcall DNAcopy future future_apply GenomicRanges IRanges matrixStats R_utils Rsamtools]; }; - QFeatures = derive2 { name="QFeatures"; version="1.2.0"; sha256="198drsqhlkmzxlqg1n3nirqn5m83vb99ygi36whkaxdgjwzgp3gn"; depends=[AnnotationFilter Biobase BiocGenerics IRanges lazyeval MsCoreUtils MultiAssayExperiment ProtGenerics S4Vectors SummarizedExperiment]; }; - QSutils = derive2 { name="QSutils"; version="1.10.0"; sha256="01mn21gaprdgsl6m3n96p2f2n069p0dzfyf8bqc46dkq6r0qr1br"; depends=[ape BiocGenerics Biostrings psych]; }; - QUBIC = derive2 { name="QUBIC"; version="1.20.1"; sha256="113rhjcr8f3yqfcii013n23d6m9wjr3gajcn304n5mv9h4qikb8p"; depends=[biclust Matrix Rcpp RcppArmadillo]; }; - Qtlizer = derive2 { name="Qtlizer"; version="1.6.0"; sha256="196bq4vscpi9hzpplg0wdzb421s56zlw1b30fcjm71v1krpcri0k"; depends=[curl GenomicRanges httr stringi]; }; - QuartPAC = derive2 { name="QuartPAC"; version="1.24.0"; sha256="1d21cdmy594k6bznlrgfy4ykaxvjamp7nmsphdv1k4ga36qbwncz"; depends=[data_table GraphPAC iPAC SpacePAC]; }; - QuasR = derive2 { name="QuasR"; version="1.32.0"; sha256="1635ff11ahzjrh3cdcxrq5bgd100n444k7mc0maz0jx21vj8qqb1"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicFiles GenomicRanges IRanges Rbowtie Rhtslib Rsamtools rtracklayer S4Vectors ShortRead]; }; - QuaternaryProd = derive2 { name="QuaternaryProd"; version="1.26.0"; sha256="1pj58n86niqsjxcfyc10gc6w72a9i9lah3ry8427w2r1n3846qi8"; depends=[dplyr Rcpp yaml]; }; - R3CPET = derive2 { name="R3CPET"; version="1.24.0"; sha256="1b08k07iypsik6rr1lcp3hhmxghiwbghh08jrhnwhn9z1hpm6j0z"; depends=[BiocGenerics clValid data_table GenomeInfoDb GenomicRanges ggbio ggplot2 Hmisc igraph IRanges pheatmap Rcpp RCurl reshape2 S4Vectors]; }; - R453Plus1Toolbox = derive2 { name="R453Plus1Toolbox"; version="1.42.0"; sha256="0rnh6bnfmc83v8fx0wdc5zppj8nbr1j773i8w33kcrd7q8gdwwvg"; depends=[Biobase BiocGenerics biomaRt Biostrings BSgenome GenomicRanges IRanges R2HTML Rsamtools S4Vectors ShortRead SummarizedExperiment TeachingDemos VariantAnnotation xtable XVector]; }; - R4RNA = derive2 { name="R4RNA"; version="1.20.0"; sha256="1ablfqmppwm2ixivmchfwgii7073fs9wv9k1rjj6h1xyim4assiy"; depends=[Biostrings]; }; - RBGL = derive2 { name="RBGL"; version="1.68.0"; sha256="0l40ibf8g5s4ay83s92l198jjqc5l09hcmxqcjrpifvp5pjf9yy5"; depends=[BH graph]; }; - RBM = derive2 { name="RBM"; version="1.24.0"; sha256="15ybv04kn0d8w61sdbahk1j0vn9m567xwjs2kisiw0by82idgmn0"; depends=[limma marray]; }; - RBioinf = derive2 { name="RBioinf"; version="1.52.0"; sha256="1jckqnmhpyj5idlyynxxhz51fp84ahx7rxvh1mzpdnian6myr6g1"; depends=[graph]; }; - RCAS = derive2 { name="RCAS"; version="1.18.0"; sha256="0l92v870ndna8zjqwzf22fb9vyhkh6942v4gaiqr1yc4qr521p5p"; depends=[BiocGenerics Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 cowplot data_table DT genomation GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggseqlogo gprofiler2 IRanges knitr pbapply pheatmap plotly plotrix proxy ranger rmarkdown RSQLite rtracklayer S4Vectors]; }; - RCASPAR = derive2 { name="RCASPAR"; version="1.38.0"; sha256="08qg3rjxwkfznwr22rhixxz4b2l910fp5gykq1v11j3nipjjnnbk"; depends=[]; }; - RCM = derive2 { name="RCM"; version="1.8.0"; sha256="0cpqc6jqy1vb4bgj6j7dsglj2qm1bfk2hx0dbkpmcq61y9xy4pb0"; depends=[alabama edgeR ggplot2 MASS nleqslv phyloseq RColorBrewer reshape2 tensor tseries VGAM]; }; - RCSL = derive2 { name="RCSL"; version="1.0.0"; sha256="0bjn0yx2g70k6v1lhsaj7r3acljdr9jyf0x33irdmw23lpsrqgff"; depends=[ggplot2 igraph NbClust pracma RcppAnnoy Rtsne umap]; }; - RCy3 = derive2 { name="RCy3"; version="2.12.4"; sha256="1k5r9vi5gh6bhpcykd7x6kmnvixkx6r2fxn6h5w65snb2dnd1p9w"; depends=[base64enc base64url BiocGenerics dplR glue graph httr igraph IRkernel R_utils RColorBrewer RCurl RJSONIO uchardet XML]; }; - RCyjs = derive2 { name="RCyjs"; version="2.14.0"; sha256="1bni672lz8ijflslf9v9cps635iiiz5qfkq3lyw1kg90k6wh7691"; depends=[base64enc BiocGenerics BrowserViz graph httpuv]; }; - RDRToolbox = derive2 { name="RDRToolbox"; version="1.42.0"; sha256="14rrp3dlnvk4sn024vab5cwf5nzqrcbyabg7yc6al2769f6rlpdv"; depends=[MASS rgl]; }; - REBET = derive2 { name="REBET"; version="1.10.0"; sha256="121n2fian9wvc45zfm5k8kj05h6w4mrmpb77sm0hl24nwgr94l0q"; depends=[ASSET]; }; - REDseq = derive2 { name="REDseq"; version="1.38.0"; sha256="14d832py7ky0rwzi5ydpivyyy4k670v5yn3inhgj1qr8k9amdymr"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome BSgenome_Celegans_UCSC_ce2 ChIPpeakAnno IRanges multtest]; }; - REMP = derive2 { name="REMP"; version="1.16.0"; sha256="1zj8fvk5gb27rss1kbk7hc7chz9hwcpkp88d9a4l98qi77fi0aan"; depends=[AnnotationHub BiocGenerics BiocParallel Biostrings BSgenome caret doParallel foreach GenomeInfoDb GenomicRanges impute IRanges iterators kernlab minfi org_Hs_eg_db ranger readr rtracklayer S4Vectors settings SummarizedExperiment]; }; - RGMQL = derive2 { name="RGMQL"; version="1.12.4"; sha256="03c9ws9g44hcr1171xah6cyb987mlmv3qwkyryi53ahxyqik48lv"; depends=[BiocGenerics data_table dplyr GenomicRanges glue httr plyr RGMQLlib rJava rtracklayer S4Vectors xml2]; }; - RGSEA = derive2 { name="RGSEA"; version="1.26.0"; sha256="09g4jg9gcjl8ynhbcj3hw3v96f1vkid9w5yb45h60q7s5fsdqr08"; depends=[BiocGenerics]; }; - RGalaxy = derive2 { name="RGalaxy"; version="1.36.0"; sha256="124zzyarkdb2bragf5z0514xl0awk0j63db6c2jxw67sbzdvksp3"; depends=[Biobase BiocGenerics optparse roxygen2 XML]; }; - RGraph2js = derive2 { name="RGraph2js"; version="1.20.0"; sha256="1h0jbzc6ch9pp0d24779dsimwy2qh24widkl038jbrz85pja331q"; depends=[digest graph rjson whisker]; }; - RIPAT = derive2 { name="RIPAT"; version="1.2.0"; sha256="11w04m99mr60wkv7rmlsyr5yvwnkklpzqcfg0pv9gg4a7rpcjqx9"; depends=[biomaRt GenomicRanges ggplot2 IRanges karyoploteR openxlsx plyr regioneR rtracklayer stringr]; }; - RITAN = derive2 { name="RITAN"; version="1.16.0"; sha256="030wpc4afvfdlryylxyrlv1d44hsrzrnx9v49dhs4rygq284522z"; depends=[BgeeDB dynamicTreeCut ggplot2 gplots gridExtra gsubfn hash igraph knitr linkcomm MCL plotrix png RColorBrewer reshape2 RITANdata sqldf STRINGdb]; }; - RIVER = derive2 { name="RIVER"; version="1.16.0"; sha256="1y92wrch7012ycv12kranc7znchgxydl4rpchkaazvhqwk13297j"; depends=[Biobase ggplot2 glmnet pROC]; }; - RImmPort = derive2 { name="RImmPort"; version="1.20.0"; sha256="0b8arhs6h7jfcp4sdwskvabniarlbsjwjqkrrwppa8w28k3vax41"; depends=[data_table DBI dplyr plyr reshape2 RSQLite sqldf]; }; - RJMCMCNucleosomes = derive2 { name="RJMCMCNucleosomes"; version="1.16.0"; sha256="0zpgfbr4i03gy7hnzgjp2i2nv0lq94a7dx4jlyk0idhf0rnk2jz7"; depends=[BiocGenerics BiocParallel consensusSeekeR GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; - RLMM = derive2 { name="RLMM"; version="1.54.0"; sha256="0q184j0fpx0sp9zi71j6j9k3ycc1r6df46qi3wbnlb1m8aqzvyj9"; depends=[MASS]; }; - RLassoCox = derive2 { name="RLassoCox"; version="1.0.0"; sha256="105dap39j4r1xqy1kwhc2b8ifcml26rhrz5h97596wpav9ynmwxx"; depends=[glmnet igraph Matrix survival]; }; - RMassBank = derive2 { name="RMassBank"; version="3.2.0"; sha256="0mgr15b7kx5i2ia33g8r62pfw03d33g7qz4r40dkhpgr3sbvyv67"; depends=[assertthat Biobase digest enviPat httr MSnbase mzR rcdk Rcpp rjson S4Vectors XML yaml]; }; - RNAAgeCalc = derive2 { name="RNAAgeCalc"; version="1.4.0"; sha256="150dslxydc9vnyfvhnxqq441v54ml236vi67mj06xysfg8zil1kd"; depends=[AnnotationDbi ggplot2 impute org_Hs_eg_db recount SummarizedExperiment]; }; - RNASeqPower = derive2 { name="RNASeqPower"; version="1.32.0"; sha256="17kxz7jrsip837q4fxwcnd85ak7l05mvl16m02zbimi95pbwvm0a"; depends=[]; }; - RNASeqR = derive2 { name="RNASeqR"; version="1.10.0"; sha256="0md7p08h2d15gf9kk9yz0zc46ya6z5d9bw2dpmaqnxvx42xlc5xp"; depends=[ballgown Biostrings clusterProfiler corrplot DESeq2 DOSE edgeR factoextra FactoMineR ggplot2 gridExtra org_Hs_eg_db org_Sc_sgd_db pathview PerformanceAnalytics pheatmap rafalib reshape2 reticulate Rsamtools stringr systemPipeR systemPipeRdata]; }; - RNAdecay = derive2 { name="RNAdecay"; version="1.12.0"; sha256="0aqja2q2xfszxfabvi0nby6k383xxvfcdfh4x0y7x3i3wcrzh70r"; depends=[ggplot2 gplots nloptr scales TMB]; }; - RNAinteract = derive2 { name="RNAinteract"; version="1.40.0"; sha256="0r1ciy7gszwd1nw3s1mvwsml26vymkzzk17bg59vi0fiqh0dblfr"; depends=[abind Biobase cellHTS2 geneplotter gplots hwriter ICS ICSNP lattice latticeExtra limma locfit RColorBrewer splots]; }; - RNAmodR = derive2 { name="RNAmodR"; version="1.6.0"; sha256="1vdrqhr6lii3gcbgqclhnrqqzzzpdm42psr6swdk536k0a1ax4zk"; depends=[BiocGenerics BiocParallel Biostrings BSgenome colorRamps GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 Gviz IRanges matrixStats Modstrings RColorBrewer reshape2 ROCR Rsamtools rtracklayer S4Vectors]; }; - RNAmodR_AlkAnilineSeq = derive2 { name="RNAmodR.AlkAnilineSeq"; version="1.6.0"; sha256="0mqk2zqnzbj0l563jsmq76lbvk1662m142zz31514x30bxz6z9nn"; depends=[BiocGenerics GenomicRanges Gviz IRanges RNAmodR S4Vectors]; }; - RNAmodR_ML = derive2 { name="RNAmodR.ML"; version="1.6.0"; sha256="10c3hzy6yxr23hgaidn3qslv7fgzfvq7wacw9ax97c3hi5n9gnbx"; depends=[BiocGenerics GenomicRanges IRanges ranger RNAmodR S4Vectors]; }; - RNAmodR_RiboMethSeq = derive2 { name="RNAmodR.RiboMethSeq"; version="1.6.0"; sha256="15k29lp8qzx9n7q9xpacwza9zrdljicagi24v9r6s1vdrfgbq1rf"; depends=[BiocGenerics GenomicRanges Gviz IRanges RNAmodR S4Vectors]; }; - RNAsense = derive2 { name="RNAsense"; version="1.6.0"; sha256="0470g4d2sp9qbzcqsk5w5z0wsqmd7cgdpwksvl8rwy6kdizlblms"; depends=[ggplot2 NBPSeq qvalue SummarizedExperiment]; }; - ROC = derive2 { name="ROC"; version="1.68.1"; sha256="1rmsrvn6hrg9ay7xfb05mfkxknnig78p3kbk9ghsd11lhx2fjm3s"; depends=[knitr]; }; - ROCpAI = derive2 { name="ROCpAI"; version="1.4.0"; sha256="1634c5vwjiflcs0djnml3l0p45fi8rwigm5p81nad7cql21vvawc"; depends=[boot fission knitr SummarizedExperiment]; }; - ROSeq = derive2 { name="ROSeq"; version="1.4.0"; sha256="1vdy26rs25hvym3y7dvyd9ld4zc91zqwky60461acy58g8nmh0wd"; depends=[edgeR limma pbmcapply]; }; - ROTS = derive2 { name="ROTS"; version="1.20.0"; sha256="18wyi73l95df182vg3m014sxwdbpggr61vsbazhyw4vyx2fnzmpl"; depends=[Biobase Rcpp]; }; - ROntoTools = derive2 { name="ROntoTools"; version="2.20.0"; sha256="03anqp8mbcnjhf6sg5jkc31mdxwifvhbqh8hvkj3xzmyvfbf6vz3"; depends=[boot graph KEGGgraph KEGGREST Rgraphviz]; }; - RPA = derive2 { name="RPA"; version="1.48.0"; sha256="0hdnaqv1iivq365nnbcw1hsampql8icldnrar725jbivpqsv1bj4"; depends=[affy BiocGenerics phyloseq]; }; - RProtoBufLib = derive2 { name="RProtoBufLib"; version="2.4.0"; sha256="1hyds97ay4mn7nl830yh9v8mlasgsljsx5wsrhz2zsmbbyx6wbnb"; depends=[]; }; - RRHO = derive2 { name="RRHO"; version="1.32.0"; sha256="1bim6db375jb8ibf4ccqdjh5kir0av77qwvn3jxp7l14hpbmv3c8"; depends=[VennDiagram]; }; - RSVSim = derive2 { name="RSVSim"; version="1.32.0"; sha256="1kasdg8z3yr9n89rd9bcycnv43yg5b46nflksgciif6xd4shmcrb"; depends=[Biostrings GenomicRanges IRanges ShortRead]; }; - RSeqAn = derive2 { name="RSeqAn"; version="1.12.0"; sha256="10z541vymjqfddi5bhiws44smvrqcxqn5ns7s4rqif3h2n4n1chx"; depends=[Rcpp]; }; - RTCA = derive2 { name="RTCA"; version="1.44.0"; sha256="1ivsz36zw89yjrs34bk5wk8nag2ckaxahrvplh56kw6948vq0d9k"; depends=[Biobase gtools RColorBrewer]; }; - RTCGA = derive2 { name="RTCGA"; version="1.22.0"; sha256="0rw6d1lcsaf7ia492qyj024sdi9qw3hn7pa44f9vw21npbr4jsaf"; depends=[assertthat data_table dplyr ggplot2 ggthemes knitr purrr rvest scales stringi survival survminer viridis XML xml2]; }; - RTCGAToolbox = derive2 { name="RTCGAToolbox"; version="2.22.1"; sha256="0lggavnzq9ypz0ka1a3qwfw9d8jm5g2bw9njg56ag95daklb1zdv"; depends=[BiocGenerics data_table DelayedArray GenomeInfoDb GenomicRanges httr limma RaggedExperiment RCircos RCurl RJSONIO S4Vectors stringr SummarizedExperiment survival TCGAutils XML]; }; - RTN = derive2 { name="RTN"; version="2.16.0"; sha256="1p7qwhs1rk0s3am67h9akm4p19sqm9ndjr5jp1zc434wqm7ihfdm"; depends=[car data_table igraph IRanges limma minet mixtools pheatmap pwr RedeR S4Vectors snow SummarizedExperiment viper]; }; - RTNduals = derive2 { name="RTNduals"; version="1.16.0"; sha256="01jzqfzqfj49yl8ylikgcpg6pw2r8s69bmyxgx8bmw2mh4vwyvww"; depends=[RTN]; }; - RTNsurvival = derive2 { name="RTNsurvival"; version="1.16.0"; sha256="16jjik6si86p8c8q11fvq0h6swflbslayify3cydj6g37mwlnri6"; depends=[data_table dunn_test egg ggplot2 pheatmap RColorBrewer RTN RTNduals scales survival]; }; - RTopper = derive2 { name="RTopper"; version="1.38.0"; sha256="1jizdgcni1zm4akvl50s76szk0701b3z1ry78sjj8501jc806bcy"; depends=[Biobase limma multtest]; }; - RUVSeq = derive2 { name="RUVSeq"; version="1.26.0"; sha256="1fy0k1p0m209lzjpd5jhfnifa22lrn63qq3a3kn5g0xhbbmijzac"; depends=[Biobase EDASeq edgeR MASS]; }; - RUVcorr = derive2 { name="RUVcorr"; version="1.24.0"; sha256="1dr0kczj3lvv193yh0vp2hqv0b846g9kq0qhr054k58yfp3dplip"; depends=[BiocParallel bladderbatch corrplot gridExtra lattice MASS psych reshape2 snowfall]; }; - RUVnormalize = derive2 { name="RUVnormalize"; version="1.26.0"; sha256="0gajn59j0i11j5gxa5nd4srq8ki2355j0xk1x8k15cr7sdrrd12l"; depends=[Biobase RUVnormalizeData]; }; - RVS = derive2 { name="RVS"; version="1.14.0"; sha256="1690agl8jx5fc7x1n9ffiszsbg2nlz0m9gh400hdkrw74dhv9l5l"; depends=[GENLIB gRain kinship2 snpStats]; }; - RadioGx = derive2 { name="RadioGx"; version="1.2.0"; sha256="1vv76lhsrk037pgvnb2a1817lh58vnbcl4ka6zrxmaailjb8khs1"; depends=[assertthat Biobase BiocParallel caTools CoreGx downloader magicaxis matrixStats RColorBrewer reshape2 S4Vectors scales SummarizedExperiment]; }; - RaggedExperiment = derive2 { name="RaggedExperiment"; version="1.16.0"; sha256="0k8hnyx7yvn9cnmv9fp66a5ph1yv8a732dk3yaxwp8gdlz1mps6n"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges Matrix MatrixGenerics S4Vectors SummarizedExperiment]; }; - RandomWalkRestartMH = derive2 { name="RandomWalkRestartMH"; version="1.12.0"; sha256="01gssx570rdsfncyb23v9fgq3yqsicw8mak7jpx8n1scjpszqdmp"; depends=[dnet igraph Matrix]; }; - RankProd = derive2 { name="RankProd"; version="3.18.0"; sha256="0wgs5b2a8i5bcj9vr4pcqzm52rkh453kr736i0qww1si7drj2s1r"; depends=[gmp Rmpfr]; }; - RareVariantVis = derive2 { name="RareVariantVis"; version="2.20.0"; sha256="1v0mpjwgqxgqa90x9h5lfmpllfch1fzqim360h6l3a2ycnvnvpyj"; depends=[BiocGenerics BSgenome BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb GenomicFeatures GenomicRanges GenomicScores googleVis gtools IRanges phastCons100way_UCSC_hg19 S4Vectors SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; - RbcBook1 = derive2 { name="RbcBook1"; version="1.60.0"; sha256="1f6pss18l0l4m43f3nfx21nnyr8h6wi1f4wv4197hjdhi4wzs2la"; depends=[Biobase graph rpart]; }; - Rbec = derive2 { name="Rbec"; version="1.0.0"; sha256="08990zfzkz4awi0ysc9gvp8pbc6pbc9bidgfidjqm574fqgm968v"; depends=[dada2 doParallel foreach ggplot2 Rcpp readr]; }; - Rbowtie = derive2 { name="Rbowtie"; version="1.32.0"; sha256="0mfikbrs28q7r3lnsq0jma5x6nkrnm3q46242jh35w9c969jk5yy"; depends=[]; }; - Rbowtie2 = derive2 { name="Rbowtie2"; version="1.14.0"; sha256="0r5yqjal48xlcv5cidi7p3zwygvsllmv2zzkwkc9kfq083l2i4ih"; depends=[]; }; - Rcade = derive2 { name="Rcade"; version="1.34.0"; sha256="0llg1v8y1waw4mg62k6sgg0q5yckf4f0spyrzlf2l69vm685ksfl"; depends=[baySeq GenomeInfoDb GenomicAlignments GenomicRanges IRanges plotrix rgl Rsamtools S4Vectors]; }; - RcisTarget = derive2 { name="RcisTarget"; version="1.12.0"; sha256="1yh0l11vnslgr6zsbpgc8mc4aa32zy34f5yrz98hkcdl53iw5y7f"; depends=[arrow AUCell BiocGenerics data_table dplyr feather GenomeInfoDb GenomicRanges GSEABase R_utils SummarizedExperiment tibble]; }; - Rcpi = derive2 { name="Rcpi"; version="1.28.0"; sha256="0c5b30w9kam86848iqffz7kv50qxacpljcwsf7slj9yrnyrh0jxq"; depends=[Biostrings ChemmineR doParallel fmcsR foreach GOSemSim rcdk RCurl rjson]; }; - Rcwl = derive2 { name="Rcwl"; version="1.8.1"; sha256="185lra9lrvw5yhvda68gcsk7j3rhdillxjx7gy5v9a9g2hmbh3sv"; depends=[basilisk batchtools BiocParallel codetools DiagrammeR R_utils S4Vectors shiny yaml]; }; - RcwlPipelines = derive2 { name="RcwlPipelines"; version="1.8.0"; sha256="1lx0d5k3bdvxmb06lcqfzasz623nc3jagkfx2kq2s0x7ld50rafa"; depends=[BiocFileCache git2r httr rappdirs Rcwl S4Vectors]; }; - Rdisop = derive2 { name="Rdisop"; version="1.52.0"; sha256="0v3pq5hpgfprchjjnn6xqbgy49bw4dfhhs0ni78savhxk1k7m7ic"; depends=[Rcpp]; }; - ReQON = derive2 { name="ReQON"; version="1.38.0"; sha256="1z13avbxwvvhh03arjfnaipznynifsi8k2hzw4kappz24f7lwmza"; depends=[rJava Rsamtools seqbias]; }; - ReactomeContentService4R = derive2 { name="ReactomeContentService4R"; version="1.0.0"; sha256="1n27g9bkjhqik66v7y28yrqxm2ccjw92r9afp64n7ph6qk6qkjq6"; depends=[data_table doParallel foreach httr jsonlite magick]; }; - ReactomeGSA = derive2 { name="ReactomeGSA"; version="1.6.1"; sha256="0gbc86vpvcx9jrpnrwapm1n38f8w8a309qdq78kghl45az8shfd8"; depends=[ggplot2 gplots httr jsonlite progress RColorBrewer]; }; - ReactomeGraph4R = derive2 { name="ReactomeGraph4R"; version="1.0.0"; sha256="19vgz9kxnvf959hpxwmgv0s6g52qg7aa4glsn40s17mrsbmprgvg"; depends=[data_table doParallel foreach getPass jsonlite magrittr neo4r purrr ReactomeContentService4R rlang]; }; - ReactomePA = derive2 { name="ReactomePA"; version="1.36.0"; sha256="1293z89ai766c559axgr7mz5x4564gyl9xqzf6s8s0aj1xb35gqf"; depends=[AnnotationDbi DOSE enrichplot ggplot2 ggraph graphite igraph reactome_db]; }; - ReadqPCR = derive2 { name="ReadqPCR"; version="1.38.0"; sha256="0a5paks4q210h3261p59mc19pbwq3znkn7mirsvcpv9y6ha7jfzj"; depends=[Biobase]; }; - RedeR = derive2 { name="RedeR"; version="1.40.5"; sha256="1jamcdh70f0mq99ydlxry080r0jsxh798b8bpij1r4jq5px94wbp"; depends=[igraph]; }; - RefPlus = derive2 { name="RefPlus"; version="1.62.0"; sha256="0j9xia747rhbxz7vx20cvb3bsqpz6y4q1mh7m9nas0x3dfrzcci9"; depends=[affy affyPLM Biobase preprocessCore]; }; - RegEnrich = derive2 { name="RegEnrich"; version="1.2.0"; sha256="1n6sgvbmbknp20i732w5xv2a882ri1xli7h3n4wcsl95614aszl5"; depends=[BiocParallel BiocSet DESeq2 DOSE dplyr fgsea ggplot2 limma magrittr randomForest reshape2 S4Vectors SummarizedExperiment tibble WGCNA]; }; - RepViz = derive2 { name="RepViz"; version="1.8.0"; sha256="0jpa9h59q1rjqxx4g6gsk4v33zf9k2xb1cggp4hpgyy7n9cqph0h"; depends=[biomaRt GenomicRanges IRanges Rsamtools S4Vectors]; }; - Repitools = derive2 { name="Repitools"; version="1.38.0"; sha256="0l3aqchy0d680jpaz6nws2k3byh2pxqxnb94gvax3703pm73jr3l"; depends=[BiocGenerics Biostrings BSgenome cluster DNAcopy edgeR GenomeInfoDb GenomicAlignments GenomicRanges gplots gsmoothr IRanges MASS Ringo Rsamtools Rsolnp rtracklayer S4Vectors]; }; - ReportingTools = derive2 { name="ReportingTools"; version="2.32.1"; sha256="0wq9y649dh1am6djzz0xlz42428xsgw2bdx1dknhdw2xbydmmx47"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category DESeq2 edgeR ggbio ggplot2 GOstats GSEABase hwriter IRanges knitr lattice limma PFAM_db R_utils XML]; }; - ResidualMatrix = derive2 { name="ResidualMatrix"; version="1.2.0"; sha256="0p7va19aw0j6anx7ck879kbi5cn7dy712h5ia94adr38ssismv1v"; depends=[DelayedArray Matrix S4Vectors]; }; - Rfastp = derive2 { name="Rfastp"; version="1.2.0"; sha256="1hq6wpxfildizr4wjlyfdsjr65394yvsv7a31iwwhj0icbhcdbfw"; depends=[ggplot2 Rcpp reshape2 Rhtslib rjson zlibbioc]; }; - Rgin = derive2 { name="Rgin"; version="1.12.0"; sha256="1bx47nk84h2yh1npijl7agp36ky8ad4fcdk8w5j49z4x2mj1pzb0"; depends=[RcppEigen]; }; - Rgraphviz = derive2 { name="Rgraphviz"; version="2.36.0"; sha256="0d0xq1vgr4b165cn4wg7zmfjyc1d9ir4amgs196j4cgrhpmrnl8s"; depends=[graph]; }; - Rhdf5lib = derive2 { name="Rhdf5lib"; version="1.14.2"; sha256="1cwynbcaaxmbh45fc0d264liqdj0wbjlj7k2bsq3qfjbnh6kkam5"; depends=[]; }; - Rhisat2 = derive2 { name="Rhisat2"; version="1.8.0"; sha256="1hqahh5h22mj2crqp6r9xnm111xmfgk39c100rcaziqrpdy5npk8"; depends=[GenomicFeatures GenomicRanges SGSeq]; }; - Rhtslib = derive2 { name="Rhtslib"; version="1.24.0"; sha256="0acpgv98529ic2i2k03knz05akb6h51wbz7sr5zgi8gk4nmawrlf"; depends=[zlibbioc]; }; - RiboDiPA = derive2 { name="RiboDiPA"; version="1.0.0"; sha256="1zxav8j5ja6dswlhq70pyjqy3xsd5ra2n4sksi2m97xdydy0iq5q"; depends=[BiocFileCache data_table DESeq2 doParallel elitism foreach GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges matrixStats qvalue Rcpp reldist Rsamtools S4Vectors]; }; - RiboProfiling = derive2 { name="RiboProfiling"; version="1.22.0"; sha256="1jmd8yrv7p7hn4gdibg3svmhqxjyrnfp7cgsqg8zv862lgd75zsl"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr reshape2 Rsamtools rtracklayer S4Vectors sqldf]; }; - Ringo = derive2 { name="Ringo"; version="1.56.0"; sha256="1ysivh14xxfs51mdq4sdddhfdas96cdqhsj9bzy10ys9myxf3q2x"; depends=[Biobase BiocGenerics genefilter lattice limma Matrix RColorBrewer vsn]; }; - Risa = derive2 { name="Risa"; version="1.34.0"; sha256="17122fhcb40ib3i2yg6rpjz9qy893nsdmm10gdm86ivlnmf53ng7"; depends=[affy Biobase biocViews Rcpp xcms]; }; - Rmagpie = derive2 { name="Rmagpie"; version="1.48.0"; sha256="14fgyhfivr4biy5hf3jz1fnq25m6qgvv68lmlzqs8099d2z0jx6i"; depends=[Biobase e1071 kernlab pamr]; }; - RmiR = derive2 { name="RmiR"; version="1.48.0"; sha256="128f8zddhfzq1wljvrinlnyy0phxygg2v3razb2fflm0fdn1gx2x"; depends=[DBI RmiR_Hs_miRNA]; }; - Rmmquant = derive2 { name="Rmmquant"; version="1.10.0"; sha256="13lxqgrrk8cdbrxlj4hbvvw6vx2y0d9yb4w8qnihmwlckzf7ra3b"; depends=[BiocStyle DESeq2 devtools GenomicRanges org_Mm_eg_db Rcpp S4Vectors SummarizedExperiment TBX20BamSubset TxDb_Mmusculus_UCSC_mm9_knownGene]; }; - RnBeads = derive2 { name="RnBeads"; version="2.10.0"; sha256="07x41v0zs6fsayc8y2xvw3zyj97lqnhn18a58wjc045qiqbjc3ah"; depends=[BiocGenerics cluster ff fields GenomicRanges ggplot2 gplots gridExtra illuminaio IRanges limma MASS matrixStats methylumi plyr S4Vectors]; }; - RnaSeqSampleSize = derive2 { name="RnaSeqSampleSize"; version="2.2.0"; sha256="0593nz2brigsamj3wi6wbqi424d7awl9pgdna8n9srwpz44j30l9"; depends=[biomaRt edgeR heatmap3 KEGGREST matlab Rcpp RnaSeqSampleSizeData]; }; - Rnits = derive2 { name="Rnits"; version="1.26.0"; sha256="15svapaz8nvbip34n9q4ywh21vpzhxpy8shjbjxgiyz9bf1mpfsp"; depends=[affy Biobase boot ggplot2 impute limma qvalue reshape2]; }; - RpsiXML = derive2 { name="RpsiXML"; version="2.34.0"; sha256="12qaa6inbqgabyi3whm0jqvyhb5kbdyh6k8rc2y0irpiv7j85i8f"; depends=[annotate AnnotationDbi Biobase graph hypergraph RBGL XML]; }; - Rqc = derive2 { name="Rqc"; version="1.26.0"; sha256="02hwj2vd003x0zf273ndnwh7kxy6wc3sz14d3kryp2w2aqjj826f"; depends=[BiocGenerics BiocParallel BiocStyle Biostrings biovizBase GenomicAlignments GenomicFiles ggplot2 IRanges knitr markdown plyr Rcpp reshape2 Rsamtools S4Vectors shiny ShortRead]; }; - Rsamtools = derive2 { name="Rsamtools"; version="2.8.0"; sha256="0arhh5bbx3pmxmkh5sjgczcswqy83d35r7cjhd2knpczdvrixaq5"; depends=[BiocGenerics BiocParallel Biostrings bitops GenomeInfoDb GenomicRanges IRanges Rhtslib S4Vectors XVector zlibbioc]; }; - Rsubread = derive2 { name="Rsubread"; version="2.6.4"; sha256="043m4512q73x6q529hqfgrap0fq5anvny4va085nafia06b805pi"; depends=[Matrix]; }; - Rtpca = derive2 { name="Rtpca"; version="1.2.0"; sha256="0z8q7iyk3f38sn928fan96lwy2xkhx5bzhq184sbn8v3hadhhxyd"; depends=[Biobase dplyr fdrtool ggplot2 pROC tibble tidyr]; }; - Rtreemix = derive2 { name="Rtreemix"; version="1.54.0"; sha256="0rkvkdwyivlvx32azmfwfv1pg1c879mil3h9wz7pwlmxg5ick3yi"; depends=[Biobase graph Hmisc]; }; - S4Vectors = derive2 { name="S4Vectors"; version="0.30.2"; sha256="0n13j8fkiy8b071wvwwh3ip9cvq22f74hb1msx91mdab2xl47zxs"; depends=[BiocGenerics]; }; - SAIGEgds = derive2 { name="SAIGEgds"; version="1.6.0"; sha256="0liacxqmalsmg4siafvbas177n6q53rzf2j9hhxv25gp97kld85s"; depends=[gdsfmt Rcpp RcppArmadillo RcppParallel SeqArray SPAtest]; }; - SANTA = derive2 { name="SANTA"; version="2.28.0"; sha256="0nncii7zwgrw8l4njiw63x3ml6qfm53sa29ldrlipaynmv1cwdzh"; depends=[igraph Matrix]; }; - SBGNview = derive2 { name="SBGNview"; version="1.6.0"; sha256="0b44b5ll7ydq6a15543glcwpw4kyvrbfjzwh99v0s8mnpxjfqrfn"; depends=[AnnotationDbi bookdown httr igraph KEGGREST knitr pathview Rdpack rmarkdown rsvg SBGNview_data SummarizedExperiment xml2]; }; - SBMLR = derive2 { name="SBMLR"; version="1.88.0"; sha256="0sd3ck7milkxdaz3ng4kra70xch5b8db444na3r92m8c1kxbwh28"; depends=[deSolve XML]; }; - SC3 = derive2 { name="SC3"; version="1.20.0"; sha256="0cix5yym8jr6izb14c0lysj8n5015nl94sqlzsqqfdhg0011lhlw"; depends=[BiocGenerics cluster doParallel doRNG e1071 foreach ggplot2 pheatmap Rcpp RcppArmadillo robustbase ROCR rrcov S4Vectors shiny SingleCellExperiment SummarizedExperiment WriteXLS]; }; - SCAN_UPC = derive2 { name="SCAN.UPC"; version="2.34.0"; sha256="1aqm2dwh3dri1mz6h8j033z2bpng5raffj6q58xviwivsmy26kgd"; depends=[affy affyio Biobase Biostrings foreach GEOquery IRanges MASS oligo sva]; }; - SCANVIS = derive2 { name="SCANVIS"; version="1.6.0"; sha256="1mi9hh5h3wwy1rnj515rzcr0wnh4p4ndg6lc0x94zvvl2agkganq"; depends=[IRanges plotrix RCurl rtracklayer]; }; - SCATE = derive2 { name="SCATE"; version="1.2.0"; sha256="17jlk8r7rh095ikghqj8kp46wr9wkjj9bkc09jgpifyg59kwx1n8"; depends=[GenomicAlignments GenomicRanges mclust preprocessCore Rtsne SCATEData splines2 xgboost]; }; - SCArray = derive2 { name="SCArray"; version="1.0.0"; sha256="1i75c3wr48qxfpmma1ixanykvq625y28pjs8pm29qcl8is3nix92"; depends=[BiocGenerics DelayedArray gdsfmt IRanges S4Vectors SingleCellExperiment SummarizedExperiment]; }; - SCBN = derive2 { name="SCBN"; version="1.10.0"; sha256="1iajwwkjdgcixvpjppbfz7k0v4929f7ihjx6vic6k96w3r5fvvkk"; depends=[]; }; - SCFA = derive2 { name="SCFA"; version="1.2.0"; sha256="13rpp8iw9rrq15w937dvx0z9xd2f68snrjnjya0rkdjgjlk51970"; depends=[BiocParallel cluster clusterCrit glmnet igraph keras Matrix matrixStats psych RhpcBLASctl survival tensorflow]; }; - SCOPE = derive2 { name="SCOPE"; version="1.4.0"; sha256="026cjqmn5d12a54d3nxvpjbyg1wl8msn7fh3nkyb7gcaniyxnkx2"; depends=[BiocGenerics Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 DescTools DNAcopy doParallel foreach GenomeInfoDb GenomicRanges gplots IRanges RColorBrewer Rsamtools S4Vectors]; }; - SCnorm = derive2 { name="SCnorm"; version="1.14.0"; sha256="0mm9yikr0aj4k8dm6iiqs32rpj5vpyx9bsphsw7fvq16rc7fizjl"; depends=[BiocGenerics BiocParallel cluster data_table forcats ggplot2 moments quantreg S4Vectors SingleCellExperiment SummarizedExperiment]; }; - SDAMS = derive2 { name="SDAMS"; version="1.12.0"; sha256="13ppvb73yaplcckigwvqc1whw8dr16gakp415iqif0n1ry2pg8a7"; depends=[qvalue SummarizedExperiment trust]; }; - SELEX = derive2 { name="SELEX"; version="1.24.0"; sha256="06h5vrjb98l6fj8v09jrfskm0734lzx7zc1v38640vdrrz2857vp"; depends=[Biostrings rJava]; }; - SEPIRA = derive2 { name="SEPIRA"; version="1.12.0"; sha256="08f2wgfrn2r5xxz85c9jjchyy923fa82mdb4l4rmmvl08qvfv0xl"; depends=[corpcor limma]; }; - SEtools = derive2 { name="SEtools"; version="1.6.0"; sha256="17ykywi368fmsncsjcmgz3g75wgp2s50vk5gvxsciypsmffvnicc"; depends=[BiocParallel circlize ComplexHeatmap data_table DESeq2 edgeR Matrix openxlsx randomcoloR S4Vectors seriation SummarizedExperiment sva]; }; - SGSeq = derive2 { name="SGSeq"; version="1.26.0"; sha256="0i1yaw8h8gibakvaf1xd6nnjx2bsb2s9c0q74rbq9lm7haihivp6"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges igraph IRanges Rsamtools rtracklayer RUnit S4Vectors SummarizedExperiment]; }; - SIAMCAT = derive2 { name="SIAMCAT"; version="1.12.0"; sha256="1dn3kp30052vf7r1bf4k4bz29vj6l47jryiznpam30vfzhj7z4i0"; depends=[beanplot corrplot glmnet gridBase gridExtra infotheo LiblineaR matrixStats mlr ParamHelpers phyloseq pROC progress PRROC RColorBrewer scales stringr]; }; - SICtools = derive2 { name="SICtools"; version="1.22.0"; sha256="0hcwpdl9h46k72yppz6gbsyj5q52bpfqv8xmz9f7sddpw0r3zwk5"; depends=[Biostrings doParallel GenomicRanges IRanges matrixStats plyr Rsamtools stringr]; }; - SIM = derive2 { name="SIM"; version="1.62.0"; sha256="01blkbvv1j7fvrxc1dv4b4gg24rmd7qaqdqvai5zzwawgl6lx9rn"; depends=[globaltest quantreg quantsmooth]; }; - SIMAT = derive2 { name="SIMAT"; version="1.24.0"; sha256="0nlszv5k39f09z9jqm935xc9w6crd2wcvz2b4a26rm23872gxhwr"; depends=[ggplot2 mzR Rcpp reshape2]; }; - SIMD = derive2 { name="SIMD"; version="1.10.0"; sha256="1y27cz440g19wkmg7vgbdgfxh2hpm9mfibwc41iggp1bmlbpi9i1"; depends=[edgeR methylMnM statmod]; }; - SIMLR = derive2 { name="SIMLR"; version="1.18.0"; sha256="1w05kqykwi1f3rv35pcgjd1q62h54k9zsavw54fkvgyl9h3ham42"; depends=[Matrix pracma Rcpp RcppAnnoy RSpectra]; }; - SISPA = derive2 { name="SISPA"; version="1.22.0"; sha256="0m22blf9y9pvfdm0qcym2m3c2vlhgg7ys2i481fvfblsfb4vqcgj"; depends=[changepoint data_table genefilter ggplot2 GSVA plyr]; }; - SLGI = derive2 { name="SLGI"; version="1.52.0"; sha256="1cfyz3s3qq391ch4pnz2q22kknkf6ndjahkvfmwyj2ds2b8lmiw1"; depends=[AnnotationDbi Biobase BiocGenerics GO_db lattice ScISI]; }; - SLqPCR = derive2 { name="SLqPCR"; version="1.58.0"; sha256="0bljq5b14wj7z04gipd8xfxwayz1i1lgnwyw9x4nvdr24byaxa4p"; depends=[]; }; - SMAD = derive2 { name="SMAD"; version="1.8.0"; sha256="03679hhgzc1fvbpy5vvx52f1ii8n7mmls9hg5inrd2ahnqcszd32"; depends=[dplyr magrittr Rcpp RcppAlgos tidyr]; }; - SMAP = derive2 { name="SMAP"; version="1.56.0"; sha256="1j3xmka2nyv6qfvq0gi3wp7dp44m29v1p7xi28d58wjkqq4x9scw"; depends=[]; }; - SMITE = derive2 { name="SMITE"; version="1.20.0"; sha256="1lilgqsfgk5w80rf0mr5fwnqcmh3a872hy4zflmg3a016kaskbwx"; depends=[AnnotationDbi Biobase BioNet geneLenDataBase GenomicRanges ggplot2 goseq Hmisc igraph IRanges KEGGREST org_Hs_eg_db plyr reactome_db S4Vectors scales]; }; - SNAGEE = derive2 { name="SNAGEE"; version="1.32.0"; sha256="1fpgsw0b8nyzbkandgs0lnc5dxfp2yx4j5yfms63sp63ch0fp227"; depends=[SNAGEEdata]; }; - SNPRelate = derive2 { name="SNPRelate"; version="1.26.0"; sha256="0m3ss821fhjcsnbdzwc93h42dhjsiklbfyizpwyzpkmq0c4l2kba"; depends=[gdsfmt]; }; - SNPediaR = derive2 { name="SNPediaR"; version="1.18.0"; sha256="0ndggr90ir090iwqw3j87j5393pw0nc3pn3hn9gaipwg8vh3x12j"; depends=[jsonlite RCurl]; }; - SNPhood = derive2 { name="SNPhood"; version="1.22.0"; sha256="06ijhbwvx4qac68h7qpynk44drafmaqi0nyf5qwsfxifh596vhv9"; depends=[BiocGenerics BiocParallel Biostrings checkmate cluster data_table DESeq2 GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges lattice RColorBrewer reshape2 Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; - SOMNiBUS = derive2 { name="SOMNiBUS"; version="1.0.0"; sha256="1v7fpq909nv3dz0ard9bxhza55m664g1i7qflsj6w8n2jkq7kmvp"; depends=[Matrix mgcv VGAM]; }; - SPEM = derive2 { name="SPEM"; version="1.32.0"; sha256="1kw8najzffwglmxjv949n19iiprhlmvbrvghkp2cdyrhlwsy56ss"; depends=[Biobase Rsolnp]; }; - SPIA = derive2 { name="SPIA"; version="2.44.0"; sha256="0spsf8ssc59axxlbjv2xxd5drvqg9c7hmyhnnngmfwccfz5j3w89"; depends=[KEGGgraph]; }; - SPLINTER = derive2 { name="SPLINTER"; version="1.18.0"; sha256="13x43b32gl7ya0iisfml5k8bb1flf0sv4ipkjchbi13daw68jz7z"; depends=[biomaRt Biostrings BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 googleVis Gviz IRanges plyr S4Vectors seqLogo stringr]; }; - SPONGE = derive2 { name="SPONGE"; version="1.14.0"; sha256="0xz3yr6pv32p7a504514ymd8ijcnwqvrc2vs8kpc5acc8x9wxla7"; depends=[Biobase data_table doRNG expm foreach glmnet gRbase igraph iterators logging MASS ppcor]; }; - SPsimSeq = derive2 { name="SPsimSeq"; version="1.2.0"; sha256="031y2b6prbxlpdl52g1y9x5gl9bf5n0604s99wp7m8a2xb60xhr2"; depends=[edgeR fitdistrplus Hmisc limma mvtnorm phyloseq SingleCellExperiment WGCNA]; }; - SQLDataFrame = derive2 { name="SQLDataFrame"; version="1.6.0"; sha256="12gyq44s23r5d2yb2k8iyxfnlrrnad8qzzir7lzdsc05j1wa69yp"; depends=[BiocGenerics DBI dbplyr dplyr lazyeval RSQLite S4Vectors tibble]; }; - SQUADD = derive2 { name="SQUADD"; version="1.42.0"; sha256="0ja02v1yzj8l414wpxwgcci5xlrnpsxljga8c5z79ri37kk19nh5"; depends=[RColorBrewer]; }; - SRAdb = derive2 { name="SRAdb"; version="1.54.0"; sha256="1b9mg42ff8a48l3796lb60chql9wmjmzy7cqdrh70g02f08nhx9w"; depends=[GEOquery graph RCurl RSQLite]; }; - STAN = derive2 { name="STAN"; version="2.20.0"; sha256="1pk10c2wj6qk3sfdwc607a2x73778b85gsb2f6njjbb0pxqym9bw"; depends=[BiocGenerics GenomeInfoDb GenomicRanges Gviz IRanges poilog Rsolnp S4Vectors]; }; - STATegRa = derive2 { name="STATegRa"; version="1.28.0"; sha256="0vd6i8kp0jr9926731vf94qk2vjq4y524ryzz1qj1mb5xz5lswcq"; depends=[affy Biobase calibrate edgeR foreach ggplot2 gplots gridExtra limma MASS]; }; - STRINGdb = derive2 { name="STRINGdb"; version="2.4.2"; sha256="0h9yw8hy7v25w3ap6bc60qiarxhrf7vaqs91mawszvqjgjv97a1d"; depends=[gplots hash igraph plotrix plyr png RColorBrewer RCurl sqldf]; }; - STROMA4 = derive2 { name="STROMA4"; version="1.16.0"; sha256="0akzwnccwhdm3g51fhbkchryxdp130lakk1s0vx5z3d0k45c6w5z"; depends=[Biobase BiocParallel cluster matrixStats]; }; - SWATH2stats = derive2 { name="SWATH2stats"; version="1.22.0"; sha256="1p69v8j2cd5pfp4bxgmyn8ga3mgd192rb7f38mrz4bmcfpv7ds4v"; depends=[biomaRt data_table ggplot2 reshape2]; }; - SamSPECTRAL = derive2 { name="SamSPECTRAL"; version="1.46.0"; sha256="1lfq2qy06migrwkk5yadbipml7741dlripvfl7a5h3yj8a0wys5x"; depends=[]; }; - ScISI = derive2 { name="ScISI"; version="1.64.0"; sha256="0y6gz15salvkcrdadq5vq7crw0lk83azgicvx5ghj0jb78l7dkwm"; depends=[annotate AnnotationDbi apComplex GO_db org_Sc_sgd_db RpsiXML]; }; - Scale4C = derive2 { name="Scale4C"; version="1.14.0"; sha256="0xq0sj9vahddnpm6d30szzfvmalizpy4zqq75s8hhq9j40165br9"; depends=[GenomicRanges IRanges smoothie SummarizedExperiment]; }; - ScaledMatrix = derive2 { name="ScaledMatrix"; version="1.0.0"; sha256="1j96fvw1waqxbv5c8myfmhsidq370z03yz13yqmrs4nn1rpn1a06"; depends=[DelayedArray Matrix S4Vectors]; }; - Sconify = derive2 { name="Sconify"; version="1.12.0"; sha256="14sg3lahn0fnipymq2li43sl50cxrw2lxzgzffkjn8y4blwvac2i"; depends=[dplyr flowCore FNN ggplot2 magrittr readr Rtsne tibble]; }; - SemDist = derive2 { name="SemDist"; version="1.26.0"; sha256="0281hmyr0x6gr640bjzkdmzjn5flbnggjxff4p3hxx7l08nsb0gr"; depends=[annotate AnnotationDbi GO_db]; }; - SeqArray = derive2 { name="SeqArray"; version="1.32.0"; sha256="0nlcj5q6g71bywzivji0399nq92bfnxmkb3szmkwl1xv0hqm4vq1"; depends=[Biostrings gdsfmt GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - SeqGSEA = derive2 { name="SeqGSEA"; version="1.32.0"; sha256="1qh2qb7hb8nb13jcfz8f5bkxigd439rrrixym5p3y4x6016jhpyn"; depends=[Biobase biomaRt DESeq2 doParallel]; }; - SeqGate = derive2 { name="SeqGate"; version="1.2.0"; sha256="0y9nmdcdn8bzg00a0hn5gs9fyijc1ckcg7cim2rgfzz6nwl9g9cz"; depends=[BiocManager GenomicRanges S4Vectors SummarizedExperiment]; }; - SeqSQC = derive2 { name="SeqSQC"; version="1.14.0"; sha256="0d3nrdjwmm4rsl5303rp3c045s1k6nzshsaah7nagnymgjfn96xw"; depends=[e1071 ExperimentHub gdsfmt GenomicRanges GGally ggplot2 IRanges rbokeh RColorBrewer reshape2 rmarkdown S4Vectors SNPRelate]; }; - SeqVarTools = derive2 { name="SeqVarTools"; version="1.30.0"; sha256="1bim6xp8w5a11qbazcalfdhhamzgl2yb5h6kf54n9jmqbl65qxy7"; depends=[Biobase BiocGenerics data_table gdsfmt GenomicRanges GWASExactHW IRanges logistf Matrix S4Vectors SeqArray]; }; - SharedObject = derive2 { name="SharedObject"; version="1.6.0"; sha256="1f2rz7d1h6gilxrlj2v800y8ak6pyp1vw8p1yyqm8sqcvw30qbm4"; depends=[BH BiocGenerics Rcpp]; }; - ShortRead = derive2 { name="ShortRead"; version="1.50.0"; sha256="0zqinw3c6h5v1c5nhzkiziirws16nbviccgw8nj2d22r33dbqwp3"; depends=[Biobase BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges hwriter IRanges lattice latticeExtra Rhtslib Rsamtools S4Vectors XVector zlibbioc]; }; - SigCheck = derive2 { name="SigCheck"; version="2.24.0"; sha256="1vhnv79lbrqjrhmh575yl844bckmmdfs4vawxxraswlhc2vdpnaf"; depends=[Biobase BiocParallel e1071 MLInterfaces survival]; }; - SigFuge = derive2 { name="SigFuge"; version="1.30.0"; sha256="0166fy52lbvbbss94hlkvgkcyih265ikzaf0v563rpv8na8lgc4b"; depends=[GenomicRanges ggplot2 matlab reshape sigclust]; }; - SigsPack = derive2 { name="SigsPack"; version="1.6.0"; sha256="0dx7z3vwvx9g7fsk6gnybqafvsq8na1sw95m54778nwd6kfknp1g"; depends=[Biobase Biostrings BSgenome GenomeInfoDb GenomicRanges quadprog rtracklayer SummarizedExperiment VariantAnnotation]; }; - SimBindProfiles = derive2 { name="SimBindProfiles"; version="1.30.0"; sha256="1nxk3w3k4y5xn31mdwk4z4lwrwkcmf3hwvsa9zi7afrhqfsq4k2w"; depends=[Biobase limma mclust Ringo]; }; - SimFFPE = derive2 { name="SimFFPE"; version="1.4.0"; sha256="14i87h4ajrfvdyqlgpld8yxfvb6qqc0pa3c72aydmacw5p4kw9zd"; depends=[Biostrings doParallel dplyr foreach GenomicRanges IRanges Rsamtools truncnorm]; }; - SingleCellExperiment = derive2 { name="SingleCellExperiment"; version="1.14.1"; sha256="1bwdhx0ss0s8f4xdgwd7x48apn849x4dyb5hbyglcz31r5vh1qgz"; depends=[BiocGenerics DelayedArray GenomicRanges S4Vectors SummarizedExperiment]; }; - SingleCellSignalR = derive2 { name="SingleCellSignalR"; version="1.4.0"; sha256="08gcx0ml63fdr3r1rshddfyawy7ay7vsvnbs7g0xrmrn7089d5yd"; depends=[BiocManager circlize data_table edgeR foreach gplots igraph limma multtest pheatmap Rtsne scran SIMLR stringr]; }; - SingleMoleculeFootprinting = derive2 { name="SingleMoleculeFootprinting"; version="1.0.0"; sha256="0ad1597fcw8r41agrmv8pdrzs4iin87c29x4ps8dzykaqhyckpan"; depends=[BiocGenerics Biostrings BSgenome data_table GenomeInfoDb GenomicRanges IRanges plyr QuasR RColorBrewer]; }; - SingleR = derive2 { name="SingleR"; version="1.6.1"; sha256="160inn831dg6vx4mnl2wm89f1cqwcn754r2iddhphqnzbqslqvfn"; depends=[beachmat BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats Matrix Rcpp S4Vectors SummarizedExperiment]; }; - SomaticSignatures = derive2 { name="SomaticSignatures"; version="2.28.0"; sha256="0jr11c9hz7m49xc8pi6xrr5fhbv68vafvqpzhr0pmm51vvr1vfs9"; depends=[Biobase Biostrings GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges NMF pcaMethods proxy reshape2 S4Vectors VariantAnnotation]; }; - SpacePAC = derive2 { name="SpacePAC"; version="1.30.0"; sha256="015rd0mldm858ji7wac8flcjxy7055fv27vv1yip2zrxdyg6b2k3"; depends=[iPAC]; }; - Spaniel = derive2 { name="Spaniel"; version="1.6.0"; sha256="16yj4pz8fngq1j8lm4y2fw72ij7y17zadwsagjzqrdbq3wxr4p8j"; depends=[dplyr DropletUtils ggplot2 igraph jpeg jsonlite magrittr png S4Vectors scater scran Seurat shiny SingleCellExperiment SummarizedExperiment]; }; - SparseSignatures = derive2 { name="SparseSignatures"; version="2.2.0"; sha256="0mfd9kn9hbpk6l9n96vl6sfm8hzl3lmj6q79svpjh0ng067aaxpf"; depends=[Biostrings BSgenome data_table GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges NMF nnlasso nnls reshape2]; }; - SpatialCPie = derive2 { name="SpatialCPie"; version="1.8.0"; sha256="1f3mdjhnv01hqddxl0md749lwpmzc82vdy55591c4cqxvffh6lrj"; depends=[colorspace data_table digest dplyr ggforce ggiraph ggplot2 ggrepel igraph lpSolve purrr readr rlang shiny shinycssloaders shinyjs shinyWidgets SummarizedExperiment tibble tidyr tidyselect zeallot]; }; - SpatialDecon = derive2 { name="SpatialDecon"; version="1.2.0"; sha256="0sdlz4ikddvghs3r1dbdqkhgl6351rgawy799kam6x0pkcsf2chr"; depends=[logNormReg]; }; - SpatialExperiment = derive2 { name="SpatialExperiment"; version="1.2.1"; sha256="1dx8s4mx95ibwsdfy3mb3xkavng7qwfrjwv3hbf4abxy8vyg2zl5"; depends=[BiocFileCache BiocGenerics DropletUtils magick rjson S4Vectors SingleCellExperiment SummarizedExperiment]; }; - SpeCond = derive2 { name="SpeCond"; version="1.46.0"; sha256="1si7xmmhcklq00cpzsf1w4sg1w6bxp1yk16l25h1znhmpwby65x9"; depends=[Biobase fields hwriter mclust RColorBrewer]; }; - Spectra = derive2 { name="Spectra"; version="1.2.2"; sha256="0781iq76mbz99rf28nvzv3rc9iv9h71sc7r7yjgyfprxas3a0yrs"; depends=[BiocGenerics BiocParallel fs IRanges MsCoreUtils ProtGenerics S4Vectors]; }; - SpectralTAD = derive2 { name="SpectralTAD"; version="1.8.0"; sha256="1bi7r0qid9xa0zzyh32hgi8fyw184dfc7lksrls4ngvy6282sc27"; depends=[BiocParallel cluster dplyr GenomicRanges HiCcompare magrittr Matrix PRIMME]; }; - SpidermiR = derive2 { name="SpidermiR"; version="1.22.1"; sha256="0019ax9m1bnmg78hczkxi9zb2i9iqxlgmanwaxffrfj31r2qr2kr"; depends=[AnnotationDbi gdata ggplot2 gplots gridExtra httr igraph lattice latticeExtra MAGeCKFlute miRNAtap miRNAtap_db networkD3 org_Hs_eg_db TCGAbiolinks visNetwork]; }; - SplicingFactory = derive2 { name="SplicingFactory"; version="1.0.3"; sha256="0nlhpnkvcc8h9sgdhlsfsf8yz232cyfwyayqhj5c6ix4y7r1rvxm"; depends=[SummarizedExperiment]; }; - SplicingGraphs = derive2 { name="SplicingGraphs"; version="1.32.0"; sha256="07037qz88iv6v7fzvb3xbvhqrfzn67vkj9kc8hyyscks487bzd21"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph igraph IRanges Rgraphviz Rsamtools S4Vectors]; }; - StarBioTrek = derive2 { name="StarBioTrek"; version="1.18.0"; sha256="0ih2ycqv6ybrzmrn26pbhpcmmbv1r9k0i0286ycd78lawd1ybqwb"; depends=[AnnotationDbi e1071 ggplot2 graphite igraph MLmetrics reshape2 ROCR SpidermiR]; }; - Streamer = derive2 { name="Streamer"; version="1.38.0"; sha256="0bszwkfmq4sk60842far10wlafbplin8b82bp702zkf517vjcyva"; depends=[BiocGenerics graph RBGL]; }; - Structstrings = derive2 { name="Structstrings"; version="1.8.0"; sha256="0m4lk3w506w4b8793hhqzazg3s4fqnrm4mr70ba90pq18jcffsnn"; depends=[BiocGenerics Biostrings crayon IRanges S4Vectors stringi stringr XVector]; }; - StructuralVariantAnnotation = derive2 { name="StructuralVariantAnnotation"; version="1.8.2"; sha256="04ac4mjh3pgdlws0aiacqg0vd7bhg890w44r7b90p947c3rk1mfw"; depends=[assertthat BiocGenerics Biostrings dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges rlang rtracklayer S4Vectors stringr SummarizedExperiment VariantAnnotation]; }; - SubCellBarCode = derive2 { name="SubCellBarCode"; version="1.8.0"; sha256="03wccycmj4krvknwk12jkp8mg6c4adk454akfybgydkydws0vh2y"; depends=[AnnotationDbi caret e1071 ggplot2 ggrepel gridExtra networkD3 org_Hs_eg_db Rtsne scatterplot3d]; }; - SummarizedBenchmark = derive2 { name="SummarizedBenchmark"; version="2.10.0"; sha256="1s629qqaqs8yr20k99ahq1fk0jr8ka60s1qpvzy80wmha7khzaix"; depends=[BiocGenerics BiocParallel crayon digest dplyr ggplot2 mclust rlang S4Vectors sessioninfo stringr SummarizedExperiment tibble tidyr UpSetR]; }; - SummarizedExperiment = derive2 { name="SummarizedExperiment"; version="1.22.0"; sha256="16np5ik6jgbi68mhlib6yskywwbaa50mlr7m3sh1hqk889whfn1g"; depends=[Biobase BiocGenerics DelayedArray GenomeInfoDb GenomicRanges IRanges Matrix MatrixGenerics S4Vectors]; }; - Summix = derive2 { name="Summix"; version="1.0.3"; sha256="1yvcf4mkz9hclx52zhiz9gzrvspkasc6rayyhw5x7x9c0fxdh6y8"; depends=[nloptr]; }; - Sushi = derive2 { name="Sushi"; version="1.30.0"; sha256="1m5l0nflhcynb3gz7b8qzvknb0s6xhds8z1yl3mbv8ic9qn2knv4"; depends=[biomaRt zoo]; }; - SwathXtend = derive2 { name="SwathXtend"; version="2.14.0"; sha256="08j4d2yyxvf8zch5paai5pr48b6g6yzh67500gv8w2pmx8mnwaml"; depends=[e1071 lattice openxlsx VennDiagram]; }; - SwimR = derive2 { name="SwimR"; version="1.29.0"; sha256="0n58x3i4k3icvhg8z60zlhpszv8bb9pain07nl9rszyvmpi71vg2"; depends=[gplots R2HTML signal]; }; - SynExtend = derive2 { name="SynExtend"; version="1.4.1"; sha256="0yl66fs0h871rdkgdnvnmjnakh6lyxg2h7l1iss8sd5ysd9xgnkz"; depends=[Biostrings DECIPHER IRanges S4Vectors]; }; - SynMut = derive2 { name="SynMut"; version="1.8.0"; sha256="09fszipz9nfhxhzyq27ng9xlip9gn29hs70gblr0ssz3g6bi7mni"; depends=[BiocGenerics Biostrings seqinr stringr]; }; - TADCompare = derive2 { name="TADCompare"; version="1.2.0"; sha256="1w7pw16kzh4wgzk97d83sysggbabarvcvjvq3z66pxf8p647fxy4"; depends=[cluster cowplot dplyr ggplot2 ggpubr HiCcompare magrittr Matrix PRIMME RColorBrewer reshape2 tidyr]; }; - TAPseq = derive2 { name="TAPseq"; version="1.4.0"; sha256="1smv992954wr26ljycram7mlf9yjx38mmcma7agqiqyfqafn7dci"; depends=[BiocGenerics BiocParallel Biostrings BSgenome dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges S4Vectors tidyr]; }; - TBSignatureProfiler = derive2 { name="TBSignatureProfiler"; version="1.4.11"; sha256="173pgd4rv1ry81kg1fpc0bllryx5zgg7xfpj06plwv5lx31v0nb0"; depends=[ASSIGN BiocGenerics BiocParallel ComplexHeatmap DESeq2 DT edgeR gdata ggplot2 GSVA magrittr RColorBrewer reshape2 rlang ROCit S4Vectors singscore SummarizedExperiment]; }; - TCC = derive2 { name="TCC"; version="1.32.0"; sha256="0im8gc5v28d4a5mrn4905x0kr0427x6qnr6nyawyrf6pcy13ffwd"; depends=[baySeq DESeq2 edgeR ROC]; }; - TCGAbiolinks = derive2 { name="TCGAbiolinks"; version="2.20.1"; sha256="0c6has5ch3q526f6h84s7g2a7mga4slga4i758lm0vpnzx2fj1v2"; depends=[biomaRt data_table downloader dplyr GenomicRanges ggplot2 httr IRanges jsonlite knitr plyr purrr R_utils readr rvest S4Vectors stringr SummarizedExperiment TCGAbiolinksGUI_data tibble tidyr XML xml2]; }; - TCGAbiolinksGUI = derive2 { name="TCGAbiolinksGUI"; version="1.18.0"; sha256="0prsrzrzhf5w6nipjvwlc61c0za8xg8xiqfc5igqlhz3hxlw7c29"; depends=[caret clusterProfiler colourpicker data_table downloader DT ELMER ggplot2 ggrepel maftools pathview plotly readr sesame shiny shinyBS shinydashboard shinyFiles shinyjs stringr SummarizedExperiment TCGAbiolinks TCGAbiolinksGUI_data]; }; - TCGAutils = derive2 { name="TCGAutils"; version="1.12.0"; sha256="00xbby4kzifkxm7aff9vha80kfbb311yj3fk3b4xvgmvpg9pwhiq"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicDataCommons GenomicFeatures GenomicRanges IRanges MultiAssayExperiment RaggedExperiment rvest S4Vectors stringr SummarizedExperiment xml2]; }; - TCseq = derive2 { name="TCseq"; version="1.16.0"; sha256="0qjac5cg7gzdrx44v50l7yz15k36lf5qvp5p4r58n1vc3b8y23yn"; depends=[BiocGenerics cluster e1071 edgeR GenomicAlignments GenomicRanges ggplot2 IRanges locfit reshape2 Rsamtools SummarizedExperiment]; }; - TDARACNE = derive2 { name="TDARACNE"; version="1.42.0"; sha256="0dvgyc5w45vzf4qrvfpkh8lvvvzlsz9bw2llwbwgm8lbi35j65vs"; depends=[Biobase GenKern Rgraphviz]; }; - TEQC = derive2 { name="TEQC"; version="4.14.0"; sha256="1p07ika75mxj5w9q034lxbciwy2q5l72gmp7kkh1n7qbvslqrjf4"; depends=[Biobase BiocGenerics hwriter IRanges Rsamtools]; }; - TFARM = derive2 { name="TFARM"; version="1.14.0"; sha256="01k21y63d59f33ivgdxvvgzklard7wpj86hzwki59d9nj3mfz52b"; depends=[arules fields GenomicRanges gplots stringr]; }; - TFBSTools = derive2 { name="TFBSTools"; version="1.30.0"; sha256="1avgjv2nyr28cla0z9dvh3v0hr1f561sz2as1k53a42irbjk0var"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome caTools CNEr DBI DirichletMultinomial GenomeInfoDb GenomicRanges gtools IRanges RSQLite rtracklayer S4Vectors seqLogo TFMPvalue XML XVector]; }; - TFEA_ChIP = derive2 { name="TFEA.ChIP"; version="1.12.0"; sha256="011nqd17fi3pk0am842w8dilc311pbsh5dqxzg8jw3i5wpr1ybrm"; depends=[biomaRt dplyr GenomicFeatures GenomicRanges IRanges org_Hs_eg_db R_utils]; }; - TFHAZ = derive2 { name="TFHAZ"; version="1.14.0"; sha256="1arfl18f7ihyxjzj4lgda04bhnf7rgxyzbflzlm6l8kj8jdkp10v"; depends=[GenomicRanges IRanges S4Vectors]; }; - TFutils = derive2 { name="TFutils"; version="1.12.2"; sha256="1rl79zjyfq0dg42qvf1hn20s94cjw6mwclwl7mvy9nlxb04wqvj8"; depends=[BiocFileCache dplyr DT GSEABase httr magrittr miniUI readxl rjson Rsamtools shiny]; }; - TIN = derive2 { name="TIN"; version="1.24.0"; sha256="1wmsyxj9vsxl3c8mbzd8h0zvgzrskzqxf5b0r40nd5iky038amxz"; depends=[aroma_affymetrix data_table impute squash stringr WGCNA]; }; - TMixClust = derive2 { name="TMixClust"; version="1.14.0"; sha256="0vf3a81b6xp8bafx0wh3af2x5wyvx2nkq237lzpnhp15h6m9wckq"; depends=[Biobase BiocParallel cluster flexclust gss mvtnorm SPEM zoo]; }; - TNBC_CMS = derive2 { name="TNBC.CMS"; version="1.8.0"; sha256="0qjgsjymgxs68zvkyl37vrdybymfkqdy5hjd7i9nlfa33nmh69pz"; depends=[e1071 forestplot GGally ggplot2 ggpubr GSVA pheatmap pracma quadprog R_utils RColorBrewer SummarizedExperiment survival]; }; - TOAST = derive2 { name="TOAST"; version="1.6.0"; sha256="1k1hn5gp4rhvws2h40mwflsdmlad0qjxixwm1a76xhgpdhkj3cfb"; depends=[corpcor EpiDISH limma nnls SummarizedExperiment]; }; - TPP = derive2 { name="TPP"; version="3.20.1"; sha256="1m0s74xxzxdpizxal0wq6p848qs1v2v7hhqjsjh7wrjmb0ff4k99"; depends=[Biobase biobroom broom data_table doParallel dplyr foreach futile_logger ggplot2 gridExtra knitr limma magrittr MASS mefa nls2 openxlsx plyr purrr RColorBrewer RCurl reshape2 rmarkdown stringr tibble tidyr VennDiagram VGAM]; }; - TPP2D = derive2 { name="TPP2D"; version="1.8.0"; sha256="0vfiap2qw740ll88dhnkc5j95gxw61zqp3z1s7wd7j4pasg13cwc"; depends=[BiocParallel doParallel dplyr foreach ggplot2 limma MASS openxlsx RCurl stringr tidyr]; }; - TRONCO = derive2 { name="TRONCO"; version="2.24.0"; sha256="0cvf7x6hzkfjx4k06dny3s97nha63qws1jxv6p7fa72hsnm4ylik"; depends=[bnlearn cgdsr circlize doParallel foreach gridExtra gtable gtools igraph iterators R_matlab RColorBrewer Rgraphviz scales xtable]; }; - TSCAN = derive2 { name="TSCAN"; version="1.30.0"; sha256="1xpgqafy3irfdhc63qgkim1ydkdf9i912ad4b41yyzdvn8infmyz"; depends=[combinat DelayedArray fastICA ggplot2 gplots igraph Matrix mclust mgcv plyr S4Vectors shiny SingleCellExperiment SummarizedExperiment TrajectoryUtils]; }; - TSRchitect = derive2 { name="TSRchitect"; version="1.18.0"; sha256="02xjp3ibasnwrsrjvs9dplnf8qvlmmy67l3ffadgsjv69fcdxck9"; depends=[AnnotationHub BiocGenerics BiocParallel dplyr GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges readxl Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; - TTMap = derive2 { name="TTMap"; version="1.14.0"; sha256="1kl03hilvpgcxf6an684kn77wa7slf2pp5ksq67bk7fqcqdxyncl"; depends=[Biobase colorRamps rgl SummarizedExperiment]; }; - TVTB = derive2 { name="TVTB"; version="1.18.0"; sha256="1zz14wph4c2nfpcbbfjs0mq3h6ifj8qrlhwhys2858w2yp1bqhvg"; depends=[AnnotationFilter BiocGenerics BiocParallel Biostrings ensembldb ensemblVEP GenomeInfoDb GenomicRanges GGally ggplot2 Gviz IRanges limma reshape2 Rsamtools S4Vectors SummarizedExperiment VariantAnnotation]; }; - TarSeqQC = derive2 { name="TarSeqQC"; version="1.22.0"; sha256="0ym8v2hs2a2b53wb7kp77dbzs1smb5fci9jw52kypjnc23gqbh3q"; depends=[BiocGenerics BiocParallel Biostrings cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 Hmisc IRanges openxlsx plyr reshape2 Rsamtools S4Vectors]; }; - TargetScore = derive2 { name="TargetScore"; version="1.30.0"; sha256="0wjgi2fmdyflnc4shmkj11jfxgsydjm8494q0p9mxbskiyv850mn"; depends=[Matrix pracma]; }; - TargetSearch = derive2 { name="TargetSearch"; version="1.48.0"; sha256="181ggjmqpi0hm2b4r8g7igw13jl8pqh31gv7xy3ppn5f0wsjsnal"; depends=[assertthat ncdf4]; }; - TileDBArray = derive2 { name="TileDBArray"; version="1.2.1"; sha256="1n88c3i0yjqsxrbqrsg5nzx4ryx4b3k1vz5xm0xlnxvzbib3899r"; depends=[DelayedArray Rcpp S4Vectors tiledb]; }; - TimeSeriesExperiment = derive2 { name="TimeSeriesExperiment"; version="1.10.1"; sha256="1095a2ynxcf9xiac5cjzslcbmjnjpbby0vy7d84qagdiq1w6mrhn"; depends=[DESeq2 dplyr dynamicTreeCut edgeR ggplot2 Hmisc limma magrittr proxy S4Vectors SummarizedExperiment tibble tidyr vegan viridis]; }; - TimiRGeN = derive2 { name="TimiRGeN"; version="1.2.0"; sha256="06ddrkvppbx1fwh66ycxk1vprk01bfq40671s3n7jbfldfysnyjl"; depends=[biomaRt clusterProfiler dplyr FreqProf ggdendro gghighlight ggplot2 gplots gtools igraph Mfuzz MultiAssayExperiment RCy3 readxl reshape2 rWikiPathways scales stringr tidyr]; }; - TissueEnrich = derive2 { name="TissueEnrich"; version="1.12.0"; sha256="16zq2z1mp0nal0a9h8rq398y90clabkzd503li67yb8iz21n4lin"; depends=[dplyr ensurer ggplot2 GSEABase SummarizedExperiment tidyr]; }; - TitanCNA = derive2 { name="TitanCNA"; version="1.30.0"; sha256="0j1pra14gsadp684hxz2w4cz8c64p7hhajkakm5n2m3019ws96gw"; depends=[BiocGenerics data_table dplyr foreach GenomeInfoDb GenomicRanges IRanges VariantAnnotation]; }; - TnT = derive2 { name="TnT"; version="1.14.0"; sha256="1gcs8vcqayzi0vg05zqamn7xpc7ny13k99zc60rcz5ln31srq0h2"; depends=[Biobase data_table GenomeInfoDb GenomicRanges htmlwidgets IRanges jsonlite knitr S4Vectors]; }; - ToxicoGx = derive2 { name="ToxicoGx"; version="1.2.1"; sha256="0c5bgg73k7x5zqhvpjqfifzpsn8671ag0051d662ws2ydmycp7vw"; depends=[assertthat Biobase BiocParallel caTools CoreGx data_table downloader dplyr ggplot2 jsonlite limma magrittr reshape2 S4Vectors scales SummarizedExperiment tibble tidyr]; }; - TraRe = derive2 { name="TraRe"; version="1.0.0"; sha256="01rjslihmis6l0x4c4g03rh7qfgqidbwa0gdqz0n8pgjydy519nl"; depends=[BiocParallel dqrng ggplot2 glmnet gplots gtools hash igraph matrixStats pvclust R_utils SummarizedExperiment vbsr]; }; - TrajectoryGeometry = derive2 { name="TrajectoryGeometry"; version="1.0.0"; sha256="0yjscggc0ysnznzqk3inm0mm2k0nyabxg71h3fql6nq4jzdn3r84"; depends=[ggplot2 pracma rgl]; }; - TrajectoryUtils = derive2 { name="TrajectoryUtils"; version="1.0.0"; sha256="1b7mg3ypp1ay98cav47h9vn692lx0n9b5b0hpansgnkr5prb823b"; depends=[igraph Matrix S4Vectors SingleCellExperiment SummarizedExperiment]; }; - TransView = derive2 { name="TransView"; version="1.36.0"; sha256="1n1kfvxf2wixyv5qlgmcmqdd44d3vkkywdvc8w531gjv8cxbpn7a"; depends=[BiocGenerics GenomicRanges gplots IRanges Rhtslib S4Vectors zlibbioc]; }; - Travel = derive2 { name="Travel"; version="1.0.0"; sha256="1r4ydwxf8h45isd5yshfpl5b8s739ihlkazq9rpnvbrrrm3sv1lj"; depends=[Rcpp]; }; - TreeAndLeaf = derive2 { name="TreeAndLeaf"; version="1.4.2"; sha256="0kjasyx52n5gafil7vminssynarngna705d70rbs5c9pg9ww4bzi"; depends=[ape igraph RedeR]; }; - TreeSummarizedExperiment = derive2 { name="TreeSummarizedExperiment"; version="2.0.3"; sha256="08wyapshn3r1b0hbcmrjgw9vqbgv5xfkdwps8hjpf7xxbldacscz"; depends=[ape BiocGenerics BiocParallel Biostrings dplyr IRanges rlang S4Vectors SingleCellExperiment SummarizedExperiment treeio]; }; - Trendy = derive2 { name="Trendy"; version="1.14.0"; sha256="0idsac35j1wf0n8r6sb3mgqm7ldga05mp7xj429v7i9lqxswqccd"; depends=[BiocParallel DT gplots magrittr S4Vectors segmented shiny shinyFiles SummarizedExperiment]; }; - TurboNorm = derive2 { name="TurboNorm"; version="1.40.0"; sha256="1mblkfdic863sk88ic7g6z2fjkfj6hpz1rki9irid47w644fnxf6"; depends=[affy convert lattice limma marray]; }; - TypeInfo = derive2 { name="TypeInfo"; version="1.58.0"; sha256="0l71asilfz0868d792s64fsxw63jg2s6iqx215m9mix8cszbh4wy"; depends=[]; }; - UMI4Cats = derive2 { name="UMI4Cats"; version="1.2.1"; sha256="1iqrnl9bl9rgcpm6wb8cg70hdm39bbl2pin59yiivjzm0zwyvwxp"; depends=[annotate BiocFileCache BiocGenerics Biostrings BSgenome cowplot DESeq2 dplyr fda GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges magick magrittr org_Hs_eg_db R_utils rappdirs Rbowtie2 RColorBrewer regioneR reshape2 rlang Rsamtools S4Vectors scales ShortRead stringr SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene zoo]; }; - UNDO = derive2 { name="UNDO"; version="1.34.0"; sha256="0pys5nfznspfm45pacfygfafxr93pj76wxa9ij1sj5xhn0sr1wg0"; depends=[Biobase BiocGenerics boot MASS nnls]; }; - Ularcirc = derive2 { name="Ularcirc"; version="1.10.0"; sha256="1nb902vi30gcs8msdm4aslvv0qnbaz4pl3zsxwxg8s8p1hq8q88k"; depends=[AnnotationDbi AnnotationHub BiocGenerics Biostrings BSgenome data_table DT GenomeInfoDb GenomeInfoDbData GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel gsubfn mirbase_db moments Organism_dplyr S4Vectors shiny shinydashboard shinyFiles shinyjs Sushi yaml]; }; - UniProt_ws = derive2 { name="UniProt.ws"; version="2.32.0"; sha256="153wz9pwzijah0qjaxmss0rkbwlnbihpjmliggs1ns84nya4v8ls"; depends=[AnnotationDbi BiocFileCache BiocGenerics rappdirs RCurl RSQLite]; }; - Uniquorn = derive2 { name="Uniquorn"; version="2.12.0"; sha256="0jxi4d0zcypcc3kvvzhdw9bbzf719s54wwq3sgkwkmnwhb027xix"; depends=[doParallel foreach GenomicRanges IRanges R_utils stringr VariantAnnotation WriteXLS]; }; - VCFArray = derive2 { name="VCFArray"; version="1.8.0"; sha256="0y1rgncfa1kyqzqk194c8lfqjhi0qlb4lljmba9ax82iican5pcz"; depends=[BiocGenerics DelayedArray GenomicFiles GenomicRanges Rsamtools S4Vectors VariantAnnotation]; }; - VERSO = derive2 { name="VERSO"; version="1.2.0"; sha256="1jgycqm1pmz5is8rn376lr0lmivkfqp1bkpbilm9d2z2ibzhnfzz"; depends=[ape Rfast]; }; - VaSP = derive2 { name="VaSP"; version="1.4.0"; sha256="0v2v0gp6xghma36z9bs4yqjgw4cnzamr5jl4cybpbg7c54jh5czs"; depends=[ballgown cluster GenomeInfoDb GenomicAlignments GenomicRanges IRanges matrixStats Rsamtools S4Vectors Sushi]; }; - VanillaICE = derive2 { name="VanillaICE"; version="1.54.0"; sha256="0f118783a1rp0j00ddrrcgj1lg1rfz4wj2kx4fccq3nqr2n4j0bz"; depends=[Biobase BiocGenerics BSgenome_Hsapiens_UCSC_hg18 crlmm data_table foreach GenomeInfoDb GenomicRanges IRanges lattice MatrixGenerics matrixStats oligoClasses S4Vectors SummarizedExperiment]; }; - VarCon = derive2 { name="VarCon"; version="1.0.0"; sha256="1bz2ppyysni1aj08024qbp9k55wwm73lxga2f0ln8hm8ik3zi8kh"; depends=[Biostrings BSgenome GenomicRanges ggplot2 IRanges shiny shinycssloaders shinyFiles]; }; - VariantAnnotation = derive2 { name="VariantAnnotation"; version="1.38.0"; sha256="0c9r00j8a3bs6n0dv4wi17jc1ljzvr3r2bi4h9axhcsf2ip906rh"; depends=[AnnotationDbi Biobase BiocGenerics Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges MatrixGenerics Rhtslib Rsamtools rtracklayer S4Vectors SummarizedExperiment XVector zlibbioc]; }; - VariantExperiment = derive2 { name="VariantExperiment"; version="1.6.0"; sha256="0p9ds0spm7bi4l9scfvrn78v8jfdd7nsal344bq246pfpxyd567i"; depends=[Biostrings DelayedArray DelayedDataFrame GDSArray gdsfmt GenomicRanges IRanges S4Vectors SeqArray SeqVarTools SNPRelate SummarizedExperiment]; }; - VariantFiltering = derive2 { name="VariantFiltering"; version="1.28.0"; sha256="0abhrk53csd9jz9sv4q1qr74jax9mbj2icbz1iilf1123nvnjypd"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicFeatures GenomicRanges GenomicScores graph Gviz IRanges RBGL Rsamtools S4Vectors shiny shinyjs shinythemes shinyTree SummarizedExperiment VariantAnnotation XVector]; }; - VariantTools = derive2 { name="VariantTools"; version="1.34.0"; sha256="1gpzrln2clfrja8rzxhsis6bi1xqglh3h2lhvqlnrx4lqxhbkv9c"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicRanges IRanges Matrix Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; - VegaMC = derive2 { name="VegaMC"; version="3.30.0"; sha256="0wah3679zyx5q4p3fq5nv1z86nsqgp7n4k40l42hflc5bb3adrgx"; depends=[Biobase biomaRt]; }; - VennDetail = derive2 { name="VennDetail"; version="1.8.0"; sha256="0y24vrax9hp2xjycdr74phs3032hhjaf6hvmh0xdx891val91f6h"; depends=[dplyr futile_logger ggplot2 magrittr purrr tibble UpSetR VennDiagram]; }; - ViSEAGO = derive2 { name="ViSEAGO"; version="1.6.0"; sha256="0adyxxvp66pb69hbxs6cg5ny9ggixw7fn3p5s30wfd8xp7d3zf38"; depends=[AnnotationDbi AnnotationForge biomaRt data_table dendextend DiagrammeR DT dynamicTreeCut fgsea ggplot2 GO_db GOSemSim heatmaply htmlwidgets igraph plotly processx R_utils RColorBrewer scales topGO UpSetR]; }; - VplotR = derive2 { name="VplotR"; version="1.2.0"; sha256="099z7267bpcw52xb3kd61mj0096knpgalbgf62d2pvdx74vd793l"; depends=[cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges magrittr RColorBrewer reshape2 Rsamtools S4Vectors zoo]; }; - Wrench = derive2 { name="Wrench"; version="1.10.0"; sha256="0yssmqayaryrc0asjjqxdipqdfg309llrzldx38jrfgdsza6bvs0"; depends=[limma locfit matrixStats]; }; - XCIR = derive2 { name="XCIR"; version="1.6.0"; sha256="0cavql8fyw7vrmkdrd7cn1l5pmlgysqcfnbmgjc9fam81h3lqmcs"; depends=[biomaRt data_table ggplot2 IRanges readxl S4Vectors seqminer VariantAnnotation]; }; - XDE = derive2 { name="XDE"; version="2.38.0"; sha256="0wdc0lgjijggxbqkbxcy2hlr3kyrxydq7dd1a4mqmc2sqjnfn3wk"; depends=[Biobase BiocGenerics genefilter GeneMeta gtools mvtnorm RColorBrewer siggenes]; }; - XINA = derive2 { name="XINA"; version="1.10.0"; sha256="00h5r2iwyy5w4mcga6155gllbiy834bfzkmy60pzsckm8j7zzs95"; depends=[alluvial ggplot2 gridExtra igraph mclust plyr STRINGdb]; }; - XNAString = derive2 { name="XNAString"; version="1.0.2"; sha256="11jxmjyk6riivgsfjvwwdq9d2h9787dgz27vlib9khr1q40vh5ia"; depends=[Biostrings BSgenome data_table formattable future_apply GenomicRanges IRanges Rcpp S4Vectors stringi stringr]; }; - XVector = derive2 { name="XVector"; version="0.32.0"; sha256="1cw34gd9iaspl0v737xl7rngq63zrj03a5ngai15ggrnv1sq2aqr"; depends=[BiocGenerics IRanges S4Vectors zlibbioc]; }; - Xeva = derive2 { name="Xeva"; version="1.8.0"; sha256="09a3f81fdbak94q8v11ww6s55fyzjqdynnd7jdpxrkzmg4f524y9"; depends=[BBmisc Biobase ComplexHeatmap doParallel downloader ggplot2 nlme PharmacoGx Rmisc scales]; }; - YAPSA = derive2 { name="YAPSA"; version="1.18.0"; sha256="1xfkgjlm0rxz82qcaqzx95cwirxifd9dsswjg3zcqmz03v7a0gz2"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 circlize ComplexHeatmap corrplot dendextend doParallel dplyr GenomeInfoDb GenomicRanges GetoptLong ggbeeswarm ggplot2 gridExtra gtrellis KEGGREST limSolve magrittr PMCMR pracma reshape2 SomaticSignatures VariantAnnotation]; }; - a4 = derive2 { name="a4"; version="1.40.0"; sha256="0bwn185admy5k99fkd2dhhvy7x1f75r0mqn5k24dbbg0paw6nnr8"; depends=[a4Base a4Classif a4Core a4Preproc a4Reporting]; }; - a4Base = derive2 { name="a4Base"; version="1.40.0"; sha256="101w4i0w8n7qhki22qr8l8wk8w6zalzmcywqm2g4238qv7xbnr8p"; depends=[a4Core a4Preproc annaffy Biobase genefilter glmnet gplots limma mpm multtest]; }; - a4Classif = derive2 { name="a4Classif"; version="1.40.0"; sha256="1lz85bys5dp5d1ir9c9c4wy85wkk62s14niyzzxaqrxpsji2p2iw"; depends=[a4Core a4Preproc Biobase glmnet pamr ROCR varSelRF]; }; - a4Core = derive2 { name="a4Core"; version="1.40.0"; sha256="00fi753nsayv0xspavw8r9ni1sim8ng33hp3d3kj2b8ihygd1s10"; depends=[Biobase glmnet]; }; - a4Preproc = derive2 { name="a4Preproc"; version="1.40.0"; sha256="1jibm2f5glzsrvl64hxc5sf59d4w6ry0f663p619hfr44mi1mpri"; depends=[Biobase BiocGenerics]; }; - a4Reporting = derive2 { name="a4Reporting"; version="1.40.0"; sha256="09jjfby5znmg2fdkhpbinx2v21zrfa44qq7cylcn9ipffqx3pk86"; depends=[xtable]; }; - aCGH = derive2 { name="aCGH"; version="1.70.0"; sha256="0x1d3byyapzn1nn4s1capr6a0krhail4bdgjrcwn0rv95fd2mzi1"; depends=[Biobase cluster multtest survival]; }; - abseqR = derive2 { name="abseqR"; version="1.10.0"; sha256="1xvk84gd1lfq1icrfwwd6y79zywrisfnc3knprigzzax31aks32c"; depends=[BiocParallel BiocStyle circlize flexdashboard ggcorrplot ggdendro ggplot2 gridExtra knitr plotly plyr png RColorBrewer reshape2 rmarkdown stringr vegan VennDiagram]; }; - acde = derive2 { name="acde"; version="1.22.0"; sha256="19ys7qc167s1fdma6ija9ach1a2i5al4bz6h6f45a62aryi7ppxw"; depends=[boot]; }; - adSplit = derive2 { name="adSplit"; version="1.62.0"; sha256="0l90kd88z7i65rlhzi571cw70jff2zl63029c9sfvkkk1yc2v7jv"; depends=[AnnotationDbi Biobase cluster GO_db KEGGREST multtest]; }; - adductomicsR = derive2 { name="adductomicsR"; version="1.8.0"; sha256="1k2ns0xmdwbfwnjfafa3vc20nydqqgkm6kri49aa2dhlwanh3d9k"; depends=[adductData ade4 AnnotationHub bootstrap data_table doSNOW dplyr DT ExperimentHub fastcluster foreach fpc mzR OrgMassSpecR pastecs pracma RcppEigen reshape2 rvest smoother zoo]; }; - affxparser = derive2 { name="affxparser"; version="1.64.1"; sha256="0lr0kmp087j2g4i5kd7rh8a038ymp6z82861lyql2fwk5dh80043"; depends=[]; }; - affy = derive2 { name="affy"; version="1.70.0"; sha256="0vz5y92gqcm0qk57qlba85bk683lzdr7vkmxv109rq6i17vdkkrm"; depends=[affyio Biobase BiocGenerics BiocManager preprocessCore zlibbioc]; }; - affyContam = derive2 { name="affyContam"; version="1.50.0"; sha256="0242ga68wrdk1kcmxfdbq73a0d3zhrzdlzkzphfg3q0zjbvg49jj"; depends=[affy affydata Biobase]; }; - affyILM = derive2 { name="affyILM"; version="1.44.0"; sha256="1q26cyq02y443v6phl73ccjn9l0a2lry51xr34wnyk16v5w5v8nn"; depends=[affxparser affy Biobase gcrma]; }; - affyPLM = derive2 { name="affyPLM"; version="1.68.0"; sha256="0w2c605kljf6s8fvpb3420izpjkiwgab849xv0lph9zxdf5xwl32"; depends=[affy Biobase BiocGenerics gcrma preprocessCore zlibbioc]; }; - affyPara = derive2 { name="affyPara"; version="1.51.0"; sha256="01165f84snc3ksk0ghw631i2l5jklp4n826jwy5926wvxy3zlwz0"; depends=[affy affyio aplpack snow vsn]; }; - affycomp = derive2 { name="affycomp"; version="1.68.0"; sha256="07my5scdh6h0y1bx1h9y5m4fa8bnmw389f83gkb7cf19w4vp36b2"; depends=[Biobase]; }; - affycoretools = derive2 { name="affycoretools"; version="1.64.0"; sha256="1dx861spr3kn1dxwhf43s5l1r7bmrq0h6538l3q64iiwzzc6krdh"; depends=[affy AnnotationDbi Biobase BiocGenerics DBI edgeR gcrma ggplot2 Glimma GOstats gplots hwriter lattice limma oligoClasses ReportingTools RSQLite S4Vectors xtable]; }; - affyio = derive2 { name="affyio"; version="1.62.0"; sha256="07kibqsm888g06qqqa4648ph877kriy74kprbri8nyx83y8aspjr"; depends=[zlibbioc]; }; - affylmGUI = derive2 { name="affylmGUI"; version="1.66.0"; sha256="1bib92p6iyf3gfgwmqnw864zi3k7wy46l17wis0h898ywbvnhbka"; depends=[affy affyio affyPLM AnnotationDbi BiocGenerics BiocManager gcrma limma R2HTML tkrplot xtable]; }; - aggregateBioVar = derive2 { name="aggregateBioVar"; version="1.2.0"; sha256="09mq7ypc7miablslfsbx1s5nz17ams2ri2ynbbs2s1v50risspbq"; depends=[Matrix rlang S4Vectors SingleCellExperiment SummarizedExperiment tibble]; }; - agilp = derive2 { name="agilp"; version="3.24.0"; sha256="05ks3l3j74n5hgqsywavcylrk7lyg07b92c5qk6krvsckm23ksgv"; depends=[]; }; - airpart = derive2 { name="airpart"; version="1.0.1"; sha256="0cyyk0w6cyx0rw0gd9z7ha02b1v79x7fz04vvknn0ylkvhhdr9i7"; depends=[apeglm clue ComplexHeatmap dplyr dynamicTreeCut emdbook forestplot ggplot2 lpSolve matrixStats mclust pbapply plyr RColorBrewer rlang S4Vectors scater SingleCellExperiment smurf SummarizedExperiment]; }; - alevinQC = derive2 { name="alevinQC"; version="1.8.0"; sha256="1aq3j1k66sl09nfalgy18xns42lpwc9wph052096yr5rfqqq0bk6"; depends=[cowplot dplyr DT GGally ggplot2 rjson rlang rmarkdown shiny shinydashboard tximport]; }; - alpine = derive2 { name="alpine"; version="1.18.0"; sha256="157g24rf5pb9k2l3d608sp9kk9m8k39aipa39lg6qdl92qrqv6a1"; depends=[Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph IRanges RBGL Rsamtools S4Vectors speedglm stringr SummarizedExperiment]; }; - alsace = derive2 { name="alsace"; version="1.28.0"; sha256="1idjymd39cnjfmw31ay6kh0y8z2p3c1kq3dnklzf5w4q6cpiaqqq"; depends=[ALS ptw]; }; - altcdfenvs = derive2 { name="altcdfenvs"; version="2.54.0"; sha256="0b7a9cqf33klazz7301agifwdqnk41jk58r69s70bygl51lrx87a"; depends=[affy Biobase BiocGenerics Biostrings hypergraph makecdfenv S4Vectors]; }; - amplican = derive2 { name="amplican"; version="1.14.0"; sha256="11brvgcp6x432hn1q8q26agnf8nbgrr4zziv930jly2lwa1i2865"; depends=[BiocGenerics BiocParallel Biostrings clusterCrit data_table dplyr GenomeInfoDb GenomicRanges ggplot2 ggthemes gridExtra gtable IRanges knitr Matrix matrixStats Rcpp rmarkdown S4Vectors ShortRead stringr waffle]; }; - animalcules = derive2 { name="animalcules"; version="1.8.1"; sha256="1vfnpd2r6pxqdm5s68xdaph1qa2p0zzrimkg2qmvr8vb26vsk10z"; depends=[ape assertthat biomformat caret covr DESeq2 dplyr DT forcats ggplot2 glmnet GUniFrac lattice limma magrittr Matrix MultiAssayExperiment plotly plotROC reactable rentrez reshape2 S4Vectors scales shiny shinyjs SummarizedExperiment tibble tsne umap vegan XML]; }; - annaffy = derive2 { name="annaffy"; version="1.64.2"; sha256="03y633vgxprd2abhanj4sanmb4ymz7az5aiasxn6wjzawiqjdcb1"; depends=[AnnotationDbi Biobase BiocManager DBI GO_db]; }; - annmap = derive2 { name="annmap"; version="1.34.0"; sha256="0yarbfvxy44zpydi89gkw16cq09p0md2p0pqn585m3ms0mcxnyh4"; depends=[Biobase BiocGenerics DBI digest genefilter GenomicRanges IRanges lattice RMySQL Rsamtools]; }; - annotate = derive2 { name="annotate"; version="1.70.0"; sha256="13ny596wh65sw7dbw0zd4h84d6k1w99g91c4sqy83mdzgpv73sz7"; depends=[AnnotationDbi Biobase BiocGenerics DBI httr XML xtable]; }; - annotationTools = derive2 { name="annotationTools"; version="1.66.0"; sha256="18dd8saqx17fplvv5sbfz4p9fy7ksy3n9348rd3qlczihcrh9i3w"; depends=[Biobase]; }; - annotatr = derive2 { name="annotatr"; version="1.18.1"; sha256="1ls1qdfppcxysggi3bghrnspb5a3s40pm2mj4x0whc7c40cf90mg"; depends=[AnnotationDbi AnnotationHub dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges readr regioneR reshape2 rtracklayer S4Vectors]; }; - anota = derive2 { name="anota"; version="1.40.0"; sha256="039bmcv5l44gszb6xapbihp3mfqdaaa8mfc05y702p78i7x93g5y"; depends=[multtest qvalue]; }; - anota2seq = derive2 { name="anota2seq"; version="1.14.0"; sha256="08pmw7zmlwpshsdx1xrplx8cm78wh67hxyjj80jp4g6fx35f6m22"; depends=[DESeq2 edgeR limma multtest qvalue RColorBrewer SummarizedExperiment]; }; - antiProfiles = derive2 { name="antiProfiles"; version="1.32.0"; sha256="065q4ifqaahb3aff8qqknvn135av4vs527bpj7ap5cwhqg93j6hb"; depends=[locfit matrixStats]; }; - apComplex = derive2 { name="apComplex"; version="2.58.0"; sha256="1198gks7rd6wq74d2shz41w40dqv1nwv3ayn49g6nww10al7cmqg"; depends=[graph org_Sc_sgd_db RBGL Rgraphviz]; }; - apeglm = derive2 { name="apeglm"; version="1.14.0"; sha256="1xld6ar440achik4dbd7vhiw6jfj0sb96jm52n7hav5bv4gag3mh"; depends=[emdbook GenomicRanges Rcpp RcppEigen RcppNumerical SummarizedExperiment]; }; - appreci8R = derive2 { name="appreci8R"; version="1.10.0"; sha256="1ar199yka7n9w9j0j76v4lybjx0yhmjrjzcdvqywragjqzkf2w10"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 COSMIC_67 DT GenomicFeatures GenomicRanges GenomicScores Homo_sapiens IRanges MafDb_1Kgenomes_phase3_hs37d5 MafDb_ExAC_r1_0_hs37d5 MafDb_gnomADex_r2_1_hs37d5 openxlsx PolyPhen_Hsapiens_dbSNP131 rentrez Rsamtools rsnps S4Vectors seqinr shiny shinyjs SIFT_Hsapiens_dbSNP137 SNPlocs_Hsapiens_dbSNP144_GRCh37 stringr SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation XtraSNPlocs_Hsapiens_dbSNP144_GRCh37]; }; - aroma_light = derive2 { name="aroma.light"; version="3.22.0"; sha256="1yvq6l1p8cpijvlib4fn9y88ihn0gaalrmgx82jgrfmnszkqn3y5"; depends=[matrixStats R_methodsS3 R_oo R_utils]; }; - arrayMvout = derive2 { name="arrayMvout"; version="1.50.0"; sha256="0n0rsjjkf59d4mq97j305yflal6y96gqssds04sk8xc596xkbv67"; depends=[affy affyContam Biobase lumi mdqc parody]; }; - arrayQuality = derive2 { name="arrayQuality"; version="1.70.0"; sha256="19c8n48977xwsk9lq4j8dyp0hlxas58ln77z7jyp3p0r2s52c51s"; depends=[gridBase hexbin limma marray RColorBrewer]; }; - arrayQualityMetrics = derive2 { name="arrayQualityMetrics"; version="3.48.0"; sha256="1a7zm2myrizpn52lx07d7n9kaz358fsfdbm49546lanwhad3pi2v"; depends=[affy affyPLM beadarray Biobase genefilter gridSVG Hmisc hwriter lattice latticeExtra limma RColorBrewer setRNG svglite vsn XML]; }; - artMS = derive2 { name="artMS"; version="1.10.2"; sha256="1p0adqi8vh7nm207l18z981ghkb5x6280iswmy7plil5cv3dn17f"; depends=[AnnotationDbi bit64 circlize cluster corrplot data_table dplyr getopt ggdendro ggplot2 ggrepel gplots limma MSstats openxlsx org_Hs_eg_db pheatmap plotly plyr RColorBrewer scales seqinr stringr tidyr UpSetR VennDiagram yaml]; }; - atSNP = derive2 { name="atSNP"; version="1.8.0"; sha256="0adq27bfhy0br9948sdvxv829pvahl1cimqd4fc62pdx8caika8v"; depends=[BiocFileCache BiocParallel BSgenome data_table ggplot2 lifecycle motifStack rappdirs Rcpp testthat]; }; - attract = derive2 { name="attract"; version="1.44.0"; sha256="0h10lbjq73xsdgp631hkac88zl98r20vcr0xmlzg2f1jwq68gpfc"; depends=[AnnotationDbi Biobase cluster GOstats KEGGREST limma org_Hs_eg_db reactome_db]; }; - autonomics = derive2 { name="autonomics"; version="1.0.1"; sha256="12y5gb1qxjf5dc6h8vbs8yyhsnhbg94yc5giydn4f3v16il3d2d9"; depends=[abind assertive BiocFileCache BiocGenerics colorspace data_table edgeR ggplot2 ggrepel gridExtra limma magrittr matrixStats MultiAssayExperiment pcaMethods R_utils rappdirs readxl rlang S4Vectors scales stringi SummarizedExperiment tidyr]; }; - awst = derive2 { name="awst"; version="1.0.0"; sha256="0m0h4xi0i3v7kaycw8qppji5f9qcx8w100y15czj1mpq1z7pnchx"; depends=[SummarizedExperiment]; }; - bacon = derive2 { name="bacon"; version="1.20.0"; sha256="1yp0675n1g8rxdjdd7w8al5c9jq96h0kfm8218mc50z0p2fasgbj"; depends=[BiocParallel ellipse ggplot2]; }; - ballgown = derive2 { name="ballgown"; version="2.24.0"; sha256="0ff8z4pfgzai2q4aafclg36bhsi9jwl9xhh1p9fqhmikisscq7i1"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges limma RColorBrewer rtracklayer S4Vectors sva]; }; - bambu = derive2 { name="bambu"; version="1.2.1"; sha256="12zpqksvbn03qh366paxb7nrlimcam5p38iqm21dpzgn5zf42syn"; depends=[BiocGenerics BiocParallel data_table dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges glmnet IRanges Rcpp RcppArmadillo Rsamtools S4Vectors SummarizedExperiment]; }; - bamsignals = derive2 { name="bamsignals"; version="1.24.0"; sha256="1ljrip0jlxjcljqac7vzvwqbcqil5v4f4s4bhpq4akvdkshas6mn"; depends=[BiocGenerics GenomicRanges IRanges Rcpp Rhtslib zlibbioc]; }; - banocc = derive2 { name="banocc"; version="1.16.0"; sha256="1vhq57v80fxlix5j5rznp37ib82nnhckh1imwc8appjjkya1gv8j"; depends=[coda mvtnorm rstan stringr]; }; - barcodetrackR = derive2 { name="barcodetrackR"; version="1.0.0"; sha256="13hypkvyjd9kgzi6lrkm0m9rc1yvxvnk8y84i8zqja5nsasb47sf"; depends=[circlize cowplot dplyr ggdendro ggplot2 ggridges magrittr plyr proxy RColorBrewer rlang S4Vectors scales shiny SummarizedExperiment tibble tidyr vegan viridis]; }; - basecallQC = derive2 { name="basecallQC"; version="1.16.0"; sha256="1i8pwd5d68v9iwv9rmckqxpppx2pa90w1wrws55l1dpkijvg8zmc"; depends=[data_table dplyr DT ggplot2 knitr lazyeval magrittr prettydoc raster rmarkdown ShortRead stringr tidyr XML yaml]; }; - basilisk = derive2 { name="basilisk"; version="1.4.0"; sha256="1nzbn3f2jzvg3a3m6wgksi4cvamqas2q7csdk4ir7fcirasf536v"; depends=[basilisk_utils dir_expiry reticulate]; }; - basilisk_utils = derive2 { name="basilisk.utils"; version="1.4.0"; sha256="0qbm6rj6h059hakflbwz4j4f59311jhbk5dnpx11kyixh5pgjk7v"; depends=[dir_expiry]; }; - batchelor = derive2 { name="batchelor"; version="1.8.1"; sha256="1bkk69b5llkmvmpsnhymwjm2szmzypgszfsw8mak1b5ms5zf8lr0"; depends=[beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats igraph Matrix Rcpp ResidualMatrix S4Vectors ScaledMatrix scuttle SingleCellExperiment SummarizedExperiment]; }; - bayNorm = derive2 { name="bayNorm"; version="1.10.0"; sha256="1xynvcv1dsqbg96bhr3kajv19i2lad66cqlk2bqh69vaxw5nwkb6"; depends=[BB BiocParallel doSNOW fitdistrplus foreach iterators locfit MASS Matrix Rcpp RcppArmadillo RcppProgress SingleCellExperiment SummarizedExperiment]; }; - baySeq = derive2 { name="baySeq"; version="2.26.0"; sha256="0hyc0sl2nf18bz0jxbzim0v41zwh2rnnr7l3p6zkk9wnw5gn7bbc"; depends=[abind edgeR GenomicRanges]; }; - bcSeq = derive2 { name="bcSeq"; version="1.14.0"; sha256="0z05w7sshvf46gjydfi6gxzfm5klghk6dwm6mypnf0pxrkdvk26i"; depends=[Biostrings Matrix Rcpp]; }; - beachmat = derive2 { name="beachmat"; version="2.8.1"; sha256="06bpfpddsl49csxrs8hlx5pv0absc2wdcparchf8qqaqydazwci2"; depends=[BiocGenerics DelayedArray Matrix Rcpp]; }; - beadarray = derive2 { name="beadarray"; version="2.42.0"; sha256="10gzkkwlnx267fcvrj3f8znvg8lkm3db7p2l11pbhgxh0mbq8qi5"; depends=[AnnotationDbi BeadDataPackR Biobase BiocGenerics GenomicRanges ggplot2 hexbin illuminaio IRanges limma reshape2]; }; - beadarraySNP = derive2 { name="beadarraySNP"; version="1.58.0"; sha256="0bf4mc59y9mck450i16bpkk6pdkmaxscm7ds1q008892vwzk9h2q"; depends=[Biobase quantsmooth]; }; - bgx = derive2 { name="bgx"; version="1.58.0"; sha256="18n6j2ihv85rhai5sf5k3mwf9nkc2nl2sinx3rrs6sbl529g4mw4"; depends=[affy Biobase gcrma Rcpp]; }; - bigPint = derive2 { name="bigPint"; version="1.8.0"; sha256="0yrg9x1a92zmz7j5hk77cph1jg82mkpr7k7qi9fdr6z5nqq6fgz6"; depends=[DelayedArray dplyr GGally ggplot2 gridExtra hexbin Hmisc htmlwidgets plotly plyr RColorBrewer reshape shiny shinycssloaders shinydashboard stringr SummarizedExperiment tidyr]; }; - bigmelon = derive2 { name="bigmelon"; version="1.18.0"; sha256="061f0hc4m4nvdr6298pg3inpx1z2bpsm9nlxqs3v7n58q15xyzri"; depends=[Biobase BiocGenerics gdsfmt GEOquery methylumi minfi wateRmelon]; }; - bioCancer = derive2 { name="bioCancer"; version="1.20.02"; sha256="1phiq5829lq4dx0dfgw4l0z7kwkqrbjb19ldv32b2ay18aax067x"; depends=[AlgDesign AnnotationDbi Biobase cgdsr clusterProfiler DiagrammeR DOSE dplyr DT geNetClassifier GO_db htmlwidgets org_Bt_eg_db org_Hs_eg_db plyr r_import radiant_data reactome_db ReactomePA shiny shinythemes tibble visNetwork XML]; }; - bioDist = derive2 { name="bioDist"; version="1.64.0"; sha256="1y1x9q9aa76gbhsyfn638rxp5icjvq30fv3a4205xh7g5jwlf6yw"; depends=[Biobase KernSmooth]; }; - bioassayR = derive2 { name="bioassayR"; version="1.30.0"; sha256="1mlv80w8a7l8cii3dfqvanvh0qdqvcg8c1iiq4xlyvkjxfs64ka1"; depends=[BiocGenerics ChemmineR DBI Matrix rjson RSQLite XML]; }; - biobroom = derive2 { name="biobroom"; version="1.24.0"; sha256="1ybyhmrcvj6k1laxw9bc8jbn533frkzh9k8kl1ibd5pi368rfqzn"; depends=[Biobase broom dplyr tidyr]; }; - biobtreeR = derive2 { name="biobtreeR"; version="1.4.0"; sha256="0pynx4ps1qxsn13ba6zyg6h5dqlp2y7qish67m7sdjns079zh061"; depends=[httpuv httr jsonlite stringi]; }; - biocGraph = derive2 { name="biocGraph"; version="1.54.0"; sha256="12bmj9kdlylp02cfwviak7y323ndccl2694rvi4cdg4vsx7v3ya3"; depends=[BiocGenerics geneplotter graph Rgraphviz]; }; - biocViews = derive2 { name="biocViews"; version="1.60.0"; sha256="0pc5ll59vm8a9s1nrdc7p9wk11a52rrz669fsrrqd8qapa8p6wfd"; depends=[Biobase BiocManager graph RBGL RCurl RUnit XML]; }; - biocthis = derive2 { name="biocthis"; version="1.2.0"; sha256="08awghsg7q22csb0j9dr8dpb1vkn9gcs9qnhhljxifkw2ahbqia4"; depends=[BiocManager fs glue rlang styler usethis]; }; - biodb = derive2 { name="biodb"; version="1.0.4"; sha256="1apnbr5p619nsrhd2drm6arj69sw0wijv8ap7dfrndqkffrpbfmx"; depends=[chk jsonlite lgr lifecycle openssl plyr progress R6 rappdirs Rcpp RCurl RSQLite stringr testthat withr XML yaml]; }; - biomaRt = derive2 { name="biomaRt"; version="2.48.3"; sha256="096s243yzbhhz3wsm7azml5sznqczmcpi5g0gnb02mah1przczfx"; depends=[AnnotationDbi BiocFileCache digest httr progress rappdirs stringr XML xml2]; }; - biomformat = derive2 { name="biomformat"; version="1.20.0"; sha256="1wgshkddxbmpsihpkm0dp7vqp59ns6iqbx574y80n2pxb8dx8sy9"; depends=[jsonlite Matrix plyr rhdf5]; }; - biomvRCNS = derive2 { name="biomvRCNS"; version="1.32.0"; sha256="0wyzj422smr4m9mswzn9inc1sn86pnia7jmd6k28nd2a7fjyrm16"; depends=[GenomicRanges Gviz IRanges mvtnorm]; }; - biosigner = derive2 { name="biosigner"; version="1.20.0"; sha256="159fbkymn92li7dinsm56nsacjp8wnhsljv7airgs9m82p8wd5sl"; depends=[Biobase e1071 MultiDataSet randomForest ropls]; }; - biotmle = derive2 { name="biotmle"; version="1.16.0"; sha256="01smkmbv40yprgrgi2gjnmi8ncqyrlkfdxsh33ki20amcx32nc7f"; depends=[assertthat BiocGenerics BiocParallel doFuture dplyr drtmle future ggplot2 ggsci limma S4Vectors SummarizedExperiment superheat tibble]; }; - biovizBase = derive2 { name="biovizBase"; version="1.40.0"; sha256="14jyyg3ggdhaqhp0j4qf6dapykh76fygbaa4lr7czqbc5mr0iw23"; depends=[AnnotationDbi AnnotationFilter BiocGenerics Biostrings dichromat ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Hmisc IRanges RColorBrewer rlang Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; - biscuiteer = derive2 { name="biscuiteer"; version="1.6.0"; sha256="0f4kk4v2c5diq0fbvyvgwjd1kjk9izr6n9wfrlrr7wbx4pz3c3h6"; depends=[Biobase BiocGenerics BiocParallel biscuiteerData bsseq data_table DelayedMatrixStats dmrseq GenomeInfoDb GenomicRanges gtools HDF5Array Homo_sapiens impute Matrix matrixStats Mus_musculus QDNAseq qualV R_utils readr Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; - blacksheepr = derive2 { name="blacksheepr"; version="1.6.0"; sha256="1iiq9hvgwiwnrf4m4mr6xzv76q1278n3j4xdxylybi5q65rdy5mf"; depends=[circlize ComplexHeatmap pasilla RColorBrewer SummarizedExperiment viridis]; }; - blima = derive2 { name="blima"; version="1.26.0"; sha256="0jwpknr27aypk33nhvx9a3p19rzvfd9qp8d3xi3h0m97xv05nsg2"; depends=[beadarray Biobase BiocGenerics Rcpp]; }; - bluster = derive2 { name="bluster"; version="1.2.1"; sha256="128zd5vwlhmrkq0bpp1dxnkrcqfz1mjmdjlla4wqbjv7v6yyn6lg"; depends=[BiocNeighbors BiocParallel cluster igraph Matrix Rcpp S4Vectors]; }; - bnbc = derive2 { name="bnbc"; version="1.14.0"; sha256="1qgb32bhiyiz1v56x9by53s13wanlhp99axay5j91zdvgnmvmdry"; depends=[BiocGenerics data_table EBImage GenomeInfoDb GenomicRanges IRanges matrixStats preprocessCore Rcpp rhdf5 S4Vectors SummarizedExperiment sva]; }; - bnem = derive2 { name="bnem"; version="1.0.0"; sha256="0lvqpbn5p9bvl33hyxcsdvjiysvq06ixx74q4j168k8qzpldaswv"; depends=[affy binom Biobase CellNOptR cluster epiNEM flexclust graph limma matrixStats mnem RColorBrewer Rgraphviz rmarkdown snowfall sva vsn]; }; - brainflowprobes = derive2 { name="brainflowprobes"; version="1.6.0"; sha256="0nsb1nlzz49xlrmhcyj1jkrynz6bix3ajpq2s26g2wrk9gcaa3vw"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 bumphunter cowplot derfinder derfinderPlot GenomicRanges GenomicState ggplot2 RColorBrewer]; }; - branchpointer = derive2 { name="branchpointer"; version="1.18.0"; sha256="1y6id446sjyfa1lpgqzcrnwxxzf0gi52hr33agpwpkpfw5ch4ysb"; depends=[biomaRt Biostrings BSgenome_Hsapiens_UCSC_hg38 caret cowplot data_table gbm GenomeInfoDb GenomicRanges ggplot2 IRanges kernlab plyr rtracklayer S4Vectors stringr]; }; - breakpointR = derive2 { name="breakpointR"; version="1.10.0"; sha256="1mhnmyjk32la1ihlks73pnsas2zwfhgz8dxja6dirnncq7r36md8"; depends=[BiocGenerics breakpointRdata cowplot doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gtools IRanges Rsamtools S4Vectors]; }; - brendaDb = derive2 { name="brendaDb"; version="1.6.0"; sha256="1lnvgq2wqy40x1yn9j29kkfdw7bbjzy7r06nzdxsc88ml9v88jqs"; depends=[BiocFileCache BiocParallel crayon curl dplyr magrittr purrr rappdirs Rcpp rlang stringr tibble tidyr xml2]; }; - bridge = derive2 { name="bridge"; version="1.56.0"; sha256="1d6621kd5x7b9s6l7clbs3vf17aljhxgpj7m8ji0j2swidii7m0x"; depends=[rama]; }; - bsseq = derive2 { name="bsseq"; version="1.28.0"; sha256="1xpv85hr681kkkilsnasndkszwmzbzq11y0lff4na2ilsm7sqmmi"; depends=[beachmat Biobase BiocGenerics BiocParallel Biostrings BSgenome data_table DelayedArray DelayedMatrixStats GenomeInfoDb GenomicRanges gtools HDF5Array IRanges limma locfit permute R_utils Rcpp rhdf5 S4Vectors scales SummarizedExperiment]; }; - bumphunter = derive2 { name="bumphunter"; version="1.34.0"; sha256="0wi38vwfi8qr10x4xifhylxx7vfc6fqvqs649iq7lf0y7islwq2v"; depends=[AnnotationDbi BiocGenerics doRNG foreach GenomeInfoDb GenomicFeatures GenomicRanges IRanges iterators limma locfit matrixStats S4Vectors]; }; - cBioPortalData = derive2 { name="cBioPortalData"; version="2.4.10"; sha256="1yfyfnlnhn8ryzyqbl51lqvsgcf84kqpibn9r24i0hd78y5jbhkm"; depends=[AnVIL BiocFileCache digest dplyr GenomeInfoDb GenomicRanges httr IRanges MultiAssayExperiment RaggedExperiment readr RTCGAToolbox S4Vectors SummarizedExperiment TCGAutils tibble tidyr]; }; - cTRAP = derive2 { name="cTRAP"; version="1.10.1"; sha256="0bj1zqdkbv9dww6y8z82bkzirlaqxcsq1x0vm3pbm0ssp48118w0"; depends=[binr biomaRt cowplot data_table dplyr DT fastmatch fgsea ggplot2 ggrepel highcharter httr limma pbapply R_utils readxl reshape2 rhdf5 scales shiny tibble]; }; - caOmicsV = derive2 { name="caOmicsV"; version="1.22.0"; sha256="1h43ml0alpcyafafn8rbm784gr0xpy00942vghqyf3i3y1zq0522"; depends=[bc3net igraph]; }; - calm = derive2 { name="calm"; version="1.6.0"; sha256="1k25dn8xvnpqhlzzmhjqzcpx3i7mc2avxgd8mwr116jwg4fwk077"; depends=[mgcv]; }; - canceR = derive2 { name="canceR"; version="1.26.0"; sha256="170v9ln5p399vzh6l4xl28yfbi93kj65m0pb4980mrzpb8199xkp"; depends=[Biobase cgdsr circlize Formula geNetClassifier GSEABase phenoTest plyr rpart RUnit survival tcltk2 tkrplot]; }; - cancerclass = derive2 { name="cancerclass"; version="1.36.0"; sha256="0vk2ayqw5hia97k88g4zbjyc38ck0pay8lbn2hwrhr69lmpwz4zc"; depends=[binom Biobase]; }; - casper = derive2 { name="casper"; version="2.26.0"; sha256="1lhhsw26wqhcj4g2r30wgjhizs63i6mssxlvjxv8a7h6170wazxk"; depends=[Biobase BiocGenerics coda EBarrays gaga GenomeInfoDb GenomicFeatures GenomicRanges gtools IRanges limma mgcv Rsamtools rtracklayer S4Vectors sqldf survival VGAM]; }; - categoryCompare = derive2 { name="categoryCompare"; version="1.36.0"; sha256="1r1r4hvg3z6c1vkhhsh0c5j538z4msvndx6mns3cxdv7fm11zg05"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category colorspace GOstats graph GSEABase hwriter RCy3]; }; - cbaf = derive2 { name="cbaf"; version="1.14.0"; sha256="0q2lr9d64wqy5jjcfw9821wzq1dxqvga2mdgwf6i9lsxdxqvw83r"; depends=[BiocFileCache cgdsr genefilter gplots openxlsx RColorBrewer]; }; - cbpManager = derive2 { name="cbpManager"; version="1.0.2"; sha256="05mb4rzw90dfywlzfva1451kz74ziya945d691lzz3agxd7xnlfs"; depends=[basilisk dplyr DT htmltools jsonlite magrittr plyr rapportools reticulate rintrojs shiny shinyBS shinycssloaders shinydashboard vroom]; }; - ccfindR = derive2 { name="ccfindR"; version="1.12.0"; sha256="1xkx013mv17kyvsgvqbjwy30mf4sasghg6kxka1m7z3jk7l6zx2b"; depends=[ape gtools irlba Matrix RColorBrewer Rcpp RcppEigen Rdpack Rmpi Rtsne S4Vectors SingleCellExperiment SummarizedExperiment]; }; - ccmap = derive2 { name="ccmap"; version="1.18.0"; sha256="1v9ynyb35xafycdwngh2k2i3xshap3ibrxm1zssv7v2svl9mvfxa"; depends=[AnnotationDbi BiocManager ccdata data_table doParallel foreach lsa xgboost]; }; - ccrepe = derive2 { name="ccrepe"; version="1.28.0"; sha256="1dwxp0zlz7jzy8fjj6p58j6skaz3bgcbhky5a69q48d2isx6kqc3"; depends=[infotheo]; }; - ceRNAnetsim = derive2 { name="ceRNAnetsim"; version="1.4.0"; sha256="1ywm7lbbwr9d6rar8lmlwsxdmwbnam8p1gjlqcz0xlvm125gm5c0"; depends=[dplyr furrr future ggplot2 ggraph igraph purrr rlang tibble tidygraph tidyr]; }; - celaref = derive2 { name="celaref"; version="1.10.0"; sha256="013dlqscxyzvdp91b90bjiflw2ckcc4nn2h5rnsbqaq9csgppvg5"; depends=[BiocGenerics DelayedArray dplyr ggplot2 magrittr MAST Matrix readr rlang S4Vectors SummarizedExperiment tibble]; }; - celda = derive2 { name="celda"; version="1.8.1"; sha256="085ql88sp1dhgkjvakh11vm790bnfmdcp9qc092hncni7x06s35x"; depends=[circlize ComplexHeatmap data_table dbscan DelayedArray digest doParallel enrichR foreach ggplot2 ggrepel gtable Matrix matrixStats MCMCprecision multipanelfigure plyr RColorBrewer Rcpp RcppEigen reshape2 Rtsne S4Vectors scales scater scran SingleCellExperiment stringr SummarizedExperiment uwot withr]; }; - cellHTS2 = derive2 { name="cellHTS2"; version="2.56.0"; sha256="0lvnnhz3zjxpz4cj38pj89z6agvlhi83ivxp14f99c1m5pvwnh4a"; depends=[Biobase BiocGenerics Category genefilter GSEABase hwriter locfit RColorBrewer splots vsn]; }; - cellTree = derive2 { name="cellTree"; version="1.22.0"; sha256="1yw0aij8p47s65x8qpd6hg2qii4cnga3cm2mzfnjg41ln5m4g0f1"; depends=[gplots igraph maptpx slam topGO topicmodels xtable]; }; - cellbaseR = derive2 { name="cellbaseR"; version="1.16.0"; sha256="0vrl0bdsf5x3anm7y57kaf5vh15flc7f6yb7gp8hcnj6sd44967h"; depends=[BiocParallel data_table doParallel foreach httr jsonlite pbapply R_utils Rsamtools tidyr]; }; - cellity = derive2 { name="cellity"; version="1.20.0"; sha256="1p602bfzmiwfza511g5g7z6x0zscwld99dl1cj6larac3ycjrrw7"; depends=[AnnotationDbi e1071 ggplot2 mvoutlier org_Hs_eg_db org_Mm_eg_db robustbase topGO]; }; - cellmigRation = derive2 { name="cellmigRation"; version="1.0.0"; sha256="1yivxigc9pcsg8r5r4lwg0yabdrvdajpkk8bkwgv2yw33865jmj3"; depends=[doParallel FactoMineR FME foreach Hmisc matrixStats reshape2 sp SpatialTools tiff vioplot]; }; - cellscape = derive2 { name="cellscape"; version="1.16.0"; sha256="1b6ni9846avbs8syipby8smswj7rp6fxqca4lgjxlbsxw2zmnwz3"; depends=[dplyr gtools htmlwidgets jsonlite plyr reshape2 stringr]; }; - censcyt = derive2 { name="censcyt"; version="1.0.0"; sha256="1bp392ac9494gbppwjhllqw92l5ifrrc1wjgbkpk7i3mh11zy071"; depends=[BiocParallel broom_mixed diffcyt dirmult dplyr edgeR fitdistrplus lme4 magrittr MASS mice multcomp purrr rlang S4Vectors stringr SummarizedExperiment survival tibble tidyr]; }; - cghMCR = derive2 { name="cghMCR"; version="1.50.0"; sha256="0l95ar1lz06ijqz6wnnlc0za6qfcsnxq6j0mjypgpg3hkin41q4i"; depends=[BiocGenerics CNTools DNAcopy limma]; }; - chimeraviz = derive2 { name="chimeraviz"; version="1.18.0"; sha256="17xn18c2fjc6r1vjr5awhacpg5awy413fif0das8ks2jbcb93jxw"; depends=[AnnotationDbi AnnotationFilter BiocStyle Biostrings checkmate data_table dplyr DT ensembldb GenomeInfoDb GenomicAlignments GenomicRanges graph gtools Gviz IRanges magick org_Hs_eg_db org_Mm_eg_db plyr RCircos RColorBrewer Rgraphviz rmarkdown Rsamtools S4Vectors]; }; - chipenrich = derive2 { name="chipenrich"; version="2.16.0"; sha256="1qqb3ayckwj9pagvsfcqw5rc3hrhjwsjpc3m5j60gbvnm0hk3fpi"; depends=[AnnotationDbi BiocGenerics chipenrich_data GenomeInfoDb GenomicRanges IRanges lattice latticeExtra MASS mgcv org_Dm_eg_db org_Dr_eg_db org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db plyr rms rtracklayer S4Vectors stringr]; }; - chipseq = derive2 { name="chipseq"; version="1.42.0"; sha256="078p9h0zghlhpd6cr54nww1mk7q97imx8yqfayw5m2yq4097ivbi"; depends=[BiocGenerics GenomicRanges IRanges lattice S4Vectors ShortRead]; }; - chopsticks = derive2 { name="chopsticks"; version="1.58.0"; sha256="10rwb9kg8r50g2qp5rnx16arrx5ia91hyvf988yn3as52ka83q1d"; depends=[survival]; }; - chromDraw = derive2 { name="chromDraw"; version="2.22.0"; sha256="0g8ymy120jssxlgq42zlqllla3c71y9sywdap7vkr9ghfvzl4vv8"; depends=[GenomicRanges Rcpp]; }; - chromPlot = derive2 { name="chromPlot"; version="1.20.0"; sha256="1l4fwv1wyda3xk49izprnv7p8x8z1q7x0zwr5207chwk5s4njcng"; depends=[biomaRt GenomicRanges]; }; - chromVAR = derive2 { name="chromVAR"; version="1.14.0"; sha256="1birmwvcvl2hb5ygbsb3wvbdfayqqs53j1bks46cbkq7ybigfyar"; depends=[BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicRanges ggplot2 IRanges Matrix miniUI nabor plotly RColorBrewer Rcpp RcppArmadillo Rsamtools Rtsne S4Vectors shiny SummarizedExperiment TFBSTools]; }; - chromstaR = derive2 { name="chromstaR"; version="1.18.0"; sha256="09cqzylci4x4i7wn4ckcqhdlljbzfrp08wdvkkc5vrdldnj9pq5h"; depends=[bamsignals BiocGenerics chromstaRData doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges mvtnorm reshape2 Rsamtools S4Vectors]; }; - chromswitch = derive2 { name="chromswitch"; version="1.14.0"; sha256="15xakwdrb65grpg9fr7sa8v7z1n9x5fsjj28crwjyb34m7br2qgj"; depends=[Biobase BiocParallel cluster dplyr GenomicRanges gplots IRanges lazyeval magrittr matrixStats NMF rtracklayer S4Vectors tidyr]; }; - cicero = derive2 { name="cicero"; version="1.10.1"; sha256="1y34cm52bv1v2hr7sz8zjzxwd4wng7v75avz5wx45l0ld54z9l10"; depends=[assertthat Biobase BiocGenerics data_table dplyr FNN GenomicRanges ggplot2 glasso Gviz igraph IRanges Matrix monocle plyr reshape2 S4Vectors stringi stringr tibble tidyr VGAM]; }; - circRNAprofiler = derive2 { name="circRNAprofiler"; version="1.6.0"; sha256="1hif40vfg2lkbyf6abbkxbdm3b1biw6gxnh6ca2sydvi3y5l2ys2"; depends=[AnnotationHub Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 DESeq2 dplyr edgeR GenomeInfoDb GenomicRanges ggplot2 gwascat IRanges magrittr R_utils readr reshape2 rlang rtracklayer S4Vectors seqinr stringi stringr universalmotif]; }; - cisPath = derive2 { name="cisPath"; version="1.32.0"; sha256="1glhyiy1yibn3a3d23p10b91a9cmzzl1g5b31m4djjiil3qsw389"; depends=[]; }; - cleanUpdTSeq = derive2 { name="cleanUpdTSeq"; version="1.30.0"; sha256="0ibm1fj3dni734ibfzmbdhmr9sarpxfydg4mg95vs2w1rqy55ry3"; depends=[Biostrings BSgenome BSgenome_Drerio_UCSC_danRer7 e1071 GenomeInfoDb GenomicRanges IRanges seqinr stringr]; }; - cleaver = derive2 { name="cleaver"; version="1.30.0"; sha256="0cw58dhgcrg7nf0rn93fn015c1kfglr4ybhffj51hyg34wd8k4xl"; depends=[Biostrings IRanges S4Vectors]; }; - clippda = derive2 { name="clippda"; version="1.42.0"; sha256="1k9sjgnxk2qg6idcsx9z1wyd24ja507wm7slq6jrvdbslr6ap48i"; depends=[Biobase lattice limma rgl scatterplot3d statmod]; }; - clipper = derive2 { name="clipper"; version="1.32.0"; sha256="17sfaz2sic0n2qs2d2mj6206y2idhrpm0mqas7bzsi95wj6qhs3x"; depends=[Biobase corpcor graph gRbase igraph KEGGgraph Matrix qpgraph RBGL Rcpp]; }; - cliqueMS = derive2 { name="cliqueMS"; version="1.6.0"; sha256="0ian0lqjp6p4lxmxnqk5l5kw2j3h2lff3widz5cfqr71421fn92q"; depends=[BH igraph matrixStats MSnbase qlcMatrix Rcpp RcppArmadillo xcms]; }; - clonotypeR = derive2 { name="clonotypeR"; version="1.30.0"; sha256="1siisyqsczjgqp0rm7r9n4j2r52h1g4yi8p7j33w7k8kw4ay03jm"; depends=[]; }; - clst = derive2 { name="clst"; version="1.40.0"; sha256="1lqj36567bahb58naygqhpf09lid0whqma6rilvzg68l6px06nz4"; depends=[lattice ROC]; }; - clstutils = derive2 { name="clstutils"; version="1.40.1"; sha256="0z03ciq2gyrziwg4bmsbf9f0kwrl9h64wnvpnx81f5xzjbwlqzsh"; depends=[ape clst lattice rjson RSQLite]; }; - clustComp = derive2 { name="clustComp"; version="1.20.0"; sha256="18kq0s9cv4b5dy28cg104simyykka6gx9bfb1nhgz4z6ljb65ccn"; depends=[sm]; }; - clusterExperiment = derive2 { name="clusterExperiment"; version="2.12.0"; sha256="1fhmayciwn1m124b4dcs3gzbghgk9f7a7qmjnvvxc958cywcwkx5"; depends=[ape BiocGenerics BiocSingular cluster DelayedArray edgeR HDF5Array howmany kernlab limma locfdr Matrix matrixStats mbkmeans NMF phylobase pracma RColorBrewer Rcpp S4Vectors scales SingleCellExperiment stringr SummarizedExperiment zinbwave]; }; - clusterProfiler = derive2 { name="clusterProfiler"; version="4.0.5"; sha256="1dccrl2ffhgmv3iqlmpln7z86ahpf0j9ma194fnknsgi3cd9rhrl"; depends=[AnnotationDbi DOSE downloader dplyr enrichplot GO_db GOSemSim magrittr plyr qvalue rlang tidyr yulab_utils]; }; - clusterSeq = derive2 { name="clusterSeq"; version="1.16.0"; sha256="07l7l2s2iha0n6n76j6x913vlzfxmfg9zmgs0qi8hxzy0y2wz8s3"; depends=[baySeq BiocGenerics BiocParallel]; }; - clusterStab = derive2 { name="clusterStab"; version="1.64.0"; sha256="1cra5fjd6sygybfa04af8p01wzl0y5cfx17bias4kdjk0blvgfzx"; depends=[Biobase]; }; - clustifyr = derive2 { name="clustifyr"; version="1.4.0"; sha256="1bj4ar7gnzmzq4jrkrxvgak8fdzjm2208ld9bf7zw716300qwajz"; depends=[cowplot dplyr entropy fgsea ggplot2 httr Matrix matrixStats proxy readr rlang S4Vectors scales SingleCellExperiment stringr SummarizedExperiment tibble tidyr]; }; - cmapR = derive2 { name="cmapR"; version="1.4.0"; sha256="0l0fqkrp5hjw4ggshnjpc8bd5m8m42xzprc0cbb7fm5l8qqyavqa"; depends=[data_table flowCore matrixStats rhdf5 SummarizedExperiment]; }; - cn_farms = derive2 { name="cn.farms"; version="1.40.0"; sha256="1hhh104jwac373vqjsp6fvq7ssqswlx7p53mjm015gv9j58q5z5d"; depends=[affxparser Biobase DBI DNAcopy ff lattice oligo oligoClasses preprocessCore snow]; }; - cn_mops = derive2 { name="cn.mops"; version="1.38.0"; sha256="178dayy7bjw3gav2g6ngnjncgrp204jgd68pk7x0m4rxagadiz27"; depends=[Biobase BiocGenerics exomeCopy GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; }; - cnvGSA = derive2 { name="cnvGSA"; version="1.36.0"; sha256="119s8lqcpbvzq4ry0pmsrny2wdvx62c81k7v4ag9x36b8x1m9qyg"; depends=[brglm doParallel foreach GenomicRanges splitstackshape]; }; - coGPS = derive2 { name="coGPS"; version="1.36.0"; sha256="00j1p1rxdhpws9gvwvk2jglzfg23y98k1l5cn24slh0wldbsaa1p"; depends=[]; }; - coMET = derive2 { name="coMET"; version="1.24.0"; sha256="1n9c8hpspb3fyvvcmr88a3iz1f4hpq2z80dmyj5xndl2yz1454b1"; depends=[biomaRt colortools corrplot GenomicRanges gridExtra Gviz hash IRanges psych rtracklayer S4Vectors]; }; - coRdon = derive2 { name="coRdon"; version="1.10.0"; sha256="1dsyv4gzd3rm339z3wqxq12cqyy01jfhvyq4r58r84nl4qzss6wl"; depends=[Biobase Biostrings data_table dplyr ggplot2 purrr stringr]; }; - codelink = derive2 { name="codelink"; version="1.60.0"; sha256="14di10nyan870hl0b51aymm455a6z4izncjbh2i7am6k6qgaygna"; depends=[annotate Biobase BiocGenerics limma]; }; - coexnet = derive2 { name="coexnet"; version="1.14.0"; sha256="03a0ja03ribsq4cy89hgzf9vv9afk1bzr9sm0gp8jv7iw9pxicp5"; depends=[acde affy Biobase GEOquery igraph limma minet rmarkdown siggenes STRINGdb SummarizedExperiment vsn]; }; - cogena = derive2 { name="cogena"; version="1.26.0"; sha256="0aq69sk4npfa0ycs3y48r4gbfzd1xmhxddyrndvqwa9l5ib7ns67"; depends=[amap apcluster Biobase biwt class cluster corrplot devtools doParallel dplyr fastcluster foreach ggplot2 gplots kohonen mclust reshape2 stringr tibble tidyr]; }; - cola = derive2 { name="cola"; version="1.8.1"; sha256="12h5vsahh3hgdxjlgfssqqk0kllrhkza3schbgj0if6lmij23wg0"; depends=[BiocGenerics brew circlize clue cluster ComplexHeatmap crayon digest doParallel eulerr foreach GetoptLong GlobalOptions httr impute irlba knitr markdown matrixStats mclust microbenchmark png RColorBrewer Rcpp skmeans xml2]; }; - combi = derive2 { name="combi"; version="1.4.0"; sha256="02zjcgx3km03rjmpkdrj67isp8qk8bl88pfyn3vfbaw9kmlxj003"; depends=[alabama BB Biobase cobs ggplot2 limma Matrix nleqslv phyloseq reshape2 SummarizedExperiment tensor vegan]; }; - compEpiTools = derive2 { name="compEpiTools"; version="1.26.0"; sha256="0y80b0vi5jsakp6ba119gj8lc0v4rkk58ikgx6mh8hvh35002mhd"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges GO_db gplots IRanges methylPipe Rsamtools S4Vectors topGO XVector]; }; - compartmap = derive2 { name="compartmap"; version="1.10.0"; sha256="10v6fiqnpx7y3clna3q50brxzslyw96x9gwp9sg6k22rdi8pyzf6"; depends=[BiocSingular DelayedArray DelayedMatrixStats GenomicRanges ggplot2 HDF5Array Matrix RaggedExperiment reshape2 RMTstat rtracklayer scales SummarizedExperiment]; }; - compcodeR = derive2 { name="compcodeR"; version="1.28.0"; sha256="0hl7lj9k9sxrn327fzvf8mkx3mnr041zn6lxcbahfffix6lrpzc5"; depends=[caTools edgeR ggplot2 gplots gtools KernSmooth knitr lattice limma markdown MASS modeest ROCR sm stringr vioplot]; }; - conclus = derive2 { name="conclus"; version="1.0.0"; sha256="1g7snf1s3kl0g4aikn9ly8igj0fk8qbngzqb5wy665g6jvvacvw5"; depends=[AnnotationDbi Biobase BiocFileCache biomaRt clusterProfiler dbscan doParallel dplyr factoextra foreach fpc GEOquery ggplot2 gridExtra pheatmap Rtsne scales scater scran SingleCellExperiment stringr SummarizedExperiment]; }; - condiments = derive2 { name="condiments"; version="1.0.0"; sha256="0brjjmx1brgx4rwb5wn3aj9209lbz2dpkhz6vrxdbk5v7n2vgbny"; depends=[BiocParallel dplyr Ecume igraph magrittr matrixStats mgcv pbapply RANN SingleCellExperiment slingshot SummarizedExperiment TrajectoryUtils]; }; - consensus = derive2 { name="consensus"; version="1.10.0"; sha256="04brkizq2p7lymd380fdw5x4d6hxh15mplh58pmwz3rh8m3za77z"; depends=[gplots matrixStats RColorBrewer]; }; - consensusDE = derive2 { name="consensusDE"; version="1.10.0"; sha256="0b98zzpskbdcl6lgwmxgs2rr6r6c5y3dxr3wggk8d0g7lmxicg0q"; depends=[airway AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings data_table dendextend DESeq2 EDASeq edgeR EnsDb_Hsapiens_v86 ensembldb GenomicAlignments GenomicFeatures limma org_Hs_eg_db pcaMethods RColorBrewer Rsamtools RUVSeq S4Vectors SummarizedExperiment TxDb_Dmelanogaster_UCSC_dm3_ensGene]; }; - consensusOV = derive2 { name="consensusOV"; version="1.14.0"; sha256="0cjwpcnsp7bajpi481lwp414kksfjd5kairmya20kxi5msf34yxw"; depends=[Biobase gdata genefu GSVA limma matrixStats randomForest]; }; - consensusSeekeR = derive2 { name="consensusSeekeR"; version="1.20.0"; sha256="14rhi0jq67q88ladi3yycgnxskih11097szlb4gv9gp3rhdvddjd"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges IRanges rtracklayer S4Vectors stringr]; }; - contiBAIT = derive2 { name="contiBAIT"; version="1.20.0"; sha256="14i3pk84ipg398bs876jqv1fjyaryz0422bj6174jiz4syz2gypq"; depends=[BH BiocGenerics BiocParallel clue cluster colorspace data_table diagram DNAcopy exomeCopy GenomicAlignments GenomicFiles GenomicRanges ggplot2 gplots gtools IRanges Rcpp reshape2 Rsamtools rtracklayer S4Vectors TSP]; }; - conumee = derive2 { name="conumee"; version="1.26.0"; sha256="0cgf75zsw9wnc735njshanvdhjm5wb2sph80z38fm3q3mikf1w42"; depends=[DNAcopy GenomeInfoDb GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest IRanges minfi rtracklayer]; }; - convert = derive2 { name="convert"; version="1.68.0"; sha256="0r8vd1as3ci4xn8w3lk1j529lms2zxq7c7m5lcycjyzbjnv7xs03"; depends=[Biobase limma marray]; }; - copa = derive2 { name="copa"; version="1.60.0"; sha256="0pm90l8ky3gcpy2wsai0vlxq84nymywn7f63d7grz7j50v3csqqc"; depends=[Biobase]; }; - copynumber = derive2 { name="copynumber"; version="1.32.0"; sha256="03pvjzjrcsbjfw3855s3whfzin45vaipy7cahnj6fywdysvh8hps"; depends=[BiocGenerics GenomicRanges IRanges S4Vectors]; }; - corral = derive2 { name="corral"; version="1.2.0"; sha256="06nkyqz0rp1lbcbak0iyyzzy43qskdljh5v2ld4ggc641pwipl8r"; depends=[ggplot2 ggthemes gridExtra irlba Matrix MultiAssayExperiment pals SingleCellExperiment SummarizedExperiment transport]; }; - coseq = derive2 { name="coseq"; version="1.16.0"; sha256="1ai2y7nrcr61as33bix5pzpfhbxxa0m5lb14kxbgmdjpc2n43mxs"; depends=[BiocParallel capushe compositions corrplot DESeq2 e1071 edgeR ggplot2 HTSCluster HTSFilter mvtnorm Rmixmod S4Vectors scales SummarizedExperiment]; }; - cosmiq = derive2 { name="cosmiq"; version="1.26.0"; sha256="1mj6l1ys69ncykn425iihxixp9yp7r3skhk6fy8jsn3i6zpdsm6d"; depends=[faahKO MassSpecWavelet pracma Rcpp xcms]; }; - cosmosR = derive2 { name="cosmosR"; version="1.0.1"; sha256="0zsp02h11zmava8bnvncdy2xcq5xxp42b0vpqbhrwkma0z4izzlf"; depends=[AnnotationDbi biomaRt CARNIVAL dorothea dplyr igraph org_Hs_eg_db purrr readr rlang stringr tibble visNetwork]; }; - countsimQC = derive2 { name="countsimQC"; version="1.10.0"; sha256="0kjjxw3n3m25fryafzbi807kcq9jin4fqkjxpfgdqniwwk0vhd1m"; depends=[caTools DESeq2 dplyr DT edgeR genefilter GenomeInfoDbData ggplot2 randtests rmarkdown SummarizedExperiment tidyr]; }; - covEB = derive2 { name="covEB"; version="1.18.0"; sha256="0cwik99d5k92pmh16fb2l08l863k61xzzcbxadllkwyar8bla727"; depends=[Biobase gsl igraph LaplacesDemon Matrix mvtnorm]; }; - covRNA = derive2 { name="covRNA"; version="1.18.0"; sha256="1ncncif3vmszi4l3s0y37af7n7py2qy68j9wnksrysz8rfj6lq73"; depends=[ade4 Biobase genefilter]; }; - cpvSNP = derive2 { name="cpvSNP"; version="1.24.0"; sha256="1f4bchxn8xd7mzzdhymwhwc1ay69ak17psrhvgibarphfa68car3"; depends=[BiocParallel corpcor GenomicFeatures ggplot2 GSEABase plyr]; }; - cqn = derive2 { name="cqn"; version="1.38.0"; sha256="1aqyzi6cr681xl7mc1m7a6ni51i5132sisw7gjanbxq2b3czmz25"; depends=[mclust nor1mix preprocessCore quantreg]; }; - crisprseekplus = derive2 { name="crisprseekplus"; version="1.18.0"; sha256="17pvgrkvsyp1klvndz7xzhvd6kwilnf56zv1gx1jk54ildw094yi"; depends=[AnnotationDbi BiocManager BSgenome CRISPRseek DT GenomicFeatures GenomicRanges GUIDEseq hash shiny shinyjs]; }; - crlmm = derive2 { name="crlmm"; version="1.50.0"; sha256="0xd273pjchb0rbykqnn7jwz2bz6qisd7i76gmf8qpzziqdm417p1"; depends=[affyio beanplot Biobase BiocGenerics ellipse ff foreach illuminaio lattice limma matrixStats mvtnorm oligoClasses preprocessCore RcppEigen VGAM]; }; - crossmeta = derive2 { name="crossmeta"; version="1.18.0"; sha256="0p8gmqxsiyc0c9qgwhhvq60m6936ngsx5ijvxy2vwv4chprgmg5c"; depends=[affxparser affy AnnotationDbi Biobase BiocGenerics BiocManager data_table DBI DESeq2 DT edgeR fdrtool GEOquery limma matrixStats metaMA miniUI oligo RColorBrewer RCurl reader readxl RSQLite shiny shinyBS shinyjs shinypanel shinyWidgets statmod stringr SummarizedExperiment sva tibble XML]; }; - csaw = derive2 { name="csaw"; version="1.26.0"; sha256="0br85155fcj2m9hbf7g94j27qp3ldgmf89ahb8mygcvwqj44f127"; depends=[BiocGenerics BiocParallel edgeR GenomeInfoDb GenomicRanges IRanges limma Matrix metapod Rcpp Rhtslib Rsamtools S4Vectors SummarizedExperiment zlibbioc]; }; - ctc = derive2 { name="ctc"; version="1.66.0"; sha256="1v8aysvy6a3r1iafc3xvk885c128kb3pb9zpcdhdjcn0by96k8hh"; depends=[amap]; }; - ctgGEM = derive2 { name="ctgGEM"; version="1.4.0"; sha256="04s73n42ch4i2rccq1affglwv4lkajy455pbavrycl27sabi0lz7"; depends=[Biobase BiocGenerics HSMMSingleCell igraph monocle sincell SummarizedExperiment TSCAN]; }; - ctsGE = derive2 { name="ctsGE"; version="1.18.0"; sha256="043qva9njsivp6r2cplaic0idgjf3jxz2js2yxqnj8xr1n8jlhbl"; depends=[ccaPP ggplot2 limma reshape2 shiny stringr]; }; - cummeRbund = derive2 { name="cummeRbund"; version="2.34.0"; sha256="1avvmvrmldbscc7xd6a6k22xjykbzafvqf87wh5z9rx3qlzswsjx"; depends=[Biobase BiocGenerics fastcluster ggplot2 Gviz plyr reshape2 RSQLite rtracklayer S4Vectors]; }; - customCMPdb = derive2 { name="customCMPdb"; version="1.2.0"; sha256="0ihmkqz1v6gfbv2v0igwvgi4gygbx997vrh84sx487vap0d62wr7"; depends=[AnnotationHub BiocFileCache ChemmineR rappdirs RSQLite XML]; }; - customProDB = derive2 { name="customProDB"; version="1.32.0"; sha256="0qr3i826vyrhs1kqbavv6hsjj2bgnyv63nn9xdiqsakh2xbgzrph"; depends=[AhoCorasickTrie AnnotationDbi biomaRt Biostrings DBI GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges plyr RCurl Rsamtools RSQLite rtracklayer S4Vectors stringr VariantAnnotation]; }; - cyanoFilter = derive2 { name="cyanoFilter"; version="1.0.0"; sha256="05wfksk5vkfd46fh0nrlsfn9c53728jy6h037z45fvnl8jy7f9kf"; depends=[Biobase flowCore flowDensity GGally ggplot2]; }; - cycle = derive2 { name="cycle"; version="1.46.0"; sha256="00p21wzhk6pc3avgd2z2r7kabsg7i1m08nbnh2f3djz8sdnqychr"; depends=[Biobase Mfuzz]; }; - cydar = derive2 { name="cydar"; version="1.16.0"; sha256="0ih9mxbpyvfqgk06qb61i1v0sv0j8zfkbikp7630p3ib4g9i53xm"; depends=[Biobase BiocGenerics BiocNeighbors BiocParallel flowCore Rcpp S4Vectors shiny SingleCellExperiment SummarizedExperiment viridis]; }; - cytolib = derive2 { name="cytolib"; version="2.4.0"; sha256="0wl7zqwv0i38dfzqfsz40n3mcbxi38ffn1rbd5pm9s7hq16zr4nv"; depends=[BH Rcpp RcppArmadillo RcppParallel Rhdf5lib RProtoBufLib]; }; - cytomapper = derive2 { name="cytomapper"; version="1.4.1"; sha256="0gl4slw5x54gz27y5rcrlddhym4lw6jbpi1pvdi5f261nl2symjk"; depends=[BiocParallel DelayedArray EBImage ggbeeswarm ggplot2 HDF5Array matrixStats raster RColorBrewer rhdf5 S4Vectors shiny shinydashboard SingleCellExperiment SummarizedExperiment svglite svgPanZoom viridis]; }; - daMA = derive2 { name="daMA"; version="1.64.0"; sha256="1aqgxzr323hkvh6d3b130xqhkzmz7awmwwdq85hgmyvywwyjk1qz"; depends=[MASS]; }; - dada2 = derive2 { name="dada2"; version="1.20.0"; sha256="1wb9knxyiv21q8iia72k173qilw55s7i4sc8l1r3s9rg5k7jy945"; depends=[BiocGenerics Biostrings ggplot2 IRanges Rcpp RcppParallel reshape2 ShortRead XVector]; }; - dagLogo = derive2 { name="dagLogo"; version="1.30.0"; sha256="10bcs0bd1ba418a0jnfnxsfjm0678rq475c75ih24xb1ws54yv1a"; depends=[BiocGenerics biomaRt Biostrings motifStack pheatmap UniProt_ws]; }; - dasper = derive2 { name="dasper"; version="1.2.0"; sha256="1zs0v6yqrg2cd5qvpbcwa7g7zc31skj8gwgjxyzg3kj4nvmfpfmw"; depends=[basilisk BiocFileCache BiocParallel data_table dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges magrittr megadepth plyranges readr reticulate S4Vectors stringr SummarizedExperiment tidyr]; }; - dcGSA = derive2 { name="dcGSA"; version="1.20.0"; sha256="183r6sjl4y0x1wyh3fbaxvxl447vjig06m7k0wq6shqhfgca96ag"; depends=[BiocParallel Matrix]; }; - dcanr = derive2 { name="dcanr"; version="1.8.0"; sha256="1bmqcap8kiiprgcpszfn2fsqnkq5142pydg5vdm139qmhjci74cn"; depends=[circlize doRNG foreach igraph Matrix plyr RColorBrewer reshape2 stringr]; }; - dce = derive2 { name="dce"; version="1.0.0"; sha256="1wzx7wsk1wq142br7jl2pd49mqg542dgh3zfsqilal2zpdmdi9iv"; depends=[assertthat CombinePValue dplyr edgeR epiNEM expm ggplot2 ggraph glm2 glue graph graphite harmonicmeanp igraph logger MASS Matrix metap mnem naturalsort org_Hs_eg_db pcalg ppcor purrr reshape2 Rgraphviz rlang tidygraph tidyverse]; }; - ddCt = derive2 { name="ddCt"; version="1.48.0"; sha256="1d18bw80s9lhcvvprll1wihybr9z3m3brza2nw4gjlaihpf7ldab"; depends=[Biobase BiocGenerics lattice RColorBrewer xtable]; }; - ddPCRclust = derive2 { name="ddPCRclust"; version="1.12.0"; sha256="093xrvrrxsh34w4w4ji9kcgxrz9wkjriy6y7azhyq5d5z9r7yab7"; depends=[clue flowCore flowDensity flowPeaks ggplot2 openxlsx plotrix R_utils SamSPECTRAL]; }; - dearseq = derive2 { name="dearseq"; version="1.4.0"; sha256="1cg6lk9nll9h549d1s5126z4rc4zdawzfzqi2b18js8lml4ihzsj"; depends=[CompQuadForm ggplot2 KernSmooth matrixStats pbapply statmod]; }; - debCAM = derive2 { name="debCAM"; version="1.10.0"; sha256="14n2pn0r7j7vn0rns7y56kzzvw4db9b15543diqli8xy2xdm7wnz"; depends=[apcluster Biobase BiocParallel corpcor DMwR2 geometry NMF nnls pcaPP rJava SummarizedExperiment]; }; - debrowser = derive2 { name="debrowser"; version="1.20.1"; sha256="0w96bix0iv38r9qrznlg47rvrd7cd36di9j08vmp0dn50zcsxm6d"; depends=[annotate AnnotationDbi apeglm ashr clusterProfiler colourpicker DESeq2 DOSE DT edgeR enrichplot GenomicRanges ggplot2 gplots Harman heatmaply igraph IRanges jsonlite limma org_Hs_eg_db org_Mm_eg_db pathview plotly RColorBrewer RCurl reshape2 S4Vectors shiny shinyBS shinydashboard shinyjs stringi SummarizedExperiment sva]; }; - deco = derive2 { name="deco"; version="1.8.0"; sha256="1bsmx5jblfgd12w6kvf7bb1zixyh3sb0zkjw54ar39yjfk86nyw8"; depends=[ade4 AnnotationDbi Biobase BiocParallel BiocStyle cluster foreign gdata ggplot2 gplots gridExtra limma locfit made4 RColorBrewer reshape2 scatterplot3d sfsmisc SummarizedExperiment]; }; - decompTumor2Sig = derive2 { name="decompTumor2Sig"; version="2.8.0"; sha256="1bq42fipc6ahldcdba9yfk7m851y2jrf62k43jhwrffacrl9h2s9"; depends=[BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg19 data_table GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggseqlogo gridExtra Matrix plyr quadprog readxl S4Vectors SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; - decontam = derive2 { name="decontam"; version="1.12.0"; sha256="1ynncsv2rny05696h5qpnb03wpfx0lhcs5b6fj7kijqfpfghbfza"; depends=[ggplot2 reshape2]; }; - decoupleR = derive2 { name="decoupleR"; version="1.0.0"; sha256="1i3y0l2sjmp60bd40qx57qf52w1dw0151m3kqmrmgv5pbbdc6ik5"; depends=[broom dplyr GSVA magrittr Matrix purrr rlang speedglm stringr tibble tidyr tidyselect viper withr]; }; - deepSNV = derive2 { name="deepSNV"; version="1.38.0"; sha256="0zz56hf417m7bgg2g2wpbaik30pi6h2nam1n5bviqgdn4mv8n0bs"; depends=[Biostrings GenomicRanges IRanges Rhtslib SummarizedExperiment VariantAnnotation VGAM]; }; - deltaCaptureC = derive2 { name="deltaCaptureC"; version="1.6.0"; sha256="1kpya8zzvivpmv1q3wqi8apr1hm6niwc5ibkggsbb5r5887s5fp2"; depends=[DESeq2 GenomicRanges ggplot2 IRanges SummarizedExperiment]; }; - deltaGseg = derive2 { name="deltaGseg"; version="1.32.0"; sha256="12lam0xfshqp214xls7j29qyqizirdmd3lnanpr6cgij0k6dc5yn"; depends=[changepoint fBasics ggplot2 pvclust reshape scales tseries wavethresh]; }; - densvis = derive2 { name="densvis"; version="1.2.0"; sha256="0lnrb4j22nyyk1hv0imj1pci5kg2xrqql323n0p11b5i5n5054nq"; depends=[assertthat basilisk Rcpp reticulate]; }; - derfinder = derive2 { name="derfinder"; version="1.26.0"; sha256="1bqzm3zcq4nhngxdfdp7sahylx77g5xwdiqbidxycs2y1p75842v"; depends=[AnnotationDbi BiocGenerics BiocParallel bumphunter derfinderHelper GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges Hmisc IRanges qvalue Rsamtools rtracklayer S4Vectors]; }; - derfinderHelper = derive2 { name="derfinderHelper"; version="1.26.0"; sha256="1w5dxsfx3lspl7qiijf6xbm9y2zzrcb8kfvhkwykcf6b98avrz5b"; depends=[IRanges Matrix S4Vectors]; }; - derfinderPlot = derive2 { name="derfinderPlot"; version="1.26.0"; sha256="04agszbqbr39898q3dbdx4shgbb162h92ipzv17k7gs880cpxm2l"; depends=[derfinder GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 IRanges limma plyr RColorBrewer reshape2 S4Vectors scales]; }; - diffGeneAnalysis = derive2 { name="diffGeneAnalysis"; version="1.74.0"; sha256="1vll26w3vj8f4nhshx7z1pdpf3xsbakspdgfczm6ngc80gi6nc10"; depends=[minpack_lm]; }; - diffHic = derive2 { name="diffHic"; version="1.24.1"; sha256="08df9rvk5rzfjwmzqsa57p3jbyg8gpp5fg5rv0lzdln22sp7jk6c"; depends=[BiocGenerics Biostrings BSgenome csaw edgeR GenomeInfoDb GenomicRanges InteractionSet IRanges limma locfit Rcpp rhdf5 Rhtslib Rsamtools rtracklayer S4Vectors SummarizedExperiment zlibbioc]; }; - diffUTR = derive2 { name="diffUTR"; version="1.0.0"; sha256="134h5p216biqvgkcmr5mk0r70b1nn798cmd0v40clx9bxicjfjpn"; depends=[ComplexHeatmap DEXSeq dplyr edgeR ensembldb GenomeInfoDb GenomicRanges ggplot2 ggrepel IRanges limma matrixStats Rsubread rtracklayer S4Vectors stringi SummarizedExperiment viridisLite]; }; - diffcoexp = derive2 { name="diffcoexp"; version="1.12.0"; sha256="06b8nx6asrfikhmndkan5pvag0p7a948dl7v52rmiihzb2v54wn8"; depends=[BiocGenerics DiffCorr igraph psych SummarizedExperiment WGCNA]; }; - diffcyt = derive2 { name="diffcyt"; version="1.12.0"; sha256="08k1i2pp8naxr3znay4x2zilc3x6xdda1155wxjyjwv58qgh23z3"; depends=[circlize ComplexHeatmap dplyr edgeR flowCore FlowSOM limma lme4 magrittr multcomp reshape2 S4Vectors SummarizedExperiment tidyr]; }; - diffloop = derive2 { name="diffloop"; version="1.20.0"; sha256="0kaagnlw5z5dc70f83hrp8d3hb6dzzsgbkb6q5b3ks9halm60cd3"; depends=[Biobase biomaRt data_table dplyr edgeR foreach GenomeInfoDb GenomicRanges ggplot2 IRanges limma locfit matrixStats pbapply plyr readr reshape2 rtracklayer S4Vectors statmod Sushi]; }; - diffuStats = derive2 { name="diffuStats"; version="1.12.0"; sha256="00lp6ck0znhdj2vy0qxl6vvjzyz3nn0v3qsn59jgcffk2l31dksy"; depends=[checkmate expm igraph MASS Matrix plyr precrec Rcpp RcppArmadillo RcppParallel]; }; - diggit = derive2 { name="diggit"; version="1.24.0"; sha256="03vj91njfkr5nhiqwm7v3j1aq6ba2cbi9mg7acmpawafd8ngjfk9"; depends=[Biobase ks viper]; }; - dir_expiry = derive2 { name="dir.expiry"; version="1.0.0"; sha256="05mk7iwzay1xrgvssbz7nyl5d1n03syalbk18lmjmbx05dy0cjik"; depends=[filelock]; }; - discordant = derive2 { name="discordant"; version="1.16.0"; sha256="17an31wai4nk5jxip9h8k4jv20wpd97c1jzcy8bcyfkz4w5yywwv"; depends=[Biobase biwt gtools MASS]; }; - distinct = derive2 { name="distinct"; version="1.4.1"; sha256="0yi3l990fk21ilrfkipdgzqvr9kl3a67xsad10f929gw0zpplxy7"; depends=[doParallel doRNG foreach ggplot2 limma Matrix Rcpp RcppArmadillo scater SingleCellExperiment SummarizedExperiment]; }; - dittoSeq = derive2 { name="dittoSeq"; version="1.4.4"; sha256="05i1amfpy3vzvhxv3dn66rhcw09c8ip499pnj7swglvyxfmlfw8p"; depends=[colorspace cowplot ggplot2 ggrepel ggridges gridExtra pheatmap reshape2 S4Vectors SingleCellExperiment SummarizedExperiment]; }; - divergence = derive2 { name="divergence"; version="1.8.0"; sha256="1lg7bz9pqsnn8h69fh30xmsynp47dg407kifdfq0kq6rxj38gwrf"; depends=[SummarizedExperiment]; }; - dks = derive2 { name="dks"; version="1.38.0"; sha256="134jqcd9b0yg8in77g8wjvb8wqm5w4vfqh93hp05w95pjxks7d57"; depends=[cubature]; }; - dmrseq = derive2 { name="dmrseq"; version="1.12.0"; sha256="1jbbjifjsnk9261wqmdwkbzj1w52g6vaanpk4w816ri0fap587m4"; depends=[AnnotationHub annotatr BiocParallel bsseq bumphunter DelayedMatrixStats GenomeInfoDb GenomicRanges ggplot2 IRanges locfit matrixStats nlme outliers RColorBrewer rtracklayer S4Vectors]; }; - doppelgangR = derive2 { name="doppelgangR"; version="1.20.0"; sha256="1yrxrdz4nplpx7ljz6662mc6s0vspmy5n91rb71q4iy9qpbkw5i0"; depends=[Biobase BiocParallel digest impute mnormt SummarizedExperiment sva]; }; - doseR = derive2 { name="doseR"; version="1.8.0"; sha256="0hw0p070scagl3fimfh0wq1k4hlbmw429yh2sgi5dyq2c0ml19i9"; depends=[digest edgeR lme4 matrixStats mclust RUnit S4Vectors SummarizedExperiment]; }; - dpeak = derive2 { name="dpeak"; version="1.4.0"; sha256="07hmlbwkbaj12ba0kmi0dnnzsbj7l36biajrbml483rsxsxiqkfi"; depends=[BSgenome IRanges MASS Rcpp]; }; - drawProteins = derive2 { name="drawProteins"; version="1.12.0"; sha256="00acjvxxf2vhab7km2pqjzlkw23yby92a0xrhl2hr2qr6miy3y2g"; depends=[dplyr ggplot2 httr readr tidyr]; }; - drugTargetInteractions = derive2 { name="drugTargetInteractions"; version="1.0.2"; sha256="19c6shb0js0dzxfqraycxj9pqdxlyh7qy4hw3yklz9rln6dr1k0c"; depends=[AnnotationFilter BiocFileCache biomaRt dplyr ensembldb rappdirs RSQLite S4Vectors UniProt_ws]; }; - dualKS = derive2 { name="dualKS"; version="1.52.0"; sha256="13wdb5qmbm6zbf1930x30qvkqb73v28ww3z0nq4n93ghyyl0hidb"; depends=[affy Biobase]; }; - dupRadar = derive2 { name="dupRadar"; version="1.22.0"; sha256="1gxxjmr97r2qn356r55yqzp0kzgy7k67ikb2m9fvzfsbf5mcwkna"; depends=[Rsubread]; }; - dyebias = derive2 { name="dyebias"; version="1.52.0"; sha256="0a6wwl3018lsridj5nc9s7zc31dv7mja88rgsv5fd35ipwl27avm"; depends=[Biobase marray]; }; - easyRNASeq = derive2 { name="easyRNASeq"; version="2.28.0"; sha256="1aqka9kawyhl6hl7c01dfsrwpmpqmkx3gh06ciqh11f0nq9xascb"; depends=[Biobase BiocFileCache BiocGenerics BiocParallel biomaRt Biostrings edgeR GenomeInfoDb genomeIntervals GenomicAlignments GenomicRanges IRanges locfit LSD rappdirs Rsamtools S4Vectors ShortRead SummarizedExperiment]; }; - easyreporting = derive2 { name="easyreporting"; version="1.4.0"; sha256="037ih62gx8drg5y97fkk451wwjyjkpiff5r705nrdjfzisrp63rd"; depends=[rlang rmarkdown shiny]; }; - ecolitk = derive2 { name="ecolitk"; version="1.64.0"; sha256="189yc8kkz5916z28q2wxxjsfl8qpw2j8wla686kr764ah2mhdsi8"; depends=[Biobase]; }; - edge = derive2 { name="edge"; version="2.24.0"; sha256="1n1nk7fba7612bk3581ja8grrgllnd81lg3lh1p7nw92n1gzsqsg"; depends=[Biobase jackstraw MASS qvalue snm sva]; }; - edgeR = derive2 { name="edgeR"; version="3.34.1"; sha256="0f6apsjq6cn794840ls9y2n0hix1gyhvkdgxch1v22qr4sq0c86k"; depends=[limma locfit Rcpp]; }; - eegc = derive2 { name="eegc"; version="1.18.0"; sha256="0c9farjrzprqv120ivx3lax70zaimzid70my5d7020da01lg1y02"; depends=[AnnotationDbi clusterProfiler DESeq2 DOSE edgeR ggplot2 gplots igraph limma org_Hs_eg_db org_Mm_eg_db pheatmap R_utils S4Vectors sna wordcloud]; }; - eiR = derive2 { name="eiR"; version="1.32.0"; sha256="1gz78xw3cwbb03s02gr5lzghnvx19afxw3ylk0ijm4qhfqbw7m0c"; depends=[BiocGenerics ChemmineR DBI digest RcppAnnoy RCurl RUnit snow snowfall]; }; - eisaR = derive2 { name="eisaR"; version="1.4.0"; sha256="198x3h2r4hicad2dz892z8rknn3jwk4qskl3m7a6pqf5swqhsg5c"; depends=[BiocGenerics edgeR GenomicRanges IRanges limma S4Vectors SummarizedExperiment]; }; - enrichTF = derive2 { name="enrichTF"; version="1.8.0"; sha256="0kbrhd98pdx0xd6zninipmly2i4zax5vwldw0mmxp6ipbgwcv54y"; depends=[BiocGenerics BSgenome clusterProfiler GenomeInfoDb GenomicRanges ggplot2 ggpubr heatmap3 IRanges JASPAR2018 magrittr motifmatchr pipeFrame R_utils rmarkdown rtracklayer S4Vectors TFBSTools]; }; - enrichplot = derive2 { name="enrichplot"; version="1.12.3"; sha256="0a4v7ymy9jn66iw093jngzszkvr2mfzzlxp0h6nnvlbnbvqqzgm3"; depends=[cowplot DOSE ggplot2 ggraph ggtree GOSemSim igraph magrittr plyr purrr RColorBrewer reshape2 scatterpie shadowtext]; }; - ensemblVEP = derive2 { name="ensemblVEP"; version="1.34.0"; sha256="0zg5g7hvi965mbxxqkxli1pbk88yz9a3bfgmdjawh5blfznmyqw5"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges S4Vectors SummarizedExperiment VariantAnnotation]; }; - ensembldb = derive2 { name="ensembldb"; version="2.16.4"; sha256="15yllkxr6sj5pfvkvv285nk3q5374nzq1iz8ywmnrq910k3xagd8"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges ProtGenerics Rsamtools RSQLite rtracklayer S4Vectors]; }; - epiNEM = derive2 { name="epiNEM"; version="1.16.0"; sha256="0dw998b5mgf20wzwgvq4xv6sw47jv96wa266ldg6z9m8s4cl0mr2"; depends=[BoolNet e1071 graph gtools igraph latex2exp lattice latticeExtra minet mnem pcalg RColorBrewer]; }; - epialleleR = derive2 { name="epialleleR"; version="1.0.0"; sha256="114ymmcxhpj4nqrgk3962mc6skb580hpchqsci6kq81h2lq0yl6v"; depends=[BH BiocGenerics data_table GenomeInfoDb GenomicRanges Rcpp Rsamtools stringi SummarizedExperiment VariantAnnotation]; }; - epidecodeR = derive2 { name="epidecodeR"; version="1.0.2"; sha256="08h6pdnyamxn6m1ps7abl2wkjj1m58gjm0718zpj6452yrrjaa6g"; depends=[dplyr EnvStats GenomicRanges ggplot2 ggpubr IRanges rstatix rtracklayer]; }; - epigenomix = derive2 { name="epigenomix"; version="1.32.0"; sha256="08hdlrz9i6xkb076nvv8gz0i6hjfklrlyln9d7fzhnfi5vpmyyn8"; depends=[beadarray Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges MCMCpack Rsamtools S4Vectors SummarizedExperiment]; }; - epigraHMM = derive2 { name="epigraHMM"; version="1.0.8"; sha256="1s2k123hczf32v22vq8qhm84mmryvsmbabgpylm1azgwz6fybc1h"; depends=[bamsignals csaw data_table GenomeInfoDb GenomicRanges ggplot2 ggpubr GreyListChIP IRanges limma magrittr MASS Matrix pheatmap Rcpp RcppArmadillo rhdf5 Rhdf5lib Rsamtools rtracklayer S4Vectors scales SummarizedExperiment]; }; - epihet = derive2 { name="epihet"; version="1.8.0"; sha256="02xnmxwhm0l2m8mxnfgv1d8mlmyy1pjlspglq88pnbyr0kr0zcyy"; depends=[data_table doParallel EntropyExplorer foreach GenomicRanges ggplot2 igraph IRanges pheatmap qvalue ReactomePA Rtsne S4Vectors WGCNA]; }; - epivizr = derive2 { name="epivizr"; version="2.22.0"; sha256="08qk680pn89whc5vbnrq6ras51sygccnqnlixvyijxid0gbzfp8h"; depends=[bumphunter epivizrData epivizrServer GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - epivizrChart = derive2 { name="epivizrChart"; version="1.14.0"; sha256="19gighqj05cbn7jj9mfqxi578al4ig2562gcsfh1l7cskvkvv85s"; depends=[BiocGenerics epivizrData epivizrServer htmltools rjson]; }; - epivizrData = derive2 { name="epivizrData"; version="1.20.0"; sha256="17f8yy7m3d8abvzhrb5v9zmw2ka77a4da63f1ma8zia3dfy9cdzz"; depends=[Biobase ensembldb epivizrServer GenomeInfoDb GenomicFeatures GenomicRanges IRanges OrganismDbi S4Vectors SummarizedExperiment]; }; - epivizrServer = derive2 { name="epivizrServer"; version="1.20.0"; sha256="19ymagvlglg4pv4y67sgs0j4dq6gqr0f6ha7g3dawnm7mvk6fv18"; depends=[httpuv mime R6 rjson]; }; - epivizrStandalone = derive2 { name="epivizrStandalone"; version="1.20.0"; sha256="1sfnc2h801lzqxkr4i4ssn0lqjs7w9yl8zcqg3mz1swymnbzy13z"; depends=[BiocGenerics epivizr epivizrServer GenomeInfoDb GenomicFeatures git2r S4Vectors]; }; - erccdashboard = derive2 { name="erccdashboard"; version="1.26.0"; sha256="1pz757q41j6fgcb4asja9j6s9a2bfnfs456nssacw5d68fbj5fk1"; depends=[edgeR ggplot2 gplots gridExtra gtools limma locfit MASS plyr qvalue reshape2 ROCR scales stringr]; }; - erma = derive2 { name="erma"; version="1.8.0"; sha256="02a9702sasgighwb0f9ii8n30ngfx1hjnppaay1f5zsigr8vqalz"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel GenomeInfoDb GenomicFiles GenomicRanges ggplot2 Homo_sapiens IRanges rtracklayer S4Vectors shiny SummarizedExperiment]; }; - esATAC = derive2 { name="esATAC"; version="1.14.0"; sha256="0cwx61068r2bfbmn79j5fawyjanj58xp6pzdz5hqjvwfbn7g4dvs"; depends=[AnnotationDbi BiocGenerics BiocManager Biostrings BSgenome ChIPseeker clusterProfiler corrplot digest GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 igraph IRanges JASPAR2018 knitr magrittr motifmatchr pipeFrame R_utils Rbowtie2 Rcpp rJava rmarkdown Rsamtools rtracklayer S4Vectors ShortRead TFBSTools VennDiagram]; }; - escape = derive2 { name="escape"; version="1.2.0"; sha256="0rj6943c0ff2lp1g0fq1xawzsd3kbhyd1wp8minrcaw92biy5wik"; depends=[BiocParallel dplyr ggplot2 ggridges GSEABase GSVA limma Matrix msigdbr SingleCellExperiment]; }; - esetVis = derive2 { name="esetVis"; version="1.18.0"; sha256="18bjx8gxjsn3snha0s55w2pgaiv78hllris070cai3qjj579iczr"; depends=[Biobase hexbin MASS MLP mpm Rtsne]; }; - eudysbiome = derive2 { name="eudysbiome"; version="1.22.0"; sha256="0kv614zvpp00fp0g0myrcamw2cx90h3hmq418jcapzybadi3i0ag"; depends=[Biostrings plyr R_utils Rsamtools]; }; - evaluomeR = derive2 { name="evaluomeR"; version="1.8.0"; sha256="10cnj9igaws0cw9739z7ngmphln8fw8ziafczdwl70fd0hr97k3l"; depends=[class cluster corrplot flexmix fpc ggdendro ggplot2 kableExtra MASS matrixStats mclust MultiAssayExperiment plotrix prabclus randomForest Rdpack reshape2 SummarizedExperiment]; }; - exomeCopy = derive2 { name="exomeCopy"; version="1.38.0"; sha256="16bnydbfrrp7xqcg0krdzbcf7pw5y1r9lc7hl611lvvms2fva29q"; depends=[GenomeInfoDb GenomicRanges IRanges Rsamtools]; }; - exomePeak2 = derive2 { name="exomePeak2"; version="1.4.2"; sha256="08zr4q7zcfwy18dryar5di4qdjmnsiypll660i20wiq4z2l03646"; depends=[apeglm Biobase BiocGenerics BiocParallel Biostrings BSgenome cqn DESeq2 genefilter GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges mclust reshape2 Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; - fCCAC = derive2 { name="fCCAC"; version="1.18.0"; sha256="12ijks6hz63ys4z98ky1bqwjraz9f98cqllw2w6w3q8jjg6i9c2n"; depends=[ComplexHeatmap fda genomation GenomicRanges ggplot2 IRanges RColorBrewer S4Vectors]; }; - fCI = derive2 { name="fCI"; version="1.22.0"; sha256="0hp6r8ihwrwgp26sbx8awvrwilsqipjsgi6331gjzl6nypd3zcjx"; depends=[FNN gtools psych rgl VennDiagram zoo]; }; - fabia = derive2 { name="fabia"; version="2.38.0"; sha256="1v68835z39hsd34vaa07n2kwhrps6mdppxhhbz637lab2pr4h13r"; depends=[Biobase]; }; - factDesign = derive2 { name="factDesign"; version="1.68.0"; sha256="0qavr5kmg8jlr6gqr31hf371zyzs3fpxvbz5bmla2mwx1c66ih2r"; depends=[Biobase]; }; - famat = derive2 { name="famat"; version="1.2.1"; sha256="15mvmabimr6ch5m8z2xr4hgxwxmzlha4vmm81635nl764wcya13l"; depends=[clusterProfiler dplyr DT GO_db gprofiler2 KEGGREST magrittr MPINet ontologyIndex org_Hs_eg_db plotly reactome_db rWikiPathways shiny shinyBS shinydashboard stringr tidyr]; }; - farms = derive2 { name="farms"; version="1.44.0"; sha256="1zrkdg64kljyi8kvdicimlzmanjyn365lfncyndv4zlqj1majpf9"; depends=[affy Biobase MASS]; }; - fastLiquidAssociation = derive2 { name="fastLiquidAssociation"; version="1.28.0"; sha256="0hznf9408ppqqp5ykwjn36dcvn2wjd4101fqab49zba7hwycf6vs"; depends=[doParallel Hmisc impute LiquidAssociation preprocessCore WGCNA]; }; - fastseg = derive2 { name="fastseg"; version="1.38.0"; sha256="006v7qs707xmnr35b7rw135pyvacrmhv55a3c53birkpsrjgkps0"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors]; }; - fcScan = derive2 { name="fcScan"; version="1.6.0"; sha256="10fcz741dr3wbb9f63qywlrays4cnvfnsm6yw4bmkrwk6ccijg8h"; depends=[GenomicRanges IRanges plyr rtracklayer SummarizedExperiment VariantAnnotation]; }; - fcoex = derive2 { name="fcoex"; version="1.6.0"; sha256="1l1bayciavk65my8h1lfhhlrjivr0ja6xsxzm6hfg16dsgjm1hz8"; depends=[clusterProfiler data_table dplyr FCBF ggplot2 ggrepel igraph intergraph Matrix network pathwayPCA progress scales SingleCellExperiment sna stringr]; }; - fdrame = derive2 { name="fdrame"; version="1.64.0"; sha256="1w72bzswb275hr0pyha230301grqifvkacfbffikhadhsivi3yg6"; depends=[]; }; - fedup = derive2 { name="fedup"; version="1.0.0"; sha256="0dzmxj8ch2r4njpd3hd20i0ai4095dj1bl99z2gn7yjz58zh3n70"; depends=[data_table dplyr forcats ggplot2 ggthemes openxlsx RColorBrewer RCy3 tibble]; }; - ffpe = derive2 { name="ffpe"; version="1.36.0"; sha256="0zsq6cxy7bwki8n3sk42jl3h2sh1cq2yzhlcvnhdnn3jx7zylfx4"; depends=[affy Biobase BiocGenerics lumi methylumi sfsmisc TTR]; }; - fgga = derive2 { name="fgga"; version="1.0.0"; sha256="13cm7mqcy65yy54bp1rq0cp38nd1cczkpfxr0iiw0qizp0iwpxnj"; depends=[BiocFileCache curl e1071 graph gRbase jsonlite RBGL]; }; - fgsea = derive2 { name="fgsea"; version="1.18.0"; sha256="1mhdgy46nxgv7v54bk9bqfy0vgjzl1law7zy718swdd762xn6g9d"; depends=[BH BiocParallel data_table fastmatch ggplot2 gridExtra Matrix Rcpp]; }; - fishpond = derive2 { name="fishpond"; version="1.8.0"; sha256="1x1pkdv2brnlkxdl7q01xy01pxc9ay9rsacsagw421q2mqbcv0sx"; depends=[abind gtools Matrix matrixStats qvalue Rcpp S4Vectors SummarizedExperiment svMisc]; }; - flagme = derive2 { name="flagme"; version="1.48.0"; sha256="1p647d2hr09ib16gm73x9g2wirlw7xxmb0fr92yb3gagn0rk32vw"; depends=[CAMERA gcspikelite gplots MASS SparseM xcms]; }; - flowAI = derive2 { name="flowAI"; version="1.22.0"; sha256="0js02yx54pqinsks25p9fcd917952s51l6d32539in2q1dwdfh49"; depends=[changepoint flowCore ggplot2 knitr plyr RColorBrewer reshape2 rmarkdown scales]; }; - flowBeads = derive2 { name="flowBeads"; version="1.30.0"; sha256="1qdzlpnyvq0vdpa7jj781xii75h9minzllr196kgkkbrvfa668sx"; depends=[Biobase flowCore knitr rrcov xtable]; }; - flowBin = derive2 { name="flowBin"; version="1.28.0"; sha256="0lakff548jpgzm78s0090lkg29rdx5lzjh6088hfy5lmb9b0rbb9"; depends=[BiocGenerics class flowCore flowFP limma snow]; }; - flowCHIC = derive2 { name="flowCHIC"; version="1.26.0"; sha256="144ga5jm2gw9nhva0gfivhdsp5ykiw24ijgh3gl3cd76rpd9bnwm"; depends=[EBImage flowCore ggplot2 hexbin vegan]; }; - flowCL = derive2 { name="flowCL"; version="1.30.0"; sha256="1py230dl5cckg7gigd9xyjvcalaxxlzc2d43w7iz6srkv6bjsdn1"; depends=[graph Rgraphviz SPARQL]; }; - flowClean = derive2 { name="flowClean"; version="1.30.0"; sha256="0ddg9f8kh7yz822fhil9ywsy25v6az2qb78c7g72ppmx49faj6fs"; depends=[bit changepoint flowCore sfsmisc]; }; - flowClust = derive2 { name="flowClust"; version="3.30.0"; sha256="03xsmprrkxwkaksjlaxwp54mqfb3zlg6dbqhp87w78fwscisv76b"; depends=[Biobase BiocGenerics clue corpcor ellipse flowCore flowViz graph mnormt]; }; - flowCore = derive2 { name="flowCore"; version="2.4.0"; sha256="13xpbkxi53rxmhvpdiy6bydmhicmxd2gi96d9c1qx4lkss2f14nc"; depends=[BH Biobase BiocGenerics cytolib matrixStats Rcpp RcppArmadillo RProtoBufLib S4Vectors]; }; - flowCut = derive2 { name="flowCut"; version="1.2.0"; sha256="140jch6s2c2lg5h464j2yprv2xipdrss1gixra2yb9g65hdjqy1c"; depends=[Cairo e1071 flowCore flowDensity]; }; - flowCyBar = derive2 { name="flowCyBar"; version="1.28.0"; sha256="0qcb9nd24hjvm792w3g0cjx9mwcfkz91yf49g66m7fkbkbwym6ml"; depends=[gplots vegan]; }; - flowDensity = derive2 { name="flowDensity"; version="1.26.0"; sha256="1axl2f7gwi2swaqkagl8fykb4fx14c8cp1fc8679yp52k3mzai5q"; depends=[car flowCore flowViz flowWorkspace gplots RFOC rgeos sp]; }; - flowFP = derive2 { name="flowFP"; version="1.50.0"; sha256="0agz3p35gq2ax703mpmjccfym6d61ywjka58df57gbk3f41hd03r"; depends=[Biobase BiocGenerics flowCore flowViz]; }; - flowGraph = derive2 { name="flowGraph"; version="1.0.0"; sha256="19c97r9cqc61jnf1kcfbcnnkjmnq5a1cw7l0vwrjyin5xy5i0088"; depends=[data_table effsize furrr future ggiraph ggplot2 ggrepel gridExtra htmlwidgets igraph Matrix matrixStats purrr Rdpack stringi stringr visNetwork]; }; - flowMap = derive2 { name="flowMap"; version="1.30.0"; sha256="187lz2akz31r2h52b7b9rmqfdjlhrpvh5539nl68r6rnxsakq1gz"; depends=[abind ade4 doParallel Matrix reshape2 scales]; }; - flowMatch = derive2 { name="flowMatch"; version="1.28.0"; sha256="10c2harls0r0jnz4hiisl08pm19k3rqx9ci2zdh4827vwgcxs5pa"; depends=[Biobase flowCore Rcpp]; }; - flowMeans = derive2 { name="flowMeans"; version="1.52.0"; sha256="1awskkq48qhv4v9glxgfqi0kgwqd62fbj641k4vvxfcwsf2c7bfg"; depends=[Biobase feature flowCore rrcov]; }; - flowMerge = derive2 { name="flowMerge"; version="2.40.0"; sha256="1ailbfy8rvpsvz7rr7dqp3yfa836nng6ihgxcvdifwj3l5fih6ib"; depends=[feature flowClust flowCore foreach graph Rgraphviz rrcov snow]; }; - flowPeaks = derive2 { name="flowPeaks"; version="1.38.0"; sha256="16p5yxgb2hblxzwk2qsa2z191wzz5dnvbg0a4wrhi25hy144b225"; depends=[]; }; - flowPloidy = derive2 { name="flowPloidy"; version="1.18.0"; sha256="14y0fxa4d653k3izf7y21k2jiz3byx3xc6pckycxp38lvm44yz87"; depends=[car caTools flowCore knitr minpack_lm rmarkdown shiny]; }; - flowPlots = derive2 { name="flowPlots"; version="1.40.0"; sha256="15arica3hk5mlk3jvk376nrivq31z4amy8ggn6k0mm834gaxgnwn"; depends=[]; }; - flowSpecs = derive2 { name="flowSpecs"; version="1.6.0"; sha256="0a3cd0sv8jf36147vz6vi24m07c92m31vf62bhihad86ic9kp07y"; depends=[Biobase BiocGenerics BiocParallel flowCore ggplot2 reshape2 zoo]; }; - flowStats = derive2 { name="flowStats"; version="4.4.0"; sha256="1yr5m7qmhmm52c70z3d0zy4zgf0hja7r2ig9yljv5w86bzm962x6"; depends=[Biobase BiocGenerics cluster fda flowCore flowViz flowWorkspace KernSmooth ks lattice MASS ncdfFlow RColorBrewer rrcov]; }; - flowTime = derive2 { name="flowTime"; version="1.16.1"; sha256="04a43h0vc5gdfafrm57y5x7wxv7sr1javwl713w4zvajgcd3sbjr"; depends=[dplyr flowCore magrittr plyr rlang tibble]; }; - flowTrans = derive2 { name="flowTrans"; version="1.44.0"; sha256="0ldbsn3d4riiidgf2k8vcq4k7s5ywc9lxw7kywnhvqhjqywfwn84"; depends=[flowClust flowCore flowViz]; }; - flowUtils = derive2 { name="flowUtils"; version="1.56.0"; sha256="1sdwgyvrsz0pp60zdfrcgb7bs8s87j7257p8ck813ydizc324x9w"; depends=[Biobase corpcor flowCore graph RUnit XML]; }; - flowVS = derive2 { name="flowVS"; version="1.24.0"; sha256="0rh01h5d4skbvbfs4x42xmp1cp5q9higkwh92v0zdzpb85kcc30b"; depends=[flowCore flowStats flowViz]; }; - flowViz = derive2 { name="flowViz"; version="1.56.0"; sha256="17x04xwyw2pp5zkhgvrmxkb8cbrv9wql6xhjsfpq0n6yd9dxqc1v"; depends=[Biobase flowCore hexbin IDPmisc KernSmooth lattice latticeExtra MASS RColorBrewer]; }; - flowWorkspace = derive2 { name="flowWorkspace"; version="4.4.0"; sha256="1a9qb2dcvwgb3z0vdbbzn1rzy77d3da72kirs272344hdx9b2cx9"; depends=[aws_s3 aws_signature BH Biobase BiocGenerics cytolib data_table DelayedArray digest dplyr flowCore ggplot2 graph lattice latticeExtra matrixStats ncdfFlow RBGL Rcpp RcppArmadillo RcppParallel Rgraphviz Rhdf5lib RProtoBufLib S4Vectors scales XML]; }; - flowcatchR = derive2 { name="flowcatchR"; version="1.26.0"; sha256="17vkbj2pzc5pqy07c6ygc4akklnaclxb3m1fl8kl162qb13wj1d8"; depends=[abind BiocParallel colorRamps EBImage plotly shiny]; }; - fmcsR = derive2 { name="fmcsR"; version="1.34.0"; sha256="10nksgl34hrsjq7z4fbf3wbk5gsvsv81l0afh6r9dlxz86kixypd"; depends=[BiocGenerics ChemmineR RUnit]; }; - fmrs = derive2 { name="fmrs"; version="1.2.0"; sha256="06ysjavwmxg4mqplsyvhw17v3a0fjz5c3zsz8qm3jmmj7a8wan73"; depends=[survival]; }; - fobitools = derive2 { name="fobitools"; version="1.0.0"; sha256="05i09412dh62s8cp26j6q9xa9nkigyqzqx2v9vpgq4498bs9qzwy"; depends=[clisymbols crayon dplyr fgsea ggplot2 ggraph magrittr ontologyIndex purrr RecordLinkage stringr textclean tictoc tidygraph tidyr vroom]; }; - frenchFISH = derive2 { name="frenchFISH"; version="1.4.0"; sha256="1l2g3j3q83ir471zfayjq3d36gg6jsh9v2cg3jlhr1x3k6w0rwx9"; depends=[MCMCpack NHPoisson]; }; - frma = derive2 { name="frma"; version="1.44.0"; sha256="1p28w134jkg0bvb3a5dx89lggx8jhladv7q04lpmfzwsm00304p7"; depends=[affy Biobase BiocGenerics DBI MASS oligo oligoClasses preprocessCore]; }; - frmaTools = derive2 { name="frmaTools"; version="1.44.0"; sha256="0z9x0k3kc2944k8p2ybs0ilc3gh71lblw1lr75rrdhy2xlkg9shs"; depends=[affy Biobase DBI preprocessCore]; }; - funtooNorm = derive2 { name="funtooNorm"; version="1.16.0"; sha256="03v9l27sbx4bzgdss7b384q1qgaqm07mna88w7qkj8lahc68a0r5"; depends=[GenomeInfoDb IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest matrixStats minfi pls]; }; - gCrisprTools = derive2 { name="gCrisprTools"; version="1.20.0"; sha256="0rr2mnnf580g484mrsijnzr9zyv6sy2kacpsqqjknkgz0px800w5"; depends=[Biobase ggplot2 limma PANTHER_db rmarkdown RobustRankAggreg SummarizedExperiment]; }; - gaga = derive2 { name="gaga"; version="2.38.0"; sha256="1wygnl8xid27xdbfmhiqw3y6fdbszdm8v4jid9xr6xy47yn6bfla"; depends=[Biobase coda EBarrays mgcv]; }; - gage = derive2 { name="gage"; version="2.42.0"; sha256="0z7hrwdm6my6p7z04bcpfhqk72pd0s1bdzvsiiym59qj79fbvb83"; depends=[AnnotationDbi GO_db graph KEGGREST]; }; - gaggle = derive2 { name="gaggle"; version="1.60.0"; sha256="0rz243xv7wp3ihsfxf856bli2gb1ngrbr56kd6m6rm2nkzpgzdb0"; depends=[graph rJava RUnit]; }; - gaia = derive2 { name="gaia"; version="2.36.0"; sha256="0pflv2qv44yzbxiq37is5prvx69hnj3rn0r3m306gz05cphw8gww"; depends=[]; }; - garfield = derive2 { name="garfield"; version="1.20.0"; sha256="1wmgzlhqb4ay9mcfwgcqvzsz4ahmik065i72ha1xc49jzn5155lc"; depends=[]; }; - gcapc = derive2 { name="gcapc"; version="1.16.0"; sha256="05lfx1zdw60ngr6vi2nd9sxpws2fgpy5q5i8nj2633gg5xag7kca"; depends=[BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS matrixStats Rsamtools S4Vectors]; }; - gcatest = derive2 { name="gcatest"; version="1.22.0"; sha256="09lf136skwib4vygsg3h6svcj13m7w13517bnwsng1fj6a66yzbd"; depends=[lfa]; }; - gcrma = derive2 { name="gcrma"; version="2.64.0"; sha256="1z4abw9s2hs3csnx25nli7fpvb3rh3l0swzl0wfqp087fcs78pxi"; depends=[affy affyio Biobase BiocManager Biostrings XVector]; }; - gdsfmt = derive2 { name="gdsfmt"; version="1.28.1"; sha256="1w3z718q3bhh8bp71va9pbcd62pwbvgjw33ffg960jya40xssvc7"; depends=[]; }; - geNetClassifier = derive2 { name="geNetClassifier"; version="1.32.0"; sha256="1i1cavbbvxzqgqxfmikghnls18jrq12hb953mjrwa95lkhzdxm2d"; depends=[Biobase e1071 EBarrays minet]; }; - gemini = derive2 { name="gemini"; version="1.6.0"; sha256="1y7j9cygrkw8a69rvfl5v5vwfchfx477cr5jnmvdi65xff6sv6v5"; depends=[dplyr ggplot2 magrittr mixtools pbmcapply scales]; }; - genArise = derive2 { name="genArise"; version="1.68.0"; sha256="013ipji3kq79vxqd15vgl6akrigk2nk2d8bjaz0krci0v7f3mzn1"; depends=[locfit tkrplot xtable]; }; - genbankr = derive2 { name="genbankr"; version="1.20.0"; sha256="1ycmk5qhp1dvbrffqd08pmq5vnc6jywrdkw3g44dmqa00hwy3lbi"; depends=[Biobase BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges rtracklayer S4Vectors VariantAnnotation]; }; - geneAttribution = derive2 { name="geneAttribution"; version="1.18.0"; sha256="1sfhcdzafhc40iwj58i3vbivkpq4avjliwkbqjz0j7ps905q0n9q"; depends=[BiocGenerics GenomeInfoDb GenomicFeatures GenomicRanges IRanges org_Hs_eg_db rtracklayer]; }; - geneClassifiers = derive2 { name="geneClassifiers"; version="1.16.0"; sha256="1lac0v7mrwrf6m5knb7wgv001n60ajssz5jhwxrh6qrdm1xjkjfm"; depends=[Biobase BiocGenerics]; }; - geneRecommender = derive2 { name="geneRecommender"; version="1.64.0"; sha256="0rbnb09l3nyci962hl5i8m4fsiy97nngyg3ficlk4pihsx0bwwz8"; depends=[Biobase]; }; - geneRxCluster = derive2 { name="geneRxCluster"; version="1.28.0"; sha256="0vqwbp8b74a33dhbdkisn8nhvprxsi9pqgw92f0s7j367313qljz"; depends=[GenomicRanges IRanges]; }; - geneXtendeR = derive2 { name="geneXtendeR"; version="1.18.0"; sha256="1gqpcibv9mscxna1h8kkl7shw4gvs2z0jrrg18hrjx918pq6wifb"; depends=[AnnotationDbi BiocStyle data_table dplyr GO_db networkD3 org_Rn_eg_db RColorBrewer rtracklayer SnowballC tm wordcloud]; }; - genefilter = derive2 { name="genefilter"; version="1.74.1"; sha256="0lsh6akhqm1fadxr7066rcx5y7rnd020icx2cq0bfpymz6ajzsvx"; depends=[annotate AnnotationDbi Biobase BiocGenerics survival]; }; - genefu = derive2 { name="genefu"; version="2.24.2"; sha256="06nak5izjacr9708d134m6y7fnnhy7pylgjl843zdz9cqw5qnjch"; depends=[AIMS amap biomaRt iC10 impute limma mclust survcomp]; }; - geneplast = derive2 { name="geneplast"; version="1.18.0"; sha256="1lfwj7xhkk8gi1arr5mf38s44gb6j450ai5ir83y5m7mw6s0vphb"; depends=[ape data_table igraph snow]; }; - geneplotter = derive2 { name="geneplotter"; version="1.70.0"; sha256="1d085lfa3yif5wkys1fb0zzgg0cqwd1y18vasgqqdr6rva075d4z"; depends=[annotate AnnotationDbi Biobase BiocGenerics lattice RColorBrewer]; }; - genoCN = derive2 { name="genoCN"; version="1.44.0"; sha256="17wy1maxdx8bgyyl702d2xv36a3xxcv4illb2wfrckgqpbfszaib"; depends=[]; }; - genomation = derive2 { name="genomation"; version="1.24.0"; sha256="0qa3b4mfd7l1sy4pw64zr2d90y5apah900krxjl4x39acygg0i2r"; depends=[Biostrings BSgenome data_table GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridBase impute IRanges matrixStats plotrix plyr Rcpp readr reshape2 Rsamtools rtracklayer S4Vectors seqPattern]; }; - genomeIntervals = derive2 { name="genomeIntervals"; version="1.48.0"; sha256="0607nl792f12a2bdxlvljxh6q6j2k3r48mx0pira769s8yzfqn03"; depends=[BiocGenerics GenomeInfoDb GenomicRanges intervals IRanges S4Vectors]; }; - genomes = derive2 { name="genomes"; version="3.22.0"; sha256="09219wbqsnjpn8x2ys25qzmfl0v1xmknlcda024a8iag182j2lkm"; depends=[curl readr]; }; - genotypeeval = derive2 { name="genotypeeval"; version="1.24.0"; sha256="0q0xdr21pgn1a12cxvjrkzcan0aw4nwlh4k7y4h5axy2kvzq21yw"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges ggplot2 IRanges rtracklayer VariantAnnotation]; }; - genphen = derive2 { name="genphen"; version="1.20.0"; sha256="1yykvk3l1swqfafwwmx29klz6rnd3v3k7wdkkiwrdbg7v6y85g3c"; depends=[Biostrings doParallel e1071 foreach ranger Rcpp rPref rstan]; }; - gep2pep = derive2 { name="gep2pep"; version="1.12.0"; sha256="1db88grh7vip52283pln5m2l2jsqs900q847zfqydlgv32kdh2rr"; depends=[Biobase digest foreach GSEABase iterators repo rhdf5 XML]; }; - gespeR = derive2 { name="gespeR"; version="1.24.0"; sha256="01n1bz47cacdbggnp2zkwx5yjy0r06ckm7kmdb795av1vpk9ndgm"; depends=[Biobase biomaRt cellHTS2 doParallel dplyr foreach ggplot2 glmnet Matrix reshape2]; }; - getDEE2 = derive2 { name="getDEE2"; version="1.2.0"; sha256="0d7m96bgm4grqb02symchifrykxali3j21iml451gixd8fxmhmgj"; depends=[htm2txt SummarizedExperiment]; }; - geva = derive2 { name="geva"; version="1.0.0"; sha256="148q7yw3z09f66rwsy5nqzg20hac3gdssf9m1j3b9vkki4gvcyzj"; depends=[dbscan fastcluster matrixStats]; }; - ggbio = derive2 { name="ggbio"; version="1.40.0"; sha256="0k3dxacrwgyrkvm7ggc2s1s1pbfs6c0a7ngykkj7jnc73czvnilx"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings biovizBase BSgenome ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GGally ggplot2 gridExtra gtable Hmisc IRanges OrganismDbi reshape2 rlang Rsamtools rtracklayer S4Vectors scales SummarizedExperiment VariantAnnotation]; }; - ggcyto = derive2 { name="ggcyto"; version="1.20.0"; sha256="0jd6m84m4znnpix4bcgdby7mnflsn206f5x2vw9n8rxnwzx77wpg"; depends=[data_table flowCore flowWorkspace ggplot2 gridExtra hexbin ncdfFlow plyr RColorBrewer rlang scales]; }; - ggtree = derive2 { name="ggtree"; version="3.0.4"; sha256="0xf4b9vfdyzzivwgw4ymapl5bb4k9p04mmr53822kxgfd5qrs1zx"; depends=[ape aplot dplyr ggfun ggplot2 magrittr purrr rlang scales tidyr tidytree treeio yulab_utils]; }; - ggtreeExtra = derive2 { name="ggtreeExtra"; version="1.2.3"; sha256="19hp5hl5fyw7zk45hgxxldg84wwg3jrpx377j7g61bjv5wjzp0ig"; depends=[ggnewscale ggplot2 ggtree rlang]; }; - girafe = derive2 { name="girafe"; version="1.44.0"; sha256="0f6v7h59p9xqb6zvwx250g4drszmd88lp39sbkyyc2nqvsldxg9g"; depends=[Biobase BiocGenerics Biostrings genomeIntervals intervals IRanges Rsamtools S4Vectors ShortRead]; }; - glmGamPoi = derive2 { name="glmGamPoi"; version="1.4.0"; sha256="19k0g1xklfllrgpmpwy1984w1f4w801ph8svrnyaf2p5kz6r9n4w"; depends=[beachmat BiocGenerics DelayedArray DelayedMatrixStats HDF5Array matrixStats Rcpp RcppArmadillo SummarizedExperiment]; }; - glmSparseNet = derive2 { name="glmSparseNet"; version="1.10.0"; sha256="0949sq4nwbdnpagcl4qazg7rx6c88alkm8zfalcan6lvk3q50rw0"; depends=[biomaRt dplyr forcats futile_logger ggplot2 glmnet glue httr loose_rock Matrix MultiAssayExperiment readr reshape2 sparsebn sparsebnUtils stringr SummarizedExperiment survminer]; }; - globalSeq = derive2 { name="globalSeq"; version="1.20.0"; sha256="0j2nh12laf377l3q5dlfq2jp1zdz38m8snspgcphd848ba792rlf"; depends=[]; }; - globaltest = derive2 { name="globaltest"; version="5.46.0"; sha256="1f992kqil9c6gfai5z558mpihmp084qmimvfi7ndmqz69nryj2iz"; depends=[annotate AnnotationDbi Biobase survival]; }; - gmapR = derive2 { name="gmapR"; version="1.34.0"; sha256="1ir2ww5nll9s601z5nl9w7nhmkjzkadj8ahjxbda8l359vl2zmfa"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; - gmoviz = derive2 { name="gmoviz"; version="1.4.0"; sha256="1574gs7h9c77d9rfvxjdnvqwibhccc2mphjcginfqhzac3yj8p87"; depends=[BiocGenerics Biostrings circlize colorspace ComplexHeatmap GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gridBase IRanges pracma Rsamtools rtracklayer S4Vectors]; }; - goProfiles = derive2 { name="goProfiles"; version="1.54.0"; sha256="1am2y6hsmx0h54x7bdix272c57fi2zc2sdjj8g36fzmqvvv98cpm"; depends=[AnnotationDbi Biobase CompQuadForm GO_db stringr]; }; - goSTAG = derive2 { name="goSTAG"; version="1.16.0"; sha256="1chd8jsws01am71an1y2y1ff4kwb61sx6zyk0nq56wx53iwvfp9j"; depends=[AnnotationDbi biomaRt GO_db memoise]; }; - goTools = derive2 { name="goTools"; version="1.66.0"; sha256="1j9wblr9bbj38bdy6fxrqfzk4rk1c5l2ycdvdis9mk84h7physwv"; depends=[AnnotationDbi GO_db]; }; - goseq = derive2 { name="goseq"; version="1.44.0"; sha256="07qrxssx4rb8r958r1smx8xfpzdxpp55hci3201hcmz3mxz77i0s"; depends=[AnnotationDbi BiasedUrn BiocGenerics geneLenDataBase GO_db mgcv]; }; - gpart = derive2 { name="gpart"; version="1.10.0"; sha256="12ylbbsgiwpx0lsk96v6kh869hg00hbr4nrd0h3qh54qj0xfdrgh"; depends=[AnnotationDbi biomaRt data_table GenomicRanges Homo_sapiens igraph IRanges OrganismDbi Rcpp TxDb_Hsapiens_UCSC_hg38_knownGene]; }; - gpls = derive2 { name="gpls"; version="1.64.0"; sha256="0rpyyvg0kdj08l6njm61gxn43dvmvrq8vlzdgdw0x2kfhmnzlrhx"; depends=[]; }; - gprege = derive2 { name="gprege"; version="1.36.0"; sha256="1ykybxyzr6ksycxl4d4k4a9c4vjg2xjxa2qhr8827sczrwpchg07"; depends=[gptk]; }; - gpuMagic = derive2 { name="gpuMagic"; version="1.8.0"; sha256="0xvavfiy5lhmhg5mqxrhbjp5pqv5cz23n7bkn857h6nln9cwybar"; depends=[BiocGenerics Deriv DescTools digest pryr Rcpp stringr]; }; - granulator = derive2 { name="granulator"; version="1.0.0"; sha256="0m11l4889nc7gv3kvsx9m6cc8vjkskxnv18fkw9hai5c5p7iy6n3"; depends=[cowplot dplyr dtangle e1071 epiR ggplot2 ggplotify limSolve magrittr MASS nnls pheatmap purrr rlang tibble tidyr]; }; - graper = derive2 { name="graper"; version="1.8.0"; sha256="1005srn4kjz7hfaw4yiggl63ia0am001j1mrsgrp2bf2362rhxdb"; depends=[BH cowplot ggplot2 Matrix matrixStats Rcpp RcppArmadillo]; }; - graph = derive2 { name="graph"; version="1.70.0"; sha256="1i7s198d5kw4gk6nqqsd3vqaknj4493p822f2za8q95gv6x02rxa"; depends=[BiocGenerics]; }; - graphite = derive2 { name="graphite"; version="1.38.0"; sha256="11bgz6951nfygxp3fm0190gf2bb5zplis1bc0am4757liw4qybhf"; depends=[AnnotationDbi checkmate graph httr rappdirs]; }; - groHMM = derive2 { name="groHMM"; version="1.26.0"; sha256="1h63vg1iskw79ijg5h1b9097ams8pp3kvnlawlfci6xfli07xpkj"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS rtracklayer S4Vectors]; }; - gscreend = derive2 { name="gscreend"; version="1.6.0"; sha256="0rfvcbf54cwmyzis588gnaqidg4r7fvv2pfmjzvb4zfxi6sv12ak"; depends=[BiocParallel fGarch nloptr SummarizedExperiment]; }; - gsean = derive2 { name="gsean"; version="1.12.0"; sha256="02q2z84fwr66vamiqbf8zkc21gydplsxsq20cpinvjggpqhk5mqd"; depends=[fgsea PPInfer]; }; - gtrellis = derive2 { name="gtrellis"; version="1.24.0"; sha256="0l5271cpzjlm4m0v6xcdg2vxlbhn53x1fd59ynb9jwll93av5h1f"; depends=[circlize GenomicRanges GetoptLong IRanges]; }; - gwascat = derive2 { name="gwascat"; version="2.24.0"; sha256="0109cxsviq1sk5hfwkjzd0y1kpm934287asjjd0j8jhh4b0ah2b2"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges readr S4Vectors snpStats VariantAnnotation]; }; - gwasurvivr = derive2 { name="gwasurvivr"; version="1.10.0"; sha256="1gpk24d7w2my69zz4df0ifjjayxjv9p7wfwgbl71xm54mk8a2i17"; depends=[GWASTools matrixStats SNPRelate SummarizedExperiment survival VariantAnnotation]; }; - h5vc = derive2 { name="h5vc"; version="2.26.1"; sha256="10m7qcvv7q642syrhf6h9l2lxnd1gsap4r1rrwwk53wg7zln8w8r"; depends=[abind BatchJobs BiocParallel Biostrings GenomeInfoDb GenomicRanges ggplot2 gridExtra h5vcData IRanges reshape rhdf5 Rhtslib Rsamtools S4Vectors]; }; - hapFabia = derive2 { name="hapFabia"; version="1.34.0"; sha256="0182zihrdpqqcgbws69adq0sfwczd7794ygbmz211wzppszv5zzv"; depends=[Biobase fabia]; }; - hca = derive2 { name="hca"; version="1.0.3"; sha256="1bk3hmw5r9wp8ljcdmafsr6shcxh5x4zcqba2y527cg40abgga9p"; depends=[BiocFileCache dplyr httr jsonlite tibble tidyr]; }; - heatmaps = derive2 { name="heatmaps"; version="1.16.0"; sha256="0bw6l44d1xx8qkc0y3nv378q8nb5bwab7jvk3zndn3jy1wf835sn"; depends=[BiocGenerics Biostrings EBImage GenomeInfoDb GenomicRanges IRanges KernSmooth Matrix plotrix RColorBrewer]; }; - hiAnnotator = derive2 { name="hiAnnotator"; version="1.26.0"; sha256="1snw5q14p236x630k8si46ky90736yws0k8sqla8gw1j13ipicry"; depends=[BSgenome dplyr foreach GenomicRanges ggplot2 iterators rtracklayer scales]; }; - hiReadsProcessor = derive2 { name="hiReadsProcessor"; version="1.28.0"; sha256="1yhwbn93g4h1154h87kzk5iyam8cxs9wn3rf1aicb141d635c4cr"; depends=[BiocGenerics BiocParallel Biostrings dplyr GenomicAlignments GenomicRanges hiAnnotator readxl sonicLength]; }; - hierGWAS = derive2 { name="hierGWAS"; version="1.22.0"; sha256="0rfil5f6fwij11yyg05y7rkssnzmdgg9ip26f8vph1x3kmaiyrii"; depends=[fastcluster fmsb glmnet]; }; - hierinf = derive2 { name="hierinf"; version="1.10.0"; sha256="0cfgq38012fjgx66zlscfs3xbsrd8w1bc2xzc87768b0j6rfw0rd"; depends=[fmsb glmnet]; }; - hipathia = derive2 { name="hipathia"; version="2.8.0"; sha256="0qrwxlwxcn7jq9nnvhxavf6r30xz3z7im0y7qkg2hf1c5qysd0yq"; depends=[AnnotationHub coin DelayedArray igraph limma matrixStats MultiAssayExperiment preprocessCore S4Vectors servr SummarizedExperiment]; }; - hmdbQuery = derive2 { name="hmdbQuery"; version="1.12.1"; sha256="0hslspr69p9i0ny9srcyd8br57hfid1wpnz0ir28vmd1zcnq2dc4"; depends=[S4Vectors XML]; }; - hopach = derive2 { name="hopach"; version="2.52.0"; sha256="1a5cvx0ziiw45jwzcpbdjqdz9svmbygdz7rl3lvw8z4gl8alhbzb"; depends=[Biobase BiocGenerics cluster]; }; - hpar = derive2 { name="hpar"; version="1.34.0"; sha256="0q5pp04rq2gsh1kibvp8bvjkqc1kb46qpnj6agqp2vyqhrrfrm99"; depends=[]; }; - hummingbird = derive2 { name="hummingbird"; version="1.2.0"; sha256="1jxm6rynr4q41g0ryx7smib1jyisafa38hijji6n8dgrsmmhmkf4"; depends=[GenomicRanges IRanges Rcpp SummarizedExperiment]; }; - hypeR = derive2 { name="hypeR"; version="1.8.0"; sha256="0lg3slb35nmpakbxskfmk774hhxwzg660gw4z0pzacm34r8syzh9"; depends=[dplyr ggforce ggplot2 htmltools httr igraph kableExtra magrittr msigdbr openxlsx purrr R6 reactable reshape2 rlang rmarkdown scales shiny stringr visNetwork]; }; - hyperdraw = derive2 { name="hyperdraw"; version="1.44.0"; sha256="1qkxixkgvvfha0ii8rwwcbrbjmbbxsy8afv5ymcq01k3hbykx44r"; depends=[graph hypergraph Rgraphviz]; }; - hypergraph = derive2 { name="hypergraph"; version="1.64.0"; sha256="01knpd964m2g9vwd7c72qnc8g2p2pzhvk7lin4mhvcmb3pvsdlh7"; depends=[graph]; }; - iASeq = derive2 { name="iASeq"; version="1.36.0"; sha256="1zxi6qs84l26bljrm8w551lpndsbsivw9lzskqa8hisk7v9mhnwg"; depends=[]; }; - iBBiG = derive2 { name="iBBiG"; version="1.36.0"; sha256="1hj0b13zly6i23h1l4v62g7w7napdh4k8i01yypgysdkn6y7bn1w"; depends=[ade4 biclust xtable]; }; - iBMQ = derive2 { name="iBMQ"; version="1.32.0"; sha256="15yyz68afmdyw8xpxk4j8g7vhqrmndhr7hy0qfw2inb082fggh59"; depends=[Biobase ggplot2]; }; - iCARE = derive2 { name="iCARE"; version="1.20.0"; sha256="1vjxm4dkrr8wghrg8mf70csdmnjmksq3nh1s5zndfjvcbz233m7f"; depends=[gtools Hmisc plotrix]; }; - iCNV = derive2 { name="iCNV"; version="1.12.0"; sha256="0672sb46iqrbab8zfcl2vmkxg5y9y394nn18r0i6ysc4ln97v5vr"; depends=[CODEX data_table dplyr fields ggplot2 rlang tidyr truncnorm]; }; - iCOBRA = derive2 { name="iCOBRA"; version="1.20.0"; sha256="190rkx3sivj68in36hhin5v535yd6fvlvm7l90w1bl38zpb7p6jn"; depends=[dplyr DT ggplot2 limma reshape2 ROCR scales shiny shinyBS shinydashboard UpSetR]; }; - iCheck = derive2 { name="iCheck"; version="1.22.0"; sha256="02mlfdlgsj23j3gxahalvxqz29b3zrh7qy7drd11dj9689b66hbw"; depends=[affy Biobase GeneSelectMMD gplots limma lmtest lumi MASS preprocessCore randomForest rgl scatterplot3d]; }; - iChip = derive2 { name="iChip"; version="1.46.0"; sha256="0jjdpx4rz22ib0zcbnjndbvimrhm107i7vmg96a8zqxhi9335cvn"; depends=[limma]; }; - iClusterPlus = derive2 { name="iClusterPlus"; version="1.28.0"; sha256="1haj25c4cmmjjvh181b41a9pvkh92f7k2w4ljn17iqg31vm45za1"; depends=[]; }; - iGC = derive2 { name="iGC"; version="1.22.0"; sha256="1kygn8xawglg7n39m45l3g3s31hm4l2hyi6hc93h656i990qdwgv"; depends=[data_table plyr]; }; - iPAC = derive2 { name="iPAC"; version="1.36.0"; sha256="1f02319p9q7jn3zw2pqxvy9pan0wfz6qc4gcf0vsdxzll156wbfd"; depends=[Biostrings gdata multtest scatterplot3d]; }; - iSEE = derive2 { name="iSEE"; version="2.4.0"; sha256="0rqzy8dj48md72b2c4d1mb1immncv0xqsmal6k5f34f9ckgyz580"; depends=[BiocGenerics circlize colourpicker ComplexHeatmap DT ggplot2 ggrepel igraph mgcv rintrojs S4Vectors shiny shinyAce shinydashboard shinyjs shinyWidgets SingleCellExperiment SummarizedExperiment vipor viridisLite]; }; - iSEEu = derive2 { name="iSEEu"; version="1.4.0"; sha256="1zs11836hn57vvf4fjkq6nhsyw2qqhplk967b8mc9jsw97ah0dza"; depends=[colourpicker DT ggplot2 IRanges iSEE S4Vectors shiny shinyAce SingleCellExperiment SummarizedExperiment]; }; - iSeq = derive2 { name="iSeq"; version="1.44.0"; sha256="0yw9zg9210al5k8m1dzq5a1rn8kb2wcscbavdapk2zlz1qhs2cl5"; depends=[]; }; - iasva = derive2 { name="iasva"; version="1.10.0"; sha256="1i2jnyaayqwdz5sfa9lbbw7vjwk55cp30caiy4x09b0dsb5pxxdn"; depends=[BiocParallel cluster irlba SummarizedExperiment]; }; - ibh = derive2 { name="ibh"; version="1.40.0"; sha256="13gbgi1wymx36khnvhrr47q7laxhg6kxmcc8vmlfsv804ckcy4mx"; depends=[simpIntLists]; }; - icetea = derive2 { name="icetea"; version="1.10.0"; sha256="1yrbgwrwilgm15v0aqw160xid52qb7ggd0k0qc44bjgrn0xs7iqf"; depends=[BiocGenerics BiocParallel Biostrings csaw DESeq2 edgeR GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges limma Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment TxDb_Dmelanogaster_UCSC_dm6_ensGene VariantAnnotation]; }; - ideal = derive2 { name="ideal"; version="1.16.1"; sha256="0kag3l6bh0507c01ca7avgh7a55580fr189wgwfippiqhb2n8hj1"; depends=[AnnotationDbi base64enc BiocParallel DESeq2 dplyr DT GenomicRanges ggplot2 ggrepel GO_db goseq GOstats gplots heatmaply IHW IRanges knitr limma pcaExplorer pheatmap plotly rentrez rintrojs rmarkdown S4Vectors shiny shinyAce shinyBS shinydashboard stringr SummarizedExperiment topGO UpSetR]; }; - idiogram = derive2 { name="idiogram"; version="1.68.0"; sha256="08py2vllkqsarzgbk3r0jnd2dw18f71d1gb9qbbjrkac4i1f6rpk"; depends=[annotate Biobase plotrix]; }; - idpr = derive2 { name="idpr"; version="1.2.0"; sha256="17xvmwc0kpc74az89zp17qrd24ghnd11a76hb037pfyda285l067"; depends=[Biostrings dplyr ggplot2 jsonlite magrittr plyr rlang]; }; - idr2d = derive2 { name="idr2d"; version="1.6.0"; sha256="1yp0s9qbwdh34m6xxly4nf5j1f7n8cpxwqibwwb18wlklq8i4g22"; depends=[dplyr futile_logger GenomeInfoDb GenomicRanges ggplot2 idr IRanges magrittr reticulate scales stringr]; }; - igvR = derive2 { name="igvR"; version="1.12.0"; sha256="0w1p9y3j45zw2gl5akdjkxla8vyyq8yvj70czp44dq6898d8875l"; depends=[BiocGenerics BrowserViz GenomicAlignments GenomicRanges httpuv MotifDb RColorBrewer rtracklayer seqLogo VariantAnnotation]; }; - illuminaio = derive2 { name="illuminaio"; version="0.34.0"; sha256="1sy0i3nbzsw4ymdxaiwpyx1vcg9yp3i8xfjcymqwhv95j3kyglv9"; depends=[base64]; }; - imageHTS = derive2 { name="imageHTS"; version="1.42.0"; sha256="104b7zg7svqka44rdyfk3ay0qwmh9gwynx65cdxdl6wfjr2jlqfg"; depends=[Biobase cellHTS2 e1071 EBImage hwriter vsn]; }; - immunoClust = derive2 { name="immunoClust"; version="1.24.0"; sha256="0f02vjivhb3niv32mf1hnvv9pljgww3mya5hw7ryshkwf0rhwa49"; depends=[flowCore lattice]; }; - immunotation = derive2 { name="immunotation"; version="1.0.1"; sha256="04by6nr8szn62cil0rb748089l1j9zbfn6lazb6qdxwkqygk7b7k"; depends=[curl ggplot2 maps ontologyIndex readr rlang rvest stringr tidyr xml2]; }; - impute = derive2 { name="impute"; version="1.66.0"; sha256="0pprkv25avxhllddcssvqvy3nibmqkfwaq4xnlhka7858gyiyd1k"; depends=[]; }; - infercnv = derive2 { name="infercnv"; version="1.8.1"; sha256="1li3zqwh00qf0a6kjbli703j530kapb5fr0sy084rc6n32kqfkyq"; depends=[ape argparse BiocGenerics caTools coda coin digest doParallel dplyr edgeR fastcluster fitdistrplus foreach futile_logger future ggplot2 gplots gridExtra HiddenMarkov leiden Matrix phyclust RANN RColorBrewer reshape rjags SingleCellExperiment SummarizedExperiment tidyr]; }; - infinityFlow = derive2 { name="infinityFlow"; version="1.2.0"; sha256="088b0m63205vcwjja0lj0mj6h90m0abfj46lsdghxjd2gwz6r8km"; depends=[Biobase flowCore generics gtools matlab pbapply png raster uwot xgboost]; }; - intansv = derive2 { name="intansv"; version="1.32.0"; sha256="0xqk4kyjv95vmhkpx7lhdwavpf0v1sg5829wm5fg88jlpn8zr30s"; depends=[BiocGenerics GenomicRanges ggbio IRanges plyr]; }; - interacCircos = derive2 { name="interacCircos"; version="1.2.0"; sha256="17647z6h91656rdsynn3dg9b853n32nvl7sl108w9d9iby806gjb"; depends=[htmlwidgets plyr RColorBrewer]; }; - interactiveDisplay = derive2 { name="interactiveDisplay"; version="1.30.0"; sha256="1jgvm3vwaz62hrhs3qsvmpy4xh5q8l6hbhg53gx75f08pg0ks8bp"; depends=[AnnotationDbi BiocGenerics Category ggplot2 gridSVG interactiveDisplayBase plyr RColorBrewer reshape2 shiny XML]; }; - interactiveDisplayBase = derive2 { name="interactiveDisplayBase"; version="1.30.0"; sha256="00rgrrmglslgb6j7whp0m5dlyl4436r647br05rrpv8cxrmbs2iv"; depends=[BiocGenerics DT shiny]; }; - inveRsion = derive2 { name="inveRsion"; version="1.40.0"; sha256="0zp1ljx1wzyzvihjlv6ww5rfhqsnl6rffsczsc5arcn8583f7zk7"; depends=[haplo_stats]; }; - ipdDb = derive2 { name="ipdDb"; version="1.10.0"; sha256="0a0c8ls4dm671pdjlx3as3mai50v2j6fxdawlm5fy74nqvpahhfr"; depends=[AnnotationDbi AnnotationHub assertthat Biostrings DBI GenomicRanges IRanges RSQLite]; }; - isobar = derive2 { name="isobar"; version="1.38.0"; sha256="04894wnygby4f7mazg7wj25wrhdjmliw4k9sg4dcym7qvmw1qh37"; depends=[Biobase biomaRt distr ggplot2 plyr]; }; - isomiRs = derive2 { name="isomiRs"; version="1.20.0"; sha256="07jjvgkfgrj1kyj18y323pdr1d3b51s4kbwhikcz1v6zyfii06ha"; depends=[AnnotationDbi assertive_sets Biobase BiocGenerics broom cluster cowplot DEGreport DESeq2 DiscriMiner dplyr GenomicRanges GGally ggplot2 gplots gridExtra gtools IRanges limma RColorBrewer readr reshape rlang S4Vectors stringr SummarizedExperiment tibble tidyr]; }; - iterClust = derive2 { name="iterClust"; version="1.14.0"; sha256="0qxfb6dwmvhy15sd4rk4dac0mpy6ydhvjw5jq9w6frmzg13azrnx"; depends=[Biobase cluster]; }; - iterativeBMA = derive2 { name="iterativeBMA"; version="1.50.0"; sha256="0vr74j8x1n7qavg4cj5w08j7i18ndkw48wl9sxgcwfx1h9p8362y"; depends=[Biobase BMA leaps]; }; - iterativeBMAsurv = derive2 { name="iterativeBMAsurv"; version="1.50.0"; sha256="1fmbxn4lh4a49ixwv8qs1czlz2qz4s989mmia5pkinrymn08gyl6"; depends=[BMA leaps survival]; }; - iteremoval = derive2 { name="iteremoval"; version="1.12.0"; sha256="1xjhnm17g76r65rllai7pkxnlhd2rflpsimg2r1l8smqkhsqb1y1"; depends=[GenomicRanges ggplot2 magrittr SummarizedExperiment]; }; - ivygapSE = derive2 { name="ivygapSE"; version="1.14.1"; sha256="0hirk97ild9g7svzjgh6l58zjcrlbcxs7msf7155x7mmbiil8p14"; depends=[ggplot2 hwriter plotly S4Vectors shiny SummarizedExperiment survival survminer UpSetR]; }; - karyoploteR = derive2 { name="karyoploteR"; version="1.18.0"; sha256="11sgxz2xz685pgm8mf0hzm6aryx4fj5g3dlffjzpqxh3awfqa19p"; depends=[AnnotationDbi bamsignals bezier biovizBase digest GenomeInfoDb GenomicFeatures GenomicRanges IRanges memoise regioneR Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; - kebabs = derive2 { name="kebabs"; version="1.26.1"; sha256="04q7rgi2wfbq7zkaxq6xkx4v9plk6l87250w7y3djrkynqv6nxcl"; depends=[apcluster Biostrings e1071 IRanges kernlab LiblineaR Matrix Rcpp S4Vectors XVector]; }; - keggorthology = derive2 { name="keggorthology"; version="2.44.0"; sha256="1c25g3pw2aza61zrghh2kxrscdjc23nk2ly5pdz5phcyiim2z98p"; depends=[AnnotationDbi DBI graph hgu95av2_db]; }; - kissDE = derive2 { name="kissDE"; version="1.12.0"; sha256="00zw2hq4ncfcww9q1rcmh1zcf0ndgdiycmf71y7nwp8lwclrwf1b"; depends=[aod Biobase DESeq2 doParallel DSS foreach ggplot2 gplots matrixStats]; }; - lapmix = derive2 { name="lapmix"; version="1.58.0"; sha256="1845pchhjvr1k1m0zz3llp50jf1dig9p518qw15hlp9gd3hl1zw0"; depends=[Biobase]; }; - ldblock = derive2 { name="ldblock"; version="1.22.1"; sha256="16vp5psmigxdkkd6fbivb6s8mvd7rsnm771wsbjvayl2y7ig7kq4"; depends=[BiocGenerics EnsDb_Hsapiens_v75 ensembldb GenomeInfoDb GenomicFiles httr Matrix Rsamtools snpStats VariantAnnotation]; }; - lefser = derive2 { name="lefser"; version="1.2.0"; sha256="0wxv16di1cv14sv0nsfzkqlxxvmw0yi8a8qr12l5flzgq5dyz1ah"; depends=[coin ggplot2 MASS SummarizedExperiment]; }; - les = derive2 { name="les"; version="1.42.0"; sha256="11w7xk57wdrh2b47kj282wrshcy9rqj7vl537dpi7b7kjy7sz4g7"; depends=[boot fdrtool gplots RColorBrewer]; }; - levi = derive2 { name="levi"; version="1.10.0"; sha256="0x95159vbkry3lcblxqa9cc8hfcbmx3906xnmpl4cpl8fk3ydlfn"; depends=[colorspace dplyr DT ggplot2 httr igraph knitr RColorBrewer Rcpp reshape2 shiny shinydashboard shinyjs testthat xml2]; }; - lfa = derive2 { name="lfa"; version="1.22.0"; sha256="1lqcgb8v6xy8vi6i3pjyghiniwsq10a262b2j3smgghjg5dp8mf6"; depends=[corpcor]; }; - limma = derive2 { name="limma"; version="3.48.3"; sha256="0385ac0hvvml99krcgcpp6q7layjhzgp9xcxkcjrpfg5mjg1z4sx"; depends=[]; }; - limmaGUI = derive2 { name="limmaGUI"; version="1.68.0"; sha256="0pday8vb7kl10111nh5d7rcp3djy7wxmakam17d4032gfyslcj4j"; depends=[limma R2HTML tkrplot xtable]; }; - lionessR = derive2 { name="lionessR"; version="1.6.0"; sha256="0p1abfp4jvykrng190b9x8z3l0mgvbnbi59cqhv71ahvzcb0mm76"; depends=[S4Vectors SummarizedExperiment]; }; - lipidr = derive2 { name="lipidr"; version="2.6.0"; sha256="158i1fsxqm0qzxbnnq123vbd0qc46an1q0mzz7dx1nsh5q8qn0gv"; depends=[data_table dplyr fgsea forcats ggplot2 imputeLCMD limma magrittr rlang ropls S4Vectors SummarizedExperiment tidyr]; }; - lisaClust = derive2 { name="lisaClust"; version="1.0.0"; sha256="1slhdhg3i6cs2xlkravghjfnbv1bkfk5pgb5gx2f1cxl9mi2inb1"; depends=[BiocGenerics BiocParallel class concaveman data_table dplyr ggplot2 purrr S4Vectors spatstat_core spatstat_geom spicyR tidyr]; }; - lmdme = derive2 { name="lmdme"; version="1.34.0"; sha256="1irdhq21ln3a5f20hiwwa58z4v92bqlp43cyd4jwdq8k665lq3df"; depends=[limma pls stemHypoxia]; }; - loci2path = derive2 { name="loci2path"; version="1.12.0"; sha256="0msx3kpw06rsnfpm6mlrn700n8w1zaq000a86sps9hw15z1df2ka"; depends=[BiocParallel data_table GenomicRanges pheatmap RColorBrewer S4Vectors wordcloud]; }; - logicFS = derive2 { name="logicFS"; version="2.12.0"; sha256="0k2a718wxq8aqm3i7x01h0zwz7a69m604kkxq85x7gxrx2baqa79"; depends=[LogicReg mcbiopi survival]; }; - logitT = derive2 { name="logitT"; version="1.50.0"; sha256="1z51dy6z12qvb3py9w02j2w94vj8xsyar3mhz54spfkc5jka2bw6"; depends=[affy]; }; - lpNet = derive2 { name="lpNet"; version="2.24.0"; sha256="16kdc5xfiiv2vzmjywywfdx42qf01nbpyzfnq0gq4wnqjnqckxjc"; depends=[lpSolve]; }; - lpsymphony = derive2 { name="lpsymphony"; version="1.20.0"; sha256="0aw4b3p5z8ys7zlwy8s3bsqk03xwx42311yxr7q14w3f7sn3shzn"; depends=[]; }; - lumi = derive2 { name="lumi"; version="2.44.0"; sha256="0qjdxjdzfnnxcm07bf51v38388s5qf1i03l1sdb9jf3gxdh8yh02"; depends=[affy annotate AnnotationDbi Biobase DBI GenomicFeatures GenomicRanges KernSmooth lattice MASS methylumi mgcv nleqslv preprocessCore RSQLite]; }; - mAPKL = derive2 { name="mAPKL"; version="1.22.0"; sha256="061y4rcg0shdlk5h63jy2gib8bm775bz6xrzzxsrw4pp9bj67irk"; depends=[AnnotationDbi apcluster Biobase clusterSim e1071 igraph limma multtest parmigene reactome_db]; }; - mBPCR = derive2 { name="mBPCR"; version="1.46.0"; sha256="04218jnk1g37nmf03a3lkc0a0lc2s91d2b5i8isvcw293fdx3ckl"; depends=[Biobase GWASTools oligoClasses]; }; - mCSEA = derive2 { name="mCSEA"; version="1.12.0"; sha256="0ffvnvxmmb25pnh7v9bln9kaa99417aj3jhad1nbbdg0nvgcbx87"; depends=[biomaRt fgsea GenomicFeatures GenomicRanges ggplot2 Gviz Homo_sapiens IRanges limma mCSEAdata S4Vectors SummarizedExperiment]; }; - maCorrPlot = derive2 { name="maCorrPlot"; version="1.62.0"; sha256="0ry46nc49gjzb0f3xlj3yfb1j2air8czrkvbg69403bs39b4lidw"; depends=[lattice]; }; - maPredictDSC = derive2 { name="maPredictDSC"; version="1.30.0"; sha256="1k8zibi8pdcdhignm0i0ram8v1v6sqfkpv2wlyqsmr5z2wz79hqk"; depends=[affy AnnotationDbi caret class e1071 gcrma hgu133plus2_db limma LungCancerACvsSCCGEO MASS ROC ROCR]; }; - maSigPro = derive2 { name="maSigPro"; version="1.64.0"; sha256="192yd7pdx8smblzbqcjgbk6gy1vjy5n9s63za3yzigrkvf3mw1bq"; depends=[Biobase MASS mclust venn]; }; - maanova = derive2 { name="maanova"; version="1.62.0"; sha256="13bspz2x4dbpyldmy5qn2449jr14xrxxziczgp5cp351n3srx0l4"; depends=[Biobase]; }; - macat = derive2 { name="macat"; version="1.66.0"; sha256="1bwas3h5pcrkd5jyg30biqdcgkfpjdsi1y2llr7wwx6clrabls22"; depends=[annotate Biobase]; }; - made4 = derive2 { name="made4"; version="1.66.0"; sha256="1v8zpxxzmzkq1b88xx5ji9bn8xjas69s093864mywgr2dx3w25dc"; depends=[ade4 Biobase gplots RColorBrewer scatterplot3d SummarizedExperiment]; }; - maftools = derive2 { name="maftools"; version="2.8.05"; sha256="0760qp75rawanfbfx834ds7r7lb3q6g3ix38sv7z84nm34bc77wl"; depends=[data_table RColorBrewer Rhtslib survival zlibbioc]; }; - maigesPack = derive2 { name="maigesPack"; version="1.56.0"; sha256="0k0ybh8852yd9ybpsdyqrb5cdkcbw4rb61ixakq07j6i2j78ac1n"; depends=[convert graph limma marray]; }; - makecdfenv = derive2 { name="makecdfenv"; version="1.68.0"; sha256="0dm7dpix6baa1jwn2x7ilbf9c2hhli0cyy3bdfcdzjpwfvrvwb36"; depends=[affy affyio Biobase zlibbioc]; }; - mapscape = derive2 { name="mapscape"; version="1.16.0"; sha256="07m1mh1chkflcgillrbb54zkkk0827cm5w055dsb849r4ri5a0h8"; depends=[base64enc htmlwidgets jsonlite stringr]; }; - marr = derive2 { name="marr"; version="1.2.0"; sha256="00khqvb8fc1z8i2rb2vy1mxwzqyh0sc6c99yb1jqnbbdsmjsayqx"; depends=[dplyr ggplot2 magrittr Rcpp rlang S4Vectors SummarizedExperiment]; }; - marray = derive2 { name="marray"; version="1.70.0"; sha256="0wpmrhqpyv27h1hn31hzz21r74r7yqx79ljv8i8gn6ix8lf5ca56"; depends=[limma]; }; - martini = derive2 { name="martini"; version="1.12.0"; sha256="1zzpxbhwwla8cljla4pyj7fvj5qclb0q9y91fbhikqrf53as22xp"; depends=[igraph Matrix Rcpp RcppEigen snpStats]; }; - maser = derive2 { name="maser"; version="1.10.0"; sha256="1cbi8768blj5ccn9h5pinx5iwdmn0wh4mdgy5ayvqqb2ngxllhj8"; depends=[BiocGenerics data_table dplyr DT GenomeInfoDb GenomicRanges ggplot2 Gviz IRanges reshape2 rtracklayer]; }; - maskBAD = derive2 { name="maskBAD"; version="1.36.0"; sha256="0j3mdb7gr1352qs70x89yclrws65ld1mqbn4yzyhhcsryhwlaskk"; depends=[affy gcrma]; }; - massiR = derive2 { name="massiR"; version="1.28.0"; sha256="1azcmh8ryblyrp929j16lm2nw03s7lixa18d3srx4qwkhafmk1gm"; depends=[Biobase cluster diptest gplots]; }; - matchBox = derive2 { name="matchBox"; version="1.34.0"; sha256="0jsr5zcdmlq2wgq6wj8v84hb9l0q9lq49a9yvxpjq5fz4mjrbh42"; depends=[]; }; - matter = derive2 { name="matter"; version="1.18.0"; sha256="0g1xn8lrn0jw8mxqrmz9yarlp0b50z8hx25yrg6fmmqb5fklrl90"; depends=[biglm BiocGenerics BiocParallel digest irlba Matrix ProtGenerics]; }; - mbkmeans = derive2 { name="mbkmeans"; version="1.8.0"; sha256="1k7ngpx4s50jplrsv19zzjr7izpdl9wwppb218ih5cp0ki1gcc2n"; depends=[beachmat benchmarkme BiocParallel ClusterR DelayedArray Matrix Rcpp RcppArmadillo Rhdf5lib S4Vectors SingleCellExperiment SummarizedExperiment]; }; - mdp = derive2 { name="mdp"; version="1.12.0"; sha256="1z8f882by8izjql3qbgj9ixjiclcz315b44h6l2crlfqmi6rnrfl"; depends=[ggplot2 gridExtra]; }; - mdqc = derive2 { name="mdqc"; version="1.54.0"; sha256="1vihcpxa9azishzk91qk8fslan0xiq1mqm6r23r575czz7d7q7r3"; depends=[cluster MASS]; }; - megadepth = derive2 { name="megadepth"; version="1.2.3"; sha256="0grgj7bzyqnxby0sx5ic1h9bzmx19xwl0a5b3v6wbnwqcla2i3kg"; depends=[cmdfun dplyr fs GenomicRanges magrittr readr xfun]; }; - memes = derive2 { name="memes"; version="1.0.4"; sha256="1lq4yngb6530mqbk13ln4ddlj63dpsjnzj0rkbqynh1gnvsjm0m3"; depends=[Biostrings cmdfun dplyr GenomicRanges ggplot2 ggseqlogo magrittr matrixStats patchwork processx purrr readr rlang tibble tidyr universalmotif usethis xml2]; }; - meshes = derive2 { name="meshes"; version="1.18.1"; sha256="1i9p3nhwmx85c8b1i924nblb6cpw565mzavf0lsp17gnm3g5jy40"; depends=[AnnotationDbi DOSE enrichplot GOSemSim MeSH_db yulab_utils]; }; - meshr = derive2 { name="meshr"; version="1.28.0"; sha256="14jhjm00jrb5dfjqjhk2pxla0fr3dldj6271kkr8d1ccz3s00r6m"; depends=[BiocGenerics Category cummeRbund fdrtool MeSH_Aca_eg_db MeSH_AOR_db MeSH_Bsu_168_eg_db MeSH_db MeSH_Hsa_eg_db MeSH_PCR_db MeSH_Syn_eg_db MeSHDbi org_Hs_eg_db RSQLite S4Vectors]; }; - messina = derive2 { name="messina"; version="1.28.0"; sha256="03ak4njag62mi1ip6bhfj04hqqgn7q07sspsaxvbl28q6qsrnhdl"; depends=[foreach ggplot2 plyr Rcpp survival]; }; - metaCCA = derive2 { name="metaCCA"; version="1.20.0"; sha256="1di91vrrh6wh4ha57izdn2bv83id6r3f1x2i818dxznivfjlgs7m"; depends=[]; }; - metaMS = derive2 { name="metaMS"; version="1.28.0"; sha256="0parnww85bprwpfyi4k5zk036vdz64dn1wfd7p913i8srhsrjylr"; depends=[BiocGenerics CAMERA Matrix robustbase xcms]; }; - metaSeq = derive2 { name="metaSeq"; version="1.32.0"; sha256="1s8966lmyiamdba4a714zdafhhsxgx7xsrsbd4g24nq46m3kmval"; depends=[NOISeq Rcpp snow]; }; - metabCombiner = derive2 { name="metabCombiner"; version="1.2.2"; sha256="1zyn1sphm0p50b5ni9kaicgmglh6h1pgbvx608imjjijvx3lk0lm"; depends=[caret dplyr matrixStats mgcv rlang S4Vectors tidyr]; }; - metabolomicsWorkbenchR = derive2 { name="metabolomicsWorkbenchR"; version="1.2.0"; sha256="1pjmwg04wqkf0das9h9wzk8arb4vf81j7yhmg71kq5982nl4whqa"; depends=[data_table httr jsonlite MultiAssayExperiment struct SummarizedExperiment]; }; - metabomxtr = derive2 { name="metabomxtr"; version="1.26.0"; sha256="0bj18czq4p8a5flwg19q63fv6jv0llybxr82ipg7zl5vjdkj6siz"; depends=[Biobase BiocParallel Formula ggplot2 multtest optimx plyr]; }; - metagene = derive2 { name="metagene"; version="2.24.0"; sha256="07mhpizwq6shd38a3v1yb2kks68xh76ka68lprpfgk4mvnak8by9"; depends=[BiocParallel data_table EnsDb_Hsapiens_v86 ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gplots IRanges magrittr matrixStats muStat purrr R6 Rsamtools rtracklayer stringr]; }; - metagene2 = derive2 { name="metagene2"; version="1.8.1"; sha256="1w3fvscsjklp2imxmwnbzgw0vr9xgl64k0bc9ln9sk2zqkf47av0"; depends=[BiocParallel data_table dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges magrittr purrr R6 reshape2 Rsamtools rtracklayer]; }; - metagenomeSeq = derive2 { name="metagenomeSeq"; version="1.34.0"; sha256="08yxwy62aqynnrzb98p23zrh17gxvdj3jxzpd1shcssk3cakra37"; depends=[Biobase foreach glmnet gplots limma Matrix matrixStats RColorBrewer Wrench]; }; - metahdep = derive2 { name="metahdep"; version="1.50.0"; sha256="1p63rhhk8kj2qlzxyrww3wlz0ni4irq5mghh537z3hn9vbiw2njz"; depends=[]; }; - metapod = derive2 { name="metapod"; version="1.0.0"; sha256="1hbcwr6d8gyrf4azh0gi588xkrg6gz7gsb5hbvzqkhplbsp6shlv"; depends=[Rcpp]; }; - metaseqR2 = derive2 { name="metaseqR2"; version="1.4.0"; sha256="1dmycdkjzx7ipzsa7x2ddzlrm72kanf80n375b7ajmr0zhazks8w"; depends=[ABSSeq baySeq Biobase BiocGenerics BiocParallel biomaRt Biostrings corrplot DESeq2 DSS DT EDASeq edgeR genefilter GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gplots harmonicmeanp heatmaply htmltools httr IRanges jsonlite lattice limma locfit log4r magrittr MASS Matrix NBPSeq pander qvalue rmarkdown rmdformats Rsamtools RSQLite rtracklayer S4Vectors stringr SummarizedExperiment survcomp VennDiagram vsn yaml zoo]; }; - metavizr = derive2 { name="metavizr"; version="1.15.0"; sha256="16r5rnrk69qqy5w2ynpg3yx3h2cmrskvccg572v9k58g2n4gwkgs"; depends=[Biobase data_table digest epivizr epivizrData epivizrServer epivizrStandalone GenomeInfoDb httr metagenomeSeq phyloseq vegan]; }; - methInheritSim = derive2 { name="methInheritSim"; version="1.14.0"; sha256="0jjq98wgml432pshc2s9703aqhb2vg7jca28shhf73rjjcvss5jd"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges methylKit msm S4Vectors]; }; - methimpute = derive2 { name="methimpute"; version="1.14.0"; sha256="05br8cigmgvyvs36r8mzkhcxh9jwi14yd83v8z8w5y7yr9dyzaak"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges ggplot2 IRanges minpack_lm Rcpp reshape2]; }; - methrix = derive2 { name="methrix"; version="1.6.0"; sha256="0mbbmg4b7in3h3dw10wzygmzxb0avar7pxfzq0fifh0kmv6f9lsg"; depends=[BSgenome data_table DelayedArray DelayedMatrixStats GenomicRanges ggplot2 HDF5Array IRanges matrixStats rtracklayer SummarizedExperiment]; }; - methyAnalysis = derive2 { name="methyAnalysis"; version="1.34.0"; sha256="05k3n7iy5ijidbnblbqqas8dsj8drwzbhyrbs8wl1ypkg51havi0"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt genefilter GenomeInfoDb GenomicFeatures GenomicRanges Gviz IRanges lumi methylumi org_Hs_eg_db rtracklayer SummarizedExperiment VariantAnnotation]; }; - methylCC = derive2 { name="methylCC"; version="1.6.0"; sha256="1jvhyajn6jzs2aqsjjzgkvh1jpmddfx7kgawa2cm97fi8qqrrsvv"; depends=[Biobase bsseq bumphunter dplyr FlowSorted_Blood_450k genefilter GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IRanges magrittr minfi plyranges quadprog S4Vectors]; }; - methylGSA = derive2 { name="methylGSA"; version="1.10.0"; sha256="03na89dh1f8ykkbfrwxin1g12dlbx4b7zaxngqswbz3q2jc9h66f"; depends=[AnnotationDbi BiocParallel clusterProfiler ggplot2 GO_db IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 missMethyl org_Hs_eg_db reactome_db RobustRankAggreg shiny stringr]; }; - methylInheritance = derive2 { name="methylInheritance"; version="1.16.0"; sha256="0llc2rpkqkg75wjjfgk3xpb9fapxzk7f10d1x6yxl5a19ws6j7sa"; depends=[BiocParallel GenomicRanges ggplot2 gridExtra IRanges methylKit rebus S4Vectors]; }; - methylKit = derive2 { name="methylKit"; version="1.18.0"; sha256="147nag4rz2xpjkkf8rmhja9k4ixjj1hsb0lq3lw7mw6q67zxsvf3"; depends=[data_table emdbook fastseg GenomeInfoDb GenomicRanges gtools IRanges KernSmooth limma mclust mgcv qvalue R_utils Rcpp Rhtslib Rsamtools rtracklayer S4Vectors zlibbioc]; }; - methylMnM = derive2 { name="methylMnM"; version="1.30.0"; sha256="1av81b9s7dz7aa9g6pa13l5lyxn8frgb6shfq2if1sqsksfpmwmz"; depends=[edgeR statmod]; }; - methylPipe = derive2 { name="methylPipe"; version="1.26.0"; sha256="1q1bybxqal9ny04s71fwwyj29536glpcss5x7zbmj20kd1ll35dm"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicRanges gplots Gviz IRanges marray Rsamtools S4Vectors SummarizedExperiment]; }; - methylSig = derive2 { name="methylSig"; version="1.4.0"; sha256="1phkc09vxyydn0qqy0r5j31lxcym0rznjwdqd8sh1diy0w7g23bf"; depends=[bsseq DelayedArray DelayedMatrixStats DSS GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - methylscaper = derive2 { name="methylscaper"; version="1.0.1"; sha256="0ryasmnr3d75hl7iwwgkzf5an24jwds501y6zpx6nqdq3fs0k2a7"; depends=[BiocParallel Biostrings data_table Rfast seqinr seriation shiny shinyFiles shinyjs SummarizedExperiment]; }; - methylumi = derive2 { name="methylumi"; version="2.38.0"; sha256="1941rc524ssx8gwhmwk40mgfrhddfs6hgldvs7bi22r29gm4y7qj"; depends=[annotate AnnotationDbi Biobase BiocGenerics FDb_InfiniumMethylation_hg19 genefilter GenomeInfoDb GenomicRanges ggplot2 illuminaio IRanges lattice matrixStats minfi reshape2 S4Vectors scales SummarizedExperiment]; }; - mfa = derive2 { name="mfa"; version="1.14.0"; sha256="18z88rhps3a7fa5za5y76dxnk95sawgyi33wcsq4zpx000gc9a01"; depends=[Biobase coda dplyr ggmcmc ggplot2 magrittr MCMCglmm MCMCpack Rcpp tibble]; }; - mgsa = derive2 { name="mgsa"; version="1.40.0"; sha256="15qs1fkakkk904243ym03zin54y49d3x0hc1skj82ly5dydp30k2"; depends=[gplots]; }; - miQC = derive2 { name="miQC"; version="1.0.0"; sha256="1z4yplsszrj6qi60q9r7w9chir4k0k2vjac7ss8895in8zr4xd23"; depends=[BiocParallel flexmix ggplot2 SingleCellExperiment]; }; - miRBaseConverter = derive2 { name="miRBaseConverter"; version="1.16.0"; sha256="0lznnf33nmb5pvx8fyxn7krzr1a6a0wpca8w1jx2npgrl0jmfahp"; depends=[]; }; - miRLAB = derive2 { name="miRLAB"; version="1.22.0"; sha256="0qyc3hl31849jrjnbrk7vmks667qbf27kls8lbx72cdqhvhg9s0k"; depends=[Category ctc dplyr energy entropy glmnet GOstats gplots Hmisc httr impute InvariantCausalPrediction limma org_Hs_eg_db pcalg RCurl stringr SummarizedExperiment TCGAbiolinks]; }; - miRNAmeConverter = derive2 { name="miRNAmeConverter"; version="1.20.0"; sha256="094jndkrkqv35xw669hymf0rfqf4b4y6pmwg3japd9qlz4gvgjwn"; depends=[AnnotationDbi DBI miRBaseVersions_db reshape2]; }; - miRNApath = derive2 { name="miRNApath"; version="1.52.0"; sha256="05ba7zrp6dkkgs7n3siy0hqaz1byp31q390vvxwa0wd2vbbhs0ks"; depends=[]; }; - miRNAtap = derive2 { name="miRNAtap"; version="1.26.0"; sha256="02mr56p22f5zy8d4bcy56h1995p2nq5w50n5yahb8fvkmjkw4d4c"; depends=[AnnotationDbi DBI plyr RSQLite sqldf stringr]; }; - miRSM = derive2 { name="miRSM"; version="1.10.0"; sha256="15bfss4dchdw21r2z5a9frfy579vmqndsmf4mx5cqhlk4j658rjx"; depends=[BiBitR BicARE biclust Biobase dbscan dynamicTreeCut energy fabia flashClust GFA GSEABase iBBiG igraph isa2 linkcomm MatrixCorrelation MCL mclust miRspongeR NMF org_Hs_eg_db PMA ppclust Rcpp rqubic s4vd SOMbrero subspace SummarizedExperiment WGCNA]; }; - miRcomp = derive2 { name="miRcomp"; version="1.22.0"; sha256="0118l8qwr9v7ip2lhi6icijinqfrbays8d9q5rxaykdzyvs8q3ld"; depends=[Biobase KernSmooth miRcompData]; }; - miRmine = derive2 { name="miRmine"; version="1.14.0"; sha256="0h9v7gfn9m9bw0bjw7wvydq44sx97pr1zc089fvskmdnkwb4dxjw"; depends=[SummarizedExperiment]; }; - miRspongeR = derive2 { name="miRspongeR"; version="1.18.0"; sha256="1gl7y3rn3kajmbj5ql81mbrdr5lc7ml1ihafaialdvr9r9n4gx7z"; depends=[clusterProfiler corpcor DOSE igraph linkcomm MCL org_Hs_eg_db Rcpp ReactomePA survival varhandle]; }; - mia = derive2 { name="mia"; version="1.0.8"; sha256="0dkzz9ys1cvqfwj4f2gjd72pmj4nzm7nhjl5qhmgg4i7mblp3wwk"; depends=[ape BiocGenerics BiocParallel Biostrings DECIPHER decontam DelayedArray DelayedMatrixStats DirichletMultinomial dplyr IRanges MASS rlang S4Vectors scater scuttle SingleCellExperiment SummarizedExperiment tibble tidyr TreeSummarizedExperiment vegan]; }; - miaViz = derive2 { name="miaViz"; version="1.0.1"; sha256="0awwqmddjb23x3ydanw8q57j1995zw0zvs8cj459gwlqsmdi6bin"; depends=[ape BiocGenerics BiocParallel DelayedArray DirichletMultinomial dplyr ggnewscale ggplot2 ggraph ggtree mia purrr rlang S4Vectors scater SummarizedExperiment tibble tidygraph tidyr tidytree TreeSummarizedExperiment viridis]; }; - microRNA = derive2 { name="microRNA"; version="1.50.0"; sha256="1w9rp9n415jv1nxc9iac38zy7nfshxrclxqb3364xyj2ww1krik6"; depends=[Biostrings]; }; - microbiome = derive2 { name="microbiome"; version="1.14.0"; sha256="1ay491rvwmjj6gq9c5ic65v9hfakz8kkqhibb2c1nwvccxyl5ai2"; depends=[dplyr ggplot2 phyloseq reshape2 Rtsne scales tibble tidyr vegan]; }; - microbiomeDASim = derive2 { name="microbiomeDASim"; version="1.6.0"; sha256="17jxqlppwf6z0028nsmsqib0xw1jzp34pjp51ijq3yw19krid20i"; depends=[Biobase ggplot2 MASS Matrix metagenomeSeq mvtnorm pbapply phyloseq tmvtnorm]; }; - microbiomeExplorer = derive2 { name="microbiomeExplorer"; version="1.2.0"; sha256="0f0mn4mb4x0s005f457v1d4fz8b0f0zvkzjy39mcc43jalm8nmw6"; depends=[Biobase biomformat broom car DESeq2 dplyr DT forcats heatmaply knitr limma lubridate magrittr matrixStats metagenomeSeq plotly purrr RColorBrewer readr reshape2 rlang rmarkdown shiny shinycssloaders shinydashboard shinyjs shinyWidgets stringr tibble tidyr vegan]; }; - midasHLA = derive2 { name="midasHLA"; version="1.0.0"; sha256="10zj510qbdrw449a5dkn5v26qfah58hd7y0cxcadkmn8kfq6y2ys"; depends=[assertthat broom dplyr formattable HardyWeinberg kableExtra knitr magrittr MultiAssayExperiment qdapTools rlang S4Vectors stringi SummarizedExperiment tibble]; }; - miloR = derive2 { name="miloR"; version="1.0.0"; sha256="1vll9zjbw1y9zd2qii0czrksdxggz5q45y958ih372dy5qwxlzki"; depends=[BiocNeighbors BiocParallel BiocSingular cowplot dplyr edgeR ggbeeswarm ggplot2 ggraph ggrepel gtools igraph irlba limma Matrix matrixStats patchwork RColorBrewer S4Vectors SingleCellExperiment stringr SummarizedExperiment tibble tidyr]; }; - mimager = derive2 { name="mimager"; version="1.16.0"; sha256="0s0vwspbh7dslads2k0px6iij7fmhwz09j52p0nd942xlkan635a"; depends=[affy affyPLM Biobase BiocGenerics DBI gtable oligo oligoClasses preprocessCore S4Vectors scales]; }; - mina = derive2 { name="mina"; version="1.0.0"; sha256="0skaldzwp1qxhn6sbhy07672ha6ih1kwrbaxwvn9ln369c24znbn"; depends=[apcluster biganalytics bigmemory foreach ggplot2 Hmisc MCL parallelDist plyr Rcpp RcppArmadillo RcppParallel reshape2 RSpectra stringr]; }; - minet = derive2 { name="minet"; version="3.50.0"; sha256="0bir2zr4r2wawkdvdhrk2hcyxmgkrkfvx36jj85fcm24axlqrzzb"; depends=[infotheo]; }; - minfi = derive2 { name="minfi"; version="1.38.0"; sha256="189lzppvrz6bw2kpppawgsfjyh2ahyy8bi9z8srpas67qf2r8jmj"; depends=[beanplot Biobase BiocGenerics BiocParallel Biostrings bumphunter data_table DelayedArray DelayedMatrixStats genefilter GenomeInfoDb GenomicRanges GEOquery HDF5Array illuminaio IRanges lattice limma MASS mclust nlme nor1mix preprocessCore quadprog RColorBrewer reshape S4Vectors siggenes SummarizedExperiment]; }; - mirIntegrator = derive2 { name="mirIntegrator"; version="1.22.0"; sha256="0k03nda56ldabizxkl0hcmh77ri4y6h4av1rq0v0zkq00wj89rr2"; depends=[AnnotationDbi ggplot2 graph org_Hs_eg_db Rgraphviz ROntoTools]; }; - mirTarRnaSeq = derive2 { name="mirTarRnaSeq"; version="1.0.0"; sha256="0z4gm7q362kprdxxk41qva5ir33m9ddf190jra9jc2c2dh5ambxl"; depends=[assertthat caTools corrplot data_table dplyr MASS pheatmap pscl purrr R_utils reshape2]; }; - missMethyl = derive2 { name="missMethyl"; version="1.26.1"; sha256="1hmym59jpsr02l4324b7h82cmfr2q4m877r4vf3svf95r9rhavs4"; depends=[AnnotationDbi BiasedUrn Biobase BiocGenerics GenomicRanges GO_db IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b4_hg19 IlluminaHumanMethylationEPICmanifest IRanges limma methylumi minfi org_Hs_eg_db ruv S4Vectors statmod stringr SummarizedExperiment]; }; - missRows = derive2 { name="missRows"; version="1.12.0"; sha256="168i6pmgpy50pp85nf5h042llxggcnbx042hzc14hp4pr87qxshm"; depends=[ggplot2 gtools MultiAssayExperiment plyr S4Vectors]; }; - mistyR = derive2 { name="mistyR"; version="1.0.3"; sha256="0sidwpby8m3dahwzidbvskm0ghgw8c5kn60940m18x55pcdkh167"; depends=[assertthat caret deldir digest distances dplyr filelock furrr ggplot2 MASS purrr R_utils ranger readr rlang rlist stringr tibble tidyr withr]; }; - mitch = derive2 { name="mitch"; version="1.4.1"; sha256="1vwgd5pmvfwlwi0y4030h1ds4gchaw34d9afmskmr78jayrjd5cs"; depends=[beeswarm echarts4r GGally ggplot2 gplots gridExtra knitr MASS plyr reshape2 rmarkdown]; }; - mixOmics = derive2 { name="mixOmics"; version="6.16.3"; sha256="1x6dbw4q6p9vngm256fr96r9fjxk5nik5ivkhbl5a9zqyq8wagpa"; depends=[BiocParallel corpcor dplyr ellipse ggplot2 ggrepel gridExtra igraph lattice MASS matrixStats rARPACK RColorBrewer reshape2 tidyr]; }; - mnem = derive2 { name="mnem"; version="1.8.0"; sha256="1knd28wps5rzr1m5fs7przjk3dv0v9sqcx9nw819zlchkl8xhfqc"; depends=[cluster data_table e1071 flexclust ggplot2 graph lattice Linnorm matrixStats naturalsort Rcpp RcppEigen Rgraphviz snowfall tsne wesanderson]; }; - moanin = derive2 { name="moanin"; version="1.0.0"; sha256="1ps420hgcrqvn0xbcb49h52af07mz0hr5ix5q12fdkvgyhrqa7s9"; depends=[ClusterR edgeR limma MASS matrixStats NMI reshape2 S4Vectors SummarizedExperiment topGO viridis zoo]; }; - mogsa = derive2 { name="mogsa"; version="1.26.0"; sha256="197s2kc1dd2y33w32w4pvhwav37mmgn6rvin4r2l0xy98mvjzkj5"; depends=[Biobase BiocGenerics cluster corpcor genefilter gplots graphite GSEABase svd]; }; - monocle = derive2 { name="monocle"; version="2.20.0"; sha256="05j1vc51f39xalggdq27y7218gkr3zq7fh7jhzsb4jj7fpn837ry"; depends=[Biobase BiocGenerics biocViews cluster combinat DDRTree densityClust dplyr fastICA ggplot2 HSMMSingleCell igraph irlba limma MASS Matrix matrixStats pheatmap plyr proxy qlcMatrix RANN Rcpp reshape2 Rtsne slam stringr tibble VGAM viridis]; }; - mosaics = derive2 { name="mosaics"; version="2.30.0"; sha256="14jdgiy8wi5psglsq0z6svkn7r3dn5sil5prs2w32csl3w14g7c5"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges lattice MASS Rcpp Rsamtools S4Vectors]; }; - motifStack = derive2 { name="motifStack"; version="1.36.1"; sha256="140xclzgn5z64v5nm4kvj0qwvqb7ix91bbmimsfc6k1p0l8lwsvv"; depends=[ade4 Biostrings ggplot2 htmlwidgets XML]; }; - motifbreakR = derive2 { name="motifbreakR"; version="2.6.1"; sha256="1n6v8a7c27aswmbrlcwcpghf27aplkc6nn923imglc3c0sh2lkrz"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges grImport Gviz IRanges matrixStats MotifDb motifStack rtracklayer S4Vectors stringr SummarizedExperiment TFMPvalue VariantAnnotation]; }; - motifcounter = derive2 { name="motifcounter"; version="1.16.0"; sha256="1w2d68iaibz1gh0f1mlqb4grwv1i89v0vn11050w5pbqv2jbz9vr"; depends=[Biostrings]; }; - motifmatchr = derive2 { name="motifmatchr"; version="1.14.0"; sha256="1vif3dp4lv4jz1pxsq0ig791ir8q65jmrlqmkyfxpfxfj5alqnbm"; depends=[Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp RcppArmadillo Rsamtools S4Vectors SummarizedExperiment TFBSTools]; }; - mpra = derive2 { name="mpra"; version="1.14.0"; sha256="19yyyswj82y1mgr4w62aai9v67p37waml8v42609r599bkch9k7r"; depends=[BiocGenerics limma S4Vectors scales statmod SummarizedExperiment]; }; - msImpute = derive2 { name="msImpute"; version="1.2.0"; sha256="1lz8qf48jmy5ihmfhl7vacrdwlzmpsp9sj6mavi0smv0kljgnlyd"; depends=[data_table FNN limma matrixStats mvtnorm pdist rdetools reticulate scran softImpute]; }; - msPurity = derive2 { name="msPurity"; version="1.18.0"; sha256="0zfha7x046bg2y1py8x99i826vyim01aapsnr4zr9i4qajj0cv1n"; depends=[DBI dbplyr doSNOW dplyr fastcluster foreach ggplot2 jsonlite magrittr mzR plyr Rcpp reshape2 RSQLite stringr uuid]; }; - msa = derive2 { name="msa"; version="1.24.0"; sha256="0gndkq0v4v1kg1s3v6m4n4l1kvll7hl7k103qyamic9ylh83q03j"; depends=[BiocGenerics Biostrings IRanges Rcpp S4Vectors]; }; - msgbsR = derive2 { name="msgbsR"; version="1.16.0"; sha256="129i8bvkdrqppli57di4a33xwxw4grlg23sii00w1b359f0w49mi"; depends=[BSgenome easyRNASeq edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr R_utils Rsamtools S4Vectors SummarizedExperiment]; }; - msmsEDA = derive2 { name="msmsEDA"; version="1.30.0"; sha256="0555a3riyp781mlffmnf93igfq8vl8wjk51pa9qb48qkdn6y8pfc"; depends=[gplots MASS MSnbase RColorBrewer]; }; - msmsTests = derive2 { name="msmsTests"; version="1.30.0"; sha256="11vhy1l6za73dpdj85q4ksaghgd8vb2h8v9iirmsn2vpajqrvgjh"; depends=[edgeR msmsEDA MSnbase qvalue]; }; - msqrob2 = derive2 { name="msqrob2"; version="1.0.0"; sha256="1gahb7v4rmm1q4qs8z8ygz7xia76cwjim6j2wvy0dfm0ffk8ypbk"; depends=[BiocParallel codetools limma lme4 MASS Matrix purrr QFeatures SummarizedExperiment]; }; - multiClust = derive2 { name="multiClust"; version="1.22.0"; sha256="1hck6jgqapq4ik8lhpaypvm2zzlygpgydn0qg78iyz5b40imhrg4"; depends=[amap cluster ctc dendextend mclust survival]; }; - multiGSEA = derive2 { name="multiGSEA"; version="1.2.0"; sha256="12dwhcsbhx8rp79q5jb0bykfys6mglccygdhj7yd91fhvb0vgins"; depends=[AnnotationDbi dplyr fgsea graphite magrittr metap rappdirs rlang]; }; - multiHiCcompare = derive2 { name="multiHiCcompare"; version="1.10.0"; sha256="1rfs1gg34lb4qz0jdxailhd3swm8r1vyjdjsilw4hr5qlm3srhnh"; depends=[aggregation BiocParallel data_table dplyr edgeR GenomeInfoDb GenomeInfoDbData GenomicRanges HiCcompare pbapply pheatmap qqman]; }; - multiMiR = derive2 { name="multiMiR"; version="1.14.0"; sha256="1chgs9yk64r4wsyvg93c87cl9ja94x8d7cxlgr5026bslk5p42wy"; depends=[AnnotationDbi BiocGenerics dplyr purrr RCurl tibble XML]; }; - multiOmicsViz = derive2 { name="multiOmicsViz"; version="1.16.0"; sha256="0kpmnlb35zjc4b9wb1711hmgwcizah9y7pl569zwil4pcyxhspia"; depends=[doParallel foreach SummarizedExperiment]; }; - multiSight = derive2 { name="multiSight"; version="1.0.0"; sha256="1mxpvzzw2nx2hs9vkw39d5psxk53gg1hwkniq93yzqz78239c168"; depends=[anyLib biosigner caret clusterProfiler config DESeq2 dplyr DT easyPubMed enrichplot golem htmltools igraph infotheo metap mixOmics networkD3 ppcor R6 ReactomePA rmarkdown rWikiPathways shiny shinydashboard stringr]; }; - multicrispr = derive2 { name="multicrispr"; version="1.2.0"; sha256="0qqrb5bq7vllqpi3z7bq3w2lfhgarr68axiq3mhk8y02ypqwlb21"; depends=[assertive BiocGenerics Biostrings BSgenome CRISPRseek data_table GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 karyoploteR magrittr plyranges Rbowtie reticulate rtracklayer stringi tidyr tidyselect]; }; - multiscan = derive2 { name="multiscan"; version="1.52.0"; sha256="0wz05cfngms6891gzl8vqpf8fi7m0zvk0cjn849721dy54w5gffs"; depends=[Biobase]; }; - multtest = derive2 { name="multtest"; version="2.48.0"; sha256="1wi15v4llgv11hpb2j9h4a35nrnawnmvbz5d5dvgy8lhqrlq8w9a"; depends=[Biobase BiocGenerics MASS survival]; }; - mumosa = derive2 { name="mumosa"; version="1.0.0"; sha256="1wrc13jsiabc9yl9vv1f1q3pwg5a70z6382rqvyzj0jm2sal9766"; depends=[batchelor beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats igraph IRanges Matrix metapod S4Vectors ScaledMatrix scran scuttle SingleCellExperiment SummarizedExperiment uwot]; }; - muscat = derive2 { name="muscat"; version="1.6.0"; sha256="0gm7nq2hx05d70gjaa3pa5fvm054i6fbz92p6icv0fn22jyqhv2q"; depends=[BiocParallel blme ComplexHeatmap data_table DESeq2 dplyr edgeR ggplot2 glmmTMB limma lme4 lmerTest Matrix matrixStats progress purrr S4Vectors scales scater sctransform scuttle SingleCellExperiment SummarizedExperiment variancePartition viridis]; }; - muscle = derive2 { name="muscle"; version="3.34.0"; sha256="01zlbglsag870pb71dzrzqra4l0wrqsi7yvbl1dq2rpla2y1wx5k"; depends=[Biostrings]; }; - musicatk = derive2 { name="musicatk"; version="1.2.0"; sha256="0mb7svg4ir8z1qdigzgxg5n5nhnacg7vvkvgv98av7af9vgc0zxl"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 BSgenome_Mmusculus_UCSC_mm9 cluster ComplexHeatmap cowplot data_table decompTumor2Sig deconstructSigs dplyr factoextra GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel gridExtra gtools IRanges maftools magrittr MASS matrixTests MCMCprecision NMF philentropy plotly rlang S4Vectors stringi stringr SummarizedExperiment tibble tidyr topicmodels TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene uwot VariantAnnotation withr]; }; - mygene = derive2 { name="mygene"; version="1.28.0"; sha256="0agg6klx9qdpphdwxhmnywb9p010l680rym7h3cgkwxhfjpf0c6d"; depends=[GenomicFeatures Hmisc httr jsonlite plyr S4Vectors sqldf]; }; - myvariant = derive2 { name="myvariant"; version="1.22.0"; sha256="07c6qszvm5ppgpcbjqbznwv1nw8x2d30cpxlzkcawhp0yi4prwj7"; depends=[GenomeInfoDb Hmisc httr jsonlite magrittr plyr S4Vectors VariantAnnotation]; }; - mzID = derive2 { name="mzID"; version="1.30.0"; sha256="1wsy6frxa5602jqb1nlqv39mzgpid8wfyvb9m2jb6srv7p59rgys"; depends=[doParallel foreach iterators plyr ProtGenerics XML]; }; - mzR = derive2 { name="mzR"; version="2.26.1"; sha256="0z4cz6lir9gwzy0hxwv03wv36fkkfdb97p9wv4af020k0zkp3ipr"; depends=[Biobase BiocGenerics ncdf4 ProtGenerics Rcpp Rhdf5lib zlibbioc]; }; - nanotatoR = derive2 { name="nanotatoR"; version="1.8.0"; sha256="0jl1kgs45rmlb27avgly723askkklfdvi4z29hrp3lgavk7j6nc4"; depends=[AnnotationDbi hash httr knitr openxlsx org_Hs_eg_db rentrez rtracklayer stringr testthat]; }; - ncGTW = derive2 { name="ncGTW"; version="1.6.0"; sha256="0pn2250acf3hqh7wddw6zjdfmjz0lcfsqlc9sl90vpqbjsbwxl8v"; depends=[BiocParallel Rcpp xcms]; }; - ncRNAtools = derive2 { name="ncRNAtools"; version="1.2.1"; sha256="1y60xlf66fchbydrbi5yaxc2hgjin7av1b1s8p964n0wr5xkl35w"; depends=[GenomicRanges ggplot2 httr IRanges S4Vectors xml2]; }; - ncdfFlow = derive2 { name="ncdfFlow"; version="2.38.0"; sha256="1lm88qnfv6rnnr7wmgbvwyj272imjjjn7h3agxqqzsbmn8vyrnf0"; depends=[BH Biobase BiocGenerics flowCore Rcpp RcppArmadillo Rhdf5lib zlibbioc]; }; - ndexr = derive2 { name="ndexr"; version="1.14.1"; sha256="0z3dmfv3rk0pyhh1kpgggfyy7i2gpv9rmvz5hfqq3rzh2gfnhfll"; depends=[httr igraph jsonlite plyr tidyr]; }; - nearBynding = derive2 { name="nearBynding"; version="1.2.0"; sha256="0ggpirbfb4qzj5bhys1jl4a8z7p4k0b8q76mggh7bizadahpikfm"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicRanges ggplot2 gplots magrittr matrixStats plyranges R_utils rlang Rsamtools rtracklayer S4Vectors transport TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; - nempi = derive2 { name="nempi"; version="1.0.0"; sha256="1sq5ylfnk8lga0pxmfa5mxxy2l9xijm6yawinqf94g3sw5hy7g80"; depends=[e1071 epiNEM matrixStats mnem naturalsort nnet randomForest]; }; - netDx = derive2 { name="netDx"; version="1.4.3"; sha256="09c6gqc4w8j9zsysm5ddq29798fgj7544n9n9sys7vyrz3nlq22k"; depends=[bigmemory BiocFileCache clusterExperiment combinat doParallel foreach GenomeInfoDb GenomicRanges ggplot2 glmnet httr igraph IRanges MultiAssayExperiment netSmooth pracma rappdirs RColorBrewer RCy3 reshape2 ROCR Rtsne S4Vectors scater]; }; - netSmooth = derive2 { name="netSmooth"; version="1.12.0"; sha256="1zlsl81jbi0jcfb7xxvffvp9sndj42k81yc5nsrrz2sjrd666r7q"; depends=[cluster clusterExperiment data_table DelayedArray entropy HDF5Array Matrix scater SingleCellExperiment SummarizedExperiment]; }; - netbiov = derive2 { name="netbiov"; version="1.26.0"; sha256="015vckpkm79qiaph9r1hi4fy9c2fmvg9a7ahckn8bhq0y23614xm"; depends=[igraph]; }; - netboost = derive2 { name="netboost"; version="2.0.0"; sha256="1m5sqydfy8rify51ggrzvx007n569a99sfik3f66hvii3kz09w9j"; depends=[colorspace dynamicTreeCut impute R_utils Rcpp RcppParallel WGCNA]; }; - netboxr = derive2 { name="netboxr"; version="1.4.0"; sha256="0pfw3bil0acjclpff6k3fz2xfc2myjzal8b78pab7dnng19a4n6p"; depends=[clusterProfiler data_table DT gplots igraph jsonlite plyr RColorBrewer]; }; - nethet = derive2 { name="nethet"; version="1.24.0"; sha256="1cr28n11gy5ns3alm3gmlxvy4v7bsiw7gvywdhf7y5xb4lfmrscv"; depends=[CompQuadForm GeneNet ggm ggplot2 glasso glmnet GSA huge ICSNP limma mclust multtest mvtnorm network]; }; - netprioR = derive2 { name="netprioR"; version="1.18.0"; sha256="0jfp85v0axv6wvl19hxxgmy4hcvjcb0qsb1lxa2zj3wvhngn7c28"; depends=[doParallel dplyr foreach ggplot2 gridExtra Matrix pROC sparseMVN]; }; - netresponse = derive2 { name="netresponse"; version="1.52.0"; sha256="1lfcandarcklw4x99f1xfcyyg58c19avanq2837r8n6x5dd77xaz"; depends=[dmt ggplot2 graph igraph mclust minet plyr qvalue RColorBrewer reshape2 Rgraphviz]; }; - networkBMA = derive2 { name="networkBMA"; version="2.32.0"; sha256="1990ay4yjbkbwi9khwhipirbj4qi2sqybbakj9jl89j7qng8rbs4"; depends=[BH BMA leaps Rcpp RcppArmadillo RcppEigen]; }; - ngsReports = derive2 { name="ngsReports"; version="1.8.1"; sha256="1j8fx5jf9mj768xizsnrs0wf9sc13i2rvg3shfvy36sqdamna7l8"; depends=[BiocGenerics Biostrings checkmate dplyr DT forcats ggdendro ggplot2 lifecycle lubridate pander plotly readr reshape2 rmarkdown scales stringr tibble tidyr tidyselect zoo]; }; - nnNorm = derive2 { name="nnNorm"; version="2.56.0"; sha256="0addah6zljlpimcj7a2m6sv8c91q9rrr8x6j103fsvqrdbpkr5m7"; depends=[marray nnet]; }; - nondetects = derive2 { name="nondetects"; version="2.22.0"; sha256="1kc7km6ac1ygfbna2y8l05h1067i580hc3ra1n09ca34yx6s9kh0"; depends=[arm Biobase HTqPCR limma mvtnorm]; }; - normalize450K = derive2 { name="normalize450K"; version="1.20.0"; sha256="1dpzmiln6fs68kk4pmdd5z8090m3vgd96xhcy2jwr5b2aw4wqwva"; depends=[Biobase illuminaio quadprog]; }; - normr = derive2 { name="normr"; version="1.18.1"; sha256="1pcrqhby614rfs3ag148msg9qkj0zrm0dx2p5mka46s9zydxjily"; depends=[bamsignals GenomeInfoDb GenomicRanges IRanges qvalue Rcpp rtracklayer]; }; - npGSEA = derive2 { name="npGSEA"; version="1.28.0"; sha256="0ww8i0gjajsipg7h9bdpjsmlk12x980fmkgls0rq5ba6g97mqnnl"; depends=[Biobase BiocGenerics GSEABase]; }; - nuCpos = derive2 { name="nuCpos"; version="1.10.0"; sha256="02nzzrisd7xybj54261mklpbibnsfhkw0752vc6qzrr05i1a788w"; depends=[]; }; - nucleR = derive2 { name="nucleR"; version="2.24.0"; sha256="010mkqvs9l7ykgrq28wal2p11h51lrfsf1jf27pbx34wb2xsvcf4"; depends=[Biobase BiocGenerics Biostrings dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges magrittr Rsamtools S4Vectors ShortRead]; }; - nucleoSim = derive2 { name="nucleoSim"; version="1.20.0"; sha256="1q5wrrm1aav8abvz45jwv8z6jfyx5y8zzxfzp4ys36b8mdn93fp0"; depends=[IRanges S4Vectors]; }; - occugene = derive2 { name="occugene"; version="1.52.0"; sha256="19gqkghgb7jscdmb15yl422mln3agjg3xa9371y8d9z9xqcj1rr7"; depends=[]; }; - odseq = derive2 { name="odseq"; version="1.20.0"; sha256="01g0j07fkr6p3zqlz10mavs63z0d16rcg3qnvnrs8wykpkc34s23"; depends=[kebabs mclust msa]; }; - oligo = derive2 { name="oligo"; version="1.56.0"; sha256="0fyq77im6s79havjwbchhqhnllxs134jsi98g6msxz66h16lj3al"; depends=[affxparser affyio Biobase BiocGenerics Biostrings DBI ff oligoClasses preprocessCore RSQLite zlibbioc]; }; - oligoClasses = derive2 { name="oligoClasses"; version="1.54.0"; sha256="1nsfyfpj264h6y322pzz0i001b0m862j3skbq5rjwlrj1p8j2gi7"; depends=[affyio Biobase BiocGenerics BiocManager Biostrings DBI ff foreach GenomicRanges IRanges RSQLite S4Vectors SummarizedExperiment]; }; - omicRexposome = derive2 { name="omicRexposome"; version="1.14.0"; sha256="15qqn0vm302sqb91l1kzm9isyz0cz1d94fhlnf29pjgpr3vappma"; depends=[Biobase ggplot2 ggrepel gridExtra isva limma MultiDataSet omicade4 PMA rexposome SmartSVA stringr SummarizedExperiment sva]; }; - omicade4 = derive2 { name="omicade4"; version="1.32.0"; sha256="0qmiw6wic67fdx6p3f4am4z04yrvsy2jb7wsx3m2s6gg1nhaw4a7"; depends=[ade4 Biobase made4]; }; - omicplotR = derive2 { name="omicplotR"; version="1.12.0"; sha256="1iybnpdxbncvqkqlqlw12l3mxvn3j6pcw9da265zsxnc6ql6v5bx"; depends=[ALDEx2 compositions DT jsonlite knitr matrixStats rmarkdown shiny vegan zCompositions]; }; - omicsPrint = derive2 { name="omicsPrint"; version="1.12.0"; sha256="071m4mq6ilm3k261qyk306gzhyaysxcw857z7pndgbqn697d1zcr"; depends=[MASS matrixStats MultiAssayExperiment RaggedExperiment SummarizedExperiment]; }; - oncomix = derive2 { name="oncomix"; version="1.14.0"; sha256="1bzz408jym0j5v6yikzbm2ywddb57k6yqfdrnd2yzqhadsyfqs04"; depends=[ggplot2 ggrepel mclust RColorBrewer SummarizedExperiment]; }; - oneSENSE = derive2 { name="oneSENSE"; version="1.14.0"; sha256="1by42sxpbyysk30f9pypqm6ibn9rbcxj8y92ld5ammcwkmvq20f5"; depends=[flowCore gplots plotly Rtsne scatterplot3d shiny shinyFiles webshot]; }; - onlineFDR = derive2 { name="onlineFDR"; version="2.0.0"; sha256="0pinq57b69lbk44jk2vx53j8662bg2zpb1d47iji6qca8rx6xg9h"; depends=[dplyr ggplot2 progress Rcpp RcppProgress tidyr]; }; - ontoProc = derive2 { name="ontoProc"; version="1.14.0"; sha256="1v6pmp518r6xjid8h9zq0lz8b62s5gjvndc0n4vpn1phlvqiifpp"; depends=[AnnotationDbi Biobase BiocFileCache dplyr DT graph igraph magrittr ontologyIndex ontologyPlot Rgraphviz S4Vectors shiny]; }; - openCyto = derive2 { name="openCyto"; version="2.4.0"; sha256="1par1d5pk1rjg15q7i5z5wqma7xg6fycb826a823wk8wr52a885x"; depends=[Biobase BiocGenerics clue data_table flowClust flowCore flowStats flowViz flowWorkspace graph gtools ks lattice MASS ncdfFlow plyr R_utils RBGL RColorBrewer Rcpp rrcov]; }; - openPrimeR = derive2 { name="openPrimeR"; version="1.14.0"; sha256="0z56bln90fcdqmf3f1mmkj7d12d72jx3287ipx6bdc34728rxnk6"; depends=[ape BiocGenerics Biostrings DECIPHER digest distr distrEx dplyr fitdistrplus foreach GenomicRanges ggplot2 Hmisc IRanges lpSolveAPI magrittr openxlsx plyr RColorBrewer reshape2 S4Vectors scales seqinr stringdist stringr uniqtag XML]; }; - openPrimeRui = derive2 { name="openPrimeRui"; version="1.14.0"; sha256="1q7rm4w1vv84jigwighinb7jwdrsn7m7pifra35mg98c22pmagvk"; depends=[DT openPrimeR rmarkdown shiny shinyBS shinyjs]; }; - oposSOM = derive2 { name="oposSOM"; version="2.10.0"; sha256="0d8kxyfvy45c6xihh7rzwyc0kgdkb7lwxdl252p3gyzh3bl4548p"; depends=[ape Biobase biomaRt fastICA fdrtool graph igraph pixmap png Rcpp RcppParallel RCurl scatterplot3d tsne XML]; }; - oppar = derive2 { name="oppar"; version="1.20.0"; sha256="1pzxhl6hibv3z2ws0sk71n60d6sfsl71jxii5ajfrx6zli7kr7av"; depends=[Biobase GSEABase GSVA]; }; - oppti = derive2 { name="oppti"; version="1.6.0"; sha256="1rqnvrq2zkizb8vkkpaliy228s7dhznx4qppfsljhl958h8gkich"; depends=[devtools ggplot2 knitr limma pheatmap RColorBrewer reshape]; }; - optimalFlow = derive2 { name="optimalFlow"; version="1.4.0"; sha256="0xjkikyz81dx2n2lx1n0wqwssnk7hiwnd3djhq8f5aaskgim8cq5"; depends=[dbscan doParallel dplyr ellipse flowMeans foreach optimalFlowData randomForest Rfast rgl rlang robustbase transport]; }; - pRoloc = derive2 { name="pRoloc"; version="1.32.0"; sha256="096x6kgzpbx4xylb330ryiwbh0r347cbv732f5my97g9m3bb2n5p"; depends=[Biobase BiocGenerics BiocParallel biomaRt caret class coda dendextend e1071 FNN ggplot2 gtools hexbin kernlab knitr LaplacesDemon lattice MASS mclust mixtools MLInterfaces MSnbase mvtnorm nnet plyr proxy randomForest RColorBrewer Rcpp RcppArmadillo sampling scales]; }; - pRolocGUI = derive2 { name="pRolocGUI"; version="2.2.0"; sha256="0gwgiv91b9rpwiwibhrb1p4bv4qx45jb2xy2mlhlw050z719wc5n"; depends=[Biobase BiocGenerics colorspace colourpicker dplyr DT ggplot2 MSnbase pRoloc scales shiny shinydashboard shinydashboardPlus shinyhelper shinyjs shinyWidgets]; }; - packFinder = derive2 { name="packFinder"; version="1.4.0"; sha256="12ad2wdk2hmwrb6qsqfp6mqfkkc970d9g0jz5bx47g43fdfasc5f"; depends=[ape Biostrings GenomicRanges IRanges kmer S4Vectors]; }; - padma = derive2 { name="padma"; version="1.2.0"; sha256="15h32pf87ml4rdr6ywbdnb55g7i0ikznvxjlnavpqzx06zdhbpfc"; depends=[FactoMineR MultiAssayExperiment S4Vectors SummarizedExperiment]; }; - pageRank = derive2 { name="pageRank"; version="1.2.0"; sha256="0493w9kanvivhi1r58gyqs5gmc0vz5rvd7hjj4wvrl16ji2pnjsz"; depends=[GenomicRanges igraph motifmatchr]; }; - paircompviz = derive2 { name="paircompviz"; version="1.30.0"; sha256="04v9s3nvcafc2m921sn1s276ng6gs8j7axa9alyxkswgcqcad1c1"; depends=[Rgraphviz]; }; - pandaR = derive2 { name="pandaR"; version="1.24.0"; sha256="1ps1lq14hkpp5p8fwcpz1vqsznrrnlbzn7y4fv7ccymzsk679ijj"; depends=[Biobase BiocGenerics ggplot2 hexbin igraph matrixStats plyr reshape RUnit]; }; - panelcn_mops = derive2 { name="panelcn.mops"; version="1.14.0"; sha256="16whxkrvd0xkdiw4pf0azvglxnpwlwqwh3k7spd42kkv0lj9wzm9"; depends=[cn_mops GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; }; - panp = derive2 { name="panp"; version="1.62.0"; sha256="0a1h0gb8cchh7wf71i63sg8r6cdz794hk7j7a0zgd2kq9mdpfl1a"; depends=[affy Biobase]; }; - parglms = derive2 { name="parglms"; version="1.24.1"; sha256="0vw42bap8vzdxx1bbhqrxyq41pvy2wq1jna9al56bw8zpfbpgj7y"; depends=[BatchJobs BiocGenerics doParallel foreach]; }; - parody = derive2 { name="parody"; version="1.50.0"; sha256="1ff8c1wg9fnjdahzi1v7ddkvwx399awm807bx3c9szxm9dc75xjj"; depends=[]; }; - pathRender = derive2 { name="pathRender"; version="1.60.0"; sha256="12cx9j05hdf9la1nwxllynm82wmsjcyzmgqiil1vp25jr1cfh23i"; depends=[AnnotationDbi cMAP graph RColorBrewer Rgraphviz]; }; - pathVar = derive2 { name="pathVar"; version="1.22.0"; sha256="0b95g4v58r101aj2q8pnbcv036w1yxi1qy54pw0b5r6383rm8nqd"; depends=[data_table EMT ggplot2 gridExtra Matching mclust]; }; - pathifier = derive2 { name="pathifier"; version="1.30.0"; sha256="1pck2rmbj81hwdilvf30jynkqlwmkx09ac96xmqa0i8d2yald53j"; depends=[princurve R_oo]; }; - pathview = derive2 { name="pathview"; version="1.32.0"; sha256="1fank0qavv9ikmzxvms8mky2wbzny02rfqkvsqzma26r3vl4r1g1"; depends=[AnnotationDbi graph KEGGgraph KEGGREST org_Hs_eg_db png Rgraphviz XML]; }; - pathwayPCA = derive2 { name="pathwayPCA"; version="1.8.0"; sha256="0k4qjypvlgjajvmpgl8jmrcw2czpb2dv69wi5f9pxqy969j2mbhx"; depends=[lars survival]; }; - paxtoolsr = derive2 { name="paxtoolsr"; version="1.26.0"; sha256="0kakb24hvi49z2wk9vlxyry6y85kdky02710rrxd5fwd4nibj1kz"; depends=[httr igraph jsonlite plyr R_utils readr rJava rjson XML]; }; - pcaExplorer = derive2 { name="pcaExplorer"; version="2.18.0"; sha256="1ia3kiiv53n4wgj62icmfskiw796cc8yvg2w3lzi60p1yl49306d"; depends=[AnnotationDbi base64enc biomaRt DESeq2 DT genefilter GenomicRanges ggplot2 ggrepel GO_db GOstats heatmaply IRanges knitr limma NMF pheatmap plotly plyr rmarkdown S4Vectors scales shiny shinyAce shinyBS shinydashboard SummarizedExperiment threejs tidyr topGO]; }; - pcaMethods = derive2 { name="pcaMethods"; version="1.84.0"; sha256="1ccqsxn487dy92c2d1iffh9917z4zq5ia92zv2h6pi00jjc6ymb5"; depends=[Biobase BiocGenerics MASS Rcpp]; }; - pcxn = derive2 { name="pcxn"; version="2.14.0"; sha256="1np3gj0i300dm6yc2bg938np6vmhrr0fm287kdhgz3a4m3lx4m6b"; depends=[pcxnData pheatmap]; }; - pdInfoBuilder = derive2 { name="pdInfoBuilder"; version="1.56.0"; sha256="0a6g5swfjc4mi9b1jamx3m6sb5a5q2r2vzfzn4jfh813z7fg58yz"; depends=[affxparser Biobase BiocGenerics Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - peakPantheR = derive2 { name="peakPantheR"; version="1.6.1"; sha256="02kmkwjsbfwwy6062w8vyp68aqbw77jf9zxq43pqwa2c69hglv8q"; depends=[doParallel DT foreach ggplot2 gridExtra minpack_lm MSnbase mzR pracma scales shiny shinycssloaders shinythemes stringr XML]; }; - peco = derive2 { name="peco"; version="1.4.0"; sha256="03cfndwisy6gmk1779j2m4nslzxpgmb7f8lyrdh8cvgzqpgf13xc"; depends=[assertthat circular conicfit doParallel foreach genlasso scater SingleCellExperiment SummarizedExperiment]; }; - pepStat = derive2 { name="pepStat"; version="1.26.0"; sha256="14jivr0jv8r6xpz2ragg5z48ckzvjx7sqnq1bcbbwavf7gcafj64"; depends=[Biobase data_table fields GenomicRanges ggplot2 IRanges limma plyr]; }; - pepXMLTab = derive2 { name="pepXMLTab"; version="1.26.0"; sha256="1nwhkm626dqrvp3vh10hnr1nvwq3rxcga2ljj547aib919gdax1b"; depends=[XML]; }; - periodicDNA = derive2 { name="periodicDNA"; version="1.2.0"; sha256="0sh4y6gzxchbx43pfrm6ck3idk08zd7f3lw7hc37j6avkp6sj3r6"; depends=[BiocParallel Biostrings BSgenome cowplot GenomeInfoDb GenomicRanges ggplot2 IRanges magrittr rtracklayer S4Vectors zoo]; }; - perturbatr = derive2 { name="perturbatr"; version="1.12.0"; sha256="01aa5g1g82rr6lbrjj69jfxgm52l1f6di0fnjbq2yz79hx60ba0g"; depends=[assertthat diffusr doParallel dplyr foreach formula_tools ggplot2 igraph lazyeval lme4 magrittr rlang scales tibble tidyr]; }; - pgca = derive2 { name="pgca"; version="1.16.0"; sha256="017ljgvn7xms49xnz5r0by4nvhy5q2p0xh5lx1nj32idgxbh5bcc"; depends=[]; }; - phantasus = derive2 { name="phantasus"; version="1.12.0"; sha256="0sfpxlvcgv0blg5n130f6d0l655r05sgz5cfnrmviv1sc2yvf2hd"; depends=[AnnotationDbi assertthat Biobase ccaPP curl DESeq2 fgsea GEOquery ggplot2 gtable htmltools httpuv httr jsonlite limma Matrix opencpu pheatmap protolite rhdf5 Rook scales stringr svglite]; }; - phemd = derive2 { name="phemd"; version="1.8.0"; sha256="13lysbwmw3w69q7js9xzlj01k8ffpqw32r7dvnkifrwfkvdhzdrw"; depends=[Biobase BiocGenerics cluster cowplot ggplot2 igraph maptree monocle phateR pheatmap pracma RANN RColorBrewer reticulate Rtsne S4Vectors scatterplot3d Seurat SingleCellExperiment SummarizedExperiment transport VGAM]; }; - phenoTest = derive2 { name="phenoTest"; version="1.40.0"; sha256="13sskjbpk6ncr1h4hxk5wzhp3bhb7mww53rv01psa5254az759c5"; depends=[annotate AnnotationDbi Biobase biomaRt BMA Category ellipse genefilter ggplot2 gplots GSEABase Heatplus hgu133a_db Hmisc hopach limma mgcv survival xtable]; }; - phenopath = derive2 { name="phenopath"; version="1.16.0"; sha256="187zqqsi4gbvzvbgddrk46s3npih2w0kqq22bdsf9qngyzcz5wxz"; depends=[dplyr ggplot2 Rcpp SummarizedExperiment tibble tidyr]; }; - philr = derive2 { name="philr"; version="1.18.0"; sha256="0ly13gb3kz3p13grb3kzkm84m3m8f1yb8isjy70kq4isr7vapf85"; depends=[ape ggplot2 ggtree phangorn tidyr]; }; - phosphonormalizer = derive2 { name="phosphonormalizer"; version="1.16.0"; sha256="0fasblqgf5c6j07mj6f3zxb42k87aqkb21fs0f9awpp7shm6k4vh"; depends=[matrixStats plyr]; }; - phyloseq = derive2 { name="phyloseq"; version="1.36.0"; sha256="192gv00xfnv9ljkgb0iw8sqzsay4f3vllyyc1slzsn15713fc4pi"; depends=[ade4 ape Biobase BiocGenerics biomformat Biostrings cluster data_table foreach ggplot2 igraph multtest plyr reshape2 scales vegan]; }; - piano = derive2 { name="piano"; version="2.8.0"; sha256="0zzz72iffxx6j0zpli3rd0fh6k1s7qnsih28102sxnwvj5gv5a7l"; depends=[Biobase BiocGenerics DT fgsea gplots htmlwidgets igraph marray relations scales shiny shinydashboard shinyjs visNetwork]; }; - pickgene = derive2 { name="pickgene"; version="1.64.0"; sha256="0cnqf9cj2hvpi8fwbq48lga6hjv6qs6wpadazr559z9vdybzlbhc"; depends=[MASS]; }; - pipeComp = derive2 { name="pipeComp"; version="1.2.0"; sha256="1gfcnw9chm5r8s0lam4vkx75hbhrh37gw616irr40p8lc30kk0r7"; depends=[aricode BiocParallel circlize clue cluster ComplexHeatmap cowplot dplyr ggplot2 intrinsicDimension knitr Matrix matrixStats randomcoloR RColorBrewer reshape2 Rtsne S4Vectors scales scater scran Seurat SingleCellExperiment SummarizedExperiment uwot viridisLite]; }; - pipeFrame = derive2 { name="pipeFrame"; version="1.8.0"; sha256="04jcwcliv0vjmgj0w0wyh7kdxz40dg7s7916d96bgmkirb1yr19j"; depends=[Biostrings BSgenome digest GenomeInfoDb magrittr visNetwork]; }; - pkgDepTools = derive2 { name="pkgDepTools"; version="1.58.0"; sha256="1i02ifg562k20p28l6cm4l28c9j0iqlly1ii50zm5872nqpqz42q"; depends=[graph RBGL]; }; - planet = derive2 { name="planet"; version="1.0.0"; sha256="0ajaa066fahfjv2k49sira4gyggxi699hvz8xl50y7a1xbvjir8p"; depends=[dplyr magrittr tibble]; }; - plethy = derive2 { name="plethy"; version="1.30.0"; sha256="1ncjmlnrjhqqnsfp191bwa4gnvbs1n8gji83f2cwvjlbiad7jl7k"; depends=[Biobase BiocGenerics DBI ggplot2 IRanges plyr RColorBrewer reshape2 RSQLite S4Vectors Streamer]; }; - plgem = derive2 { name="plgem"; version="1.64.0"; sha256="1rz5jk5bgpk7gjknx79jyslahjg46q2f4bx6dgd0vwmarc29a45z"; depends=[Biobase MASS]; }; - plier = derive2 { name="plier"; version="1.62.0"; sha256="1n2g7nm36i86v00nb6zkfkr7b8ns0mw6wqz0381bxwzpvvsb48dl"; depends=[affy Biobase]; }; - plotGrouper = derive2 { name="plotGrouper"; version="1.10.0"; sha256="1sq7hly0y4lx2fpxdswq2s3pjkfxssna3jiklr5dpc9241cfsxjg"; depends=[colourpicker dplyr egg ggplot2 ggpubr gridExtra gtable Hmisc magrittr readr readxl rlang scales shiny shinythemes stringr tibble tidyr]; }; - plyranges = derive2 { name="plyranges"; version="1.12.1"; sha256="0ws6m6mq69bj16kwr812z0sgwhj0mxyh19bc9qyfka1pwpkabm6m"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges IRanges magrittr rlang Rsamtools rtracklayer S4Vectors tidyselect]; }; - pmm = derive2 { name="pmm"; version="1.24.0"; sha256="0hd2w76qdb6hibs9xhxima3s6dk6kf0vvd3hs7xyxdbwcmhz3ka6"; depends=[lme4]; }; - pmp = derive2 { name="pmp"; version="1.4.0"; sha256="1lfbf4y02bq9kkw8bikf7v1n0zsqd4ncn3r4fm9hzfvzrsdcrz10"; depends=[ggplot2 impute matrixStats missForest pcaMethods reshape2 S4Vectors SummarizedExperiment]; }; - podkat = derive2 { name="podkat"; version="1.24.0"; sha256="033lkq9h6qw3yyr8zv63jsyrm21kswngz538szjbpvky0x4avakf"; depends=[Biobase BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp Rhtslib Rsamtools]; }; - pogos = derive2 { name="pogos"; version="1.12.2"; sha256="008kp86wibbj5sd4814s4056ayk1aldapbvcxn775pw3rdki0rxl"; depends=[ggplot2 httr ontoProc rjson S4Vectors shiny]; }; - polyester = derive2 { name="polyester"; version="1.28.0"; sha256="0f7hp7f42j0k12xhxg4zvsnhakn8xrs0iv0kqanyvjd0krxf6nf0"; depends=[Biostrings IRanges limma logspline S4Vectors zlibbioc]; }; - powerTCR = derive2 { name="powerTCR"; version="1.12.0"; sha256="1il4xh3njgh2z0gdwkzpcyzrd8q0sbvlfsxb87lskf0rsqmzvvmj"; depends=[cubature doParallel evmix foreach magrittr purrr truncdist vegan VGAM]; }; - ppcseq = derive2 { name="ppcseq"; version="1.0.0"; sha256="0ba8qh4rdhydi5a99q7g0c9gdn72wzby9is968x88g1ax17bwmyc"; depends=[benchmarkme BH dplyr edgeR foreach furrr future ggplot2 lifecycle magrittr purrr Rcpp RcppEigen rlang rstan rstantools StanHeaders tibble tidybayes tidyr]; }; - ppiStats = derive2 { name="ppiStats"; version="1.58.0"; sha256="1gwffsjpgcxrl43n0knvzwh10fsdlra9p4q585s0s865qmhakf3y"; depends=[Biobase Category graph lattice ppiData RColorBrewer ScISI]; }; - pqsfinder = derive2 { name="pqsfinder"; version="2.8.0"; sha256="0nk08x0l4xisbwkp2nc8rb3l5xgcah5xmaypws4s1y8ak4q3nqf3"; depends=[BH Biostrings GenomicRanges IRanges Rcpp S4Vectors]; }; - pram = derive2 { name="pram"; version="1.8.0"; sha256="1g60hy6ia563ajivrj9fqzv0ql7cnyw6ggf3j5s4xm47s9ddymb8"; depends=[BiocGenerics BiocParallel data_table GenomeInfoDb GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; }; - prebs = derive2 { name="prebs"; version="1.32.0"; sha256="17xnphbrx538wywfzisagrdqqxf8gi8bia50n57finclm9bj22jf"; depends=[affy Biobase GenomeInfoDb GenomicAlignments GenomicRanges IRanges RPA S4Vectors]; }; - preciseTAD = derive2 { name="preciseTAD"; version="1.2.0"; sha256="15f34jk29fbsmjgcixkbyga5xm49lpyxsppafr7lawxnv80fkzy5"; depends=[caret cluster dbscan doSNOW e1071 foreach GenomicRanges IRanges ModelMetrics pbapply pROC PRROC randomForest S4Vectors]; }; - predictionet = derive2 { name="predictionet"; version="1.38.0"; sha256="0ygxkby1s54jxybsrh4xwi9jnp3r6cc98rn01qzlav1qnqavmhy1"; depends=[catnet igraph MASS penalized RBGL]; }; - preprocessCore = derive2 { name="preprocessCore"; version="1.54.0"; sha256="17a00blz4kvhmsk92bp5alj9kdpy7h1id7nk4vqxakhkb2jabr20"; depends=[]; }; - primirTSS = derive2 { name="primirTSS"; version="1.10.0"; sha256="1bmskpidn16s5m44xjhz5phpmffsgp482r7dfjh6xx91csy82kc7"; depends=[BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg38 dplyr GenomicRanges GenomicScores Gviz IRanges JASPAR2018 phastCons100way_UCSC_hg38 purrr R_utils rtracklayer S4Vectors shiny stringr TFBSTools tibble tidyr]; }; - proActiv = derive2 { name="proActiv"; version="1.2.0"; sha256="1rrvq4z05rk7kxrh4v3vikws9v62mvy7bqfirkwv5mgv90i0ipc6"; depends=[AnnotationDbi BiocParallel data_table DESeq2 dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 Gviz IRanges rlang S4Vectors SummarizedExperiment tibble]; }; - proBAMr = derive2 { name="proBAMr"; version="1.26.0"; sha256="07nv5b3dlm5wb5gs65ky4fxbpxwgxq0rgn73lgcaxha9ccmws2jp"; depends=[AnnotationDbi Biostrings GenomicFeatures GenomicRanges IRanges rtracklayer]; }; - proBatch = derive2 { name="proBatch"; version="1.8.0"; sha256="1vf126w2vwc7aaw3h3bzd6h3ll81615mbmi0svlqghzch19x9nc4"; depends=[Biobase corrplot data_table dplyr ggfortify ggplot2 lazyeval lubridate magrittr pheatmap preprocessCore purrr pvca RColorBrewer reshape2 rlang scales sva tibble tidyr viridis wesanderson WGCNA]; }; - proDA = derive2 { name="proDA"; version="1.6.0"; sha256="1p34fj037rq4x1x41lxh5qn0wi92ykdd7az4q0zj0rz53hmklr8m"; depends=[BiocGenerics extraDistr S4Vectors SummarizedExperiment]; }; - proFIA = derive2 { name="proFIA"; version="1.18.0"; sha256="00caarlcxfk8b2f6q001bafv9gx546flfxq0kgjv802dca2rdpjv"; depends=[Biobase BiocParallel minpack_lm missForest pracma ropls xcms]; }; - procoil = derive2 { name="procoil"; version="2.20.0"; sha256="0j38p3qr0zadam0zgi45z2bm4xspxczxknq7pbs2sza6xsvjcbkz"; depends=[Biostrings kebabs S4Vectors]; }; - profileScoreDist = derive2 { name="profileScoreDist"; version="1.20.0"; sha256="15y76zyqslcmw0vdqngp2gl6dizaf7ihlf30apjj54z478cyhz5k"; depends=[BiocGenerics Rcpp]; }; - profileplyr = derive2 { name="profileplyr"; version="1.8.1"; sha256="09f5c60cyg6hn6d5d4s8l1z9sknv3chw6cvpgbrkmvmafm4namkg"; depends=[BiocGenerics BiocParallel Cairo ChIPseeker circlize ComplexHeatmap dplyr EnrichedHeatmap GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges magrittr org_Hs_eg_db org_Mm_eg_db pheatmap R_utils rGREAT rjson rlang Rsamtools rtracklayer S4Vectors soGGi SummarizedExperiment tidyr tiff TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene]; }; - progeny = derive2 { name="progeny"; version="1.14.0"; sha256="10vpjvl4wps857xiy8rpzr82jzdfbc5rgwh3ir3my26lfws4hfz8"; depends=[Biobase dplyr ggplot2 ggrepel gridExtra tidyr]; }; - projectR = derive2 { name="projectR"; version="1.8.0"; sha256="0c7vi6x8jdwpl6pcih1r9kdwrjjjf7swyx124c2w2fq2f115qp07"; depends=[cluster CoGAPS dplyr ggalluvial ggplot2 limma NMF RColorBrewer reshape2 ROCR scales viridis]; }; - proteinProfiles = derive2 { name="proteinProfiles"; version="1.32.0"; sha256="1rkl5v7marwxs7069hhsvp69inlpvbklpgzn58yfsk47d7ljrhhr"; depends=[]; }; - psichomics = derive2 { name="psichomics"; version="1.18.6"; sha256="0pny5y04xqk9gn1mwaly6ml1i69jmz7d9yl0vzflflhnvbr4lm11"; depends=[AnnotationDbi AnnotationHub BiocFileCache cluster colourpicker data_table digest dplyr DT edgeR fastICA fastmatch ggplot2 ggrepel highcharter htmltools httr jsonlite limma pairsD3 plyr purrr R_utils Rcpp recount reshape2 Rfast shiny shinyBS shinyjs stringr SummarizedExperiment survival XML xtable]; }; - psygenet2r = derive2 { name="psygenet2r"; version="1.24.0"; sha256="185z387cdipac0sljgfx3xc39sv4p7f26amaw5lfnf822ibmhf5d"; depends=[BgeeDB Biobase biomaRt ggplot2 GO_db igraph labeling RCurl reshape2 stringr topGO]; }; - ptairMS = derive2 { name="ptairMS"; version="1.0.1"; sha256="1ss1dwbdls977l2hjjvfl4cjyd9f822wh0bjyg4dhq33mypr7sfj"; depends=[Biobase bit64 chron data_table doParallel DT enviPat foreach ggplot2 ggpubr gridExtra Hmisc minpack_lm MSnbase plotly Rcpp rhdf5 rlang scales shiny shinyscreenshot signal]; }; - pulsedSilac = derive2 { name="pulsedSilac"; version="1.6.0"; sha256="1vvcrd38v1x602z72hxvbb66xg1r6p2a1izmkivdifkzy0i5m1vl"; depends=[cowplot ggplot2 ggridges MuMIn R_utils robustbase S4Vectors SummarizedExperiment taRifx UpSetR]; }; - puma = derive2 { name="puma"; version="3.34.0"; sha256="0bqc37bj2hmwjiri5x2x0pahhvz1zaqaphandv6v3zjrabgv60dm"; depends=[affy affyio Biobase mclust oligo oligoClasses]; }; - pvac = derive2 { name="pvac"; version="1.40.0"; sha256="1qdi6m2xdk751xkdxbm9wk16x5r2j8diggr7h4x953wwgc9wfi3m"; depends=[affy Biobase]; }; - pvca = derive2 { name="pvca"; version="1.32.0"; sha256="0kax1szfb1d869xkmvylwfcy0acisvkhgvgwm1z4nd2gmg252655"; depends=[Biobase lme4 Matrix vsn]; }; - pwOmics = derive2 { name="pwOmics"; version="1.24.0"; sha256="0rybmc70vwwhlhxcbalxw2iywzxchynbc39kig4cy33nb8hamzzk"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics biomaRt data_table GenomicRanges gplots graph igraph rBiopaxParser STRINGdb]; }; - pwrEWAS = derive2 { name="pwrEWAS"; version="1.6.0"; sha256="0kzkq2yf9z6wqn38kanf0axy9i522yi65qwr2xpgw6p3j6ng85ld"; depends=[abind BiocManager CpGassoc doParallel doSNOW foreach genefilter ggplot2 limma pwrEWAS_data shiny shinyBS shinyWidgets truncnorm]; }; - qPLEXanalyzer = derive2 { name="qPLEXanalyzer"; version="1.10.0"; sha256="02ryj0gn4ks9rchx5xg5lfyyrprkzjfghrmgf0hbjsar54d8yy1k"; depends=[assertthat Biobase BiocGenerics Biostrings dplyr ggdendro ggplot2 IRanges limma magrittr MSnbase preprocessCore purrr RColorBrewer readr rlang scales stringr tibble tidyr tidyselect]; }; - qckitfastq = derive2 { name="qckitfastq"; version="1.8.0"; sha256="17vclhgbvhyl427pp5yhjkkdn0psplxa89kggvpcn5v4dzxwd9a6"; depends=[data_table dplyr ggplot2 magrittr Rcpp reshape2 rlang RSeqAn seqTools zlibbioc]; }; - qcmetrics = derive2 { name="qcmetrics"; version="1.30.0"; sha256="0vz5wpan18kavsm5kynjcriklp407icnb3bcbx36mh3rrhv6nbsq"; depends=[Biobase knitr pander S4Vectors xtable]; }; - qpcrNorm = derive2 { name="qpcrNorm"; version="1.50.0"; sha256="0ijvp0j4rl0r0mg7kb483hayqsl0lj5fmfwm888sqlymbxdqij35"; depends=[affy Biobase limma]; }; - qpgraph = derive2 { name="qpgraph"; version="2.26.0"; sha256="0m1kcdjs4vilyb8yiqck62h47yjfalydz62gjm3nb1j1pqyq5m14"; depends=[annotate AnnotationDbi Biobase BiocParallel GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges Matrix mvtnorm qtl Rgraphviz S4Vectors]; }; - qrqc = derive2 { name="qrqc"; version="1.46.0"; sha256="0bhk4sj815hdgrpk8jyw01pjdlvnd2rhq8as5s3yk3i5zzwd7f1v"; depends=[Biostrings biovizBase brew ggplot2 plyr reshape Rhtslib testthat xtable]; }; - qsea = derive2 { name="qsea"; version="1.18.0"; sha256="0qs7f5yrszyimb2lx8kl374svx8yv5bnpjkwgrqbx9lr4ix7jc33"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges gtools HMMcopy IRanges KernSmooth limma MASS Rsamtools rtracklayer zoo]; }; - qsmooth = derive2 { name="qsmooth"; version="1.8.0"; sha256="13fryldfkbkralm58z4c48slh8d9ckk2h95pvl3s0z9w1i67jf87"; depends=[SummarizedExperiment sva]; }; - quantiseqr = derive2 { name="quantiseqr"; version="1.0.0"; sha256="0701msl79asnqmss3ci7jnir5a01g50lbyxhkd5p9cj7a2l8qymd"; depends=[Biobase ggplot2 limSolve MASS preprocessCore rlang SummarizedExperiment tidyr]; }; - quantro = derive2 { name="quantro"; version="1.26.0"; sha256="1fkma2ic448h2lrlza8ipg65gpfsz4fhlxcnjpmzhhmzp2xi2p4a"; depends=[Biobase doParallel foreach ggplot2 iterators minfi RColorBrewer]; }; - quantsmooth = derive2 { name="quantsmooth"; version="1.58.0"; sha256="0nq0khip6v67g3d3gyzg18xwhfxz34l8vmki1p8m9rqa1iq0i43x"; depends=[quantreg]; }; - qusage = derive2 { name="qusage"; version="2.26.0"; sha256="1rg8y5jqw1ckhmqvg4k4di4l4hf8cvmaq3wzvhb2l2fqkl4zhjh7"; depends=[Biobase emmeans fftw limma nlme]; }; - qvalue = derive2 { name="qvalue"; version="2.24.0"; sha256="0xssanffh1hr7f48mnazcpwi25rdp7mxlyb9nbf4q2mp7m40jnpm"; depends=[ggplot2 reshape2]; }; - r3Cseq = derive2 { name="r3Cseq"; version="1.38.0"; sha256="023xwqsc1da4sdvnlhakb7mj8wab9rvg592zy1rxz51j2hwwhkx0"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges IRanges qvalue RColorBrewer Rsamtools rtracklayer sqldf VGAM]; }; - rBiopaxParser = derive2 { name="rBiopaxParser"; version="2.32.0"; sha256="02pgrklln1srfzq907sk1h543in7vs6zpwfq46kxq0xhr40ryd20"; depends=[data_table XML]; }; - rCGH = derive2 { name="rCGH"; version="1.22.0"; sha256="039zks8h1dgrr9gmk2gb7rxvjb27j532klbak1c2z2j1a138cvhc"; depends=[aCGH affy AnnotationDbi DNAcopy GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges lattice limma mclust org_Hs_eg_db plyr shiny TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; - rDGIdb = derive2 { name="rDGIdb"; version="1.18.0"; sha256="1nanh1gnsd7wgi4pm4jw17agqk3c3yaqcay9dxl6symz685f84br"; depends=[httr jsonlite]; }; - rGADEM = derive2 { name="rGADEM"; version="2.40.0"; sha256="05drbhjqn5kik6k4h03vr3d2b6pv5rm65lsnkyx4caxxcdii4jzm"; depends=[Biostrings BSgenome GenomicRanges IRanges seqLogo]; }; - rGREAT = derive2 { name="rGREAT"; version="1.24.0"; sha256="0ads9c9i8b39wvjih057zlyivj8zpsqjxf6r97yflz4sbi1jmcji"; depends=[GenomicRanges GetoptLong IRanges RCurl rjson]; }; - rRDP = derive2 { name="rRDP"; version="1.26.0"; sha256="0a6j8786njbx7ja5053xzr40iqif2vm6zq9qxwm7mmk0k6dh2nm6"; depends=[Biostrings]; }; - rSWeeP = derive2 { name="rSWeeP"; version="1.4.0"; sha256="0p9743kpk3xabq698yb5xwj6m6v193zvm0b7ddg4h3d6nzz45k6p"; depends=[pracma]; }; - rScudo = derive2 { name="rScudo"; version="1.8.0"; sha256="1wqrzgj595h7agp3hm5zgnig7f6cmw6y0aq0msq9w8rm97n6nyrp"; depends=[Biobase BiocGenerics igraph S4Vectors stringr SummarizedExperiment]; }; - rTRM = derive2 { name="rTRM"; version="1.30.0"; sha256="1j127s66mqillmy09h8asdmif043w1yjqzyfq70k5gcz3qr69kyd"; depends=[AnnotationDbi DBI igraph RSQLite]; }; - rTRMui = derive2 { name="rTRMui"; version="1.30.0"; sha256="081x7ym8cnnhdff4dfxpwypk04fwg7d2w5b58kcr9fqb4d0vx72k"; depends=[MotifDb org_Hs_eg_db org_Mm_eg_db rTRM shiny]; }; - rWikiPathways = derive2 { name="rWikiPathways"; version="1.12.0"; sha256="12s4zd6qkvs2van7k34i5w7zd18c5bn72gbwyk3g6dsq84h6h5h7"; depends=[data_table httr RCurl rjson tidyr XML]; }; - rain = derive2 { name="rain"; version="1.26.0"; sha256="1llzn7dhhj38mr36bzy063vg2rgbrhpx4pzkcnc86psrfbh2b786"; depends=[gmp multtest]; }; - rama = derive2 { name="rama"; version="1.66.0"; sha256="19as3qxcvkqb9ly9jvp1hy7avdyarbvavhsvzykf29rna7lz6s9g"; depends=[]; }; - ramr = derive2 { name="ramr"; version="1.0.3"; sha256="1zind0908rqkb6f6i5224ygzpl5spaka332x8dxby699k4hgjbpl"; depends=[BiocGenerics doParallel doRNG EnvStats ExtDist foreach GenomicRanges ggplot2 IRanges matrixStats reshape2 S4Vectors]; }; - ramwas = derive2 { name="ramwas"; version="1.16.0"; sha256="0jdiaxi1ddbbyjkbi0wv5gzw8q2z7d1l18qcqjwll48ml34a5f88"; depends=[BiocGenerics biomaRt Biostrings digest filematrix GenomicAlignments glmnet KernSmooth Rsamtools]; }; - randPack = derive2 { name="randPack"; version="1.38.0"; sha256="1223g4971gizsq6vd0hkgjkg3192c7z9xc9fpcnq06913q4gv78d"; depends=[Biobase]; }; - randRotation = derive2 { name="randRotation"; version="1.4.0"; sha256="0x4gji435lh1l8ncss953qq4q33ygbqjnqbasy664sajhqwfaqv9"; depends=[Rdpack]; }; - rawrr = derive2 { name="rawrr"; version="1.0.3"; sha256="1i6lrb8lmyzan6g3i9cycw71s31z5d4szsmc1iq4q3xk98kavwff"; depends=[]; }; - rbsurv = derive2 { name="rbsurv"; version="2.50.0"; sha256="0x4v1byb44pgfrl3dj30yx6gxi8gfyjicd128nii8ch9rhhxnjl9"; depends=[Biobase survival]; }; - rcellminer = derive2 { name="rcellminer"; version="2.14.0"; sha256="091vsjjq3zwn7g39zx43f0jkqh5x89bm0k93a6dzi5l2drf3nb3h"; depends=[Biobase ggplot2 gplots rcellminerData shiny stringr]; }; - rebook = derive2 { name="rebook"; version="1.2.1"; sha256="1z597559a26lzgs1gy2cns4gqy4dfpx3anlfshxdr2y48dwrg3h1"; depends=[BiocStyle CodeDepends dir_expiry filelock knitr rmarkdown]; }; - receptLoss = derive2 { name="receptLoss"; version="1.4.0"; sha256="17fpvpz73f6h650sbfvnvvcmabxxzjg134msfidff35n63j7jkkn"; depends=[dplyr ggplot2 magrittr SummarizedExperiment tidyr]; }; - reconsi = derive2 { name="reconsi"; version="1.4.0"; sha256="0bpfxhbgrxf84qxzz7w4spxm91m34n8ghigf1l78hdsin98x8zy0"; depends=[ggplot2 KernSmooth matrixStats phyloseq reshape2]; }; - recount = derive2 { name="recount"; version="1.18.1"; sha256="0lkanj072r7vz95cp90chrb3kfgkkvsd8bvvizvw4rasfljbb01d"; depends=[BiocParallel derfinder downloader GenomeInfoDb GenomicRanges GEOquery IRanges RCurl rentrez rtracklayer S4Vectors SummarizedExperiment]; }; - recount3 = derive2 { name="recount3"; version="1.2.6"; sha256="0j0syvl3yzd8q8yba9s3r109m255qrs7zy6abhypmq1ds842gvpr"; depends=[BiocFileCache data_table GenomicRanges Matrix R_utils RCurl rtracklayer S4Vectors sessioninfo SummarizedExperiment]; }; - recountmethylation = derive2 { name="recountmethylation"; version="1.2.3"; sha256="0k5hnc0ywppdyr8y8y90p5iidrm3mwsc2c1ihjb4v3cgf3w9nby3"; depends=[BiocFileCache HDF5Array minfi R_utils RCurl rhdf5 S4Vectors]; }; - recoup = derive2 { name="recoup"; version="1.20.1"; sha256="1sspqlqlm4ifxr74yp3621qhnyh3x989nzvxgah142lf0p3ch77m"; depends=[BiocGenerics biomaRt Biostrings circlize ComplexHeatmap GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 httr IRanges Rsamtools RSQLite rtracklayer S4Vectors stringr]; }; - regionReport = derive2 { name="regionReport"; version="1.26.0"; sha256="044hwavvi4mp6j6sxjsdm88dbzxjg4p18qw4y0bp2zsj9swf8ffc"; depends=[BiocStyle DEFormats derfinder DESeq2 GenomeInfoDb GenomicRanges knitr knitrBootstrap RefManageR rmarkdown S4Vectors SummarizedExperiment]; }; - regioneR = derive2 { name="regioneR"; version="1.24.0"; sha256="0xzzaz3cl6pyxfsg0d931v8k15wbd05s5mnsb7igxldc5qqg3nsl"; depends=[Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges memoise rtracklayer S4Vectors]; }; - regsplice = derive2 { name="regsplice"; version="1.18.0"; sha256="0vnq82xhj9401j17zb0p40ls6aqwng7ganllkblkh744bqlqrbd6"; depends=[edgeR glmnet limma pbapply S4Vectors SummarizedExperiment]; }; - regutools = derive2 { name="regutools"; version="1.4.0"; sha256="0l8w0qawz0hfp6blshnx6r76ccgal7vc3g4vm0idc6f2s0fvy0hm"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings DBI GenomicRanges Gviz IRanges RCy3 RSQLite S4Vectors]; }; - restfulSE = derive2 { name="restfulSE"; version="1.14.2"; sha256="1kqjzi76v4vla11g8vp5wdasgpz2wb82lfbp7j58jh13vipdycgl"; depends=[AnnotationDbi AnnotationHub bigrquery Biobase DBI DelayedArray dplyr ExperimentHub GO_db magrittr reshape2 rhdf5client rlang S4Vectors SummarizedExperiment]; }; - rexposome = derive2 { name="rexposome"; version="1.14.1"; sha256="0r70picz7id60ypcpzdm0jg4yrxmwwxsqw6brm732wf634r78l4y"; depends=[Biobase circlize corrplot FactoMineR ggplot2 ggrepel glmnet gplots gridExtra gtools Hmisc imputeLCMD lme4 lsr mice pryr reshape2 S4Vectors scales scatterplot3d stringr]; }; - rfPred = derive2 { name="rfPred"; version="1.30.0"; sha256="1pv3rchf38kvds3bk0y8v7wwx6pcky3nzc2d4d8pz6ppcmqs5174"; depends=[data_table GenomicRanges IRanges Rsamtools]; }; - rfaRm = derive2 { name="rfaRm"; version="1.4.3"; sha256="096ifcp7ic9hfj2z2mnkpv5xnl4hcryyl25wq7brbs6rqd9ym7sv"; depends=[Biostrings data_table httr IRanges magick rsvg rvest S4Vectors stringi xml2]; }; - rgsepd = derive2 { name="rgsepd"; version="1.24.0"; sha256="196ngkx02q912xsns30q8if8002ic3r8ymrg1k7z90b4d3dz0ywr"; depends=[AnnotationDbi biomaRt DESeq2 GO_db goseq gplots hash org_Hs_eg_db SummarizedExperiment]; }; - rhdf5 = derive2 { name="rhdf5"; version="2.36.0"; sha256="1a5kw9ry9cr258al0x3q0ss5xn1ymscdypx51vzzgzamhy7dqakz"; depends=[rhdf5filters Rhdf5lib]; }; - rhdf5client = derive2 { name="rhdf5client"; version="1.14.2"; sha256="10lsijall2mvwnbfzgfbdnzh0fcii22qlvk0530rbggpp2l4lwkz"; depends=[DelayedArray httr R6 rjson S4Vectors]; }; - rhdf5filters = derive2 { name="rhdf5filters"; version="1.4.0"; sha256="133v0s452acspi4dbf6gsa2xrr0qza86jdjjbpwhdv6zfd1djbgc"; depends=[Rhdf5lib]; }; - riboSeqR = derive2 { name="riboSeqR"; version="1.26.0"; sha256="1m5w2j35wr0lzwir4s58z757vrcsj5mglsqrkvs241k0hlmn06qa"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools seqLogo]; }; - ribor = derive2 { name="ribor"; version="1.4.0"; sha256="1q534sg3iivkmgipa74bkqsfc10zvcb707r8wmlmpg3735za24xg"; depends=[dplyr ggplot2 hash rhdf5 rlang S4Vectors tidyr yaml]; }; - ribosomeProfilingQC = derive2 { name="ribosomeProfilingQC"; version="1.4.0"; sha256="1qgjixj8vqnw5a4ycd75m9d1vcny0vd72h10nmhh2c8rjnifdryf"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome cluster EDASeq GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggfittext ggplot2 ggrepel IRanges motifStack Rsamtools Rsubread rtracklayer RUVSeq S4Vectors scales XVector]; }; - rmelting = derive2 { name="rmelting"; version="1.8.0"; sha256="1308sf6lib6ll04mll7iycnh123sjj09kmazicg9cfd1jcp17g01"; depends=[Rdpack rJava]; }; - rnaEditr = derive2 { name="rnaEditr"; version="1.2.0"; sha256="0832569shfpbq06b0bmjzy5xf9z6gahpq178z4hypbnnmwvjip8z"; depends=[BiocGenerics bumphunter corrplot GenomeInfoDb GenomicRanges IRanges logistf plyr S4Vectors survival]; }; - rnaseqcomp = derive2 { name="rnaseqcomp"; version="1.22.0"; sha256="0xhak5wmah6i1fpcz70d2blphhyxzyyah8lvgbylrmy0xmdfasbm"; depends=[RColorBrewer]; }; - roar = derive2 { name="roar"; version="1.28.0"; sha256="0vp0n90rvjm8rzwkbrxa3fasb9val56bz2srz72xwsl3jzb5yk6w"; depends=[BiocGenerics GenomeInfoDb GenomicAlignments GenomicRanges IRanges rtracklayer S4Vectors SummarizedExperiment]; }; - rols = derive2 { name="rols"; version="2.20.1"; sha256="156ysd39zl20zzw7wsv70cngs75yiv3w90i365l2rjhqvqkya63b"; depends=[Biobase BiocGenerics httr jsonlite progress]; }; - ropls = derive2 { name="ropls"; version="1.24.0"; sha256="1j99kdywyljqzdcns5ysh590w4w8iiwzpddpfk5c8d4whax7vk5b"; depends=[Biobase MultiDataSet]; }; - rpx = derive2 { name="rpx"; version="2.0.3"; sha256="0yp9d5cbs6z510bylydwpz6r02rn755ida7vvvda1fhh3q061r0f"; depends=[BiocFileCache jsonlite RCurl xml2]; }; - rqt = derive2 { name="rqt"; version="1.18.0"; sha256="011qmbbgnaas3j8077x8yghz6249v11zz5ic6bj3yndfqxsx327i"; depends=[car CompQuadForm glmnet Matrix metap pls ropls RUnit SummarizedExperiment]; }; - rqubic = derive2 { name="rqubic"; version="1.38.0"; sha256="1jhawn72s5h2pfbyhlc0yldmc9wbdwrb5iwib7mkagj2mwwfsp32"; depends=[biclust Biobase BiocGenerics]; }; - rrvgo = derive2 { name="rrvgo"; version="1.4.4"; sha256="0h77mzr792dhjb410c32g6fhivl8786v88pbcpbbkdqcwnxfxny0"; depends=[AnnotationDbi ggplot2 ggrepel GO_db GOSemSim pheatmap shiny tm treemap wordcloud]; }; - rsbml = derive2 { name="rsbml"; version="2.50.0"; sha256="017xwra6ms7kx6sg3ksw1vr9zn23imc2qjgpmjikx7mgbak125xh"; depends=[BiocGenerics graph]; }; - rsemmed = derive2 { name="rsemmed"; version="1.2.0"; sha256="10rzf1hh0vpc9mhvzmhl75cinfr13qnjsqdf47pk0rg19wdw6021"; depends=[dplyr igraph magrittr stringr]; }; - rtracklayer = derive2 { name="rtracklayer"; version="1.52.1"; sha256="11w6dx09pb49lin1gr9q88xn7ixh9jd5z6m9z27djchm0nw10lx9"; depends=[BiocGenerics BiocIO Biostrings GenomeInfoDb GenomicAlignments GenomicRanges IRanges RCurl restfulr Rsamtools S4Vectors XML XVector zlibbioc]; }; - runibic = derive2 { name="runibic"; version="1.14.0"; sha256="0xk7038h56l1im6akqj6bph7b19z1imikp9pbnpxr2nvk5xpbl78"; depends=[biclust Rcpp SummarizedExperiment testthat]; }; - sRACIPE = derive2 { name="sRACIPE"; version="1.8.0"; sha256="03xj1i0wp79l3nb5fh9jlw7vrnccp167zx6dg49p690rsxyzbik4"; depends=[BiocGenerics ggplot2 gplots gridExtra htmlwidgets MASS RColorBrewer Rcpp reshape2 S4Vectors SummarizedExperiment umap visNetwork]; }; - sSeq = derive2 { name="sSeq"; version="1.30.0"; sha256="0pcc18sgd28vhqgq9wz71dn8s7bfzq738qvgzxyyr995m9k8dqzk"; depends=[caTools RColorBrewer]; }; - safe = derive2 { name="safe"; version="3.32.0"; sha256="058xya9g61gskcfv3vxwadszpkvhkiip6vdn4rpaf2jf07k5fwlr"; depends=[AnnotationDbi Biobase SparseM]; }; - sagenhaft = derive2 { name="sagenhaft"; version="1.62.0"; sha256="0hgb9zyzcxcjcqlch3hax3rvvk2p0k3bqfbfbdd4vg43vf9f8119"; depends=[SparseM]; }; - sampleClassifier = derive2 { name="sampleClassifier"; version="1.16.0"; sha256="0499k1959hls94f59cc0w0mcg7j8hb5xrp5sn5d3kmv5b3b104zx"; depends=[annotate e1071 ggplot2 MGFM MGFR]; }; - sangeranalyseR = derive2 { name="sangeranalyseR"; version="1.2.0"; sha256="1mpakmwm5gng05wvnfrb5w2z64ihq40wvr865mq3lrl1xvfhpj3h"; depends=[ape BiocStyle Biostrings data_table DECIPHER DT excelR ggdendro gridExtra kableExtra logger openxlsx phangorn plotly reshape2 rmarkdown sangerseqR seqinr shiny shinycssloaders shinydashboard shinyjs shinyWidgets stringr zeallot]; }; - sangerseqR = derive2 { name="sangerseqR"; version="1.28.0"; sha256="0bsm027bqyr3b7c2fd7j7bzaklbsbp7bwn4343xxbzlwjdvp3ywc"; depends=[Biostrings shiny]; }; - sarks = derive2 { name="sarks"; version="1.4.0"; sha256="073hhbvc67lvxa33i3fyxvh5ncr2b78j2b4xck4glwdqkbrdx0rf"; depends=[binom Biostrings cluster IRanges rJava]; }; - satuRn = derive2 { name="satuRn"; version="1.0.0"; sha256="08gccrx8gp89q34n8ayag8j2bvq49p94b5cpfqvjpp5bbaq5npgf"; depends=[BiocParallel boot ggplot2 limma locfdr Matrix pbapply SummarizedExperiment]; }; - savR = derive2 { name="savR"; version="1.30.0"; sha256="1ynp334hm76zf05j4f6vha6r16s5f2ncxx9yviq4rxidk9r723jq"; depends=[ggplot2 gridExtra reshape2 scales XML]; }; - scAlign = derive2 { name="scAlign"; version="1.6.0"; sha256="0g1gmb2fy9yrirsnzlqf02vapzcp3569fbcq6cjm0xggv7r07a9j"; depends=[FNN ggplot2 irlba purrr Rtsne Seurat SingleCellExperiment tensorflow]; }; - scBFA = derive2 { name="scBFA"; version="1.6.0"; sha256="19jwlp4pym307xxyabnn0vwcya45kjvb0wcr5gl3adfj1wsbrm20"; depends=[copula DESeq2 ggplot2 MASS Matrix Seurat SingleCellExperiment SummarizedExperiment zinbwave]; }; - scCB2 = derive2 { name="scCB2"; version="1.2.0"; sha256="1w311bg8xhvgm49z9l1p9y50gr3q8z4hixv7vdwfgr067pivz5f8"; depends=[doParallel DropletUtils edgeR foreach iterators Matrix rhdf5 Seurat SingleCellExperiment SummarizedExperiment]; }; - scClassifR = derive2 { name="scClassifR"; version="1.0.0"; sha256="09gfr3yf3wvxiaz4s2bnmxm3khmhwa0zcqxnblgwszg393nawgrh"; depends=[ape caret data_tree dplyr e1071 ggplot2 kernlab pROC ROCR Seurat SingleCellExperiment SummarizedExperiment]; }; - scClassify = derive2 { name="scClassify"; version="1.4.0"; sha256="1lfspdc3n6cz0w2arqncsafrf0py0v30kv3shvsl596g2dxc1109"; depends=[BiocParallel cluster diptest ggplot2 ggraph hopach igraph limma Matrix mgcv minpack_lm mixtools proxy proxyC S4Vectors statmod]; }; - scDD = derive2 { name="scDD"; version="1.16.0"; sha256="1dw9m3m99apmbs32461c6lnmy81n5hxbhz3p8jk419gajkh4v1ji"; depends=[arm BiocParallel EBSeq fields ggplot2 mclust outliers S4Vectors scran SingleCellExperiment SummarizedExperiment]; }; - scDataviz = derive2 { name="scDataviz"; version="1.2.0"; sha256="0rah7rmybq2qbs1yr9aw74pqqbs8j0ga5jq83jvdnf9b4fql6gvj"; depends=[corrplot flowCore ggplot2 ggrepel MASS matrixStats RColorBrewer reshape2 S4Vectors scales Seurat SingleCellExperiment umap]; }; - scDblFinder = derive2 { name="scDblFinder"; version="1.6.0"; sha256="1xazz2yzima2igpygyvrsjsbjayk58vxrg2cra0zm0mzam5rda1v"; depends=[BiocGenerics BiocNeighbors BiocParallel BiocSingular bluster DelayedArray igraph Matrix mbkmeans S4Vectors scater scran scuttle SingleCellExperiment SummarizedExperiment xgboost]; }; - scFeatureFilter = derive2 { name="scFeatureFilter"; version="1.12.0"; sha256="03v7hsql5zy5s55g77acsbk2v9w4kmsvdm5m0mxj0x94gybik04b"; depends=[dplyr ggplot2 magrittr rlang tibble]; }; - scGPS = derive2 { name="scGPS"; version="1.6.0"; sha256="0d17nxc3w9cn8h0nw0viv0114zfh9s2plmyhyf6f8pz84m6q16hi"; depends=[caret DESeq2 dplyr dynamicTreeCut fastcluster ggplot2 glmnet locfit Rcpp RcppArmadillo RcppParallel SingleCellExperiment SummarizedExperiment]; }; - scHOT = derive2 { name="scHOT"; version="1.4.0"; sha256="0g6i7ab9rz9a6jwhqihlp3hvraqzz54shjddqwjsr7a029bmd1pv"; depends=[BiocParallel ggforce ggplot2 igraph IRanges Matrix reshape S4Vectors SingleCellExperiment SummarizedExperiment]; }; - scMAGeCK = derive2 { name="scMAGeCK"; version="1.4.0"; sha256="1pya8hlfm7s4sjd9b4sz7nwk1ci2zw4na6q9mrb07fa4j5d1hbcn"; depends=[Seurat]; }; - scMerge = derive2 { name="scMerge"; version="1.8.0"; sha256="1gp5x3vac0yp6qhcikkrvip0n2b17gmkl4vng0rz4zcr2isdrmpv"; depends=[BiocParallel BiocSingular cluster DelayedArray DelayedMatrixStats distr igraph M3Drop pdist proxy ruv S4Vectors SingleCellExperiment SummarizedExperiment]; }; - scPCA = derive2 { name="scPCA"; version="1.6.2"; sha256="0n2hf4bx36j7y02r4m0q29c1d42dlkqc9h98d0y9mvjd51z0vmnn"; depends=[assertthat BiocParallel cluster coop DelayedArray dplyr elasticnet kernlab Matrix MatrixGenerics matrixStats origami purrr Rdpack RSpectra ScaledMatrix sparsepca stringr tibble]; }; - scPipe = derive2 { name="scPipe"; version="1.14.0"; sha256="0r2px7ndswbkjls1h4ddaa9lhgxc8y1z8823pvb760jcl9fdijyk"; depends=[AnnotationDbi BiocGenerics biomaRt dplyr GenomicRanges GGally ggplot2 glue hash magrittr MASS mclust org_Hs_eg_db org_Mm_eg_db Rcpp reshape Rhtslib rlang robustbase rtracklayer S4Vectors scales scater SingleCellExperiment stringr SummarizedExperiment testthat zlibbioc]; }; - scRecover = derive2 { name="scRecover"; version="1.8.0"; sha256="0bmyzf5bghyy3ac9pj0hmh0zbcdsp7wrakf8ky0gi6vzpw359szh"; depends=[bbmle BiocParallel doParallel foreach gamlss kernlab MASS Matrix penalized preseqR pscl Rmagic rsvd SAVER]; }; - scRepertoire = derive2 { name="scRepertoire"; version="1.2.0"; sha256="0vl55zwr7xsy5bq58nkvdk0mp5k53qnvzva1q8973dii6aa8y1sw"; depends=[Biostrings doParallel dplyr ggalluvial ggplot2 plyr powerTCR reshape2 rlang stringr SummarizedExperiment vegan]; }; - scTGIF = derive2 { name="scTGIF"; version="1.6.0"; sha256="0m73b2ixwknsdvarskbg0s9wb6kabcn8zjds6pafd0xblsam4r1f"; depends=[Biobase BiocStyle ggplot2 GSEABase igraph knitr msigdbr nnTensor plotly RColorBrewer Rcpp rmarkdown S4Vectors scales schex SingleCellExperiment SummarizedExperiment tagcloud tibble]; }; - scTHI = derive2 { name="scTHI"; version="1.4.0"; sha256="0ahjiicpxwg6jrf2jgq8hkfja8ri4w20zvdhn9w9f3h51irlpymg"; depends=[BiocParallel Rtsne]; }; - scTensor = derive2 { name="scTensor"; version="2.2.0"; sha256="03pdjmwdcylbvn03qyjirw2hsizlgmh200rb71fkza5z4qs1c2yx"; depends=[abind AnnotationDbi AnnotationHub BiocManager BiocStyle Category checkmate crayon DOSE ggplot2 GOstats heatmaply igraph knitr MeSHDbi meshr nnTensor outliers plotly plotrix reactome_db ReactomePA rmarkdown RSQLite rTensor S4Vectors schex SingleCellExperiment SummarizedExperiment tagcloud visNetwork]; }; - scater = derive2 { name="scater"; version="1.20.1"; sha256="1046fgf93dda3y2z5ilrjdczz7klj67ag63p4p1h03965wpj9vfn"; depends=[beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats ggbeeswarm ggplot2 gridExtra Matrix RColorBrewer rlang Rtsne S4Vectors scuttle SingleCellExperiment SummarizedExperiment viridis]; }; - scde = derive2 { name="scde"; version="2.20.0"; sha256="09pdxbafnkjb2lydi41p8shf9jrva5nl4jldm5y8gp2g7kxnr5wv"; depends=[BiocParallel Cairo edgeR extRemes flexmix MASS mgcv nnet pcaMethods quantreg RColorBrewer Rcpp RcppArmadillo rjson RMTstat Rook]; }; - scds = derive2 { name="scds"; version="1.8.0"; sha256="001y6jlqi5nrfblwfl958jj5f34rzsmil0jicinx6rn8yxp02xl5"; depends=[dplyr Matrix pROC S4Vectors SingleCellExperiment SummarizedExperiment xgboost]; }; - schex = derive2 { name="schex"; version="1.6.3"; sha256="0fvyan2sisn1nqa87wn8xx8ip9c9kz4fc92p1fzdl5xshli8qcka"; depends=[cluster concaveman dplyr entropy ggforce ggplot2 hexbin scales Seurat shiny SingleCellExperiment]; }; - scmap = derive2 { name="scmap"; version="1.14.0"; sha256="1m7iy7y089az9r34lrx06vq34ygpf7by1y5011f7w9xp1rjf6yxj"; depends=[Biobase BiocGenerics dplyr e1071 ggplot2 googleVis matrixStats proxy randomForest Rcpp RcppArmadillo reshape2 S4Vectors SingleCellExperiment SummarizedExperiment]; }; - scmeth = derive2 { name="scmeth"; version="1.12.0"; sha256="0mirify0s552psnfam5vc6w4nxwj73zyiasr6fmbsrg3bqp9dj6x"; depends=[AnnotationHub annotatr Biostrings BSgenome bsseq DelayedArray DT GenomeInfoDb GenomicRanges HDF5Array knitr reshape2 rmarkdown SummarizedExperiment]; }; - scone = derive2 { name="scone"; version="1.16.1"; sha256="0zw8g4mql7b02xqwhc1i0bnhm20c1q9xqc7yz84j98pqbi996vi5"; depends=[aroma_light BiocParallel boot class cluster compositions diptest edgeR fpc gplots hexbin limma MatrixGenerics matrixStats mixtools rARPACK RColorBrewer rhdf5 RUVSeq SingleCellExperiment SummarizedExperiment]; }; - scoreInvHap = derive2 { name="scoreInvHap"; version="1.14.0"; sha256="0j8cgjrslyylnk9l027ydskx8wl7f7xgnngk7g45j2iq3km5kxxi"; depends=[BiocParallel Biostrings GenomicRanges snpStats SummarizedExperiment VariantAnnotation]; }; - scp = derive2 { name="scp"; version="1.2.0"; sha256="14mc1l35vdzy6z3vnvm2mb598qh7p1izrns9mfkwa91zci4528rg"; depends=[dplyr magrittr matrixStats MsCoreUtils MultiAssayExperiment QFeatures rlang S4Vectors SingleCellExperiment SummarizedExperiment]; }; - scran = derive2 { name="scran"; version="1.20.1"; sha256="0ilzp6ngw9pq88gk79iic2zxfh5jaic6lnq3xfwc9a269bjylff0"; depends=[beachmat BH BiocGenerics BiocParallel BiocSingular bluster DelayedArray DelayedMatrixStats dqrng edgeR igraph limma Matrix metapod Rcpp S4Vectors scuttle SingleCellExperiment statmod SummarizedExperiment]; }; - scruff = derive2 { name="scruff"; version="1.10.0"; sha256="0p60lzj51yp1p67b8y4xlqj9gh3z9sn53czdld4bvnqwzgwq5fnq"; depends=[AnnotationDbi BiocGenerics BiocParallel Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 ggthemes plyr Rsamtools Rsubread rtracklayer S4Vectors scales ShortRead SingleCellExperiment stringdist SummarizedExperiment]; }; - scry = derive2 { name="scry"; version="1.4.0"; sha256="1lw5zqi8rygk3455ahilmcd75pidvjff45fryjbc9bkh935r3ish"; depends=[BiocSingular DelayedArray glmpca HDF5Array Matrix SingleCellExperiment SummarizedExperiment]; }; - scuttle = derive2 { name="scuttle"; version="1.2.1"; sha256="015k879gg2r39lp6mz26jwmysa56k0ial6v74zzmbi8hnz9zic3i"; depends=[beachmat BiocGenerics BiocParallel DelayedArray DelayedMatrixStats GenomicRanges Matrix Rcpp S4Vectors SingleCellExperiment SummarizedExperiment]; }; - sechm = derive2 { name="sechm"; version="1.0.0"; sha256="1fs18d7w277cz7vabfg4p4jmz7hmz61idi22cn9x0qdb2qy7lqas"; depends=[circlize ComplexHeatmap randomcoloR S4Vectors seriation SummarizedExperiment]; }; - segmentSeq = derive2 { name="segmentSeq"; version="2.26.0"; sha256="1fqv0k3hhrm3779sk0vzhmrz2r39zj5x8lzaiwfqamim0s4zvqgr"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors ShortRead]; }; - selectKSigs = derive2 { name="selectKSigs"; version="1.4.0"; sha256="04g0hrcc0kqlkj3f31yd9fxq216r5jknvbfn1x2153s0v11i7ys9"; depends=[gtools HiLDA magrittr Rcpp]; }; - semisup = derive2 { name="semisup"; version="1.16.0"; sha256="19cvnbshk6qyxb001m2nrzlnc5v1n3lcpr79bka0lavmsi1wqa62"; depends=[VGAM]; }; - seq2pathway = derive2 { name="seq2pathway"; version="1.24.0"; sha256="1wa1aqczdjw03q77j923xwk32ljlqawnwl6z1vddmz731fk1ddpz"; depends=[biomaRt GenomicRanges GSA nnet seq2pathway_data WGCNA]; }; - seqCAT = derive2 { name="seqCAT"; version="1.14.1"; sha256="0jqam3msr64w1frmh5wgiqx1msnl1f3cj2ycs5ks1mszga89w3d3"; depends=[dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges rlang rtracklayer S4Vectors scales SummarizedExperiment tidyr VariantAnnotation]; }; - seqCNA = derive2 { name="seqCNA"; version="1.38.0"; sha256="07n21a6ini41yalhab049xi7ibx7nbp7pjyvpngqjjjnfy8z6l2k"; depends=[adehabitatLT doSNOW GLAD seqCNA_annot]; }; - seqLogo = derive2 { name="seqLogo"; version="1.58.0"; sha256="1253sj1hc6bbrff0iv5xa3v9znqvisll0fy6fdjka9c778fn4mcp"; depends=[]; }; - seqPattern = derive2 { name="seqPattern"; version="1.24.0"; sha256="0h74z84zyvfzclsm0g13b95hirn99185wc6lp53jkzah9yyi59ay"; depends=[Biostrings GenomicRanges IRanges KernSmooth plotrix]; }; - seqTools = derive2 { name="seqTools"; version="1.26.0"; sha256="08fy8df61xcig4365blnsddc0ywmdv9pmflvdb2ibnpp4480m8i6"; depends=[zlibbioc]; }; - seqbias = derive2 { name="seqbias"; version="1.40.0"; sha256="06w43plv4x1pafybq633n7adqp9yj3bvaaamq7vylmkfbcx3nl8k"; depends=[Biostrings GenomicRanges Rhtslib]; }; - seqcombo = derive2 { name="seqcombo"; version="1.14.1"; sha256="1cbp56nh5gz92napg82vh8gs3vlrj92xqggf5j6v30hw1hd7q7lp"; depends=[Biostrings cowplot dplyr ggplot2 igraph magrittr yulab_utils]; }; - seqsetvis = derive2 { name="seqsetvis"; version="1.12.0"; sha256="1gviian0xykia1xh42w5r202nlm03hpkfgnc4yabalmv4zmwndh8"; depends=[data_table eulerr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 ggplotify IRanges limma pbapply pbmcapply png RColorBrewer Rsamtools rtracklayer S4Vectors UpSetR]; }; - sesame = derive2 { name="sesame"; version="1.10.5"; sha256="1y20lc9g31j9cqd11v2dd8lwx0476cgiwfzdka7y6qwlkqi9jwdw"; depends=[BiocParallel DNAcopy GenomicRanges ggplot2 illuminaio IRanges KernSmooth MASS matrixStats preprocessCore randomForest S4Vectors sesameData stringr SummarizedExperiment tibble wheatmap]; }; - sevenC = derive2 { name="sevenC"; version="1.12.0"; sha256="0gwvjf1zmkr6j9id1wm5f2abnrm9anby8xbcr17fbkchzas0kw03"; depends=[BiocGenerics boot data_table GenomeInfoDb GenomicRanges InteractionSet IRanges purrr readr rtracklayer S4Vectors]; }; - sevenbridges = derive2 { name="sevenbridges"; version="1.22.0"; sha256="1pa1hhfvnsdkgyv6qh7bg3fzbvcmccr7km877vgqhlpgfir10ig2"; depends=[curl data_table docopt httr jsonlite objectProperties S4Vectors stringr uuid yaml]; }; - shinyMethyl = derive2 { name="shinyMethyl"; version="1.28.0"; sha256="0b5i9anjz02k98zam29hixhrxbak0ghfbv00jj4041cbs42dkaja"; depends=[BiocGenerics IlluminaHumanMethylation450kmanifest matrixStats minfi RColorBrewer shiny]; }; - shinyepico = derive2 { name="shinyepico"; version="1.0.0"; sha256="0hdga4mqrdfhbcmhkmc1k45xhnwqnxnn14lhnz6zlbf4pawi1jb4"; depends=[data_table doParallel dplyr DT foreach GenomicRanges ggplot2 gplots heatmaply limma minfi plotly reshape2 rlang rmarkdown rtracklayer shiny shinycssloaders shinyjs shinythemes shinyWidgets statmod tidyr zip]; }; - sigFeature = derive2 { name="sigFeature"; version="1.10.0"; sha256="0v5g5lz1nl78dy1fgywn4gsb621xw0lb3phf8jvfj84m70g7wwns"; depends=[BiocParallel biocViews e1071 Matrix nlme openxlsx pheatmap RColorBrewer SparseM SummarizedExperiment]; }; - sigPathway = derive2 { name="sigPathway"; version="1.60.0"; sha256="1xz5nbw5dzyah8az7mpwj8m27fsvpi2jjhfg3n27dsv8rvdncqi8"; depends=[]; }; - siggenes = derive2 { name="siggenes"; version="1.66.0"; sha256="0lva0f255fcpy625frvij4n14q7nw4jcx8n2hlkxid4mgkfqwlhf"; depends=[Biobase multtest scrime]; }; - sights = derive2 { name="sights"; version="1.18.0"; sha256="0dzmikqfxypbhq5zax4yfr2m0bal79raq7ggrg8m2crqda6020i6"; depends=[ggplot2 lattice MASS qvalue reshape2]; }; - signatureSearch = derive2 { name="signatureSearch"; version="1.6.3"; sha256="1c63a9l5rlvjn6v7cxk136kvng4rbmvlg5jdzz0zsi48vipwhm4f"; depends=[AnnotationDbi BiocGenerics BiocParallel clusterProfiler data_table DelayedArray DOSE dplyr ExperimentHub fastmatch fgsea ggplot2 GSEABase HDF5Array magrittr Matrix qvalue Rcpp reactome_db readr reshape2 rhdf5 RSQLite scales SummarizedExperiment visNetwork]; }; - signeR = derive2 { name="signeR"; version="1.18.1"; sha256="18arsfdnmjqv9g70j2d1kw2k2dlk55sy7r0jq9hwf545q7sn5fwi"; depends=[BiocGenerics Biostrings class GenomeInfoDb GenomicRanges IRanges nloptr NMF PMCMRplus Rcpp RcppArmadillo VariantAnnotation]; }; - sigsquared = derive2 { name="sigsquared"; version="1.24.0"; sha256="0awb5k9k459jnmb3rr08407w95r65ip50kgqffpdn9qqrjdimgva"; depends=[Biobase survival]; }; - similaRpeak = derive2 { name="similaRpeak"; version="1.24.0"; sha256="1hhzzidva3z9z1mj5j75mhgns8j7nhn0gnhjdpwmz25c0hc5n5l1"; depends=[R6]; }; - simplifyEnrichment = derive2 { name="simplifyEnrichment"; version="1.2.0"; sha256="0rqa414kvyjjmj4932zk39rqa14z13b57rkrxdrf16jmq2r437vh"; depends=[AnnotationDbi BiocGenerics circlize clue cluster ComplexHeatmap digest GetoptLong GO_db GOSemSim Matrix org_Hs_eg_db proxyC slam tm]; }; - sincell = derive2 { name="sincell"; version="1.24.0"; sha256="140xcarald9pdfp45y84317wzx2cicq4sh3zyn3i563chhi2xqir"; depends=[cluster entropy fastICA fields ggplot2 igraph MASS proxy Rcpp reshape2 Rtsne scatterplot3d statmod TSP]; }; - singleCellTK = derive2 { name="singleCellTK"; version="2.2.0"; sha256="1qdf57mj0hx30zzci0hhvahhqcx2mbq3g7q4vc4mggsxxm0j0r4l"; depends=[AnnotationDbi ape batchelor Biobase BiocParallel celda celldex circlize cluster colorspace colourpicker ComplexHeatmap cowplot data_table DelayedArray DelayedMatrixStats DESeq2 dplyr DropletUtils DT enrichR ExperimentHub fields fishpond ggplot2 ggplotify ggrepel ggtree gridExtra GSEABase GSVA GSVAdata igraph KernSmooth limma magrittr MAST Matrix matrixStats metap msigdbr multtest plotly R_utils RColorBrewer reshape2 reticulate rmarkdown ROCR Rtsne S4Vectors scater scDblFinder scds scMerge scran scRNAseq Seurat shiny shinyalert shinycssloaders shinyjs SingleCellExperiment SingleR SummarizedExperiment sva TENxPBMCData tximport uwot withr yaml zinbwave]; }; - singscore = derive2 { name="singscore"; version="1.12.0"; sha256="16d452s6527xwxsfbfqxjnyn8ifx4lfqfrfkv516w1rs28qnpri3"; depends=[Biobase BiocParallel edgeR ggplot2 ggrepel GSEABase magrittr matrixStats plotly plyr RColorBrewer reshape reshape2 S4Vectors SummarizedExperiment tidyr]; }; - sitadela = derive2 { name="sitadela"; version="1.0.1"; sha256="0zslaw3yvavypc7lkwcz6nxcwhgp86f9gcjjv0hn43zhxwzbyal7"; depends=[Biobase BiocGenerics biomaRt Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges Rsamtools RSQLite rtracklayer S4Vectors]; }; - sitePath = derive2 { name="sitePath"; version="1.8.4"; sha256="10syb7nrl83psy1lz06jpy96j1h4mgc8hrrhhikqcb4zqd7x14js"; depends=[ape aplot ggplot2 ggrepel ggtree gridExtra RColorBrewer Rcpp seqinr tidytree]; }; - sizepower = derive2 { name="sizepower"; version="1.62.0"; sha256="1025yfziv9znd278xz7cq8c17nhf5kwrf82nxx2s9pf0zhnh18sp"; depends=[]; }; - skewr = derive2 { name="skewr"; version="1.24.0"; sha256="194bhbv2y90wzqdb4axqq4qg6cihjbz3nvnkfpb82mbh8cai1l0f"; depends=[IlluminaHumanMethylation450kmanifest methylumi minfi mixsmsn RColorBrewer S4Vectors wateRmelon]; }; - slalom = derive2 { name="slalom"; version="1.14.0"; sha256="12majjfp8bm4wyjfw9j1v9gxkwsinnk18bv941j6dz9srmby27ff"; depends=[BH ggplot2 GSEABase Rcpp RcppArmadillo rsvd SingleCellExperiment SummarizedExperiment]; }; - slingshot = derive2 { name="slingshot"; version="2.0.0"; sha256="1aqsz2kxwax8d8d5iv3zk5hlyk5aya1wbxs1wky2rgccw4d35whx"; depends=[igraph matrixStats princurve S4Vectors SingleCellExperiment SummarizedExperiment TrajectoryUtils]; }; - slinky = derive2 { name="slinky"; version="1.10.0"; sha256="17v1zdgvbpg1wv8l8v2magcvjq6968glh6d7v5zsda08z4v0np5z"; depends=[curl dplyr foreach httr jsonlite readr rhdf5 SummarizedExperiment tidyr]; }; - snapCGH = derive2 { name="snapCGH"; version="1.62.0"; sha256="1aih6k76rlpvgq9vxdnm6iln79v7hlrpvlrk5q2q4a1k2psp35zg"; depends=[aCGH cluster DNAcopy GLAD limma tilingArray]; }; - snapcount = derive2 { name="snapcount"; version="1.4.0"; sha256="1367gw06fy937gjxbhbf8r0ff6k6aigxdx4s1xdh7qi602bfwvav"; depends=[assertthat data_table GenomicRanges httr IRanges jsonlite magrittr Matrix purrr R6 rlang stringr SummarizedExperiment]; }; - snifter = derive2 { name="snifter"; version="1.2.0"; sha256="02mc4r9ajpascyqxgw8rc0x23c76b5b9caaxq4w3fi0s950jm3hz"; depends=[assertthat basilisk reticulate]; }; - snm = derive2 { name="snm"; version="1.40.0"; sha256="1a2y4k22lk3l60bm411b44kn8pj9ksyvi23vqxcb49idip4drj9x"; depends=[corpcor lme4]; }; - snpStats = derive2 { name="snpStats"; version="1.42.0"; sha256="11vvih5y9kvyjfp2navkfpp4xiyfgwlv4r0x3p52hkj92pc2pg3g"; depends=[BiocGenerics Matrix survival zlibbioc]; }; - soGGi = derive2 { name="soGGi"; version="1.24.1"; sha256="19m0krfx2v4ylhdq7rxrddy40rlmirqma7ynl6y2kmq0h8m8p26x"; depends=[BiocGenerics BiocParallel Biostrings chipseq GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges preprocessCore reshape2 Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; - sojourner = derive2 { name="sojourner"; version="1.6.0"; sha256="0h4nx0v69kxwlis8wm27d5ddvjyjw6kjb73hflmvzl16dy7d6dxr"; depends=[dplyr EBImage fitdistrplus ggplot2 gridExtra lattice MASS mclust minpack_lm mixtools mltools nls2 pixmap plyr R_matlab Rcpp reshape2 rlang sampSurf scales shiny shinyjs sp truncnorm]; }; - sparseDOSSA = derive2 { name="sparseDOSSA"; version="1.16.0"; sha256="1vwbma8qidydy88ryqjk936cznliqnkklrra5cvyfgsl4qhl7a8h"; depends=[MASS MCMCpack optparse tmvtnorm]; }; - sparseMatrixStats = derive2 { name="sparseMatrixStats"; version="1.4.2"; sha256="0b22kzg751zlkcbs8pi0bcqrsj3imsg35qfvxfrqb7gav7qznc8v"; depends=[Matrix MatrixGenerics matrixStats Rcpp]; }; - sparsenetgls = derive2 { name="sparsenetgls"; version="1.10.0"; sha256="0kzkbpw6msxka34zixz8pi0vi2zigi3j9ff6cxg72j1fkxhv41az"; depends=[glmnet huge MASS Matrix]; }; - spatialHeatmap = derive2 { name="spatialHeatmap"; version="1.2.0"; sha256="0c0mhdyzaak9jjvanb8ghn2y1vm2g328hmm7xjl04vly1ka5h17i"; depends=[av BiocFileCache data_table DESeq2 dynamicTreeCut edgeR flashClust genefilter ggdendro ggplot2 ggplotify gplots gridExtra grImport HDF5Array htmlwidgets igraph plotly rappdirs rols rsvg S4Vectors shiny shinydashboard SummarizedExperiment visNetwork WGCNA xml2 yaml]; }; - specL = derive2 { name="specL"; version="1.26.0"; sha256="1p1g91lpn1vkn3qvpd1vaj6mlngkybw9bvc4zdmha7qm41s12dkl"; depends=[DBI protViz RSQLite seqinr]; }; - spicyR = derive2 { name="spicyR"; version="1.4.0"; sha256="0gwa7amz3rw7p99rc4wpj79xmlcdr59x5ar0yg5jkxp8fpnwjanh"; depends=[BiocGenerics BiocParallel concaveman data_table dplyr ggplot2 IRanges lme4 lmerTest mgcv pheatmap rlang S4Vectors spatstat_core spatstat_geom tidyr]; }; - spikeLI = derive2 { name="spikeLI"; version="2.52.0"; sha256="0i2d4k6gng4h61k9l5s8myhi48p3svm54n8p177x9fyjh5d0wq5c"; depends=[]; }; - spkTools = derive2 { name="spkTools"; version="1.48.0"; sha256="0qpgjly7rq7dn762x5lggiyy553928kdyv5d5yf661hg5p6zr8k1"; depends=[Biobase gtools RColorBrewer]; }; - splatter = derive2 { name="splatter"; version="1.16.1"; sha256="1cps1l60qg1cirh453lkb69jdzhai6ap1maylrfs1izs5fz27wzi"; depends=[BiocGenerics BiocParallel checkmate crayon edgeR fitdistrplus ggplot2 locfit matrixStats S4Vectors scales scater SingleCellExperiment SummarizedExperiment]; }; - splineTimeR = derive2 { name="splineTimeR"; version="1.20.0"; sha256="1d4i7cjqy6m0lng6lkhjvmqad1jdan8wpv5c0igl0kg5659bc2hq"; depends=[Biobase FIs GeneNet GSEABase gtools igraph limma longitudinal]; }; - splots = derive2 { name="splots"; version="1.58.0"; sha256="1lwpap41k27zl23212ncc4mpaf4vwaz419zkahgh8472sb9ypkaz"; depends=[RColorBrewer]; }; - spqn = derive2 { name="spqn"; version="1.4.0"; sha256="1cxclv0w5sa0p7dm03am70x9m03qvxy7x96x4flhd3511x4gvj0q"; depends=[BiocGenerics ggplot2 ggridges matrixStats SummarizedExperiment]; }; - srnadiff = derive2 { name="srnadiff"; version="1.12.2"; sha256="1g2lh459biabl0z7vacm5mnwmwcrb1ra5i3sgmpfkrmgzimc49ff"; depends=[baySeq BiocManager BiocParallel BiocStyle DESeq2 devtools edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Gviz IRanges Rcpp Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; - ssPATHS = derive2 { name="ssPATHS"; version="1.6.0"; sha256="15x1ysbn2qv03wy6avmnnl3r38mq4372sxjr0zz4gb6fdh5h5bnn"; depends=[dml MESS ROCR SummarizedExperiment]; }; - sscore = derive2 { name="sscore"; version="1.64.0"; sha256="13bp1vzx93wra25cnb4ilvz7ckj1c1k3rh5wxsas6hq9lfkk2j0i"; depends=[affy affyio]; }; - sscu = derive2 { name="sscu"; version="2.22.0"; sha256="0v0kb6kpy75n57qklssjfmdp2mas5rpd4jhavvv00vqhhns13ay3"; depends=[BiocGenerics Biostrings seqinr]; }; - ssize = derive2 { name="ssize"; version="1.66.0"; sha256="1jzvmqx08yl78xhqr9sv93gd78as3s1nf26kvasswgxyl3szakdp"; depends=[gdata xtable]; }; - ssrch = derive2 { name="ssrch"; version="1.8.1"; sha256="046j8js3vdxl1gfn8g3d5mf6ixqffzniazwmn6kcdj2m4z6icpvg"; depends=[DT shiny]; }; - ssviz = derive2 { name="ssviz"; version="1.26.0"; sha256="17asjmqd0dv14jfrj0xj4nd5p6k2z0ky662xnngr1d05sykx8pdz"; depends=[Biostrings ggplot2 RColorBrewer reshape Rsamtools]; }; - staRank = derive2 { name="staRank"; version="1.34.0"; sha256="1y4vfwp6j9chk8ld2jcx8divhmlpp3f3ccpwzad3whrfn78px7cv"; depends=[cellHTS2]; }; - stageR = derive2 { name="stageR"; version="1.14.0"; sha256="1hlwhnf0vavrgbs4222w1avl8j3qasz5dkbjxfbicmr84g1fx823"; depends=[SummarizedExperiment]; }; - statTarget = derive2 { name="statTarget"; version="1.22.0"; sha256="0jaczdg8q9w36325h08z5plf6a4n6mkc8wj5hsfgj29pwqbj607v"; depends=[impute pdist pls plyr randomForest ROC rrcov]; }; - stepNorm = derive2 { name="stepNorm"; version="1.64.0"; sha256="01c3zv6ckayi1j3bppcc1dad8qdmkx7gf5awmrki3f8nq3zqznph"; depends=[marray MASS]; }; - strandCheckR = derive2 { name="strandCheckR"; version="1.10.0"; sha256="14nvpryrghcv0yvfhj035n9fymdjfpimjxcksxvk26f91yf0zlw7"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges magrittr reshape2 Rsamtools S4Vectors stringr TxDb_Hsapiens_UCSC_hg38_knownGene]; }; - struct = derive2 { name="struct"; version="1.4.0"; sha256="09f68qbiyha2gc4lad9yv07r8fv5hyckqia6gjnzxs05x646rxjb"; depends=[knitr ontologyIndex S4Vectors SummarizedExperiment]; }; - structToolbox = derive2 { name="structToolbox"; version="1.4.3"; sha256="10aq9605xir4s1m1391909xzq9k41c35ddn34njyhnh26i3zql1x"; depends=[ggplot2 ggthemes gridExtra scales sp struct]; }; - subSeq = derive2 { name="subSeq"; version="1.22.0"; sha256="0kdqlfzwjp1d8i4f1hxamc9k0m8hsnj587jxl6nwfar3vx0rvpid"; depends=[Biobase data_table digest dplyr ggplot2 magrittr qvalue tidyr]; }; - supersigs = derive2 { name="supersigs"; version="1.0.0"; sha256="12z42xsm6jpn31dbraj9k65f8yqmh2qcwsf7ppiqmn025g2h4li1"; depends=[assertthat Biostrings caret dplyr rlang rsample SummarizedExperiment tidyr]; }; - supraHex = derive2 { name="supraHex"; version="1.30.0"; sha256="0xdfpwjwwmvi1vi7g9i6zkp7n08vagz2hzpkm487826hj4z3dn64"; depends=[ape dplyr hexbin igraph magrittr MASS purrr readr stringr tibble tidyr]; }; - survcomp = derive2 { name="survcomp"; version="1.42.0"; sha256="0d9pm3idqig9ksw4sfm4g9b8fwv24lhy8qqcqbqf0gav9ij39wzc"; depends=[bootstrap ipred KernSmooth prodlim rmeta SuppDists survival survivalROC]; }; - survtype = derive2 { name="survtype"; version="1.8.0"; sha256="1yfkkcbnv09dgba1xll86fmjq9m4ryyyi8idsqgvd6qhf3pb9wbr"; depends=[clustvarsel pheatmap SummarizedExperiment survival survminer]; }; - sva = derive2 { name="sva"; version="3.40.0"; sha256="12jkcybdfspabh7x124d44l9fj1hwwg3gvcqxvz5wpkiflc2vkji"; depends=[BiocParallel edgeR genefilter limma matrixStats mgcv]; }; - swfdr = derive2 { name="swfdr"; version="1.18.0"; sha256="0mqc28s0kw87d93m8z9xkh81s8j6y18ggkdgx48iil5adw8rfs00"; depends=[]; }; - switchBox = derive2 { name="switchBox"; version="1.28.0"; sha256="10zriwb306rd9lnw8vxqgwx4cj40j8dv9z4dx7ba3b78rrhj67kz"; depends=[gplots pROC]; }; - switchde = derive2 { name="switchde"; version="1.18.0"; sha256="1rq2ccw1byz87g6425h1wfmzn4crl0jfn56d4ns7gxsw32jj4258"; depends=[dplyr ggplot2 SingleCellExperiment SummarizedExperiment]; }; - synergyfinder = derive2 { name="synergyfinder"; version="3.0.14"; sha256="01n26iqrn4ngx8xkzml5ahzgg3c4s9q05c6gi4lm40x30d57gk1i"; depends=[dplyr drc furrr future ggforce ggplot2 ggrepel gstat kriging lattice magrittr metR mice nleqslv pbapply plotly purrr reshape2 sp SpatialExtremes stringr tidyr tidyverse vegan]; }; - synlet = derive2 { name="synlet"; version="1.22.0"; sha256="197j5dw8ginr7rhiv8fwcixm5bf9gbbjnzqkvgjm3wd8803fhx5k"; depends=[doBy dplyr ggplot2 magrittr RankProd RColorBrewer reshape2]; }; - systemPipeR = derive2 { name="systemPipeR"; version="1.26.3"; sha256="01l35l5zj87qkarrbal9la6kshk3j7k8hy3iimv3gdnnz4axmvs7"; depends=[annotate assertthat batchtools Biostrings crayon DESeq2 DOT edgeR GenomicFeatures GenomicRanges ggplot2 GO_db GOstats IRanges limma magrittr pheatmap rjson Rsamtools rsvg S4Vectors ShortRead stringr SummarizedExperiment testthat VariantAnnotation yaml]; }; - systemPipeShiny = derive2 { name="systemPipeShiny"; version="1.2.0"; sha256="1s4ammnfs70x6apz1r83qaj9p9f5ppiv1z3n76jc71bd7gab1lym"; depends=[assertthat bsplus crayon dplyr drawer DT ggplot2 glue htmltools magrittr openssl plotly R6 rlang RSQLite rstudioapi shiny shinyAce shinydashboard shinydashboardPlus shinyFiles shinyjqui shinyjs shinytoastr shinyWidgets spsComps spsUtil stringr styler tibble vroom yaml]; }; - systemPipeTools = derive2 { name="systemPipeTools"; version="1.0.0"; sha256="1d7ykaq4c80dhfq3ljnjpl2f8c1a7yqd0mf5k4c2gdh4jfzypf0s"; depends=[ape DESeq2 dplyr DT GGally ggplot2 ggrepel ggtree glmpca magrittr pheatmap plotly Rtsne SummarizedExperiment tibble]; }; - tLOH = derive2 { name="tLOH"; version="1.0.0"; sha256="1vbdsnm5r8d9gwgk7klwmgg579q5m9vwh1r6x2027y76547wzzpl"; depends=[data_table dplyr GenomicRanges ggplot2 MatrixGenerics purrr scales VariantAnnotation]; }; - tRNA = derive2 { name="tRNA"; version="1.10.0"; sha256="0q3ngh4kjbwyaax4r6bagc7phkxvymvvmvps47xb99cjdgfsk47p"; depends=[BiocGenerics Biostrings GenomicRanges ggplot2 IRanges Modstrings S4Vectors scales stringr Structstrings XVector]; }; - tRNAdbImport = derive2 { name="tRNAdbImport"; version="1.10.0"; sha256="0lp110pa6rylyv771hfsrpj4cqsqdff67ky50x140j1kv4d41fkw"; depends=[BiocGenerics Biostrings GenomicRanges httr IRanges Modstrings S4Vectors stringr Structstrings tRNA xml2]; }; - tRNAscanImport = derive2 { name="tRNAscanImport"; version="1.12.0"; sha256="1d5mzngrajykj4ras3z307n72nf5zwqdz6jabx1k201l4vanrr6b"; depends=[BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Rsamtools rtracklayer S4Vectors stringr Structstrings tRNA XVector]; }; - tRanslatome = derive2 { name="tRanslatome"; version="1.30.0"; sha256="1l2s08nrd403hiiy080hd0946vkyjvl4z22ya8m2xipc13hrv59v"; depends=[anota Biobase DESeq2 edgeR GOSemSim gplots Heatplus limma org_Hs_eg_db plotrix RankProd sigPathway topGO]; }; - target = derive2 { name="target"; version="1.6.0"; sha256="132n4jfbhf50xkdfq2gs9fl30znkmhb0qq99fydywlhas2qw8n7n"; depends=[BiocGenerics GenomicRanges IRanges matrixStats shiny]; }; - tenXplore = derive2 { name="tenXplore"; version="1.14.2"; sha256="0b1n3jnrrp4s6msvqiyv1a4fh1yvswh76z85hnh52rbr6ba65xbh"; depends=[AnnotationDbi matrixStats ontoProc org_Mm_eg_db restfulSE shiny SummarizedExperiment]; }; - ternarynet = derive2 { name="ternarynet"; version="1.36.0"; sha256="1fgbsvc5q9zmgdpcc4lyc1kq54sq39xc11mz29k4kl470r7ld5l2"; depends=[BiocParallel igraph]; }; - tidySingleCellExperiment = derive2 { name="tidySingleCellExperiment"; version="1.2.1"; sha256="1nin31l3p7xzbhxq8haq5l8zfg62j9hk2sgvmnffkd9sh76k7dia"; depends=[cli dplyr ellipsis fansi ggplot2 lifecycle magrittr pillar plotly purrr rlang S4Vectors SingleCellExperiment stringr SummarizedExperiment tibble tidyr tidyselect]; }; - tidySummarizedExperiment = derive2 { name="tidySummarizedExperiment"; version="1.2.0"; sha256="1y5gcyn2kaq3xvvj5m1c6744lc12i86p60b5q3h7vvffp1lh3lvd"; depends=[cli dplyr ellipsis fansi ggplot2 lifecycle magrittr pillar plotly purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr tidyselect]; }; - tidybulk = derive2 { name="tidybulk"; version="1.4.0"; sha256="0r1nrpzjhnrkk7karcjja763yph8kwck2r1ksg8nqdmxhrpa5fwd"; depends=[dplyr lifecycle magrittr preprocessCore purrr readr rlang scales stringr SummarizedExperiment tibble tidyr]; }; - tigre = derive2 { name="tigre"; version="1.46.0"; sha256="01x7snnp2d9cl1322z5i4am96zc5pxj3b9d7l467cr0w27s199gf"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI gplots RSQLite]; }; - tilingArray = derive2 { name="tilingArray"; version="1.70.0"; sha256="11k1x2p44knvk6yvyf5macidxbnhb8m7j7s8axhdyiclpfii7wlr"; depends=[affy Biobase genefilter pixmap RColorBrewer strucchange vsn]; }; - timeOmics = derive2 { name="timeOmics"; version="1.4.0"; sha256="1xhlwd6l15bc00jsg4c85ji9zgfch3400z0qfpl7as1ipr5j2kxy"; depends=[dplyr ggplot2 ggrepel lmtest magrittr mixOmics plyr propr purrr stringr tibble tidyr]; }; - timecourse = derive2 { name="timecourse"; version="1.64.0"; sha256="1y2j23lalb9vyifm6dzd3pclpjyhcgmg34215nzyympqrhxi28mg"; depends=[Biobase limma marray MASS]; }; - timescape = derive2 { name="timescape"; version="1.16.0"; sha256="0m13d4fsxpifg2di3q6qg6c92f6mi6wh53qd8y29z8mk5rr6ijh8"; depends=[dplyr gtools htmlwidgets jsonlite stringr]; }; - tkWidgets = derive2 { name="tkWidgets"; version="1.70.0"; sha256="0pm2bnksqy79smbp06d7vdnziacbfff8ddbn0hr0izxqm118pln9"; depends=[DynDoc widgetTools]; }; - tofsims = derive2 { name="tofsims"; version="1.20.0"; sha256="11widfrg4jrwcahjc0r0ydxjil12z0jjrky62iba4jv6w0q1sfbz"; depends=[ALS alsace KernSmooth ProtGenerics Rcpp RcppArmadillo signal]; }; - tomoda = derive2 { name="tomoda"; version="1.2.0"; sha256="15d1rrhhj527cjgs3j7n16v7myiirhqg4q6mp02mn00s3ygphxhl"; depends=[ggplot2 ggrepel RColorBrewer reshape2 Rtsne SummarizedExperiment umap]; }; - topGO = derive2 { name="topGO"; version="2.44.0"; sha256="1ggi7yrhkyi85p3sfj3yd95n9mzq1xpff28ixa4dl9yzasks1v5a"; depends=[AnnotationDbi Biobase BiocGenerics DBI GO_db graph lattice matrixStats SparseM]; }; - topconfects = derive2 { name="topconfects"; version="1.8.0"; sha256="1vzbqicsvfl7q8s2rn2qrda8xvwb8apxxw2xk29dg2h7kdlai93i"; depends=[assertthat ggplot2]; }; - topdownr = derive2 { name="topdownr"; version="1.14.0"; sha256="1bz1qd3f7sya09hw04spcmph6s6r7ibdzbm7r05z437ki5hflw6n"; depends=[Biobase BiocGenerics Biostrings ggplot2 Matrix MSnbase mzR ProtGenerics S4Vectors]; }; - trackViewer = derive2 { name="trackViewer"; version="1.28.1"; sha256="10mnsqp4ss8s4l67za19xxh9v87d1ncy9ylb972afsvfbj394y39"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph grImport Gviz htmlwidgets InteractionSet IRanges plotrix Rcpp Rgraphviz rhdf5 Rsamtools rtracklayer S4Vectors scales]; }; - tracktables = derive2 { name="tracktables"; version="1.26.0"; sha256="1fl3k63n2pr39vrf8npz1000zfr4y85k0lm8kbnjfq5n8bhnzanv"; depends=[GenomicRanges IRanges RColorBrewer Rsamtools stringr tractor_base XML XVector]; }; - tradeSeq = derive2 { name="tradeSeq"; version="1.6.0"; sha256="0fgmb309pvqf3chdhqgbd4lzhahcj5g71sica33nzn98qhipldx7"; depends=[Biobase BiocParallel edgeR ggplot2 igraph magrittr Matrix matrixStats mgcv monocle pbapply princurve RColorBrewer S4Vectors SingleCellExperiment slingshot SummarizedExperiment tibble viridis]; }; - transcriptR = derive2 { name="transcriptR"; version="1.20.0"; sha256="0xl88fk8i4pnbd7hw4v48awdgr5il1fgml0x7dqb00rgcmjbk5yr"; depends=[BiocGenerics caret chipseq e1071 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges pROC reshape2 Rsamtools rtracklayer S4Vectors]; }; - transcriptogramer = derive2 { name="transcriptogramer"; version="1.14.0"; sha256="18sks1p27qs7vfvs37vdaidj6r7pbwg5479lyv1pycvwgrz1sxwv"; depends=[biomaRt data_table doSNOW foreach ggplot2 igraph limma progress RedeR snow tidyr topGO]; }; - transite = derive2 { name="transite"; version="1.10.0"; sha256="1x8qf28m2hqx0b968wdffy1gm1kffvv08hzm2yy2z7z0kxfj8mm0"; depends=[BiocGenerics Biostrings dplyr GenomicRanges ggplot2 ggseqlogo gridExtra Rcpp scales TFMPvalue]; }; - transomics2cytoscape = derive2 { name="transomics2cytoscape"; version="1.2.2"; sha256="19rpc3s0b1fmslr6jzfij61wipg49820hy63079ns7j0ldxj8zvp"; depends=[dplyr KEGGREST RCy3]; }; - traseR = derive2 { name="traseR"; version="1.22.0"; sha256="197gy5a8zb1mxjhjvpxlpgna9qq1cwlqhd0pjq69vbzjhvhrr643"; depends=[BSgenome_Hsapiens_UCSC_hg19 GenomicRanges IRanges]; }; - treeio = derive2 { name="treeio"; version="1.16.2"; sha256="1y60yvg1rl21cab9xrkns0209pg44mwr90qj099dvk97wsjkx67g"; depends=[ape dplyr jsonlite magrittr rlang tibble tidytree]; }; - treekoR = derive2 { name="treekoR"; version="1.0.0"; sha256="09b7mjf6zaq1gnm9yvd5178v1i137cxlp3bzqgzsll0ipgxrf1av"; depends=[ape data_table dplyr ggiraph ggplot2 ggtree hopach magrittr patchwork SingleCellExperiment tidyr]; }; - trena = derive2 { name="trena"; version="1.14.0"; sha256="1vyv1q48163darxq9xlnib75rh83996xgaj8pqnlrhhyh8qvwwki"; depends=[AnnotationDbi BiocParallel biomaRt Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 DBI GenomicRanges glmnet lassopv MotifDb org_Hs_eg_db randomForest RMySQL RPostgreSQL RSQLite SNPlocs_Hsapiens_dbSNP150_GRCh38 vbsr xgboost]; }; - tricycle = derive2 { name="tricycle"; version="1.0.0"; sha256="19y2q39850nsqbhcqs0jf6mn67v7092vsyqrcxkmr8v0pniyrjz3"; depends=[AnnotationDbi circular dplyr GenomicRanges ggplot2 IRanges RColorBrewer S4Vectors scater scattermore SingleCellExperiment SummarizedExperiment]; }; - trigger = derive2 { name="trigger"; version="1.38.0"; sha256="1ls3j9ws1g59app153asbkhlfy8a589xcpg62cbskqfi13pm5qzl"; depends=[corpcor qtl qvalue sva]; }; - trio = derive2 { name="trio"; version="3.30.0"; sha256="0irbbgfyg843asvfh320kbifjn8gpvkhabzwcw30gz40wqpnjn7p"; depends=[LogicReg siggenes survival]; }; - triplex = derive2 { name="triplex"; version="1.32.0"; sha256="088vd2g9cwyhqlpiw62wq2xip92dc2yy1aw64a6phkgqgpnmir6j"; depends=[Biostrings GenomicRanges IRanges S4Vectors XVector]; }; - tscR = derive2 { name="tscR"; version="1.4.0"; sha256="0bs1rkad0qb4fcpl6wpnik7yzxsh799859kqs4gpj9q63hgf4d27"; depends=[class cluster dplyr dtw GenomicRanges ggplot2 gridExtra IRanges kmlShape knitr latex2exp prettydoc RColorBrewer rmarkdown S4Vectors SummarizedExperiment]; }; - tspair = derive2 { name="tspair"; version="1.50.0"; sha256="1ml60sbcpsrksyl5ih58gf1a17jvl6xxbfwfh0fvxpfcidvlplp3"; depends=[Biobase]; }; - ttgsea = derive2 { name="ttgsea"; version="1.0.0"; sha256="08kgarbaf1dic2vydhr64dvqb6hsgfwshzqqsrp516rdcj55dvi5"; depends=[data_table DiagrammeR keras purrr stopwords text2vec textstem tm tokenizers]; }; - tweeDEseq = derive2 { name="tweeDEseq"; version="1.38.0"; sha256="15vlm7a1p950g4gimwqhij4m6ps2ni4236hvv2jw59ianzfp2fmh"; depends=[cqn edgeR limma MASS]; }; - twilight = derive2 { name="twilight"; version="1.68.0"; sha256="1x9xs9fn4y594mmpjhzzw8i3k46dx8pax087ijsi659q2xqjqsf2"; depends=[Biobase]; }; - twoddpcr = derive2 { name="twoddpcr"; version="1.16.0"; sha256="1kak3b6f7m5524ihca6hgcs9rbwxpn0dplafy5j5m16y0jnliwlx"; depends=[class ggplot2 hexbin RColorBrewer S4Vectors scales shiny]; }; - tximeta = derive2 { name="tximeta"; version="1.10.0"; sha256="0ipgpcl93cac4qff6lp9x2l3gav5kb1x1d56g32h09hlm797rvvh"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings ensembldb GenomeInfoDb GenomicFeatures GenomicRanges IRanges jsonlite Matrix S4Vectors SummarizedExperiment tibble tximport]; }; - tximport = derive2 { name="tximport"; version="1.20.0"; sha256="0ip2yr0zspf2aagskxl4dwncr48dw5qb90an3sswnnh2dqdb82if"; depends=[]; }; - uSORT = derive2 { name="uSORT"; version="1.18.0"; sha256="0pqdh8jk4frqbdxm5lh56zhsarbqvcjwafnjns95zv99gpyc5lyn"; depends=[Biobase BiocGenerics cluster fpc gplots igraph Matrix monocle plyr RANN RSpectra VGAM]; }; - uncoverappLib = derive2 { name="uncoverappLib"; version="1.2.0"; sha256="1c1djx0sqrcrd7hqk1j7mxg0zwfr5mg179qijm46hwyg6sl67m34"; depends=[BiocFileCache BSgenome_Hsapiens_UCSC_hg19 condformat DT EnsDb_Hsapiens_v75 EnsDb_Hsapiens_v86 GenomicRanges Gviz Homo_sapiens markdown openxlsx org_Hs_eg_db OrganismDbi processx rappdirs rlist Rsamtools shiny shinyBS shinycssloaders shinyjs shinyWidgets stringr TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; - unifiedWMWqPCR = derive2 { name="unifiedWMWqPCR"; version="1.28.0"; sha256="1clcz610sl3s0mjf84j21xgrmjhkxcc4h292ljwq5yzbkk68g896"; depends=[BiocGenerics HTqPCR]; }; - universalmotif = derive2 { name="universalmotif"; version="1.10.2"; sha256="0hv2v2zgif5ihr5hxmdz32rln43jc1j0rslp44kd3rijjl45zysn"; depends=[BiocGenerics Biostrings ggplot2 IRanges MASS Rcpp RcppThread rlang S4Vectors yaml]; }; - variancePartition = derive2 { name="variancePartition"; version="1.22.0"; sha256="1pqy2g9pg8pswmkrs2fzlkwwliw2r7f33h05bci5bz41b8ribpzj"; depends=[Biobase BiocParallel colorRamps doParallel foreach ggplot2 gplots iterators limma lme4 lmerTest MASS pbkrtest progress reshape2 scales]; }; - vbmp = derive2 { name="vbmp"; version="1.60.0"; sha256="0mx8z20c6ngx9rx1xada77lnpj9fwy08izrsb47p3a358z1n06d5"; depends=[]; }; - velociraptor = derive2 { name="velociraptor"; version="1.2.0"; sha256="06wymf4nwv024cq9amqx0zgf6gr71cnfscqj9l1zw7zbc2kj4id7"; depends=[basilisk BiocGenerics BiocParallel BiocSingular DelayedArray Matrix reticulate S4Vectors scuttle SingleCellExperiment SummarizedExperiment zellkonverter]; }; - vidger = derive2 { name="vidger"; version="1.12.0"; sha256="1c09il55qrai6yhvkirisry4hxr9g7d1vj185xh0i8vzy0mk5xby"; depends=[Biobase DESeq2 edgeR GGally ggplot2 ggrepel knitr RColorBrewer rmarkdown scales SummarizedExperiment tidyr]; }; - viper = derive2 { name="viper"; version="1.26.0"; sha256="113g0zwz89rfnnvdl16s9iiim1n73v6aql6lzpwsk288779sz991"; depends=[Biobase e1071 KernSmooth mixtools]; }; - vissE = derive2 { name="vissE"; version="1.0.0"; sha256="02gsga6pr664qcnvg8dmq54kyhv6zbmdqa61cxn39jdkn6fs0bnr"; depends=[ggforce ggnewscale ggplot2 ggrepel ggwordcloud GSEABase igraph Matrix msigdb plyr RColorBrewer reshape2 scico textstem tm]; }; - vsn = derive2 { name="vsn"; version="3.60.0"; sha256="0nppph3kv8z83368snb8s3n4vcqj829yyi1kh4q09qvq18rhvssv"; depends=[affy Biobase ggplot2 lattice limma]; }; - vtpnet = derive2 { name="vtpnet"; version="0.32.0"; sha256="1hy47wiai1dw0f6pzz64kxqzn57wnxvsa3miiyvbnzfiw1a3ksmz"; depends=[doParallel foreach GenomicRanges graph gwascat]; }; - vulcan = derive2 { name="vulcan"; version="1.14.0"; sha256="00yrnrvfqhamwcbcsqqg2zn1b6j30vcmc9dnqgi5ndf94lvfbnga"; depends=[Biobase caTools ChIPpeakAnno csaw DESeq2 DiffBind GenomicRanges gplots locfit S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene viper wordcloud zoo]; }; - waddR = derive2 { name="waddR"; version="1.6.1"; sha256="0011nrbc22ww42wnma6cnfif9frhgwxl4g1qz7nij1l1izg24v8c"; depends=[arm BiocFileCache BiocParallel eva Rcpp RcppArmadillo SingleCellExperiment]; }; - wateRmelon = derive2 { name="wateRmelon"; version="1.36.0"; sha256="1qar8z0nf33bqr488swig0bfq8lnvcdjcxvw3q3b0hkkvybn27zw"; depends=[Biobase IlluminaHumanMethylation450kanno_ilmn12_hg19 illuminaio limma lumi matrixStats methylumi ROC]; }; - wavClusteR = derive2 { name="wavClusteR"; version="2.26.0"; sha256="1sydzrqydfv1ik2h08xkxlx6xrv866bf0if6v5wch9l3krh0sych"; depends=[BiocGenerics Biostrings foreach GenomicFeatures GenomicRanges ggplot2 Hmisc IRanges mclust Rsamtools rtracklayer S4Vectors seqinr stringr]; }; - weaver = derive2 { name="weaver"; version="1.58.0"; sha256="0d7q1prq2zdxbj1ib1q8c42jsgylvbn3j025dl69w17971lbfdyg"; depends=[codetools digest]; }; - webbioc = derive2 { name="webbioc"; version="1.64.0"; sha256="1mpdw477j78s2nvlf2lzm6mdjcpamyyazjn060h9q3apawn6zajx"; depends=[affy annaffy Biobase BiocManager gcrma multtest qvalue vsn]; }; - weitrix = derive2 { name="weitrix"; version="1.4.0"; sha256="03ayy6bcmhyvmh9451iilpjbf0lwzbhw9y8lzd7rrq7129mbjgi9"; depends=[assertthat BiocGenerics BiocParallel Ckmeans_1d_dp DelayedArray DelayedMatrixStats dplyr ggplot2 glm2 limma purrr reshape2 RhpcBLASctl rlang S4Vectors scales SummarizedExperiment topconfects]; }; - widgetTools = derive2 { name="widgetTools"; version="1.70.0"; sha256="186xgpgyfyi4angxhz6558lfpzvvszzlpyfr8xnbccs3gshk3db2"; depends=[]; }; - wiggleplotr = derive2 { name="wiggleplotr"; version="1.16.0"; sha256="13f3g6fcc29k0g21mhnypm3nc6qqjw867vamvfkdzynspsfb32ga"; depends=[assertthat cowplot dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges purrr rtracklayer S4Vectors]; }; - wpm = derive2 { name="wpm"; version="1.2.1"; sha256="19x3wakx2h7h0hvlbm9yq2lw83lysmxjwq350bc0kvz62hii6i5r"; depends=[Biobase cli config dplyr DT ggplot2 golem logging RColorBrewer rlang shiny shinycustomloader shinydashboard shinyWidgets stringr SummarizedExperiment]; }; - wppi = derive2 { name="wppi"; version="1.0.0"; sha256="0wbvkhhhy1ngj0sxvi12z1qk13dp3cbzaxc58kycmvmns9flffbf"; depends=[dplyr igraph logger magrittr Matrix OmnipathR progress purrr RCurl rlang tibble tidyr]; }; - xcms = derive2 { name="xcms"; version="3.14.1"; sha256="1g8k90p0sbcb3rdrbldj5bcjp2piy5ldni4jplyr78vjpmrmvqk7"; depends=[Biobase BiocGenerics BiocParallel IRanges lattice MassSpecWavelet MsCoreUtils MSnbase mzR plyr ProtGenerics RANN RColorBrewer robustbase S4Vectors SummarizedExperiment]; }; - xmapbridge = derive2 { name="xmapbridge"; version="1.50.0"; sha256="0bbhlm4c5v8d3qw579lw9qgyyq3p8kdd2kcrdlgv7q18gp5bkw7h"; depends=[]; }; - yamss = derive2 { name="yamss"; version="1.18.0"; sha256="1al615x778h17jqiyhiyf6djaq9iygs1hlbrna6y4xc0f2kvgxld"; depends=[BiocGenerics data_table EBImage IRanges limma Matrix mzR S4Vectors SummarizedExperiment]; }; - yarn = derive2 { name="yarn"; version="1.18.0"; sha256="1x07l255x52z6cgdc2j8285shqszhr034xm5686rp6d35vah55ji"; depends=[Biobase biomaRt downloader edgeR gplots limma matrixStats preprocessCore quantro RColorBrewer readr]; }; - zFPKM = derive2 { name="zFPKM"; version="1.14.0"; sha256="1k7xaxr2gn26y8bps5l32g2axfhdn07nbk4q3qcx32d5jm75qkx2"; depends=[checkmate dplyr ggplot2 SummarizedExperiment tidyr]; }; - zellkonverter = derive2 { name="zellkonverter"; version="1.2.1"; sha256="0b1wsxvixrv517crry07wmsqhx1sc6nfd7jk5z6svpydhwkg1jqr"; depends=[basilisk DelayedArray Matrix reticulate S4Vectors SingleCellExperiment SummarizedExperiment]; }; - zinbwave = derive2 { name="zinbwave"; version="1.14.2"; sha256="1y8krazz2qdn0wn8ijjs2gn5dl5l960v6bijbkvh0r8066l7viky"; depends=[BiocParallel edgeR genefilter Matrix SingleCellExperiment softImpute SummarizedExperiment]; }; - zlibbioc = derive2 { name="zlibbioc"; version="1.38.0"; sha256="1dv5bf12kzk1yzyfs3g5syim16sbi44kalvzj2i2xcnxnl6x60ip"; depends=[]; }; + MVCClass = derive2 { name="MVCClass"; version="1.68.0"; sha256="088gzh33vjkjf78xczqfs89pyg0k7c3533yfvijqxl84ni2ky78z"; depends=[]; }; + MWASTools = derive2 { name="MWASTools"; version="1.18.0"; sha256="0i8880nb6y7sanb9w8cwvd69990p1zmfyi3d98259hl2ly65zywj"; depends=[boot car ComplexHeatmap ggplot2 glm2 gridExtra igraph KEGGgraph KEGGREST ppcor qvalue RCurl SummarizedExperiment]; }; + Maaslin2 = derive2 { name="Maaslin2"; version="1.8.0"; sha256="08zncj3ywc5pcywi3zgqvvlmqgp9j165b3vrkipvwv15b647jqvp"; depends=[biglm car chemometrics cplm data_table dplyr edgeR ggplot2 glmmTMB hash lme4 lmerTest logging lpsymphony MASS metagenomeSeq optparse pbapply pcaPP pheatmap pscl robustbase vegan]; }; + MantelCorr = derive2 { name="MantelCorr"; version="1.64.0"; sha256="10n1f04088wzki7mw27zwlahv6mmkwjjljkj0g65az5arki02rbl"; depends=[]; }; + MassArray = derive2 { name="MassArray"; version="1.46.0"; sha256="1m3a0h5jmjifm16z9l37rij00jka0k22qryq0lmhvfmidzvn7pbf"; depends=[]; }; + MassSpecWavelet = derive2 { name="MassSpecWavelet"; version="1.60.0"; sha256="1icqyxkx5a9y3wahkxpxngw85c7l4hih1ym9nwwn9qy93pnw1zi4"; depends=[waveslim]; }; + MatrixGenerics = derive2 { name="MatrixGenerics"; version="1.6.0"; sha256="1s75p8rrmj24r0vcbaiyw8xg8y84j388mv6iawai7pypfcl8s1z3"; depends=[matrixStats]; }; + MatrixQCvis = derive2 { name="MatrixQCvis"; version="1.2.0"; sha256="0isahwrq232fkls7bsjlnsfi2q1yimfx61k7as8in82a5jf56rs1"; depends=[ComplexHeatmap dplyr ggplot2 Hmisc htmlwidgets impute imputeLCMD limma openxlsx pcaMethods plotly proDA rlang rmarkdown Rtsne S4Vectors shiny shinydashboard shinyhelper shinyjs SummarizedExperiment tibble tidyr umap UpSetR vegan vsn]; }; + MatrixRider = derive2 { name="MatrixRider"; version="1.26.0"; sha256="0mv0w3m7waqfm8gy39hmdn00p6cq0a0ndr01scfg1js29jm6sgc2"; depends=[Biostrings IRanges S4Vectors TFBSTools XVector]; }; + MeSHDbi = derive2 { name="MeSHDbi"; version="1.30.0"; sha256="0m4vak1sqh28dz4s2i3nhvhpns024kqnapqa6ibqq0spac8fvknr"; depends=[AnnotationDbi Biobase RSQLite]; }; + MeasurementError_cor = derive2 { name="MeasurementError.cor"; version="1.66.0"; sha256="119d7wz374vshg89p72qbnnxwdk32h4rhz8ay505vnnqkyyiw5ag"; depends=[]; }; + Melissa = derive2 { name="Melissa"; version="1.10.0"; sha256="0ybhmf1kpj77z76izfbc4ipjphrdqdba5kpym6fxq08lcj96j4k7"; depends=[assertthat BiocStyle BPRMeth cowplot data_table doParallel foreach GenomicRanges ggplot2 magrittr matrixcalc mclust MCMCpack mvtnorm ROCR truncnorm]; }; + Mergeomics = derive2 { name="Mergeomics"; version="1.22.0"; sha256="0sjpx6iffrc8yb702xlyxy6bahw2f3dpp8l9vzgm2rl9jll2raxk"; depends=[]; }; + MesKit = derive2 { name="MesKit"; version="1.4.0"; sha256="1bz5krwx8v63s9mzbxivkj88vp0f1i3xk4mplkhra8wrn5kc7qvf"; depends=[AnnotationDbi ape Biostrings circlize ComplexHeatmap cowplot data_table dplyr ggplot2 ggrepel ggridges IRanges mclust phangorn pracma RColorBrewer S4Vectors tidyr]; }; + MetCirc = derive2 { name="MetCirc"; version="1.24.0"; sha256="0wgf6l6ficl4456sa56ccjgj4z9iwp94ar2dhqjyjqz5fxdz4cvk"; depends=[amap circlize ggplot2 MSnbase S4Vectors scales shiny]; }; + MetID = derive2 { name="MetID"; version="1.12.0"; sha256="08n0b76vzv5zlcw0icc2155wbyik2r7x43gf7rxj929l9yx213py"; depends=[ChemmineR devtools igraph Matrix stringr]; }; + MetNet = derive2 { name="MetNet"; version="1.12.0"; sha256="1h8n595qz0wjg4mx4wccmxz7j9wlkqzbg8c2a30gkhlwknc3k8qh"; depends=[BiocParallel bnlearn dplyr GENIE3 ggplot2 mpmi parmigene ppcor psych rlang S4Vectors stabs SummarizedExperiment tibble tidyr]; }; + MetaCyto = derive2 { name="MetaCyto"; version="1.16.0"; sha256="0rhxnj7s01mvfg6bnrx86qm88dihzcivz66z0l52qvc13q38zxv7"; depends=[cluster fastcluster flowCore FlowSOM ggplot2 metafor tidyr]; }; + MetaNeighbor = derive2 { name="MetaNeighbor"; version="1.14.0"; sha256="16j9xx7hka13shih9cb3l49vd06ay83pg434lxz0pkdl3zlfhkak"; depends=[beanplot dplyr ggplot2 gplots igraph Matrix matrixStats RColorBrewer SingleCellExperiment SummarizedExperiment tibble tidyr]; }; + MetaVolcanoR = derive2 { name="MetaVolcanoR"; version="1.8.0"; sha256="178wva1km2j53yr3j49pzahsixqlcln750l433vzl111p7db1xc6"; depends=[cowplot data_table dplyr ggplot2 htmlwidgets metafor metap plotly rlang tidyr topconfects]; }; + Metab = derive2 { name="Metab"; version="1.28.0"; sha256="1syd548djqcmx8d094mzgj4mw9zzfq2sn9fqxm4z2kpgzqnmy400"; depends=[pander svDialogs xcms]; }; + MetaboCoreUtils = derive2 { name="MetaboCoreUtils"; version="1.2.0"; sha256="1srmpyccpdqxxlwq68d03yddb74a3kb6yw6yb6v92mpfal1qgdss"; depends=[MsCoreUtils stringr]; }; + MetaboSignal = derive2 { name="MetaboSignal"; version="1.24.0"; sha256="1rn6i6masadz5y2lrhjfw2rkfri25rnfnx0gxg9pqsg523bz2plb"; depends=[AnnotationDbi biomaRt EnsDb_Hsapiens_v75 hpar igraph KEGGgraph KEGGREST MWASTools mygene org_Hs_eg_db RCurl]; }; + MethCP = derive2 { name="MethCP"; version="1.7.0"; sha256="1smhwmrgckgivf6xfk54sz197cw1mar95chzkrfpf4wxw3jzbbkn"; depends=[BiocParallel bsseq DNAcopy DSS GenomeInfoDb GenomicRanges IRanges methylKit S4Vectors]; }; + MethPed = derive2 { name="MethPed"; version="1.22.0"; sha256="1a48yhnaw0lxb9cj0ywd59j7yf109bii0qq7d8v9rl9l1l4apmy8"; depends=[Biobase randomForest]; }; + MethReg = derive2 { name="MethReg"; version="1.4.0"; sha256="1axqcza16r7wqnd78bdzh2sv5yi00ikymawkq0y2spcafb85facr"; depends=[DelayedArray dplyr GenomicRanges ggplot2 ggpubr IRanges MASS Matrix plyr progress pscl readr rlang S4Vectors sesameData sfsmisc stringr SummarizedExperiment tibble tidyr]; }; + MethTargetedNGS = derive2 { name="MethTargetedNGS"; version="1.26.0"; sha256="1n5gsizg9cfq2mi2v7f81ika423ci7vdgddnlxj5x8vszn5jfavk"; depends=[Biostrings gplots seqinr stringr]; }; + MethylAid = derive2 { name="MethylAid"; version="1.28.0"; sha256="014v732rlqw474bxvgzhw2zcjliry4587lnns12zv8qj8lp780wx"; depends=[Biobase BiocGenerics BiocParallel ggplot2 gridBase hexbin matrixStats minfi RColorBrewer shiny SummarizedExperiment]; }; + MethylMix = derive2 { name="MethylMix"; version="2.24.0"; sha256="0dwkw0bjaviyf7xshimckcsgx4zdxydl7l0x5skgbgrrc42xb9g3"; depends=[data_table digest foreach ggplot2 impute limma R_matlab RColorBrewer RCurl RPMM]; }; + MethylSeekR = derive2 { name="MethylSeekR"; version="1.34.0"; sha256="0wh4rfw80f9ig8j3ng0b0i297wzrpb4ka1cw0nm8klsqrh0kz3ng"; depends=[BSgenome geneplotter GenomicRanges IRanges mhsmm rtracklayer]; }; + Mfuzz = derive2 { name="Mfuzz"; version="2.54.0"; sha256="0pk632xqacahxf57q9zafdci9qarfq94swlwzdzhav211ln4c5gh"; depends=[Biobase e1071 tkWidgets]; }; + MiChip = derive2 { name="MiChip"; version="1.48.0"; sha256="13j58iz7fjj41833yd8dcks061zknxdy2ky0ka0i56japng0w1l2"; depends=[Biobase]; }; + MiPP = derive2 { name="MiPP"; version="1.66.0"; sha256="1m42rv20f9cwnr97ckx4lm193zf0kjr2v33fisymyaq5rrl7ppfn"; depends=[Biobase e1071 MASS]; }; + MiRaGE = derive2 { name="MiRaGE"; version="1.36.0"; sha256="10laq0b1acsirykb5cjxlpj91lqvmhsd3ammk331njaaczh4mjrx"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager S4Vectors]; }; + MicrobiomeProfiler = derive2 { name="MicrobiomeProfiler"; version="1.0.0"; sha256="13awswgm1n30fy73xxlph5aay8a4nkb1gjjzhqy9w7djpm99nw8g"; depends=[clusterProfiler config DT enrichplot ggplot2 golem htmltools magrittr shiny shinycustomloader shinyWidgets]; }; + MicrobiotaProcess = derive2 { name="MicrobiotaProcess"; version="1.6.0"; sha256="1wzr98fzrby12v6843f7l1dc0xcsbg9f1lkdg85qkv9j4c6aji52"; depends=[ape Biostrings coin dplyr foreach ggplot2 ggrepel ggsignif ggstar ggtree magrittr MASS patchwork rlang SummarizedExperiment tibble tidyr tidyselect tidytree treeio vegan zoo]; }; + MineICA = derive2 { name="MineICA"; version="1.34.0"; sha256="00pbhbz44dx5gfzzf1drwny4a779zxk4hjavb1fkpg15cm7c152x"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt cluster colorspace fastICA foreach fpc ggplot2 GOstats graph gtools Hmisc igraph JADE lumi lumiHumanAll_db marray mclust plyr RColorBrewer Rgraphviz scales xtable]; }; + MinimumDistance = derive2 { name="MinimumDistance"; version="1.38.0"; sha256="077prww1k374czkd8dlpy081ki101vpl2gpi4dmjbzzq5q45ld7f"; depends=[Biobase BiocGenerics data_table DNAcopy ff foreach GenomeInfoDb GenomicRanges IRanges lattice MatrixGenerics matrixStats oligoClasses S4Vectors SummarizedExperiment VanillaICE]; }; + ModCon = derive2 { name="ModCon"; version="1.2.0"; sha256="1pgvkscvsacm7ag6yyqlpxs6c5vyb3hlmk6gzkiarsc1b29iqhm4"; depends=[data_table]; }; + Modstrings = derive2 { name="Modstrings"; version="1.10.0"; sha256="0lnfvv8k0ffpf72zvhxy6831mgr4gajd4miad8rjzaajhqndr2yf"; depends=[BiocGenerics Biostrings crayon GenomicRanges IRanges S4Vectors stringi stringr XVector]; }; + MoonlightR = derive2 { name="MoonlightR"; version="1.19.0"; sha256="1bfp6cx4nmb821ww9bxxg2cfh87blwddrdjixpgb4aqzwizmhzhv"; depends=[Biobase circlize clusterProfiler doParallel DOSE foreach GEOquery gplots HiveR limma parmigene randomForest RColorBrewer RISmed SummarizedExperiment TCGAbiolinks]; }; + MotifDb = derive2 { name="MotifDb"; version="1.36.0"; sha256="0a2zg26zzk7bj5c33mbwl8dx9lh1hns8q8kwp09rbfjdichv7425"; depends=[BiocGenerics Biostrings GenomicRanges IRanges rtracklayer S4Vectors splitstackshape]; }; + MsBackendMassbank = derive2 { name="MsBackendMassbank"; version="1.2.0"; sha256="10dgck0rwzfxzlbdf8fclrci6858iqbl9g690fva4zsjllzykbl5"; depends=[BiocParallel DBI IRanges MsCoreUtils ProtGenerics S4Vectors Spectra]; }; + MsBackendMgf = derive2 { name="MsBackendMgf"; version="1.2.0"; sha256="0p7lmiijxgms01qsrgih9r8y5q355w67nqmpj5l70c0b52cv3ri9"; depends=[BiocParallel IRanges MsCoreUtils S4Vectors Spectra]; }; + MsBackendRawFileReader = derive2 { name="MsBackendRawFileReader"; version="1.0.0"; sha256="0gg71a5y6m46xnm45cmkjqbss4c416v8k8s21yp3qids7zc36izi"; depends=[BiocParallel IRanges MsCoreUtils rawrr S4Vectors Spectra]; }; + MsCoreUtils = derive2 { name="MsCoreUtils"; version="1.6.0"; sha256="1w8d1v2r3plwwcz23zhbpvklhapf2a6x3xmglyh4sh6sy9ynkgrv"; depends=[clue MASS Rcpp S4Vectors]; }; + MsFeatures = derive2 { name="MsFeatures"; version="1.2.0"; sha256="020ifrijlzdd3qk4bhd9z4knj5d87ildrkl3wcmxvwkvs9rbh8rq"; depends=[MsCoreUtils ProtGenerics SummarizedExperiment]; }; + Mulcom = derive2 { name="Mulcom"; version="1.44.0"; sha256="0s03qi0288fzzby5iyzgy4rarrxfxcyp6434755268vzz2s6pyj5"; depends=[Biobase fields]; }; + MultiAssayExperiment = derive2 { name="MultiAssayExperiment"; version="1.20.0"; sha256="1h3b8vqlbd04amjprxd1814zksdrbi01a0xn3906vkbqi43hfyn9"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors SummarizedExperiment tidyr]; }; + MultiBaC = derive2 { name="MultiBaC"; version="1.4.0"; sha256="0pwg6zmrfqrzra1r6ai68ya5fjf6dy2sl035xnxl617iii96jada"; depends=[ggplot2 Matrix MultiAssayExperiment plotrix ropls]; }; + MultiDataSet = derive2 { name="MultiDataSet"; version="1.22.0"; sha256="17asldnxqvp3sijx7nbi2lbbgnq4iq8z72qlg9080sm5lga1yy1s"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 ggrepel IRanges limma qqman S4Vectors SummarizedExperiment]; }; + MultiMed = derive2 { name="MultiMed"; version="2.16.0"; sha256="1dkvvrvjfc04ad48zywbrmbvm1lcnni6rvvl9gdax11y9lz19341"; depends=[]; }; + MungeSumstats = derive2 { name="MungeSumstats"; version="1.2.0"; sha256="06n1nxk2hz9gx6wwz0wljxjhyjz3j4njjdwy0vx7zai7rzdv0211"; depends=[Biostrings BSgenome data_table dplyr GenomeInfoDb GenomicRanges googleAuthR httr jsonlite magrittr R_utils RCurl rtracklayer stringr VariantAnnotation]; }; + MutationalPatterns = derive2 { name="MutationalPatterns"; version="3.4.0"; sha256="1n9rakj57yf17hay1bzvwc2h761yijmlflb3crg1bzwvmn32yhsl"; depends=[BiocGenerics Biostrings BSgenome cowplot dplyr GenomeInfoDb GenomicRanges ggalluvial ggdendro ggplot2 IRanges magrittr NMF pracma purrr RColorBrewer S4Vectors stringr tibble tidyr VariantAnnotation]; }; + NADfinder = derive2 { name="NADfinder"; version="1.18.0"; sha256="0glcjxgydj2k7h4963fl465y398xqvq4g393ainvwcgz77kx4sk0"; depends=[ATACseqQC baseline BiocGenerics corrplot csaw EmpiricalBrownsMethod GenomeInfoDb GenomicAlignments GenomicRanges IRanges limma metap Rsamtools rtracklayer S4Vectors signal SummarizedExperiment trackViewer]; }; + NBAMSeq = derive2 { name="NBAMSeq"; version="1.10.0"; sha256="1him4qg3xmgisl3jsws690ciknvj2876xn8n9gxc8l08cihfminf"; depends=[BiocParallel DESeq2 genefilter mgcv S4Vectors SummarizedExperiment]; }; + NBSplice = derive2 { name="NBSplice"; version="1.12.0"; sha256="12i5zqzxqzh4rfqh02mf2lr9k7xsz1hb945lcng0fc01l7dawd0a"; depends=[BiocParallel car edgeR ggplot2 MASS mppa reshape2]; }; + NCIgraph = derive2 { name="NCIgraph"; version="1.42.0"; sha256="1jw6v4gbx7zajiqm8hqbh1w14xhn5pvila5mkf3flfmsffqbk158"; depends=[graph KEGGgraph R_methodsS3 RBGL RCy3]; }; + NOISeq = derive2 { name="NOISeq"; version="2.38.0"; sha256="0mmvzf8y4gm84hgjdpf86b1y37237wp5mc3x1g6sdiz9qi8l356v"; depends=[Biobase Matrix]; }; + NPARC = derive2 { name="NPARC"; version="1.6.0"; sha256="16zf0kk3y1liqi1hxwrnkdvdp1dva87k1icyvy54n64ny5hhpriv"; depends=[BiocParallel broom dplyr magrittr MASS rlang tidyr]; }; + NTW = derive2 { name="NTW"; version="1.44.0"; sha256="1mmd5yvmmm094avpjdnf47qax4nrb4y6yy25qy8m6qasf6lwplx3"; depends=[mvtnorm]; }; + NanoMethViz = derive2 { name="NanoMethViz"; version="2.0.0"; sha256="1r2aqb4ky1wkzqkm2634qgvl6m9cig59fcqb90sd442n01dw8gi3"; depends=[AnnotationDbi assertthat BiocSingular bsseq cpp11 data_table dplyr e1071 forcats fs GenomicRanges ggplot2 ggthemes glue limma patchwork purrr Rcpp readr rlang Rsamtools RSQLite S4Vectors scales scico stringr SummarizedExperiment tibble tidyr withr zlibbioc]; }; + NanoStringDiff = derive2 { name="NanoStringDiff"; version="1.24.0"; sha256="0vnlxyjn6fkr4gy8qczxq9q9bnfjxc2ikq2yykbpkyb0bpjl3q2q"; depends=[Biobase matrixStats Rcpp]; }; + NanoStringNCTools = derive2 { name="NanoStringNCTools"; version="1.2.0"; sha256="01ghc28ly1dyjqb6xgipgvmr5nlavml8ibrsfpgihd8w8zz7s1ll"; depends=[Biobase BiocGenerics Biostrings ggbeeswarm ggiraph ggplot2 ggthemes IRanges pheatmap RColorBrewer S4Vectors]; }; + NanoStringQCPro = derive2 { name="NanoStringQCPro"; version="1.26.0"; sha256="0nkj0va3gzc5rskm3lm801a7hip2gjpchx8g3652xs7w5jq82z5f"; depends=[AnnotationDbi Biobase knitr NMF org_Hs_eg_db png RColorBrewer]; }; + NanoTube = derive2 { name="NanoTube"; version="1.0.0"; sha256="0wymz5y78kgf1i6ln27hnkin4v617q5zg5ljxa205q8b4qxnghxg"; depends=[Biobase fgsea ggplot2 limma reshape]; }; + Nebulosa = derive2 { name="Nebulosa"; version="1.4.0"; sha256="17ds14l5pn0896az17sswr4vfz335k251ph7l9iaqfi4asjddv6w"; depends=[ggplot2 ks Matrix patchwork Seurat SingleCellExperiment SummarizedExperiment]; }; + NeighborNet = derive2 { name="NeighborNet"; version="1.12.0"; sha256="0j9sl99y6ardaypiakc5irc2lzb8ykv3w8hxkyw3rgspwsqkf80k"; depends=[graph]; }; + NetPathMiner = derive2 { name="NetPathMiner"; version="1.30.0"; sha256="0c0fpwlrvrwgvi8qp4i7xlr75crpb83zm16fhcbx05bi9djhn6ws"; depends=[igraph]; }; + NetSAM = derive2 { name="NetSAM"; version="1.34.0"; sha256="1aw8qfc509m165wi3r60nfc082hrfqxsm0a4gkr072d0j6aymz9v"; depends=[AnnotationDbi biomaRt DBI doParallel foreach GO_db igraph R2HTML seriation survival WGCNA]; }; + NeuCA = derive2 { name="NeuCA"; version="1.0.0"; sha256="0nxhs5ash0z73q123d28j65n9f4w6502nk0l5frswpfibr2iyl94"; depends=[e1071 keras limma SingleCellExperiment]; }; + NewWave = derive2 { name="NewWave"; version="1.4.0"; sha256="03446a0k4fpqqp0kjzvf9q5x4aykmr086jnrkqwl542wyq6irsy5"; depends=[BiocSingular DelayedArray irlba Matrix SharedObject SingleCellExperiment SummarizedExperiment]; }; + NoRCE = derive2 { name="NoRCE"; version="1.6.0"; sha256="0p8w1bkqqgffbmj9j6cwbcw02d5nlqr4g6lpvhny0y7adbc8zcab"; depends=[AnnotationDbi biomaRt DBI dbplyr dplyr GenomicFeatures GenomicRanges ggplot2 GO_db igraph IRanges KEGGREST png RCurl reactome_db readr reshape2 RSQLite rtracklayer rWikiPathways S4Vectors SummarizedExperiment tidyr zlibbioc]; }; + NormalyzerDE = derive2 { name="NormalyzerDE"; version="1.12.0"; sha256="0r8piir3h6yh183r2j7vpv4glhpfirc49ssrg8bpf9w3m042k99i"; depends=[ape Biobase car ggforce ggplot2 limma MASS matrixStats preprocessCore raster RcmdrMisc SummarizedExperiment vsn]; }; + NormqPCR = derive2 { name="NormqPCR"; version="1.40.0"; sha256="08qq4ff56f77mv5b02190df1jpx4k70hwhpvqdvlkcxmv5l1a337"; depends=[Biobase qpcR RColorBrewer ReadqPCR]; }; + NuPoP = derive2 { name="NuPoP"; version="2.2.0"; sha256="1rsr3b07q78pa9kd3p3b1s9fx30xxan74r1mkb4nx4f8bxg0r3ag"; depends=[]; }; + NxtIRFcore = derive2 { name="NxtIRFcore"; version="1.0.0"; sha256="0v91bx18kknfby5f9xxvn3266cn1gv4nrgqv55bmq3bn1vlqf58q"; depends=[AnnotationHub BiocFileCache BiocGenerics BiocParallel Biostrings BSgenome data_table DelayedArray DelayedMatrixStats fst genefilter GenomeInfoDb GenomicRanges ggplot2 HDF5Array IRanges magrittr NxtIRFdata plotly R_utils Rcpp RcppProgress rhdf5 rtracklayer S4Vectors SummarizedExperiment zlibbioc]; }; + OCplus = derive2 { name="OCplus"; version="1.68.0"; sha256="0d21viy7dg870i3xvjq2c7w2djw9riz96fs6lnccg6nqv4gbyinl"; depends=[akima multtest]; }; + ODER = derive2 { name="ODER"; version="1.0.0"; sha256="02wc8h1nadwz11yvmb79ib9v4dpzvb6jsgjbv8ppw82jf18imq9s"; depends=[BiocFileCache BiocGenerics dasper data_table derfinder dplyr GenomeInfoDb GenomicRanges ggplot2 ggpubr ggrepel IRanges magrittr megadepth plyr purrr rtracklayer S4Vectors stringr tibble]; }; + OLIN = derive2 { name="OLIN"; version="1.72.0"; sha256="0wr423340z9ckc29alwwgbjbw23clhxyc3kgx5hk0hhxlv6pq9gb"; depends=[limma locfit marray]; }; + OLINgui = derive2 { name="OLINgui"; version="1.68.0"; sha256="0db9c9d5c71xzy3gdpwgxwk9pm0xibm1740zhcpypx4x2rg0lr1i"; depends=[marray OLIN tkWidgets widgetTools]; }; + OMICsPCA = derive2 { name="OMICsPCA"; version="1.12.0"; sha256="0d5hplm94k7hz6lap31jsb5pdh8lb7xl9i0swznm5vzrxrjdifyd"; depends=[cluster clValid corrplot cowplot data_table factoextra FactoMineR fpc GenomeInfoDb ggplot2 HelloRanges IRanges kableExtra magick MASS MultiAssayExperiment NbClust OMICsPCAdata pdftools PerformanceAnalytics reshape2 rgl rmarkdown rtracklayer tidyr]; }; + OPWeight = derive2 { name="OPWeight"; version="1.16.0"; sha256="1zkbhb70aam3g1arfb8bc8z4c4bd1qyr1zidz6srx1n25pkhp4ii"; depends=[MASS qvalue tibble]; }; + ORFhunteR = derive2 { name="ORFhunteR"; version="1.2.0"; sha256="0jkpq3hiv6n5c4hy3khs59020p98ig91w78ab37jam3sibykr0c6"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg38 data_table Peptides randomForest Rcpp rtracklayer stringr xfun]; }; + ORFik = derive2 { name="ORFik"; version="1.13.14"; sha256="0m7hf3a7bwz5yawl364c68g31q0syi03vlga0hhgy2hm9f3g0ips"; depends=[AnnotationDbi BiocGenerics BiocParallel biomartr Biostrings BSgenome cowplot data_table DESeq2 fst GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GGally ggplot2 gridExtra httr IRanges R_utils Rcpp Rsamtools rtracklayer S4Vectors SummarizedExperiment xml2]; }; + OSAT = derive2 { name="OSAT"; version="1.42.0"; sha256="1ibhrrlfjjils0w6n586s5ws0ybv7ija2p2f0jq3m3m9l324iyx9"; depends=[]; }; + OTUbase = derive2 { name="OTUbase"; version="1.44.0"; sha256="18wmllkc3h8x9ihrg0lzk4jvxjwrccl1jr37inkdmzv4aq5b7ygs"; depends=[Biobase Biostrings IRanges S4Vectors ShortRead vegan]; }; + OUTRIDER = derive2 { name="OUTRIDER"; version="1.12.0"; sha256="0ygsk0q1n8h02y4x3ccajkyyryn8gq0dz397l3jryb248g564a4h"; depends=[BBmisc BiocGenerics BiocParallel data_table DESeq2 generics GenomicFeatures GenomicRanges ggplot2 heatmaply IRanges matrixStats pcaMethods pheatmap plotly plyr PRROC RColorBrewer Rcpp RcppArmadillo reshape2 S4Vectors scales SummarizedExperiment]; }; + OVESEG = derive2 { name="OVESEG"; version="1.10.0"; sha256="016056f4qjnlz2s3z2vbqxicxwghzrlsfn2bpf741qz9ckv37s27"; depends=[BiocParallel fdrtool limma Rcpp SummarizedExperiment]; }; + OmaDB = derive2 { name="OmaDB"; version="2.10.0"; sha256="0qx0pf50k38pxz5lfhj66bjc6qy12d8nch2pvvcp209gxkqhjq0g"; depends=[ape Biostrings GenomicRanges httr IRanges jsonlite plyr topGO]; }; + OmicCircos = derive2 { name="OmicCircos"; version="1.32.0"; sha256="1lkncbdq93azp1gv0z4bwdi6l1gpywm096hhn45q7w6f0dy5ydqs"; depends=[GenomicRanges]; }; + OmicsLonDA = derive2 { name="OmicsLonDA"; version="1.10.0"; sha256="1vdnpsbpm4zyc17nah5qnlw66bihc7svqvbwgbxmyfp84c2vbxjy"; depends=[BiocGenerics BiocParallel ggplot2 gss plyr pracma SummarizedExperiment zoo]; }; + Omixer = derive2 { name="Omixer"; version="1.4.0"; sha256="1pdsxcih642csqga7wy93bbhib2v08pywa8aw67zy7p62hvrxwim"; depends=[dplyr forcats ggplot2 gridExtra magrittr readr stringr tibble tidyselect]; }; + OmnipathR = derive2 { name="OmnipathR"; version="3.2.0"; sha256="1q89mxnp8cig9r1499g7fb9p9x9ryz1dmc3w6ps5ww9n6rl8jqk8"; depends=[checkmate crayon curl digest dplyr httr igraph jsonlite later logger magrittr progress purrr rappdirs readr readxl rlang stringr tibble tidyr tidyselect xml2 yaml]; }; + OncoScore = derive2 { name="OncoScore"; version="1.22.0"; sha256="0pva48qjbxibgk2wxpaxr4xfq9i8dxbml418wx2nrjj20dn2dhcv"; depends=[biomaRt]; }; + OncoSimulR = derive2 { name="OncoSimulR"; version="3.2.0"; sha256="0dcx1qg42pxlcdpl07f53zkk32qpa8hd7fzdz5acvq3zm8yjmhlk"; depends=[car data_table dplyr ggplot2 ggrepel graph gtools igraph RColorBrewer Rcpp Rgraphviz smatr stringr]; }; + OpenStats = derive2 { name="OpenStats"; version="1.6.0"; sha256="17gvfvii7z8w9l6w5p0i05374d6sw704w627fnasbrcmkfqnvwka"; depends=[AICcmodavg car Hmisc jsonlite knitr MASS nlme rlist summarytools]; }; + OrderedList = derive2 { name="OrderedList"; version="1.66.0"; sha256="14js4l8airvya3yzrlkk5wz68nr454237bppfpv6b0kjyink8cli"; depends=[Biobase twilight]; }; + Organism_dplyr = derive2 { name="Organism.dplyr"; version="1.22.1"; sha256="01fdwcvi854jdxhj07l6cbnc0f7gnh1pwl7kpjdahbqg6mmfhd0g"; depends=[AnnotationDbi AnnotationFilter BiocFileCache DBI dbplyr dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges rlang RSQLite S4Vectors tibble]; }; + OrganismDbi = derive2 { name="OrganismDbi"; version="1.36.0"; sha256="0zp6x2iqhn9s3xp07yilnr6hn73acvkdai5xip4iiwjdlnfffj83"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager DBI GenomicFeatures GenomicRanges graph IRanges RBGL S4Vectors]; }; + Oscope = derive2 { name="Oscope"; version="1.24.0"; sha256="10aw7f3flvn3nvnzbrya2655c3g56md37ry4q2zl8hyrv5h3p0v2"; depends=[BiocParallel cluster EBSeq testthat]; }; + PAA = derive2 { name="PAA"; version="1.28.0"; sha256="1hpgskzzbn4rq4dh29nzv68kz40l2mj8mfbxpgbb3icd143jwiyf"; depends=[e1071 gplots gtools limma MASS mRMRe randomForest Rcpp ROCR sva]; }; + PADOG = derive2 { name="PADOG"; version="1.36.0"; sha256="1ya2wky2md4i8dh0zhnsmz53wjxk2l4633a6vsi0z5jkz2p8c3ym"; depends=[AnnotationDbi Biobase doRNG foreach GSA hgu133a_db hgu133plus2_db KEGGdzPathwaysGEO KEGGREST limma nlme]; }; + PAIRADISE = derive2 { name="PAIRADISE"; version="1.10.0"; sha256="1xsgmi3ddjwg403mrjpq5c23zy879aqrcxmlh48a89zsdic921di"; depends=[abind BiocParallel nloptr S4Vectors SummarizedExperiment]; }; + PANR = derive2 { name="PANR"; version="1.40.0"; sha256="108axql2iwgbjl7m41ydi8v7b76dg6xf9c0wfz1fjxwdnngd575q"; depends=[igraph MASS pvclust RedeR]; }; + PAST = derive2 { name="PAST"; version="1.10.0"; sha256="1mvv0jggvhlacx6lqag71ypi2vqbgghg1xdi82s54626ry66vj0d"; depends=[doParallel dplyr foreach GenomicRanges ggplot2 iterators qvalue rlang rtracklayer S4Vectors]; }; + PCAN = derive2 { name="PCAN"; version="1.22.0"; sha256="0fh5pghvh93pyq5k717qjzi527687pb32glvj51fzx9ykwcxl488"; depends=[BiocParallel]; }; + PCAtools = derive2 { name="PCAtools"; version="2.6.0"; sha256="10kfhsxhsjpzal3yvcqg769h5fz99cqqjq217cj9jip3jfh2m2h4"; depends=[beachmat BH BiocParallel BiocSingular cowplot DelayedArray DelayedMatrixStats dqrng ggplot2 ggrepel lattice Matrix Rcpp reshape2]; }; + PDATK = derive2 { name="PDATK"; version="1.2.0"; sha256="0nwz3fn6ykdpa8qmkiq2acv2imckk2ml8ayma2mcbjhrd9ff7m7f"; depends=[BiocGenerics BiocParallel caret clusterRepro ConsensusClusterPlus CoreGx data_table dplyr genefu ggplot2 ggplotify igraph MatrixGenerics matrixStats MultiAssayExperiment piano plyr pROC RColorBrewer reportROC rlang S4Vectors scales SummarizedExperiment survcomp survival survminer switchBox verification]; }; + PECA = derive2 { name="PECA"; version="1.30.0"; sha256="19g1qcqvpkli0jvhl2k4h9cwvlzh15spyhkqwv0h8fai45jnm7xy"; depends=[affy aroma_affymetrix aroma_core genefilter limma preprocessCore ROTS]; }; + PERFect = derive2 { name="PERFect"; version="1.8.0"; sha256="1daayhrvh0lk6drmnmmanry8wb8p3rkhh00zymzgncl7n6bv3dql"; depends=[fitdistrplus ggplot2 Matrix phyloseq psych sn zoo]; }; + PFP = derive2 { name="PFP"; version="1.2.0"; sha256="1h80wn6jzib6nxrvva7zba5sw8yd2fv6ncm8zmp019inajjcgn1i"; depends=[clusterProfiler ggplot2 graph igraph KEGGgraph magrittr plyr tidyr]; }; + PICS = derive2 { name="PICS"; version="2.38.0"; sha256="16i782zz0j2djypdm8zqlag6wfac9xiq232kbhci061604npv1ih"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools]; }; + PING = derive2 { name="PING"; version="2.38.0"; sha256="0nd5l1s211qyyrws4k5z45v483cxi6i1fazkx98bhnvfp5fb4mz1"; depends=[BiocGenerics BSgenome fda GenomicRanges Gviz IRanges PICS S4Vectors]; }; + PLPE = derive2 { name="PLPE"; version="1.54.0"; sha256="1njzm736b6lvh34hh58zbdm1ixgwmjk58dr916sda5d15bbpgqrf"; depends=[Biobase LPE MASS]; }; + POMA = derive2 { name="POMA"; version="1.4.0"; sha256="11ihqijqys6yd2ns99892dyi677v1d5vv10w99n0ka1821i9jcsb"; depends=[broom caret clisymbols ComplexHeatmap crayon dplyr e1071 ggcorrplot ggplot2 ggraph ggrepel glasso glmnet impute knitr limma magrittr mixOmics MSnbase patchwork qpdf randomForest RankProd rmarkdown tibble tidyr vegan]; }; + POWSC = derive2 { name="POWSC"; version="1.2.0"; sha256="159m2ds42dnvx9f2w2g9y4avjwq6n2fm4fq7v6rbyynf8hp4hwnw"; depends=[Biobase ggplot2 limma MAST pheatmap RColorBrewer SingleCellExperiment SummarizedExperiment]; }; + PPInfer = derive2 { name="PPInfer"; version="1.20.0"; sha256="06saafcy5n9h9dg95q64i1cv7hpbpv7r13fj9y8pyc6gqy6bicq4"; depends=[biomaRt fgsea ggplot2 igraph kernlab STRINGdb yeastExpData]; }; + PREDA = derive2 { name="PREDA"; version="1.40.0"; sha256="0435857cg30410w1iqpqd15nwn9x43axw0n2w6pv2jwcxdn58gjj"; depends=[annotate Biobase lokern multtest]; }; + PROMISE = derive2 { name="PROMISE"; version="1.46.0"; sha256="1pajvwr89jh7nn2myv5y24xk2k1vl6zs52lrla70v25xxhpmwwkk"; depends=[Biobase GSEABase]; }; + PROPER = derive2 { name="PROPER"; version="1.26.0"; sha256="19rn1vad18sfdwgnyh9fv5hh70h4pvsy32rac393hd39wqqhmsl0"; depends=[edgeR]; }; + PROPS = derive2 { name="PROPS"; version="1.16.0"; sha256="19m02qcgnq8kgi17l1v70k5kpdy696dsv9gvr60w4z1dgk1ghw4s"; depends=[Biobase bnlearn reshape2 sva]; }; + PROcess = derive2 { name="PROcess"; version="1.70.0"; sha256="116x99z4nq895x9np6mhm6rrc3agg2ni6rim6aargda7c6i5v8rm"; depends=[Icens]; }; + PSEA = derive2 { name="PSEA"; version="1.28.0"; sha256="14whd775m4pvf0mggrdw0jyz5wrhqdyj647qvrnkjnvnfkhivh1a"; depends=[Biobase MASS]; }; + PSICQUIC = derive2 { name="PSICQUIC"; version="1.32.0"; sha256="0zqz9jyca75ahmkds61cl03i68n3v25n7nmfwc9niv23ikp18pj4"; depends=[BiocGenerics biomaRt httr IRanges plyr RCurl]; }; + PWMEnrich = derive2 { name="PWMEnrich"; version="4.30.0"; sha256="16nphxfmfrxpf6w4xccpr132a7jz34nhjv0rg58n6n7kfsf9h4k7"; depends=[BiocGenerics Biostrings evd gdata S4Vectors seqLogo]; }; + PanVizGenerator = derive2 { name="PanVizGenerator"; version="1.22.0"; sha256="0rhx2jc5kc9bl00v16frh8b4075n0jqn4s37pkvqp3ypcbqws32d"; depends=[FindMyFriends igraph jsonlite pcaMethods shiny]; }; + Path2PPI = derive2 { name="Path2PPI"; version="1.24.0"; sha256="07a0z9islqnla01pmqni4a3l90iq1c4bwhycnarmdhhrcq4ms2v9"; depends=[igraph]; }; + PathNet = derive2 { name="PathNet"; version="1.34.0"; sha256="1syd5k54jj74f39z871a9xc5snslmsv6h9f0lacpf8chcpbs47hy"; depends=[]; }; + PathoStat = derive2 { name="PathoStat"; version="1.20.0"; sha256="0vaidkwnny60m0qpkraz6cnzmwm344niwk325dyqyc348r99bk1s"; depends=[ape BiocStyle ComplexHeatmap corpcor DESeq2 devtools dplyr DT edgeR ggplot2 glmnet gmodels knitr limma matrixStats phyloseq plotly plyr RColorBrewer rentrez reshape2 ROCR scales shiny shinyjs tidyr vegan webshot XML]; }; + PeacoQC = derive2 { name="PeacoQC"; version="1.4.0"; sha256="1szxqn2rz9qnc9k88gzmvndiwlch8b4ahxspnyf21xhrkvdqys1j"; depends=[circlize ComplexHeatmap flowCore flowWorkspace ggplot2 gridExtra plyr]; }; + PepsNMR = derive2 { name="PepsNMR"; version="1.12.0"; sha256="05m1bjk6xpm4k05g4ww7zhhv93l56k8qq78lirqi9gsnj05a9898"; depends=[ggplot2 gridExtra Matrix matrixStats ptw reshape2]; }; + PhIPData = derive2 { name="PhIPData"; version="1.2.0"; sha256="1jlbwlj47raymg1njgg7wfl81apc5dn0x2plrrhyi1rrdrjdzgpp"; depends=[BiocGenerics cli edgeR GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; + PharmacoGx = derive2 { name="PharmacoGx"; version="2.6.0"; sha256="1rglk12ng959sqkfgv8q7sv0mkdsvwkn8dgb0pv4xi0kcl03frgs"; depends=[Biobase BiocGenerics BiocParallel caTools checkmate CoreGx data_table downloader ggplot2 glue jsonlite magicaxis MultiAssayExperiment RColorBrewer reshape2 S4Vectors SummarizedExperiment]; }; + PhenStat = derive2 { name="PhenStat"; version="2.30.0"; sha256="0b423kkbyyjk4ns4pdwh1lag2k0v7wn17h4l4aca3zkjrsf5522n"; depends=[car corrplot ggplot2 graph knitr lme4 logistf MASS msgps nlme nortest pingr reshape SmoothWin]; }; + PhenoGeneRanker = derive2 { name="PhenoGeneRanker"; version="1.2.0"; sha256="1x5fbipgsiz2ipg9yh2r8wr8w1s6q01vq4149gjjxgx779xz250n"; depends=[doParallel dplyr foreach igraph Matrix]; }; + PhosR = derive2 { name="PhosR"; version="1.4.0"; sha256="0ssfvc9qqj25j48srjjissq034f7giddx45w236yssaynw3ykslr"; depends=[BiocGenerics circlize dendextend dplyr e1071 GGally ggdendro ggplot2 ggpubr ggtext igraph limma network pcaMethods pheatmap preprocessCore RColorBrewer reshape2 rlang ruv S4Vectors SummarizedExperiment tidyr]; }; + PhyloProfile = derive2 { name="PhyloProfile"; version="1.8.0"; sha256="0j9i0h8dvqjhpx08rwjbrmfibvmzvf2wlj31db1radf7hbj10wxr"; depends=[ape BiocStyle bioDist Biostrings colourpicker data_table DT energy ExperimentHub ggplot2 gridExtra OmaDB pbapply plyr RColorBrewer RCurl shiny shinyBS shinyjs xml2 yaml zoo]; }; + Pi = derive2 { name="Pi"; version="2.6.0"; sha256="14bpqzwx59shx5467nj0g6wj58qh9zqhy1i9l1n1gk7wd52ig5ql"; depends=[BiocGenerics caret dnet dplyr GenomeInfoDb GenomicRanges ggnetwork ggplot2 ggrepel glmnet igraph IRanges lattice MASS Matrix osfr plot3D purrr randomForest RCircos readr ROCR scales supraHex tibble tidyr]; }; + Pigengene = derive2 { name="Pigengene"; version="1.20.0"; sha256="1rdz2d5fy6gpdvzv5vfgxngwkag062i6bvvjqkyflabn0yijjpmi"; depends=[BiocStyle bnlearn C50 clusterProfiler DBI dplyr gdata ggplot2 GO_db graph impute MASS matrixStats openxlsx partykit pheatmap preprocessCore ReactomePA Rgraphviz WGCNA]; }; + PloGO2 = derive2 { name="PloGO2"; version="1.6.0"; sha256="0i5b7nfifjx1ywvdq4mhvy3wzdg8cqdcc7sw1awsz9xfnrjnhcdp"; depends=[GO_db GOstats httr lattice openxlsx xtable]; }; + PoDCall = derive2 { name="PoDCall"; version="1.2.0"; sha256="0hwhnk5iyyz5fddms237j6iaim97nw1z1qxbsic9l7z2bv1qz8g1"; depends=[diptest DT ggplot2 gridExtra LaplacesDemon mclust purrr readr rlist shiny shinyjs]; }; + PoTRA = derive2 { name="PoTRA"; version="1.10.0"; sha256="0qqr9mjqhfk76pnpzd0hzxw180swqr9b1dhakj65lha5mha4vgid"; depends=[BiocGenerics graph graphite igraph org_Hs_eg_db]; }; + PrInCE = derive2 { name="PrInCE"; version="1.10.0"; sha256="09fvk96zxj0bglbs8kgnbg3xxri2pial14g4kcsynaac0m2lmdyk"; depends=[Biobase dplyr forecast Hmisc LiblineaR magrittr MSnbase naivebayes progress purrr ranger Rdpack robustbase speedglm tester tidyr]; }; + PrecisionTrialDrawer = derive2 { name="PrecisionTrialDrawer"; version="1.10.0"; sha256="1zr1jpbnjjrgrbm99n8182akp7xg75bf54gy0wc66r7dxj4vivfl"; depends=[BiocParallel biomaRt brglm cgdsr data_table DT GenomicRanges ggplot2 ggrepel googleVis httr IRanges jsonlite LowMACAAnnotation magrittr matrixStats RColorBrewer reshape2 S4Vectors shiny shinyBS stringr XML]; }; + Prostar = derive2 { name="Prostar"; version="1.26.0"; sha256="054ify5nv3cr1zy1ijnbvvnc9nwam5vqmfyl784pckf9igywb8gb"; depends=[BiocManager colourpicker DAPAR DAPARdata data_table DT future highcharter htmlwidgets later promises R_utils rclipboard rhandsontable sass shiny shinyAce shinyBS shinycssloaders shinyjqui shinyjs shinythemes shinyTree shinyWidgets tibble webshot XML]; }; + ProtGenerics = derive2 { name="ProtGenerics"; version="1.26.0"; sha256="0x53pk7h47gjza1q5pz7jb1qqhwa9z2rr5fr61qc92zl3mqk57m0"; depends=[]; }; + ProteoDisco = derive2 { name="ProteoDisco"; version="1.0.0"; sha256="14rizjlwf87qhi929b4vafjzvx7p112bsq0zb2wppxh3m7izs4zp"; depends=[BiocGenerics BiocParallel Biostrings checkmate cleaver dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges ParallelLogger plyr rlang S4Vectors tibble tidyr VariantAnnotation XVector]; }; + ProteoMM = derive2 { name="ProteoMM"; version="1.12.0"; sha256="1y7w6rs11kclh5nipnrh02ny12bgf2rkb2dghqcybl80s6r8m6bm"; depends=[biomaRt gdata ggplot2 ggrepel gtools matrixStats]; }; + ProteomicsAnnotationHubData = derive2 { name="ProteomicsAnnotationHubData"; version="1.24.0"; sha256="0qs5hbx7pww7qxxaimp2xqvs3lwcd41ndls0xcvvlk7pnp4i4sk8"; depends=[AnnotationHub AnnotationHubData Biobase BiocManager Biostrings GenomeInfoDb MSnbase mzR RCurl]; }; + PubScore = derive2 { name="PubScore"; version="1.6.0"; sha256="0b68pzz9iav2d18w6prpp4h6623mfm4qkp36mmr7jqd1ghgj4nc7"; depends=[dplyr ggplot2 ggrepel igraph intergraph network progress rentrez sna]; }; + PureCN = derive2 { name="PureCN"; version="2.0.1"; sha256="0527sfywa692pvj1kh6xvciryivmvyx1czq502rj3qi3abdqzwl8"; depends=[Biobase BiocGenerics Biostrings data_table DNAcopy futile_logger GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra IRanges Matrix mclust RColorBrewer rhdf5 Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation VGAM]; }; + Pviz = derive2 { name="Pviz"; version="1.28.0"; sha256="0n5bgnhngb38fgrjbibjs7wvmrglrlsr62c27y7k7rqckyrpv21l"; depends=[Biostrings biovizBase data_table GenomicRanges Gviz IRanges]; }; + QDNAseq = derive2 { name="QDNAseq"; version="1.30.0"; sha256="1sza9br8agpdz1k9fn5wisir44sj8v0rk4wbx35d2c2kp9q70pqj"; depends=[Biobase CGHbase CGHcall DNAcopy future_apply GenomicRanges IRanges matrixStats R_utils Rsamtools]; }; + QFeatures = derive2 { name="QFeatures"; version="1.4.0"; sha256="1rvdfs50hi4a6i9iah916c0yxl31yljs4k62mr839bi162zg4pj1"; depends=[AnnotationFilter Biobase BiocGenerics igraph IRanges lazyeval MsCoreUtils MultiAssayExperiment plotly ProtGenerics S4Vectors SummarizedExperiment]; }; + QSutils = derive2 { name="QSutils"; version="1.12.0"; sha256="1qcxarsk9625xsms0fpmlkrpzfbj4rnd8m03k6h1n08imj6x8z4d"; depends=[ape BiocGenerics Biostrings psych]; }; + QUBIC = derive2 { name="QUBIC"; version="1.22.0"; sha256="0arhrnn9mfcb3jppkxvv4a1g9rpziv53y9scin2gsk1qrqk17gfa"; depends=[biclust Matrix Rcpp RcppArmadillo]; }; + Qtlizer = derive2 { name="Qtlizer"; version="1.8.0"; sha256="1a9fq4qv9qsgfkddpxdgl0m879aprf1sijmys83lrx834kggzy02"; depends=[curl GenomicRanges httr stringi]; }; + QuartPAC = derive2 { name="QuartPAC"; version="1.26.0"; sha256="01v4icdwfx9l1md2wxcwh3qn8m7lc133slwdlssa0f1h6r2f7w0g"; depends=[data_table GraphPAC iPAC SpacePAC]; }; + QuasR = derive2 { name="QuasR"; version="1.34.0"; sha256="0d292xgaq8d3cdpa9anabda03lis46xc29iw9c5k5i3sj7dcr4g5"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicFiles GenomicRanges IRanges Rbowtie Rhtslib Rsamtools rtracklayer S4Vectors ShortRead]; }; + QuaternaryProd = derive2 { name="QuaternaryProd"; version="1.28.0"; sha256="0ijig5jmh5b1dzsmibzij1hhdn4b3nz6rvjx9rdvk0rhs7nhh5c1"; depends=[dplyr Rcpp yaml]; }; + R3CPET = derive2 { name="R3CPET"; version="1.26.0"; sha256="1i0jjkbnp8jc9lbbx615v7haz5dppa72fqqyps4rfqx6wbc4pizs"; depends=[BiocGenerics clValid data_table GenomeInfoDb GenomicRanges ggbio ggplot2 Hmisc igraph IRanges pheatmap Rcpp RCurl reshape2 S4Vectors]; }; + R453Plus1Toolbox = derive2 { name="R453Plus1Toolbox"; version="1.44.0"; sha256="1y60w0mbzv2hxs0lfx1sicn7wp1j9mmqw8pgprrf5z6nzcsc3zyl"; depends=[Biobase BiocGenerics biomaRt Biostrings BSgenome GenomicRanges IRanges R2HTML Rsamtools S4Vectors ShortRead SummarizedExperiment TeachingDemos VariantAnnotation xtable XVector]; }; + R4RNA = derive2 { name="R4RNA"; version="1.22.0"; sha256="1gf536j9nw8agzi6bm4dmadndg9ibkfzk0s7l5r2ahq5lsqsj6v4"; depends=[Biostrings]; }; + RBGL = derive2 { name="RBGL"; version="1.70.0"; sha256="0k2p1lwdvix4n742a97lv988rx5kg8cvcmzgyzj0538n1nz0lxk0"; depends=[BH graph]; }; + RBM = derive2 { name="RBM"; version="1.26.0"; sha256="0af3z0ps14mavra63xdqwbjbgq6kk9qjidahac2dbbc9ydcpdafq"; depends=[limma marray]; }; + RBioinf = derive2 { name="RBioinf"; version="1.54.0"; sha256="08ydadi3xx3kgjdi4d686ag70wnw4xmn9c9jfpbi192zz1niy1nk"; depends=[graph]; }; + RCAS = derive2 { name="RCAS"; version="1.20.0"; sha256="02zwz7c8ljmdcfxj54xns0a31sj616x63q63wxhxa1nb4dhgmvk7"; depends=[BiocGenerics Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 cowplot data_table DT genomation GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggseqlogo gprofiler2 IRanges knitr pbapply pheatmap plotly plotrix proxy ranger rmarkdown RSQLite rtracklayer S4Vectors]; }; + RCASPAR = derive2 { name="RCASPAR"; version="1.40.0"; sha256="0iw17mh880x1pjqs5ffjlc8xicy8qrks8yigb1aiyn4xd00ihf1s"; depends=[]; }; + RCM = derive2 { name="RCM"; version="1.10.0"; sha256="082qnzy5q3k5g2qazralj4jwhrdxm1y9xc8dxry5d4l6l6vf77wp"; depends=[alabama edgeR ggplot2 MASS nleqslv phyloseq RColorBrewer reshape2 tensor tseries VGAM]; }; + RCSL = derive2 { name="RCSL"; version="1.2.0"; sha256="01v45b42g0gvhz6h0p1j4865l2cm185ai40bf1fcvjd8747850h4"; depends=[ggplot2 igraph NbClust pracma RcppAnnoy Rtsne umap]; }; + RCy3 = derive2 { name="RCy3"; version="2.14.0"; sha256="17jkwbg4ap6nb404hhdaqsy3ixsv8kfvap5m1qdmijw8ip8g64wq"; depends=[base64enc base64url BiocGenerics fs glue graph httr IRdisplay IRkernel RColorBrewer RCurl RJSONIO uchardet uuid XML]; }; + RCyjs = derive2 { name="RCyjs"; version="2.16.0"; sha256="1xb98gyf847sy5ijv2ka1vsvz64n6fi356qmcgm4k1qhz1jizm6z"; depends=[base64enc BiocGenerics BrowserViz graph httpuv]; }; + RDRToolbox = derive2 { name="RDRToolbox"; version="1.44.0"; sha256="1mlfzvn6imnkj2mrma6nr5cm0qdxjca7vy6hlaidicvwn3jz4129"; depends=[MASS rgl]; }; + REBET = derive2 { name="REBET"; version="1.12.0"; sha256="19hsykk770jyrvd5lbaybggs4j1f1rnrbcq2mb0cz8w288lh4i5p"; depends=[ASSET]; }; + REDseq = derive2 { name="REDseq"; version="1.40.0"; sha256="106dx160nzjlxfg76v9g7f1rjpiwfrsab7639x94s62v2g51x5l4"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome BSgenome_Celegans_UCSC_ce2 ChIPpeakAnno IRanges multtest]; }; + REMP = derive2 { name="REMP"; version="1.18.0"; sha256="0n3ymwgq2bfix6qjgakib08hs0dw2cq838l79d3db3dxjaix8rs2"; depends=[AnnotationHub BiocGenerics BiocParallel Biostrings BSgenome caret doParallel foreach GenomeInfoDb GenomicRanges impute IRanges iterators kernlab minfi org_Hs_eg_db ranger readr rtracklayer S4Vectors settings SummarizedExperiment]; }; + RGMQL = derive2 { name="RGMQL"; version="1.14.0"; sha256="1ywmgqlzhjiv5hygq9lknahm94wz6xfxnc7wdpkaw4vri9lsdr3h"; depends=[BiocGenerics data_table dplyr GenomicRanges glue httr plyr RGMQLlib rJava rtracklayer S4Vectors xml2]; }; + RGSEA = derive2 { name="RGSEA"; version="1.28.0"; sha256="1bv8kg3npac1qlrj6mpx6f89avjqfp937w99f7iw60yqin8psa89"; depends=[BiocGenerics]; }; + RGalaxy = derive2 { name="RGalaxy"; version="1.37.1"; sha256="093dqjgsz4x4gw6wdbdbyjq3jazn64g7gndld0bxm4yw8ijg2s2x"; depends=[Biobase BiocGenerics optparse roxygen2 XML]; }; + RGraph2js = derive2 { name="RGraph2js"; version="1.22.0"; sha256="16pim49wls085ahaqac26ah7mx2a6ww9gf7s1rdsikr56xcnkzsb"; depends=[digest graph rjson whisker]; }; + RIPAT = derive2 { name="RIPAT"; version="1.4.0"; sha256="1kkavimbx8nq7qnddj363kvsv08sckk8j136xlh48fma0r8h3n43"; depends=[biomaRt GenomicRanges ggplot2 IRanges karyoploteR openxlsx plyr regioneR rtracklayer stringr]; }; + RITAN = derive2 { name="RITAN"; version="1.17.0"; sha256="02xp9f0kz443k98r3ncj67wqiipdl5iww9kbkdg9mxgwnahvbff9"; depends=[BgeeDB dynamicTreeCut ggplot2 gplots gridExtra gsubfn hash igraph knitr linkcomm MCL plotrix png RColorBrewer reshape2 RITANdata sqldf STRINGdb]; }; + RIVER = derive2 { name="RIVER"; version="1.18.0"; sha256="141qk3bl9ksc3sxpdfja8siw22njmdaic4zap1pm9nk6gssd9g1c"; depends=[Biobase ggplot2 glmnet pROC]; }; + RImmPort = derive2 { name="RImmPort"; version="1.22.0"; sha256="0fm29zlj8qllqi02h20l4ipf9ppqmajkk9mc9zr4nbx6pspxmk4q"; depends=[data_table DBI dplyr plyr reshape2 RSQLite sqldf]; }; + RJMCMCNucleosomes = derive2 { name="RJMCMCNucleosomes"; version="1.18.0"; sha256="0k4dk8m1pmgflyrwa8szkbfwqqrz8b0xnnf1df200npyrw49mb22"; depends=[BiocGenerics BiocParallel consensusSeekeR GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; + RLMM = derive2 { name="RLMM"; version="1.56.0"; sha256="08jwzj8k1r36xryy515x67lkb6w4czgsdr05ip370m8f1gsm9vrl"; depends=[MASS]; }; + RLSeq = derive2 { name="RLSeq"; version="1.0.0"; sha256="07llq48pnk62jzh4s0ars3j9grfkc6ii4mhwimvdviiskvk8j32g"; depends=[AnnotationHub aws_s3 callr caretEnsemble circlize ComplexHeatmap dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggplotify ggprism pheatmap RColorBrewer regioneR RLHub rtracklayer valr VennDiagram]; }; + RLassoCox = derive2 { name="RLassoCox"; version="1.2.0"; sha256="0df7mrf8wb4zvp5vb2j954wwb8b7xsygilc57s6shkhspappkasz"; depends=[glmnet igraph Matrix survival]; }; + RMassBank = derive2 { name="RMassBank"; version="3.4.0"; sha256="1awn7yb4ypnah038hh4my2v42ajsfi1spaljfzwpm520y5dqxlnz"; depends=[assertthat Biobase digest enviPat httr logger MSnbase mzR rcdk Rcpp RCurl rjson S4Vectors XML yaml]; }; + RNAAgeCalc = derive2 { name="RNAAgeCalc"; version="1.6.0"; sha256="0cqghkz6vqlbci4g1m3km9l20w1dfggag718bxisnm49p21bnzca"; depends=[AnnotationDbi ggplot2 impute org_Hs_eg_db recount SummarizedExperiment]; }; + RNASeqPower = derive2 { name="RNASeqPower"; version="1.34.0"; sha256="0hma29rp0349rmfpdrchkpivq8xqzlkrxigfc25ypx05ii1phkxf"; depends=[]; }; + RNASeqR = derive2 { name="RNASeqR"; version="1.12.0"; sha256="1f2rrk4lb8mawgy6pzkpdmjp85pl23mb89b45ay54jp28j16dgr5"; depends=[ballgown Biostrings clusterProfiler corrplot DESeq2 DOSE edgeR factoextra FactoMineR ggplot2 gridExtra org_Hs_eg_db org_Sc_sgd_db pathview PerformanceAnalytics pheatmap rafalib reshape2 reticulate Rsamtools stringr systemPipeR systemPipeRdata]; }; + RNAdecay = derive2 { name="RNAdecay"; version="1.14.0"; sha256="07x1s87q3w4v3ma96hr5jx08p3yjqcab2cnr44j3jvc5c1pzpiiq"; depends=[ggplot2 gplots nloptr scales TMB]; }; + RNAinteract = derive2 { name="RNAinteract"; version="1.42.0"; sha256="0nr9f6lrbyclmpnsnbhcd2y5qh6cp5vzq1gkylq1lb99pawhr9qi"; depends=[abind Biobase cellHTS2 geneplotter gplots hwriter ICS ICSNP lattice latticeExtra limma locfit RColorBrewer splots]; }; + RNAmodR = derive2 { name="RNAmodR"; version="1.8.0"; sha256="00spb46rx8bl93pc3v7mkfbrq7bvq8sfnqym7vs7kymv36a8g42y"; depends=[BiocGenerics BiocParallel Biostrings BSgenome colorRamps GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 Gviz IRanges matrixStats Modstrings RColorBrewer reshape2 ROCR Rsamtools rtracklayer S4Vectors]; }; + RNAmodR_AlkAnilineSeq = derive2 { name="RNAmodR.AlkAnilineSeq"; version="1.8.0"; sha256="17cj2834fl2yfkng5776cbahjfirfl0lggfcawa3gsxgjclnw3lv"; depends=[BiocGenerics GenomicRanges Gviz IRanges RNAmodR S4Vectors]; }; + RNAmodR_ML = derive2 { name="RNAmodR.ML"; version="1.8.0"; sha256="1dzcbmk416dzl0isbkn3sjrhmb0rkdd6z071iwinf35iyza16y2i"; depends=[BiocGenerics GenomicRanges IRanges ranger RNAmodR S4Vectors]; }; + RNAmodR_RiboMethSeq = derive2 { name="RNAmodR.RiboMethSeq"; version="1.8.0"; sha256="1sspi9ng7a6mzkn0m1p94vsd6v0ymclw320gi7awjbfdvpci20sw"; depends=[BiocGenerics GenomicRanges Gviz IRanges RNAmodR S4Vectors]; }; + RNAsense = derive2 { name="RNAsense"; version="1.8.0"; sha256="06mg6cpra1xx9yq4ic8qr5ixz1s21af9wv1rm07ywhwqnq9pbgr7"; depends=[ggplot2 NBPSeq qvalue SummarizedExperiment]; }; + ROC = derive2 { name="ROC"; version="1.70.0"; sha256="1mgxpv5p6gnv04wzkcryrg5as5xrxvlqlkkcbv0k1bx9y6ykijy9"; depends=[knitr]; }; + ROCpAI = derive2 { name="ROCpAI"; version="1.6.0"; sha256="1ims2ppbbwrp1wzg917jr9g08zbbhj38m1prj1yk9ix3inndbpdi"; depends=[boot fission knitr SummarizedExperiment]; }; + ROSeq = derive2 { name="ROSeq"; version="1.6.0"; sha256="077r63i0j47dxh4mdsx661bv9kavgmgmiy5a522cxwh5b37pkaxc"; depends=[edgeR limma pbmcapply]; }; + ROTS = derive2 { name="ROTS"; version="1.22.0"; sha256="0qhy984y83a3nf4zw54rasw3vn932q4zb3gljifkw701jnrzqmki"; depends=[Biobase Rcpp]; }; + ROntoTools = derive2 { name="ROntoTools"; version="2.22.0"; sha256="0h88d8wwqnv6alrxd7j2nzr8drqdkfl8b8sgy4wzclyin2qy71ln"; depends=[boot graph KEGGgraph KEGGREST Rgraphviz]; }; + RPA = derive2 { name="RPA"; version="1.50.0"; sha256="1ikz7l119n644hv6hhdykdsh6kahcigcwi1j8sm0cksvrbblsp25"; depends=[affy BiocGenerics BiocStyle phyloseq rmarkdown]; }; + RProtoBufLib = derive2 { name="RProtoBufLib"; version="2.6.0"; sha256="04qlhbhdchpr35rdc6jc3y8fy6znnfrdlsb8am04agbrvpjgrx10"; depends=[]; }; + RRHO = derive2 { name="RRHO"; version="1.34.0"; sha256="03r18j91xy7gjzpgi9mpdrv99an8422y9mxll5fqszllikivfkvz"; depends=[VennDiagram]; }; + RSVSim = derive2 { name="RSVSim"; version="1.34.0"; sha256="19adi8vyjyz5g7fcr77ag2wn745qzslps137r2wa2ah7175ny6rr"; depends=[Biostrings GenomicRanges IRanges ShortRead]; }; + RSeqAn = derive2 { name="RSeqAn"; version="1.14.0"; sha256="0x1w1bbz5395g8m51avkhb7gswjxl93cq9xd5mh3f8b6mybahbwy"; depends=[Rcpp]; }; + RTCA = derive2 { name="RTCA"; version="1.46.0"; sha256="142v1938ba077v26kassym5jdz4zai1pwbql9zpibvzxgg1r7vr4"; depends=[Biobase gtools RColorBrewer]; }; + RTCGA = derive2 { name="RTCGA"; version="1.24.0"; sha256="1h904df27mcqh8ic0wb5v8r4afzznfb8ihibcs0s8zvsnlqa9jrg"; depends=[assertthat data_table dplyr ggplot2 ggthemes knitr purrr rvest scales stringi survival survminer viridis XML xml2]; }; + RTCGAToolbox = derive2 { name="RTCGAToolbox"; version="2.24.0"; sha256="1hg9i1z27i3l49vc3k4dda2qr93rqdjla8raxv7j1flbs9ximh77"; depends=[BiocGenerics data_table DelayedArray GenomeInfoDb GenomicRanges httr limma RaggedExperiment RCircos RCurl RJSONIO S4Vectors stringr SummarizedExperiment survival TCGAutils XML]; }; + RTN = derive2 { name="RTN"; version="2.18.0"; sha256="0yjbvcaci77xbxkl35i03vdmd2ascaphv2lpagcib4wlj2qsg57y"; depends=[car data_table igraph IRanges limma minet mixtools pheatmap pwr RedeR S4Vectors snow SummarizedExperiment viper]; }; + RTNduals = derive2 { name="RTNduals"; version="1.18.0"; sha256="1h646yysi879v1w60sc1f6wckyz788cq2psyihnp873k001yzgv9"; depends=[RTN]; }; + RTNsurvival = derive2 { name="RTNsurvival"; version="1.18.0"; sha256="158ffqrysprfx5g5m9mc645bjcpdjr3cksl521jc4ak401va7l7l"; depends=[data_table dunn_test egg ggplot2 pheatmap RColorBrewer RTN RTNduals scales survival]; }; + RTopper = derive2 { name="RTopper"; version="1.40.0"; sha256="18x3qmqxh6y64bmp2a8d7f794inglx7mvaiva5rs04y26qlwww9s"; depends=[Biobase limma multtest]; }; + RUVSeq = derive2 { name="RUVSeq"; version="1.28.0"; sha256="1a19klscykdgsd7izcxyr45ml7g0gpdj65gvbaw124mal2p4zi9q"; depends=[Biobase EDASeq edgeR MASS]; }; + RUVcorr = derive2 { name="RUVcorr"; version="1.26.0"; sha256="0va76nl1j4f5cs1d7cxz2gx7v80r42ia178c9nb2fb91lmahalsn"; depends=[BiocParallel bladderbatch corrplot gridExtra lattice MASS psych reshape2 snowfall]; }; + RUVnormalize = derive2 { name="RUVnormalize"; version="1.28.0"; sha256="1yqnp1fpln7g4h20fikr9hh7x80s93pdip9g612m0djp5p2xlvlx"; depends=[Biobase RUVnormalizeData]; }; + RVS = derive2 { name="RVS"; version="1.16.0"; sha256="0m44bdyi1fnmgymyl7yb875930ydpwaqgc5dsx2fyqngnj7l8fh2"; depends=[GENLIB gRain kinship2 snpStats]; }; + RadioGx = derive2 { name="RadioGx"; version="1.4.0"; sha256="1fnfsx72lfs9hjxnvcyh500fxfvvxj95krpvsx9bv0n9z14j8b9v"; depends=[assertthat Biobase BiocParallel caTools CoreGx downloader magicaxis matrixStats RColorBrewer reshape2 S4Vectors scales SummarizedExperiment]; }; + RaggedExperiment = derive2 { name="RaggedExperiment"; version="1.18.0"; sha256="1ml68mi61wr2lk3zq1bbpb567jf0mybs76384qzml35n89a0x6ja"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges Matrix MatrixGenerics S4Vectors SummarizedExperiment]; }; + RandomWalkRestartMH = derive2 { name="RandomWalkRestartMH"; version="1.14.0"; sha256="01aqp4yxph21vv2jmkx1lv2kxpvyqv83pp7r3xynilp4kbfjvr3q"; depends=[dnet igraph Matrix]; }; + RankProd = derive2 { name="RankProd"; version="3.20.0"; sha256="1g97z1dl1m9f7zx2lrs66rl2arcc7fmfvzmash2vz0362m2isj5i"; depends=[gmp Rmpfr]; }; + RareVariantVis = derive2 { name="RareVariantVis"; version="2.22.0"; sha256="1pvssz6akpvl0kc81dg9l4n033fb4py4wrp7rmb16g1w2mwz27aw"; depends=[BiocGenerics BSgenome BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb GenomicFeatures GenomicRanges GenomicScores googleVis gtools IRanges phastCons100way_UCSC_hg19 S4Vectors SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; + RbcBook1 = derive2 { name="RbcBook1"; version="1.62.0"; sha256="1752107f8xwra0rskz1r0661k5vb39a72lx0rpb9yzk8nvlvrfj0"; depends=[Biobase graph rpart]; }; + Rbec = derive2 { name="Rbec"; version="1.2.0"; sha256="0gmd9hj4vhg0bgbd3j72hm02n2cbdz35r40kkh6r872bhbi8fjpd"; depends=[dada2 doParallel foreach ggplot2 Rcpp readr]; }; + Rbowtie = derive2 { name="Rbowtie"; version="1.34.0"; sha256="0ardmryx6ac7v6n900a1klrrldvbmh7bxvy8ldz8rwid19h29ikr"; depends=[]; }; + Rbowtie2 = derive2 { name="Rbowtie2"; version="2.0.0"; sha256="0xpvrx2ak9x913sym4l46ycwbnmpcdwb3bf3dfd2gsp0krv8vh1x"; depends=[magrittr Rsamtools]; }; + Rcade = derive2 { name="Rcade"; version="1.36.0"; sha256="0drggwwnjvirnzg8g79ba784w57zbhppp1f40d3gql0f7hajhwxs"; depends=[baySeq GenomeInfoDb GenomicAlignments GenomicRanges IRanges plotrix rgl Rsamtools S4Vectors]; }; + RcisTarget = derive2 { name="RcisTarget"; version="1.14.0"; sha256="1qarr7xd71kz1haccj65x7sc7pc4v6xpqcfa3rkyp2bk240gigi7"; depends=[arrow AUCell BiocGenerics data_table dplyr feather GenomeInfoDb GenomicRanges GSEABase R_utils SummarizedExperiment tibble]; }; + Rcpi = derive2 { name="Rcpi"; version="1.30.0"; sha256="0hn31hfyygnz6dc78m5xi5ivgpr048a292si1h4pxnbz6ldwfqb8"; depends=[Biostrings ChemmineR doParallel fmcsR foreach GOSemSim rcdk RCurl rjson]; }; + Rcwl = derive2 { name="Rcwl"; version="1.10.0"; sha256="1hz7r8qdcvxpqhfq9fak9pydmxs97swn1wlh2dg2k2rd64msj3qy"; depends=[basilisk batchtools BiocParallel codetools DiagrammeR R_utils S4Vectors shiny yaml]; }; + RcwlPipelines = derive2 { name="RcwlPipelines"; version="1.10.0"; sha256="0yzihadrf5rx1jj33b1fa9a3nffw7nv84fh70pb5p6g15v7wm5k0"; depends=[BiocFileCache git2r httr rappdirs Rcwl S4Vectors]; }; + Rdisop = derive2 { name="Rdisop"; version="1.54.0"; sha256="1v3k6dp9q4q23vcpak01cdl353q66y88667dcq7cv020nw9nf1pq"; depends=[Rcpp]; }; + ReQON = derive2 { name="ReQON"; version="1.40.0"; sha256="14v79vg3pmpkbzgn8xqd020jdwcs8g57d46bzl23yi3w1rsfbrb1"; depends=[rJava Rsamtools seqbias]; }; + ReactomeContentService4R = derive2 { name="ReactomeContentService4R"; version="1.2.0"; sha256="0qqimr9hfpaiswsf0mly59i64csmjcs8d0vzpavpw147vdpmpixa"; depends=[data_table doParallel foreach httr jsonlite magick]; }; + ReactomeGSA = derive2 { name="ReactomeGSA"; version="1.8.0"; sha256="0ajyl4klp3x95c6mg885ra7ivifj2lpycfidxs7rag30k3rypn31"; depends=[dplyr ggplot2 gplots httr jsonlite progress RColorBrewer tidyr]; }; + ReactomeGraph4R = derive2 { name="ReactomeGraph4R"; version="1.2.0"; sha256="06a7xyx39h7bjnybi0zv4mh3nzkcacylcrfy5f95a5vkh130hzps"; depends=[data_table doParallel foreach getPass jsonlite magrittr neo4r purrr ReactomeContentService4R rlang]; }; + ReactomePA = derive2 { name="ReactomePA"; version="1.38.0"; sha256="1f4kd5cql7knnqaq3ba48kkypw8p60lkfdsnpqxcabdj30gqp55b"; depends=[AnnotationDbi DOSE enrichplot ggplot2 ggraph graphite igraph reactome_db]; }; + ReadqPCR = derive2 { name="ReadqPCR"; version="1.40.0"; sha256="1wfl093waz9qij5y1jv747k3zw61brndy8l8g5bvxz9cg9mfdfvi"; depends=[Biobase]; }; + RedeR = derive2 { name="RedeR"; version="1.42.0"; sha256="02idybdi52z6ilh7sl9slbnsxylydc8h6bdgk159sw3vl5w8lri5"; depends=[igraph]; }; + RefPlus = derive2 { name="RefPlus"; version="1.64.0"; sha256="1z7rllspiccs0ii5g0pfgv1wkhar2svjp2cvkgxb30y1xlfggahr"; depends=[affy affyPLM Biobase preprocessCore]; }; + RegEnrich = derive2 { name="RegEnrich"; version="1.4.0"; sha256="0k9965br3yx5i9smgsfp8bvlgii3a0p5zx8y4r8sygk2br4m9kny"; depends=[BiocParallel BiocSet DESeq2 DOSE dplyr fgsea ggplot2 limma magrittr randomForest reshape2 S4Vectors SummarizedExperiment tibble WGCNA]; }; + RepViz = derive2 { name="RepViz"; version="1.10.0"; sha256="13qyg9z2wfhl68z9280k7272fzfsic4wp14kq160r3y67kc1jz9h"; depends=[biomaRt GenomicRanges IRanges Rsamtools S4Vectors]; }; + Repitools = derive2 { name="Repitools"; version="1.40.0"; sha256="0d4p2qnnfmqfjqjdi9xw9ngjpv0y5hg355kvk9jpccqbw5rqi017"; depends=[BiocGenerics Biostrings BSgenome cluster DNAcopy edgeR GenomeInfoDb GenomicAlignments GenomicRanges gplots gsmoothr IRanges MASS Ringo Rsamtools Rsolnp rtracklayer S4Vectors]; }; + ReportingTools = derive2 { name="ReportingTools"; version="2.34.0"; sha256="06kwf87h84xgswkrm7brmgr9aj1nf6cxp24hrfymkzq2pha5y5j7"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category DESeq2 edgeR ggbio ggplot2 GOstats GSEABase hwriter IRanges knitr lattice limma PFAM_db R_utils XML]; }; + ResidualMatrix = derive2 { name="ResidualMatrix"; version="1.4.0"; sha256="0xsn4fm34a7xpkgmx3a1j2xzdaxf2hyla1062wqn04kw0k9y29vg"; depends=[DelayedArray Matrix S4Vectors]; }; + Rfastp = derive2 { name="Rfastp"; version="1.4.0"; sha256="0lxpzjbh8mpyf9d37lns11w6gics42ghy2j90xq3cwmn287x2j4r"; depends=[ggplot2 Rcpp reshape2 Rhtslib rjson zlibbioc]; }; + Rgin = derive2 { name="Rgin"; version="1.14.0"; sha256="1gyvli5dhx5wxy736zvvfvpm7a5sxv2zqpkl3nydq6czvd5xxjxh"; depends=[RcppEigen]; }; + Rgraphviz = derive2 { name="Rgraphviz"; version="2.38.0"; sha256="0fyv1ybpahkwz3fawzxgxfnshi8y7c18262rgdmqwdl5662vv1p7"; depends=[graph]; }; + Rhdf5lib = derive2 { name="Rhdf5lib"; version="1.16.0"; sha256="0yly9s3wdnhd9ci2jxfkql38ibv35yzs38a6g6ashbg1m5kgwd9p"; depends=[]; }; + Rhisat2 = derive2 { name="Rhisat2"; version="1.10.0"; sha256="092rws9vjxgm2jpkbp6ign47zmillyyidnc7ylcbn4zr9j5lwv0y"; depends=[GenomicFeatures GenomicRanges SGSeq]; }; + Rhtslib = derive2 { name="Rhtslib"; version="1.26.0"; sha256="0pwmzwjf6agfp3bq6w8s3piwmzwjdd474qd8zmbzrm772qbadfr4"; depends=[zlibbioc]; }; + RiboCrypt = derive2 { name="RiboCrypt"; version="1.0.0"; sha256="1c8pwql440jy81q2brqacs2mia1xhs29xhi0kkgknknm94m26cd4"; depends=[BiocGenerics BiocParallel Biostrings data_table dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges ORFik plotly rlang]; }; + RiboDiPA = derive2 { name="RiboDiPA"; version="1.2.0"; sha256="14659gpmk4wy68ap08i58vj5blhpczdyqs5hfy9rbzwrrri8k53l"; depends=[BiocFileCache data_table DESeq2 doParallel elitism foreach GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges matrixStats qvalue Rcpp reldist Rsamtools S4Vectors]; }; + RiboProfiling = derive2 { name="RiboProfiling"; version="1.24.0"; sha256="1szlzvm8ggjc40k4z2fxxa2h28g6j9wj2g5aw480v9hgyvvdw5lx"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr reshape2 Rsamtools rtracklayer S4Vectors sqldf]; }; + Ringo = derive2 { name="Ringo"; version="1.58.0"; sha256="0bjsyp6gsdgny0jg363z46sihqmv0xka7mzzkv1gjhiyk7zh8gs6"; depends=[Biobase BiocGenerics genefilter lattice limma Matrix RColorBrewer vsn]; }; + Risa = derive2 { name="Risa"; version="1.36.0"; sha256="0fmdsl86swj1sv6j4g3ljbcxp6xqnnxjpzqabjyzbicl3flmqcyv"; depends=[affy Biobase biocViews Rcpp xcms]; }; + Rmagpie = derive2 { name="Rmagpie"; version="1.50.0"; sha256="0yn1v4z25ifb00xg3mp0ajskv8502yl317pj2j04ax62qny95ykg"; depends=[Biobase e1071 kernlab pamr]; }; + RmiR = derive2 { name="RmiR"; version="1.49.0"; sha256="16nwh4a97qvyicm4f102xs52lx8cld0b80fykgil86kkd6v8zlja"; depends=[DBI RmiR_Hs_miRNA]; }; + Rmmquant = derive2 { name="Rmmquant"; version="1.12.0"; sha256="0wklqi37jgdfsf26zgfhq0rvb6xvg4v9z197mcwirqp7y1jm8rmm"; depends=[BiocStyle DESeq2 devtools GenomicRanges org_Mm_eg_db Rcpp S4Vectors SummarizedExperiment TBX20BamSubset TxDb_Mmusculus_UCSC_mm9_knownGene]; }; + RnBeads = derive2 { name="RnBeads"; version="2.12.0"; sha256="02zh9zlccipj3776il9szlacg1sm9rfqk62vpmxma2zn5al163a4"; depends=[BiocGenerics cluster ff fields GenomicRanges ggplot2 gplots gridExtra illuminaio IRanges limma MASS matrixStats methylumi plyr S4Vectors]; }; + RnaSeqSampleSize = derive2 { name="RnaSeqSampleSize"; version="2.4.0"; sha256="04zf30583wdn2q7wnj3hp81sa1h4dhd6yvl22sj0yxdqw919jvrj"; depends=[biomaRt edgeR heatmap3 KEGGREST matlab Rcpp RnaSeqSampleSizeData]; }; + Rnits = derive2 { name="Rnits"; version="1.28.0"; sha256="0wzg0wq0kyarl6s8lmmd6nkqfvvph46bvd4wxh5zy94zqbad7q0b"; depends=[affy Biobase boot ggplot2 impute limma qvalue reshape2]; }; + RpsiXML = derive2 { name="RpsiXML"; version="2.36.0"; sha256="19jc5dhwyy2z1cwbvgvw54v7kkbgh7g0wzy4frxv91zdgaj7wmhy"; depends=[annotate AnnotationDbi Biobase graph hypergraph RBGL XML]; }; + Rqc = derive2 { name="Rqc"; version="1.28.0"; sha256="0hcxkrfja0gmd8r2llijdvaw2xiiplk037305inimz0qna6w2071"; depends=[BiocGenerics BiocParallel BiocStyle Biostrings biovizBase GenomicAlignments GenomicFiles ggplot2 IRanges knitr markdown plyr Rcpp reshape2 Rsamtools S4Vectors shiny ShortRead]; }; + Rsamtools = derive2 { name="Rsamtools"; version="2.10.0"; sha256="0v6b3j45ivd9f04fpfs1vjwby5pi30mf5683bjxim01vi2krj9yh"; depends=[BiocGenerics BiocParallel Biostrings bitops GenomeInfoDb GenomicRanges IRanges Rhtslib S4Vectors XVector zlibbioc]; }; + Rsubread = derive2 { name="Rsubread"; version="2.8.0"; sha256="09kd7vl2z9k82ppfzy679hs7d00c60z3w3n6a8wq4z3k3f4glc3s"; depends=[Matrix]; }; + Rtpca = derive2 { name="Rtpca"; version="1.4.0"; sha256="05i25sfgdqsnw9ky0p25aix8qrzkirmcl5vvpqrv8bwvs335glm4"; depends=[Biobase dplyr fdrtool ggplot2 pROC tibble tidyr]; }; + Rtreemix = derive2 { name="Rtreemix"; version="1.56.0"; sha256="15kr8y8w059bxhl9x7j7qg01b55jsxfmfzgdyxk6l40i3l4i0wh1"; depends=[Biobase graph Hmisc]; }; + S4Vectors = derive2 { name="S4Vectors"; version="0.32.0"; sha256="1zm1xlqrq1f9xa81j3ij2p78g3aywq7izsk3h40z94fjggahvc09"; depends=[BiocGenerics]; }; + SAIGEgds = derive2 { name="SAIGEgds"; version="1.8.0"; sha256="08jhqpi13kg69nfl425m6rvgyvzfspfylgnzkk1v6v0kaz5876f2"; depends=[gdsfmt Rcpp RcppArmadillo RcppParallel SeqArray SPAtest]; }; + SANTA = derive2 { name="SANTA"; version="2.30.0"; sha256="0w0rd0vmjvz98ijk53ikpin7x5acl0yfkb2v7y77ma6lizy70rgl"; depends=[igraph Matrix]; }; + SBGNview = derive2 { name="SBGNview"; version="1.8.0"; sha256="17jh1ad1a951r89xd9127c1wv5s4rzd03qq8rh5zjn2zxzpwswr4"; depends=[AnnotationDbi bookdown httr igraph KEGGREST knitr pathview Rdpack rmarkdown rsvg SBGNview_data SummarizedExperiment xml2]; }; + SBMLR = derive2 { name="SBMLR"; version="1.90.0"; sha256="08cvhlrh13v571jc0fgfiwzc041nq2ndxpy5nsxmgpbsw5ryfgff"; depends=[deSolve XML]; }; + SC3 = derive2 { name="SC3"; version="1.22.0"; sha256="1vbzinr4aiskv9hjbqqzzy3chj48lzk9vv1zk7vr9v8w6qwlg3fm"; depends=[BiocGenerics cluster doParallel doRNG e1071 foreach ggplot2 pheatmap Rcpp RcppArmadillo robustbase ROCR rrcov S4Vectors shiny SingleCellExperiment SummarizedExperiment WriteXLS]; }; + SCAN_UPC = derive2 { name="SCAN.UPC"; version="2.36.0"; sha256="16d161x1npa4lh6ckp0p9ykdrj3x36gsylmq1kjm2vw8g4zknszv"; depends=[affy affyio Biobase Biostrings foreach GEOquery IRanges MASS oligo sva]; }; + SCANVIS = derive2 { name="SCANVIS"; version="1.7.0"; sha256="163026iz66687s7d27sj78vvn5n6df66qf0s5zxaallyx2gmh56x"; depends=[IRanges plotrix RCurl rtracklayer]; }; + SCATE = derive2 { name="SCATE"; version="1.4.0"; sha256="1b04bggi0rw9jmgak5j2ca6msqdrq1qdphg3g9w77a1rqyxza86s"; depends=[GenomicAlignments GenomicRanges mclust preprocessCore Rtsne SCATEData splines2 xgboost]; }; + SCArray = derive2 { name="SCArray"; version="1.2.0"; sha256="1jji2cikxkc40zaqwcknrpz5a6nyrqhbirx5ivsdnwslm8l79xmk"; depends=[BiocGenerics DelayedArray DelayedMatrixStats gdsfmt IRanges S4Vectors SingleCellExperiment SummarizedExperiment]; }; + SCBN = derive2 { name="SCBN"; version="1.12.0"; sha256="19jpbr5nr59dc9khbbx60gzbsg8llfd1zqwb9v88nr43v059k13f"; depends=[]; }; + SCFA = derive2 { name="SCFA"; version="1.4.0"; sha256="1850c78niv5hp3c6axi5nmv4qawqca1ip3xppp2nar8f9xiqjd6l"; depends=[BiocParallel cluster clusterCrit glmnet igraph keras Matrix matrixStats psych RhpcBLASctl survival tensorflow]; }; + SCOPE = derive2 { name="SCOPE"; version="1.6.0"; sha256="01sj416q0qzpji7k34xz37l4955fa3l2imms96k8zz1gs2a1xm3j"; depends=[BiocGenerics Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 DescTools DNAcopy doParallel foreach GenomeInfoDb GenomicRanges gplots IRanges RColorBrewer Rsamtools S4Vectors]; }; + SCnorm = derive2 { name="SCnorm"; version="1.16.0"; sha256="12fi24vgrsk5l0sx8ylkzvqww157bycx8irx3j08198ds01kwbry"; depends=[BiocGenerics BiocParallel cluster data_table forcats ggplot2 moments quantreg S4Vectors SingleCellExperiment SummarizedExperiment]; }; + SDAMS = derive2 { name="SDAMS"; version="1.14.0"; sha256="1rppqribspgnh0b0cw1k35igybm9nc28yidv2l3rd8p3spv0w7hz"; depends=[qvalue SummarizedExperiment trust]; }; + SELEX = derive2 { name="SELEX"; version="1.26.0"; sha256="0wyv02xsby1ax02n2bdy1j5qi2ph4bibmy1kvrm4m9hgr3b2c8sn"; depends=[Biostrings rJava]; }; + SEPIRA = derive2 { name="SEPIRA"; version="1.14.0"; sha256="1bndk9affhbz9ppg3bqq6llf2w3m9m6bqabzjra6hqawgi0v4fb9"; depends=[corpcor limma]; }; + SEtools = derive2 { name="SEtools"; version="1.8.0"; sha256="0vi9vd3xrhhk2mh2npr34p2jqf3isqfbyj988314g754c2vdzryn"; depends=[BiocParallel circlize ComplexHeatmap data_table DESeq2 edgeR Matrix openxlsx randomcoloR S4Vectors seriation SummarizedExperiment sva]; }; + SGSeq = derive2 { name="SGSeq"; version="1.28.0"; sha256="15l0r6svs27k82dd472is26shwayz6rs5ylg5gpf3mldr7sa5kja"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges igraph IRanges Rsamtools rtracklayer RUnit S4Vectors SummarizedExperiment]; }; + SIAMCAT = derive2 { name="SIAMCAT"; version="1.14.0"; sha256="0ymy12qkxf2fl8ms4va1xp8gjpi1sdwlbm9j6qfdpm8sahlxhi4w"; depends=[beanplot corrplot glmnet gridBase gridExtra infotheo LiblineaR matrixStats mlr ParamHelpers phyloseq pROC progress PRROC RColorBrewer scales stringr]; }; + SICtools = derive2 { name="SICtools"; version="1.24.0"; sha256="0i2dccdkzfrx2qvhgvnbj9rv51qxqddpk4la7js2z664f1kxcjw0"; depends=[Biostrings doParallel GenomicRanges IRanges matrixStats plyr Rsamtools stringr]; }; + SIM = derive2 { name="SIM"; version="1.64.0"; sha256="15nyfzdq1a154rcn9y2z0j5qv4sgwifx3qqxpg1hcdmwkkihi9qy"; depends=[globaltest quantreg quantsmooth]; }; + SIMAT = derive2 { name="SIMAT"; version="1.26.0"; sha256="1cfsj9lfxl32jinimv139b6bdl0bh4fnwkvqziwlsrlck9k6qf2d"; depends=[ggplot2 mzR Rcpp reshape2]; }; + SIMD = derive2 { name="SIMD"; version="1.12.0"; sha256="0bsp7ma0c9j9k3agxchyp54kp126qjvgmaqgi2flgmgwnmkwwbii"; depends=[edgeR methylMnM statmod]; }; + SIMLR = derive2 { name="SIMLR"; version="1.20.0"; sha256="19vhv7j29hiimznazpz986api12ry6pd8cgpkwrnwybr4gdvkm7c"; depends=[Matrix pracma Rcpp RcppAnnoy RSpectra]; }; + SISPA = derive2 { name="SISPA"; version="1.24.0"; sha256="1gzcc2vq9wvsh92lp80y0dlsi67bws6ng76ab2a4ak1n2lqhm7ak"; depends=[changepoint data_table genefilter ggplot2 GSVA plyr]; }; + SLGI = derive2 { name="SLGI"; version="1.54.0"; sha256="03jwdq4k44rys3f773c6l985a6v1bacbdghw97p0qpwspmzra8rs"; depends=[AnnotationDbi Biobase BiocGenerics GO_db lattice ScISI]; }; + SLqPCR = derive2 { name="SLqPCR"; version="1.60.0"; sha256="1sy722nw7fax0m9nnv2d3gy9g5fc4x2xfar521x7x7psfydmy5b6"; depends=[]; }; + SMAD = derive2 { name="SMAD"; version="1.10.0"; sha256="1l0x22cg14aj40039jzw1yl3cncil91nv97y9sqs54ay8rvyr5aj"; depends=[dplyr magrittr Rcpp RcppAlgos tidyr]; }; + SMAP = derive2 { name="SMAP"; version="1.58.0"; sha256="03fdxaqsxjdq93xazw8rgv22smdwr0ji1rcf6rk20a0p0wvrdpxh"; depends=[]; }; + SMITE = derive2 { name="SMITE"; version="1.22.0"; sha256="0wbhw8mi346h496r31i8da6jf6n5immhqffirvf67fzv6dim3v42"; depends=[AnnotationDbi Biobase BioNet geneLenDataBase GenomicRanges ggplot2 goseq Hmisc igraph IRanges KEGGREST org_Hs_eg_db plyr reactome_db S4Vectors scales]; }; + SNAGEE = derive2 { name="SNAGEE"; version="1.34.0"; sha256="1888qd2b1qmcvprp83qd02pp3bj0gipabbvr4xzn36crw4rwdksv"; depends=[SNAGEEdata]; }; + SNPRelate = derive2 { name="SNPRelate"; version="1.28.0"; sha256="011880cnpr6nnzf72n34b0bj5766iw5h4lm0zl0zdmpcgx95h24i"; depends=[gdsfmt]; }; + SNPediaR = derive2 { name="SNPediaR"; version="1.20.0"; sha256="1ljzj3fxqpfz75ax8smcfrghiw5hb7yv7hkn8i8ffwszni9ml63f"; depends=[jsonlite RCurl]; }; + SNPhood = derive2 { name="SNPhood"; version="1.24.0"; sha256="137lqpvjpr9zxxz26cigs55p2lkchs9jaljsw3bwsqrj9vki4rqr"; depends=[BiocGenerics BiocParallel Biostrings checkmate cluster data_table DESeq2 GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges lattice RColorBrewer reshape2 Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; + SOMNiBUS = derive2 { name="SOMNiBUS"; version="1.2.0"; sha256="03px2q7rxcxppshlsy5vd50y1whzjs4cigjz78jnkhd3pi3sxq5s"; depends=[Matrix mgcv VGAM]; }; + SPEM = derive2 { name="SPEM"; version="1.34.0"; sha256="187zvdd5j4f971zx6ppgws0jwalr4wqwmwj72ngcrn0fk3lzwv38"; depends=[Biobase Rsolnp]; }; + SPIA = derive2 { name="SPIA"; version="2.46.0"; sha256="0q8f32z8dm8jl295y88p5cj1rydkkxf9i1pvgnflwjqybn02kz0g"; depends=[KEGGgraph]; }; + SPLINTER = derive2 { name="SPLINTER"; version="1.20.0"; sha256="0qf35kxq6gyf401x59v1y92hf8fnd2vkjd4zsjrhf8bck80a6hy9"; depends=[biomaRt Biostrings BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 googleVis Gviz IRanges plyr S4Vectors seqLogo stringr]; }; + SPONGE = derive2 { name="SPONGE"; version="1.16.0"; sha256="18fkw98b9m197n214fm646nr0grjsfhkqs2m2cx6v4aia5kn2rk3"; depends=[Biobase data_table doRNG expm foreach glmnet gRbase igraph iterators logging MASS ppcor]; }; + SPsimSeq = derive2 { name="SPsimSeq"; version="1.4.0"; sha256="1s9vcb58sbr7p806palz7ak5dpqimj9ic4ycv34ymzmdsnyryiwb"; depends=[edgeR fitdistrplus Hmisc limma mvtnorm phyloseq SingleCellExperiment WGCNA]; }; + SQLDataFrame = derive2 { name="SQLDataFrame"; version="1.8.0"; sha256="1i5jjc65akd32klgsrfr4p9mvn6mzzjh6lmnh0zznxkfwsb37l8g"; depends=[BiocGenerics DBI dbplyr dplyr lazyeval RSQLite S4Vectors tibble]; }; + SQUADD = derive2 { name="SQUADD"; version="1.44.0"; sha256="02lby5pyvmkr4im96s6av4iz12l4w3j2pil0mbnxmnzlxn58bxgw"; depends=[RColorBrewer]; }; + SRAdb = derive2 { name="SRAdb"; version="1.56.0"; sha256="18z62c2w6spsmnyqcmc57w41vli5vrcrl3hpy1al1n1yy9fgil0y"; depends=[GEOquery graph RCurl RSQLite]; }; + STAN = derive2 { name="STAN"; version="2.22.0"; sha256="1inqjw11a791c6svw0y4p3m8rd09fjcna3j4p5950f975aph1q4g"; depends=[BiocGenerics GenomeInfoDb GenomicRanges Gviz IRanges poilog Rsolnp S4Vectors]; }; + STATegRa = derive2 { name="STATegRa"; version="1.30.0"; sha256="10a230bvfjvjwsjkh0v3fjbrjkwcvsdch8bfv1s6h4yav1m4wca7"; depends=[affy Biobase calibrate edgeR foreach ggplot2 gplots gridExtra limma MASS]; }; + STRINGdb = derive2 { name="STRINGdb"; version="2.6.0"; sha256="1hvb73anhbf1g82nn5m11s783z6ihvlavf7p30w29qggxggnl6lm"; depends=[gplots hash igraph plotrix plyr png RColorBrewer RCurl sqldf]; }; + STROMA4 = derive2 { name="STROMA4"; version="1.18.0"; sha256="10v8kgmx79zd2vgzwij3il80l724sdl0k4a3rm73kd4jw2wvhkrh"; depends=[Biobase BiocParallel cluster matrixStats]; }; + SWATH2stats = derive2 { name="SWATH2stats"; version="1.24.0"; sha256="0ifl1y3rs0r2zqkpcpiibyv12mjqz6wxs296f691k1qfz9qvx8kg"; depends=[biomaRt data_table ggplot2 reshape2]; }; + SamSPECTRAL = derive2 { name="SamSPECTRAL"; version="1.48.0"; sha256="1xxz5ggxj10psrz5rm0xjr8mxwc3cfyl9chsa9w2wxrrixypdnah"; depends=[]; }; + ScISI = derive2 { name="ScISI"; version="1.65.0"; sha256="0q3bbfsink5d8xslhp129qwvlq5mdzw8zkv9msd0q8qmkclsbiz1"; depends=[annotate AnnotationDbi apComplex GO_db org_Sc_sgd_db RpsiXML]; }; + Scale4C = derive2 { name="Scale4C"; version="1.16.0"; sha256="0gw89mnnpspi5y03ck8gqinnwbkykmf2k65gxm8m9j4l63gg33m8"; depends=[GenomicRanges IRanges smoothie SummarizedExperiment]; }; + ScaledMatrix = derive2 { name="ScaledMatrix"; version="1.2.0"; sha256="0vz8441gl5gycy1ypybwhq97bnyvhhlg6gxpi1dsdy2c9b6d81kc"; depends=[DelayedArray Matrix S4Vectors]; }; + Sconify = derive2 { name="Sconify"; version="1.14.0"; sha256="0dan0nbar8f5x6l7cwlx4f4yycpxj3j3f0xx3nfm8n07g1gbcf04"; depends=[dplyr flowCore FNN ggplot2 magrittr readr Rtsne tibble]; }; + SemDist = derive2 { name="SemDist"; version="1.28.0"; sha256="0291sqa4lhrfr2j6fdag814xzawvnqsdw8xbmh0kgv6jd2pqk2am"; depends=[annotate AnnotationDbi GO_db]; }; + SeqArray = derive2 { name="SeqArray"; version="1.34.0"; sha256="13fl5ls2xqka1dixxf428gqy18vg9q1xnmp4l9whxg97nppbjs81"; depends=[Biostrings gdsfmt GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + SeqGSEA = derive2 { name="SeqGSEA"; version="1.34.0"; sha256="0829rasz7lrhsm7w248dy9s4fzx2qmdkxvkgzakf2vn1j4h2x63v"; depends=[Biobase biomaRt DESeq2 doParallel]; }; + SeqGate = derive2 { name="SeqGate"; version="1.4.0"; sha256="155jii2mjpvcpif0yrjamb5220qiw00sk0yag14n47vv8gdyxncw"; depends=[BiocManager GenomicRanges S4Vectors SummarizedExperiment]; }; + SeqSQC = derive2 { name="SeqSQC"; version="1.16.0"; sha256="0bqfqg4gr3f5j9m5wnj7rpkia1dgmkwj5kr7fn82cq19qrz2hi7k"; depends=[e1071 ExperimentHub gdsfmt GenomicRanges GGally ggplot2 IRanges rbokeh RColorBrewer reshape2 rmarkdown S4Vectors SNPRelate]; }; + SeqVarTools = derive2 { name="SeqVarTools"; version="1.32.0"; sha256="0axiq33djppcvapz6ykpr6drd8b1lwd5xa458spqyaxj3f061l66"; depends=[Biobase BiocGenerics data_table gdsfmt GenomicRanges GWASExactHW IRanges logistf Matrix S4Vectors SeqArray]; }; + SharedObject = derive2 { name="SharedObject"; version="1.8.0"; sha256="1v6r94dp1lfx7kvbvw56pzshyrpsvpq3i92gld6b4gs51jc5si29"; depends=[BH BiocGenerics Rcpp]; }; + ShortRead = derive2 { name="ShortRead"; version="1.52.0"; sha256="1p17v15wd3v6w9ligpjjk28vy8k2ql57y2hhm8y6vnv9y3nagjsx"; depends=[Biobase BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges hwriter IRanges lattice latticeExtra Rhtslib Rsamtools S4Vectors XVector zlibbioc]; }; + SigCheck = derive2 { name="SigCheck"; version="2.26.0"; sha256="1wl06yipz59gqw9swj9sspzgbpn9g8r5vs9wgbr9kbya0yv225k6"; depends=[Biobase BiocParallel e1071 MLInterfaces survival]; }; + SigFuge = derive2 { name="SigFuge"; version="1.32.0"; sha256="0kayrdjakcg6wbiwncx3jmg7abnym18jj2wr2yfd980g0c387zbg"; depends=[GenomicRanges ggplot2 matlab reshape sigclust]; }; + SigsPack = derive2 { name="SigsPack"; version="1.8.0"; sha256="07fz6k2bcvbwdnqabvd9r4q4fnkmxsrn6jldgwyqg0gh4jjmnqfw"; depends=[Biobase Biostrings BSgenome GenomeInfoDb GenomicRanges quadprog rtracklayer SummarizedExperiment VariantAnnotation]; }; + SimBindProfiles = derive2 { name="SimBindProfiles"; version="1.32.0"; sha256="08lsr5b57lrkqryc51s25hmfhcfd45lvwdzn8a4f12961vzzdrj6"; depends=[Biobase limma mclust Ringo]; }; + SimFFPE = derive2 { name="SimFFPE"; version="1.6.0"; sha256="00f1f1frkslls6ra0bi98g26nn7l8vpplcc0vz7b9jhjic5bys8p"; depends=[Biostrings doParallel dplyr foreach GenomicRanges IRanges Rsamtools truncnorm]; }; + SingleCellExperiment = derive2 { name="SingleCellExperiment"; version="1.16.0"; sha256="01075vbs8hy399pxalav9rbkz4djvl84ip559jkz51fypd0m4i39"; depends=[BiocGenerics DelayedArray GenomicRanges S4Vectors SummarizedExperiment]; }; + SingleCellSignalR = derive2 { name="SingleCellSignalR"; version="1.6.0"; sha256="1iw9yis5d6m2bzqkyncz5cy49rncnjrbzwah4c3il8aq5a21hrfh"; depends=[BiocManager circlize data_table edgeR foreach gplots igraph limma multtest pheatmap Rtsne scran SIMLR stringr]; }; + SingleMoleculeFootprinting = derive2 { name="SingleMoleculeFootprinting"; version="1.2.0"; sha256="0abaxk5ck81libsfhy1w9jx1jjf7cix7znl2gydh2fd5qaafzfd3"; depends=[BiocGenerics Biostrings BSgenome data_table GenomeInfoDb GenomicRanges IRanges plyr QuasR RColorBrewer]; }; + SingleR = derive2 { name="SingleR"; version="1.8.0"; sha256="19lsn3cpghkhfbx4jqgbwwrnacrl7vj3r91ymd1gk02c9pn5dmci"; depends=[beachmat BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats Matrix Rcpp S4Vectors SummarizedExperiment]; }; + SomaticSignatures = derive2 { name="SomaticSignatures"; version="2.30.0"; sha256="1dxzfkvljnydv7kfybfa52dwcbkkci2r8gjspjf90k2bxf10phql"; depends=[Biobase Biostrings GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges NMF pcaMethods proxy reshape2 S4Vectors VariantAnnotation]; }; + SpacePAC = derive2 { name="SpacePAC"; version="1.32.0"; sha256="1pgpfxyw621f7ljwy4y6q9fdlk263b4rwz9vg1f2h61nz097nk2l"; depends=[iPAC]; }; + Spaniel = derive2 { name="Spaniel"; version="1.8.0"; sha256="0js302hgxn0q9xy7s6pdxidvhfcvm711bci6cw3a3bwhq2kacvnc"; depends=[dplyr DropletUtils ggplot2 igraph jpeg jsonlite magrittr png S4Vectors scater scran Seurat shiny SingleCellExperiment SummarizedExperiment]; }; + SparseSignatures = derive2 { name="SparseSignatures"; version="2.4.0"; sha256="0hz48bvw20qdvfb5ci4d9zq3znpzklv0mhhxrpd8n23xv8amby0l"; depends=[Biostrings BSgenome data_table GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges NMF nnlasso nnls reshape2]; }; + SpatialCPie = derive2 { name="SpatialCPie"; version="1.10.0"; sha256="0ml8fbjhnb2azvfcplpaw2zfvngkxn7z81d1s5f2shiww6x3qb8f"; depends=[colorspace data_table digest dplyr ggforce ggiraph ggplot2 ggrepel igraph lpSolve purrr readr rlang shiny shinycssloaders shinyjs shinyWidgets SummarizedExperiment tibble tidyr tidyselect zeallot]; }; + SpatialDecon = derive2 { name="SpatialDecon"; version="1.3.0"; sha256="1gbkdp2d5x6apmlv35rg1vjfnfsyp1dvchgdlq4yzqkslc7jib7y"; depends=[logNormReg]; }; + SpatialExperiment = derive2 { name="SpatialExperiment"; version="1.4.0"; sha256="1jn2xr51hv1pm53pgsilhbwal0bnz7mc17z5plpjxgh7jn9bx4x2"; depends=[BiocFileCache BiocGenerics DropletUtils magick rjson S4Vectors SingleCellExperiment SummarizedExperiment]; }; + SpeCond = derive2 { name="SpeCond"; version="1.48.0"; sha256="1mpzf9l7yim59wfg244rzqxm9vb10lp88688p5v2whcv5xx0a34a"; depends=[Biobase fields hwriter mclust RColorBrewer]; }; + Spectra = derive2 { name="Spectra"; version="1.4.0"; sha256="1kgwm040j23mjihym0kg5r9qz4f1ssfvnd3f6m5jasx59wgpv46f"; depends=[BiocGenerics BiocParallel fs IRanges MsCoreUtils ProtGenerics S4Vectors]; }; + SpectralTAD = derive2 { name="SpectralTAD"; version="1.10.0"; sha256="00yx87zkyyzpzkm9slmhs78pqivcfladsrnvh3wwlkgi2rky7qps"; depends=[BiocParallel cluster dplyr GenomicRanges HiCcompare magrittr Matrix PRIMME]; }; + SpidermiR = derive2 { name="SpidermiR"; version="1.24.0"; sha256="1mwqfg5vgc262bhjnbhn8yvjgmqyafc9kzln1a5pidpj5gyr757q"; depends=[AnnotationDbi gdata ggplot2 gplots gridExtra httr igraph lattice latticeExtra MAGeCKFlute miRNAtap miRNAtap_db org_Hs_eg_db TCGAbiolinks]; }; + SplicingFactory = derive2 { name="SplicingFactory"; version="1.2.0"; sha256="0gdk14591slhwnb6rpnksdirzgd7ga03sqkr3k7wndgk5h6dp2jb"; depends=[SummarizedExperiment]; }; + SplicingGraphs = derive2 { name="SplicingGraphs"; version="1.34.0"; sha256="0yks0iwh57795a3r9wmbc88afixw2p21dqmp9mh7a74zxyms51xl"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph igraph IRanges Rgraphviz Rsamtools S4Vectors]; }; + StarBioTrek = derive2 { name="StarBioTrek"; version="1.20.0"; sha256="1bxbqgjg8a5px6429raf1rlwjaj1z95w952icjpjx7602q890mrh"; depends=[AnnotationDbi e1071 ggplot2 graphite igraph MLmetrics reshape2 ROCR SpidermiR]; }; + Streamer = derive2 { name="Streamer"; version="1.40.0"; sha256="1hcjazhyg7g7yh1nnz39yjkh77291wpzm03bd1jspgvrjz28cv5w"; depends=[BiocGenerics graph RBGL]; }; + Structstrings = derive2 { name="Structstrings"; version="1.10.0"; sha256="0dkzrb5dx0spgkzzwwcs04dwjxacm9sl6jch120amh22v5y7wyzm"; depends=[BiocGenerics Biostrings crayon IRanges S4Vectors stringi stringr XVector]; }; + StructuralVariantAnnotation = derive2 { name="StructuralVariantAnnotation"; version="1.10.0"; sha256="1pw7d39944dwk5gw6q7igcn866zpqwz01ljaha2ih5dfvmhxka8n"; depends=[assertthat BiocGenerics Biostrings dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges rlang rtracklayer S4Vectors stringr SummarizedExperiment VariantAnnotation]; }; + SubCellBarCode = derive2 { name="SubCellBarCode"; version="1.10.0"; sha256="039fz7byy5whzm59gqar0784rv0axh6zw49jvh9p49wj2zx8pxzc"; depends=[AnnotationDbi caret e1071 ggplot2 ggrepel gridExtra networkD3 org_Hs_eg_db Rtsne scatterplot3d]; }; + SummarizedBenchmark = derive2 { name="SummarizedBenchmark"; version="2.12.0"; sha256="1vld4hzv3zbv7l0i4i8wkjn0rgn8f9lvxb6x2vw6qw47fn11skxw"; depends=[BiocGenerics BiocParallel crayon digest dplyr ggplot2 mclust rlang S4Vectors sessioninfo stringr SummarizedExperiment tibble tidyr UpSetR]; }; + SummarizedExperiment = derive2 { name="SummarizedExperiment"; version="1.24.0"; sha256="0qpnx2aii9vs7fcp0ax5j77ysbhi4qhjhm35vnygs3isbrjn925a"; depends=[Biobase BiocGenerics DelayedArray GenomeInfoDb GenomicRanges IRanges Matrix MatrixGenerics S4Vectors]; }; + Summix = derive2 { name="Summix"; version="2.0.0"; sha256="1bn5zsd3fnga8lski6ahh7fbm310n6awz27nafwzm6m9pzybwv49"; depends=[nloptr]; }; + Sushi = derive2 { name="Sushi"; version="1.31.0"; sha256="1cj4palsq99vnwihp6z9mw0f8w9qj2vq8zwnabf3bgg0l1wpsc7c"; depends=[biomaRt zoo]; }; + SwathXtend = derive2 { name="SwathXtend"; version="2.16.0"; sha256="01hjjx50fwwicvwci4x191cq8rvlh2v6gnpi5wb1mjqnyngrfzgb"; depends=[e1071 lattice openxlsx VennDiagram]; }; + SynExtend = derive2 { name="SynExtend"; version="1.6.0"; sha256="1r0f1yv6dxxc2k1q7vbcw6bjsk0j7ryvlp8hzmjfwi37cikril72"; depends=[Biostrings DECIPHER IRanges S4Vectors]; }; + SynMut = derive2 { name="SynMut"; version="1.10.0"; sha256="069pahvhsvnsbz8mvw4mgdqdh5bd26jv5gf8m4h5ys7c7sgn7a7f"; depends=[BiocGenerics Biostrings seqinr stringr]; }; + TADCompare = derive2 { name="TADCompare"; version="1.4.0"; sha256="1qywd8zm21578yfswgwwgwlhphms8m4acqr47zn8dj1qk8578q5k"; depends=[cluster cowplot dplyr ggplot2 ggpubr HiCcompare magrittr Matrix PRIMME RColorBrewer reshape2 tidyr]; }; + TAPseq = derive2 { name="TAPseq"; version="1.6.0"; sha256="0y40z1xpqif09yins9jf4k0h7wljdf3qwgzykxcq5lfgns66cx91"; depends=[BiocGenerics BiocParallel Biostrings BSgenome dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges S4Vectors tidyr]; }; + TBSignatureProfiler = derive2 { name="TBSignatureProfiler"; version="1.6.0"; sha256="0sdgbkg0mv742y9b7frp4i2zrknfw87ghz6wvw4w0y0gjrbasj9r"; depends=[ASSIGN BiocGenerics BiocParallel ComplexHeatmap DESeq2 DT edgeR gdata ggplot2 GSVA magrittr RColorBrewer reshape2 rlang ROCit S4Vectors singscore SummarizedExperiment]; }; + TCC = derive2 { name="TCC"; version="1.34.0"; sha256="0298zfvrs7x6050s3222fg5yp60siz85pfh6541wmah7j0wzpgsd"; depends=[baySeq DESeq2 edgeR ROC]; }; + TCGAbiolinks = derive2 { name="TCGAbiolinks"; version="2.22.1"; sha256="0114pwbxg6mdhv94g556krl08ig7nwaafrryxbjha4hvn0xwy36l"; depends=[biomaRt data_table downloader dplyr GenomicRanges ggplot2 httr IRanges jsonlite knitr plyr purrr R_utils readr rvest S4Vectors stringr SummarizedExperiment TCGAbiolinksGUI_data tibble tidyr XML xml2]; }; + TCGAbiolinksGUI = derive2 { name="TCGAbiolinksGUI"; version="1.20.0"; sha256="0941xcd42kz72vlhlm93681dwgi4afli5j8cfs331fpddpv7l4af"; depends=[caret clusterProfiler colourpicker data_table downloader DT ELMER ggplot2 ggrepel maftools pathview plotly readr sesame shiny shinyBS shinydashboard shinyFiles shinyjs stringr SummarizedExperiment TCGAbiolinks TCGAbiolinksGUI_data]; }; + TCGAutils = derive2 { name="TCGAutils"; version="1.14.0"; sha256="0gjmgz20hmy8c7igy5xvwql37k0v7662qkxwsc2vi01x6y781bcj"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicDataCommons GenomicFeatures GenomicRanges IRanges MultiAssayExperiment RaggedExperiment rvest S4Vectors stringr SummarizedExperiment xml2]; }; + TCseq = derive2 { name="TCseq"; version="1.18.0"; sha256="1kzz3fl19d1ivb6l55xadwg202vq4wza3r7wgf6fx196s20vnvng"; depends=[BiocGenerics cluster e1071 edgeR GenomicAlignments GenomicRanges ggplot2 IRanges locfit reshape2 Rsamtools SummarizedExperiment]; }; + TDARACNE = derive2 { name="TDARACNE"; version="1.44.0"; sha256="0rjlwj05fw0y4q02lhvdg0blpqrgxjq5kdq0hff94qjwp7fgn5gn"; depends=[Biobase GenKern Rgraphviz]; }; + TEQC = derive2 { name="TEQC"; version="4.16.0"; sha256="08jllnzsfz0zkn2m8n5c6cppjbh5cm8kpgwq652bgw5jmkkpg3f2"; depends=[Biobase BiocGenerics hwriter IRanges Rsamtools]; }; + TFARM = derive2 { name="TFARM"; version="1.16.0"; sha256="0dr3ifa3m115vgyk7501jp6h4wci04y9bqf41ixd40dwspd0dzjw"; depends=[arules fields GenomicRanges gplots stringr]; }; + TFBSTools = derive2 { name="TFBSTools"; version="1.32.0"; sha256="0j5gv145fczzdspwhbywlg47y05pgnkra9jg7bn4wa1k0cf5pr9g"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome caTools CNEr DBI DirichletMultinomial GenomeInfoDb GenomicRanges gtools IRanges RSQLite rtracklayer S4Vectors seqLogo TFMPvalue XML XVector]; }; + TFEA_ChIP = derive2 { name="TFEA.ChIP"; version="1.14.0"; sha256="0wdl9lmyfyfdh8b3r1nxzjdwasly3i3vzhbqqpf18p1xbh8zkapm"; depends=[biomaRt dplyr GenomicFeatures GenomicRanges IRanges org_Hs_eg_db R_utils]; }; + TFHAZ = derive2 { name="TFHAZ"; version="1.16.0"; sha256="05lnidls85b4r9xnyi0a3b26jv7nmjd7fwhgzrkrz3938nwh5xl2"; depends=[GenomicRanges IRanges S4Vectors]; }; + TFutils = derive2 { name="TFutils"; version="1.14.0"; sha256="00j83p8npzlphfcf1vmws65fy8cx109ksi2cmgnnizz5xj4xflaz"; depends=[AnnotationDbi BiocFileCache dplyr DT GSEABase httr magrittr miniUI org_Hs_eg_db readxl rjson Rsamtools shiny]; }; + TIN = derive2 { name="TIN"; version="1.26.0"; sha256="07m8q3lgcflmrchpw88y4w62iwq5cxd0sw1lbassvgych7dnq3ks"; depends=[aroma_affymetrix data_table impute squash stringr WGCNA]; }; + TMixClust = derive2 { name="TMixClust"; version="1.16.0"; sha256="1i69q92ss9q2vv6hyxvq8wv55w1937rmda43a8qfblzy0jr5avww"; depends=[Biobase BiocParallel cluster flexclust gss mvtnorm SPEM zoo]; }; + TNBC_CMS = derive2 { name="TNBC.CMS"; version="1.10.0"; sha256="1iz2jb895hsliavk9g93mvvccla461cmifmsam3qdscj09gfl17x"; depends=[e1071 forestplot GGally ggplot2 ggpubr GSVA pheatmap pracma quadprog R_utils RColorBrewer SummarizedExperiment survival]; }; + TOAST = derive2 { name="TOAST"; version="1.7.1"; sha256="1r0kpk6i1b5r5swp4l5yw8mid719li4yqa82p9kzmgg7z0xxvmaz"; depends=[corpcor EpiDISH limma nnls SummarizedExperiment]; }; + TPP = derive2 { name="TPP"; version="3.22.0"; sha256="1sa5scbv3ck17v02czmj8c9kva5xzdbcqpfm4l9p4wn8xw6v9hk3"; depends=[Biobase biobroom broom data_table doParallel dplyr foreach futile_logger ggplot2 gridExtra knitr limma magrittr MASS mefa nls2 openxlsx plyr purrr RColorBrewer RCurl reshape2 rmarkdown stringr tibble tidyr VennDiagram VGAM]; }; + TPP2D = derive2 { name="TPP2D"; version="1.10.0"; sha256="183gf3v1nj0nqll817whxdif0kiwscil88ig0vjj1hn3936q59v6"; depends=[BiocParallel doParallel dplyr foreach ggplot2 limma MASS openxlsx RCurl stringr tidyr]; }; + TRESS = derive2 { name="TRESS"; version="1.0.0"; sha256="0zmzbpzhcsykbpifs5m8md2lhami0ya7y9sf2rdmadgbx17gvzj7"; depends=[AnnotationDbi GenomicFeatures GenomicRanges IRanges Matrix matrixStats Rsamtools rtracklayer S4Vectors]; }; + TRONCO = derive2 { name="TRONCO"; version="2.26.0"; sha256="0xjjv67mcgb90f6r3i6qy9d8k6sif4asq7qiiq1bhs90806jrrsb"; depends=[bnlearn cgdsr circlize doParallel foreach gridExtra gtable gtools igraph iterators R_matlab RColorBrewer Rgraphviz scales xtable]; }; + TSCAN = derive2 { name="TSCAN"; version="1.32.0"; sha256="1vkkwwdhh80j67clkyn7x9ld86dhisgxp8kgv86va501fgpm11qk"; depends=[combinat DelayedArray fastICA ggplot2 gplots igraph Matrix mclust mgcv plyr S4Vectors shiny SingleCellExperiment SummarizedExperiment TrajectoryUtils]; }; + TSRchitect = derive2 { name="TSRchitect"; version="1.20.0"; sha256="1v9zz8ny9rwkyz98cv49l9ilh68h8mvm2x44n8i8rvjayc50zi9i"; depends=[AnnotationHub BiocGenerics BiocParallel dplyr GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges readxl Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; + TTMap = derive2 { name="TTMap"; version="1.16.0"; sha256="1zbngv7zgnsjp601q0958547d9fxg7dlj36sywg0qa322mbj3skb"; depends=[Biobase colorRamps rgl SummarizedExperiment]; }; + TVTB = derive2 { name="TVTB"; version="1.20.0"; sha256="0vpx7sryvwzrxlj2mav3mr27k3lbi1mn32ajlzypvsz1aw1pzqm5"; depends=[AnnotationFilter BiocGenerics BiocParallel Biostrings ensembldb ensemblVEP GenomeInfoDb GenomicRanges GGally ggplot2 Gviz IRanges limma reshape2 Rsamtools S4Vectors SummarizedExperiment VariantAnnotation]; }; + TarSeqQC = derive2 { name="TarSeqQC"; version="1.24.0"; sha256="0303kqwgs442vf0j0rpw15qjk6snvayd9rrjbll8gjnv34xzmw7d"; depends=[BiocGenerics BiocParallel Biostrings cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 Hmisc IRanges openxlsx plyr reshape2 Rsamtools S4Vectors]; }; + TargetDecoy = derive2 { name="TargetDecoy"; version="1.0.0"; sha256="0bvby24gqwkxmcq0d9c5ix5kx1svc59vcil5xv0fmsdzp9bgv4c4"; depends=[ggplot2 ggpubr mzID mzR]; }; + TargetScore = derive2 { name="TargetScore"; version="1.32.0"; sha256="15yh0ms1i38541kf7lxjk3xs9gpm4ixaykq6mhn572slkxdx737y"; depends=[Matrix pracma]; }; + TargetSearch = derive2 { name="TargetSearch"; version="1.50.0"; sha256="0ikwbgrjp8i5g27acs4qzr8v7gzky209w3zdb6877y9hpvl5kvyv"; depends=[assertthat ncdf4]; }; + TileDBArray = derive2 { name="TileDBArray"; version="1.4.0"; sha256="007qdq6w0i9b2mbcdbdjm62nzwy15scsxml6fqr0fwgzjfzvzb0z"; depends=[DelayedArray Rcpp S4Vectors tiledb]; }; + TimeSeriesExperiment = derive2 { name="TimeSeriesExperiment"; version="1.12.0"; sha256="0fphnkkd3i7zf33a9lhw95n80vzv1z7fmn7mhrfb949yz4jdvk7d"; depends=[DESeq2 dplyr dynamicTreeCut edgeR ggplot2 Hmisc limma magrittr proxy S4Vectors SummarizedExperiment tibble tidyr vegan viridis]; }; + TimiRGeN = derive2 { name="TimiRGeN"; version="1.4.0"; sha256="1lpvw24gnm1rdl4p2vxh07z82x7wcwcpmak7rjh3yq409lwi72i0"; depends=[biomaRt clusterProfiler dplyr FreqProf ggdendro gghighlight ggplot2 gplots gtools igraph Mfuzz MultiAssayExperiment RCy3 readxl reshape2 rWikiPathways scales stringr tidyr]; }; + TissueEnrich = derive2 { name="TissueEnrich"; version="1.14.0"; sha256="0gbk3773b1xm801jh4nmys06917xy31j64mfc3pjap4rsssqbg2r"; depends=[dplyr ensurer ggplot2 GSEABase SummarizedExperiment tidyr]; }; + TitanCNA = derive2 { name="TitanCNA"; version="1.32.0"; sha256="1syfhh66qgayxq6apyzgj9vxj4k52w09ryfip7briii7xip9b414"; depends=[BiocGenerics data_table dplyr foreach GenomeInfoDb GenomicRanges IRanges VariantAnnotation]; }; + TnT = derive2 { name="TnT"; version="1.16.0"; sha256="1l1fkxkl2q0h5abjbmzz2chm4xavd6ysigsqqa7d2afgvgn92p2l"; depends=[Biobase data_table GenomeInfoDb GenomicRanges htmlwidgets IRanges jsonlite knitr S4Vectors]; }; + ToxicoGx = derive2 { name="ToxicoGx"; version="1.4.0"; sha256="0l4a3263h6vjxrh6xawjz1hn4ksh7r0a7fch1k2sm3jb0rwhhgdp"; depends=[assertthat Biobase BiocParallel caTools CoreGx data_table downloader dplyr ggplot2 jsonlite limma magrittr reshape2 S4Vectors scales SummarizedExperiment tibble tidyr]; }; + TraRe = derive2 { name="TraRe"; version="1.2.0"; sha256="1sz7cb3fcpzi3hg5w27cx19366p0767hz8v945s35z9iax2a7bdp"; depends=[BiocParallel dqrng ggplot2 glmnet gplots gtools hash igraph matrixStats pvclust R_utils SummarizedExperiment vbsr]; }; + TrajectoryGeometry = derive2 { name="TrajectoryGeometry"; version="1.2.0"; sha256="1agvbkdkzfg72m8iy9wawgrsgps12d6ml5zprab8q9qx5ajsp7y4"; depends=[ggplot2 pracma rgl]; }; + TrajectoryUtils = derive2 { name="TrajectoryUtils"; version="1.2.0"; sha256="0pzm1h69bg04a2v09r8c6pb3pix6f3n5dylvbv7wsp574qfaqyd1"; depends=[igraph Matrix S4Vectors SingleCellExperiment SummarizedExperiment]; }; + TransView = derive2 { name="TransView"; version="1.38.0"; sha256="1idhac2vrjyhx1750xx3d9pbnpi5404wn9ppqsdgcscyb124p1ph"; depends=[BiocGenerics GenomicRanges gplots IRanges Rhtslib S4Vectors zlibbioc]; }; + Travel = derive2 { name="Travel"; version="1.2.0"; sha256="0knj8ih6sfa9iqm0b327bmn2cr15g01yyfm0nlv68xvvb7d85ij7"; depends=[Rcpp]; }; + TreeAndLeaf = derive2 { name="TreeAndLeaf"; version="1.6.1"; sha256="155nnq466v5li63idj5iylydl60pfnqrhqb300qjcsw2yi3fvdv4"; depends=[ape igraph RedeR]; }; + TreeSummarizedExperiment = derive2 { name="TreeSummarizedExperiment"; version="2.2.0"; sha256="168n1y6qzlssf6r3di49gmd2vlkspgf82f70q0rwkp8my46wiiz1"; depends=[ape BiocGenerics BiocParallel Biostrings dplyr IRanges rlang S4Vectors SingleCellExperiment SummarizedExperiment treeio]; }; + Trendy = derive2 { name="Trendy"; version="1.16.0"; sha256="0apmyzkzm599f3a8p2qgc8frkpy22kv3295q4wrrwl028ky8ksjx"; depends=[BiocParallel DT gplots magrittr S4Vectors segmented shiny shinyFiles SummarizedExperiment]; }; + TurboNorm = derive2 { name="TurboNorm"; version="1.42.0"; sha256="0zzkjyqpbnm6974xcik8jjkapplzlbqcq7y1ml1xwg79hkfvvhfr"; depends=[affy convert lattice limma marray]; }; + TypeInfo = derive2 { name="TypeInfo"; version="1.60.0"; sha256="0b1wp6cdcdd0r92rvkb3n0zgp6zy2421akqmip9i8bbfwxvf1m2w"; depends=[]; }; + UMI4Cats = derive2 { name="UMI4Cats"; version="1.4.0"; sha256="004gakcsg9wnns17irps57wn70m4ws8xh2yhb34g1a7jvzwfyss6"; depends=[annotate BiocFileCache BiocGenerics Biostrings BSgenome cowplot DESeq2 dplyr fda GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges magick magrittr org_Hs_eg_db R_utils rappdirs Rbowtie2 RColorBrewer regioneR reshape2 rlang Rsamtools S4Vectors scales ShortRead stringr SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene zoo]; }; + UNDO = derive2 { name="UNDO"; version="1.36.0"; sha256="0vymwbngyhz1b2ndbm3d3szfb8206ci9v6vi6jmzqq3y1my316r9"; depends=[Biobase BiocGenerics boot MASS nnls]; }; + Ularcirc = derive2 { name="Ularcirc"; version="1.12.0"; sha256="02cc5hw25m8dkm0g2riffalmfkr1wfxvy84s7lw29npiyx0s9hjk"; depends=[AnnotationDbi AnnotationHub BiocGenerics Biostrings BSgenome data_table DT GenomeInfoDb GenomeInfoDbData GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel gsubfn mirbase_db moments Organism_dplyr S4Vectors shiny shinydashboard shinyFiles shinyjs Sushi yaml]; }; + UniProt_ws = derive2 { name="UniProt.ws"; version="2.34.0"; sha256="0ldds8x2m6na24lsdfy6xgnkmxv61ji1vv5nnflw9xcn3cp0nqfw"; depends=[AnnotationDbi BiocFileCache BiocGenerics rappdirs RCurl RSQLite]; }; + Uniquorn = derive2 { name="Uniquorn"; version="2.14.0"; sha256="188clr002mmp0g0kc04mwhgq6cqfygkmhhc18wjjwpy9cczr1gg8"; depends=[doParallel foreach GenomicRanges IRanges R_utils stringr VariantAnnotation WriteXLS]; }; + VAExprs = derive2 { name="VAExprs"; version="1.0.0"; sha256="0yccdqb5k5wzha0nl5zsp61iagyafbxfb3yda9x7vicalg8chsdh"; depends=[CatEncoders DeepPINCS DiagrammeR gradDescent keras mclust purrr scater SingleCellExperiment SummarizedExperiment tensorflow]; }; + VCFArray = derive2 { name="VCFArray"; version="1.10.0"; sha256="0kqqw00nwcigqjlk5h61b4y0q0ss3h8n8cjx5jblf74bzf69ppxm"; depends=[BiocGenerics DelayedArray GenomicFiles GenomicRanges Rsamtools S4Vectors VariantAnnotation]; }; + VERSO = derive2 { name="VERSO"; version="1.4.0"; sha256="1sbnl3lz9f3bvxzlcdcp1bz2jwyyv3acsahzhwgxhd25b9s4kla0"; depends=[ape Rfast]; }; + VaSP = derive2 { name="VaSP"; version="1.6.0"; sha256="1z98284yysnpkg01rr61a4q194xllq1zlp9drqfxfldnyyipby9y"; depends=[ballgown cluster GenomeInfoDb GenomicAlignments GenomicRanges IRanges matrixStats Rsamtools S4Vectors Sushi]; }; + VanillaICE = derive2 { name="VanillaICE"; version="1.56.0"; sha256="1vlajwp310aix67pvsm5ih5m8m5n5wv23h5nfq23m6hy8nxkygwq"; depends=[Biobase BiocGenerics BSgenome_Hsapiens_UCSC_hg18 crlmm data_table foreach GenomeInfoDb GenomicRanges IRanges lattice MatrixGenerics matrixStats oligoClasses S4Vectors SummarizedExperiment]; }; + VarCon = derive2 { name="VarCon"; version="1.2.0"; sha256="1iay3m5mf9ck46zpkqw3hf7cv00jgvg05k8705wkgaj6gjajs7ga"; depends=[Biostrings BSgenome GenomicRanges ggplot2 IRanges shiny shinycssloaders shinyFiles]; }; + VariantAnnotation = derive2 { name="VariantAnnotation"; version="1.40.0"; sha256="1r9kayp0hxcwls08lv2fh0cmf9ks0lqx3k31c1zn4asw4dyqpgva"; depends=[AnnotationDbi Biobase BiocGenerics Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges MatrixGenerics Rhtslib Rsamtools rtracklayer S4Vectors SummarizedExperiment XVector zlibbioc]; }; + VariantExperiment = derive2 { name="VariantExperiment"; version="1.8.0"; sha256="0f9zm5jcdw4ziqaynm6kn73n2pislrgwa7lwqmwmkprzirckpkk5"; depends=[Biostrings DelayedArray DelayedDataFrame GDSArray gdsfmt GenomicRanges IRanges S4Vectors SeqArray SeqVarTools SNPRelate SummarizedExperiment]; }; + VariantFiltering = derive2 { name="VariantFiltering"; version="1.30.0"; sha256="15js8xzi9rsgkjkqcshzk3r3g85kdnxn5v2hi6l5s4yxj9lnq12p"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicFeatures GenomicRanges GenomicScores graph Gviz IRanges RBGL Rsamtools S4Vectors shiny shinyjs shinythemes shinyTree SummarizedExperiment VariantAnnotation XVector]; }; + VariantTools = derive2 { name="VariantTools"; version="1.36.0"; sha256="0079dsgav4q03c4i0dhggc88iifd828n73kjv3sahim9akafdshl"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicRanges IRanges Matrix Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; + VegaMC = derive2 { name="VegaMC"; version="3.32.0"; sha256="19vjzy0a9jcndgyh9vfihlk6pbld28pf1px84km03xr3hrlsp1fm"; depends=[Biobase biomaRt]; }; + VennDetail = derive2 { name="VennDetail"; version="1.10.0"; sha256="16vhjfi8hyjs8x2s278j4dfjyhsc2jnh1s8h10ddkbrkynckdf20"; depends=[dplyr futile_logger ggplot2 magrittr purrr tibble UpSetR VennDiagram]; }; + ViSEAGO = derive2 { name="ViSEAGO"; version="1.8.0"; sha256="0chb10y97j7kv00i4wbnkxyd7iwf28ybdnkd4ijsamf7ddl814hq"; depends=[AnnotationDbi AnnotationForge biomaRt data_table dendextend DiagrammeR DT dynamicTreeCut fgsea ggplot2 GO_db GOSemSim heatmaply htmlwidgets igraph plotly processx R_utils RColorBrewer scales topGO UpSetR]; }; + VplotR = derive2 { name="VplotR"; version="1.4.0"; sha256="0ahf7nqxymx46w3rs8qq6jpvw41avzmssw7apnax13x9gn29kbg6"; depends=[cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges magrittr RColorBrewer reshape2 Rsamtools S4Vectors zoo]; }; + Wrench = derive2 { name="Wrench"; version="1.12.0"; sha256="1vzv7sswijgb8nq58yrc19wlw2nnpjvans86fqqzs4p8wvq8j06n"; depends=[limma locfit matrixStats]; }; + XCIR = derive2 { name="XCIR"; version="1.7.0"; sha256="0n42pw01wv1sk06hby9kwijx6zwaw4lrlpsa0wlkrkf323slkllw"; depends=[biomaRt data_table ggplot2 IRanges readxl S4Vectors seqminer VariantAnnotation]; }; + XDE = derive2 { name="XDE"; version="2.40.0"; sha256="0f7liqy2gf6ka7wjj591yi8805m3nn21c440vz9iqsanszxnsi6q"; depends=[Biobase BiocGenerics genefilter GeneMeta gtools mvtnorm RColorBrewer siggenes]; }; + XINA = derive2 { name="XINA"; version="1.12.0"; sha256="14j1rn3p7i0rlqkbbg0a6pyhb97ifzvsbw6vfxw9pna7zv7rbhsp"; depends=[alluvial ggplot2 gridExtra igraph mclust plyr STRINGdb]; }; + XNAString = derive2 { name="XNAString"; version="1.2.0"; sha256="1rpcvn54a6s3iwmdg96rshilr1mqcb1nlbvzbyp5xi55km7iwm8i"; depends=[Biostrings BSgenome data_table formattable future_apply GenomicRanges IRanges Rcpp S4Vectors stringi stringr]; }; + XVector = derive2 { name="XVector"; version="0.34.0"; sha256="07r4qgmnifw9jk2srjg0cvl310j0f9y35jrg0zqhlvhmyhg6n2c0"; depends=[BiocGenerics IRanges S4Vectors zlibbioc]; }; + Xeva = derive2 { name="Xeva"; version="1.10.0"; sha256="0c4ak66kl13gp18h1xahhfy9hhx0cpspncigdznjqpxwgrbs1qpf"; depends=[BBmisc Biobase ComplexHeatmap doParallel downloader ggplot2 nlme PharmacoGx Rmisc scales]; }; + YAPSA = derive2 { name="YAPSA"; version="1.19.0"; sha256="0fgcbskz96p5815nywsnqv2gzn7g93m438hpd5rpg85srg4wrpdj"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 circlize ComplexHeatmap corrplot dendextend doParallel dplyr GenomeInfoDb GenomicRanges GetoptLong ggbeeswarm ggplot2 gridExtra gtrellis KEGGREST limSolve magrittr PMCMR pracma reshape2 SomaticSignatures VariantAnnotation]; }; + a4 = derive2 { name="a4"; version="1.42.0"; sha256="0mkgim93441zxhn4wmbin9ydl94srsawis0xwx479l0byj88n07m"; depends=[a4Base a4Classif a4Core a4Preproc a4Reporting]; }; + a4Base = derive2 { name="a4Base"; version="1.42.0"; sha256="0rddxnflvbc6z4sj2h8js8yfh0zhrrwj8fk00wicaqp4rkr5yaxy"; depends=[a4Core a4Preproc annaffy Biobase genefilter glmnet gplots limma mpm multtest]; }; + a4Classif = derive2 { name="a4Classif"; version="1.42.0"; sha256="0q50d41n7drj5c9x6njyvzr6bj7glmkp1vpyz6cpj97j2v9nikwb"; depends=[a4Core a4Preproc Biobase glmnet pamr ROCR varSelRF]; }; + a4Core = derive2 { name="a4Core"; version="1.42.0"; sha256="074aa52y6c70417lxwrclk613gbs7zv3326g9ndbbzzs5pmnh1y0"; depends=[Biobase glmnet]; }; + a4Preproc = derive2 { name="a4Preproc"; version="1.42.0"; sha256="1qzr54w1qys1ppd71i5b57503dijfnnbn516a2mfk5l9l7wr728d"; depends=[Biobase BiocGenerics]; }; + a4Reporting = derive2 { name="a4Reporting"; version="1.42.0"; sha256="1vyah71gm4ngsgy0y10cdxa9b1g810gqa5pbvb3krh5i6h35smwr"; depends=[xtable]; }; + aCGH = derive2 { name="aCGH"; version="1.72.0"; sha256="1r1q6iq3g7svfn5m4jxlxp413djb40mvf6lh595y86sgwav5k6l4"; depends=[Biobase cluster multtest survival]; }; + abseqR = derive2 { name="abseqR"; version="1.12.0"; sha256="1v9g71x689ly107c0qmc5iv8qk63nn6lp7yd03jf7hlcafmvqsvz"; depends=[BiocParallel BiocStyle circlize flexdashboard ggcorrplot ggdendro ggplot2 gridExtra knitr plotly plyr png RColorBrewer reshape2 rmarkdown stringr vegan VennDiagram]; }; + acde = derive2 { name="acde"; version="1.24.0"; sha256="13ks87am73m3bjn9ljapxml2a9cxdpgv9flwvly8aqmi3ndxyqi6"; depends=[boot]; }; + adSplit = derive2 { name="adSplit"; version="1.64.0"; sha256="1b4ck371h3a76m5h0brvlzsyg1g6q5fjrhra5hqv9pwxr330h9r2"; depends=[AnnotationDbi Biobase cluster GO_db KEGGREST multtest]; }; + adductomicsR = derive2 { name="adductomicsR"; version="1.10.0"; sha256="0cnvxrk0h3r6jpa4g4qismg6zk5c7rf8lqixg89c24i98gffkbcl"; depends=[adductData ade4 AnnotationHub bootstrap data_table doSNOW dplyr DT ExperimentHub fastcluster foreach fpc mzR OrgMassSpecR pastecs pracma RcppEigen reshape2 rvest smoother zoo]; }; + affxparser = derive2 { name="affxparser"; version="1.66.0"; sha256="1bd0f8ifj6l7dx2m3wpmd0mji2gdf39mzgcjf9lbvvmbqnbxbcal"; depends=[]; }; + affy = derive2 { name="affy"; version="1.72.0"; sha256="0z66pyn2020h3x22xabkmnjxb20kbgblivvk7mqjk9134wvvf15a"; depends=[affyio Biobase BiocGenerics BiocManager preprocessCore zlibbioc]; }; + affyContam = derive2 { name="affyContam"; version="1.52.0"; sha256="1vw3nxg9jvlw0zg9h70w2ww8l42qpyvgf12hsla9hyyfhj3m6i9f"; depends=[affy affydata Biobase]; }; + affyILM = derive2 { name="affyILM"; version="1.46.0"; sha256="18rnqmpgbmjy4pvian6g7q8r0xm827wvksy7y3pmi9m7af1dgnvv"; depends=[affxparser affy Biobase gcrma]; }; + affyPLM = derive2 { name="affyPLM"; version="1.70.0"; sha256="0mwfhz36qiirifrrgc2fcac1w1a1pfdb2474mgw13xk6xjvvgsab"; depends=[affy Biobase BiocGenerics gcrma preprocessCore zlibbioc]; }; + affycomp = derive2 { name="affycomp"; version="1.70.0"; sha256="0kawlfff82ikrbrfyyy38zm5wj5xdri2ii9wgwilnq50z5qc6r21"; depends=[Biobase]; }; + affycoretools = derive2 { name="affycoretools"; version="1.66.0"; sha256="1ccyaj129ii9f47r41qsy34y6ck4wna55j8vz3v3hbldddn93f40"; depends=[affy AnnotationDbi Biobase BiocGenerics DBI edgeR gcrma ggplot2 Glimma GOstats gplots hwriter lattice limma oligoClasses ReportingTools RSQLite S4Vectors xtable]; }; + affyio = derive2 { name="affyio"; version="1.64.0"; sha256="02lqdq8hcldkf9qbyhhllkm3smpqc51sn2d9gbkm74r96fx37lvm"; depends=[zlibbioc]; }; + affylmGUI = derive2 { name="affylmGUI"; version="1.68.0"; sha256="02fdivy8zh1vg8vxnhmf6hsn3kc6k5q115903kmzmf3zzvypyi57"; depends=[affy affyio affyPLM AnnotationDbi BiocGenerics BiocManager gcrma limma R2HTML tkrplot xtable]; }; + aggregateBioVar = derive2 { name="aggregateBioVar"; version="1.4.0"; sha256="1wbfp1pf62di6pzxsf36lmzk6y9dllz1n4iv3mhpb1x8cvy4hqqk"; depends=[Matrix rlang S4Vectors SingleCellExperiment SummarizedExperiment tibble]; }; + agilp = derive2 { name="agilp"; version="3.26.0"; sha256="02cyc2y4v3y16zlrnax2c96b2qfxj6b2j37ps4g2gdqgas08n9xp"; depends=[]; }; + airpart = derive2 { name="airpart"; version="1.2.0"; sha256="0289r5kkgndrbv9m3h2wwvc3j2j0yc8shq4di0nxy8kxaqng2nqa"; depends=[apeglm clue ComplexHeatmap dplyr dynamicTreeCut emdbook forestplot ggplot2 lpSolve matrixStats mclust pbapply plyr RColorBrewer rlang S4Vectors scater SingleCellExperiment smurf SummarizedExperiment]; }; + alevinQC = derive2 { name="alevinQC"; version="1.10.0"; sha256="1nbwdx4531pm72rcmd5mmpy2bybil7vkwn4zibccqvwgyi8745ma"; depends=[cowplot dplyr DT GGally ggplot2 rjson rlang rmarkdown shiny shinydashboard tximport]; }; + alpine = derive2 { name="alpine"; version="1.20.0"; sha256="0ddnk23ncmbm636fqclmcav2j3xqz25h1magdjv2x79hjz1hkqcq"; depends=[Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph IRanges RBGL Rsamtools S4Vectors speedglm stringr SummarizedExperiment]; }; + alsace = derive2 { name="alsace"; version="1.30.0"; sha256="17adr64g3l2syj0shi57nrvx105w7wrkiqm0qp3hwlk1ivmnadzn"; depends=[ALS ptw]; }; + altcdfenvs = derive2 { name="altcdfenvs"; version="2.56.0"; sha256="0awn93mcjrgim4rc5ayiy9x7zpdfrmvnxa33y68hjvghl5xqq57y"; depends=[affy Biobase BiocGenerics Biostrings hypergraph makecdfenv S4Vectors]; }; + amplican = derive2 { name="amplican"; version="1.16.0"; sha256="1p4n0bm4hsw20iyxghnc7k06q2w3hs044zsyl5ysd9xxiggi628l"; depends=[BiocGenerics BiocParallel Biostrings clusterCrit data_table dplyr GenomeInfoDb GenomicRanges ggplot2 ggthemes gridExtra gtable IRanges knitr Matrix matrixStats Rcpp rmarkdown S4Vectors ShortRead stringr waffle]; }; + animalcules = derive2 { name="animalcules"; version="1.10.0"; sha256="0l7lyw1a51piq20lh49ss4c2i75lrs1xq532jgf65n8vkm8asc88"; depends=[ape assertthat biomformat caret covr DESeq2 dplyr DT forcats ggplot2 glmnet GUniFrac lattice limma magrittr Matrix MultiAssayExperiment plotly plotROC rentrez reshape2 S4Vectors scales shiny shinyjs SummarizedExperiment tibble tsne umap vegan XML]; }; + annaffy = derive2 { name="annaffy"; version="1.66.0"; sha256="0crj37v571005brdd0ypfx2a7d1f829xxj2hahp2gy8aj9xm4s8l"; depends=[AnnotationDbi Biobase BiocManager DBI GO_db]; }; + annmap = derive2 { name="annmap"; version="1.36.0"; sha256="0j8zvg3670dg0smyrdwsc42h64n4c6rm855zawlwgchx3vdgb8gn"; depends=[Biobase BiocGenerics DBI digest genefilter GenomicRanges IRanges lattice RMySQL Rsamtools]; }; + annotate = derive2 { name="annotate"; version="1.72.0"; sha256="0p7q5hdk7003q72vg4hrgdzn463spybxhrkvcq3a6l6jkgy9sf84"; depends=[AnnotationDbi Biobase BiocGenerics DBI httr XML xtable]; }; + annotationTools = derive2 { name="annotationTools"; version="1.68.0"; sha256="0grdswbf8nj0qwl0n5pqsir9242dry85j6m688j81gwwjgmzidvh"; depends=[Biobase]; }; + annotatr = derive2 { name="annotatr"; version="1.20.0"; sha256="1ha2wn56cdab4p3wdwv4xlqjsgl7sd8phbx71qbclrbdwpq2mi7i"; depends=[AnnotationDbi AnnotationHub dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges readr regioneR reshape2 rtracklayer S4Vectors]; }; + anota = derive2 { name="anota"; version="1.42.0"; sha256="0agvcpb3lr9v55h53ywf662gpxayivxacv8dcm526cc8i8hdqa9f"; depends=[multtest qvalue]; }; + anota2seq = derive2 { name="anota2seq"; version="1.16.0"; sha256="0h03rbjnl16mn521fvxcn3d7ik5l52klwpjx45rk8js0alg5z4xf"; depends=[DESeq2 edgeR limma multtest qvalue RColorBrewer SummarizedExperiment]; }; + antiProfiles = derive2 { name="antiProfiles"; version="1.34.0"; sha256="0h9jvb579vy8744mmhg5m7964f24pwm4v02fivxq0z06ccbm79dm"; depends=[locfit matrixStats]; }; + apComplex = derive2 { name="apComplex"; version="2.60.0"; sha256="09014csh7wic7hsjri45ply2fkg93gq7xp4ckaj0yr4invjrw3m3"; depends=[graph org_Sc_sgd_db RBGL Rgraphviz]; }; + apeglm = derive2 { name="apeglm"; version="1.16.0"; sha256="11w4vyc1sllmm5lh42krhidazid78n4s3lhikpy9kk2l57jmifbr"; depends=[emdbook GenomicRanges Rcpp RcppEigen RcppNumerical SummarizedExperiment]; }; + appreci8R = derive2 { name="appreci8R"; version="1.12.0"; sha256="10sxxsp1c3mmhf4pgqb71vpj3izy16dcm30gklw5axkv45lkpp7f"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 COSMIC_67 DT GenomicFeatures GenomicRanges GenomicScores Homo_sapiens IRanges MafDb_1Kgenomes_phase3_hs37d5 MafDb_ExAC_r1_0_hs37d5 MafDb_gnomADex_r2_1_hs37d5 openxlsx PolyPhen_Hsapiens_dbSNP131 rentrez Rsamtools rsnps S4Vectors seqinr shiny shinyjs SIFT_Hsapiens_dbSNP137 SNPlocs_Hsapiens_dbSNP144_GRCh37 stringr SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation XtraSNPlocs_Hsapiens_dbSNP144_GRCh37]; }; + aroma_light = derive2 { name="aroma.light"; version="3.24.0"; sha256="12qa85hsp8d1xhgn27iymknbhpnp9bd7hsgqxwvp1i8kki06z5hp"; depends=[matrixStats R_methodsS3 R_oo R_utils]; }; + arrayMvout = derive2 { name="arrayMvout"; version="1.52.0"; sha256="180bdk6p1lmd24ihc90b8r6dgr0vgclassgzblnwd95ya68a25xq"; depends=[affy affyContam Biobase lumi mdqc parody]; }; + arrayQuality = derive2 { name="arrayQuality"; version="1.72.0"; sha256="1qlg9xb17sgxfbsnxqs48qzmxc5fhchv5sszxxafkjd0pbfzkllv"; depends=[gridBase hexbin limma marray RColorBrewer]; }; + arrayQualityMetrics = derive2 { name="arrayQualityMetrics"; version="3.50.0"; sha256="034xdnqvgwqy1wh17mmjzmhzj0iy8sdx4al0ngdxdfnxcjk4gfny"; depends=[affy affyPLM beadarray Biobase genefilter gridSVG Hmisc hwriter lattice latticeExtra limma RColorBrewer setRNG svglite vsn XML]; }; + artMS = derive2 { name="artMS"; version="1.12.0"; sha256="0gaxd759zv273jh15l5zifh7k995sx8yda097lhjafdph7jmf0nh"; depends=[AnnotationDbi bit64 circlize cluster corrplot data_table dplyr getopt ggdendro ggplot2 ggrepel gplots limma MSstats openxlsx org_Hs_eg_db pheatmap plotly plyr RColorBrewer scales seqinr stringr tidyr UpSetR VennDiagram yaml]; }; + atSNP = derive2 { name="atSNP"; version="1.10.0"; sha256="0yy731ivpcrmjwpljxzvlk7n2pygydw2q58gq90d1midch1nf0lx"; depends=[BiocFileCache BiocParallel BSgenome data_table ggplot2 lifecycle motifStack rappdirs Rcpp testthat]; }; + atena = derive2 { name="atena"; version="1.0.0"; sha256="132xp8cczvd7hznhdl1a7h410khahf8yqz3zr9gdyrni1viabxm9"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges IRanges Matrix Rsamtools S4Vectors sparseMatrixStats SQUAREM SummarizedExperiment]; }; + attract = derive2 { name="attract"; version="1.46.0"; sha256="1vh6wgi6wmjry25khzbq32s67jjn581zjhhfqbl7y2dkfq2fvybf"; depends=[AnnotationDbi Biobase cluster GOstats KEGGREST limma org_Hs_eg_db reactome_db]; }; + autonomics = derive2 { name="autonomics"; version="1.2.0"; sha256="1j0nsbdw7sahy031bvp8pg8a1fg7ql0is65d0mfh8345lbmr29sn"; depends=[abind assertive BiocFileCache BiocGenerics colorspace data_table edgeR ggplot2 ggrepel gridExtra limma magrittr matrixStats MultiAssayExperiment pcaMethods R_utils rappdirs readxl rlang S4Vectors scales stringi SummarizedExperiment tidyr]; }; + awst = derive2 { name="awst"; version="1.2.0"; sha256="0qxi4f7ngfsx17q9szhl95bhihcfx36bw4n175zyfdnac6cb9kap"; depends=[SummarizedExperiment]; }; + bacon = derive2 { name="bacon"; version="1.22.0"; sha256="13dhma34j9ggryainn4x6qvd3hphpxks5gf0mysia00r9hhpwwlc"; depends=[BiocParallel ellipse ggplot2]; }; + ballgown = derive2 { name="ballgown"; version="2.26.0"; sha256="0fiky82arvgzgxrm4bqn74m5kngqpdaqf6ks4cr89nlnhfq0v6rf"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges limma RColorBrewer rtracklayer S4Vectors sva]; }; + bambu = derive2 { name="bambu"; version="2.0.0"; sha256="1r0y3rzqhcasrshranh4nlbm2ahphzizy907xzka0kkkaz7g9zqr"; depends=[BiocGenerics BiocParallel data_table dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rcpp RcppArmadillo Rsamtools S4Vectors SummarizedExperiment tidyr xgboost]; }; + bamsignals = derive2 { name="bamsignals"; version="1.26.0"; sha256="03m3yaagplh7j4q5hp3cfcdqwsnh1pwrlla9cv3ajnfd83s8ncqv"; depends=[BiocGenerics GenomicRanges IRanges Rcpp Rhtslib zlibbioc]; }; + banocc = derive2 { name="banocc"; version="1.18.0"; sha256="0p5v601j1lkgh9prlvalp3xpqw87xq7ql0bak212443n15pfj3a4"; depends=[coda mvtnorm rstan stringr]; }; + barcodetrackR = derive2 { name="barcodetrackR"; version="1.2.0"; sha256="1z7sj2ykp34g9bf0x0s3qavrprbiaksgk5r4hsakb24jjbi65jnh"; depends=[circlize cowplot dplyr ggdendro ggplot2 ggridges magrittr plyr proxy RColorBrewer rlang S4Vectors scales shiny SummarizedExperiment tibble tidyr vegan viridis]; }; + basecallQC = derive2 { name="basecallQC"; version="1.18.0"; sha256="0nnrcjmmva6axnf3hqs8ga6sqwhfi5v27gdvqpdpc5h1sq4mx0vm"; depends=[data_table dplyr DT ggplot2 knitr lazyeval magrittr prettydoc raster rmarkdown ShortRead stringr tidyr XML yaml]; }; + basilisk = derive2 { name="basilisk"; version="1.6.0"; sha256="1cdkpngv9qybd9yxc3i2201p433vkkahs71v28x6lgs5l2wz3m1a"; depends=[basilisk_utils dir_expiry reticulate]; }; + basilisk_utils = derive2 { name="basilisk.utils"; version="1.6.0"; sha256="0578rq2yz24sv7anb7vp0a0y35944ag1l8ca6haanb03wl97wm99"; depends=[dir_expiry]; }; + batchelor = derive2 { name="batchelor"; version="1.10.0"; sha256="0axkic11bwjbw8apwxx6p51s7jvlwhq7xi1bdknn54k86axq84dr"; depends=[beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats igraph Matrix Rcpp ResidualMatrix S4Vectors ScaledMatrix scuttle SingleCellExperiment SummarizedExperiment]; }; + bayNorm = derive2 { name="bayNorm"; version="1.12.0"; sha256="1rxg42a7dl69xfzparz9mzyjbx966z7h5nl54392h29x224hmckv"; depends=[BB BiocParallel doSNOW fitdistrplus foreach iterators locfit MASS Matrix Rcpp RcppArmadillo RcppProgress SingleCellExperiment SummarizedExperiment]; }; + baySeq = derive2 { name="baySeq"; version="2.28.0"; sha256="1zgxwb287ccz4wqsjxmffknnzziv12l4yrw7df912dxz6yccvd8r"; depends=[abind edgeR GenomicRanges]; }; + bcSeq = derive2 { name="bcSeq"; version="1.16.0"; sha256="03zmnlg83lx94ialdps3bsyaip4nzj06xvx0lvppippp6w6zg0z1"; depends=[Biostrings Matrix Rcpp]; }; + beachmat = derive2 { name="beachmat"; version="2.10.0"; sha256="1l8c9q35mf90ckb366bcfqa0v2gw7ahs2h362j7cwv8fp39h4mpb"; depends=[BiocGenerics DelayedArray Matrix Rcpp]; }; + beadarray = derive2 { name="beadarray"; version="2.44.0"; sha256="05m155air8a6s2awqmw4z6nfvm7zb58z4yp1967a1g1fygb3s9s2"; depends=[AnnotationDbi BeadDataPackR Biobase BiocGenerics GenomicRanges ggplot2 hexbin illuminaio IRanges limma reshape2]; }; + beadarraySNP = derive2 { name="beadarraySNP"; version="1.60.0"; sha256="0ypx3ag1i6g2zp75waag9nf0wawhx9k73yfbvx533kd9acplbrbq"; depends=[Biobase quantsmooth]; }; + benchdamic = derive2 { name="benchdamic"; version="1.0.0"; sha256="1qrxhfg4fwr4gcs3zycksxxzjg4mjzcgqazn6907i00pfh3yi2pr"; depends=[ALDEx2 BiocParallel corncob cowplot DESeq2 edgeR ffpe ggdendro ggplot2 limma MAST metagenomeSeq MGLM phyloseq plyr RColorBrewer reshape2 Seurat SummarizedExperiment zinbwave]; }; + bgx = derive2 { name="bgx"; version="1.60.0"; sha256="0z3isnpyf9s11807dprxmd105lb0k4l7r1sygad30ncjvpldifzm"; depends=[affy Biobase gcrma Rcpp]; }; + bigPint = derive2 { name="bigPint"; version="1.10.0"; sha256="0b0l0v9p7a5da3x18d0pqn41ilgxfyzapjaawgsshcfm5mjq5d7q"; depends=[DelayedArray dplyr GGally ggplot2 gridExtra hexbin Hmisc htmlwidgets plotly plyr RColorBrewer reshape shiny shinycssloaders shinydashboard stringr SummarizedExperiment tidyr]; }; + bigmelon = derive2 { name="bigmelon"; version="1.20.0"; sha256="0ksbmybi8wsg515b4k9ij1xqqk9i90pyap2wq5w3c49qgc0pqali"; depends=[Biobase BiocGenerics gdsfmt GEOquery illuminaio methylumi minfi wateRmelon]; }; + bioCancer = derive2 { name="bioCancer"; version="1.22.0"; sha256="1iv7gvixbkfg1igac99ix1a6ah90fc8hsf2062ynazc9nsx9wh3k"; depends=[AlgDesign AnnotationDbi Biobase cgdsr clusterProfiler DiagrammeR DOSE dplyr DT geNetClassifier GO_db htmlwidgets org_Bt_eg_db org_Hs_eg_db plyr r_import radiant_data reactome_db ReactomePA shiny shinythemes tibble visNetwork XML]; }; + bioDist = derive2 { name="bioDist"; version="1.66.0"; sha256="0y35c9sdq5x4q64ip0wgqz59mh01l71k1pp6n8vqbr667nwg0gdp"; depends=[Biobase KernSmooth]; }; + bioassayR = derive2 { name="bioassayR"; version="1.32.0"; sha256="1nfp1alva6qim5rbhg9j9w97p2n4z21ghr4j489lqklkcs4d030f"; depends=[BiocGenerics ChemmineR DBI Matrix rjson RSQLite XML]; }; + biobroom = derive2 { name="biobroom"; version="1.26.0"; sha256="034gbywrscv23kk1qnk7sc7dxdckmf60wh29fz65v1n28mkf180r"; depends=[Biobase broom dplyr tidyr]; }; + biobtreeR = derive2 { name="biobtreeR"; version="1.6.0"; sha256="0m9gx2g5ishbbh7aqp09mpknhr7q1v5ap0s6xp6ccj01pz2gkk8s"; depends=[httpuv httr jsonlite stringi]; }; + biocGraph = derive2 { name="biocGraph"; version="1.56.0"; sha256="0c7r0c1kx22dlwi6d1ldbkkbf53yi0p3vmgbwzrbkn3cina7bcxq"; depends=[BiocGenerics geneplotter graph Rgraphviz]; }; + biocViews = derive2 { name="biocViews"; version="1.62.0"; sha256="094npjhjv3ncd49fzzq1p8rv274r2h1h87la81sy1haf1dbppnh9"; depends=[Biobase BiocManager graph RBGL RCurl RUnit XML]; }; + biocthis = derive2 { name="biocthis"; version="1.4.0"; sha256="0kh5lmv992v4r5r58x29403cll0zxr9fx4ar81nrzvnch5668v39"; depends=[BiocManager fs glue rlang styler usethis]; }; + biodb = derive2 { name="biodb"; version="1.2.0"; sha256="0q343zbx341xdy634p50k7bj6byv8v2rqzy50nw75a79206pajl4"; depends=[BiocFileCache chk jsonlite lgr lifecycle openssl plyr progress R6 rappdirs Rcpp RCurl RSQLite stringr testthat withr XML yaml]; }; + biodbChebi = derive2 { name="biodbChebi"; version="1.0.1"; sha256="1f1bbfk0zp7x07vgnskd0wxb0zv2pvjk22cndw2zn7pgds0g9d9d"; depends=[biodb R6]; }; + biodbHmdb = derive2 { name="biodbHmdb"; version="1.0.0"; sha256="0ngg6gjpcbxs33lq7kwa2a7h88irdvk9z96lfi4gcsgp3rjp782x"; depends=[biodb R6 Rcpp testthat]; }; + biodbKegg = derive2 { name="biodbKegg"; version="1.0.0"; sha256="16xmm3ymzd4jf55plahbxi844hpv0hpqq6v2ygcjf6wrs0yy2mhd"; depends=[biodb chk lifecycle R6]; }; + biodbLipidmaps = derive2 { name="biodbLipidmaps"; version="1.0.1"; sha256="14086f88r7mavpzp823mhpi4b9zq8q2kqxlwnmp02i03jj8mjnr8"; depends=[biodb lifecycle R6]; }; + biodbUniprot = derive2 { name="biodbUniprot"; version="1.0.0"; sha256="1aydkqqb8vs5b844ff1j09a7g8rmf7qr6rg2aw8nqshihq510v4d"; depends=[biodb R6]; }; + biomaRt = derive2 { name="biomaRt"; version="2.50.0"; sha256="069wqihm8pj3r41dizvdbj4jnw9bsc5jrz8czfrak5v69bgk5v5q"; depends=[AnnotationDbi BiocFileCache digest httr progress rappdirs stringr XML xml2]; }; + biomformat = derive2 { name="biomformat"; version="1.22.0"; sha256="0xf99j4lhf8kh9h1317hrbzxdv6rljs1fn68r8s40x6y4db3l817"; depends=[jsonlite Matrix plyr rhdf5]; }; + biomvRCNS = derive2 { name="biomvRCNS"; version="1.34.0"; sha256="01nhjhfyzs67p97bk9bjqdxk239ckl8sgfj55azk1zmw92aw2hfy"; depends=[GenomicRanges Gviz IRanges mvtnorm]; }; + biosigner = derive2 { name="biosigner"; version="1.22.0"; sha256="189018qahyw33dmg73wa7k4rp8nzrx6ai8f2dr6vhbpcdc1gnm0z"; depends=[Biobase e1071 MultiDataSet randomForest ropls]; }; + biotmle = derive2 { name="biotmle"; version="1.18.0"; sha256="0p3iavf9059qa8qvfvqzskfc5gki3z0ivkkqdwg5anvf0wv2k47g"; depends=[assertthat BiocGenerics BiocParallel dplyr drtmle ggplot2 ggsci limma S4Vectors SummarizedExperiment superheat tibble]; }; + biovizBase = derive2 { name="biovizBase"; version="1.42.0"; sha256="0kg71p7sqfvxal0c19zrws1ffaqgyi8p605l3z6mkq5ldi26pajz"; depends=[AnnotationDbi AnnotationFilter BiocGenerics Biostrings dichromat ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Hmisc IRanges RColorBrewer rlang Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; + biscuiteer = derive2 { name="biscuiteer"; version="1.8.0"; sha256="16ds322b21g8ys5c3lkrvi70i82f9rxvnknbiqx4sp6f2l01j5yj"; depends=[Biobase BiocGenerics BiocParallel biscuiteerData bsseq data_table DelayedMatrixStats dmrseq GenomeInfoDb GenomicRanges gtools HDF5Array Homo_sapiens impute Matrix matrixStats Mus_musculus QDNAseq qualV R_utils readr Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; + blacksheepr = derive2 { name="blacksheepr"; version="1.8.0"; sha256="0j623s9vjxknqx3p3d2nbwiqqjp1326bbyvqjm75n1iyj33z1844"; depends=[circlize ComplexHeatmap pasilla RColorBrewer SummarizedExperiment viridis]; }; + blima = derive2 { name="blima"; version="1.28.0"; sha256="0z7xny4v0cypy49a0g38aj0ryh0lzfp9bf0qbzd5kv1yip6n16xq"; depends=[beadarray Biobase BiocGenerics Rcpp]; }; + bluster = derive2 { name="bluster"; version="1.4.0"; sha256="1j24l12i3aga4qd827sj8b160yvrhlznggb4piddkmhjc0sppbjm"; depends=[BiocNeighbors BiocParallel cluster igraph Matrix Rcpp S4Vectors]; }; + bnbc = derive2 { name="bnbc"; version="1.16.0"; sha256="0vvv0pdcmyibl6km1avf3nj25xvpsk5jpw6kg08nqm9jg4h0v57m"; depends=[BiocGenerics data_table EBImage GenomeInfoDb GenomicRanges IRanges matrixStats preprocessCore Rcpp rhdf5 S4Vectors SummarizedExperiment sva]; }; + bnem = derive2 { name="bnem"; version="1.2.0"; sha256="1pv9krjsa2siwbrlp6zlw2403mqdmarxfgc4m77fbz3j0y4gipgp"; depends=[affy binom Biobase CellNOptR cluster epiNEM flexclust graph limma matrixStats mnem RColorBrewer Rgraphviz rmarkdown snowfall sva vsn]; }; + brainflowprobes = derive2 { name="brainflowprobes"; version="1.8.0"; sha256="1y1lkr8klk9l22hmwqq3c9kkiyzy0mjp6fj63cb8zg653ib1sksw"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 bumphunter cowplot derfinder derfinderPlot GenomicRanges GenomicState ggplot2 RColorBrewer]; }; + branchpointer = derive2 { name="branchpointer"; version="1.20.0"; sha256="1rkfn8kdhkxq63n7llh3w7ydxdnzdbz7gd2f4bx7z9alp77lis1d"; depends=[biomaRt Biostrings BSgenome_Hsapiens_UCSC_hg38 caret cowplot data_table gbm GenomeInfoDb GenomicRanges ggplot2 IRanges kernlab plyr rtracklayer S4Vectors stringr]; }; + breakpointR = derive2 { name="breakpointR"; version="1.12.0"; sha256="1c8kypcp5h6krsi1wbprslw7fivamjlcm02hfx5j5ni6skr0cs63"; depends=[BiocGenerics breakpointRdata cowplot doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gtools IRanges Rsamtools S4Vectors]; }; + brendaDb = derive2 { name="brendaDb"; version="1.8.0"; sha256="1yprf5hjzhfhzq71q8vzf45j0dakxbdr9rv166m0zs3nk5f75g3r"; depends=[BiocFileCache BiocParallel crayon curl dplyr magrittr purrr rappdirs Rcpp rlang stringr tibble tidyr xml2]; }; + bridge = derive2 { name="bridge"; version="1.58.0"; sha256="0qzniimw426vivslf0g99c508298cgwykhzrrjhnjc2bfan63iry"; depends=[rama]; }; + bsseq = derive2 { name="bsseq"; version="1.30.0"; sha256="1i30zf6457a0qd64s89x9l544y1h0hj9rfgf1m8l4krd487a9b9d"; depends=[beachmat Biobase BiocGenerics BiocParallel Biostrings BSgenome data_table DelayedArray DelayedMatrixStats GenomeInfoDb GenomicRanges gtools HDF5Array IRanges limma locfit permute R_utils Rcpp rhdf5 S4Vectors scales SummarizedExperiment]; }; + bugsigdbr = derive2 { name="bugsigdbr"; version="1.0.0"; sha256="04msihdxm52nhfy5zrd1wm92p8dss0zy5yb27rrcddflil77rgvc"; depends=[BiocFileCache vroom]; }; + bumphunter = derive2 { name="bumphunter"; version="1.36.0"; sha256="0d5cz9xy7vhcaj5n3h4cfiv08sn7wn83458525pdwvdzzm449xgv"; depends=[AnnotationDbi BiocGenerics doRNG foreach GenomeInfoDb GenomicFeatures GenomicRanges IRanges iterators limma locfit matrixStats S4Vectors]; }; + cBioPortalData = derive2 { name="cBioPortalData"; version="2.6.0"; sha256="0bapc4c9x328l0wrnm6zzq1byf1l33rza8xmadrfqfiq6j56qakq"; depends=[AnVIL BiocFileCache digest dplyr GenomeInfoDb GenomicRanges httr IRanges MultiAssayExperiment RaggedExperiment readr RTCGAToolbox S4Vectors SummarizedExperiment TCGAutils tibble tidyr]; }; + cTRAP = derive2 { name="cTRAP"; version="1.12.0"; sha256="13q0pyc6vvxl41hg8cz4rdqrq0vppnna5fw2cin58dm2mayhd6p9"; depends=[AnnotationDbi AnnotationHub binr cowplot data_table dplyr DT fastmatch fgsea ggplot2 ggrepel highcharter htmltools httr limma pbapply purrr qs R_utils readxl reshape2 rhdf5 rlang scales shiny shinycssloaders tibble]; }; + caOmicsV = derive2 { name="caOmicsV"; version="1.24.0"; sha256="0snr67g9bqwyvrr1gxmgdjhrybgcpl38dwik583752sgdyf84c6p"; depends=[bc3net igraph]; }; + cageminer = derive2 { name="cageminer"; version="1.0.0"; sha256="140w8ccm5j5kl3gyn6437a2zqlzf5277k3g3c9i22n1jkdp947yn"; depends=[BioNERO GenomeInfoDb GenomicRanges ggbio ggplot2 ggtext IRanges reshape2]; }; + calm = derive2 { name="calm"; version="1.8.0"; sha256="1sq78fv4s6ja9yw84k20zl10pbkk8g2kf38p6nbxkhi4rvz8b5r2"; depends=[mgcv]; }; + canceR = derive2 { name="canceR"; version="1.28.0"; sha256="1iii7r1dg4khplqacr1lncks7iqqvgzqfb5vd84bbw2cvc9dbl63"; depends=[Biobase cgdsr circlize Formula geNetClassifier GSEABase phenoTest plyr rpart RUnit survival tcltk2 tkrplot]; }; + cancerclass = derive2 { name="cancerclass"; version="1.38.0"; sha256="1kp764g9jms7r95wh58c4d1yli7xfvhfvi50x2s8rzi4bhi3zik6"; depends=[binom Biobase]; }; + casper = derive2 { name="casper"; version="2.28.0"; sha256="0z85zq5crf3806c16hv0gpv072k2bf7hdyhq958y33282wybr4zd"; depends=[Biobase BiocGenerics coda EBarrays gaga GenomeInfoDb GenomicFeatures GenomicRanges gtools IRanges limma mgcv Rsamtools rtracklayer S4Vectors sqldf survival VGAM]; }; + categoryCompare = derive2 { name="categoryCompare"; version="1.38.0"; sha256="1175is4gr6nr393lk5ha2c3rqsdzsl1mfnhkajcym8n0927rx8n8"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category colorspace GOstats graph GSEABase hwriter RCy3]; }; + cbaf = derive2 { name="cbaf"; version="1.16.0"; sha256="1xdl06arh5kwnp8159kbcrhlc19zlwk1srzk634jzp8pch9086da"; depends=[BiocFileCache cgdsr genefilter gplots openxlsx RColorBrewer]; }; + cbpManager = derive2 { name="cbpManager"; version="1.2.0"; sha256="12jw5pw10dhkmbljphrzc9g2jn5fd6wz5vn0ixmvndyq09yl9aw3"; depends=[basilisk dplyr DT htmltools jsonlite magrittr markdown plyr rapportools reticulate rintrojs shiny shinyBS shinycssloaders shinydashboard vroom]; }; + ccfindR = derive2 { name="ccfindR"; version="1.14.0"; sha256="00xaspkckhnflkaj0wfs06kbz6y6cfshr1mq4zhh7yszppgqflzd"; depends=[ape gtools irlba Matrix RColorBrewer Rcpp RcppEigen Rdpack Rmpi Rtsne S4Vectors SingleCellExperiment SummarizedExperiment]; }; + ccmap = derive2 { name="ccmap"; version="1.20.0"; sha256="1z5lyv7m55wcncjlrqzflmp1jm2580k1pvajj3gjqif8kx477q3d"; depends=[AnnotationDbi BiocManager ccdata data_table doParallel foreach lsa xgboost]; }; + ccrepe = derive2 { name="ccrepe"; version="1.30.0"; sha256="05wazs9bv4nlkzb3r98v31w0vpkv4071f9zw9dlh9jd8cm91ppk1"; depends=[infotheo]; }; + ceRNAnetsim = derive2 { name="ceRNAnetsim"; version="1.6.0"; sha256="126wkhzj2f5b691jc34a6cqn2rznv531gg1cqfqs4j7k47hfy0in"; depends=[dplyr furrr future ggplot2 ggraph igraph purrr rlang tibble tidygraph tidyr]; }; + celaref = derive2 { name="celaref"; version="1.12.0"; sha256="0rxcy7sw1l2r8j1sralvqwl7ml2hf6x74qmfam87s6gal021z6qj"; depends=[BiocGenerics DelayedArray dplyr ggplot2 magrittr MAST Matrix readr rlang S4Vectors SummarizedExperiment tibble]; }; + celda = derive2 { name="celda"; version="1.10.0"; sha256="1qlkkh1h6pjv6rjk5p50iq1dhzn1l6sqnm61y6jlg1hqkdc76wbb"; depends=[circlize ComplexHeatmap data_table dbscan DelayedArray digest doParallel enrichR foreach ggplot2 ggrepel gtable Matrix matrixStats MCMCprecision multipanelfigure plyr RColorBrewer Rcpp RcppEigen reshape2 Rtsne S4Vectors scales scater scran SingleCellExperiment stringr SummarizedExperiment uwot withr]; }; + cellHTS2 = derive2 { name="cellHTS2"; version="2.58.0"; sha256="0h5vif8xi7axfh41mmp0b8zm1r07mnlnqq6bp0fkwqyas7gbzahh"; depends=[Biobase BiocGenerics Category genefilter GSEABase hwriter locfit RColorBrewer splots vsn]; }; + cellTree = derive2 { name="cellTree"; version="1.24.0"; sha256="1jdspwhimzj2bdjip6jbmqdyxsj8grr7nd6h31b3abs3sk19khy8"; depends=[gplots igraph maptpx slam topGO topicmodels xtable]; }; + cellbaseR = derive2 { name="cellbaseR"; version="1.18.0"; sha256="1hsm3yd8zjzym2xh6isikvm5nx3jvfsbq6m34x3i3ash8hgg9022"; depends=[BiocParallel data_table doParallel foreach httr jsonlite pbapply R_utils Rsamtools tidyr]; }; + cellity = derive2 { name="cellity"; version="1.22.0"; sha256="18nivw8c2iv6ibp6hj2m0f04qb28dcq3ya1imfwsvanm9qb2z8zr"; depends=[AnnotationDbi e1071 ggplot2 mvoutlier org_Hs_eg_db org_Mm_eg_db robustbase topGO]; }; + cellmigRation = derive2 { name="cellmigRation"; version="1.2.0"; sha256="0wwfp4jffdxjhzpjpa9136i7ji7bkgbmkdrc4k058kwncv65iajp"; depends=[doParallel FactoMineR FME foreach Hmisc matrixStats reshape2 sp SpatialTools tiff vioplot]; }; + cellscape = derive2 { name="cellscape"; version="1.18.0"; sha256="1p8ib244yxfzl5xswl1ifhj7grc8435npw82kmj5vqg8mqbkhgh7"; depends=[dplyr gtools htmlwidgets jsonlite plyr reshape2 stringr]; }; + censcyt = derive2 { name="censcyt"; version="1.2.0"; sha256="0yrkv3122iniqgfsp8hhglndpklhlvr2d1f661ghn73dhwbabmww"; depends=[BiocParallel broom_mixed diffcyt dirmult dplyr edgeR fitdistrplus lme4 magrittr MASS mice multcomp purrr rlang S4Vectors stringr SummarizedExperiment survival tibble tidyr]; }; + cfDNAPro = derive2 { name="cfDNAPro"; version="1.0.0"; sha256="0klzwax2wblcq8j51ig7qkxml7yb3qc2p66g2ds8sfai0y3hslf9"; depends=[dplyr ggplot2 magrittr quantmod rlang Rsamtools stringr]; }; + cghMCR = derive2 { name="cghMCR"; version="1.52.0"; sha256="1j3pdj1c5wpl0mmirbssysval6fh2vyfb4d6w6jkqikchbcal8pk"; depends=[BiocGenerics CNTools DNAcopy limma]; }; + chimeraviz = derive2 { name="chimeraviz"; version="1.20.0"; sha256="0gsd2bwjzh6f8gqclnhm8gq2q3c1ddp4qqflmbgfk16jja8516va"; depends=[AnnotationDbi AnnotationFilter BiocStyle Biostrings checkmate data_table dplyr DT ensembldb GenomeInfoDb GenomicAlignments GenomicRanges graph gtools Gviz IRanges magick org_Hs_eg_db org_Mm_eg_db plyr RCircos RColorBrewer Rgraphviz rmarkdown Rsamtools S4Vectors]; }; + chipenrich = derive2 { name="chipenrich"; version="2.18.0"; sha256="1nyb79hw5k15vs2vxcfc13ypvqz01khsva56yalcnkb8y2am4gyn"; depends=[AnnotationDbi BiocGenerics chipenrich_data GenomeInfoDb GenomicRanges IRanges lattice latticeExtra MASS mgcv org_Dm_eg_db org_Dr_eg_db org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db plyr rms rtracklayer S4Vectors stringr]; }; + chipseq = derive2 { name="chipseq"; version="1.44.0"; sha256="1jw209bfh1c22mqs9z44qx3pmca9m68rhxp0p9bvbmqsnqwrndi6"; depends=[BiocGenerics GenomicRanges IRanges lattice S4Vectors ShortRead]; }; + chopsticks = derive2 { name="chopsticks"; version="1.60.0"; sha256="08v9kkqx3ylhcrj00s909v8ij0mskphd7pi1m7kixs90bisvhhw7"; depends=[survival]; }; + chromDraw = derive2 { name="chromDraw"; version="2.24.0"; sha256="11vvk3m2av7dffwlbg74xlk5f50r1b6fijv820875b7sxhfhxy7x"; depends=[GenomicRanges Rcpp]; }; + chromPlot = derive2 { name="chromPlot"; version="1.22.0"; sha256="190h1906007wm14y0ra1nnanacig0yrhcpmnpbanzl68gmjhvalh"; depends=[biomaRt GenomicRanges]; }; + chromVAR = derive2 { name="chromVAR"; version="1.16.0"; sha256="0ylsfr540l763bh010irbcavlskahyb1769pppimdgn22gyr3spk"; depends=[BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicRanges ggplot2 IRanges Matrix miniUI nabor plotly RColorBrewer Rcpp RcppArmadillo Rsamtools Rtsne S4Vectors shiny SummarizedExperiment TFBSTools]; }; + chromstaR = derive2 { name="chromstaR"; version="1.19.0"; sha256="0z511l26fhz00qn8h2yybylk8c3ws8hj1hp8hq9qj9mfczwiqy3j"; depends=[bamsignals BiocGenerics chromstaRData doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges mvtnorm reshape2 Rsamtools S4Vectors]; }; + chromswitch = derive2 { name="chromswitch"; version="1.16.0"; sha256="0mb26jhrkd99akrfsnx5ziszmwv3ydc6sp140s1wh6jwn6qjws73"; depends=[Biobase BiocParallel cluster dplyr GenomicRanges gplots IRanges lazyeval magrittr matrixStats NMF rtracklayer S4Vectors tidyr]; }; + cicero = derive2 { name="cicero"; version="1.12.0"; sha256="1fc69nkm2cwpr6gkfmra2ph0lrmw486chswp4pn8i70ia43fzdm7"; depends=[assertthat Biobase BiocGenerics data_table dplyr FNN GenomicRanges ggplot2 glasso Gviz igraph IRanges Matrix monocle plyr reshape2 S4Vectors stringi stringr tibble tidyr VGAM]; }; + circRNAprofiler = derive2 { name="circRNAprofiler"; version="1.8.0"; sha256="0l83r9idhrha1m21vpnw917m5dlldji49zvx4d25m5g3ia1pkhpf"; depends=[AnnotationHub Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 DESeq2 dplyr edgeR GenomeInfoDb GenomicRanges ggplot2 gwascat IRanges magrittr R_utils readr reshape2 rlang rtracklayer S4Vectors seqinr stringi stringr universalmotif]; }; + cisPath = derive2 { name="cisPath"; version="1.34.0"; sha256="1gr3p89zb454rkvjikfpsqrhiyn7lymfni6m8jwwlv3yxfk80n2z"; depends=[]; }; + cleanUpdTSeq = derive2 { name="cleanUpdTSeq"; version="1.32.0"; sha256="0rcfnqdcvw5na1x27iyp8zkzv3x219j8j8k13kkchv1z43q0a9zp"; depends=[Biostrings BSgenome BSgenome_Drerio_UCSC_danRer7 e1071 GenomeInfoDb GenomicRanges IRanges seqinr stringr]; }; + cleaver = derive2 { name="cleaver"; version="1.32.0"; sha256="0r2n787qws638h3cclhl1idfvqm64640s9xi6g85269hzx4cfgf0"; depends=[Biostrings IRanges S4Vectors]; }; + cliProfiler = derive2 { name="cliProfiler"; version="1.0.0"; sha256="1hkq0dyd2d9v3f0567n3jy66xaj0gzg0ig2hdj8g5dbbxbspbr3r"; depends=[Biostrings BSgenome dplyr GenomicRanges ggplot2 rtracklayer S4Vectors]; }; + clippda = derive2 { name="clippda"; version="1.44.0"; sha256="1c0hjj1lcnyrwwvkb2s0g3dm2sgfr35sbxkfiqhnylrqq9akpi2y"; depends=[Biobase lattice limma rgl scatterplot3d statmod]; }; + clipper = derive2 { name="clipper"; version="1.34.0"; sha256="0110jdpc24fnj2wb3zmvihsfkyk9d0lv3bm7bcf3nlyj3h7ibkwn"; depends=[Biobase corpcor graph gRbase igraph KEGGgraph Matrix qpgraph RBGL Rcpp]; }; + cliqueMS = derive2 { name="cliqueMS"; version="1.8.0"; sha256="1r5appv1k73pngsawfah25wvj8xkyrzr63f7iq7hzdin6d7yxp54"; depends=[BH igraph matrixStats MSnbase qlcMatrix Rcpp RcppArmadillo xcms]; }; + clonotypeR = derive2 { name="clonotypeR"; version="1.32.1"; sha256="1fxhv3g7hz4yihrwcr0gb8z2n48al5jx9ilb82rwy67f82g5f3af"; depends=[]; }; + clst = derive2 { name="clst"; version="1.42.0"; sha256="1da3mw445bv9mr59wpnjw2zk0avrbrwannrc5jmwxd4sdiy33f2r"; depends=[lattice ROC]; }; + clstutils = derive2 { name="clstutils"; version="1.42.0"; sha256="0zbyppajhkzims3cb631ylfl132a07b1w91kp3ba6hg4f7zxw06q"; depends=[ape clst lattice rjson RSQLite]; }; + clustComp = derive2 { name="clustComp"; version="1.22.0"; sha256="0n1qpjxffx8jm8m3gw891irpzagpi91r46xa6iznsskh8nhmh44y"; depends=[sm]; }; + clusterExperiment = derive2 { name="clusterExperiment"; version="2.14.0"; sha256="0riray1f841d5fx6mbcki5xmqz21kg5q5l0qz4pkgg9c1d9f7mbc"; depends=[ape BiocGenerics BiocSingular cluster DelayedArray edgeR HDF5Array howmany kernlab limma locfdr Matrix matrixStats mbkmeans NMF phylobase pracma RColorBrewer Rcpp S4Vectors scales SingleCellExperiment stringr SummarizedExperiment zinbwave]; }; + clusterProfiler = derive2 { name="clusterProfiler"; version="4.2.0"; sha256="18y7482sw0awlhazikq13r2r0zid9ksk942rma87m448y1cq2fi5"; depends=[AnnotationDbi DOSE downloader dplyr enrichplot GO_db GOSemSim magrittr plyr qvalue rlang tidyr yulab_utils]; }; + clusterSeq = derive2 { name="clusterSeq"; version="1.18.0"; sha256="1qyycc8wrik54bc2rvzisv6p05jnh1kf68jafqgw9lqpp5gk40bl"; depends=[baySeq BiocGenerics BiocParallel]; }; + clusterStab = derive2 { name="clusterStab"; version="1.66.0"; sha256="1863jpdwx27snpil38waj3zr0w2m0q7xj8g1zm8c5cbx9as1cwkd"; depends=[Biobase]; }; + clustifyr = derive2 { name="clustifyr"; version="1.5.1"; sha256="0qrbfb04lfj72f7nv001p92a6q8j9ymh24b3c4gfg8pm4dw7m344"; depends=[cowplot dplyr entropy fgsea ggplot2 httr Matrix matrixStats proxy readr rlang S4Vectors scales SingleCellExperiment stringr SummarizedExperiment tibble tidyr]; }; + cmapR = derive2 { name="cmapR"; version="1.6.0"; sha256="0zk96k6z80zkd4q6s4fcn21vmz6y17bfa1sqllvyn3zy237gj132"; depends=[data_table flowCore matrixStats rhdf5 SummarizedExperiment]; }; + cn_farms = derive2 { name="cn.farms"; version="1.42.0"; sha256="062rp52r1wv5wiqjvp0rsjfzqyjgh4v73iir77ivmmimsydv38lm"; depends=[affxparser Biobase DBI DNAcopy ff lattice oligo oligoClasses preprocessCore snow]; }; + cn_mops = derive2 { name="cn.mops"; version="1.40.0"; sha256="1ibmm87x0wi93ss1p2vmaxwa1xncqx63q42zf7fppmmdgfn4rcvg"; depends=[Biobase BiocGenerics exomeCopy GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; }; + cnvGSA = derive2 { name="cnvGSA"; version="1.38.0"; sha256="0gnpdbnj3wi9jbi0bkz0kiynl9dc0p1vg26xv8xq3cqpb3ppjnqd"; depends=[brglm doParallel foreach GenomicRanges splitstackshape]; }; + coGPS = derive2 { name="coGPS"; version="1.38.0"; sha256="0qjsz8n791x10w1a6p68cdp3ch4c1v45b8pfvx774jjh52i9v6qp"; depends=[]; }; + coMET = derive2 { name="coMET"; version="1.26.0"; sha256="0n4fhhx27qrqs855qjx6ng7xdgcxlv3krj5sy4sxrhsahslad9v4"; depends=[biomaRt colortools corrplot GenomicRanges gridExtra Gviz hash IRanges psych rtracklayer S4Vectors]; }; + coRdon = derive2 { name="coRdon"; version="1.12.0"; sha256="1m5k0cp61x50izgpb748h8dh2ab98i3vlsf63lhcvhvirind96fw"; depends=[Biobase Biostrings data_table dplyr ggplot2 purrr stringr]; }; + codelink = derive2 { name="codelink"; version="1.62.0"; sha256="13ydy59qk5walsifyl8gfd181wbkf1jam3242407fsskw5ia4kfv"; depends=[annotate Biobase BiocGenerics limma]; }; + coexnet = derive2 { name="coexnet"; version="1.15.0"; sha256="1h3l7rjk757qbddyg0p8l21h8z3i4n3ml295lmavszsm9knyc2fk"; depends=[acde affy Biobase GEOquery igraph limma minet rmarkdown siggenes STRINGdb SummarizedExperiment vsn]; }; + cogena = derive2 { name="cogena"; version="1.28.0"; sha256="077cmcsqvc2d26ywm6537l538pnn9473sh3q0z91zvmw0886iava"; depends=[amap apcluster Biobase biwt class cluster corrplot devtools doParallel dplyr fastcluster foreach ggplot2 gplots kohonen mclust reshape2 stringr tibble tidyr]; }; + cola = derive2 { name="cola"; version="2.0.0"; sha256="13ibslqhqa0xgg79n3cbgpmzlhf9nhibn4wm4mdcyxarxlqlqrsh"; depends=[BiocGenerics brew circlize clue cluster ComplexHeatmap crayon digest doParallel eulerr foreach GetoptLong GlobalOptions httr impute irlba knitr markdown matrixStats mclust microbenchmark png RColorBrewer Rcpp skmeans xml2]; }; + combi = derive2 { name="combi"; version="1.6.0"; sha256="0wca0wjmyr0jfy366b2xqfk56qd1y2s43ccbnhbzmvaj7hafnnbc"; depends=[alabama BB Biobase cobs ggplot2 limma Matrix nleqslv phyloseq reshape2 SummarizedExperiment tensor vegan]; }; + compEpiTools = derive2 { name="compEpiTools"; version="1.27.0"; sha256="0hk3yd7ql91wg9r24r57ybhs1nx6zbd5v199sv7xd91k980n2ay5"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges GO_db gplots IRanges methylPipe Rsamtools S4Vectors topGO XVector]; }; + compartmap = derive2 { name="compartmap"; version="1.12.0"; sha256="0dhkrskw1hb2vxq3dkxl6ccf0mxpydszpd7d6lpqrk2x62i7hhk5"; depends=[BiocSingular DelayedArray DelayedMatrixStats GenomicRanges ggplot2 HDF5Array Matrix RaggedExperiment reshape2 RMTstat rtracklayer scales SummarizedExperiment]; }; + compcodeR = derive2 { name="compcodeR"; version="1.30.0"; sha256="0793wkv967w5sicg4spx1mw48pgn18rwb7wkcqc98sc7d0fvi1vb"; depends=[caTools edgeR ggplot2 gplots gtools KernSmooth knitr lattice limma markdown MASS modeest ROCR sm stringr vioplot]; }; + conclus = derive2 { name="conclus"; version="1.2.0"; sha256="1c4n4ybm0ppd83ydhxghs5kv93djqxin0ppkg4n6rbjw7m9qx1p2"; depends=[AnnotationDbi Biobase BiocFileCache biomaRt clusterProfiler dbscan doParallel dplyr factoextra foreach fpc GEOquery ggplot2 gridExtra pheatmap Rtsne scales scater scran SingleCellExperiment stringr SummarizedExperiment]; }; + condiments = derive2 { name="condiments"; version="1.2.0"; sha256="00328ql84ry1fnfdmjn46f5q4ifbr8bbgrmvbdg6mvcmy27sqgab"; depends=[BiocParallel dplyr Ecume igraph magrittr matrixStats mgcv pbapply RANN SingleCellExperiment slingshot SummarizedExperiment TrajectoryUtils]; }; + consensus = derive2 { name="consensus"; version="1.12.0"; sha256="1jxmxvw5wak9arj5b986k44h7xx1wiwdqn0lvkik47yzim53bclc"; depends=[gplots matrixStats RColorBrewer]; }; + consensusDE = derive2 { name="consensusDE"; version="1.12.0"; sha256="032qb4ni2q4k2ja8bjgqdgccrcccnjsl0lfiykizzbpma52k3knw"; depends=[airway AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings data_table dendextend DESeq2 EDASeq edgeR EnsDb_Hsapiens_v86 ensembldb GenomicAlignments GenomicFeatures limma org_Hs_eg_db pcaMethods RColorBrewer Rsamtools RUVSeq S4Vectors SummarizedExperiment TxDb_Dmelanogaster_UCSC_dm3_ensGene]; }; + consensusOV = derive2 { name="consensusOV"; version="1.16.0"; sha256="0rgk2674pbwxiqhj75yl283inr7bdhi9ndy48nm4553x6gv8bv20"; depends=[Biobase gdata genefu GSVA limma matrixStats randomForest]; }; + consensusSeekeR = derive2 { name="consensusSeekeR"; version="1.22.0"; sha256="1ckq96jw2g7zc2xwpi83qdik0d63qf8jrn24cx6pmm5zpnrcpv2i"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges IRanges rtracklayer S4Vectors stringr]; }; + contiBAIT = derive2 { name="contiBAIT"; version="1.22.0"; sha256="19pbn2yr0fry9z8n153xjnz9d5m82mvyad67ys6zn566474ygjfa"; depends=[BH BiocGenerics BiocParallel clue cluster colorspace data_table diagram DNAcopy exomeCopy GenomicAlignments GenomicFiles GenomicRanges ggplot2 gplots gtools IRanges Rcpp reshape2 Rsamtools rtracklayer S4Vectors TSP]; }; + conumee = derive2 { name="conumee"; version="1.28.0"; sha256="0f7lji7880kqw4y24w7nwz3cd6pky3pk37mkwy8frb44zlyqzf2j"; depends=[DNAcopy GenomeInfoDb GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest IRanges minfi rtracklayer]; }; + convert = derive2 { name="convert"; version="1.70.0"; sha256="0ylqsj754ykr72xwc27gary3wxvrnl9ahflcnrnsg59fzlpr5i5w"; depends=[Biobase limma marray]; }; + copa = derive2 { name="copa"; version="1.62.0"; sha256="062ljzp597xr0lh8wniq0h6hzim0741slf6xg196agcjn2q3bs7d"; depends=[Biobase]; }; + copynumber = derive2 { name="copynumber"; version="1.34.0"; sha256="143ifvjkjz0392drm82xmpj1f8b5pc2dyyxyc9dkqmay8lf1n534"; depends=[BiocGenerics GenomicRanges IRanges S4Vectors]; }; + corral = derive2 { name="corral"; version="1.4.0"; sha256="1mmiwqjqgm53x0ginv3gqxz0wf08yv70p9m0flarx9n6k3ri3bwb"; depends=[ggplot2 ggthemes gridExtra irlba Matrix MultiAssayExperiment pals SingleCellExperiment SummarizedExperiment transport]; }; + coseq = derive2 { name="coseq"; version="1.18.0"; sha256="0g3bningjbnjys7ksdxx68lnp7qfg2fwpp2m82s61rpyb06j5v4r"; depends=[BiocParallel capushe compositions corrplot DESeq2 e1071 edgeR ggplot2 HTSCluster HTSFilter mvtnorm Rmixmod S4Vectors scales SummarizedExperiment]; }; + cosmiq = derive2 { name="cosmiq"; version="1.28.0"; sha256="0b0d7d7fdf0rgkrpp92n6k1vkxswm63p1qmqb3b2c0nwpj68ybph"; depends=[faahKO MassSpecWavelet pracma Rcpp xcms]; }; + cosmosR = derive2 { name="cosmosR"; version="1.2.0"; sha256="0y1a3yr23zbyg0b7yl7rbbfn930g72fpw8dz6vcfz73yjj6psxv1"; depends=[AnnotationDbi biomaRt CARNIVAL dorothea dplyr ggplot2 GSEABase igraph magrittr org_Hs_eg_db plyr purrr readr rlang scales stringr tibble visNetwork]; }; + countsimQC = derive2 { name="countsimQC"; version="1.12.0"; sha256="0ldjav5wsj1shjiyxi0mh3yxhmpwgwfvp9ijml6jii60hnbkrqck"; depends=[caTools DESeq2 dplyr DT edgeR genefilter GenomeInfoDbData ggplot2 randtests rmarkdown SummarizedExperiment tidyr]; }; + covEB = derive2 { name="covEB"; version="1.20.0"; sha256="0r0b1hih0wijcpn2xxjq56z185a5ij3l49g6wxbp5kcd7w5apmhp"; depends=[Biobase gsl igraph LaplacesDemon Matrix mvtnorm]; }; + covRNA = derive2 { name="covRNA"; version="1.20.0"; sha256="16d5pdq2zhymxpv1xx66bb8kn037559mbp3lrcmhddy46xb519cv"; depends=[ade4 Biobase genefilter]; }; + cpvSNP = derive2 { name="cpvSNP"; version="1.26.0"; sha256="1z3lzj2izqmy1m8y73za4pfk158rfxbs8janvq776aqzcaa5pf0k"; depends=[BiocParallel corpcor GenomicFeatures ggplot2 GSEABase plyr]; }; + cqn = derive2 { name="cqn"; version="1.40.0"; sha256="0bipwwscnifnwkgqayjg2pc2c50vykrfnyxxgxjbadlpaqar324a"; depends=[mclust nor1mix preprocessCore quantreg]; }; + crisprseekplus = derive2 { name="crisprseekplus"; version="1.20.0"; sha256="0bmx17mwl7w5fchgszbm5vh9ivnq5c6jvaz21srfnpxfcw5mpfji"; depends=[AnnotationDbi BiocManager BSgenome CRISPRseek DT GenomicFeatures GenomicRanges GUIDEseq hash shiny shinyjs]; }; + crlmm = derive2 { name="crlmm"; version="1.52.0"; sha256="1nrfr4kkfh7fab8v6w70dxdlxhfpkrfxz6px95wmrjlqpkp6acdb"; depends=[affyio beanplot Biobase BiocGenerics ellipse ff foreach illuminaio lattice limma matrixStats mvtnorm oligoClasses preprocessCore RcppEigen VGAM]; }; + crossmeta = derive2 { name="crossmeta"; version="1.20.0"; sha256="1xfxjis5rl4mzlyzqsw9wjn75gd33i1f9658vy7vzs0grkjhx2m4"; depends=[affxparser affy AnnotationDbi Biobase BiocGenerics BiocManager data_table DBI DESeq2 DT edgeR fdrtool GEOquery limma matrixStats metaMA miniUI oligo RColorBrewer RCurl reader readxl RSQLite shiny shinyBS shinyjs shinypanel shinyWidgets statmod stringr SummarizedExperiment sva tibble XML]; }; + csaw = derive2 { name="csaw"; version="1.28.0"; sha256="0vwrwkwc30gb5x17sl1vkphf0qn6ib6387q9r3axqcyj1swf2wzq"; depends=[BiocGenerics BiocParallel edgeR GenomeInfoDb GenomicRanges IRanges limma Matrix metapod Rcpp Rhtslib Rsamtools S4Vectors SummarizedExperiment zlibbioc]; }; + csdR = derive2 { name="csdR"; version="1.0.0"; sha256="1qgzpg14acag2rnr5606672lzxfipi5xqr3jcjl9bhmsq4g1mcqh"; depends=[glue matrixStats Rcpp RhpcBLASctl WGCNA]; }; + ctc = derive2 { name="ctc"; version="1.68.0"; sha256="1yq5igwzcwfhxy49qf3pralpikiqq7sqr1cig8mkpjpaj5bbaayx"; depends=[amap]; }; + ctgGEM = derive2 { name="ctgGEM"; version="1.6.0"; sha256="03ba8vqxlxf8j1ifiz4ak3fjdjq1y11zw561j7knp37l8r8zy852"; depends=[Biobase BiocGenerics igraph Matrix monocle sincell SummarizedExperiment TSCAN]; }; + ctsGE = derive2 { name="ctsGE"; version="1.20.0"; sha256="1hyy1mc72qmkv3gc80jrz3crj0yc2cig5bl91vhbxgn2a0wrxs3a"; depends=[ccaPP ggplot2 limma reshape2 shiny stringr]; }; + cummeRbund = derive2 { name="cummeRbund"; version="2.36.0"; sha256="0130hrlz2jabbshis1g11ndda8b8vlirzi7a004li3cgdghscxql"; depends=[Biobase BiocGenerics fastcluster ggplot2 Gviz plyr reshape2 RSQLite rtracklayer S4Vectors]; }; + customCMPdb = derive2 { name="customCMPdb"; version="1.4.0"; sha256="0g8q63byqydppbcmbkm9n9pbl55k3mkfzdcipvypnyxz2fl2r0aj"; depends=[AnnotationHub BiocFileCache ChemmineR rappdirs RSQLite XML]; }; + customProDB = derive2 { name="customProDB"; version="1.34.0"; sha256="08q6cmxkqlhk1v8xmya4afnhsxgki8qk15xwmsa465kdgz0pcr5c"; depends=[AhoCorasickTrie AnnotationDbi biomaRt Biostrings DBI GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges plyr RCurl Rsamtools RSQLite rtracklayer S4Vectors stringr VariantAnnotation]; }; + cyanoFilter = derive2 { name="cyanoFilter"; version="1.2.0"; sha256="011xx93clmz9g9mb9grm3g6kplx5lf11aww0a9k6z970gx528hd0"; depends=[Biobase cytometree flowClust flowCore flowDensity GGally ggplot2 mrfDepth]; }; + cycle = derive2 { name="cycle"; version="1.48.0"; sha256="1zcxvf41ick80pi929vabbs632dml2rcxwjzz5z5pvz9ppm70vab"; depends=[Biobase Mfuzz]; }; + cydar = derive2 { name="cydar"; version="1.18.0"; sha256="0wsfcwfsm7lf6q13cgcwg189zjabdxnlaqbdb6gh1pk27mh3s70g"; depends=[Biobase BiocGenerics BiocNeighbors BiocParallel flowCore Rcpp S4Vectors shiny SingleCellExperiment SummarizedExperiment viridis]; }; + cytoKernel = derive2 { name="cytoKernel"; version="1.0.0"; sha256="1n48bz8ainax53m6d5i5zyjlja3v5nv9vhx45r5746sr9rppbljw"; depends=[ashr BiocParallel circlize ComplexHeatmap data_table dplyr magrittr Rcpp rlang S4Vectors SummarizedExperiment]; }; + cytolib = derive2 { name="cytolib"; version="2.6.0"; sha256="01r5dfjil1i526kb5gj9c8x9agi90x0bh7lzykbpn0g6s2hznbzi"; depends=[BH Rcpp RcppArmadillo RcppParallel Rhdf5lib RProtoBufLib]; }; + cytomapper = derive2 { name="cytomapper"; version="1.6.0"; sha256="0vmklch5g82pbhpax2flizglyndhs1dmdq015wclj0a9wyflzn6d"; depends=[BiocParallel DelayedArray EBImage ggbeeswarm ggplot2 HDF5Array matrixStats raster RColorBrewer rhdf5 S4Vectors shiny shinydashboard SingleCellExperiment SummarizedExperiment svglite svgPanZoom viridis]; }; + dStruct = derive2 { name="dStruct"; version="1.0.0"; sha256="0sy05n0zgd9d8jm352drw7xbcd37ghxzq7fwc3icm8hgqfx43qyk"; depends=[ggplot2 IRanges purrr reshape2 rlang S4Vectors zoo]; }; + daMA = derive2 { name="daMA"; version="1.66.0"; sha256="0m7192md5956mbklw0j7z0b82inr6h0p2c9vvjsmd5ivlbz1zdri"; depends=[MASS]; }; + dada2 = derive2 { name="dada2"; version="1.22.0"; sha256="1mj2fiqanr8lp1883bali00la38d9g1krqz9v7f396s1f5x8yll6"; depends=[BiocGenerics Biostrings ggplot2 IRanges Rcpp RcppParallel reshape2 ShortRead XVector]; }; + dagLogo = derive2 { name="dagLogo"; version="1.32.0"; sha256="1gqb56zg11cl7ldww15zmn09f1f5i60mshwrv7gsb3yc79zs48s1"; depends=[BiocGenerics biomaRt Biostrings motifStack pheatmap UniProt_ws]; }; + dasper = derive2 { name="dasper"; version="1.4.0"; sha256="02gfagylbmpylq0cszppyxindiw3swm5n36cnfc9w08jfyisz571"; depends=[basilisk BiocFileCache BiocParallel data_table dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggpubr ggrepel IRanges magrittr megadepth plyranges readr reticulate rtracklayer S4Vectors stringr SummarizedExperiment tidyr]; }; + dcGSA = derive2 { name="dcGSA"; version="1.22.0"; sha256="0j697q02zys9brmc7xn1yh7lir7k1m7hlr752ykydqx9qzzw0m77"; depends=[BiocParallel Matrix]; }; + dcanr = derive2 { name="dcanr"; version="1.10.0"; sha256="0xrfdwcs4qxgasm318nd2cdqmr9ksaxig1frs8h6a7lg8wvh5f2x"; depends=[circlize doRNG foreach igraph Matrix plyr RColorBrewer reshape2 stringr]; }; + dce = derive2 { name="dce"; version="1.2.0"; sha256="0wzi9hv975ib7nvd6qqnlhzfzgx9wydxxs1pkklzzgwlwm4gr971"; depends=[assertthat CombinePValue dplyr edgeR epiNEM expm ggplot2 ggraph glm2 glue graph graphite harmonicmeanp igraph logger MASS Matrix metap mnem naturalsort org_Hs_eg_db pcalg ppcor purrr reshape2 Rgraphviz rlang tidygraph tidyverse]; }; + ddCt = derive2 { name="ddCt"; version="1.50.0"; sha256="1qzgahnn9q4dmixhhaal1jv5p5jb5vm0hark1npvv3ya2jqpndp4"; depends=[Biobase BiocGenerics lattice RColorBrewer xtable]; }; + ddPCRclust = derive2 { name="ddPCRclust"; version="1.14.0"; sha256="13s2h8bfd6i6shbm9iwlz99nvyif6c934ccgkdihgbxfq2zacmdj"; depends=[clue flowCore flowDensity flowPeaks ggplot2 openxlsx plotrix R_utils SamSPECTRAL]; }; + dearseq = derive2 { name="dearseq"; version="1.6.0"; sha256="07vr27rv3z86ajd62c0ilvfgz9z35qsiwwi5pv4sygbhnnjwh3rc"; depends=[ggplot2 KernSmooth matrixStats patchwork pbapply statmod survey viridisLite]; }; + debCAM = derive2 { name="debCAM"; version="1.12.0"; sha256="1nqc2r9wr4q71zsya0ylwkxc91sqa4zkal26wiv5h10bk5nxig5r"; depends=[apcluster Biobase BiocParallel corpcor DMwR2 geometry NMF nnls pcaPP rJava SummarizedExperiment]; }; + debrowser = derive2 { name="debrowser"; version="1.22.0"; sha256="0d0sy72hyl2jbkfn4fh18yp51hh6qz30yk7iacz69y59c5rcqn8s"; depends=[annotate AnnotationDbi apeglm ashr clusterProfiler colourpicker DESeq2 DOSE DT edgeR enrichplot GenomicRanges ggplot2 gplots Harman heatmaply igraph IRanges jsonlite limma org_Hs_eg_db org_Mm_eg_db pathview plotly RColorBrewer RCurl reshape2 S4Vectors shiny shinyBS shinydashboard shinyjs stringi SummarizedExperiment sva]; }; + deco = derive2 { name="deco"; version="1.10.0"; sha256="1bvn5wipvyxy5h74wl1433pv5lzdp82m8yxwr3b8cljnlqcqh9da"; depends=[ade4 AnnotationDbi Biobase BiocParallel BiocStyle cluster foreign gdata ggplot2 gplots gridExtra limma locfit made4 RColorBrewer reshape2 scatterplot3d sfsmisc SummarizedExperiment]; }; + decompTumor2Sig = derive2 { name="decompTumor2Sig"; version="2.10.0"; sha256="125913q735vazmlnvg8vdca8j88y0mx24zdlqzsgzw9ylkwbq86p"; depends=[BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg19 data_table GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggseqlogo gridExtra Matrix plyr quadprog readxl S4Vectors SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; + decontam = derive2 { name="decontam"; version="1.14.0"; sha256="0k8rp91ap3dwzhhhg3s7ikbphxvgha7m118ayrghshp8929g3cdm"; depends=[ggplot2 reshape2]; }; + deconvR = derive2 { name="deconvR"; version="1.0.1"; sha256="1ibp59d0q8bax7rphg140jb5ylkhmaa4lmc0khqffq440j9fnrr5"; depends=[assertthat BiocGenerics data_table dplyr e1071 foreach GenomicRanges IRanges magrittr MASS matrixStats methylKit nnls quadprog rsq S4Vectors tidyr]; }; + decoupleR = derive2 { name="decoupleR"; version="2.0.0"; sha256="0a9jxhfa2qfafvc35vqky8dfqhpl5vw6zmm1q5gq26bc58pswqar"; depends=[AUCell broom dplyr fgsea GSVA magrittr Matrix purrr ranger rlang RobustRankAggreg rpart speedglm stringr SummarizedExperiment tibble tidyr tidyselect viper withr]; }; + deepSNV = derive2 { name="deepSNV"; version="1.40.0"; sha256="1wi6j6yb6i9fs9yszfywqz3w50mhl85dkfmr4w3phwvkf0xkn81w"; depends=[Biostrings GenomicRanges IRanges Rhtslib SummarizedExperiment VariantAnnotation VGAM]; }; + deltaCaptureC = derive2 { name="deltaCaptureC"; version="1.8.0"; sha256="1gfh788xxamsf919bznwl1n5ycd81bcxw4mxcsib46fqmzxgh7vh"; depends=[DESeq2 GenomicRanges ggplot2 IRanges SummarizedExperiment tictoc]; }; + deltaGseg = derive2 { name="deltaGseg"; version="1.34.0"; sha256="090bkkd0sxkjxnparn7jyi59rk18vd3nid2sw66malvc4zx0b22y"; depends=[changepoint fBasics ggplot2 pvclust reshape scales tseries wavethresh]; }; + densvis = derive2 { name="densvis"; version="1.4.0"; sha256="0h4j307zw0hxpi8fpm86x3l6nq514y94gvn3qyc5hp6b521f4frd"; depends=[assertthat basilisk Rcpp reticulate]; }; + derfinder = derive2 { name="derfinder"; version="1.28.0"; sha256="1hxf40ijrlmyrv3rprv5wx3am2vraplbsfg77kk9qd3gjq6q3ylp"; depends=[AnnotationDbi BiocGenerics BiocParallel bumphunter derfinderHelper GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges Hmisc IRanges qvalue Rsamtools rtracklayer S4Vectors]; }; + derfinderHelper = derive2 { name="derfinderHelper"; version="1.28.0"; sha256="06x0wy2wzpngak1pnrj2p0xzlx1nbcz0hs3p9q5ic6ib2rgwrh35"; depends=[IRanges Matrix S4Vectors]; }; + derfinderPlot = derive2 { name="derfinderPlot"; version="1.27.1"; sha256="0k074mh4rrm3lrrvbp95ss46ax7sbm1igfr5qpz7qdr0savgw5ki"; depends=[derfinder GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 IRanges limma plyr RColorBrewer reshape2 S4Vectors scales]; }; + diffGeneAnalysis = derive2 { name="diffGeneAnalysis"; version="1.76.0"; sha256="1aprngqc2aqdw91q9c57y15xpkm4da4czf8ki55vnyngb9nlpabp"; depends=[minpack_lm]; }; + diffHic = derive2 { name="diffHic"; version="1.26.0"; sha256="0xhm6jgalgb2v8k99k1z99rwhcaqjhhklm5ih8b6ayfmgmf6x7ih"; depends=[BiocGenerics Biostrings BSgenome csaw edgeR GenomeInfoDb GenomicRanges InteractionSet IRanges limma locfit Rcpp rhdf5 Rhtslib Rsamtools rtracklayer S4Vectors SummarizedExperiment zlibbioc]; }; + diffUTR = derive2 { name="diffUTR"; version="1.2.0"; sha256="0lmsbaaqzzvk25bxjb8ngvx0l5aqsmk7nng5kv4nghm7y7ipp1gf"; depends=[ComplexHeatmap DEXSeq dplyr edgeR ensembldb GenomeInfoDb GenomicRanges ggplot2 ggrepel IRanges limma matrixStats Rsubread rtracklayer S4Vectors stringi SummarizedExperiment viridisLite]; }; + diffcoexp = derive2 { name="diffcoexp"; version="1.14.0"; sha256="0j32si3bn47qabvzgzvc3a081r0ia1k2r3h4i4wh0gmz4yh29l4a"; depends=[BiocGenerics DiffCorr igraph psych SummarizedExperiment WGCNA]; }; + diffcyt = derive2 { name="diffcyt"; version="1.14.0"; sha256="1yc9mlc0ifb7h6rzskq97bsdq1kwdp5qq9l9mciwyxf6yjkmv5ni"; depends=[circlize ComplexHeatmap dplyr edgeR flowCore FlowSOM limma lme4 magrittr multcomp reshape2 S4Vectors SummarizedExperiment tidyr]; }; + diffloop = derive2 { name="diffloop"; version="1.22.0"; sha256="1i2ri1cxsqwqc6fhnbkvdwqbgyfd407wn0qidq7nrqcamli8acvs"; depends=[Biobase biomaRt data_table dplyr edgeR foreach GenomeInfoDb GenomicRanges ggplot2 IRanges limma locfit matrixStats pbapply plyr readr reshape2 rtracklayer S4Vectors statmod Sushi]; }; + diffuStats = derive2 { name="diffuStats"; version="1.14.0"; sha256="014bk8fg3yhkrwass4zm5bisdf2m7mdcriykpzybzpgfy66d7mls"; depends=[checkmate expm igraph MASS Matrix plyr precrec Rcpp RcppArmadillo RcppParallel]; }; + diggit = derive2 { name="diggit"; version="1.26.0"; sha256="19phk2qdc5a6r1g9awjm1icnq96sj3nd8m2cylr3d3qamkxvdhyy"; depends=[Biobase ks viper]; }; + dir_expiry = derive2 { name="dir.expiry"; version="1.2.0"; sha256="1bwmlxmizhmim2l0mk406hxfr5mnmsg5zbqkjyygaipa971m9s00"; depends=[filelock]; }; + discordant = derive2 { name="discordant"; version="1.18.0"; sha256="0r536qgd8v85rnzk1x3x85fnrs8wc6nm4dp25h7n6bj3j6mw6fjm"; depends=[Biobase biwt gtools MASS]; }; + distinct = derive2 { name="distinct"; version="1.6.0"; sha256="029wp2ag67w6d2pc9wzj3kjznfvc4y9rs4vcj54ncv6sd78il1kn"; depends=[doParallel doRNG foreach ggplot2 limma Matrix Rcpp RcppArmadillo scater SingleCellExperiment SummarizedExperiment]; }; + dittoSeq = derive2 { name="dittoSeq"; version="1.6.0"; sha256="1rn92msi1py9fvvsspdzpik86a97jy0v8k2z4bnnzsvq9kijq1y1"; depends=[colorspace cowplot ggplot2 ggrepel ggridges gridExtra pheatmap reshape2 S4Vectors SingleCellExperiment SummarizedExperiment]; }; + divergence = derive2 { name="divergence"; version="1.10.0"; sha256="11hn5j4frsd23fyvn3i0qp2n4nzlv0vjmlj0npmg9nf0xb5cpwrc"; depends=[SummarizedExperiment]; }; + dks = derive2 { name="dks"; version="1.40.0"; sha256="0vny28hbrxfh1rblkz6w02knx8sr6yv2hsdxj0idw02aamxxi3m8"; depends=[cubature]; }; + dmrseq = derive2 { name="dmrseq"; version="1.14.0"; sha256="1d6y6rbvcgprmzqkdzxg5csf0yv845d9vw10pcd1pzyndrama1vd"; depends=[AnnotationHub annotatr BiocParallel bsseq bumphunter DelayedMatrixStats GenomeInfoDb GenomicRanges ggplot2 IRanges locfit matrixStats nlme outliers RColorBrewer rtracklayer S4Vectors]; }; + doppelgangR = derive2 { name="doppelgangR"; version="1.22.0"; sha256="18n6gap62xwphwg8yldvh3k5xz56917w007k804610dpd8gl7ijm"; depends=[Biobase BiocParallel digest impute mnormt SummarizedExperiment sva]; }; + doseR = derive2 { name="doseR"; version="1.10.0"; sha256="0lwvmsirvpkli543q9k02hf2ra7hny7rljkmn0jiwd47j642fqhr"; depends=[digest edgeR lme4 matrixStats mclust RUnit S4Vectors SummarizedExperiment]; }; + dpeak = derive2 { name="dpeak"; version="1.6.0"; sha256="12a1zz8zj0kp2iprnckij98illb9jf2lg4nz144wjlfwiv3mq0y6"; depends=[BSgenome IRanges MASS Rcpp]; }; + drawProteins = derive2 { name="drawProteins"; version="1.14.0"; sha256="1imsisl2bwzf3dzhslmlqm6zwzil8a2l8kk7fkkc0dqka63kcwai"; depends=[dplyr ggplot2 httr readr tidyr]; }; + drugTargetInteractions = derive2 { name="drugTargetInteractions"; version="1.2.0"; sha256="1jcmkh1rjhk862f6kzqfw9zkk795yiwxq57bxbsqf9kwyykgwq7y"; depends=[AnnotationFilter BiocFileCache biomaRt dplyr ensembldb rappdirs RSQLite S4Vectors UniProt_ws]; }; + dualKS = derive2 { name="dualKS"; version="1.53.0"; sha256="16cfcylmmcj8x2808529lbpm7qbbrxygic0jkaglhqcdxgrqw3rw"; depends=[affy Biobase]; }; + dupRadar = derive2 { name="dupRadar"; version="1.24.0"; sha256="06s3661vlsy4n9p59wb8f9gmmwd2kwz0z2ydq2diix0hajz8h5fi"; depends=[Rsubread]; }; + dyebias = derive2 { name="dyebias"; version="1.54.0"; sha256="0iha3n4p01gphsp5jn5ypm9b8mfn2dlz1sdz179i5cmycwgg6p7s"; depends=[Biobase marray]; }; + easier = derive2 { name="easier"; version="1.0.0"; sha256="1wlpmx9ghbz9ikmw70b0lhsvkbcry5rmrkq8kxm0439wwwfd0ayj"; depends=[arules BiocParallel coin DESeq2 dorothea dplyr easierData ggplot2 ggrepel matrixStats progeny quantiseqr reshape2 rlang ROCR rstatix]; }; + easyRNASeq = derive2 { name="easyRNASeq"; version="2.30.0"; sha256="01i0698nvwr4qpbi5fff89lrw5wr3xkaa478wnxj81k86sfcr59k"; depends=[Biobase BiocFileCache BiocGenerics BiocParallel biomaRt Biostrings edgeR GenomeInfoDb genomeIntervals GenomicAlignments GenomicRanges IRanges locfit LSD rappdirs Rsamtools S4Vectors ShortRead SummarizedExperiment]; }; + easyreporting = derive2 { name="easyreporting"; version="1.6.0"; sha256="1ds7s0jb8xwfg7469k9n1v6fpx7mvln91a2fih8s70kgiz5kal6d"; depends=[rlang rmarkdown shiny]; }; + ecolitk = derive2 { name="ecolitk"; version="1.66.0"; sha256="0381xd6d6lkv9b0svsmxw1x32xygnj43al8dak1sqfyy74d8xdn1"; depends=[Biobase]; }; + edge = derive2 { name="edge"; version="2.26.0"; sha256="00cjg9nf4aqdw3p2wp16jyi9n0q3vh7fyyx1lpa5vx4qwlj96y2i"; depends=[Biobase jackstraw MASS qvalue snm sva]; }; + edgeR = derive2 { name="edgeR"; version="3.36.0"; sha256="1d18kdfi9vjhhw5kwfy5airrd3c16fh4wbwppbhwgawm038mwavk"; depends=[limma locfit Rcpp]; }; + eegc = derive2 { name="eegc"; version="1.20.0"; sha256="0x35z9nwylb3jq56w31z9zb2q6b52fqk0sb70l3axqamb8yym0lc"; depends=[AnnotationDbi clusterProfiler DESeq2 DOSE edgeR ggplot2 gplots igraph limma org_Hs_eg_db org_Mm_eg_db pheatmap R_utils S4Vectors sna wordcloud]; }; + eiR = derive2 { name="eiR"; version="1.34.0"; sha256="1dppl1x5s0apz7djdi3qzdv8i0q7iqh6q9dcxx1g0hfn2v945jfn"; depends=[BiocGenerics ChemmineR DBI digest RcppAnnoy RCurl RUnit snow snowfall]; }; + eisaR = derive2 { name="eisaR"; version="1.6.0"; sha256="1gfcmxdbzpb8rfdk7c1y7jhqanipa6jyxy2cg6f9jsp9x73fs61w"; depends=[BiocGenerics edgeR GenomicRanges IRanges limma S4Vectors SummarizedExperiment]; }; + enhancerHomologSearch = derive2 { name="enhancerHomologSearch"; version="1.0.0"; sha256="1v8zgp33kabf5qjf7aklb1lbzsvlh1jv30g0f79djf2i9khcxlkm"; depends=[BiocFileCache BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges httr IRanges jsonlite Matrix motifmatchr Rcpp rtracklayer S4Vectors]; }; + enrichTF = derive2 { name="enrichTF"; version="1.10.0"; sha256="0ssjsl5vh0wdq0584yl6c61d8bp5n3qvkgfrqdlpjfwb7b7gh4xv"; depends=[BiocGenerics BSgenome clusterProfiler GenomeInfoDb GenomicRanges ggplot2 ggpubr heatmap3 IRanges JASPAR2018 magrittr motifmatchr pipeFrame R_utils rmarkdown rtracklayer S4Vectors TFBSTools]; }; + enrichplot = derive2 { name="enrichplot"; version="1.14.1"; sha256="0nsx96mkcg0hhg3x8jndzq3xvq9bq7m4yf1b3ry73b17ladx81ch"; depends=[aplot DOSE ggplot2 ggraph ggtree GOSemSim igraph magrittr plyr purrr RColorBrewer reshape2 scatterpie shadowtext yulab_utils]; }; + ensemblVEP = derive2 { name="ensemblVEP"; version="1.36.0"; sha256="1b9i8qv16mrr31qpvvcimcd80nkykky8dygi90jinkzgvkzdxi64"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges S4Vectors SummarizedExperiment VariantAnnotation]; }; + ensembldb = derive2 { name="ensembldb"; version="2.18.0"; sha256="02rdbqp33g488w1df1rgp0dg63qrr6w2kmgigxzc8l9wmrvj0y1j"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges ProtGenerics Rsamtools RSQLite rtracklayer S4Vectors]; }; + epiNEM = derive2 { name="epiNEM"; version="1.18.0"; sha256="0xs9jzy0d9iv45d5ina7ki79wix96318yp17mxhp1l4vdkpm3fk7"; depends=[BoolNet e1071 graph gtools igraph latex2exp lattice latticeExtra minet mnem pcalg RColorBrewer]; }; + epialleleR = derive2 { name="epialleleR"; version="1.2.0"; sha256="1zgwwzrg9ngsfq186qsmvgwxcz0b9avr8wk1yadjlrjc9avgh2d3"; depends=[BH BiocGenerics data_table GenomeInfoDb GenomicRanges Rcpp Rhtslib stringi SummarizedExperiment VariantAnnotation zlibbioc]; }; + epidecodeR = derive2 { name="epidecodeR"; version="1.2.0"; sha256="1fy3i7djpj2inlcpa2h4n5hzp0q6a555sc5axg1jwxiala9l8siv"; depends=[dplyr EnvStats GenomicRanges ggplot2 ggpubr IRanges rstatix rtracklayer]; }; + epigenomix = derive2 { name="epigenomix"; version="1.34.0"; sha256="0yyxm97cqyy9r6bxsw40dl8nh2f1lxw41w3i3av8lixp72wxy3ml"; depends=[beadarray Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges MCMCpack Rsamtools S4Vectors SummarizedExperiment]; }; + epigraHMM = derive2 { name="epigraHMM"; version="1.2.0"; sha256="1m65d0dlp2lyrg1wh3c9wdcbd5p8pmm3w3z1x5hwcdj5ls9qfan5"; depends=[bamsignals csaw data_table GenomeInfoDb GenomicRanges ggplot2 ggpubr GreyListChIP IRanges limma magrittr MASS Matrix pheatmap Rcpp RcppArmadillo rhdf5 Rhdf5lib Rsamtools rtracklayer S4Vectors scales SummarizedExperiment]; }; + epihet = derive2 { name="epihet"; version="1.10.0"; sha256="086x87yzjmg0l95kd0mdxysqgdj7bmc4mr95h6mkyv70nsdfyfs4"; depends=[data_table doParallel EntropyExplorer foreach GenomicRanges ggplot2 igraph IRanges pheatmap qvalue ReactomePA Rtsne S4Vectors WGCNA]; }; + epistack = derive2 { name="epistack"; version="1.0.0"; sha256="0g5v30v7afx5wppg1fxpqba0inn6k25ljy7x3fim6vcwdhdnl95n"; depends=[BiocGenerics GenomicRanges IRanges plotrix S4Vectors viridisLite]; }; + epivizr = derive2 { name="epivizr"; version="2.24.0"; sha256="1xxs34580gm2l222qf9m63id8282n2vg41s8ng6mrrd239pxpv2f"; depends=[bumphunter epivizrData epivizrServer GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + epivizrChart = derive2 { name="epivizrChart"; version="1.16.0"; sha256="1w3pxwwgl28v62sc7vrq1nqkj68mkj213bi3ccfxhl54b9aa8vnb"; depends=[BiocGenerics epivizrData epivizrServer htmltools rjson]; }; + epivizrData = derive2 { name="epivizrData"; version="1.22.0"; sha256="0zmn7fdbrnc96jrdk5wb2fnjip9x0i284w3g77lqi8jqjv9y4bm5"; depends=[Biobase ensembldb epivizrServer GenomeInfoDb GenomicFeatures GenomicRanges IRanges OrganismDbi S4Vectors SummarizedExperiment]; }; + epivizrServer = derive2 { name="epivizrServer"; version="1.22.0"; sha256="1amv6jj0k66k26hznqbff9hmf534sl8bhdiww4ny6szcmpl04jcq"; depends=[httpuv mime R6 rjson]; }; + epivizrStandalone = derive2 { name="epivizrStandalone"; version="1.22.0"; sha256="1a20fma8iybbd4mgxx5wyhlnraxzxxmgrv40jm55a59g1q8rbqa9"; depends=[BiocGenerics epivizr epivizrServer GenomeInfoDb GenomicFeatures git2r S4Vectors]; }; + erccdashboard = derive2 { name="erccdashboard"; version="1.28.0"; sha256="1hjn52mn07jz03xisbpnyxacg51i53p9ay485q6zfp77xbdkgvln"; depends=[edgeR ggplot2 gplots gridExtra gtools limma locfit MASS plyr qvalue reshape2 ROCR scales stringr]; }; + erma = derive2 { name="erma"; version="1.10.0"; sha256="0pb9ar1wy613vg6sfdmn8n4cfv1328m8bagnigsjdb3hc3hbir4z"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel GenomeInfoDb GenomicFiles GenomicRanges ggplot2 Homo_sapiens IRanges rtracklayer S4Vectors shiny SummarizedExperiment]; }; + esATAC = derive2 { name="esATAC"; version="1.16.0"; sha256="1gck90pdhcc8y012rl3kcysl7pm6y7xx0xc8nnrfhw629rkg6c6f"; depends=[AnnotationDbi BiocGenerics BiocManager Biostrings BSgenome ChIPseeker clusterProfiler corrplot digest GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 igraph IRanges JASPAR2018 knitr magrittr motifmatchr pipeFrame R_utils Rbowtie2 Rcpp rJava rmarkdown Rsamtools rtracklayer S4Vectors ShortRead TFBSTools VennDiagram]; }; + escape = derive2 { name="escape"; version="1.4.0"; sha256="04iwvr9m62vzv80k40cvicji5x7ahj9lx28iz42kqwz8cqxv28l2"; depends=[BiocParallel dplyr ggplot2 ggridges GSEABase GSVA limma Matrix msigdbr SingleCellExperiment]; }; + esetVis = derive2 { name="esetVis"; version="1.20.0"; sha256="1052xznc94g35j8pxix53adzrd49965j8fyx149as7acqqh022dy"; depends=[Biobase hexbin MASS MLP mpm Rtsne]; }; + eudysbiome = derive2 { name="eudysbiome"; version="1.24.0"; sha256="16fb0ajqm4mys0l65fwnjcpbpwiaz13zgqa4qhs2dch9d0gi4bap"; depends=[Biostrings plyr R_utils Rsamtools]; }; + evaluomeR = derive2 { name="evaluomeR"; version="1.10.0"; sha256="13vv3va8jn8pwwc05ikxwld57n2m1xy4y38ngpp2ghwlmqcl966l"; depends=[class cluster corrplot flexmix fpc ggdendro ggplot2 kableExtra MASS matrixStats mclust MultiAssayExperiment plotrix prabclus randomForest Rdpack reshape2 SummarizedExperiment]; }; + exomeCopy = derive2 { name="exomeCopy"; version="1.40.0"; sha256="1gxcqz0pmbccicqq72fcbjw11q57v1wxhi4hdhm2akh6w4j67r4c"; depends=[GenomeInfoDb GenomicRanges IRanges Rsamtools]; }; + exomePeak2 = derive2 { name="exomePeak2"; version="1.6.0"; sha256="15c56gqi4i3h7jn1654r059f8v2ps1sz4iz5a7ah14nb7iaixzid"; depends=[apeglm Biobase BiocGenerics BiocParallel Biostrings BSgenome cqn DESeq2 genefilter GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges mclust reshape2 Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; + fCCAC = derive2 { name="fCCAC"; version="1.20.0"; sha256="0dvkkqgl89cikpkgj659pkig9fq9bb41jx4za8wy0a7ikkhm2q9f"; depends=[ComplexHeatmap fda genomation GenomicRanges ggplot2 IRanges RColorBrewer S4Vectors]; }; + fCI = derive2 { name="fCI"; version="1.24.0"; sha256="16mxqwia3an84xzjhx4gdgmr55k0j5msa0bf9pvi6z5yvy1xmaqv"; depends=[FNN gtools psych rgl VennDiagram zoo]; }; + fabia = derive2 { name="fabia"; version="2.40.0"; sha256="1dj7kxlajgwaiqfv41vl3zyif9lfa7341rki7rbdnadl1ir3dj11"; depends=[Biobase]; }; + factDesign = derive2 { name="factDesign"; version="1.70.0"; sha256="0dhbzpmhf8lrdxnlq229rbnqrzkd2p0hmj1yhbfv0k5gbg5xbswv"; depends=[Biobase]; }; + famat = derive2 { name="famat"; version="1.4.0"; sha256="1wpbczp3bl9vzcmfv9p15qlya6c27ybayqq3kdnhpvs41imxmwd7"; depends=[clusterProfiler dplyr DT GO_db gprofiler2 KEGGREST magrittr MPINet ontologyIndex org_Hs_eg_db plotly reactome_db rWikiPathways shiny shinyBS shinydashboard stringr tidyr]; }; + farms = derive2 { name="farms"; version="1.46.0"; sha256="1m28q80i1fm0nai9avsxv73gkbhynjb6yymk7z837aiyxq0488w4"; depends=[affy Biobase MASS]; }; + fastLiquidAssociation = derive2 { name="fastLiquidAssociation"; version="1.30.0"; sha256="1fzbjya0gwxy6xdl2vzy8by1y238mdbs99mhmbyqbhvlixc89267"; depends=[doParallel Hmisc impute LiquidAssociation preprocessCore WGCNA]; }; + fastseg = derive2 { name="fastseg"; version="1.40.0"; sha256="1ds0hhc41nhfj3lmvld8nk2p547wd80b3yq7fjlf3dl3wfaxzy80"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors]; }; + fcScan = derive2 { name="fcScan"; version="1.8.0"; sha256="0b161ayq4m9xxfs0lgw632lgygzabz8gjl0n75050pa7qaazknvd"; depends=[doParallel foreach GenomicRanges IRanges plyr rtracklayer SummarizedExperiment VariantAnnotation]; }; + fcoex = derive2 { name="fcoex"; version="1.8.0"; sha256="0kxzzyfyrdvw1prj8l3hg96y7k6d64gg34ibp6iq3kfwl4qy9qvn"; depends=[clusterProfiler data_table dplyr FCBF ggplot2 ggrepel igraph intergraph Matrix network pathwayPCA progress scales SingleCellExperiment sna stringr]; }; + fdrame = derive2 { name="fdrame"; version="1.66.0"; sha256="0a5x51yrimv0phvx29s1x4dy1hivnnnm2jrbydl2ib552s407fwy"; depends=[]; }; + fedup = derive2 { name="fedup"; version="1.2.0"; sha256="0ixhq343x9jkwd10wwfbvvb0l58bd1mhilh1qlw3cyf7386g5f9k"; depends=[data_table dplyr forcats ggplot2 ggthemes openxlsx RColorBrewer RCy3 tibble]; }; + ffpe = derive2 { name="ffpe"; version="1.38.0"; sha256="0l6g0k2fg3xxncqx33xfckv8wmkbvpf5qqixi3zm36qmpm9xqagb"; depends=[affy Biobase BiocGenerics lumi methylumi sfsmisc TTR]; }; + fgga = derive2 { name="fgga"; version="1.2.0"; sha256="0hrvgim9xdqymar3qswwybmmv8qmr5glqssckz3lbd04mnf07icq"; depends=[BiocFileCache curl e1071 graph gRbase jsonlite RBGL]; }; + fgsea = derive2 { name="fgsea"; version="1.20.0"; sha256="10flcdm4b1kxnsvhl4k6mwkzb1vbai33k291j8nsrhj2cl5l8gm9"; depends=[BH BiocParallel data_table fastmatch ggplot2 gridExtra Matrix Rcpp]; }; + fishpond = derive2 { name="fishpond"; version="2.0.0"; sha256="11cg0fv67ykilr7vqlmcd1vcp4bqnknxhznxhnxlhfby5c68lbjk"; depends=[abind gtools jsonlite Matrix matrixStats qvalue Rcpp S4Vectors SingleCellExperiment SummarizedExperiment svMisc]; }; + flagme = derive2 { name="flagme"; version="1.50.0"; sha256="187l1akzqawp6bqlshhixna0672y5pabcaaqk875a5llvbncixhq"; depends=[CAMERA gcspikelite gplots MASS SparseM xcms]; }; + flowAI = derive2 { name="flowAI"; version="1.24.0"; sha256="12h4vbd3799i1g10jmf10lm1p0if4psx5ypzy64j4rndydhy449j"; depends=[changepoint flowCore ggplot2 knitr plyr RColorBrewer reshape2 rmarkdown scales]; }; + flowBeads = derive2 { name="flowBeads"; version="1.32.0"; sha256="0834n338bsbjqpsy6g3idvvwx7bmmg7cd08hmna1vsnk4hl8fqim"; depends=[Biobase flowCore knitr rrcov xtable]; }; + flowBin = derive2 { name="flowBin"; version="1.30.0"; sha256="0vywz8pcfvfq4xdrx69ivb105181lxdvapdw43f4x7wqp1pf354z"; depends=[BiocGenerics class flowCore flowFP limma snow]; }; + flowCHIC = derive2 { name="flowCHIC"; version="1.28.0"; sha256="1nh1dy0fg53mzi81gy2kaac1scjllc75w1hms0v3s9bgvrvc00aw"; depends=[EBImage flowCore ggplot2 hexbin vegan]; }; + flowCL = derive2 { name="flowCL"; version="1.32.0"; sha256="0rx3dhxhfq98xpjwsl4r0x1sympicdpvrifbsa380n0dkp85zp27"; depends=[graph Rgraphviz SPARQL]; }; + flowClean = derive2 { name="flowClean"; version="1.32.0"; sha256="1pxc07557667n00dygxcm3r8xki85r63ys06gqwqbsd4x26v1zj7"; depends=[bit changepoint flowCore sfsmisc]; }; + flowClust = derive2 { name="flowClust"; version="3.32.0"; sha256="0ch7mkq40qcnxwgzy51vjdlwyzx4bvp03vpdm6dwjc6qy8a6qfzi"; depends=[Biobase BiocGenerics clue corpcor ellipse flowCore flowViz graph mnormt]; }; + flowCore = derive2 { name="flowCore"; version="2.6.0"; sha256="0zbd2hrdbb6r0np6nd3ab8nlcf9l57vcwnnhbqkbas8y0c2i2mwp"; depends=[BH Biobase BiocGenerics cytolib matrixStats Rcpp RcppArmadillo RProtoBufLib S4Vectors]; }; + flowCut = derive2 { name="flowCut"; version="1.4.0"; sha256="19ri0as63i17qhl9lmn8pzlfzyc9rjv9zvlf1blbfvxrmry79chd"; depends=[Cairo e1071 flowCore flowDensity]; }; + flowCyBar = derive2 { name="flowCyBar"; version="1.30.0"; sha256="038bqv4pp69ipmk3a8n1r2444r24d1h8mdyzdigmhg7pkxx0aggp"; depends=[gplots vegan]; }; + flowDensity = derive2 { name="flowDensity"; version="1.28.0"; sha256="105klbdliakyypggnkgymf8hs08cirlhmlgccmhcwbiv9gndsc3p"; depends=[car flowCore flowViz flowWorkspace gplots RFOC rgeos sp]; }; + flowFP = derive2 { name="flowFP"; version="1.52.0"; sha256="156p4b0m4rin891zfp6959s0sjyv9rmmxb7fjw7q6hlyzm2xpqgx"; depends=[Biobase BiocGenerics flowCore flowViz]; }; + flowGraph = derive2 { name="flowGraph"; version="1.2.0"; sha256="1zyf7yslx5q6qi9is7jhn8qp0s3418z2jf9axrjj1y1fsz2v0ab4"; depends=[data_table effsize furrr future ggiraph ggplot2 ggrepel gridExtra htmlwidgets igraph Matrix matrixStats purrr Rdpack stringi stringr visNetwork]; }; + flowMap = derive2 { name="flowMap"; version="1.32.0"; sha256="0jvjpr2r0gb5yyg7xjp112iypsrgqim0ifwr6p46m3jshha8r6bp"; depends=[abind ade4 doParallel Matrix reshape2 scales]; }; + flowMatch = derive2 { name="flowMatch"; version="1.30.0"; sha256="020mh29l53zihi6h24sa6m7z447g8bgfw5s1fsm6j7yq0hnkxbx4"; depends=[Biobase flowCore Rcpp]; }; + flowMeans = derive2 { name="flowMeans"; version="1.54.0"; sha256="0iy8hvi0inj1ylhdx6q4mya9k55iazprz6fdrnq1mxb2iyndzsl6"; depends=[Biobase feature flowCore rrcov]; }; + flowMerge = derive2 { name="flowMerge"; version="2.42.0"; sha256="1bi1iqmyz2d0w9yy3nxl0wfa74hfk0ffp2yxh6ya6nx4rfz5jbba"; depends=[feature flowClust flowCore foreach graph Rgraphviz rrcov snow]; }; + flowPeaks = derive2 { name="flowPeaks"; version="1.40.0"; sha256="14wb1cvnz3v4vmi2c4pki8wm602zbjdvf3c7qkkwhr389p3hqmsi"; depends=[]; }; + flowPloidy = derive2 { name="flowPloidy"; version="1.20.0"; sha256="0g8aym8grvhvrgxl7453x9bbdc09ag7hw9mg41jxrzzvwzvrdy8r"; depends=[car caTools flowCore knitr minpack_lm rmarkdown shiny]; }; + flowPlots = derive2 { name="flowPlots"; version="1.42.0"; sha256="01r6c0hwg34ym0gziirrbk96mapn9pkxhshn0gwb1rqw3jw56cfm"; depends=[]; }; + flowSpecs = derive2 { name="flowSpecs"; version="1.8.0"; sha256="018y54w3dg8myywcda41lk07mbd5y99q07i9az0f938a5mb44vd8"; depends=[Biobase BiocGenerics BiocParallel flowCore ggplot2 reshape2 zoo]; }; + flowStats = derive2 { name="flowStats"; version="4.6.0"; sha256="0jjfq66m4lbpkynwxaparkd05znhp3jl9ccj37gyghly294x3rm9"; depends=[Biobase BiocGenerics cluster fda flowCore flowViz flowWorkspace KernSmooth ks lattice MASS ncdfFlow RColorBrewer rrcov]; }; + flowTime = derive2 { name="flowTime"; version="1.17.0"; sha256="160vx3zj34hf75rwbs0v0xa0skyzjg5q6l2qgajfyhz436i95lxl"; depends=[dplyr flowCore magrittr plyr rlang tibble]; }; + flowTrans = derive2 { name="flowTrans"; version="1.46.0"; sha256="1fkpma9a2097qay6mkswb7sb8jshvjmjldppz67l840d7mhkkpab"; depends=[flowClust flowCore flowViz]; }; + flowUtils = derive2 { name="flowUtils"; version="1.58.0"; sha256="0rgybkzbn8c3kpbz0ddghp1np0gka0cgiqvkk5jbnhlgf4s07161"; depends=[Biobase corpcor flowCore graph RUnit XML]; }; + flowVS = derive2 { name="flowVS"; version="1.26.0"; sha256="02vikjzbi5r426l6085rfdqqvy8n8yaq7fwli18q385nb81vah7i"; depends=[flowCore flowStats flowViz]; }; + flowViz = derive2 { name="flowViz"; version="1.58.0"; sha256="039sh7qn25gp2b34khs8dyrdpxyapsjlprrvxlz8f7dl8gmggl04"; depends=[Biobase flowCore hexbin IDPmisc KernSmooth lattice latticeExtra MASS RColorBrewer]; }; + flowWorkspace = derive2 { name="flowWorkspace"; version="4.6.0"; sha256="11ni7kgk9s1fz3lvg85s6r7x2fhk4m7cdpilji05ya12jsyr3fig"; depends=[aws_s3 aws_signature BH Biobase BiocGenerics cytolib data_table DelayedArray digest dplyr flowCore ggplot2 graph lattice latticeExtra matrixStats ncdfFlow RBGL Rcpp RcppArmadillo RcppParallel Rgraphviz Rhdf5lib RProtoBufLib S4Vectors scales XML]; }; + flowcatchR = derive2 { name="flowcatchR"; version="1.28.0"; sha256="1qrlswb3drwpglry4d79gc41g40wz5clwlvx1kzxrd4k0j9h6mv4"; depends=[abind BiocParallel colorRamps EBImage plotly shiny]; }; + fmcsR = derive2 { name="fmcsR"; version="1.36.0"; sha256="0mshslfj7jsix1yc03s54spbbi56zspic49kfsjfv8npikj1i5w0"; depends=[BiocGenerics ChemmineR RUnit]; }; + fmrs = derive2 { name="fmrs"; version="1.4.0"; sha256="16f60b1ch5d0n9h29d8yzvfi7cr02pjgj8k92cw4cjsrvi8kdgwn"; depends=[survival]; }; + fobitools = derive2 { name="fobitools"; version="1.2.0"; sha256="0n0accmkh1nvlinniggy25a1b799119zc805p89cn0zs9cfm4s8r"; depends=[clisymbols crayon dplyr fgsea ggplot2 ggraph magrittr ontologyIndex purrr RecordLinkage stringr textclean tictoc tidygraph tidyr vroom]; }; + frenchFISH = derive2 { name="frenchFISH"; version="1.6.0"; sha256="1mnihakvwh38ww64fklj16bvcw22q8x3b84kia0pf9ccznhk6vs3"; depends=[MCMCpack NHPoisson]; }; + frma = derive2 { name="frma"; version="1.46.0"; sha256="05jzjld2kbdbkz3l0xzd6898d6r9b0pbl96vm27w651zcg7mhrvv"; depends=[affy Biobase BiocGenerics DBI MASS oligo oligoClasses preprocessCore]; }; + frmaTools = derive2 { name="frmaTools"; version="1.46.0"; sha256="181kkqsqxbzr3fpbrcyxzawv6g0gci51k7pg6wd7nlxhxdvsl667"; depends=[affy Biobase DBI preprocessCore]; }; + funtooNorm = derive2 { name="funtooNorm"; version="1.18.0"; sha256="1qbbivg2kiwvamdslfxdn3h0cdzz5gg2418ybymzyamhipc3457r"; depends=[GenomeInfoDb IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest matrixStats minfi pls]; }; + gCrisprTools = derive2 { name="gCrisprTools"; version="2.0.0"; sha256="1aqcz6m4hj8b7a8wbnq1gj2b24p45cnj03xkcklhyf17vyfch0jh"; depends=[Biobase ComplexHeatmap ggplot2 limma rmarkdown RobustRankAggreg SummarizedExperiment]; }; + gaga = derive2 { name="gaga"; version="2.40.0"; sha256="1ax91nc57h3b7xs0skpwz15wkdp5ixcs0481yllhjk2ky1m26gbl"; depends=[Biobase coda EBarrays mgcv]; }; + gage = derive2 { name="gage"; version="2.44.0"; sha256="1spndmvl8wlz3z3wsvzi0fg9nzk81xi8c220pg2rf81j9181nkar"; depends=[AnnotationDbi GO_db graph KEGGREST]; }; + gaggle = derive2 { name="gaggle"; version="1.62.0"; sha256="0qpr7pjsi3grpd33343x3gwdmiglxhcxrvi2w864rr89dxfjg188"; depends=[graph rJava RUnit]; }; + gaia = derive2 { name="gaia"; version="2.38.0"; sha256="0kx38vy9jmrzcbclbpnssd1v44ygxkvzag9wy22bl4spm6injnwy"; depends=[]; }; + garfield = derive2 { name="garfield"; version="1.22.0"; sha256="0jngv9ncx1bwqrwmzdbb17771n7j8xd4wa04jcbxsa32ngc69fh3"; depends=[]; }; + gcapc = derive2 { name="gcapc"; version="1.18.0"; sha256="05vck8414iwqrx53l8k02l1wzhb3xg1bsx7dj4vjjndcl2xqs4lz"; depends=[BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS matrixStats Rsamtools S4Vectors]; }; + gcatest = derive2 { name="gcatest"; version="1.24.0"; sha256="0wll4r7npi09rxrkgq3x284lkjdaakxlf7x9a86s6a517wnlficq"; depends=[lfa]; }; + gcrma = derive2 { name="gcrma"; version="2.66.0"; sha256="0h7dl4if6skbcqdjdzqyghyswhwpx7xvb54lffz4wdaxpabp3001"; depends=[affy affyio Biobase BiocManager Biostrings XVector]; }; + gdsfmt = derive2 { name="gdsfmt"; version="1.30.0"; sha256="147i33sb65n3cl3ibmjzgfm7i4ljy640k18mzknvc18v1906j9vp"; depends=[]; }; + geNetClassifier = derive2 { name="geNetClassifier"; version="1.34.0"; sha256="1phyphdc1i55ab1a05633b0p41q8n7w0byp1plgcav2s3h8mk1km"; depends=[Biobase e1071 EBarrays minet]; }; + gemini = derive2 { name="gemini"; version="1.8.0"; sha256="1s14k1jhbd1i67wfpcmkcqy7l887acksslryhmsxivlrksz8ndd4"; depends=[dplyr ggplot2 magrittr mixtools pbmcapply scales]; }; + genArise = derive2 { name="genArise"; version="1.70.0"; sha256="18lh179nyc83s3srq7k4jqih93a6yi78kxv7n3g8afn73axwaknz"; depends=[locfit tkrplot xtable]; }; + genbankr = derive2 { name="genbankr"; version="1.22.0"; sha256="1wfcgyzj3fjv7fpjv1jv8dzyh0sgpgazrmx03cgldp9ys2110rny"; depends=[Biobase BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges rtracklayer S4Vectors VariantAnnotation]; }; + geneAttribution = derive2 { name="geneAttribution"; version="1.20.0"; sha256="1vyyh3yfq108l8g3qfp6vc1pkr6n26f6y870yax23m6lvds6fyrn"; depends=[BiocGenerics GenomeInfoDb GenomicFeatures GenomicRanges IRanges org_Hs_eg_db rtracklayer]; }; + geneClassifiers = derive2 { name="geneClassifiers"; version="1.18.0"; sha256="1bq14251cdr444bi3mf4875cr0hzm9sxiajg3kbc35602fdkh739"; depends=[Biobase BiocGenerics]; }; + geneRecommender = derive2 { name="geneRecommender"; version="1.66.0"; sha256="11mzy89y8ij3qhsknz48qdf54mz11di6m800rir7x302vxmag61b"; depends=[Biobase]; }; + geneRxCluster = derive2 { name="geneRxCluster"; version="1.30.0"; sha256="0l3v4m2bn9ff9j39k37h3xnrik022r70lkjf92npwxm5m0f03l8m"; depends=[GenomicRanges IRanges]; }; + geneXtendeR = derive2 { name="geneXtendeR"; version="1.20.0"; sha256="03vfb2si6wwn2ilqpiwacmbd3fj2lgzx71jf19sk7ypmnwld3zgc"; depends=[AnnotationDbi BiocStyle data_table dplyr GO_db networkD3 org_Rn_eg_db RColorBrewer rtracklayer SnowballC tm wordcloud]; }; + genefilter = derive2 { name="genefilter"; version="1.76.0"; sha256="05ba33m99dg414lasn36mjmkd9lvrxgpamy1qj2zvi31i9vkq6y2"; depends=[annotate AnnotationDbi Biobase BiocGenerics survival]; }; + genefu = derive2 { name="genefu"; version="2.26.0"; sha256="0l9a20fncrifrmfawsx3azaxvs2v2i41xifgk6zi6dfyj1k4h3sk"; depends=[AIMS amap biomaRt iC10 impute limma mclust survcomp]; }; + geneplast = derive2 { name="geneplast"; version="1.20.0"; sha256="13gfxsc3i2c25h51sx46lsaivy78vy8mbj9frh5kqc2i6lwrcmpi"; depends=[ape data_table igraph snow]; }; + geneplotter = derive2 { name="geneplotter"; version="1.72.0"; sha256="1b7ngp9l00vrymx3d3nsda546s7p4ifr90idn3x2v4ilf38rfhp8"; depends=[annotate AnnotationDbi Biobase BiocGenerics lattice RColorBrewer]; }; + genoCN = derive2 { name="genoCN"; version="1.46.0"; sha256="159hrdlyc6gh5j3qmrq2s1xpbyd29ahlggr7ccr0wlcl1m9zjfgm"; depends=[]; }; + genomation = derive2 { name="genomation"; version="1.26.0"; sha256="0ynwsrlnp98iyz4bl2s7plin0k9iy9zix4jy4v38lcqg6n4iz00j"; depends=[Biostrings BSgenome data_table GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridBase impute IRanges matrixStats plotrix plyr Rcpp readr reshape2 Rsamtools rtracklayer S4Vectors seqPattern]; }; + genomeIntervals = derive2 { name="genomeIntervals"; version="1.50.0"; sha256="1iac3cs8dknhzgnqf0874mfxsl0fmkvyay64g9xmbnrziqyxpr7j"; depends=[BiocGenerics GenomeInfoDb GenomicRanges intervals IRanges S4Vectors]; }; + genomes = derive2 { name="genomes"; version="3.24.0"; sha256="11x9q8ypryl37v494bcx0nnx1qcn4d7xn6hlnlaksarlcdb18rvg"; depends=[curl readr]; }; + genomicInstability = derive2 { name="genomicInstability"; version="1.0.0"; sha256="0r147z94pmf5lz68dfjq399szysj3imnlljz5n9mb0s4ypzw6p5k"; depends=[checkmate mixtools SummarizedExperiment]; }; + genotypeeval = derive2 { name="genotypeeval"; version="1.26.0"; sha256="166g9r6cx12qkira4l10379hswnmzjrhlknh910kdcrvjrwhixid"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges ggplot2 IRanges rtracklayer VariantAnnotation]; }; + genphen = derive2 { name="genphen"; version="1.22.0"; sha256="0zyhp542qfw10blg4vjarq7hdjxd84mlqjqvgaq7wdba87xgw05i"; depends=[Biostrings doParallel e1071 foreach ranger Rcpp rPref rstan]; }; + gep2pep = derive2 { name="gep2pep"; version="1.14.0"; sha256="01sqy4wg0aqka29j3bwi14892lp56jfipxh9py6fmnmkqz523b1l"; depends=[Biobase digest foreach GSEABase iterators repo rhdf5 XML]; }; + gespeR = derive2 { name="gespeR"; version="1.26.0"; sha256="0fd204abvfmgl8gqqr0vnsjsihmbi4wb9q6slbnf8b0gkhpqhafq"; depends=[Biobase biomaRt cellHTS2 doParallel dplyr foreach ggplot2 glmnet Matrix reshape2]; }; + getDEE2 = derive2 { name="getDEE2"; version="1.4.0"; sha256="04dqxx2qj3lwfpiv07s9dlgxc7as59cj7qbima9v09cnyciqkib6"; depends=[htm2txt SummarizedExperiment]; }; + geva = derive2 { name="geva"; version="1.2.0"; sha256="0rx67qq52iab9qs8apb5a9j91cg9gn7z2xs56wpccd2ba72wdic8"; depends=[dbscan fastcluster matrixStats]; }; + ggbio = derive2 { name="ggbio"; version="1.41.0"; sha256="02vpn2z0xlvahhr43hrimiljs446iwghiva4q6khi0a8r1jb5xsr"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings biovizBase BSgenome ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GGally ggplot2 gridExtra gtable Hmisc IRanges OrganismDbi reshape2 rlang Rsamtools rtracklayer S4Vectors scales SummarizedExperiment VariantAnnotation]; }; + ggcyto = derive2 { name="ggcyto"; version="1.22.0"; sha256="17dnmsa92gc2za36c3klgd7rklqlxrhkzs5ksnrc1am6a4knc0p1"; depends=[data_table flowCore flowWorkspace ggplot2 gridExtra hexbin ncdfFlow plyr RColorBrewer rlang scales]; }; + ggmsa = derive2 { name="ggmsa"; version="1.0.0"; sha256="0w4jqmsa87ijflmyya8fnwmgha6s5ax2r9d67b0a3d7yz3d1kms8"; depends=[aplot Biostrings dplyr ggalt ggforce ggplot2 magrittr R4RNA RColorBrewer seqmagick tidyr]; }; + ggspavis = derive2 { name="ggspavis"; version="1.0.0"; sha256="0lm7z8fzvw47zq618lfyxszy42qwhjr71xsyjsygvcl604z68jx0"; depends=[ggplot2 ggside SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; + ggtree = derive2 { name="ggtree"; version="3.2.0"; sha256="1c6b7kjh44k096v8mhn53abr181vpbn7s6ab7zk4phnsyfxsclxb"; depends=[ape aplot dplyr ggfun ggplot2 magrittr purrr rlang scales tidyr tidytree treeio yulab_utils]; }; + ggtreeExtra = derive2 { name="ggtreeExtra"; version="1.4.0"; sha256="0agvh1srirk5sv0ncj592ya86n6i3lp2yxijmykbwcqvy4ckb7cy"; depends=[ggnewscale ggplot2 ggtree rlang]; }; + girafe = derive2 { name="girafe"; version="1.46.0"; sha256="1al296zsp454lap05mh58y5lmrd0bfc4vmwaq5icnna56i4bi9m9"; depends=[Biobase BiocGenerics Biostrings genomeIntervals intervals IRanges Rsamtools S4Vectors ShortRead]; }; + glmGamPoi = derive2 { name="glmGamPoi"; version="1.6.0"; sha256="1yffzcy910cawz2lzjqg8h1hrjvrkhz3pdif5q352kpzjklr5qjm"; depends=[beachmat BiocGenerics DelayedArray DelayedMatrixStats HDF5Array matrixStats Rcpp RcppArmadillo SummarizedExperiment]; }; + glmSparseNet = derive2 { name="glmSparseNet"; version="1.12.0"; sha256="14qyj2jgjapjjznjzhslhcfbyxm9z0p28z8qrjqkxcb5z2hw9arq"; depends=[biomaRt dplyr forcats futile_logger ggplot2 glmnet glue httr loose_rock Matrix MultiAssayExperiment readr reshape2 sparsebn sparsebnUtils stringr SummarizedExperiment survminer]; }; + globalSeq = derive2 { name="globalSeq"; version="1.22.0"; sha256="16l9pa6siahmfl8k6m0s2cch5jfqz4pcx4xzqi8gsqn9szy6f6jq"; depends=[]; }; + globaltest = derive2 { name="globaltest"; version="5.48.0"; sha256="0wpd1b0wcwkhixd6qkaw0j3y94d5b4aabgz2gq0r72k84jbaxb9f"; depends=[annotate AnnotationDbi Biobase survival]; }; + gmapR = derive2 { name="gmapR"; version="1.36.0"; sha256="0vyw54ijfydb9mvp0znvk850na1iw51higjm3wx69l8jny9l8w60"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; + gmoviz = derive2 { name="gmoviz"; version="1.6.0"; sha256="1ipslmy35mzqdkj5nnjpzbniq9ykw78vxlf06m721x9c4ywdwwh9"; depends=[BiocGenerics Biostrings circlize colorspace ComplexHeatmap GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gridBase IRanges pracma Rsamtools rtracklayer S4Vectors]; }; + goProfiles = derive2 { name="goProfiles"; version="1.56.0"; sha256="0bgp5kbqgp3ckjyvd9xdghi7krnyy80vyqjs5f1kl9lji4psmzzg"; depends=[AnnotationDbi Biobase CompQuadForm GO_db stringr]; }; + goSTAG = derive2 { name="goSTAG"; version="1.18.0"; sha256="168bf6cvca8ham7gy5h7xmm2l6y9l2kl83mgimw8dz08086kq2zq"; depends=[AnnotationDbi biomaRt GO_db memoise]; }; + goTools = derive2 { name="goTools"; version="1.68.0"; sha256="02h0gci72mdxzw5bnkwkg28bnaai63cs4d19h1v6kpcwnvvc2ywg"; depends=[AnnotationDbi GO_db]; }; + goseq = derive2 { name="goseq"; version="1.46.0"; sha256="1psl9mqgx1d21kayaxvrxriw34fq30wnd57q5c1sk3p8iahg73g0"; depends=[AnnotationDbi BiasedUrn BiocGenerics geneLenDataBase GO_db mgcv]; }; + gpart = derive2 { name="gpart"; version="1.12.0"; sha256="10wf7yqgybab96dfpmips7gjvzznvmjda39jlxv3bjyvibc9w5is"; depends=[AnnotationDbi biomaRt data_table GenomicRanges Homo_sapiens igraph IRanges OrganismDbi Rcpp TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + gpls = derive2 { name="gpls"; version="1.66.0"; sha256="00nkqzgv58hfdlmb70is11m90v5ajcs8x9980pb0jh715z1sb5q4"; depends=[]; }; + gprege = derive2 { name="gprege"; version="1.38.0"; sha256="0v9hfx2r17zwn043nqmmx3hx08wcrdx3d371i53a936nhnrdvlmx"; depends=[gptk]; }; + gpuMagic = derive2 { name="gpuMagic"; version="1.10.0"; sha256="01420x69bmxrh3zgzl9dsmb4hh3qbv352zsfr9kxgn8qvax43d5m"; depends=[BiocGenerics Deriv DescTools digest pryr Rcpp stringr]; }; + granulator = derive2 { name="granulator"; version="1.2.0"; sha256="02nfgzq4i0l45chcl62cpcqng5q733cbw4zf16nkf9m0v8si248i"; depends=[cowplot dplyr dtangle e1071 epiR ggplot2 ggplotify limSolve magrittr MASS nnls pheatmap purrr rlang tibble tidyr]; }; + graper = derive2 { name="graper"; version="1.10.0"; sha256="1b3sapisif2qi6i8s9lb7ll91pvp2vkdk9r7fgxq004sjjwfx1ai"; depends=[BH cowplot ggplot2 Matrix matrixStats Rcpp RcppArmadillo]; }; + graph = derive2 { name="graph"; version="1.72.0"; sha256="0x31lz3qimxmng6w99xnqazaj943d94b04nbziad4jfv7c1bc2h0"; depends=[BiocGenerics]; }; + graphite = derive2 { name="graphite"; version="1.40.0"; sha256="0wmdv4j6dinszxwpz2jddshkh1ahbhm2fxh6vhjsk4grw38i1lfr"; depends=[AnnotationDbi checkmate graph httr rappdirs]; }; + groHMM = derive2 { name="groHMM"; version="1.28.0"; sha256="1jcj29df4prknqwbydca1jb9w6njacjhwwk9jp0r5mvb88xrm60s"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS rtracklayer S4Vectors]; }; + gscreend = derive2 { name="gscreend"; version="1.8.0"; sha256="13ivc738inbrd06g84jmd6i4x8lmlc2n5z7z6rh1dym6r0hm77kr"; depends=[BiocParallel fGarch nloptr SummarizedExperiment]; }; + gsean = derive2 { name="gsean"; version="1.14.0"; sha256="1zkyn3mhq6k5wlxxvpsnp17f2aldfhqw6ach2sfii49m9iwxhpjl"; depends=[fgsea PPInfer]; }; + gtrellis = derive2 { name="gtrellis"; version="1.26.0"; sha256="0q2lyb8p1xhqqhw4q1br4r8mwq06mjws8iwbbilkngvs3brbmrzl"; depends=[circlize GenomicRanges GetoptLong IRanges]; }; + gwascat = derive2 { name="gwascat"; version="2.26.0"; sha256="0s67jgk3gnfiyfjwhq4r5xlfnip29blis4fg75kn4qmvjv5j2pxx"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges readr S4Vectors snpStats VariantAnnotation]; }; + gwasurvivr = derive2 { name="gwasurvivr"; version="1.12.0"; sha256="1q31ydns5i8jk4p4731i57f80iwx6qm0r9fka4xd4wdxzk5kps8z"; depends=[GWASTools matrixStats SNPRelate SummarizedExperiment survival VariantAnnotation]; }; + h5vc = derive2 { name="h5vc"; version="2.28.0"; sha256="0i4p122cavihc29javrgg5ywqn1fkg73hp46hfj3v2qmwakihk4w"; depends=[abind BatchJobs BiocParallel Biostrings GenomeInfoDb GenomicRanges ggplot2 gridExtra h5vcData IRanges reshape rhdf5 Rhtslib Rsamtools S4Vectors]; }; + hapFabia = derive2 { name="hapFabia"; version="1.36.0"; sha256="0niwlfy2ljsx1ivdxrpm0f8w75bs03xb2l43dkcm5gclwac2ys1v"; depends=[Biobase fabia]; }; + hca = derive2 { name="hca"; version="1.2.0"; sha256="1q7x62m43gsinx3gqfajy01qll3rf334yzzcl5ijzkxsi2ipyhdx"; depends=[BiocFileCache digest dplyr httr jsonlite readr tibble tidyr]; }; + heatmaps = derive2 { name="heatmaps"; version="1.18.0"; sha256="11fi0kzqx6ihvvwc852xhj34xv4aik0zyv47ad4zbhvb1mvxqv8a"; depends=[BiocGenerics Biostrings EBImage GenomeInfoDb GenomicRanges IRanges KernSmooth Matrix plotrix RColorBrewer]; }; + hiAnnotator = derive2 { name="hiAnnotator"; version="1.28.0"; sha256="1hjgn9gszr38q9syjl9qqw3lml5falp08asn01mq4h1m53akwxxv"; depends=[BSgenome dplyr foreach GenomicRanges ggplot2 iterators rtracklayer scales]; }; + hiReadsProcessor = derive2 { name="hiReadsProcessor"; version="1.30.0"; sha256="02y6gy9h841aag0v88j1g0hw0ckd4zd3agjgvzi9mcmb76zhxz8k"; depends=[BiocGenerics BiocParallel Biostrings dplyr GenomicAlignments GenomicRanges hiAnnotator readxl sonicLength]; }; + hierGWAS = derive2 { name="hierGWAS"; version="1.24.0"; sha256="1mxlk73p4vhnhs5yv5fbxdz3i8d425535r0zwinpi1jhshimr1mw"; depends=[fastcluster fmsb glmnet]; }; + hierinf = derive2 { name="hierinf"; version="1.12.0"; sha256="1qmpxajvclk3m7yl6h5hp4yixgf1v5whiaqh8k7z8g9kz148hi45"; depends=[fmsb glmnet]; }; + hipathia = derive2 { name="hipathia"; version="2.10.0"; sha256="1w14rgl96xssijjgzqdjjs15p33nrqg2wnvv70z5k2i7xzrjwfff"; depends=[AnnotationHub coin DelayedArray igraph limma matrixStats MultiAssayExperiment preprocessCore S4Vectors servr SummarizedExperiment]; }; + hmdbQuery = derive2 { name="hmdbQuery"; version="1.14.0"; sha256="07xvfxpajwchi570739a2ax25bam852q1ifa8w5a02zb32rfbb6l"; depends=[S4Vectors XML]; }; + hopach = derive2 { name="hopach"; version="2.54.0"; sha256="1mj8glhsxkhfbj8mlghplz1dghdr7041r48njzzprx06x94aandi"; depends=[Biobase BiocGenerics cluster]; }; + hpar = derive2 { name="hpar"; version="1.36.0"; sha256="1inajapdhjxg0vwhsdnhfq22h3fv7ad7m1lv58y5v41p59av1w76"; depends=[]; }; + hummingbird = derive2 { name="hummingbird"; version="1.4.0"; sha256="1cp3agr0nzsqgs4s253vwdbzw5fkjdkas03svy8iwlzncgd000j5"; depends=[GenomicRanges IRanges Rcpp SummarizedExperiment]; }; + hypeR = derive2 { name="hypeR"; version="1.10.0"; sha256="12rkbcb75djwd1dd4677k7cw2wxpn9p64r735lbf3pkqmmgqn22p"; depends=[dplyr ggforce ggplot2 htmltools httr igraph kableExtra magrittr msigdbr openxlsx purrr R6 reactable reshape2 rlang rmarkdown scales shiny stringr visNetwork]; }; + hyperdraw = derive2 { name="hyperdraw"; version="1.46.0"; sha256="1lkiqrk01hshms9ghsfynxwj69zr3463r3rg8rn7hkwn3bj8xyzj"; depends=[graph hypergraph Rgraphviz]; }; + hypergraph = derive2 { name="hypergraph"; version="1.66.0"; sha256="0xnyl9qh5p32ifvzkcl5g4a38zbnwykqzrp8gwz076a0ksiqqdxf"; depends=[graph]; }; + iASeq = derive2 { name="iASeq"; version="1.38.0"; sha256="198rhqv0rdi3hiw9didfd6q25a15rk6nazf8xp2rhindv2frdvi3"; depends=[]; }; + iBBiG = derive2 { name="iBBiG"; version="1.38.0"; sha256="10z3vb14xyidaz4spmsg3c9wpa3gzj8c3kwh6jvqmjxgpy7kq2d3"; depends=[ade4 biclust xtable]; }; + iBMQ = derive2 { name="iBMQ"; version="1.34.0"; sha256="1b15xiv8g8p2qy3dhg80ggppri9v7hawjz2kaj8an231vgl7j546"; depends=[Biobase ggplot2]; }; + iCARE = derive2 { name="iCARE"; version="1.22.0"; sha256="17x6kcrl2wrnj7dmvbyw3cflhv07hymyy78mj0476x0w7aiihwjw"; depends=[gtools Hmisc plotrix]; }; + iCNV = derive2 { name="iCNV"; version="1.14.0"; sha256="1hhmnlq3sliz253badrcwbkdr384pyl2jb3s0dkp585gngz143xg"; depends=[CODEX data_table dplyr fields ggplot2 rlang tidyr truncnorm]; }; + iCOBRA = derive2 { name="iCOBRA"; version="1.22.0"; sha256="0qg32g1rfvh6mx8wny1lrva9vc347288hzml7yb4rnrsx1hggkpa"; depends=[dplyr DT ggplot2 limma reshape2 ROCR scales shiny shinyBS shinydashboard UpSetR]; }; + iCheck = derive2 { name="iCheck"; version="1.24.0"; sha256="06nfnj5267j9ynhz8hkzvada1d1yk62zqynif5xm6n7m9sk9fsl5"; depends=[affy Biobase GeneSelectMMD gplots limma lmtest lumi MASS preprocessCore randomForest rgl scatterplot3d]; }; + iChip = derive2 { name="iChip"; version="1.48.0"; sha256="1zlwkw2qva32v515pziif6gdik5a5hqs53f3im12fzn3wgpcxvh0"; depends=[limma]; }; + iClusterPlus = derive2 { name="iClusterPlus"; version="1.30.0"; sha256="0w6r2clk8wdnnnjmq3cspmxiq1c8vwprd66xmdrhcqzbjkpkdw2b"; depends=[]; }; + iGC = derive2 { name="iGC"; version="1.24.0"; sha256="1jsmm5ldrq4vmcg3k3gd39j2fcbyzawg0p6jwz084z1v79z71m4w"; depends=[data_table plyr]; }; + iPAC = derive2 { name="iPAC"; version="1.38.0"; sha256="1yvjm18ybwa6b1ssaf1m3vas3h8jmmd6ycqdivf7lp2mdl3if4hw"; depends=[Biostrings gdata multtest scatterplot3d]; }; + iPath = derive2 { name="iPath"; version="1.0.0"; sha256="0q82hg7xgb8axsq8hajr22b83i8gsfrsd60qxaa4rrhph0cv7vlf"; depends=[BiocParallel ggplot2 ggpubr matrixStats mclust Rcpp RcppArmadillo survival survminer]; }; + iSEE = derive2 { name="iSEE"; version="2.6.0"; sha256="13x4xiy1qy2bz6yg06gx4lqly5ql6gbkbflvck1i1xws5kdc62z3"; depends=[BiocGenerics circlize colourpicker ComplexHeatmap DT ggplot2 ggrepel igraph mgcv rintrojs S4Vectors shiny shinyAce shinydashboard shinyjs shinyWidgets SingleCellExperiment SummarizedExperiment vipor viridisLite]; }; + iSEEu = derive2 { name="iSEEu"; version="1.6.0"; sha256="1d2ksq8343wf6acj8yznzcrv6bw1dw0fljzr8g3164zhl6zbhm5j"; depends=[colourpicker DT ggplot2 IRanges iSEE S4Vectors shiny shinyAce SingleCellExperiment SummarizedExperiment]; }; + iSeq = derive2 { name="iSeq"; version="1.46.0"; sha256="0q4aj9w3lywlrj74ik0hmmm5pczl4wlk6h1c3ds6lj2l8vr6ycmc"; depends=[]; }; + iasva = derive2 { name="iasva"; version="1.12.0"; sha256="122zgn141lpgnybqxy3ml33nbi9hm1r87kyr0nl1i3mqb0gd9dvl"; depends=[BiocParallel cluster irlba SummarizedExperiment]; }; + ibh = derive2 { name="ibh"; version="1.42.0"; sha256="1h1zqcwsmjk590gcwkzpqj0c9x2i85amg3q98a9qpirw9alr1vc8"; depends=[simpIntLists]; }; + icetea = derive2 { name="icetea"; version="1.12.0"; sha256="0iy9ki661774334d5wpibc8k8ri4d6aw4y3a15yik5fdgxg1g2z1"; depends=[BiocGenerics BiocParallel Biostrings csaw DESeq2 edgeR GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges limma Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment TxDb_Dmelanogaster_UCSC_dm6_ensGene VariantAnnotation]; }; + ideal = derive2 { name="ideal"; version="1.18.0"; sha256="01fix9fwcm1mglpggrkgagy80fg6yh772k4a1m0i5pvm923wcggv"; depends=[AnnotationDbi base64enc BiocParallel DESeq2 dplyr DT GenomicRanges ggplot2 ggrepel GO_db goseq GOstats gplots heatmaply IHW IRanges knitr limma pcaExplorer pheatmap plotly rentrez rintrojs rlang rmarkdown S4Vectors shiny shinyAce shinyBS shinydashboard stringr SummarizedExperiment topGO UpSetR]; }; + idiogram = derive2 { name="idiogram"; version="1.70.0"; sha256="1qpip00mjdmc5vk6ab830ma6p4i0rgz8zih452jsqcfjpgc7q4p4"; depends=[annotate Biobase plotrix]; }; + idpr = derive2 { name="idpr"; version="1.4.0"; sha256="0zakv6rmi3n5b1yd232vmm6qzlmnqkjxqd69fj5blg7lr1jyknjn"; depends=[Biostrings dplyr ggplot2 jsonlite magrittr plyr rlang]; }; + idr2d = derive2 { name="idr2d"; version="1.8.0"; sha256="0vkqdbifvidhamwav8k2h7kw8anprs3v8yl97kg593nw4564ii3b"; depends=[dplyr futile_logger GenomeInfoDb GenomicRanges ggplot2 idr IRanges magrittr reticulate scales stringr]; }; + igvR = derive2 { name="igvR"; version="1.14.0"; sha256="0i55zx2y92cl22d4x4h4gjdaknyxidsxqz22fpgyfd5abryx5ni3"; depends=[BiocGenerics BrowserViz GenomicAlignments GenomicRanges httpuv MotifDb RColorBrewer rtracklayer seqLogo VariantAnnotation]; }; + illuminaio = derive2 { name="illuminaio"; version="0.36.0"; sha256="0icsp610am5vrd8x2h9c450phn4vl9c5wnzqmkix5hkqzrykk34m"; depends=[base64]; }; + imageHTS = derive2 { name="imageHTS"; version="1.44.0"; sha256="1dg4p6qdhyhqdnpf3gaa1nlnw7d01yxhbhsbaiqnw9q9aprgi8hk"; depends=[Biobase cellHTS2 e1071 EBImage hwriter vsn]; }; + imcRtools = derive2 { name="imcRtools"; version="1.0.0"; sha256="0c0qq3kxslj925zr7hjqigq4d67h2byazjby1dv1b5l3s5swl5gh"; depends=[abind BiocNeighbors BiocParallel concaveman cytomapper data_table dplyr DT EBImage ggplot2 ggraph igraph magrittr pheatmap readr RTriangle S4Vectors scuttle sf SingleCellExperiment SpatialExperiment stringr SummarizedExperiment tidygraph viridis vroom]; }; + immunoClust = derive2 { name="immunoClust"; version="1.26.0"; sha256="0vqn8455spray252b6kg771mwz4b6f51d4k7srg2i3rn7kyp7r38"; depends=[flowCore lattice]; }; + immunotation = derive2 { name="immunotation"; version="1.2.0"; sha256="1rdmy46grqjf8ydgq0pgaja3jv4jna0yffw7fmiirfh96m2qvb00"; depends=[curl ggplot2 maps ontologyIndex readr rlang rvest stringr tidyr xml2]; }; + impute = derive2 { name="impute"; version="1.68.0"; sha256="0k6dil8ljgp5qr87m7hxli4igb36fbxiwczaqc5pi8mlfh70fqj5"; depends=[]; }; + infercnv = derive2 { name="infercnv"; version="1.10.0"; sha256="09yipqak5f5v8sf6kdnwl7v3xiaf15lpg6dmkw51inbi2vg23g5j"; depends=[ape argparse BiocGenerics caTools coda coin digest doParallel dplyr edgeR fastcluster fitdistrplus foreach futile_logger future ggplot2 gplots gridExtra HiddenMarkov leiden Matrix phyclust RANN RColorBrewer reshape rjags SingleCellExperiment SummarizedExperiment tidyr]; }; + infinityFlow = derive2 { name="infinityFlow"; version="1.4.0"; sha256="1bqkw5z6sxmj10wxzqaszjl5fw4rvfkr9j0w7qvprqyc3335z6a9"; depends=[Biobase flowCore generics gtools matlab pbapply png raster uwot xgboost]; }; + intansv = derive2 { name="intansv"; version="1.34.0"; sha256="1y4s2vpaw0kmzz5qn52yq2dzzivdi5scmxh3w7garbispc6m0v1g"; depends=[BiocGenerics GenomicRanges ggbio IRanges plyr]; }; + interacCircos = derive2 { name="interacCircos"; version="1.4.0"; sha256="1jn3373sj9l5ypc21niv81rfwa2hfmp1g28ab9xx8hdv18rsl8d6"; depends=[htmlwidgets plyr RColorBrewer]; }; + interactiveDisplay = derive2 { name="interactiveDisplay"; version="1.32.0"; sha256="06jwcl34x6abg3s71w8y1jla6l0wd2jp72wb46kqbw6ry0wqj1yy"; depends=[AnnotationDbi BiocGenerics Category ggplot2 gridSVG interactiveDisplayBase plyr RColorBrewer reshape2 shiny XML]; }; + interactiveDisplayBase = derive2 { name="interactiveDisplayBase"; version="1.32.0"; sha256="1pi887192k1jifb4k3pf2jn5hcl1xmmy6vwl22r9njsprdyb3kab"; depends=[BiocGenerics DT shiny]; }; + inveRsion = derive2 { name="inveRsion"; version="1.42.0"; sha256="0205fmv174x23gl5ka8k5j2x1lrwqc31zx7p0ngr9877kbi5idrj"; depends=[haplo_stats]; }; + ipdDb = derive2 { name="ipdDb"; version="1.12.0"; sha256="0q4lrhj3l5ayfx1bba9176r2wybpn710yxxrcprgr87h95wqac8v"; depends=[AnnotationDbi AnnotationHub assertthat Biostrings DBI GenomicRanges IRanges RSQLite]; }; + isobar = derive2 { name="isobar"; version="1.40.0"; sha256="0njl7b0k5hnwlj060ry6a8zjw035c21d107n0j2fyxg8nx4icqsx"; depends=[Biobase biomaRt distr ggplot2 plyr]; }; + isomiRs = derive2 { name="isomiRs"; version="1.22.0"; sha256="16af3cqdc283bhz1b365hiq7xmkgamggdw8bgsvpqifzssqs2jj1"; depends=[AnnotationDbi assertive_sets Biobase BiocGenerics broom cluster cowplot DEGreport DESeq2 DiscriMiner dplyr GenomicRanges GGally ggplot2 gplots gridExtra gtools IRanges limma RColorBrewer readr reshape rlang S4Vectors stringr SummarizedExperiment tibble tidyr]; }; + iterClust = derive2 { name="iterClust"; version="1.16.0"; sha256="0ggr9h3kyyjnfiqwk4w22icg8fg5bln1vygk1ip0badcxk2b6gyw"; depends=[Biobase cluster]; }; + iterativeBMA = derive2 { name="iterativeBMA"; version="1.52.0"; sha256="1s86cq9c5a330cpxjpxgj1ibphmfsrxp1dn2gp7n50qkp2pyjsqa"; depends=[Biobase BMA leaps]; }; + iterativeBMAsurv = derive2 { name="iterativeBMAsurv"; version="1.52.0"; sha256="0jrjyrg2kfmgiybwdglrbfvfziy8i6jnkzb2ddr8z0670bmv8wxw"; depends=[BMA leaps survival]; }; + iteremoval = derive2 { name="iteremoval"; version="1.14.0"; sha256="15ls501y27lc9iyvz9fmk8w09512bg7cxl763amck1f6r3qnm8hl"; depends=[GenomicRanges ggplot2 magrittr SummarizedExperiment]; }; + ivygapSE = derive2 { name="ivygapSE"; version="1.16.0"; sha256="1a35z2ndvdqj84g5327cpz3s6aqn953ycwgglcqxpaabf2jh18sq"; depends=[ggplot2 hwriter plotly S4Vectors shiny SummarizedExperiment survival survminer UpSetR]; }; + karyoploteR = derive2 { name="karyoploteR"; version="1.20.0"; sha256="0x3mld9q55r2fy452wxq5sjzmms10zmpkzs71c3w1fdli5hwszdq"; depends=[AnnotationDbi bamsignals bezier biovizBase digest GenomeInfoDb GenomicFeatures GenomicRanges IRanges memoise regioneR Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; + kebabs = derive2 { name="kebabs"; version="1.28.0"; sha256="0454drbsl9fz0s7k00qd56wj0lwvwmyzn4nlsww7nfgszw95ac4q"; depends=[apcluster Biostrings e1071 IRanges kernlab LiblineaR Matrix Rcpp S4Vectors XVector]; }; + keggorthology = derive2 { name="keggorthology"; version="2.46.0"; sha256="1rckw5yg9swf86cmh4nmrzb37w8m023c7q0pis1nqbcx9lgdgiw5"; depends=[AnnotationDbi DBI graph hgu95av2_db]; }; + kissDE = derive2 { name="kissDE"; version="1.14.0"; sha256="1k6aljlhj3k06a95imnna1jmx1xwvnbc72sbp2jqn2hc69pkyi2j"; depends=[aod Biobase DESeq2 doParallel DSS foreach ggplot2 gplots matrixStats]; }; + lapmix = derive2 { name="lapmix"; version="1.60.0"; sha256="17niykbr8c388qbvjix2hc3zmpa5335bhmwsvnna4qa9v9fi9ln2"; depends=[Biobase]; }; + ldblock = derive2 { name="ldblock"; version="1.24.0"; sha256="1v9b372d5hpwwik6956mfwc9b3bibygz042i4nydsklnbwm5vcmg"; depends=[BiocGenerics EnsDb_Hsapiens_v75 ensembldb GenomeInfoDb GenomicFiles httr Matrix Rsamtools snpStats VariantAnnotation]; }; + lefser = derive2 { name="lefser"; version="1.4.0"; sha256="0hf1il7h8dsqhdjxz88alyn4b5r95189gxs88ca9w1dcg7nx8xfv"; depends=[coin ggplot2 MASS SummarizedExperiment]; }; + les = derive2 { name="les"; version="1.44.0"; sha256="08kahiq7j7xwr9hpynzcnbr3jchdd83iacywrnb03plz5jx22q9n"; depends=[boot fdrtool gplots RColorBrewer]; }; + levi = derive2 { name="levi"; version="1.12.0"; sha256="0mn8hcbld16qcdmb35hamg9p1rs7264k25s1bhw2ipcipkjv6fh3"; depends=[colorspace dplyr DT ggplot2 httr igraph knitr RColorBrewer Rcpp reshape2 rmarkdown shiny shinydashboard shinyjs testthat xml2]; }; + lfa = derive2 { name="lfa"; version="1.24.0"; sha256="02b90xjb2lfm86hbsdrvzpv20pijnq78ibz4dwjzqd9v4xhia3wr"; depends=[corpcor]; }; + limma = derive2 { name="limma"; version="3.50.0"; sha256="05ypmax1s6y1nz42bxn61wxhzzw6185q633crzpdcbbz3dz4vgvy"; depends=[]; }; + limmaGUI = derive2 { name="limmaGUI"; version="1.70.0"; sha256="0g4bp8ih848kh907ykmn6q1nzwabg5ifqb7123m87wdhrw224xjp"; depends=[limma R2HTML tkrplot xtable]; }; + lionessR = derive2 { name="lionessR"; version="1.8.0"; sha256="0n4ky9g2a4n5wisvkj9afkvaqdq4yxfabnx26vrjy8g34dg5dz3l"; depends=[S4Vectors SummarizedExperiment]; }; + lipidr = derive2 { name="lipidr"; version="2.8.0"; sha256="0w300ac15ra2yl3lz05wdg4vy2skxqdmnwljjcldgacgdfs012zb"; depends=[data_table dplyr fgsea forcats ggplot2 imputeLCMD limma magrittr rlang ropls S4Vectors SummarizedExperiment tidyr]; }; + lisaClust = derive2 { name="lisaClust"; version="1.2.0"; sha256="0n3vwawlmybjbgvgb66pc0if63dn7mqhk74jpskqzv7c6f5nbvdv"; depends=[BiocGenerics BiocParallel class concaveman data_table dplyr ggplot2 purrr S4Vectors spatstat_core spatstat_geom spicyR tidyr]; }; + lmdme = derive2 { name="lmdme"; version="1.36.0"; sha256="0wi1lsaix6dgmj69kpm8rg5jbhv2a7r7a4n6zz1zg0q288pzs34s"; depends=[limma pls stemHypoxia]; }; + loci2path = derive2 { name="loci2path"; version="1.14.0"; sha256="18wzbsa22ix5q6icr2mmcfijrlv4dg222icyixlpzrcbhc8r42sq"; depends=[BiocParallel data_table GenomicRanges pheatmap RColorBrewer S4Vectors wordcloud]; }; + logicFS = derive2 { name="logicFS"; version="2.14.0"; sha256="1zcpili2syp0xhggy6pq6xa3w964jird0h3wb7i0r3427wd76mzj"; depends=[LogicReg mcbiopi survival]; }; + logitT = derive2 { name="logitT"; version="1.52.0"; sha256="0al9spb7i5g86x0ciap0y9n2i2hj33s9b6201wp0qq869aqz8g28"; depends=[affy]; }; + lpNet = derive2 { name="lpNet"; version="2.26.0"; sha256="0j1il1li6q82zy2f2mqprhr8pmk1xcs06jy55ddpvmxz8146s3sb"; depends=[lpSolve]; }; + lpsymphony = derive2 { name="lpsymphony"; version="1.22.0"; sha256="1bv28b1fgcazv6j0xw4nn6wljs37qnkyahqy7anrwissdpryhjfs"; depends=[]; }; + lumi = derive2 { name="lumi"; version="2.46.0"; sha256="0v33p66vn4alhx2il9wwdvc9sqvgasgj0s2gk85gjc76ad0017in"; depends=[affy annotate AnnotationDbi Biobase DBI GenomicFeatures GenomicRanges KernSmooth lattice MASS methylumi mgcv nleqslv preprocessCore RSQLite]; }; + m6Aboost = derive2 { name="m6Aboost"; version="1.0.0"; sha256="1513jrvvqf1b25dl40y991h21q1ilmqhg8izji1b0q0n3r1i121p"; depends=[adabag Biostrings BSgenome dplyr ExperimentHub GenomicRanges IRanges rtracklayer S4Vectors]; }; + mAPKL = derive2 { name="mAPKL"; version="1.24.0"; sha256="0l6r333hqgbk7b907j89g5q2ixx1zgv9hq39lixbv9bgcd99m9c6"; depends=[AnnotationDbi apcluster Biobase clusterSim e1071 igraph limma multtest parmigene reactome_db]; }; + mBPCR = derive2 { name="mBPCR"; version="1.48.0"; sha256="0i1jrlj0xjkl2giw6955xyqfmcm8vscv8znpa0v0rkw06iilqmr2"; depends=[Biobase GWASTools oligoClasses]; }; + mCSEA = derive2 { name="mCSEA"; version="1.14.0"; sha256="1k574mm9k23gqmszds9s4mg1nmsrwh3c7r6adj0746120rl6m1dr"; depends=[biomaRt fgsea GenomicFeatures GenomicRanges ggplot2 Gviz Homo_sapiens IRanges limma mCSEAdata S4Vectors SummarizedExperiment]; }; + maCorrPlot = derive2 { name="maCorrPlot"; version="1.64.0"; sha256="1pgn23npk65g8cc80gj5cp6k41xzqc7pnnx388vmkhxs3biy2l6v"; depends=[lattice]; }; + maPredictDSC = derive2 { name="maPredictDSC"; version="1.32.0"; sha256="1gax3v24z4xlzdnghwxfhi8xr6y6hz2d66597cpgl44z734i2252"; depends=[affy AnnotationDbi caret class e1071 gcrma hgu133plus2_db limma LungCancerACvsSCCGEO MASS ROC ROCR]; }; + maSigPro = derive2 { name="maSigPro"; version="1.66.0"; sha256="02s2fpmkpqzr8xsqw93hgi8wrnx8klh92j1cyf5xiqqkl3581apb"; depends=[Biobase MASS mclust venn]; }; + maanova = derive2 { name="maanova"; version="1.64.0"; sha256="1bifi7fzjhc00j8ckifh8vs4l3vxmqfh5kpwd1qgcg8q25hpx7gw"; depends=[Biobase]; }; + macat = derive2 { name="macat"; version="1.68.0"; sha256="17jxgq0cblw77anx4kd3gnj1yjffid1iw2yg8kw2wvslzwyrnyn9"; depends=[annotate Biobase]; }; + made4 = derive2 { name="made4"; version="1.68.0"; sha256="0jnzxd9dk3ihbjpybb9f43iww1xsz8l85ivav9a4s8zwc8nbwn8c"; depends=[ade4 Biobase gplots RColorBrewer scatterplot3d SummarizedExperiment]; }; + maftools = derive2 { name="maftools"; version="2.10.0"; sha256="1s8w3xwwigz803l81bs9cb2dbvvw5r9z8jjcav1rmh9wm8909nfd"; depends=[data_table RColorBrewer Rhtslib survival zlibbioc]; }; + maigesPack = derive2 { name="maigesPack"; version="1.58.0"; sha256="19xixj4mk4vgh1rvxgnscyz6mx17nyqyhj64pixhz80mwa1w5vdd"; depends=[convert graph limma marray]; }; + makecdfenv = derive2 { name="makecdfenv"; version="1.70.0"; sha256="1v4x4x6x65sjdl194adhsz3l2lgcri9mmwix6dvcvd0pb321jpwn"; depends=[affy affyio Biobase zlibbioc]; }; + mapscape = derive2 { name="mapscape"; version="1.18.0"; sha256="0cim9svg45glfyli0liphhix2k0864fr0kl9kafv4zigbmfv83jy"; depends=[base64enc htmlwidgets jsonlite stringr]; }; + marr = derive2 { name="marr"; version="1.4.0"; sha256="00wq5s68fxp9cdc77frzk6pyim89yk3gk9786g6szx2acbaqas0j"; depends=[dplyr ggplot2 magrittr Rcpp rlang S4Vectors SummarizedExperiment]; }; + marray = derive2 { name="marray"; version="1.72.0"; sha256="1la805y8j522vpiazm1z6wpq4ibia9bib5fpiia5mxmpzmqg6gzz"; depends=[limma]; }; + martini = derive2 { name="martini"; version="1.14.0"; sha256="0ml5b38ivszn5qyqfi5c8xs43z05xiqhgybqaqxiasfl7rv18ikd"; depends=[igraph Matrix Rcpp RcppEigen snpStats]; }; + maser = derive2 { name="maser"; version="1.12.0"; sha256="1yb0c4jyxanqkzrznqzddhdm0lv3m991irkk0by11sssbqbmpsnd"; depends=[BiocGenerics data_table dplyr DT GenomeInfoDb GenomicRanges ggplot2 Gviz IRanges reshape2 rtracklayer]; }; + maskBAD = derive2 { name="maskBAD"; version="1.38.0"; sha256="1fkzisfa0bazg0n41g9ixzh5xaw34wdkb56dx0ljg8n1dkq28jbn"; depends=[affy gcrma]; }; + massiR = derive2 { name="massiR"; version="1.30.0"; sha256="142lidx7j4n1sfizwwlschjc4di2cqz5v1q9p4v4i1xndpdxdwya"; depends=[Biobase cluster diptest gplots]; }; + matchBox = derive2 { name="matchBox"; version="1.36.0"; sha256="13i22m51g72jahxpxnfjr1jxbphiihy7yhwhm0ywxra9vmabpknp"; depends=[]; }; + matter = derive2 { name="matter"; version="1.20.0"; sha256="0m5rh4v7nsy8ijvz2amalihp5vzblpyhmkamy5zk66rwk17w304h"; depends=[biglm BiocGenerics BiocParallel digest irlba Matrix ProtGenerics]; }; + mbkmeans = derive2 { name="mbkmeans"; version="1.10.0"; sha256="03hpj218s8fynmk1s50s0rinhsljikxdrff06yc8ysbyc6hyfb4k"; depends=[beachmat benchmarkme BiocParallel ClusterR DelayedArray Matrix Rcpp RcppArmadillo Rhdf5lib S4Vectors SingleCellExperiment SummarizedExperiment]; }; + mdp = derive2 { name="mdp"; version="1.14.0"; sha256="0q721w901pxyjygz63d7a39h762ngqk8dqhn0grad82n90bywx0m"; depends=[ggplot2 gridExtra]; }; + mdqc = derive2 { name="mdqc"; version="1.56.0"; sha256="06yvmgn8qhh1lmm338sdp50jfw7v148sn2mwmcps3l56vh4bci74"; depends=[cluster MASS]; }; + megadepth = derive2 { name="megadepth"; version="1.4.0"; sha256="0mg7n3990qv65rg624473ssccka0yjpgc20glrdc5saci891j44r"; depends=[cmdfun dplyr fs GenomicRanges magrittr readr xfun]; }; + memes = derive2 { name="memes"; version="1.2.0"; sha256="0ry30wxp38iwbr70qmr5nj4s0c41j0srdfz1x08c9xnh948a67m8"; depends=[Biostrings cmdfun dplyr GenomicRanges ggplot2 ggseqlogo magrittr matrixStats patchwork processx purrr readr rlang tibble tidyr universalmotif usethis xml2]; }; + meshes = derive2 { name="meshes"; version="1.20.0"; sha256="1mwdrpqj7vphb30ii958hglzr0h4z7nv99v5sqvgjql76m8z0hcg"; depends=[AnnotationDbi AnnotationHub DOSE enrichplot GOSemSim MeSHDbi yulab_utils]; }; + meshr = derive2 { name="meshr"; version="2.0.0"; sha256="02c5lp08r5yvg5zz1lmxla8av9gp5gpgr6sc8jq715yf9w4s4xjl"; depends=[BiocGenerics BiocStyle Category fdrtool knitr markdown MeSHDbi rmarkdown RSQLite S4Vectors]; }; + messina = derive2 { name="messina"; version="1.30.0"; sha256="1k00l4qq5jn6lkna7ch9dyycrgfs446hajwki836hm1bvdfsz2q9"; depends=[foreach ggplot2 plyr Rcpp survival]; }; + metaCCA = derive2 { name="metaCCA"; version="1.22.0"; sha256="0bdnd895x3z0p0xihhgs9jcrrm8zc3a05w7m1rif2nlr8r07aixf"; depends=[]; }; + metaMS = derive2 { name="metaMS"; version="1.30.0"; sha256="126brvip0h69g7ak1324vi2kflppccj7v0rqfgcb4pcb6f5fr01q"; depends=[BiocGenerics CAMERA Matrix robustbase xcms]; }; + metaSeq = derive2 { name="metaSeq"; version="1.34.0"; sha256="09js59k0kzwrl8siy5dmr1wmim3klynx1yq8m0wajd0zj2zs5yyr"; depends=[NOISeq Rcpp snow]; }; + metabCombiner = derive2 { name="metabCombiner"; version="1.4.0"; sha256="0sx39fd8z5y00gb8471vl6n9gz8kz6yx23w3ph8slycnkr31pxag"; depends=[caret dplyr matrixStats mgcv rlang S4Vectors tidyr]; }; + metabolomicsWorkbenchR = derive2 { name="metabolomicsWorkbenchR"; version="1.4.0"; sha256="01d792dcy53fbczv9c6yw2wd54r0lk1flnz93b37kccnnpfcdgi0"; depends=[data_table httr jsonlite MultiAssayExperiment struct SummarizedExperiment]; }; + metabomxtr = derive2 { name="metabomxtr"; version="1.28.0"; sha256="18672j5k2yhilsm509qvmxrnpswx0q1vgkpa418pbxhl1kz72pj0"; depends=[Biobase BiocParallel Formula ggplot2 multtest optimx plyr]; }; + metagene = derive2 { name="metagene"; version="2.26.0"; sha256="1x6prcw2rqb179w9fb3irzijh8ng6flmza8ydnmhj992s8lq7iv7"; depends=[BiocParallel data_table EnsDb_Hsapiens_v86 ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gplots IRanges magrittr matrixStats muStat purrr R6 Rsamtools rtracklayer stringr]; }; + metagene2 = derive2 { name="metagene2"; version="1.10.0"; sha256="0k0aysnwq08c699frbsyr8rys2djgi0crw804qvl5fl956fnpczj"; depends=[BiocParallel data_table dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges magrittr purrr R6 reshape2 Rsamtools rtracklayer]; }; + metagenomeSeq = derive2 { name="metagenomeSeq"; version="1.36.0"; sha256="0fyvy40jibaz5y4br49547h559dh4kk0vdysh9hfg1hi1q269ck9"; depends=[Biobase foreach glmnet gplots limma Matrix matrixStats RColorBrewer Wrench]; }; + metahdep = derive2 { name="metahdep"; version="1.52.0"; sha256="1pwij0xjrrcvp3c24ia78nsk1lhgxwr16md55h9292vh0pmh4d8w"; depends=[]; }; + metapod = derive2 { name="metapod"; version="1.2.0"; sha256="1s8dfzpgbpxbn3jvx891gvw3jyn43nlxb73yv1vjn85brk9zbqpk"; depends=[Rcpp]; }; + metapone = derive2 { name="metapone"; version="1.0.0"; sha256="0mbbmjv3kwfn78ssar0g2cnajgflxx4gay9m668mryxirnnyvvsr"; depends=[BiocParallel fields markdown]; }; + metaseqR2 = derive2 { name="metaseqR2"; version="1.6.0"; sha256="122j7466kww6z9vcxnmzy9a42z2iaxc0bl48jx46kikbs5i9in54"; depends=[ABSSeq baySeq Biobase BiocGenerics BiocParallel biomaRt Biostrings corrplot DESeq2 DSS DT EDASeq edgeR genefilter GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gplots harmonicmeanp heatmaply htmltools httr IRanges jsonlite lattice limma locfit log4r magrittr MASS Matrix NBPSeq pander qvalue rmarkdown rmdformats Rsamtools RSQLite rtracklayer S4Vectors stringr SummarizedExperiment survcomp VennDiagram vsn yaml zoo]; }; + metavizr = derive2 { name="metavizr"; version="1.18.0"; sha256="1grsk7aw1k9j9qgl033ca7azfifjhv07grpkjd57lpbasjchf9m2"; depends=[Biobase data_table digest epivizr epivizrData epivizrServer epivizrStandalone GenomeInfoDb httr metagenomeSeq phyloseq vegan]; }; + methInheritSim = derive2 { name="methInheritSim"; version="1.16.0"; sha256="0ig4a0v5j2fdc380m4c97477yhwzhi4c8h6cybam12vnl6l8mfr9"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges methylKit msm S4Vectors]; }; + methimpute = derive2 { name="methimpute"; version="1.16.0"; sha256="0dkq86962hrpn4i038bl2j8sjnh0qyfv7x81p5ldrfm55l393wyy"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges ggplot2 IRanges minpack_lm Rcpp reshape2]; }; + methrix = derive2 { name="methrix"; version="1.8.0"; sha256="0k1kgz05hv5wqarp12nkwif3g8bhyb2zqyv3l78cdi1gg7smbn3j"; depends=[BSgenome data_table DelayedArray DelayedMatrixStats GenomicRanges ggplot2 HDF5Array IRanges matrixStats rtracklayer SummarizedExperiment]; }; + methylCC = derive2 { name="methylCC"; version="1.8.0"; sha256="18mk945nzj591l0cxj1qfl58ifmhka89pf08dp3lc84n5k2ymjdf"; depends=[Biobase bsseq bumphunter dplyr FlowSorted_Blood_450k genefilter GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IRanges magrittr minfi plyranges quadprog S4Vectors]; }; + methylGSA = derive2 { name="methylGSA"; version="1.12.0"; sha256="1cwm1cn77l0gq6a53rd0zhwqp708v4cl9navirxw4pq4mba8nziq"; depends=[AnnotationDbi BiocParallel clusterProfiler ggplot2 GO_db IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 missMethyl org_Hs_eg_db reactome_db RobustRankAggreg shiny stringr]; }; + methylInheritance = derive2 { name="methylInheritance"; version="1.18.0"; sha256="1vz2aww1523h7lrac04sq4p521bbhw4l1cx4j20ijjddd9v5kr45"; depends=[BiocParallel GenomicRanges ggplot2 gridExtra IRanges methylKit rebus S4Vectors]; }; + methylKit = derive2 { name="methylKit"; version="1.20.0"; sha256="02px46h2ynprss7kwll3i0jz0clrdg0bys70jacd432xw34nm2sx"; depends=[data_table emdbook fastseg GenomeInfoDb GenomicRanges gtools IRanges KernSmooth limma mclust mgcv qvalue R_utils Rcpp Rhtslib Rsamtools rtracklayer S4Vectors zlibbioc]; }; + methylMnM = derive2 { name="methylMnM"; version="1.32.0"; sha256="1l87588frvl2cs9gf45axq90xhz94xx825zhm1w0gg7pjxgkwdmb"; depends=[edgeR statmod]; }; + methylPipe = derive2 { name="methylPipe"; version="1.27.0"; sha256="0z2md9n1flzfsgsbzwffn4q6yfcjyj03bg1vi4phcknigbhg1viy"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicRanges gplots Gviz IRanges marray Rsamtools S4Vectors SummarizedExperiment]; }; + methylSig = derive2 { name="methylSig"; version="1.6.0"; sha256="0kp1ckxbidwlbv4690g236qhbh9rzjglx8gpmkihq67hfci7537v"; depends=[bsseq DelayedArray DelayedMatrixStats DSS GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + methylclock = derive2 { name="methylclock"; version="1.0.0"; sha256="0zx839894d1wp9jd0ksdhikzyww12caqcm18n6yca012d43qkija"; depends=[Biobase devtools dplyr dynamicTreeCut ExperimentHub ggplot2 ggpmisc ggpubr impute methylclockData minfi PerformanceAnalytics preprocessCore quadprog Rcpp RPMM tibble tidyr tidyverse]; }; + methylscaper = derive2 { name="methylscaper"; version="1.2.0"; sha256="0ygkx6fs8rjbqp4ry3am7vd3jsqx3nac1z1hdiib2pvgr7b6h1r7"; depends=[BiocParallel Biostrings data_table Rfast seqinr seriation shiny shinyFiles shinyjs SummarizedExperiment]; }; + methylumi = derive2 { name="methylumi"; version="2.40.1"; sha256="1lfcsv8k9c4ndfwlbdk3vd7fq58100bfijyxklna41zf8m8kkkka"; depends=[annotate AnnotationDbi Biobase BiocGenerics FDb_InfiniumMethylation_hg19 genefilter GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 illuminaio IRanges lattice matrixStats minfi reshape2 S4Vectors scales SummarizedExperiment]; }; + mfa = derive2 { name="mfa"; version="1.16.0"; sha256="1a672zd33bdg0pa490pxrr0jp8vnmnkngb3x12jsqqq56p4dzpjb"; depends=[Biobase coda dplyr ggmcmc ggplot2 magrittr MCMCglmm MCMCpack Rcpp tibble]; }; + mgsa = derive2 { name="mgsa"; version="1.42.0"; sha256="02yc49w9yccvhq6iwf09kfb7hkq35aswxymcrkf4j54q7mqhiflc"; depends=[gplots]; }; + miQC = derive2 { name="miQC"; version="1.2.0"; sha256="1a9f6w3j3w2wwqgl2hnl2jrrzycnzwhjv2cds2xk6lakz6x7h9hd"; depends=[flexmix ggplot2 SingleCellExperiment]; }; + miRBaseConverter = derive2 { name="miRBaseConverter"; version="1.18.0"; sha256="07snnvgnmxj0w0f9400vcqgchbfvhmqlh3wrk4wqacqc0ldcxb7a"; depends=[]; }; + miRLAB = derive2 { name="miRLAB"; version="1.24.0"; sha256="01fhzkhr59n6ph2av52vwnyagv9dxarc1l4vz4hlsyqs5z2fna2q"; depends=[Category ctc dplyr energy entropy glmnet GOstats gplots Hmisc httr impute InvariantCausalPrediction limma org_Hs_eg_db pcalg RCurl stringr SummarizedExperiment TCGAbiolinks]; }; + miRNAmeConverter = derive2 { name="miRNAmeConverter"; version="1.22.0"; sha256="1j25gslxbsvwdz2j8qyj8mc341d6sr5qamiav819lbv91h8vx7gm"; depends=[AnnotationDbi DBI miRBaseVersions_db reshape2]; }; + miRNApath = derive2 { name="miRNApath"; version="1.54.0"; sha256="014159iszf0m8kf1w36q8cp4bv60hlcqwzkizdnk1hbpxvalr5w6"; depends=[]; }; + miRNAtap = derive2 { name="miRNAtap"; version="1.28.0"; sha256="1d0khib40j3jyg7nksk0slhryaar9wjx7zwd408r4ndxqghgxj8w"; depends=[AnnotationDbi DBI plyr RSQLite sqldf stringr]; }; + miRSM = derive2 { name="miRSM"; version="1.12.0"; sha256="1p6qg1wnill41amv8sppz51b4li8zdlh8fq577fwl6yrp63rp319"; depends=[BiBitR BicARE biclust Biobase dbscan dynamicTreeCut energy fabia flashClust GFA GSEABase iBBiG igraph isa2 linkcomm MatrixCorrelation MCL mclust miRspongeR NMF org_Hs_eg_db PMA ppclust Rcpp rqubic s4vd SOMbrero subspace SummarizedExperiment WGCNA]; }; + miRcomp = derive2 { name="miRcomp"; version="1.24.0"; sha256="1kknr5m62ly03p5yzam5c3hwpaky25g3y92h6z3sg7xfjgsd9qpz"; depends=[Biobase KernSmooth miRcompData]; }; + miRmine = derive2 { name="miRmine"; version="1.16.0"; sha256="0cx7181dsfclq2dplx1wcgnaqhxlgyfxsi0g4ii82yp1ka5fpml4"; depends=[SummarizedExperiment]; }; + miRspongeR = derive2 { name="miRspongeR"; version="1.20.0"; sha256="06nczhbbvx1dmmwry88057zbvw3dq64qn5mn91ipi5qfnckb84wd"; depends=[clusterProfiler corpcor DOSE igraph linkcomm MCL org_Hs_eg_db Rcpp ReactomePA survival varhandle]; }; + mia = derive2 { name="mia"; version="1.1.19"; sha256="0fzmp349pwlka8qw58mym9zi0z35i7cfs3dnfxlygj58f9a41dk5"; depends=[ape BiocGenerics BiocParallel Biostrings DECIPHER decontam DelayedArray DelayedMatrixStats DirichletMultinomial dplyr IRanges MASS rlang S4Vectors scater scuttle SingleCellExperiment SummarizedExperiment tibble tidyr TreeSummarizedExperiment vegan]; }; + miaSim = derive2 { name="miaSim"; version="1.0.0"; sha256="0870jvqwcg08fyzb4c9qsb6sk7r4sxqzrrfzijd25sdjbqly4zzx"; depends=[deSolve poweRlaw SummarizedExperiment]; }; + miaViz = derive2 { name="miaViz"; version="1.2.0"; sha256="1plkr810cnb6kq7zqlmnx8c2mfa1gzsa92r1hj6xrqx9ykc8hapd"; depends=[ape BiocGenerics BiocParallel DelayedArray DirichletMultinomial dplyr ggnewscale ggplot2 ggraph ggtree mia purrr rlang S4Vectors scater SummarizedExperiment tibble tidygraph tidyr tidytree TreeSummarizedExperiment viridis]; }; + microRNA = derive2 { name="microRNA"; version="1.52.0"; sha256="0x145alfh8qnbnhahxhfygcqc4xwiiirabl9k9nbcyadc5fawfc1"; depends=[Biostrings]; }; + microbiome = derive2 { name="microbiome"; version="1.16.0"; sha256="0j00xbw5gh53bfij8q3q2pa8lwvn3wb23vs9lybvlhjp725h064z"; depends=[dplyr ggplot2 phyloseq reshape2 Rtsne scales tibble tidyr vegan]; }; + microbiomeDASim = derive2 { name="microbiomeDASim"; version="1.8.0"; sha256="0g3lnwr5v62lkfz5fwdpjs9lr9vb8h8grqqrvwhyin5xmgkr5lnn"; depends=[Biobase ggplot2 MASS Matrix metagenomeSeq mvtnorm pbapply phyloseq tmvtnorm]; }; + microbiomeExplorer = derive2 { name="microbiomeExplorer"; version="1.4.0"; sha256="0ghsv6yf6v3b2xqv6a5r2q0glzajmy5wa3qhsnds6v0gj62v5ycg"; depends=[Biobase biomformat broom car DESeq2 dplyr DT forcats heatmaply knitr limma lubridate magrittr matrixStats metagenomeSeq plotly purrr RColorBrewer readr reshape2 rlang rmarkdown shiny shinycssloaders shinydashboard shinyjs shinyWidgets stringr tibble tidyr vegan]; }; + microbiomeMarker = derive2 { name="microbiomeMarker"; version="1.0.0"; sha256="0sd5y2a4gl3j7z3hq1vzdlzv1dbqzdc0ifhk948wrb9mqfmgbqhq"; depends=[ALDEx2 ANCOMBC Biobase BiocGenerics biomformat Biostrings caret coin ComplexHeatmap DESeq2 dplyr edgeR ggplot2 ggsignif ggtree IRanges limma magrittr MASS metagenomeSeq multtest patchwork phyloseq plotROC purrr rlang S4Vectors tibble tidyr tidytree yaml]; }; + midasHLA = derive2 { name="midasHLA"; version="1.2.0"; sha256="1dnqx9h3qz5p6l19s0nm90a35523cn32ymgg8pri5rc3jfrilv9k"; depends=[assertthat broom dplyr formattable HardyWeinberg kableExtra knitr magrittr MultiAssayExperiment qdapTools rlang S4Vectors stringi SummarizedExperiment tibble]; }; + miloR = derive2 { name="miloR"; version="1.2.0"; sha256="1pvd8kdh6mmv10ryq038qwr07w5g0n6pnpchb653i3dixygkgd94"; depends=[BiocNeighbors BiocParallel BiocSingular cowplot dplyr edgeR ggbeeswarm ggplot2 ggraph ggrepel gtools igraph irlba limma Matrix matrixStats patchwork RColorBrewer S4Vectors SingleCellExperiment stringr SummarizedExperiment tibble tidyr]; }; + mimager = derive2 { name="mimager"; version="1.18.0"; sha256="0xd5yxbljyxzvdr8y28qk1pl9sy44q9pxkpcfmxphsbf6bvy0d5b"; depends=[affy affyPLM Biobase BiocGenerics DBI gtable oligo oligoClasses preprocessCore S4Vectors scales]; }; + mina = derive2 { name="mina"; version="1.2.0"; sha256="10nlv2l9gf5vbgh9aqa97xk628rdl3kgiybskrxipsjm8jmvw5c3"; depends=[apcluster biganalytics bigmemory foreach ggplot2 Hmisc MCL parallelDist plyr Rcpp RcppArmadillo RcppParallel reshape2 RSpectra stringr]; }; + minet = derive2 { name="minet"; version="3.52.0"; sha256="0nhgvgci4r9pjfsnvxyj2q8im1wvig4zmfx2kidw8f63x2ip2rbd"; depends=[infotheo]; }; + minfi = derive2 { name="minfi"; version="1.40.0"; sha256="0d5220nknwgi1020vhvf7408n5p80dmad66n85af5776qn84a6nx"; depends=[beanplot Biobase BiocGenerics BiocParallel Biostrings bumphunter data_table DelayedArray DelayedMatrixStats genefilter GenomeInfoDb GenomicRanges GEOquery HDF5Array illuminaio IRanges lattice limma MASS mclust nlme nor1mix preprocessCore quadprog RColorBrewer reshape S4Vectors siggenes SummarizedExperiment]; }; + mirIntegrator = derive2 { name="mirIntegrator"; version="1.24.0"; sha256="1fsab3q019a94rdb9xbdbfscyyaq9vnrfnykkmk847v75hg7sfvc"; depends=[AnnotationDbi ggplot2 graph org_Hs_eg_db Rgraphviz ROntoTools]; }; + mirTarRnaSeq = derive2 { name="mirTarRnaSeq"; version="1.2.0"; sha256="06fyw0hrmbcg24jdhlyz6z5pvp994zfmvw3c3icya5gammiqpx9n"; depends=[assertthat caTools corrplot data_table dplyr MASS pheatmap pscl purrr R_utils reshape2]; }; + missMethyl = derive2 { name="missMethyl"; version="1.28.0"; sha256="0hyix2h2sarfipx9jd2878nrl2ng6c03g1r7gm7grxzj007davpw"; depends=[AnnotationDbi BiasedUrn Biobase BiocGenerics GenomicRanges GO_db IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b4_hg19 IlluminaHumanMethylationEPICmanifest IRanges limma methylumi minfi org_Hs_eg_db ruv S4Vectors statmod stringr SummarizedExperiment]; }; + missRows = derive2 { name="missRows"; version="1.14.0"; sha256="08xfbczrrwk0ksp8bgd8kzlj388j7kp35vg7c2hncpwxzj9gcxgm"; depends=[ggplot2 gtools MultiAssayExperiment plyr S4Vectors]; }; + mistyR = derive2 { name="mistyR"; version="1.2.1"; sha256="1a3z8d1n0asis3fmpzsiyj13mhrsm72lqx36y4bj6rf3vhzsxny3"; depends=[assertthat caret deldir digest distances dplyr filelock furrr ggplot2 MASS purrr R_utils ranger readr rlang rlist stringr tibble tidyr withr]; }; + mitch = derive2 { name="mitch"; version="1.6.0"; sha256="1hllnfrc191dz4m8w9b1c4r2l0f44v9nrjan0kmmxhkki408isyn"; depends=[beeswarm echarts4r GGally ggplot2 gplots gridExtra knitr MASS plyr reshape2 rmarkdown]; }; + mitoClone2 = derive2 { name="mitoClone2"; version="1.0.0"; sha256="1miycq8vc79i3x2nl44b5icsbnp23brljc3ic92byk0zdcp3dqh5"; depends=[deepSNV GenomicRanges ggplot2 pheatmap reshape2 Rhtslib S4Vectors]; }; + mixOmics = derive2 { name="mixOmics"; version="6.17.26"; sha256="10ir4876sjmw2mw0cjvshwy3qyhsyz6g1ihyr3dycgzya0jcxw1x"; depends=[BiocParallel corpcor dplyr ellipse ggplot2 ggrepel gridExtra igraph lattice MASS matrixStats rARPACK RColorBrewer reshape2 tidyr]; }; + mnem = derive2 { name="mnem"; version="1.10.0"; sha256="078x80j1jh7drv4fkly9gayiajszjvbjfk82aslicajh9hn04rmq"; depends=[cluster data_table e1071 flexclust ggplot2 graph lattice Linnorm matrixStats naturalsort Rcpp RcppEigen Rgraphviz snowfall tsne wesanderson]; }; + moanin = derive2 { name="moanin"; version="1.2.0"; sha256="1fd4hi32krzwbpxz2qn1sh26zph94lvfkx4gc7dga911r3cms8y2"; depends=[ClusterR edgeR limma MASS matrixStats NMI reshape2 S4Vectors SummarizedExperiment topGO viridis zoo]; }; + mogsa = derive2 { name="mogsa"; version="1.28.0"; sha256="0a7d81grd3dn1im4q0xss0qqvgbas9yh5lc24fz05hbfbzwgzr2l"; depends=[Biobase BiocGenerics cluster corpcor genefilter gplots graphite GSEABase svd]; }; + monaLisa = derive2 { name="monaLisa"; version="1.0.0"; sha256="0idfq3l3sxx2gxcksvvk6ayyv2zb9hb5bls6dkincv7mraa20max"; depends=[BiocGenerics BiocParallel Biostrings BSgenome circlize ComplexHeatmap GenomeInfoDb GenomicRanges glmnet IRanges S4Vectors stabs SummarizedExperiment TFBSTools vioplot XVector]; }; + monocle = derive2 { name="monocle"; version="2.22.0"; sha256="0wb2c1jf502lrfx3d0amb09fvhalrwxvpsp99jsab162v4hddg85"; depends=[Biobase BiocGenerics biocViews cluster combinat DDRTree densityClust dplyr fastICA ggplot2 HSMMSingleCell igraph irlba limma MASS Matrix matrixStats pheatmap plyr proxy qlcMatrix RANN Rcpp reshape2 Rtsne slam stringr tibble VGAM viridis]; }; + mosaics = derive2 { name="mosaics"; version="2.32.0"; sha256="09qz4xl9xhzidw0w41bp0adkbhnasa309yn8rdi9nsfpswhaiysb"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges lattice MASS Rcpp Rsamtools S4Vectors]; }; + mosbi = derive2 { name="mosbi"; version="1.0.0"; sha256="07wnz85qcs9zqc9xjmkxs6nhdsbhgbi1bmsri299ng3ib92vlh6j"; depends=[akmbiclust BH biclust fabia igraph isa2 QUBIC RColorBrewer Rcpp RcppParallel xml2]; }; + motifStack = derive2 { name="motifStack"; version="1.38.0"; sha256="1ck6bbnrab8mbf70alfdsrcv6lq0fkvcy3klhcwyxxir7r9sgbaz"; depends=[ade4 Biostrings ggplot2 htmlwidgets XML]; }; + motifbreakR = derive2 { name="motifbreakR"; version="2.8.0"; sha256="0lrgy64sv2ma6kylp4lsbwkg6ci1kn6qkk0cvzw3m4k3bgia1npj"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges grImport Gviz IRanges matrixStats MotifDb motifStack rtracklayer S4Vectors stringr SummarizedExperiment TFMPvalue VariantAnnotation]; }; + motifcounter = derive2 { name="motifcounter"; version="1.18.0"; sha256="17yhhg423yjhaix9x2w2484l22vj6ra086ymzdfhygnjz5vanpmd"; depends=[Biostrings]; }; + motifmatchr = derive2 { name="motifmatchr"; version="1.16.0"; sha256="0f7j54zdn51h1gcn81vqs8avmschjwqprjcfpvsi00q4fna3fg7z"; depends=[Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp RcppArmadillo Rsamtools S4Vectors SummarizedExperiment TFBSTools]; }; + mpra = derive2 { name="mpra"; version="1.16.0"; sha256="14klqy7d5vkn3vhcjwra8s1bm5ck4llq3ha6yggdl5mqy5vxmv81"; depends=[BiocGenerics limma S4Vectors scales statmod SummarizedExperiment]; }; + msImpute = derive2 { name="msImpute"; version="1.4.0"; sha256="0lw5300xfk001sqrips77y2qfg5qjdapd2snsnz6gcgnhj7ds82c"; depends=[data_table dplyr FNN limma matrixStats mvtnorm pdist reticulate scran softImpute tidyr]; }; + msPurity = derive2 { name="msPurity"; version="1.20.0"; sha256="0pawspfpwp88y0q88qjsiwmjjbdscg80jv14lj2fdf11bbsra78v"; depends=[DBI dbplyr doSNOW dplyr fastcluster foreach ggplot2 jsonlite magrittr mzR plyr Rcpp reshape2 RSQLite stringr uuid]; }; + msa = derive2 { name="msa"; version="1.26.0"; sha256="0kz99bnzslnqpvmqr2x2wxiasm3rzpg4lhl9ax3dp5rmkba7hp69"; depends=[BiocGenerics Biostrings IRanges Rcpp S4Vectors]; }; + msgbsR = derive2 { name="msgbsR"; version="1.18.0"; sha256="1hapz3rywf0znhl7r5zrh0vznnkqlg8gyz4bbqj1wn64346xsd7y"; depends=[BSgenome easyRNASeq edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr R_utils Rsamtools S4Vectors SummarizedExperiment]; }; + msmsEDA = derive2 { name="msmsEDA"; version="1.32.0"; sha256="1jammjkjjkcqad2ki02l2pdf4jybyh71hv463aya2ylmzsin5vi9"; depends=[gplots MASS MSnbase RColorBrewer]; }; + msmsTests = derive2 { name="msmsTests"; version="1.32.0"; sha256="0xmjgd8rqpb8i7d46pvnj7da2di8bwfdncr48b8hgylkc98ghznb"; depends=[edgeR msmsEDA MSnbase qvalue]; }; + msqrob2 = derive2 { name="msqrob2"; version="1.2.0"; sha256="0ab9b26x8syybqmij56wjsjrmv8xyjsprrrskyz9qi7fr23mp0zc"; depends=[BiocParallel codetools limma lme4 MASS Matrix purrr QFeatures SummarizedExperiment]; }; + multiClust = derive2 { name="multiClust"; version="1.24.0"; sha256="1i06khc4yc134ny5m6i77c203pvm8r06rkplz5sd9jgjkbg68lkq"; depends=[amap cluster ctc dendextend mclust survival]; }; + multiGSEA = derive2 { name="multiGSEA"; version="1.4.0"; sha256="1nqj0pc7nj77910id5nm9sv0s1mxahjfgl3jdhpnn52q7md9y1d9"; depends=[AnnotationDbi dplyr fgsea graphite magrittr metap rappdirs rlang]; }; + multiHiCcompare = derive2 { name="multiHiCcompare"; version="1.12.0"; sha256="1b56jagvgnlw7vrrd728fm14p754gx46wyb5q5yhqj0mshnv6xh4"; depends=[aggregation BiocParallel data_table dplyr edgeR GenomeInfoDb GenomeInfoDbData GenomicRanges HiCcompare pbapply pheatmap qqman]; }; + multiMiR = derive2 { name="multiMiR"; version="1.16.0"; sha256="06mvikmy018z6zhzwg999kvmccgprd5k4hy64l1fscv0ax6rp6b8"; depends=[AnnotationDbi BiocGenerics dplyr purrr RCurl tibble XML]; }; + multiOmicsViz = derive2 { name="multiOmicsViz"; version="1.18.0"; sha256="0kg72l5zdffsnsw1yxld52j7mjbjybvqmbr11vby93jnsxxvlfm9"; depends=[doParallel foreach SummarizedExperiment]; }; + multiSight = derive2 { name="multiSight"; version="1.2.0"; sha256="06gjldjssrmf09fc6i9m0z3b7vzqyb48279333cai4gy1g9aba4w"; depends=[anyLib biosigner caret clusterProfiler config DESeq2 dplyr DT easyPubMed enrichplot golem htmltools igraph infotheo metap mixOmics networkD3 ppcor R6 ReactomePA rmarkdown rWikiPathways shiny shinydashboard stringr]; }; + multicrispr = derive2 { name="multicrispr"; version="1.4.0"; sha256="1s4x8ry16safvawjmrgbbjk4aj3igkbhgj9cfdh6cspw06ysdkyk"; depends=[assertive BiocGenerics Biostrings BSgenome CRISPRseek data_table GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 karyoploteR magrittr plyranges Rbowtie reticulate rtracklayer stringi tidyr tidyselect]; }; + multiscan = derive2 { name="multiscan"; version="1.54.0"; sha256="0qjh302hpld7zdrfqkbx8a5hrp3bwfn539pv36mwizjigjznnsi9"; depends=[Biobase]; }; + multtest = derive2 { name="multtest"; version="2.50.0"; sha256="03z71r7g318nwwgiz0k8qwbhghw1hhdhh1an4qnb0nc62c5x9kns"; depends=[Biobase BiocGenerics MASS survival]; }; + mumosa = derive2 { name="mumosa"; version="1.2.0"; sha256="093mzbkx7sf5gg5qcvyzgkfzzdpjm8pd6hb7dwavcjxf90y14l1h"; depends=[batchelor beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats igraph IRanges Matrix metapod S4Vectors ScaledMatrix scran scuttle SingleCellExperiment SummarizedExperiment uwot]; }; + muscat = derive2 { name="muscat"; version="1.8.0"; sha256="0m5i1sqi3nzxlja9nvz9msmic9mf8y9s6f60c9b2mgbfp2kyf55w"; depends=[BiocParallel blme ComplexHeatmap data_table DESeq2 dplyr edgeR ggplot2 glmmTMB limma lme4 lmerTest Matrix matrixStats progress purrr S4Vectors scales scater sctransform scuttle SingleCellExperiment SummarizedExperiment variancePartition viridis]; }; + muscle = derive2 { name="muscle"; version="3.36.0"; sha256="0a081ay0360h0r9731d145prdg15d1g96s7zzcn411qa8fwg7rv0"; depends=[Biostrings]; }; + musicatk = derive2 { name="musicatk"; version="1.4.0"; sha256="168578fg6gmg48gwd6944ln30g75nyq16yzyjw175yanj09g9qfs"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 BSgenome_Mmusculus_UCSC_mm9 cluster ComplexHeatmap cowplot data_table decompTumor2Sig deconstructSigs dplyr factoextra GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel gridExtra gtools IRanges maftools magrittr MASS matrixTests MCMCprecision NMF philentropy plotly rlang S4Vectors shiny shinyalert shinyBS shinybusy shinydashboard shinyjqui shinyjs sortable stringi stringr SummarizedExperiment TCGAbiolinks tibble tidyr topicmodels TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene uwot VariantAnnotation withr]; }; + mygene = derive2 { name="mygene"; version="1.30.0"; sha256="1s9hlcj9g2a3q2aa3ahjk3j2ksk4v9mpax1cxm739gywaf4sbknp"; depends=[GenomicFeatures Hmisc httr jsonlite plyr S4Vectors sqldf]; }; + myvariant = derive2 { name="myvariant"; version="1.24.0"; sha256="1d87iwfpfwppzdahai0rv85ky855n4slqhb9gpb4lf4yx6r11i9i"; depends=[GenomeInfoDb Hmisc httr jsonlite magrittr plyr S4Vectors VariantAnnotation]; }; + mzID = derive2 { name="mzID"; version="1.32.0"; sha256="0r001amd4m99cv0ixw38rpz0zv0xqb0qyvs16bz1i4a756391qri"; depends=[doParallel foreach iterators plyr ProtGenerics XML]; }; + mzR = derive2 { name="mzR"; version="2.28.0"; sha256="1azq0wjjy6n5xc721gjz6afm43ajz15b4p34vgsdjzwg9qn1vrs1"; depends=[Biobase BiocGenerics ncdf4 ProtGenerics Rcpp Rhdf5lib zlibbioc]; }; + nanotatoR = derive2 { name="nanotatoR"; version="1.10.0"; sha256="13q73fzzwf2whhba0phl91dn9ra71rgc7lkzh241z2sygy7xgwgk"; depends=[AnnotationDbi curl dplyr GenomicRanges hash httr knitr openxlsx org_Hs_eg_db rentrez rlang stringr testthat tidyverse VarfromPDB XML XML2R]; }; + ncGTW = derive2 { name="ncGTW"; version="1.8.0"; sha256="1f5qsfbgwv5zr0ddxymqkbszahr0l5vsa458bl23qj6x4j76zzwf"; depends=[BiocParallel Rcpp xcms]; }; + ncRNAtools = derive2 { name="ncRNAtools"; version="1.4.0"; sha256="17vil5xl9092mf0jh2282y7zw701id4xdajrcwypzgn89nw91lra"; depends=[GenomicRanges ggplot2 httr IRanges S4Vectors xml2]; }; + ncdfFlow = derive2 { name="ncdfFlow"; version="2.40.0"; sha256="1c6wb2x24ydqp5nxrx6bhj6f13x9djfy9awkc7zn63xkag7mvvar"; depends=[BH Biobase BiocGenerics flowCore Rcpp RcppArmadillo Rhdf5lib zlibbioc]; }; + ndexr = derive2 { name="ndexr"; version="1.16.0"; sha256="0px1v1iiqpryr07lnk56bg0i9aiqhvk2l556bp5vyzillf98gf76"; depends=[httr igraph jsonlite plyr tidyr]; }; + nearBynding = derive2 { name="nearBynding"; version="1.4.0"; sha256="12m44v7ydfzdqzpx4881ls6mg1npgwd549wxjlndamkzj41yha4q"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicRanges ggplot2 gplots magrittr matrixStats plyranges R_utils rlang Rsamtools rtracklayer S4Vectors transport TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + nempi = derive2 { name="nempi"; version="1.2.0"; sha256="0srpf4aryl59n186628869rxrwp3qmcx8zzslrxfflayijk4gyps"; depends=[e1071 epiNEM matrixStats mnem naturalsort nnet randomForest]; }; + netDx = derive2 { name="netDx"; version="1.6.0"; sha256="1xpsm10p0nhkr75j55s046hbg86rkwg8xz2jq0b5al8y461a79m4"; depends=[bigmemory BiocFileCache combinat doParallel foreach GenomeInfoDb GenomicRanges ggplot2 glmnet httr igraph IRanges MultiAssayExperiment plotrix pracma rappdirs RColorBrewer reshape2 ROCR Rtsne S4Vectors]; }; + netOmics = derive2 { name="netOmics"; version="1.0.0"; sha256="0mq6f5ggrmx07s3lg9g707p3r42pw6yznzjsh04bl39cz0v8vp86"; depends=[AnnotationDbi dplyr ggplot2 GO_db gprofiler2 igraph magrittr minet purrr RandomWalkRestartMH tibble tidyr]; }; + netSmooth = derive2 { name="netSmooth"; version="1.14.0"; sha256="18bf8bplhvm9igkgdydbr05qrjz9l9jhbkj50a5r6flsiwwn8xi0"; depends=[cluster clusterExperiment data_table DelayedArray entropy HDF5Array Matrix scater SingleCellExperiment SummarizedExperiment]; }; + netbiov = derive2 { name="netbiov"; version="1.28.0"; sha256="0x2sk4zfrwb2xzdj5iywadsdlrzc4s20rxdca8dc9hssb88cyjqf"; depends=[igraph]; }; + netboost = derive2 { name="netboost"; version="2.2.0"; sha256="1v52srmvvzxzv0flai5x3z2rmdxgsj8qp6y599xf7mv2n8v5wwnc"; depends=[colorspace dynamicTreeCut impute R_utils Rcpp RcppParallel WGCNA]; }; + netboxr = derive2 { name="netboxr"; version="1.6.0"; sha256="0clajqn8v9cg3cpzhqkcjb8l7mi6jdyglhlwnaaq2ic6nn9g7cfc"; depends=[clusterProfiler data_table DT gplots igraph jsonlite plyr RColorBrewer]; }; + nethet = derive2 { name="nethet"; version="1.26.0"; sha256="0bf218y1975n4h1kr1vgqrzk7n6wm7gvbplz1abcq11j601vgql7"; depends=[CompQuadForm GeneNet ggm ggplot2 glasso glmnet GSA huge ICSNP limma mclust multtest mvtnorm network]; }; + netprioR = derive2 { name="netprioR"; version="1.20.0"; sha256="0fmgvwblirhmqz41m2p1wjmj6wv60syw3k527s7110a3nxhgxxk5"; depends=[doParallel dplyr foreach ggplot2 gridExtra Matrix pROC sparseMVN]; }; + netresponse = derive2 { name="netresponse"; version="1.54.0"; sha256="0a0w58ws8p6x2skavags5313v9lb51rbjqzsyi17kd0ipmgxld08"; depends=[BiocStyle dmt ggplot2 graph igraph mclust minet plyr qvalue RColorBrewer reshape2 Rgraphviz rmarkdown]; }; + networkBMA = derive2 { name="networkBMA"; version="2.34.0"; sha256="00r7ibf2h294c862l1hd78q72d451hgm2axyvzka8xbp58w3dp8g"; depends=[BH BMA leaps Rcpp RcppArmadillo RcppEigen]; }; + ngsReports = derive2 { name="ngsReports"; version="1.10.0"; sha256="03d09hrwp8091lp8nz58vc72x7dlybcb6i0w8nkidlmq7ygyywri"; depends=[BiocGenerics Biostrings checkmate dplyr DT forcats ggdendro ggplot2 lifecycle lubridate pander plotly readr reshape2 rmarkdown scales stringr tibble tidyr tidyselect zoo]; }; + nnNorm = derive2 { name="nnNorm"; version="2.58.0"; sha256="10zjdlk9y0sdni8yjany42812b06p23v33cq6kxbv6d1cb6z9s81"; depends=[marray nnet]; }; + nondetects = derive2 { name="nondetects"; version="2.24.0"; sha256="1pb5z3k46ksllrzal4x0hsikzhqdbx0kgrs0ad04sj8xh5zhmmdh"; depends=[arm Biobase HTqPCR limma mvtnorm]; }; + normalize450K = derive2 { name="normalize450K"; version="1.22.0"; sha256="0gc2jrd5mynywl7bqdl077scapl8jnis9m9ngrn8wdlv512sahlr"; depends=[Biobase illuminaio quadprog]; }; + normr = derive2 { name="normr"; version="1.20.0"; sha256="1azfvgs6cfngqaqjfj916jdf2p2ywld62yy82wflxlvciyrwf0qy"; depends=[bamsignals GenomeInfoDb GenomicRanges IRanges qvalue Rcpp rtracklayer]; }; + npGSEA = derive2 { name="npGSEA"; version="1.30.0"; sha256="0zfbncj8x218i5yc4wymm8nckkhygvaz8kgpfpr0j2qnwsxkw8xh"; depends=[Biobase BiocGenerics GSEABase]; }; + nuCpos = derive2 { name="nuCpos"; version="1.12.0"; sha256="1sqanvdhmvbyr52mc5hvsp2kdfgy8d8bh2w4av213i96nqmz55vw"; depends=[]; }; + nucleR = derive2 { name="nucleR"; version="2.26.0"; sha256="0wfgfjrjvd0gg7i2zjxsc37dk3s7cw4jqd41hrqq31m2iqgbk6lk"; depends=[Biobase BiocGenerics Biostrings dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges magrittr Rsamtools S4Vectors ShortRead]; }; + nucleoSim = derive2 { name="nucleoSim"; version="1.22.0"; sha256="1y0f8dlarb5cm3na691ik04f3vwzdfzbd9fvffcgkfj9py6y28n5"; depends=[IRanges S4Vectors]; }; + nullranges = derive2 { name="nullranges"; version="1.0.0"; sha256="0n29ij0q96ridwbwvgsyj8c17dbscfgwgama0lxjcbvrdp4dnclh"; depends=[data_table GenomeInfoDb GenomicRanges ggplot2 ggridges InteractionSet IRanges ks plyranges progress rlang S4Vectors scales speedglm]; }; + occugene = derive2 { name="occugene"; version="1.54.0"; sha256="0kri0356b4560liv9c64nvjmyyssyb93xh244k1k2q50yy5il5b0"; depends=[]; }; + odseq = derive2 { name="odseq"; version="1.22.0"; sha256="14bkx7b1pc3kdmn1s9vbc5rb3wxzyyi8n56yrkiqvxc99zl3s9cr"; depends=[kebabs mclust msa]; }; + oligo = derive2 { name="oligo"; version="1.58.0"; sha256="1cmnnq0d5xsjsx8c8n8wcl6l9d31sbglb8yrsibykcvnhw15fsf6"; depends=[affxparser affyio Biobase BiocGenerics Biostrings DBI ff oligoClasses preprocessCore RSQLite zlibbioc]; }; + oligoClasses = derive2 { name="oligoClasses"; version="1.56.0"; sha256="1ia2f19swiwb0552nfwkai4gl0av07cj75b6jwiviqa1bli09264"; depends=[affyio Biobase BiocGenerics BiocManager Biostrings DBI ff foreach GenomicRanges IRanges RSQLite S4Vectors SummarizedExperiment]; }; + omicRexposome = derive2 { name="omicRexposome"; version="1.16.0"; sha256="0wznnvql0fyv7c2m5sd6668gf1j1vdjc0wa225kkyzm7qxj4gzyv"; depends=[Biobase ggplot2 ggrepel gridExtra isva limma MultiDataSet omicade4 PMA rexposome SmartSVA stringr SummarizedExperiment sva]; }; + omicade4 = derive2 { name="omicade4"; version="1.34.0"; sha256="0lq71sya6lxy0j33d97gf28mvvkir6820css5d23fc7si27w5swm"; depends=[ade4 Biobase made4]; }; + omicplotR = derive2 { name="omicplotR"; version="1.14.0"; sha256="1pwflkxmg1ava97llh7n5gcr6zvl9dlc5c2bgy6k6nz0sy0mnv8j"; depends=[ALDEx2 compositions DT jsonlite knitr matrixStats rmarkdown shiny vegan zCompositions]; }; + omicsPrint = derive2 { name="omicsPrint"; version="1.14.0"; sha256="1330hxwyivyrcn32xszf5h0mlxxxdih5jn4g12b8vv004a2lqnzd"; depends=[MASS matrixStats MultiAssayExperiment RaggedExperiment SummarizedExperiment]; }; + oncomix = derive2 { name="oncomix"; version="1.16.0"; sha256="170b7xyb7j5hwhlwl3dziq7h9wckglibaw04kcya4fnjh3zjry21"; depends=[ggplot2 ggrepel mclust RColorBrewer SummarizedExperiment]; }; + oneSENSE = derive2 { name="oneSENSE"; version="1.16.0"; sha256="1c6zjw6yfndb0gj974481c9jc2wb3l0c01zlk89z3i0nxs6bvkj9"; depends=[flowCore gplots plotly Rtsne scatterplot3d shiny shinyFiles webshot]; }; + onlineFDR = derive2 { name="onlineFDR"; version="2.2.0"; sha256="0qqkxfq3993xqs44yj171s5bj992m4g79rzbc3ysja1afcxln5z7"; depends=[dplyr ggplot2 progress Rcpp RcppProgress tidyr]; }; + ontoProc = derive2 { name="ontoProc"; version="1.16.0"; sha256="15ds6n3dn3l45vdzmc7qp3wk0ndx7q6yhnwa2ywnlljl8jvi83qj"; depends=[AnnotationDbi AnnotationHub Biobase BiocFileCache dplyr DT graph igraph magrittr ontologyIndex ontologyPlot Rgraphviz S4Vectors shiny]; }; + openCyto = derive2 { name="openCyto"; version="2.6.0"; sha256="11svr1lk383pkm4npwrnf3h37b3drjsmcwcgdbb45x8k2k95z2fm"; depends=[Biobase BiocGenerics clue data_table flowClust flowCore flowStats flowViz flowWorkspace graph gtools ks lattice MASS ncdfFlow plyr R_utils RBGL RColorBrewer Rcpp rrcov]; }; + openPrimeR = derive2 { name="openPrimeR"; version="1.16.0"; sha256="078pqsxs7017jgswrlzrsbn42q84q3wj7h83paldsc9js3mxcbp9"; depends=[ape BiocGenerics Biostrings DECIPHER digest distr distrEx dplyr fitdistrplus foreach GenomicRanges ggplot2 Hmisc IRanges lpSolveAPI magrittr openxlsx plyr RColorBrewer reshape2 S4Vectors scales seqinr stringdist stringr uniqtag XML]; }; + openPrimeRui = derive2 { name="openPrimeRui"; version="1.16.0"; sha256="0h3ic5lpf5i0dykirdbzac1f2vdbiq4cfxi4iyj612ayd3arlg6h"; depends=[DT openPrimeR rmarkdown shiny shinyBS shinyjs]; }; + oposSOM = derive2 { name="oposSOM"; version="2.12.0"; sha256="14ib08i4hf3cyakp7hv994qapbl3kqnbyvsr26i45v6l9s90v37b"; depends=[ape Biobase biomaRt fastICA fdrtool graph igraph pixmap png Rcpp RcppParallel RCurl scatterplot3d tsne XML]; }; + oppar = derive2 { name="oppar"; version="1.22.0"; sha256="1sx5wqim9aiz3q5xc68am73lwj98g9mwgnzgb4yggjbvfh05aylf"; depends=[Biobase GSEABase GSVA]; }; + oppti = derive2 { name="oppti"; version="1.8.0"; sha256="0rvsk9lry3ffssrg5r6wpwxjhy7qf6y5agixn8l8pnwq6afsh012"; depends=[devtools ggplot2 knitr limma parallelDist pheatmap RColorBrewer reshape]; }; + optimalFlow = derive2 { name="optimalFlow"; version="1.6.0"; sha256="1bl3ji4cqgiv9krhsapz4hrzda4jszb9r9pl095sxs6pzaa2ssyp"; depends=[dbscan doParallel dplyr ellipse flowMeans foreach optimalFlowData randomForest Rfast rgl rlang robustbase transport]; }; + orthogene = derive2 { name="orthogene"; version="1.0.0"; sha256="113l8qwq9vv8dhah5lrvm68g60562pmwfzdaipykznmkix1cqsl0"; depends=[babelgene data_table DelayedArray DelayedMatrixStats dplyr GenomeInfoDbData ggplot2 ggpubr gprofiler2 grr homologene jsonlite Matrix Matrix_utils patchwork repmis]; }; + pRoloc = derive2 { name="pRoloc"; version="1.34.0"; sha256="1gzvd5ll0xdx6v6rzfvnjwijpvisl8x61fihyqh1gwz2zqxm86bz"; depends=[Biobase BiocGenerics BiocParallel biomaRt caret class coda dendextend e1071 FNN ggplot2 gtools hexbin kernlab knitr LaplacesDemon lattice MASS mclust mixtools MLInterfaces MSnbase mvtnorm nnet plyr proxy randomForest RColorBrewer Rcpp RcppArmadillo sampling scales]; }; + pRolocGUI = derive2 { name="pRolocGUI"; version="2.4.0"; sha256="1qpr92ryjw8w2sxlycmfr9x5z6l9wnvvvy7ylrwr936x9ph6zzys"; depends=[Biobase BiocGenerics colorspace colourpicker dplyr DT ggplot2 MSnbase pRoloc scales shiny shinydashboard shinydashboardPlus shinyhelper shinyjs shinyWidgets]; }; + packFinder = derive2 { name="packFinder"; version="1.6.0"; sha256="143w988hqbk13wbvkm88fdv2j8ki9m4q3ar25cfp0ahpjx2r6d0c"; depends=[ape Biostrings GenomicRanges IRanges kmer S4Vectors]; }; + padma = derive2 { name="padma"; version="1.4.0"; sha256="1gs2g5w712vankyyndqn1j3jl3lfm2qq6bizq7rywiih06hnawcl"; depends=[FactoMineR MultiAssayExperiment S4Vectors SummarizedExperiment]; }; + pageRank = derive2 { name="pageRank"; version="1.4.0"; sha256="0j5310jfgxgmiqzsjchilxyjim4c6ar0qw97kpm8d9h2cvnk20rd"; depends=[GenomicRanges igraph motifmatchr]; }; + paircompviz = derive2 { name="paircompviz"; version="1.32.0"; sha256="1hp42pc2y4km8n1ry9r4hx3wfm92c7yaliz68m2yr7vjx11x1nid"; depends=[Rgraphviz]; }; + pairkat = derive2 { name="pairkat"; version="1.0.0"; sha256="0siqm6xsbqr96528kw8yqmr7bc5p7d8y56gpa6hmnrds3bh450r2"; depends=[CompQuadForm data_table dplyr igraph KEGGREST magrittr S4Vectors SummarizedExperiment tibble]; }; + pandaR = derive2 { name="pandaR"; version="1.26.0"; sha256="0aj4iwvpg75b78rh5z430x2lzq4yf4789vylgdlgas62z81fl71l"; depends=[Biobase BiocGenerics ggplot2 hexbin igraph matrixStats plyr reshape RUnit]; }; + panelcn_mops = derive2 { name="panelcn.mops"; version="1.16.0"; sha256="1rais9gasa0ll1kfrxmxcxg7dg5d2sq6057anlzw4ri6fgvsnv4z"; depends=[cn_mops GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; }; + panp = derive2 { name="panp"; version="1.64.0"; sha256="1z3pwb9gx4pgrzvx6ziph5bb85n2j6c18xby0rrmsvr7x19q16nc"; depends=[affy Biobase]; }; + parglms = derive2 { name="parglms"; version="1.26.0"; sha256="09p7iplwa802sjrr246a3pdsjpy1s2ywk82n6yjryf13mfp0vdf8"; depends=[BatchJobs BiocGenerics doParallel foreach]; }; + parody = derive2 { name="parody"; version="1.52.0"; sha256="1f1bwy2pmjcwfnxmy0sqlfmvg0wp18m1m78wr3s1qr9qlqpi5ln8"; depends=[]; }; + pathRender = derive2 { name="pathRender"; version="1.62.0"; sha256="1an9fqsyjyvshmwmqh0csz9l72xra2sml2b65sbmnm18mj7agayj"; depends=[AnnotationDbi cMAP graph RColorBrewer Rgraphviz]; }; + pathVar = derive2 { name="pathVar"; version="1.24.0"; sha256="18zdzn17p701ad1yr8ma6jiaxd3w56j73j1sqkk9b9nyjkfnk122"; depends=[data_table EMT ggplot2 gridExtra Matching mclust]; }; + pathifier = derive2 { name="pathifier"; version="1.32.0"; sha256="14fsmslhv6cil4mpi7z3pg7ygpj3d36962xswl89j4zr3663vk3f"; depends=[princurve R_oo]; }; + pathview = derive2 { name="pathview"; version="1.34.0"; sha256="1jdl81lvrsz03b1nws90nssf2clipipzaqvwm1pq57mvshnlnkjr"; depends=[AnnotationDbi graph KEGGgraph KEGGREST org_Hs_eg_db png Rgraphviz XML]; }; + pathwayPCA = derive2 { name="pathwayPCA"; version="1.10.0"; sha256="01m2g8icx7gq4fpxxxm356wr8wc5dmq3lnvr1s5dj1qqm4hk70xr"; depends=[lars survival]; }; + paxtoolsr = derive2 { name="paxtoolsr"; version="1.28.0"; sha256="0c72fp6nisv6j0rkzw4yip3f94wq990nkmaw3h7lv5r5gpj9b69x"; depends=[httr igraph jsonlite plyr R_utils rappdirs readr rJava rjson XML]; }; + pcaExplorer = derive2 { name="pcaExplorer"; version="2.20.0"; sha256="0b4wskh6kyqrj3hn83jwcqdp92nzzw3y3r74j5q5ksvad03dl6al"; depends=[AnnotationDbi base64enc biomaRt DESeq2 DT genefilter GenomicRanges ggplot2 ggrepel GO_db GOstats heatmaply IRanges knitr limma NMF pheatmap plotly plyr rmarkdown S4Vectors scales shiny shinyAce shinyBS shinydashboard SummarizedExperiment threejs tidyr topGO]; }; + pcaMethods = derive2 { name="pcaMethods"; version="1.86.0"; sha256="1fj2v6sna4lbw7ar9h93y2g4pzylqqp7760ih425gcai7s19xdrg"; depends=[Biobase BiocGenerics MASS Rcpp]; }; + pcxn = derive2 { name="pcxn"; version="2.16.0"; sha256="1n61gn1k74k61rrfp340kjchafrfmfidslkqxdr0ijbacbp017qw"; depends=[pcxnData pheatmap]; }; + pdInfoBuilder = derive2 { name="pdInfoBuilder"; version="1.58.0"; sha256="1vk0kppsg9vynwzflkv3frv16hsl43lpk9awr6x22a1frmpndj10"; depends=[affxparser Biobase BiocGenerics Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + peakPantheR = derive2 { name="peakPantheR"; version="1.8.0"; sha256="0czryplga40w5ipzqwzil48vyxll6pscpy80r0gwzxw0mw0sw80k"; depends=[doParallel DT foreach ggplot2 gridExtra minpack_lm MSnbase mzR pracma scales shiny shinycssloaders shinythemes stringr XML]; }; + peco = derive2 { name="peco"; version="1.6.0"; sha256="14h7lmijllffhwpybpcvgkzpj5i0n1pbf25gbjgkyzyn21fcf93g"; depends=[assertthat circular conicfit doParallel foreach genlasso scater SingleCellExperiment SummarizedExperiment]; }; + pengls = derive2 { name="pengls"; version="1.0.0"; sha256="0415pxlxd2dmr5zphjrszylglj8hjrifawxzmfz2ns8p9hagr0f4"; depends=[BiocParallel glmnet nlme]; }; + pepStat = derive2 { name="pepStat"; version="1.28.0"; sha256="07k5hilmnjhqcndq6vmibargf7fr0ah4zpcd2mm6656w3xy1ywax"; depends=[Biobase data_table fields GenomicRanges ggplot2 IRanges limma plyr]; }; + pepXMLTab = derive2 { name="pepXMLTab"; version="1.28.0"; sha256="0wk502spk5cmhvygnirfywk4dq13imvvbnxy97ak2c011phpaxf1"; depends=[XML]; }; + periodicDNA = derive2 { name="periodicDNA"; version="1.4.0"; sha256="1v6rl234qs0la2r7qwiahslw7yr8mppcdcpand2lk8w862k67nda"; depends=[BiocParallel Biostrings BSgenome cowplot GenomeInfoDb GenomicRanges ggplot2 IRanges magrittr rtracklayer S4Vectors zoo]; }; + perturbatr = derive2 { name="perturbatr"; version="1.13.0"; sha256="0ssk8cr42hibn917s2z2nzcdan54c7xiydypbi8f3g4w68q4ly31"; depends=[assertthat diffusr doParallel dplyr foreach formula_tools ggplot2 igraph lazyeval lme4 magrittr rlang scales tibble tidyr]; }; + pgca = derive2 { name="pgca"; version="1.18.0"; sha256="1wrp4k0b1sj75yhw799aqcb6dmimza6gvcxkn5ayfn6x3hfifwwl"; depends=[]; }; + phantasus = derive2 { name="phantasus"; version="1.14.0"; sha256="0p8xa0jqasgn61qzzva7wrjk8d2xcsn9kd20c4dbc61sg3cxrcir"; depends=[AnnotationDbi assertthat Biobase ccaPP curl DESeq2 fgsea GEOquery ggplot2 gtable htmltools httpuv httr jsonlite limma Matrix opencpu pheatmap protolite rhdf5 Rook scales stringr svglite]; }; + phemd = derive2 { name="phemd"; version="1.9.0"; sha256="0hqivlc9hzcfcprng1499nas84fwvgisg8976vsjciyn903355jr"; depends=[Biobase BiocGenerics cluster cowplot ggplot2 igraph maptree monocle phateR pheatmap pracma RANN RColorBrewer reticulate Rtsne S4Vectors scatterplot3d Seurat SingleCellExperiment SummarizedExperiment transport VGAM]; }; + phenoTest = derive2 { name="phenoTest"; version="1.42.0"; sha256="0ci44hwicvz32sgv6mywawyygd1wzz2bayx6rshwvpmz1mixncq6"; depends=[annotate AnnotationDbi Biobase biomaRt BMA Category ellipse genefilter ggplot2 gplots GSEABase Heatplus hgu133a_db Hmisc hopach limma mgcv survival xtable]; }; + phenopath = derive2 { name="phenopath"; version="1.18.0"; sha256="1c0cxm3cwxprjkkwimzgjz0h67dykx2jy7jin13h7vzpwwvphh2p"; depends=[dplyr ggplot2 Rcpp SummarizedExperiment tibble tidyr]; }; + philr = derive2 { name="philr"; version="1.20.0"; sha256="0dndab3wsj9mvgjpkmazd55w72cjh5xwjqs0xzjbfmkx7786rk09"; depends=[ape ggplot2 ggtree phangorn tidyr]; }; + phosphonormalizer = derive2 { name="phosphonormalizer"; version="1.18.0"; sha256="0qbls06h7fkqsg8yhnc8dmbqhkgxxxa29j3h7cwxdq4nvg66frjl"; depends=[matrixStats plyr]; }; + phyloseq = derive2 { name="phyloseq"; version="1.38.0"; sha256="0k0aj8f7g1vr7l0qcc507b3w67zc1k9x7sdblm7mjb20zqr3916s"; depends=[ade4 ape Biobase BiocGenerics biomformat Biostrings cluster data_table foreach ggplot2 igraph multtest plyr reshape2 scales vegan]; }; + piano = derive2 { name="piano"; version="2.10.0"; sha256="13nnysbr2ljh0r303aja797bjxppksc6ac0qms8qy8nkn155gcw3"; depends=[Biobase BiocGenerics DT fgsea gplots htmlwidgets igraph marray relations scales shiny shinydashboard shinyjs visNetwork]; }; + pickgene = derive2 { name="pickgene"; version="1.66.0"; sha256="0l5gk659gxh7i0sq3j1dg1v69p108ig84d735dv3x8mf9bq1mfhk"; depends=[MASS]; }; + pipeComp = derive2 { name="pipeComp"; version="1.4.0"; sha256="1r61m3468b4v3vw60yywgxs4r4w1lr55wgwndll6wfh62pzgvrf2"; depends=[aricode BiocParallel circlize clue cluster ComplexHeatmap cowplot dplyr ggplot2 intrinsicDimension knitr Matrix matrixStats randomcoloR RColorBrewer reshape2 Rtsne S4Vectors scales scater scran Seurat SingleCellExperiment SummarizedExperiment uwot viridisLite]; }; + pipeFrame = derive2 { name="pipeFrame"; version="1.10.0"; sha256="0463z7kyaar474yfa05j754df49yasl3qmsfxz0qb3y1d7p37grr"; depends=[Biostrings BSgenome digest GenomeInfoDb magrittr rmarkdown visNetwork]; }; + pkgDepTools = derive2 { name="pkgDepTools"; version="1.60.0"; sha256="1ah9fzrwj9cc1vnv66dp27w41w9c7k48xzn7phwiavyn786k1ajf"; depends=[graph RBGL]; }; + planet = derive2 { name="planet"; version="1.2.0"; sha256="1cw4v69rfi2d0awpxcvhr0jvnbavvjmsnhkaqkq8538adbf7x7mr"; depends=[dplyr magrittr tibble]; }; + plethy = derive2 { name="plethy"; version="1.32.0"; sha256="0zn8jm525rxpbr268f98iqrwn27hw07s9sg9ln6mh9j05pqdjkcr"; depends=[Biobase BiocGenerics DBI ggplot2 IRanges plyr RColorBrewer reshape2 RSQLite S4Vectors Streamer]; }; + plgem = derive2 { name="plgem"; version="1.66.0"; sha256="06w8xlw4j1fc9ipdgw55dvhp07f04icmhr20lqzwwhqd5pskrra3"; depends=[Biobase MASS]; }; + plier = derive2 { name="plier"; version="1.64.0"; sha256="1sw89kici1h2xfg7zvrfdm7b7iw5n3mzwhyz82676w2vk0lgkpn4"; depends=[affy Biobase]; }; + plotGrouper = derive2 { name="plotGrouper"; version="1.12.0"; sha256="191grbs8sy8jfxz9a6vsp9qf3zaqppp23fcl5qdrmfzims9krhlw"; depends=[colourpicker dplyr egg ggplot2 ggpubr gridExtra gtable Hmisc magrittr readr readxl rlang scales shiny shinythemes stringr tibble tidyr]; }; + plotgardener = derive2 { name="plotgardener"; version="1.0.0"; sha256="02qqzqb4fdfg3j0hhfjpy8q7xbbsb2n2d79pvsa1dhyihwai5w0q"; depends=[curl data_table dplyr ggplotify plyranges purrr RColorBrewer Rcpp rlang strawr]; }; + plyranges = derive2 { name="plyranges"; version="1.14.0"; sha256="1s4zyr57x71v9ywdz6s27z158nhazwhmhkx3944l8zsqd5ciwnnc"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges IRanges magrittr rlang Rsamtools rtracklayer S4Vectors tidyselect]; }; + pmm = derive2 { name="pmm"; version="1.26.0"; sha256="0vmkpqxf0lfgkbmyvham128201d33dv3wf9g31nrlwnxd0jcxszn"; depends=[lme4]; }; + pmp = derive2 { name="pmp"; version="1.6.0"; sha256="15yggymqh329f2ibhmg9wmh76hbyn0gpz9k1cxzkvh787lss1w72"; depends=[ggplot2 impute matrixStats missForest pcaMethods reshape2 S4Vectors SummarizedExperiment]; }; + podkat = derive2 { name="podkat"; version="1.26.0"; sha256="0xj0cvw5wj29qfdjs25gawxm2fpbd1dypga54j0fi7nzp94y8ydr"; depends=[Biobase BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp Rhtslib Rsamtools]; }; + pogos = derive2 { name="pogos"; version="1.14.0"; sha256="0chvlasp42j63hjv7s9swas9m91wkl264wng2r7461pa5kq9x2pp"; depends=[ggplot2 httr ontoProc rjson S4Vectors shiny]; }; + polyester = derive2 { name="polyester"; version="1.30.0"; sha256="0399jal3f2f4bxfxclx54rxxs8azvm63whjiqwrnkq0s3n7wd08y"; depends=[Biostrings IRanges limma logspline S4Vectors zlibbioc]; }; + powerTCR = derive2 { name="powerTCR"; version="1.14.0"; sha256="0c7crgiwpizynl1bd4i5si96kw7cffnnhsbz4w44a3wd1d6ibk4g"; depends=[cubature doParallel evmix foreach magrittr purrr truncdist vegan VGAM]; }; + ppcseq = derive2 { name="ppcseq"; version="1.2.0"; sha256="1rjqyq31lm54apznp3ymk8mm3vcyq4yxz026awy3dh4s53nzsv0a"; depends=[benchmarkme BH dplyr edgeR foreach furrr future ggplot2 lifecycle magrittr purrr Rcpp RcppEigen rlang rstan rstantools StanHeaders tibble tidybayes tidyr]; }; + ppiStats = derive2 { name="ppiStats"; version="1.60.0"; sha256="1xidx2dc1vi9p6m4k73afy9whhl2hv7yk3m6w5ari9ya0h20qccp"; depends=[Biobase Category graph lattice RColorBrewer]; }; + pqsfinder = derive2 { name="pqsfinder"; version="2.10.0"; sha256="1y5y321b2j76k5x1fl3v7xk4q2zg9f0amjl3203113srgjfgm09c"; depends=[BH Biostrings GenomicRanges IRanges Rcpp S4Vectors]; }; + pram = derive2 { name="pram"; version="1.10.0"; sha256="09429ara5j09429iz66s921nr5n6wgq0ib3zlw63v237findgjm3"; depends=[BiocGenerics BiocParallel data_table GenomeInfoDb GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; }; + prebs = derive2 { name="prebs"; version="1.34.0"; sha256="1dxsz7z5x1cx21gmvh02dy9h7d8rxz5ycwmj2xppr69hlsvvjh9p"; depends=[affy Biobase GenomeInfoDb GenomicAlignments GenomicRanges IRanges RPA S4Vectors]; }; + preciseTAD = derive2 { name="preciseTAD"; version="1.4.0"; sha256="0wb5d3qbz8hd7hnw0mb4vqc4b1v1x7fwskii4kfpmv0bafck5vvd"; depends=[caret cluster dbscan doSNOW e1071 foreach GenomicRanges gtools IRanges ModelMetrics pbapply pROC PRROC randomForest rCGH S4Vectors]; }; + predictionet = derive2 { name="predictionet"; version="1.40.0"; sha256="1f3ghlcfnls9mx2hbs923rdz7kn0wdhy2csp1y1286c5q5dybrgh"; depends=[catnet igraph MASS penalized RBGL]; }; + preprocessCore = derive2 { name="preprocessCore"; version="1.56.0"; sha256="1i93vdqa6pwzamiryp3lv6cyvhx9shs01is0q6vbmdvcbii2vf3x"; depends=[]; }; + primirTSS = derive2 { name="primirTSS"; version="1.12.0"; sha256="0pm9yd5pd7igw5l2f9fbbi7rp2nxjqp9cn80i46q1m4bj65cgng7"; depends=[BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg38 dplyr GenomicRanges GenomicScores Gviz IRanges JASPAR2018 phastCons100way_UCSC_hg38 purrr R_utils rtracklayer S4Vectors shiny stringr TFBSTools tibble tidyr]; }; + proActiv = derive2 { name="proActiv"; version="1.4.0"; sha256="1jnpplxd030syrjwhzcyl43a7g5dy0pmhns35kfcp5l6aw3bafkg"; depends=[AnnotationDbi BiocParallel data_table DESeq2 dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gplots IRanges rlang S4Vectors scales SummarizedExperiment tibble]; }; + proBAMr = derive2 { name="proBAMr"; version="1.28.0"; sha256="0bn65jf56aqabb65dqnp3zmjgmnd8q0vbhy2ddc20hcyj5v1hvb0"; depends=[AnnotationDbi Biostrings GenomicFeatures GenomicRanges IRanges rtracklayer]; }; + proBatch = derive2 { name="proBatch"; version="1.10.0"; sha256="0s1276s1mfpv3psnq91k7ip1dr6x6fyw78r12zy4w1hhjqlz1g7s"; depends=[Biobase corrplot data_table dplyr ggfortify ggplot2 lazyeval lubridate magrittr pheatmap preprocessCore purrr pvca RColorBrewer reshape2 rlang scales sva tibble tidyr viridis wesanderson WGCNA]; }; + proDA = derive2 { name="proDA"; version="1.8.0"; sha256="11as09lmpls1nzy575dk9l0afx6wrv2nxbsrsq3qa40s5rh5bbj1"; depends=[BiocGenerics extraDistr S4Vectors SummarizedExperiment]; }; + proFIA = derive2 { name="proFIA"; version="1.20.0"; sha256="0bbh35pg5dby4my51m895kzgnsc8xzrniy3bjqc5v9w47nl7p6zk"; depends=[Biobase BiocParallel minpack_lm missForest pracma ropls xcms]; }; + procoil = derive2 { name="procoil"; version="2.22.0"; sha256="1w2fqrxs3bm0z2qh9mmq3wz3x3iw8w7qnf8vh5zrrw87k7zpva78"; depends=[Biostrings kebabs S4Vectors]; }; + profileScoreDist = derive2 { name="profileScoreDist"; version="1.22.0"; sha256="0j5rhxsld3vqmf7kdch0hfzfiyyr66g1r1ahzmw3vz51qfkkk379"; depends=[BiocGenerics Rcpp]; }; + profileplyr = derive2 { name="profileplyr"; version="1.10.0"; sha256="11xcm3xack6xqrvsz9gvjfmwjy623b0v5vrz5l30jiaigpfdlx4r"; depends=[BiocGenerics BiocParallel Cairo ChIPseeker circlize ComplexHeatmap dplyr EnrichedHeatmap GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges magrittr org_Hs_eg_db org_Mm_eg_db pheatmap R_utils rGREAT rjson rlang Rsamtools rtracklayer S4Vectors soGGi SummarizedExperiment tidyr tiff TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene]; }; + progeny = derive2 { name="progeny"; version="1.16.0"; sha256="0zhr5i5v87akzqjb6wid67nhg2icrw6w0awdy87x848c6c1i6j9y"; depends=[Biobase dplyr ggplot2 ggrepel gridExtra tidyr]; }; + projectR = derive2 { name="projectR"; version="1.10.0"; sha256="1ny6fdjqc4smd2b7s5zknm0m8mi1wrapcbzlj4n8d1mhd1xxms0d"; depends=[cluster CoGAPS dplyr ggalluvial ggplot2 limma NMF RColorBrewer reshape2 ROCR scales viridis]; }; + proteinProfiles = derive2 { name="proteinProfiles"; version="1.34.0"; sha256="049q579x3m1sw0l5n22ldsrdkmcx61j8jlabq8kydwdhr6d9mbli"; depends=[]; }; + psichomics = derive2 { name="psichomics"; version="1.20.0"; sha256="158a9v201z1ad3fm572nz57l8czs8d5nhk9ig162cl1mpfhfrh35"; depends=[AnnotationDbi AnnotationHub BiocFileCache cluster colourpicker data_table digest dplyr DT edgeR fastICA fastmatch ggplot2 ggrepel highcharter htmltools httr jsonlite limma pairsD3 plyr purrr R_utils Rcpp recount reshape2 Rfast shiny shinyBS shinyjs stringr SummarizedExperiment survival XML xtable]; }; + psygenet2r = derive2 { name="psygenet2r"; version="1.26.0"; sha256="1fs2ljshqfyq4hnlm882fc0vd7x4sif5k3qlliqbxai6k5sdh3li"; depends=[BgeeDB Biobase biomaRt ggplot2 GO_db igraph labeling RCurl reshape2 stringr topGO]; }; + ptairMS = derive2 { name="ptairMS"; version="1.2.0"; sha256="1y6wpg85058migpgyankns5v84jv4fk8n7raxxfryn85bqsn0ida"; depends=[Biobase bit64 chron data_table doParallel DT enviPat foreach ggplot2 ggpubr gridExtra Hmisc minpack_lm MSnbase plotly Rcpp rhdf5 rlang scales shiny shinyscreenshot signal]; }; + pulsedSilac = derive2 { name="pulsedSilac"; version="1.8.0"; sha256="0k2rq76bxg9cq6vjvwwx51hph6s0z1xmka62x6hv19qwakc64qnn"; depends=[cowplot ggplot2 ggridges MuMIn R_utils robustbase S4Vectors SummarizedExperiment taRifx UpSetR]; }; + puma = derive2 { name="puma"; version="3.36.0"; sha256="0li5xxvvf1346ilc6ksg0w9ri2r2w9l7cm0d7i3s2y3bai7g36ka"; depends=[affy affyio Biobase mclust oligo oligoClasses]; }; + pvac = derive2 { name="pvac"; version="1.42.0"; sha256="0zic1p12nn6yb5spkz01wr6c15cq7ilhhb2xxkxj0fsw1qalfgnb"; depends=[affy Biobase]; }; + pvca = derive2 { name="pvca"; version="1.34.0"; sha256="12d4rc29qj8sf3y3j3gfnihs7gy7gq3hnlb1ivzsqqw8rwk53cyg"; depends=[Biobase lme4 Matrix vsn]; }; + pwOmics = derive2 { name="pwOmics"; version="1.26.0"; sha256="1r38hbkyai2cf9izljp8sr2mx9ql6bznnfm9gra6kmnhlz0lrw1c"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics biomaRt data_table GenomicRanges gplots graph igraph rBiopaxParser STRINGdb]; }; + pwrEWAS = derive2 { name="pwrEWAS"; version="1.8.0"; sha256="08z5phrwvpc3xaw7vzq4jam2aaba8i6vb46zm420fby7lxrc2bbx"; depends=[abind BiocManager CpGassoc doParallel doSNOW foreach genefilter ggplot2 limma pwrEWAS_data shiny shinyBS shinyWidgets truncnorm]; }; + qPLEXanalyzer = derive2 { name="qPLEXanalyzer"; version="1.12.0"; sha256="03v1q13xxnbi3r43b4y5psfmcpavnvx2ccr8r0gd6hfhx4wg98a2"; depends=[assertthat Biobase BiocGenerics Biostrings dplyr ggdendro ggplot2 IRanges limma magrittr MSnbase preprocessCore purrr RColorBrewer readr rlang scales stringr tibble tidyr tidyselect]; }; + qckitfastq = derive2 { name="qckitfastq"; version="1.10.0"; sha256="177agr9q2rjdk67kc2nv6idnqqk2aq595yc83r8pq6h2wp2ynmn0"; depends=[data_table dplyr ggplot2 magrittr Rcpp reshape2 rlang RSeqAn seqTools zlibbioc]; }; + qcmetrics = derive2 { name="qcmetrics"; version="1.32.0"; sha256="1wfc8v1z77wpqfslls8vkw9vi51ylnr8ssr6lm8xz1jd9zijf9ny"; depends=[Biobase knitr pander S4Vectors xtable]; }; + qpcrNorm = derive2 { name="qpcrNorm"; version="1.52.0"; sha256="0zbp5kd6lm1qg9xzg9mibcqm7r3ap9gz7fhaf07ls5q1zk63cdj9"; depends=[affy Biobase limma]; }; + qpgraph = derive2 { name="qpgraph"; version="2.28.0"; sha256="03xkx3ck41xd62v5xnyzkqr4mj9cxsyx20fm4cw5688a1w6znafc"; depends=[annotate AnnotationDbi Biobase BiocParallel GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges Matrix mvtnorm qtl Rgraphviz S4Vectors]; }; + qrqc = derive2 { name="qrqc"; version="1.48.0"; sha256="1bnm1shj543kfzljlp5hzk40k6sijja161g2fi06xy2qydilxsml"; depends=[Biostrings biovizBase brew ggplot2 plyr reshape Rhtslib testthat xtable]; }; + qsea = derive2 { name="qsea"; version="1.20.0"; sha256="095ais50x4csqxjj3nq7w2h3xkr4acn3bbkmqilmy7nnpj9z9dnz"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges gtools HMMcopy IRanges limma Rsamtools rtracklayer zoo]; }; + qsmooth = derive2 { name="qsmooth"; version="1.10.0"; sha256="01h7amkhbnzrp5m3j5gb1qqmfszi1qpz5vsimkrzkmpvidg932jh"; depends=[Hmisc SummarizedExperiment sva]; }; + quantiseqr = derive2 { name="quantiseqr"; version="1.2.0"; sha256="1f36i3dda8b8j332cn881sdv7bimjlzraxvy3g7m9mb4m17f97i4"; depends=[Biobase ggplot2 limSolve MASS preprocessCore rlang SummarizedExperiment tidyr]; }; + quantro = derive2 { name="quantro"; version="1.28.0"; sha256="1r2wbsndc0ji22ap27gbr1wy8icj3cjxwqlz1x0gvxkaj69mwsfq"; depends=[Biobase doParallel foreach ggplot2 iterators minfi RColorBrewer]; }; + quantsmooth = derive2 { name="quantsmooth"; version="1.60.0"; sha256="137smvhk80h557mmxn0i14yp4cxlbha66jj1rqka8ln0flrak98s"; depends=[quantreg]; }; + qusage = derive2 { name="qusage"; version="2.28.0"; sha256="0sb6p8kx9kw2f5xjbiiizq5p8jxsawy8yaf18i2m8kf52f9s3scz"; depends=[Biobase emmeans fftw limma nlme]; }; + qvalue = derive2 { name="qvalue"; version="2.26.0"; sha256="1mn2qmqn89lfsx7rg54d1lwz45bfx0b91q6ahf43a1yzrrhwn138"; depends=[ggplot2 reshape2]; }; + r3Cseq = derive2 { name="r3Cseq"; version="1.40.0"; sha256="06jcj2i8p7zrwhcszv4yzpvlbqx64ryrq8jy75zp2qxilx784m2d"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges IRanges qvalue RColorBrewer Rsamtools rtracklayer sqldf VGAM]; }; + rBiopaxParser = derive2 { name="rBiopaxParser"; version="2.34.0"; sha256="16nx5gfa5bfmzxs01rpgx3av8lmh9k707jgj9s63zkxxnxq5gilz"; depends=[data_table XML]; }; + rCGH = derive2 { name="rCGH"; version="1.24.0"; sha256="18gk79j8li02ix6gdl27wyhmz65iqqp020zrj4ajw6l17r5d4k2y"; depends=[aCGH affy AnnotationDbi DNAcopy GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges lattice limma mclust org_Hs_eg_db plyr shiny TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + rDGIdb = derive2 { name="rDGIdb"; version="1.20.0"; sha256="1f87w5r9xnbn0xyb6mf7w5rm06spqv1lv9xlakm8yhmzjhdrz1bj"; depends=[httr jsonlite]; }; + rGADEM = derive2 { name="rGADEM"; version="2.42.0"; sha256="1v8xgqqv7m2kyc38x9ppwsv87ivll5ppd6z76zcxj5yspkkrqw3v"; depends=[Biostrings BSgenome GenomicRanges IRanges seqLogo]; }; + rGREAT = derive2 { name="rGREAT"; version="1.26.0"; sha256="0kr61mhxp9phn1136fci450zwfhsipchmlm8d5rgib4lh0zbxrhl"; depends=[GenomicRanges GetoptLong IRanges RCurl rjson]; }; + rGenomeTracks = derive2 { name="rGenomeTracks"; version="1.0.0"; sha256="011bz3phc0fyzda3rbbmbazl3lrs8zs3pb9labxz223k5ihz010h"; depends=[imager reticulate rGenomeTracksData]; }; + rRDP = derive2 { name="rRDP"; version="1.28.0"; sha256="0vxazmvljk1sb00c0ir28l2m2c57yd27bd5ii5d5dq1f5jsjxr3d"; depends=[Biostrings]; }; + rSWeeP = derive2 { name="rSWeeP"; version="1.6.0"; sha256="0dvvymh9am32ja7jh5rn927gn6g83kcrycd8brajqzwblc7acyl7"; depends=[pracma]; }; + rScudo = derive2 { name="rScudo"; version="1.10.0"; sha256="15hbmgx016qiagbjgi59ddllrrl10zk5xnkkv1rbsm63agr0kq64"; depends=[Biobase BiocGenerics igraph S4Vectors stringr SummarizedExperiment]; }; + rTRM = derive2 { name="rTRM"; version="1.32.0"; sha256="1gsg8vfrrjhhlgcwxi1qlyd2yyvbf0nigswa11s0was2bah6cai6"; depends=[AnnotationDbi DBI igraph RSQLite]; }; + rTRMui = derive2 { name="rTRMui"; version="1.32.0"; sha256="1pd8jrvfl6lvfz6bjzsna9mkdv1yryabssgq4ych0x3hhw5m1inr"; depends=[MotifDb org_Hs_eg_db org_Mm_eg_db rTRM shiny]; }; + rWikiPathways = derive2 { name="rWikiPathways"; version="1.14.0"; sha256="1731icc36xnb76qmfk7jyyhalaf433dwr1q93m7jah36chr6x7p4"; depends=[data_table httr RCurl rjson tidyr XML]; }; + rain = derive2 { name="rain"; version="1.28.0"; sha256="0pykkqqw8mrkg71bkrhwz24fzk806hd61p8c65mxx254f4n63x5a"; depends=[gmp multtest]; }; + rama = derive2 { name="rama"; version="1.68.0"; sha256="1iq9xdbnl0p44cbngj1nj620fkd76xk2k6iyn1361iz1l9qdhf9l"; depends=[]; }; + ramr = derive2 { name="ramr"; version="1.2.0"; sha256="1prg1ds143kd5vqxkv1bxsp3b6mc0sx32wc702581fl995isrssm"; depends=[BiocGenerics doParallel doRNG EnvStats ExtDist foreach GenomicRanges ggplot2 IRanges matrixStats reshape2 S4Vectors]; }; + ramwas = derive2 { name="ramwas"; version="1.18.0"; sha256="164gcl1qk0rhi6acmx0rmmnxp8b6f76b2fr6w1mq5n65vk74ba72"; depends=[BiocGenerics biomaRt Biostrings digest filematrix GenomicAlignments glmnet KernSmooth Rsamtools]; }; + randPack = derive2 { name="randPack"; version="1.40.0"; sha256="1r3vcbjsrlsyl6j4mxiwj20j9lz7frzmq7mp0qj2jgf4xb0ifkw3"; depends=[Biobase]; }; + randRotation = derive2 { name="randRotation"; version="1.6.0"; sha256="17ldp80p2ch15sj3l66p4p5vdzh5l9xixrzp204crk54fjwwykrq"; depends=[Rdpack]; }; + rawrr = derive2 { name="rawrr"; version="1.2.0"; sha256="096pqk7njbhvrms9f6m2cyb88rc5mji7aadwvql3ir7bxx0zd2rp"; depends=[]; }; + rbsurv = derive2 { name="rbsurv"; version="2.52.0"; sha256="0arsfcdfk6b5llblw85dl5q7hj3cpwiybkavmav0175hmn34svcb"; depends=[Biobase survival]; }; + rcellminer = derive2 { name="rcellminer"; version="2.16.0"; sha256="0rlkm4pnwkrbj8jqqp7zyc19slsly6pmfzxm6v2bg43nhirmh658"; depends=[Biobase ggplot2 gplots rcellminerData shiny stringr]; }; + rebook = derive2 { name="rebook"; version="1.4.0"; sha256="1mfshchsr5my1z91q0rg31g8dk1izxjrz6ffq8iiq9w1fwgjzfkx"; depends=[BiocStyle CodeDepends dir_expiry filelock knitr rmarkdown]; }; + receptLoss = derive2 { name="receptLoss"; version="1.6.0"; sha256="19spz99d6d3ba7fnkmkkqb5nphn39hjq9gmyv7zlsvc8rgxz19k1"; depends=[dplyr ggplot2 magrittr SummarizedExperiment tidyr]; }; + reconsi = derive2 { name="reconsi"; version="1.6.0"; sha256="0djiq9l70wvicbqia14n1bbd9c7ykvsyrp0r2arw2b2pqh8281fh"; depends=[ggplot2 KernSmooth matrixStats phyloseq reshape2]; }; + recount = derive2 { name="recount"; version="1.20.0"; sha256="1maa0fi6dqkcsjlbm52gl0r37qcv951xrc6m4rc6fvp6cb83x68p"; depends=[BiocParallel derfinder downloader GenomeInfoDb GenomicRanges GEOquery IRanges RCurl rentrez rtracklayer S4Vectors SummarizedExperiment]; }; + recount3 = derive2 { name="recount3"; version="1.4.0"; sha256="0ciaab6q0pix7zhz7948b8w3qki8dfy9lpa0wffhqjr7fvfh2km2"; depends=[BiocFileCache data_table GenomicRanges Matrix R_utils RCurl rtracklayer S4Vectors sessioninfo SummarizedExperiment]; }; + recountmethylation = derive2 { name="recountmethylation"; version="1.4.0"; sha256="14b06842a97q9cggz6l7kfrlal1kaiq49j2f8sql4b2p6qdh4dpn"; depends=[BiocFileCache HDF5Array minfi R_utils RCurl rhdf5 S4Vectors]; }; + recoup = derive2 { name="recoup"; version="1.22.0"; sha256="00qxkjjb4bx6vak50jjpl2l9y7myri9x7m17h01j2v2cncg48s55"; depends=[BiocGenerics biomaRt Biostrings circlize ComplexHeatmap GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 httr IRanges Rsamtools RSQLite rtracklayer S4Vectors stringr]; }; + regionReport = derive2 { name="regionReport"; version="1.27.1"; sha256="0nf77g6x67dakbb3i55d65rcma4nya8lkjm5d8wbpq7hhvfhy2p1"; depends=[BiocStyle DEFormats derfinder DESeq2 GenomeInfoDb GenomicRanges knitr knitrBootstrap RefManageR rmarkdown S4Vectors SummarizedExperiment]; }; + regioneR = derive2 { name="regioneR"; version="1.26.0"; sha256="0y1mawzfvxrympc47q3isk96sl9d1bc8kdsxpm8rnhqg5bmgwya6"; depends=[Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges memoise rtracklayer S4Vectors]; }; + regsplice = derive2 { name="regsplice"; version="1.20.0"; sha256="1vm1vvi5gfw5ssyi0qng3jmanvyl2mx08w9bi5990pj0j6ycc70y"; depends=[edgeR glmnet limma pbapply S4Vectors SummarizedExperiment]; }; + regutools = derive2 { name="regutools"; version="1.6.0"; sha256="03gjlpn1pk2xkcbg4i1az505nq2gi6ajplq3asbg1fl9p2dbw8kh"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings DBI GenomicRanges Gviz IRanges RCy3 RSQLite S4Vectors]; }; + restfulSE = derive2 { name="restfulSE"; version="1.16.0"; sha256="118zmj9jhgblkgi1arwndrigc1gl37q6gydhw3xfdiml4lp2zags"; depends=[AnnotationDbi AnnotationHub bigrquery Biobase DBI DelayedArray dplyr ExperimentHub GO_db magrittr reshape2 rhdf5client rlang S4Vectors SummarizedExperiment]; }; + rexposome = derive2 { name="rexposome"; version="1.16.0"; sha256="05p77f6w9qq9k3yqxm5xlmlir5pqinb9h8adn1xjfh01d9pagsmc"; depends=[Biobase circlize corrplot FactoMineR ggplot2 ggrepel glmnet gplots gridExtra gtools Hmisc imputeLCMD lme4 lsr mice pryr reshape2 S4Vectors scales scatterplot3d stringr]; }; + rfPred = derive2 { name="rfPred"; version="1.32.0"; sha256="12ppidpn8piw1w450nm35qxzfgyki4ihvp7cri8qk9gipvd3kq9z"; depends=[data_table GenomicRanges IRanges Rsamtools]; }; + rfaRm = derive2 { name="rfaRm"; version="1.6.0"; sha256="095p3nsax57m74j4dj7klpwkl8w2326c9yhc8s0c236kwyszz9rv"; depends=[Biostrings data_table httr IRanges magick rsvg rvest S4Vectors stringi xml2]; }; + rgsepd = derive2 { name="rgsepd"; version="1.26.0"; sha256="149065kmlzdzb9bjwm7x5y3l5j1y7qxzh8xz5liicz5rc4s7pb4i"; depends=[AnnotationDbi biomaRt DESeq2 GO_db goseq gplots hash org_Hs_eg_db SummarizedExperiment]; }; + rhdf5 = derive2 { name="rhdf5"; version="2.38.0"; sha256="13zm993l3i9f98gqdpxgsrzf9fgqppx2ajvrl0i3f7cvpifcgxqg"; depends=[rhdf5filters Rhdf5lib]; }; + rhdf5client = derive2 { name="rhdf5client"; version="1.16.0"; sha256="1pbgjhcqilr1kzx3a5m4113p6alcr30z1mdd33qqllcarnc0pf4n"; depends=[DelayedArray httr R6 rjson S4Vectors]; }; + rhdf5filters = derive2 { name="rhdf5filters"; version="1.6.0"; sha256="05b015pyp3g1crmm2d3ldsa7r5w0khmf87qbl4fv16r6pdggha78"; depends=[Rhdf5lib]; }; + riboSeqR = derive2 { name="riboSeqR"; version="1.28.0"; sha256="0nnhjvjl4c9yyfzjf8kcj4yky5cdimicp7lz008sczy19jq4vjhd"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools seqLogo]; }; + ribor = derive2 { name="ribor"; version="1.6.0"; sha256="0g6z3rlmf3i6w3j0dldycz9k8jbg3d2ilv319270515j0lmmdngc"; depends=[dplyr ggplot2 hash rhdf5 rlang S4Vectors tidyr yaml]; }; + ribosomeProfilingQC = derive2 { name="ribosomeProfilingQC"; version="1.6.0"; sha256="18ix3mp725vmmd1a4jvl9ayby1pjn1pir54a42aflbb8bq0g46rz"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome cluster EDASeq GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggfittext ggplot2 ggrepel IRanges motifStack Rsamtools Rsubread rtracklayer RUVSeq S4Vectors scales XVector]; }; + rmelting = derive2 { name="rmelting"; version="1.10.0"; sha256="0jhlwnllp6zpi5prd9g51c1czi994jvky3f2v84p9hvgf91xf5f8"; depends=[Rdpack rJava]; }; + rmspc = derive2 { name="rmspc"; version="1.0.0"; sha256="1fszm50s87xafddspwl6cjg8gbp7mvd16w6ajz8fy0wlc4x5qia3"; depends=[BiocManager GenomicRanges processx rtracklayer stringr]; }; + rnaEditr = derive2 { name="rnaEditr"; version="1.4.0"; sha256="0hs3g7cr6c8gcvg1svv88r4h68364gfnqsmdjc6llwg2l1j36a8w"; depends=[BiocGenerics bumphunter corrplot GenomeInfoDb GenomicRanges IRanges logistf plyr S4Vectors survival]; }; + rnaseqcomp = derive2 { name="rnaseqcomp"; version="1.24.0"; sha256="0asx51fxg9hc0brbqlxl0jyfyidh4fbwyclrvczzzqasf277f23w"; depends=[RColorBrewer]; }; + roar = derive2 { name="roar"; version="1.30.0"; sha256="0hqh4vsnxl2sn1bf6s6wxl2nskb40rhvrysdvb6dr60zkih3g347"; depends=[BiocGenerics GenomeInfoDb GenomicAlignments GenomicRanges IRanges rtracklayer S4Vectors SummarizedExperiment]; }; + rols = derive2 { name="rols"; version="2.22.0"; sha256="08asfjl6smdg05m41m0bdc2awiqbhyb016z9f77adx3vc73mh613"; depends=[Biobase BiocGenerics httr jsonlite progress]; }; + ropls = derive2 { name="ropls"; version="1.26.0"; sha256="0mz5lrdsihx66sgx9klnvpxvw1mjjcbijcsdbgxwaimzl9k1kr05"; depends=[Biobase MultiDataSet]; }; + rpx = derive2 { name="rpx"; version="2.1.12"; sha256="0ykafx304g8gdry2r1l91zbnr6zv7jkknjyv5p0dkf0wvpqy82iy"; depends=[BiocFileCache curl jsonlite RCurl xml2]; }; + rqt = derive2 { name="rqt"; version="1.19.0"; sha256="0skdk1jd3hcamh21s5nr3b5g5b4wki8y99zj7xkyg4nrdki6853i"; depends=[car CompQuadForm glmnet Matrix metap pls ropls RUnit SummarizedExperiment]; }; + rqubic = derive2 { name="rqubic"; version="1.40.0"; sha256="0drzggalrvijqvq2x38r2l07rr2248rrw8lvhnfkszabb5qg4a71"; depends=[biclust Biobase BiocGenerics]; }; + rrvgo = derive2 { name="rrvgo"; version="1.6.0"; sha256="0sxybvvbgrxpddfr80cla6pmf8q3kiqrd9r9ca0hq8m4av9nv9cc"; depends=[AnnotationDbi ggplot2 ggrepel GO_db GOSemSim pheatmap shiny tm treemap wordcloud]; }; + rsbml = derive2 { name="rsbml"; version="2.52.0"; sha256="0mdyr637sgasc156cv8i2s2mpl1hdvilfwwkhvw7l95pl90gnsh2"; depends=[BiocGenerics graph]; }; + rsemmed = derive2 { name="rsemmed"; version="1.4.0"; sha256="00m9g6jrn21cs3wsrblimla3mwrd3y4y4drm4zl1x0xkz1f14r8f"; depends=[dplyr igraph magrittr stringr]; }; + rtracklayer = derive2 { name="rtracklayer"; version="1.54.0"; sha256="11bh9khra2qdmicppi6ya43kf8f1z13ak92vkl6nr5f20k54cphc"; depends=[BiocGenerics BiocIO Biostrings GenomeInfoDb GenomicAlignments GenomicRanges IRanges RCurl restfulr Rsamtools S4Vectors XML XVector zlibbioc]; }; + runibic = derive2 { name="runibic"; version="1.16.0"; sha256="0faqxqqgk0x7w87ck7xpjs1ppzd0g2hnxpssf55jq6qq9n4kvvi5"; depends=[biclust Rcpp SummarizedExperiment testthat]; }; + sRACIPE = derive2 { name="sRACIPE"; version="1.10.0"; sha256="0mqg5f7l299dqc2y2fww21i76lb9685wckrcvjaxg80qsgc1s3r1"; depends=[BiocGenerics ggplot2 gplots gridExtra htmlwidgets MASS RColorBrewer Rcpp reshape2 S4Vectors SummarizedExperiment umap visNetwork]; }; + sSeq = derive2 { name="sSeq"; version="1.32.0"; sha256="0b2f66qh9ysdgmvzma62806scmpwz2qblbdy89pqfbyzkqprg9zk"; depends=[caTools RColorBrewer]; }; + safe = derive2 { name="safe"; version="3.34.0"; sha256="139kaqd6c8sblpki63ncamx8n9dx1n660w7jzik8b6khgwz1jbj6"; depends=[AnnotationDbi Biobase SparseM]; }; + sagenhaft = derive2 { name="sagenhaft"; version="1.64.0"; sha256="110xg6kagap9795saxmh1dl77r4c2gzmk49rvqjlwqvbifnn4mvw"; depends=[SparseM]; }; + sampleClassifier = derive2 { name="sampleClassifier"; version="1.18.0"; sha256="1plsyjjbjrjq1mydv19lsv0alq98vr2132c3m9j0w4akvs7zcv6q"; depends=[annotate e1071 ggplot2 MGFM MGFR]; }; + sangeranalyseR = derive2 { name="sangeranalyseR"; version="1.4.0"; sha256="14bmz98rhpnkdqxkq67qvzkyld1a56h3y8kvjnhz5hzw8q1aihyd"; depends=[ape BiocStyle Biostrings data_table DECIPHER DT excelR ggdendro gridExtra knitr logger openxlsx phangorn plotly reshape2 rmarkdown sangerseqR seqinr shiny shinycssloaders shinydashboard shinyjs shinyWidgets stringr zeallot]; }; + sangerseqR = derive2 { name="sangerseqR"; version="1.30.0"; sha256="0j0hzpcsz9z04yf6jp26xscp62slgx4i4i33f6s1ajbgx00sq70n"; depends=[Biostrings shiny]; }; + sarks = derive2 { name="sarks"; version="1.6.0"; sha256="026px0b7cbfvf7zqcm2p1y00hna1wgpyfr4bkirwrbmskb7f32lp"; depends=[binom Biostrings cluster IRanges rJava]; }; + satuRn = derive2 { name="satuRn"; version="1.2.0"; sha256="1i2prsjxf6h0ynkcx4g1sj0mpb3v9rm6hwb9ppha2p86ffqxvrjn"; depends=[BiocParallel boot ggplot2 limma locfdr Matrix pbapply SummarizedExperiment]; }; + savR = derive2 { name="savR"; version="1.32.0"; sha256="0dwl94j5dm5ngn8lyyc4bd9ihd1nqincvq26najjn6lw0x55ciky"; depends=[ggplot2 gridExtra reshape2 scales XML]; }; + scAlign = derive2 { name="scAlign"; version="1.8.0"; sha256="10bq2jalmyhw3f2vg1sjrlg5czap9w453aga68vgxbp3j04342sp"; depends=[FNN ggplot2 irlba purrr Rtsne Seurat SingleCellExperiment tensorflow]; }; + scAnnotatR = derive2 { name="scAnnotatR"; version="1.0.0"; sha256="08jq04ckjw8a5y753almc5bl8vnn4j6qp2zb7bb9w3ql3ddy7b21"; depends=[AnnotationHub ape caret data_tree dplyr e1071 ggplot2 kernlab pROC ROCR Seurat SingleCellExperiment SummarizedExperiment]; }; + scBFA = derive2 { name="scBFA"; version="1.8.0"; sha256="0fq7c9gd4ybcw9d3gw21hrnw2r94mamiimn2d50c23wdk31rsgy8"; depends=[copula DESeq2 ggplot2 MASS Matrix Seurat SingleCellExperiment SummarizedExperiment zinbwave]; }; + scCB2 = derive2 { name="scCB2"; version="1.4.0"; sha256="1pxfs9k4lfk3bfy9b6hls5dqrhbgc6z9j0ndyw67zhzgzpj333r0"; depends=[doParallel DropletUtils edgeR foreach iterators Matrix rhdf5 Seurat SingleCellExperiment SummarizedExperiment]; }; + scClassifR = derive2 { name="scClassifR"; version="1.2.0"; sha256="0p9l9q5ina0axrqvqn1y5wkfqi0nacxm3nm6ny34j53znv07b2zz"; depends=[ape caret data_tree dplyr e1071 ggplot2 kernlab pROC ROCR Seurat SingleCellExperiment SummarizedExperiment]; }; + scClassify = derive2 { name="scClassify"; version="1.6.0"; sha256="1aln1i29xj1p5gscxnfg0lcva2sr8pyf51r39bpagc83n5df4rw0"; depends=[BiocParallel Cepo cluster diptest ggplot2 ggraph hopach igraph limma Matrix mgcv minpack_lm mixtools proxy proxyC S4Vectors statmod]; }; + scDD = derive2 { name="scDD"; version="1.18.0"; sha256="0gjdjkpkm9zc9hzzb6r2mknl4zyg7s2lgqppmzzhgcnvlmgvm5b5"; depends=[arm BiocParallel EBSeq fields ggplot2 mclust outliers S4Vectors scran SingleCellExperiment SummarizedExperiment]; }; + scDataviz = derive2 { name="scDataviz"; version="1.4.0"; sha256="10q9xzaq27l1s4n8iavriv83y8sgblp3shkswr9cfks2siyxa27k"; depends=[corrplot flowCore ggplot2 ggrepel MASS matrixStats RColorBrewer reshape2 S4Vectors scales Seurat SingleCellExperiment umap]; }; + scDblFinder = derive2 { name="scDblFinder"; version="1.8.0"; sha256="0wzmmcsnjybgzbc5rn4i72n26j9n59dfy1zg8ij0q8p4276jplsd"; depends=[BiocGenerics BiocNeighbors BiocParallel BiocSingular bluster DelayedArray igraph MASS Matrix S4Vectors scater scran scuttle SingleCellExperiment SummarizedExperiment xgboost]; }; + scFeatureFilter = derive2 { name="scFeatureFilter"; version="1.14.0"; sha256="1yqj75fxvsbdk32z7swwgb9lxx496sxgxv471yvbxzmjwxzigxj1"; depends=[dplyr ggplot2 magrittr rlang tibble]; }; + scGPS = derive2 { name="scGPS"; version="1.8.0"; sha256="1k7g9lxp1n4ngm8z019p33vmb8y43hpwfvqdh514x1jh1ygcqbfj"; depends=[caret DESeq2 dplyr dynamicTreeCut fastcluster ggplot2 glmnet locfit Rcpp RcppArmadillo RcppParallel SingleCellExperiment SummarizedExperiment]; }; + scHOT = derive2 { name="scHOT"; version="1.6.0"; sha256="188qf2039g5jl6vbq1xarzx9n065nb5pqxmkh764q8cz60ic3s2s"; depends=[BiocParallel ggforce ggplot2 igraph IRanges Matrix reshape S4Vectors SingleCellExperiment SummarizedExperiment]; }; + scMAGeCK = derive2 { name="scMAGeCK"; version="1.6.0"; sha256="1vx90l5d010dp6snasvaymlh16w5law19shdz0fhg3ngkc1v9jg0"; depends=[ggplot2 Seurat]; }; + scMerge = derive2 { name="scMerge"; version="1.10.0"; sha256="031wlfilcagl3mq14yqybz2z7r0l420p5v8f128f841lmhqclg55"; depends=[BiocParallel BiocSingular cluster DelayedArray DelayedMatrixStats distr igraph M3Drop pdist proxy ruv S4Vectors SingleCellExperiment SummarizedExperiment]; }; + scPCA = derive2 { name="scPCA"; version="1.8.0"; sha256="1qgb03c446yv1zkzgiin05vlj7njlz3krvwj183s9y43d95mfny1"; depends=[assertthat BiocParallel cluster coop DelayedArray dplyr elasticnet kernlab Matrix MatrixGenerics matrixStats origami purrr Rdpack RSpectra ScaledMatrix sparsepca stringr tibble]; }; + scPipe = derive2 { name="scPipe"; version="1.16.0"; sha256="0ckl6crm5rx53dlbbx0b4bfkllr5krai2bnxq5r5yqffv9p7n6mi"; depends=[AnnotationDbi BiocGenerics biomaRt dplyr GenomicRanges GGally ggplot2 glue hash magrittr MASS mclust org_Hs_eg_db org_Mm_eg_db Rcpp reshape Rhtslib rlang robustbase rtracklayer S4Vectors scales scater SingleCellExperiment stringr SummarizedExperiment testthat zlibbioc]; }; + scReClassify = derive2 { name="scReClassify"; version="1.0.0"; sha256="0v2cz8h18p3q6a437db1z1ca85j7yrpz9sg7418q2hdv74wd645c"; depends=[e1071 randomForest SingleCellExperiment SummarizedExperiment]; }; + scRecover = derive2 { name="scRecover"; version="1.10.0"; sha256="0x8hlbjhf9jfin075sikc7gpl9qbpppcvhy3rd4cgy1nzq6dqwq1"; depends=[bbmle BiocParallel doParallel foreach gamlss kernlab MASS Matrix penalized preseqR pscl Rmagic rsvd SAVER]; }; + scRepertoire = derive2 { name="scRepertoire"; version="1.4.0"; sha256="17il73lv0pxbqaza21i0fg5zh2v3jf7n30nwngi1jqics4l5ahsl"; depends=[doParallel dplyr ggalluvial ggplot2 igraph plyr powerTCR reshape2 rlang SeuratObject stringdist stringr SummarizedExperiment vegan]; }; + scShapes = derive2 { name="scShapes"; version="1.0.0"; sha256="0bzbib3y454dmv6ifg65pynr7v07g29r391k8p8v97v53jzdjd38"; depends=[BiocParallel dgof emdbook magrittr MASS Matrix pscl VGAM]; }; + scTGIF = derive2 { name="scTGIF"; version="1.8.0"; sha256="0nsi00rbf9qmzyqkvgr4ga4ci4cy558hh4spaab49njs8vz9svvc"; depends=[Biobase BiocStyle ggplot2 GSEABase igraph knitr msigdbr nnTensor plotly RColorBrewer Rcpp rmarkdown S4Vectors scales schex SingleCellExperiment SummarizedExperiment tagcloud tibble]; }; + scTHI = derive2 { name="scTHI"; version="1.6.0"; sha256="0szqnwh3z45dq33iyiv7mnh6hbc561b88i0hvxffjfnfk99i34zl"; depends=[BiocParallel Rtsne]; }; + scTensor = derive2 { name="scTensor"; version="2.4.0"; sha256="07xh07lc2jvi5rb73dbbfynskr6gd7x7amxz3xiqypilnwpg69y2"; depends=[abind AnnotationDbi AnnotationHub BiocManager BiocStyle Category ccTensor checkmate crayon DOSE ggplot2 GOstats heatmaply igraph knitr MeSHDbi meshr nnTensor outliers plotly plotrix reactome_db ReactomePA rmarkdown RSQLite rTensor S4Vectors schex SingleCellExperiment SummarizedExperiment tagcloud visNetwork]; }; + scTreeViz = derive2 { name="scTreeViz"; version="1.0.0"; sha256="0m2g4x1gpwh4y4hm708a4nrwqsx9isy1pn84327yzk9f4yn7jmkg"; depends=[clustree data_table digest epivizr epivizrData epivizrServer ggplot2 ggraph httr igraph Matrix Rtsne S4Vectors scater scran Seurat SingleCellExperiment SummarizedExperiment sys]; }; + scanMiR = derive2 { name="scanMiR"; version="1.0.0"; sha256="1yk3l04w76sracwra8r6wam8j45h5hlhgy638wsmnhsnbnc8d923"; depends=[BiocParallel Biostrings data_table GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges S4Vectors seqLogo stringi]; }; + scanMiRApp = derive2 { name="scanMiRApp"; version="1.0.0"; sha256="1vdsx4ryjr7ifh9zy9jh05z5rg8b7ffvknqniwqsnlryyskm978h"; depends=[AnnotationDbi AnnotationFilter AnnotationHub BiocParallel Biostrings data_table digest DT ensembldb fst GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 htmlwidgets IRanges Matrix plotly rintrojs rtracklayer S4Vectors scanMiR scanMiRData shiny shinycssloaders shinydashboard waiter]; }; + scater = derive2 { name="scater"; version="1.22.0"; sha256="0k4i9pwmwxcr5a40ljl27wriccwn5vc52xy48yjjh8ppl5dbggdg"; depends=[beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats ggbeeswarm ggplot2 ggrepel gridExtra Matrix RColorBrewer rlang Rtsne S4Vectors scuttle SingleCellExperiment SummarizedExperiment viridis]; }; + scatterHatch = derive2 { name="scatterHatch"; version="1.0.0"; sha256="1ldrfkk0m00xkkg6zm6cd3i3avpnpfxa6mpjrgajwxh3xyip8lh5"; depends=[ggplot2 plyr spatstat_geom]; }; + scde = derive2 { name="scde"; version="2.22.0"; sha256="1hqpx7j5j36h7fsckdc76lfig9afcm4q7k0cpp0zzivvsi6kvc2b"; depends=[BiocParallel Cairo edgeR extRemes flexmix MASS mgcv nnet pcaMethods quantreg RColorBrewer Rcpp RcppArmadillo rjson RMTstat Rook]; }; + scds = derive2 { name="scds"; version="1.10.0"; sha256="1n7nakndvkk26wpriqfysb89npj539xpqnp6j3szxcpd0r6dd37n"; depends=[dplyr Matrix pROC S4Vectors SingleCellExperiment SummarizedExperiment xgboost]; }; + schex = derive2 { name="schex"; version="1.8.0"; sha256="18w36xc11myq2yh086530ga9f841nx7lqaafrh0zyzc6jvi0flql"; depends=[cluster concaveman dplyr entropy ggforce ggplot2 hexbin scales Seurat shiny SingleCellExperiment]; }; + scmap = derive2 { name="scmap"; version="1.16.0"; sha256="0kdkp4ys1hq1y1dh539qymji38cfs44kpkhm4wc5na3wgxxq52y8"; depends=[Biobase BiocGenerics dplyr e1071 ggplot2 googleVis matrixStats proxy randomForest Rcpp RcppArmadillo reshape2 S4Vectors SingleCellExperiment SummarizedExperiment]; }; + scmeth = derive2 { name="scmeth"; version="1.14.0"; sha256="0j6kyapwivpri92hssy8mk7dnzc19sd9chipkhdwbcmdxzpdx4hw"; depends=[AnnotationHub annotatr Biostrings BSgenome bsseq DelayedArray DT GenomeInfoDb GenomicRanges HDF5Array knitr reshape2 rmarkdown SummarizedExperiment]; }; + scone = derive2 { name="scone"; version="1.18.0"; sha256="1fqlwg195rzpwh35cj941vhmj2plzpn253skig6glr0z2sirr9r1"; depends=[aroma_light BiocParallel boot class cluster compositions diptest edgeR fpc gplots hexbin limma MatrixGenerics matrixStats mixtools rARPACK RColorBrewer rhdf5 RUVSeq SingleCellExperiment SummarizedExperiment]; }; + scoreInvHap = derive2 { name="scoreInvHap"; version="1.16.0"; sha256="1y8b8yw0d0b65pka31lfcbdr5knvmihx2shcww76613j3vkk1m77"; depends=[BiocParallel Biostrings GenomicRanges snpStats SummarizedExperiment VariantAnnotation]; }; + scp = derive2 { name="scp"; version="1.4.0"; sha256="1jjczmyihdbvrhv7n4qv58jm1wjw09axk6mixr2yd9fkhxkwc2fy"; depends=[dplyr magrittr matrixStats MsCoreUtils MultiAssayExperiment QFeatures rlang S4Vectors SingleCellExperiment SummarizedExperiment]; }; + scran = derive2 { name="scran"; version="1.22.0"; sha256="1nyvbss4914giwzp5wiw9g4z5b6lr5iprbjrqlg4vpgnf1hz8k7l"; depends=[beachmat BH BiocGenerics BiocParallel BiocSingular bluster DelayedArray DelayedMatrixStats dqrng edgeR igraph limma Matrix metapod Rcpp S4Vectors scuttle SingleCellExperiment statmod SummarizedExperiment]; }; + scruff = derive2 { name="scruff"; version="1.12.0"; sha256="133frf2s1r4zcv868q1br74fsssrvjvj4jh0zxfzvv44sp9q7mvp"; depends=[AnnotationDbi BiocGenerics BiocParallel Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 ggthemes plyr Rsamtools Rsubread rtracklayer S4Vectors scales ShortRead SingleCellExperiment stringdist SummarizedExperiment]; }; + scry = derive2 { name="scry"; version="1.6.0"; sha256="1qp40k5l6splpj4gqgsgx07ys63j8gixdycsjzkgmd13l7awhdf2"; depends=[BiocSingular DelayedArray glmpca HDF5Array Matrix SingleCellExperiment SummarizedExperiment]; }; + scuttle = derive2 { name="scuttle"; version="1.4.0"; sha256="1dbdb6yc6wk01dljy1vy6f0lf44crc5rxxnc4bhjk8i4iljz8467"; depends=[beachmat BiocGenerics BiocParallel DelayedArray DelayedMatrixStats GenomicRanges Matrix Rcpp S4Vectors SingleCellExperiment SummarizedExperiment]; }; + sechm = derive2 { name="sechm"; version="1.2.0"; sha256="0b6izkd276d57vxfi7iip26zkvm7dyd1sml9bh5gcfr1k50ylfiv"; depends=[circlize ComplexHeatmap randomcoloR S4Vectors seriation SummarizedExperiment]; }; + segmentSeq = derive2 { name="segmentSeq"; version="2.28.0"; sha256="1lfi8z39d08w8haga622ha6cqfcs6k80v1xg406l0cxz09qmwss2"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors ShortRead]; }; + segmenter = derive2 { name="segmenter"; version="1.0.0"; sha256="053s5qkqir3rxjxpi11q9vxxrrp5cv7awn2i2ns8p21zsqzvfis4"; depends=[bamsignals ChIPseeker chromhmmData ComplexHeatmap GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; + selectKSigs = derive2 { name="selectKSigs"; version="1.6.0"; sha256="03c1dm883vdm5cq4v0dp7kbglxvjljxls6hf7rqqaq7xbw6c9l33"; depends=[gtools HiLDA magrittr Rcpp]; }; + semisup = derive2 { name="semisup"; version="1.18.0"; sha256="0zjpcw04mrxg2c31cwbfiv1kymq9zpfmwwffjhq046fiikvkda51"; depends=[VGAM]; }; + seq2pathway = derive2 { name="seq2pathway"; version="1.26.0"; sha256="0r780ralqw02871ww4prm73g18wh6nxs0g0cck135kcmp1a9nbwr"; depends=[biomaRt GenomicRanges GSA nnet seq2pathway_data WGCNA]; }; + seqCAT = derive2 { name="seqCAT"; version="1.16.0"; sha256="1c63yp16rp1bfgrd6cxycwpgzglqm4hngbcr7gy4myxqqhsbrimi"; depends=[dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges rlang rtracklayer S4Vectors scales SummarizedExperiment tidyr VariantAnnotation]; }; + seqCNA = derive2 { name="seqCNA"; version="1.40.0"; sha256="1v8j1mm40r67ab5x38jzynrfmmlpfkwv7afrsr3zwcmxr3h2c7i3"; depends=[adehabitatLT doSNOW GLAD seqCNA_annot]; }; + seqLogo = derive2 { name="seqLogo"; version="1.60.0"; sha256="013hwj2lp29nqa8mkvm25aliarg0k725crg4cpsbj0iiskyrs6rl"; depends=[]; }; + seqPattern = derive2 { name="seqPattern"; version="1.26.0"; sha256="1mik575qaxw9h9qyjn971207pfgbc8p1mx60jrb20jbrrihgg2na"; depends=[Biostrings GenomicRanges IRanges KernSmooth plotrix]; }; + seqTools = derive2 { name="seqTools"; version="1.28.0"; sha256="1m8pxyq11bq4wz3w4n4ls5wf9ws2b7pazazv1d6icrrr9z3278ma"; depends=[zlibbioc]; }; + seqbias = derive2 { name="seqbias"; version="1.42.0"; sha256="1q608c1madij8l52ljl3w52vi3cssr6ikny84yj6n8s7yvpx5jpr"; depends=[Biostrings GenomicRanges Rhtslib]; }; + seqcombo = derive2 { name="seqcombo"; version="1.16.0"; sha256="0xyrjbvgrld5sy6g6sp79f43j93jnyccwg21il65fqrzb7z4d7xk"; depends=[Biostrings cowplot dplyr ggplot2 igraph magrittr yulab_utils]; }; + seqsetvis = derive2 { name="seqsetvis"; version="1.14.0"; sha256="053y3vxn7ndwx21d41k5xf6wki37kxlr4ghvfq1w2f9w7cc59yb7"; depends=[data_table eulerr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 ggplotify IRanges limma pbapply pbmcapply png RColorBrewer Rsamtools rtracklayer S4Vectors UpSetR]; }; + sesame = derive2 { name="sesame"; version="1.12.0"; sha256="06cmbbf62h7f3rv1ika6x3cpsd4mghi9wmv5a4gi1fasxh6h84y9"; depends=[BiocParallel DNAcopy e1071 fgsea GenomicRanges ggplot2 ggrepel illuminaio IRanges KernSmooth MASS matrixStats preprocessCore randomForest reshape2 S4Vectors sesameData stringr SummarizedExperiment tibble wheatmap]; }; + sevenC = derive2 { name="sevenC"; version="1.14.0"; sha256="06m6479ps7896zaks8jnnak8l7c6abbsdx56k3l5ir78681g4bq1"; depends=[BiocGenerics boot data_table GenomeInfoDb GenomicRanges InteractionSet IRanges purrr readr rtracklayer S4Vectors]; }; + sevenbridges = derive2 { name="sevenbridges"; version="1.24.0"; sha256="03p7p1mwa3m8zvyz5761xmqhch6cfgy42cv0swwgj0n9jr83sc23"; depends=[curl data_table docopt httr jsonlite objectProperties S4Vectors stringr uuid yaml]; }; + shinyMethyl = derive2 { name="shinyMethyl"; version="1.30.0"; sha256="0ihs4l4r46qyv7j8a2g590x86y0dwki2gzllwq2a31il34jrbgq5"; depends=[BiocGenerics IlluminaHumanMethylation450kmanifest matrixStats minfi RColorBrewer shiny]; }; + shinyepico = derive2 { name="shinyepico"; version="1.2.0"; sha256="1bfzvg46j52lmlf3jjbnd14bn6wmmrksh2adhgh436ywqdrnwygd"; depends=[data_table doParallel dplyr DT foreach GenomicRanges ggplot2 gplots heatmaply limma minfi plotly reshape2 rlang rmarkdown rtracklayer shiny shinycssloaders shinyjs shinythemes shinyWidgets statmod tidyr zip]; }; + sigFeature = derive2 { name="sigFeature"; version="1.12.0"; sha256="0xrg1pxygqsbsh9hgnyhakasds9wvj0rix3a7zhhgrix016gy2kg"; depends=[BiocParallel biocViews e1071 Matrix nlme openxlsx pheatmap RColorBrewer SparseM SummarizedExperiment]; }; + sigPathway = derive2 { name="sigPathway"; version="1.62.0"; sha256="1c46m1gbgiygcj8m65h8iwzk3fkp6nynd6rk1f5qdh7kw5ap28f9"; depends=[]; }; + siggenes = derive2 { name="siggenes"; version="1.68.0"; sha256="1fymp5ci1nwkk5yfj7hli464xqvvlvzf2a5j0w3qkxly9hrymix9"; depends=[Biobase multtest scrime]; }; + sights = derive2 { name="sights"; version="1.20.0"; sha256="03xfiwbxbj4nbbdd8cwgqb84gsp0zrlqz4qgz22rhjfm1gxg38j9"; depends=[ggplot2 lattice MASS qvalue reshape2]; }; + signatureSearch = derive2 { name="signatureSearch"; version="1.8.0"; sha256="0vpz446qrdbq4b8rmxjkraffrn2zwx529xs32ddkvfsh3bcgqh05"; depends=[AnnotationDbi BiocGenerics BiocParallel clusterProfiler data_table DelayedArray DOSE dplyr ExperimentHub fastmatch fgsea ggplot2 GSEABase HDF5Array magrittr Matrix qvalue Rcpp reactome_db readr reshape2 rhdf5 RSQLite scales SummarizedExperiment visNetwork]; }; + signeR = derive2 { name="signeR"; version="1.20.0"; sha256="1wsh5ik046baq0bsdy5i8f6vf10x2xyxqkmixp2f81nk0cwxxq1y"; depends=[BiocGenerics Biostrings class GenomeInfoDb GenomicRanges IRanges nloptr NMF PMCMRplus Rcpp RcppArmadillo VariantAnnotation]; }; + sigsquared = derive2 { name="sigsquared"; version="1.26.0"; sha256="1l2p7psmaxff8b63mk59492dr4s0pmr2lnjp32gqs0a7g3s8ry9f"; depends=[Biobase survival]; }; + similaRpeak = derive2 { name="similaRpeak"; version="1.26.0"; sha256="19d4qfk2qx5jmrfyr929lfwfa9a4b1n65aiclqhfiz9nwh2i6zgf"; depends=[R6]; }; + simplifyEnrichment = derive2 { name="simplifyEnrichment"; version="1.4.0"; sha256="05d9yjd8s7q1q78qmnx5xfrz9ppswc2cpfmjj47d338w783lwk98"; depends=[AnnotationDbi BiocGenerics circlize clue cluster ComplexHeatmap digest GetoptLong GO_db GOSemSim Matrix org_Hs_eg_db proxyC slam tm]; }; + sincell = derive2 { name="sincell"; version="1.26.0"; sha256="0yc6a90pqvs9yrhd6vllbdakrq1vly500x2kv68yxk2lzj4magwp"; depends=[cluster entropy fastICA fields ggplot2 igraph MASS proxy Rcpp reshape2 Rtsne scatterplot3d statmod TSP]; }; + singleCellTK = derive2 { name="singleCellTK"; version="2.4.0"; sha256="1a3j012jgysfbrknv1pp1az0zsk48yj1sjcjjchakl6lm7anzvhz"; depends=[AnnotationDbi ape batchelor Biobase BiocParallel celda celldex circlize cluster colorspace colourpicker ComplexHeatmap cowplot data_table DelayedArray DelayedMatrixStats DESeq2 dplyr DropletUtils DT enrichR ExperimentHub fields fishpond ggplot2 ggplotify ggrepel ggtree gridExtra GSEABase GSVA GSVAdata igraph KernSmooth limma magrittr MAST Matrix matrixStats metap msigdbr multtest plotly R_utils RColorBrewer reshape2 reticulate rlang rmarkdown ROCR Rtsne S4Vectors scater scDblFinder scds scMerge scran scRNAseq Seurat shiny shinyalert shinycssloaders shinyjs SingleCellExperiment SingleR SummarizedExperiment sva TENxPBMCData tibble tximport VAM withr yaml zinbwave]; }; + singscore = derive2 { name="singscore"; version="1.14.0"; sha256="1mmp0sgx684d1yxpminllzb6pnl66jlrqhxifvv7g5iivqqsrm2p"; depends=[Biobase BiocParallel edgeR ggplot2 ggrepel GSEABase magrittr matrixStats plotly plyr RColorBrewer reshape reshape2 S4Vectors SummarizedExperiment tidyr]; }; + sitadela = derive2 { name="sitadela"; version="1.2.0"; sha256="14r07kxj0fy1i2zmm1v8i7cwx5ff14xlmg5cdrjyzi6zws09vdp8"; depends=[Biobase BiocGenerics biomaRt Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges Rsamtools RSQLite rtracklayer S4Vectors]; }; + sitePath = derive2 { name="sitePath"; version="1.10.0"; sha256="063nry7xxnic984qm29axki5rrp2dmp7kgdcjkvh8bi6y41a58sj"; depends=[ape aplot ggplot2 ggrepel ggtree gridExtra RColorBrewer Rcpp seqinr tidytree]; }; + sizepower = derive2 { name="sizepower"; version="1.64.0"; sha256="1jcv4hy4gq5javqvdla122d36m3gfpwwa5qv5d21fh2s90ycm3rm"; depends=[]; }; + skewr = derive2 { name="skewr"; version="1.26.0"; sha256="10mfb1yklns9zhy3p9gxxdk3gihlszynilb8b20gb7522yrd124x"; depends=[IlluminaHumanMethylation450kmanifest methylumi minfi mixsmsn RColorBrewer S4Vectors wateRmelon]; }; + slalom = derive2 { name="slalom"; version="1.16.0"; sha256="130qqbm63iwymwk0lwlp8sns62853l1fabij7iy30ax8hgi681kc"; depends=[BH ggplot2 GSEABase Rcpp RcppArmadillo rsvd SingleCellExperiment SummarizedExperiment]; }; + slingshot = derive2 { name="slingshot"; version="2.2.0"; sha256="081kp9b0lpw2xq9xvd2kykqqrqcj322mp7xa44xc3kf0nzsivqfa"; depends=[igraph matrixStats princurve S4Vectors SingleCellExperiment SummarizedExperiment TrajectoryUtils]; }; + slinky = derive2 { name="slinky"; version="1.12.0"; sha256="05ywydvyz3jnzbhabhz1sd61hpy9nb22512zpbi48mv5wic1sv3v"; depends=[curl dplyr foreach httr jsonlite readr rhdf5 SummarizedExperiment tidyr]; }; + snapCGH = derive2 { name="snapCGH"; version="1.64.0"; sha256="0awvdv4a8ranhvk2an28lnpf8ygsxczg8bgx75fsa4xprp2ij31r"; depends=[aCGH cluster DNAcopy GLAD limma tilingArray]; }; + snapcount = derive2 { name="snapcount"; version="1.6.0"; sha256="0maq6s85h1cx03xp9a89gsq8hd9mgx36q384x0hgmsd1lgkm942d"; depends=[assertthat data_table GenomicRanges httr IRanges jsonlite magrittr Matrix purrr R6 rlang stringr SummarizedExperiment]; }; + snifter = derive2 { name="snifter"; version="1.4.0"; sha256="05fxd9d4qyn6qhnh4kwchr5dwb5d5hzy3yrkxszbnps1mnqfhyz9"; depends=[assertthat basilisk irlba reticulate]; }; + snm = derive2 { name="snm"; version="1.42.0"; sha256="03bpbsm43pv54mwsklyyjg3g17yflnxcza9bnbkbbbr6aicwihnb"; depends=[corpcor lme4]; }; + snpStats = derive2 { name="snpStats"; version="1.44.0"; sha256="0ha34b5cg26940xihgky45adns1nflrgq2qjq77w4bncxpaacsqq"; depends=[BiocGenerics Matrix survival zlibbioc]; }; + soGGi = derive2 { name="soGGi"; version="1.26.0"; sha256="1g2lsi8nqpi2vm284jv1ab3i9k03kwqsy9zf51vfnpqq31lrdlki"; depends=[BiocGenerics BiocParallel Biostrings chipseq GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges preprocessCore reshape2 Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; + sojourner = derive2 { name="sojourner"; version="1.8.0"; sha256="0ld1gh6vznmvd09xrza5xs93n3g0vf8zqymn58b23rilsrvm2cbc"; depends=[dplyr EBImage fitdistrplus ggplot2 gridExtra lattice MASS mclust minpack_lm mixtools mltools nls2 pixmap plyr R_matlab Rcpp reshape2 rlang sampSurf scales shiny shinyjs sp truncnorm]; }; + sparrow = derive2 { name="sparrow"; version="1.0.0"; sha256="1rn4mq2hkpn1902iy20vz7npqjjdzglmx0al3r98l3sshh8pqnxc"; depends=[babelgene BiocGenerics BiocParallel BiocSet checkmate circlize ComplexHeatmap data_table DelayedMatrixStats edgeR ggplot2 GSEABase irlba limma Matrix plotly viridis]; }; + sparseDOSSA = derive2 { name="sparseDOSSA"; version="1.18.0"; sha256="1rn8jv2b3fmyibgc6h91mhnl9nzqkds02pvj6vbq12pfvhhb021i"; depends=[MASS MCMCpack optparse tmvtnorm]; }; + sparseMatrixStats = derive2 { name="sparseMatrixStats"; version="1.6.0"; sha256="0ifqj4a6mn4749sr62gq3dwd6mmbbzdx5mh5b5663vcgl1kw96x1"; depends=[Matrix MatrixGenerics matrixStats Rcpp]; }; + sparsenetgls = derive2 { name="sparsenetgls"; version="1.12.0"; sha256="0g8vbzhzyccyi77x49c8idhwy357a2azywvllinjapgwiy88s02a"; depends=[glmnet huge MASS Matrix]; }; + spatialDE = derive2 { name="spatialDE"; version="1.0.0"; sha256="01dqrs8a23b0j5a0zk31g1ld5783dd6fsjiaj1vgc767mjwh0vsx"; depends=[basilisk checkmate ggplot2 ggrepel gridExtra Matrix reticulate S4Vectors scales SpatialExperiment SummarizedExperiment]; }; + spatialHeatmap = derive2 { name="spatialHeatmap"; version="2.0.0"; sha256="0a67dk5jvww8lrjqq8yxbqnm2lasjhypi1k16qa7gwd2x84phghf"; depends=[av BiocFileCache data_table DESeq2 distinct dynamicTreeCut edgeR flashClust genefilter ggdendro ggplot2 ggplotify gplots gridExtra grImport HDF5Array htmlwidgets igraph limma magick plotly rappdirs reshape2 rols rsvg S4Vectors shiny shinydashboard SummarizedExperiment UpSetR visNetwork WGCNA xml2 yaml]; }; + spatzie = derive2 { name="spatzie"; version="1.0.0"; sha256="1k88ibhm8k19i1jb1xsp6xqva8gdmgcp6gqmza7snh2hk5a4r9ll"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicFeatures GenomicInteractions GenomicRanges ggplot2 IRanges matrixStats motifmatchr S4Vectors SummarizedExperiment TFBSTools]; }; + specL = derive2 { name="specL"; version="1.28.0"; sha256="1fsv1vi7wghrn6xgkdfsr5c53jv1kfpxygzpvnc8pa37l6jfzdfg"; depends=[DBI protViz RSQLite seqinr]; }; + spicyR = derive2 { name="spicyR"; version="1.6.0"; sha256="1a7nidfa0vq7qbs5j1yl429q1adic8p3pagrvw3362b59j36ryxx"; depends=[BiocGenerics BiocParallel concaveman data_table dplyr ggplot2 IRanges lme4 lmerTest mgcv pheatmap rlang S4Vectors scam spatstat_core spatstat_geom tidyr]; }; + spikeLI = derive2 { name="spikeLI"; version="2.54.0"; sha256="1ndxvamn2q6ad86dfql1qa7c87xfg8q3zk6f33ip458ikmx16h3f"; depends=[]; }; + spiky = derive2 { name="spiky"; version="1.0.0"; sha256="0r8n6icjkhwaq395ikcw64wgks89s84a97xc8lwgrb4lkmnlkgyj"; depends=[bamlss Biostrings BlandAltmanLeh BSgenome GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges Rsamtools S4Vectors scales]; }; + spkTools = derive2 { name="spkTools"; version="1.50.0"; sha256="1fbh8lfhl3j7dgx7my3ajjfvzfl0x5rm3m0hszm9dk7zvn6zl67x"; depends=[Biobase gtools RColorBrewer]; }; + splatter = derive2 { name="splatter"; version="1.18.0"; sha256="0wxg4s7xragzd0ixav95jvc1ydizvnszgcvrzsn2fn9hmdi8bc2q"; depends=[BiocGenerics BiocParallel checkmate crayon edgeR fitdistrplus ggplot2 locfit matrixStats S4Vectors scales scater SingleCellExperiment SummarizedExperiment]; }; + splineTimeR = derive2 { name="splineTimeR"; version="1.22.0"; sha256="0pbfflicb2zpiddslivyh9i2vly6h8jfbmpm38ljijzshmsvra6v"; depends=[Biobase FIs GeneNet GSEABase gtools igraph limma longitudinal]; }; + splots = derive2 { name="splots"; version="1.60.0"; sha256="0ng1shqpjmgbfs4hlcfncq4ipl59a9xwv42h7zcc45hzm7013fq9"; depends=[RColorBrewer]; }; + spqn = derive2 { name="spqn"; version="1.6.0"; sha256="081b87w4gsrqp9ny9gqc85g4nm17kxrs2bagxgja280hf7ry2f08"; depends=[BiocGenerics ggplot2 ggridges matrixStats SummarizedExperiment]; }; + srnadiff = derive2 { name="srnadiff"; version="1.14.0"; sha256="075yvmdv4403za1cp0agcjq1lbnk3wa5b9cx2hjra1i26sgvvfxp"; depends=[baySeq BiocManager BiocParallel BiocStyle DESeq2 devtools edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Gviz IRanges Rcpp Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; + ssPATHS = derive2 { name="ssPATHS"; version="1.8.0"; sha256="1xl6vj0h0mh7xxyw8gfyb02zq6mvdi7yy6ssi50p1aq9ynlvpzwn"; depends=[dml MESS ROCR SummarizedExperiment]; }; + sscore = derive2 { name="sscore"; version="1.66.0"; sha256="0gmq40iikz71wrw3kppr14xmjyb1fg2kxcsldwqs3nhmrbcsmpxq"; depends=[affy affyio]; }; + sscu = derive2 { name="sscu"; version="2.24.0"; sha256="0ffcb5z1rwa2jmvdq1k9mq356fxh13vjrxmd7jbyz22sia02q2n0"; depends=[BiocGenerics Biostrings seqinr]; }; + ssize = derive2 { name="ssize"; version="1.68.0"; sha256="1q0wgqxja6fpnf1awwq25dh891mlsrszb2lizwzbkw8nfj4zx4v8"; depends=[gdata xtable]; }; + ssrch = derive2 { name="ssrch"; version="1.10.0"; sha256="0mvi90gs74fzyy08bssy6x3skcwwxyixn7fg31h4fd2iii1rsf9i"; depends=[DT shiny]; }; + ssviz = derive2 { name="ssviz"; version="1.28.0"; sha256="1jhzvz9scacwxh4dlqv4x852aym5b6yjk3nam6hphinzpsjvjhjd"; depends=[Biostrings ggplot2 RColorBrewer reshape Rsamtools]; }; + staRank = derive2 { name="staRank"; version="1.36.0"; sha256="017z547lmj0sid27wdkw999i9b1dha20ql8dhi47s0yrivx2qzc8"; depends=[cellHTS2]; }; + stageR = derive2 { name="stageR"; version="1.16.0"; sha256="0vpx0v04hgkhzi0bm7ipnb9xr37n5wvnnr45lljgni8pwabfkf6y"; depends=[SummarizedExperiment]; }; + statTarget = derive2 { name="statTarget"; version="1.24.0"; sha256="07bz7sna144x6fwp0m5cqjrr5h1gic841pkv24dgxxkzq0arzcwm"; depends=[impute pdist pls plyr randomForest ROC rrcov]; }; + stepNorm = derive2 { name="stepNorm"; version="1.66.0"; sha256="1v5a5zcczd65kzmpkjhr793z74f1758mbql0izwavc609ai5a241"; depends=[marray MASS]; }; + strandCheckR = derive2 { name="strandCheckR"; version="1.12.0"; sha256="1j7h8psn90zdz78j2115gwpdikkvpcfbv8izpwazawgl59byb4w8"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges magrittr reshape2 rmarkdown Rsamtools S4Vectors stringr TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + struct = derive2 { name="struct"; version="1.6.0"; sha256="1vnszdh24f8hh2kcpxr9whbpbws3qnm0zldjg5pdvkfvnsq6fa00"; depends=[knitr ontologyIndex rols S4Vectors SummarizedExperiment]; }; + structToolbox = derive2 { name="structToolbox"; version="1.6.0"; sha256="06b29kxi0gsai959vpqaknpccb20r7ij1dhj73nwcy9a0lc92n0z"; depends=[ggplot2 ggthemes gridExtra scales sp struct]; }; + subSeq = derive2 { name="subSeq"; version="1.24.0"; sha256="1yyj74cff2zjl7i5ms44805jb65f1xbd0f9yh084n4f3qn0vp7jh"; depends=[Biobase data_table digest dplyr ggplot2 magrittr qvalue tidyr]; }; + supersigs = derive2 { name="supersigs"; version="1.2.0"; sha256="0g622ci7761nk8baxi3w4m9qfalv2l97irkrpjsglmqf3rnc1h47"; depends=[assertthat Biostrings caret dplyr rlang rsample SummarizedExperiment tidyr]; }; + supraHex = derive2 { name="supraHex"; version="1.32.0"; sha256="00z4dir261xr5v2ajs8vifhyy35agcqjph9jlwg8q9f3s2n89c6x"; depends=[ape dplyr hexbin igraph magrittr MASS purrr readr stringr tibble tidyr]; }; + surfaltr = derive2 { name="surfaltr"; version="1.0.0"; sha256="072hm8mcv0cyjmpss8jq84g4igd8m0xvqjj4n8ys9i54f7ar66zh"; depends=[biomaRt Biostrings dplyr ggplot2 httr msa protr readr seqinr stringr testthat xml2]; }; + survcomp = derive2 { name="survcomp"; version="1.44.0"; sha256="0d2zc3si1cfmbknx61n229nd042kxgphf089zgbq46drav2rbqqb"; depends=[bootstrap ipred KernSmooth prodlim rmeta SuppDists survival survivalROC]; }; + survtype = derive2 { name="survtype"; version="1.10.0"; sha256="0m4y3sc4d74590m78sl61xzl2lg5ik2jxlasnkcg9gv4cqpi4nl5"; depends=[clustvarsel pheatmap SummarizedExperiment survival survminer]; }; + sva = derive2 { name="sva"; version="3.42.0"; sha256="0clzid9di2qfgc5bvnqx312k3inj1lc599ckqkllvr894wxb7mdj"; depends=[BiocParallel edgeR genefilter limma matrixStats mgcv]; }; + svaNUMT = derive2 { name="svaNUMT"; version="1.0.0"; sha256="1y090djhxmpb8rb74zy4sjbczh3cnfjx43g59f3as0n2h2knba0g"; depends=[assertthat BiocGenerics Biostrings dplyr GenomeInfoDb GenomicFeatures GenomicRanges rlang rtracklayer S4Vectors stringr StructuralVariantAnnotation VariantAnnotation]; }; + svaRetro = derive2 { name="svaRetro"; version="1.0.0"; sha256="0ah4qg0cy71sg0g7wh40lslj9xrbk53l1kc63mrg9ixwysiqrq8c"; depends=[assertthat BiocGenerics Biostrings dplyr GenomeInfoDb GenomicFeatures GenomicRanges rlang rtracklayer S4Vectors stringr StructuralVariantAnnotation VariantAnnotation]; }; + swfdr = derive2 { name="swfdr"; version="1.20.0"; sha256="1nhqvifn9ghfvxgcf0qzm5q3i1ar75ghly88sr6pwn8401rbbm6n"; depends=[]; }; + switchBox = derive2 { name="switchBox"; version="1.30.0"; sha256="09z9wi8yzjq49rjmn707a1kvf7c203lbxcnc7znwhy7lv51svj67"; depends=[gplots pROC]; }; + switchde = derive2 { name="switchde"; version="1.20.0"; sha256="1n815zwj5znddgc3pz87089q8bvb14n2g61zfang8d8pna4zbf7v"; depends=[dplyr ggplot2 SingleCellExperiment SummarizedExperiment]; }; + synapsis = derive2 { name="synapsis"; version="1.0.0"; sha256="1kqapzcd2zvmyaqshcrfxkkaf6k7kwaqnd6g4dhnjcf2wqnf6fs5"; depends=[EBImage]; }; + synergyfinder = derive2 { name="synergyfinder"; version="3.2.2"; sha256="0kpvp0lamchbgs4p34pbq14y3zrmgk0pgil0qhsrm3kv1pizk1w8"; depends=[dplyr drc furrr future ggforce ggplot2 ggrepel gstat kriging lattice magrittr metR mice nleqslv pbapply plotly purrr reshape2 sp SpatialExtremes stringr tidyr tidyverse vegan]; }; + synlet = derive2 { name="synlet"; version="1.24.0"; sha256="1xidxlkppap0x8h9iiyl78lcx50ckpg46n8pl49vz4435vd6grp2"; depends=[doBy dplyr ggplot2 magrittr RankProd RColorBrewer reshape2]; }; + systemPipeR = derive2 { name="systemPipeR"; version="2.0.0"; sha256="0kibr47z7ml13hpl955qcr4wp2z4nq7gjiinyk30wivrwrng5sg1"; depends=[BiocGenerics Biostrings crayon GenomicRanges ggplot2 htmlwidgets magrittr Rsamtools S4Vectors ShortRead stringr SummarizedExperiment yaml]; }; + systemPipeShiny = derive2 { name="systemPipeShiny"; version="1.4.0"; sha256="0h803ijajf32igfknkaivlzrc323apzligq1j8ghpf02q7f5q830"; depends=[assertthat bsplus crayon dplyr drawer DT ggplot2 glue htmltools magrittr openssl plotly R6 rlang RSQLite rstudioapi shiny shinyAce shinydashboard shinydashboardPlus shinyFiles shinyjqui shinyjs shinytoastr shinyWidgets spsComps spsUtil stringr styler tibble vroom yaml]; }; + systemPipeTools = derive2 { name="systemPipeTools"; version="1.2.0"; sha256="1n53nwb00zmrhb8h1fq4lqzdd87f74c4l1z24sid4xrjssylrnwr"; depends=[ape DESeq2 dplyr DT GGally ggplot2 ggrepel ggtree glmpca magrittr pheatmap plotly Rtsne SummarizedExperiment tibble]; }; + tLOH = derive2 { name="tLOH"; version="1.2.0"; sha256="0k3lqlivxbv4gaipiskhpl34rjrmrn1x4243awxnvbhhvaqq5r50"; depends=[data_table dplyr GenomicRanges ggplot2 MatrixGenerics purrr scales VariantAnnotation]; }; + tRNA = derive2 { name="tRNA"; version="1.12.0"; sha256="1sgmj7vcghssdxirxh1p059b8827gdckd9hplibs0a0chq21glcr"; depends=[BiocGenerics Biostrings GenomicRanges ggplot2 IRanges Modstrings S4Vectors scales stringr Structstrings XVector]; }; + tRNAdbImport = derive2 { name="tRNAdbImport"; version="1.12.0"; sha256="1xkbdyf5c7fk0hbp9jql33mh4dpffvyjm8binh2h9g109jbyshv7"; depends=[BiocGenerics Biostrings GenomicRanges httr IRanges Modstrings S4Vectors stringr Structstrings tRNA xml2]; }; + tRNAscanImport = derive2 { name="tRNAscanImport"; version="1.14.0"; sha256="1qfrbqpv0wk3hbvdwy3fvgns2sadrldij80h060miwbp6ilrf7ji"; depends=[BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Rsamtools rtracklayer S4Vectors stringr Structstrings tRNA XVector]; }; + tRanslatome = derive2 { name="tRanslatome"; version="1.32.0"; sha256="1ybq23hjad913dq291i2w198xkgflgzkhqh9r5azak3d6pbhnyzf"; depends=[anota Biobase DESeq2 edgeR GOSemSim gplots Heatplus limma org_Hs_eg_db plotrix RankProd sigPathway topGO]; }; + tanggle = derive2 { name="tanggle"; version="1.0.0"; sha256="0p1gqm28syrs0jd339iy48bcg3zsrzvcnydj3a36hvf2lihahiq1"; depends=[ape ggplot2 ggtree phangorn]; }; + target = derive2 { name="target"; version="1.8.0"; sha256="1qrrvssxv06i4cchlz8kc3xm7iyj4d8958161qda84ryh49zf6pz"; depends=[BiocGenerics GenomicRanges IRanges matrixStats shiny]; }; + tenXplore = derive2 { name="tenXplore"; version="1.16.0"; sha256="10wzragd76zvp2yjsxvsv08g1ss1dhfj38k8wcybjls4pssn5m7c"; depends=[AnnotationDbi matrixStats ontoProc org_Mm_eg_db restfulSE shiny SummarizedExperiment]; }; + ternarynet = derive2 { name="ternarynet"; version="1.38.0"; sha256="1zj5q5g2dhq4jfr3rgi448hlgvdnbb74caylq7n5k771xm10dmn9"; depends=[BiocParallel igraph]; }; + tidySingleCellExperiment = derive2 { name="tidySingleCellExperiment"; version="1.4.0"; sha256="06552iankswvvnwg8ba330iqg0xg8n55fxsgl2llw9xscn52lswb"; depends=[cli dplyr ellipsis fansi ggplot2 lifecycle magrittr pillar plotly purrr rlang S4Vectors SingleCellExperiment stringr SummarizedExperiment tibble tidyr tidyselect]; }; + tidySummarizedExperiment = derive2 { name="tidySummarizedExperiment"; version="1.4.1"; sha256="0q54bpb8xzw3ln4sxvpznkhx40lprcmnm62g0211xk8vmm6pxmf3"; depends=[cli dplyr ellipsis fansi ggplot2 lifecycle magrittr pillar plotly purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr tidyselect]; }; + tidybulk = derive2 { name="tidybulk"; version="1.6.1"; sha256="0fbipc79csw4g359imj4j674j49960kxgcf20ca6gki4996ng0l2"; depends=[dplyr GenomicRanges lifecycle magrittr preprocessCore purrr readr rlang scales stringi stringr SummarizedExperiment tibble tidyr tidyselect]; }; + tigre = derive2 { name="tigre"; version="1.48.0"; sha256="02d5khnl5klvg4r4h3nds4cs7713d4fp4lysxx34wfr62ps363az"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI gplots RSQLite]; }; + tilingArray = derive2 { name="tilingArray"; version="1.72.0"; sha256="0d7f1g162js5arq989qihs1nylf6q7fgbjy1gwy57ms8aswfna1r"; depends=[affy Biobase genefilter pixmap RColorBrewer strucchange vsn]; }; + timeOmics = derive2 { name="timeOmics"; version="1.6.0"; sha256="0z7p8bgcxz56wg7cya5zz9vq9ag3lj19jy4k7l8b8gh1j9cl7ph2"; depends=[dplyr ggplot2 ggrepel lmtest magrittr mixOmics plyr propr purrr stringr tibble tidyr]; }; + timecourse = derive2 { name="timecourse"; version="1.66.0"; sha256="0kk47zcgjxsgx9y456yx5afx2wpy8r5flw8bn96z7jfp8nn68nk8"; depends=[Biobase limma marray MASS]; }; + timescape = derive2 { name="timescape"; version="1.18.0"; sha256="0v3j0jybyin5i52mp2j3kvqiq3l57gjggq234g3ylywhskndrz9y"; depends=[dplyr gtools htmlwidgets jsonlite stringr]; }; + tkWidgets = derive2 { name="tkWidgets"; version="1.72.0"; sha256="1wlvrx998hqnfrkyvyrn775ni91pvc3adxp8hpv61qrh6aih9yvf"; depends=[DynDoc widgetTools]; }; + tofsims = derive2 { name="tofsims"; version="1.22.0"; sha256="0da4843wbcr821yp8z3z4vd81qpm2lblckgd01fm89lmwj393z65"; depends=[ALS alsace KernSmooth ProtGenerics Rcpp RcppArmadillo signal]; }; + tomoda = derive2 { name="tomoda"; version="1.4.0"; sha256="1fy2vzahz8m3syx4rimdnkhifnjbl504abq3h49vslng0pr7166d"; depends=[ggplot2 ggrepel RColorBrewer reshape2 Rtsne SummarizedExperiment umap]; }; + topGO = derive2 { name="topGO"; version="2.46.0"; sha256="01vykf8bzwm2k7cfj09r6il6qaycjy10wpaxbn13f21p66r5nlm2"; depends=[AnnotationDbi Biobase BiocGenerics DBI GO_db graph lattice matrixStats SparseM]; }; + topconfects = derive2 { name="topconfects"; version="1.10.0"; sha256="15l7fx8vajxw8sgprihy0k1gwkp63af9jav6w1hyjij23brlmd1a"; depends=[assertthat ggplot2]; }; + topdownr = derive2 { name="topdownr"; version="1.16.0"; sha256="1slnvqj0grdkif5mjyw2zg6fddnr45gz64b1ar2h6pb9blhsyi0m"; depends=[Biobase BiocGenerics Biostrings ggplot2 Matrix MSnbase mzR ProtGenerics S4Vectors]; }; + trackViewer = derive2 { name="trackViewer"; version="1.30.0"; sha256="0klfwndai55myrv7j6bp85bp9wg57z1rs2xxcrh5a11y1lx1x4ph"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph grImport Gviz htmlwidgets InteractionSet IRanges plotrix Rcpp Rgraphviz rhdf5 Rsamtools rtracklayer S4Vectors scales]; }; + tracktables = derive2 { name="tracktables"; version="1.28.0"; sha256="1ymz4gz73wbi3ansbf346fnp51nxq6v68ax0mp7y5vqf51jsvwwx"; depends=[GenomicRanges IRanges RColorBrewer Rsamtools stringr tractor_base XML XVector]; }; + tradeSeq = derive2 { name="tradeSeq"; version="1.8.0"; sha256="1s5anbb38gi5sfkxy19zpvkj8d0ij7m6cd0z4gmx4f5pf7pz0m3j"; depends=[Biobase BiocParallel edgeR ggplot2 igraph magrittr MASS Matrix matrixStats mgcv pbapply princurve RColorBrewer S4Vectors SingleCellExperiment slingshot SummarizedExperiment tibble TrajectoryUtils viridis]; }; + transcriptR = derive2 { name="transcriptR"; version="1.22.0"; sha256="1p5l2z3szx3qh02x7r81ajl7yc5wqsri6q6pzw83livmalcli5yy"; depends=[BiocGenerics caret chipseq e1071 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges pROC reshape2 Rsamtools rtracklayer S4Vectors]; }; + transcriptogramer = derive2 { name="transcriptogramer"; version="1.16.0"; sha256="15kb8b99bk1an4gkxc3fik0kqfvvp93rh2kb5vrw6zl5s1vqhpjk"; depends=[biomaRt data_table doSNOW foreach ggplot2 igraph limma progress RedeR snow tidyr topGO]; }; + transformGamPoi = derive2 { name="transformGamPoi"; version="1.0.0"; sha256="0fxf5iin0mqmwshm9vgcp2m7832jw11jlcis33saz1b40clajr22"; depends=[DelayedArray glmGamPoi HDF5Array Matrix MatrixGenerics SummarizedExperiment]; }; + transite = derive2 { name="transite"; version="1.12.0"; sha256="1w6nn720jrch4abm1z0hvpkniklq15n3ai6c0sxg11q6nkx4j028"; depends=[BiocGenerics Biostrings dplyr GenomicRanges ggplot2 ggseqlogo gridExtra Rcpp scales TFMPvalue]; }; + transomics2cytoscape = derive2 { name="transomics2cytoscape"; version="1.4.0"; sha256="1jbk224x4nzlzd19ydy8bly4fs6l7qx7rk07i4zd4l6h622nz78k"; depends=[dplyr KEGGREST RCy3]; }; + traseR = derive2 { name="traseR"; version="1.24.0"; sha256="0ch8hamhjjdcpi95gjqybzmk8vgx2j70gnlfiswvp8bjwf15hlfp"; depends=[BSgenome_Hsapiens_UCSC_hg19 GenomicRanges IRanges]; }; + traviz = derive2 { name="traviz"; version="1.0.0"; sha256="03w4jpx5vp4cf3g77cks6dp8dkl66bbjsixr4j25xc3xr26g6kw0"; depends=[Biobase ggplot2 mgcv princurve RColorBrewer rgl SingleCellExperiment slingshot SummarizedExperiment viridis]; }; + treeio = derive2 { name="treeio"; version="1.18.0"; sha256="03gz378qrp6b9fcriqanfnphibqv4bxhvz48rigzkidkzz71wfaj"; depends=[ape dplyr jsonlite magrittr rlang tibble tidytree]; }; + treekoR = derive2 { name="treekoR"; version="1.2.0"; sha256="1xrq8j7cr6s4a9171xqm1iw3a1dzdnmgyy68knilr42nxak064nn"; depends=[ape data_table diffcyt dplyr edgeR ggiraph ggplot2 ggtree hopach lme4 multcomp patchwork SingleCellExperiment tidyr]; }; + trena = derive2 { name="trena"; version="1.16.0"; sha256="1kz68z0dixiiryd62diddq352h8sx6r15flxm7h715abcniniyjn"; depends=[AnnotationDbi biomaRt Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 DBI GenomicRanges glmnet lassopv MotifDb org_Hs_eg_db randomForest RMySQL RPostgreSQL RSQLite SNPlocs_Hsapiens_dbSNP150_GRCh38 vbsr WGCNA xgboost]; }; + tricycle = derive2 { name="tricycle"; version="1.2.0"; sha256="1jcvbzpd5cfyyy6n6kvi0biyrv4m86z5fdmhjkg5wm4dm61r5n9q"; depends=[AnnotationDbi circular dplyr GenomicRanges ggplot2 IRanges RColorBrewer S4Vectors scater scattermore SingleCellExperiment SummarizedExperiment]; }; + trigger = derive2 { name="trigger"; version="1.40.0"; sha256="0irlxzy6vhp2q3lr9b4qnv7w43c3sdh7ali3rw1fgfpg29i4jc1f"; depends=[corpcor qtl qvalue sva]; }; + trio = derive2 { name="trio"; version="3.32.0"; sha256="16bnh1q53b2pkw4v7why5b1srl39zw6iza34yxynv34b8529sl46"; depends=[LogicReg siggenes survival]; }; + triplex = derive2 { name="triplex"; version="1.34.0"; sha256="0niyiafps242y9gnrc85ncb28c1q9ny1b20la53397h5w46sqq6i"; depends=[Biostrings GenomicRanges IRanges S4Vectors XVector]; }; + tripr = derive2 { name="tripr"; version="1.0.0"; sha256="0lcyjqn2my782hq8bmab08hpp0sgaz3c6wbcywn3pidcc0zqr56p"; depends=[config data_table dplyr DT golem gridExtra plot3D plotly plyr pryr RColorBrewer shiny shinyBS shinyFiles shinyjs stringdist stringr]; }; + tscR = derive2 { name="tscR"; version="1.6.0"; sha256="0mbyl00mylw0cvlbh93vxbc86y7fgn6n0zw7k0ix9cx7dx7kjwfm"; depends=[class cluster dplyr dtw GenomicRanges ggplot2 gridExtra IRanges kmlShape knitr latex2exp prettydoc RColorBrewer rmarkdown S4Vectors SummarizedExperiment]; }; + tspair = derive2 { name="tspair"; version="1.52.0"; sha256="0pm1rdiiza2737nar790zi2b37n25gpdxbg8ljg3a84mlji5jsws"; depends=[Biobase]; }; + ttgsea = derive2 { name="ttgsea"; version="1.2.0"; sha256="05r26pqd37acjwl1yj25i4whprlmd37sdah2xwin19nmjqx674dv"; depends=[data_table DiagrammeR keras purrr stopwords text2vec textstem tm tokenizers]; }; + tweeDEseq = derive2 { name="tweeDEseq"; version="1.40.0"; sha256="0xqd0i5d5q5fm58gxpxac24zpqpyj5dgab0kziwyn8pfyp1w5s4h"; depends=[cqn edgeR limma MASS]; }; + twilight = derive2 { name="twilight"; version="1.70.0"; sha256="1fy01p3fgajc2jhc286b51mcynj0lrzv3ln21kyj981qk2c390qq"; depends=[Biobase]; }; + twoddpcr = derive2 { name="twoddpcr"; version="1.18.0"; sha256="0b8r7dvqjlswkpfy141kibldj9aw3w8wxw0swmcgxkivml4gz1sw"; depends=[class ggplot2 hexbin RColorBrewer S4Vectors scales shiny]; }; + txcutr = derive2 { name="txcutr"; version="1.0.0"; sha256="0vzdbn75d9hvb4ni5ra7z4s52rbbl3sdi6kpidy421l3sb5clbsj"; depends=[AnnotationDbi BiocGenerics BiocParallel Biostrings GenomicFeatures GenomicRanges IRanges rtracklayer S4Vectors]; }; + tximeta = derive2 { name="tximeta"; version="1.12.0"; sha256="03fbz6pka7bcbhd0bblgckyxsqhzp4n8qp2dcpdb3sr01lyw4bc5"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings ensembldb GenomeInfoDb GenomicFeatures GenomicRanges IRanges jsonlite Matrix S4Vectors SummarizedExperiment tibble tximport]; }; + tximport = derive2 { name="tximport"; version="1.22.0"; sha256="0w6pr7s9j8l4fpn3przbfrsyxvzxc3ficgsychvhq3bami9np8g4"; depends=[]; }; + uSORT = derive2 { name="uSORT"; version="1.20.0"; sha256="0y6a6ksvbrxyqri0mc01nbls107sacs66zmbjs4qxq52rmy5xvcd"; depends=[Biobase BiocGenerics cluster fpc gplots igraph Matrix monocle plyr RANN RSpectra VGAM]; }; + uncoverappLib = derive2 { name="uncoverappLib"; version="1.4.0"; sha256="0nh5z1iirqdiv5q66k1r8byv9dasnzyinl0plan68gxvia770cnb"; depends=[BiocFileCache BSgenome_Hsapiens_UCSC_hg19 condformat DT EnsDb_Hsapiens_v75 EnsDb_Hsapiens_v86 GenomicRanges Gviz Homo_sapiens markdown openxlsx org_Hs_eg_db OrganismDbi processx rappdirs rlist Rsamtools shiny shinyBS shinycssloaders shinyjs shinyWidgets stringr TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + unifiedWMWqPCR = derive2 { name="unifiedWMWqPCR"; version="1.30.0"; sha256="0kw26bm2yyna38q5r4zb2alpa3j4gx7v970419mnjlif4g0hmggk"; depends=[BiocGenerics HTqPCR]; }; + universalmotif = derive2 { name="universalmotif"; version="1.12.1"; sha256="0d6zrwbc4i2npl29idm1icwa62wdx47z9s8yx7k662v3qagwpj16"; depends=[BiocGenerics Biostrings ggplot2 IRanges MASS Rcpp RcppThread rlang S4Vectors yaml]; }; + variancePartition = derive2 { name="variancePartition"; version="1.24.0"; sha256="0f5y61dpzwmr8v7npim18zvxa8n49rbzclb9j72haba0px6ibhvw"; depends=[Biobase BiocParallel doParallel foreach ggplot2 gplots iterators limma lme4 lmerTest MASS Matrix pbkrtest progress reshape2 rlang scales]; }; + vbmp = derive2 { name="vbmp"; version="1.62.0"; sha256="0yavhi3n9nlgq2s0xvglsnfi9yxdl0di8vs30h9p6a0hh3d1c8ql"; depends=[]; }; + velociraptor = derive2 { name="velociraptor"; version="1.4.0"; sha256="16v1qxl8z5pr3ygvby5n2klw0wm468fbsch1b9a67il8bjxslg0j"; depends=[basilisk BiocGenerics BiocParallel BiocSingular DelayedArray Matrix reticulate S4Vectors scuttle SingleCellExperiment SummarizedExperiment zellkonverter]; }; + veloviz = derive2 { name="veloviz"; version="1.0.0"; sha256="0d7cfvr7vapz76r6j51bz3hccfhgmn2m2bvnr132p0kx3y18skqx"; depends=[igraph Matrix mgcv Rcpp RSpectra]; }; + vidger = derive2 { name="vidger"; version="1.14.0"; sha256="1xcb1v0bvgvwk2vr7zhqa05fml5gfr4dbv5l92z53sqamrb1wdkf"; depends=[Biobase DESeq2 edgeR GGally ggplot2 ggrepel knitr RColorBrewer rmarkdown scales SummarizedExperiment tidyr]; }; + viper = derive2 { name="viper"; version="1.28.0"; sha256="03k2cib485rn9spz6qfbgfsmrmlrr0a19dg79hsjziplzsq3jqj7"; depends=[Biobase e1071 KernSmooth mixtools]; }; + vissE = derive2 { name="vissE"; version="1.2.2"; sha256="0dz7rgdr8lbg2nl66k14pfza8pwabzvsfnw3n7lb24z669mifvhd"; depends=[ggforce ggplot2 ggraph ggrepel ggwordcloud GSEABase igraph msigdb plyr RColorBrewer reshape2 scales scico textstem tidygraph tm]; }; + vsn = derive2 { name="vsn"; version="3.62.0"; sha256="03p2wdjbjnrn1ddyz0fbn04mdxpsmv83qhh3apj6azshl0bs1j2x"; depends=[affy Biobase ggplot2 lattice limma]; }; + vtpnet = derive2 { name="vtpnet"; version="0.34.0"; sha256="1id1cp0ybpz3vmcgfxi7ibz7smqdlmamggyi7awmw3nx4kck6nx3"; depends=[doParallel foreach GenomicRanges graph gwascat]; }; + vulcan = derive2 { name="vulcan"; version="1.16.0"; sha256="0dh3sr75xsax7610c6rgvsx23bnx79h5krx1ay62nnvpsakqjdr4"; depends=[Biobase caTools ChIPpeakAnno csaw DESeq2 DiffBind GenomicRanges gplots locfit S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene viper wordcloud zoo]; }; + waddR = derive2 { name="waddR"; version="1.8.0"; sha256="0inm2n14jwv9y34fs0lkv75ayl75i43s99d36jnkgnppfamkbc8b"; depends=[arm BiocFileCache BiocParallel eva Rcpp RcppArmadillo SingleCellExperiment]; }; + wateRmelon = derive2 { name="wateRmelon"; version="2.0.0"; sha256="1kzkg3cnm5pcs6blpw1qn7na6z3kar93v67680wsxa6qxxdiggk3"; depends=[Biobase IlluminaHumanMethylation450kanno_ilmn12_hg19 illuminaio limma lumi matrixStats methylumi ROC]; }; + wavClusteR = derive2 { name="wavClusteR"; version="2.28.0"; sha256="1a1zhckrgq5yl51acj5piyh2hq70q6hhpym4cawzdssxhcbq70bk"; depends=[BiocGenerics Biostrings foreach GenomicFeatures GenomicRanges ggplot2 Hmisc IRanges mclust Rsamtools rtracklayer S4Vectors seqinr stringr]; }; + weaver = derive2 { name="weaver"; version="1.60.0"; sha256="024yqr344zdahliwnv4xg6jq7hcvgvq7y6w2yl3d4iqhi4c84hg7"; depends=[codetools digest]; }; + webbioc = derive2 { name="webbioc"; version="1.66.0"; sha256="1r3rjvfhqbbzdhlslnc86kr2iip3xgvr81zpvcr8xv9mysgrln17"; depends=[affy annaffy Biobase BiocManager gcrma multtest qvalue vsn]; }; + weitrix = derive2 { name="weitrix"; version="1.6.0"; sha256="0aasilfzxg0npb1x2bwkjw6lhigypmqjjpw38qrp7pz1r0w5nmwa"; depends=[assertthat BiocGenerics BiocParallel Ckmeans_1d_dp DelayedArray DelayedMatrixStats dplyr ggplot2 glm2 limma purrr reshape2 RhpcBLASctl rlang S4Vectors scales SummarizedExperiment topconfects]; }; + widgetTools = derive2 { name="widgetTools"; version="1.72.0"; sha256="0jajfh78116wjfwbmzfvcbxswai4jj9ypzmfhs5j5iypaf8zff8j"; depends=[]; }; + wiggleplotr = derive2 { name="wiggleplotr"; version="1.18.0"; sha256="01y1rbmxjza7qx3q33k0r241if69hzkx9plgmj59wyji22lm7syi"; depends=[assertthat cowplot dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges purrr rtracklayer S4Vectors]; }; + wpm = derive2 { name="wpm"; version="1.4.0"; sha256="1jcidw17bhf42ivywkcqgsd0i93mq32gishnz7h9syvv25qcbrsy"; depends=[Biobase cli config dplyr DT ggplot2 golem logging RColorBrewer rlang shiny shinycustomloader shinydashboard shinyWidgets stringr SummarizedExperiment]; }; + wppi = derive2 { name="wppi"; version="1.2.0"; sha256="1spwa8p6w3pyw21dvd1lrhcz1sphdsmsd408jv55ss9nbgvgrp23"; depends=[dplyr igraph logger magrittr Matrix OmnipathR progress purrr RCurl rlang tibble tidyr]; }; + xcms = derive2 { name="xcms"; version="3.16.0"; sha256="0m6w68ndf2a4k148pbb0bbbgq57akzqgi9nf7k6ngkk22j3m7m95"; depends=[Biobase BiocGenerics BiocParallel IRanges lattice MassSpecWavelet MsCoreUtils MsFeatures MSnbase mzR plyr ProtGenerics RANN RColorBrewer robustbase S4Vectors SummarizedExperiment]; }; + xmapbridge = derive2 { name="xmapbridge"; version="1.52.0"; sha256="1zsqhisbq6f9qgw9f0a6ixxh635h3qm17117yfns5nnfw73ndlgi"; depends=[]; }; + yamss = derive2 { name="yamss"; version="1.20.0"; sha256="141hbryifm6na5shjyrbjwwksqnl75kqp1m2zl03l9sjqm0kapab"; depends=[BiocGenerics data_table EBImage IRanges limma Matrix mzR S4Vectors SummarizedExperiment]; }; + yarn = derive2 { name="yarn"; version="1.20.0"; sha256="0nk4qzrwjiv8q39lgil9x25bm3gpzrnhd37d7754kpxhs2fsmw9d"; depends=[Biobase biomaRt downloader edgeR gplots limma matrixStats preprocessCore quantro RColorBrewer readr]; }; + zFPKM = derive2 { name="zFPKM"; version="1.16.0"; sha256="0fk05vrmyyrhmkwi06lsi553mlpqj3fgwhk1kygz83iqv5z2vfw9"; depends=[checkmate dplyr ggplot2 SummarizedExperiment tidyr]; }; + zellkonverter = derive2 { name="zellkonverter"; version="1.4.0"; sha256="1ihp2f23lpdfgf3qliy22vrq8czm353hyhqf74r5r712190k6pgg"; depends=[basilisk cli DelayedArray Matrix reticulate S4Vectors SingleCellExperiment SummarizedExperiment]; }; + zinbwave = derive2 { name="zinbwave"; version="1.16.0"; sha256="05w95bnq63a339d8x4932k81ycqf825s3qwn98vr52v5g2hv46fq"; depends=[BiocParallel edgeR genefilter Matrix SingleCellExperiment softImpute SummarizedExperiment]; }; + zlibbioc = derive2 { name="zlibbioc"; version="1.40.0"; sha256="0a0dl7z58zxdj6938zbxixphgljj1giylk1nd05bb7qsccmp0xhj"; depends=[]; }; + ALPS = derive2 { name="ALPS"; version="1.5.0"; sha256="1aydvzc6x0871iasij68xqdlhjyg69qbqxm0qh1q52w8gj2nyq3p"; depends=[assertthat BiocParallel ChIPseeker corrplot data_table dplyr genefilter GenomicRanges GGally gghalves ggplot2 ggseqlogo Gviz magrittr org_Hs_eg_db plyr reshape2 rtracklayer stringr tibble tidyr TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; broken = true; }; + CompGO = derive2 { name="CompGO"; version="1.28.0"; sha256="16nlrk9wbxj51y8s7s58mdhpi70ghfacxi283406gwya3cm79f0n"; depends=[GenomicFeatures ggplot2 pathview pcaMethods reshape2 Rgraphviz rtracklayer TxDb_Mmusculus_UCSC_mm9_knownGene]; broken = true; }; EasyqpcR = derive2 { name="EasyqpcR"; version="1.31.0"; sha256="0lb2px789668fr1gxghycy7lbdkpwmippv6xmmwws6rbanvfd6v4"; depends=[matrixStats plotrix plyr]; broken = true; }; + FlowRepositoryR = derive2 { name="FlowRepositoryR"; version="1.23.0"; sha256="04lk2cahf6zqnhpzh0zwas4vmvaz4kcik9ri65bs9d9ximzjam91"; depends=[jsonlite RCurl XML]; broken = true; }; + MSEADbi = derive2 { name="MSEADbi"; version="1.2.0"; sha256="1g1kg3nh7iwg5nrpmig6srw6as4yfwmbqn965pffrk0zp19llsbf"; depends=[AnnotationDbi Biobase DBI RSQLite]; broken = true; }; + SwimR = derive2 { name="SwimR"; version="1.29.0"; sha256="0n58x3i4k3icvhg8z60zlhpszv8bb9pain07nl9rszyvmpi71vg2"; depends=[gplots R2HTML signal]; broken = true; }; + affyPara = derive2 { name="affyPara"; version="1.51.0"; sha256="01165f84snc3ksk0ghw631i2l5jklp4n826jwy5926wvxy3zlwz0"; depends=[affy affyio aplpack snow vsn]; broken = true; }; + methyAnalysis = derive2 { name="methyAnalysis"; version="1.34.0"; sha256="05k3n7iy5ijidbnblbqqas8dsj8drwzbhyrbs8wl1ypkg51havi0"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt genefilter GenomeInfoDb GenomicFeatures GenomicRanges Gviz IRanges lumi methylumi org_Hs_eg_db rtracklayer SummarizedExperiment VariantAnnotation]; broken = true; }; } diff --git a/pkgs/development/r-modules/cran-packages.nix b/pkgs/development/r-modules/cran-packages.nix index ea29a7df6707..b4476665d72e 100644 --- a/pkgs/development/r-modules/cran-packages.nix +++ b/pkgs/development/r-modules/cran-packages.nix @@ -4,7 +4,7 @@ # Rscript generate-r-packages.R cran >new && mv new cran-packages.nix { self, derive }: -let derive2 = derive { snapshot = "2021-10-21"; }; +let derive2 = derive { snapshot = "2021-11-01"; }; in with self; { A3 = derive2 { name="A3"; version="1.0.0"; sha256="017hq9pjsv1h9i7cqk5cfx27as54shlhdsdvr6jkhb8jfkpdb6cw"; depends=[pbapply xtable]; }; AATtools = derive2 { name="AATtools"; version="0.0.1"; sha256="08is383xhs2lc9wfffykcwqyl8mwcxfpk3lnvlpkp96hq9m9ikbf"; depends=[doParallel dplyr foreach magrittr]; }; @@ -78,7 +78,7 @@ in with self; { ANOVAreplication = derive2 { name="ANOVAreplication"; version="1.1.5"; sha256="1d2r2cwpn9rdfbmiccag487pvsq6adn7b321c5z8i7n671h2wi26"; depends=[quadprog shiny]; }; AOV1R = derive2 { name="AOV1R"; version="0.1.0"; sha256="0dv7k0mifybkarpwqyla5j6cvw9dcch09wvdq09ra9bsf4vyk652"; depends=[cellranger data_table lazyeval purrr]; }; APAtree = derive2 { name="APAtree"; version="1.0.1"; sha256="0vhvx2xp62avyq405jqn4i3z8awlifcs1lb527brxxhybrhnk4rv"; depends=[BH FD lwgeom raster Rcpp sf units]; }; - APCI = derive2 { name="APCI"; version="1.0.2"; sha256="1d6a9445sih206vhhijkfdhbwrw3ps4ny5y3b0zv6ami0mig0mgx"; depends=[data_table dplyr gee ggplot2 ggpubr magrittr stringr survey]; }; + APCI = derive2 { name="APCI"; version="1.0.3"; sha256="1fdv9zpc04i39zw8mg38mirh2nb8nkyf17s12fm83jp6x0jf7vbc"; depends=[data_table dplyr gee ggplot2 ggpubr magrittr stringr survey]; }; APCanalysis = derive2 { name="APCanalysis"; version="1.0"; sha256="11snn5i8zyjpzf58ica762fpp14v7x5h8a8iwx4s4v81pgvlx862"; depends=[]; }; APFr = derive2 { name="APFr"; version="1.0.2"; sha256="1vax7rfccds6qz3bi6n1h3nzl9jnxpwk331wmpsbqlk23md3m4g4"; depends=[]; }; APIS = derive2 { name="APIS"; version="1.0.1"; sha256="1af82mixamllly7v1jfvn1anpm1pafkv5mshwp6nmc27vaq201z5"; depends=[doParallel foreach ggplot2 gridExtra]; }; @@ -101,7 +101,7 @@ in with self; { ARPobservation = derive2 { name="ARPobservation"; version="1.2.1"; sha256="1gpq5wl3mwp4hi49h1g6nnizzpnfc19pv8chdyhv8y5sraq1k2ag"; depends=[]; }; ART = derive2 { name="ART"; version="1.0"; sha256="186w1ivj5v3h906crl953qxgai5wiznaih83dgvwgnmabs9p1wvk"; depends=[car]; }; ARTP2 = derive2 { name="ARTP2"; version="0.9.45"; sha256="12nqxry2jkl1n07rbms38mrnp39cn00d0h272d9f1z5x883flv62"; depends=[data_table Formula]; }; - ARTofR = derive2 { name="ARTofR"; version="0.2.3"; sha256="1ybmad3scdx8rmdzvzzglc1dkv36f12fbb6aaqd6c9xfzcra6ydj"; depends=[bannerCommenter clipr]; }; + ARTofR = derive2 { name="ARTofR"; version="0.3.3"; sha256="1ha76ilbbl8bfls8sbk98k6qysymy3jphmkn51j9sr60ghsdlxg4"; depends=[bannerCommenter clipr]; }; ARTool = derive2 { name="ARTool"; version="0.11.1"; sha256="16awxcncyhry0ygk8gdvlff787837rr8qsyg1pxd11w4v1llrqrf"; depends=[car dplyr emmeans lme4 magrittr plyr]; }; ARpLMEC = derive2 { name="ARpLMEC"; version="2.1"; sha256="0fj5mcaqpvgcwb6zp8yc5747clm6js99r3lqx5d3536w6k0f51r0"; depends=[gmm lmec MASS Matrix mnormt MomTrunc mvtnorm numDeriv sandwich tmvtnorm TTmoment]; }; ASGS_foyer = derive2 { name="ASGS.foyer"; version="0.3.1"; sha256="089c4vm629rni0dfgg3r2a9s9yisdx1qs2dwssg44qw1w4hf1f50"; depends=[sp]; }; @@ -112,7 +112,7 @@ in with self; { ASSISTant = derive2 { name="ASSISTant"; version="1.4.2"; sha256="1vh1glk83lg010v2fc289gr6xy0dzbrqcjfva2mmaymk6v78a1w5"; depends=[dplyr knitr magrittr mvtnorm R6]; }; ASSOCShiny = derive2 { name="ASSOCShiny"; version="0.1.0"; sha256="1g1ba9d5ywd3gbwjb36xnms8l15dg1vwc6r0nsb5adhpb602xsw1"; depends=[arules arulesViz dplyr plotly rmarkdown shiny shinyMatrix]; }; AST = derive2 { name="AST"; version="0.1.0"; sha256="0z5dw5qw0i61v4796ms7pp66f9y4ylxrcls31ixzcmkklh3rcnp3"; depends=[]; }; - ATAforecasting = derive2 { name="ATAforecasting"; version="0.0.54"; sha256="1rbsydrk7ccwj1p80sldwxzlvbki0n3znlchrh47l6w3pk5kvc72"; depends=[forecast Rcpp RcppArmadillo Rdpack seasonal stlplus stR timeSeries TSA tseries xts]; }; + ATAforecasting = derive2 { name="ATAforecasting"; version="0.0.55"; sha256="0p5n3hgx3iipssn7c81xn4zb4s1sz4mbr7bhslymblj9c8hy7vwm"; depends=[forecast Rcpp RcppArmadillo Rdpack seasonal stlplus stR timeSeries TSA tseries xts]; }; ATE = derive2 { name="ATE"; version="0.2.0"; sha256="1i46ivb7q61kq11z9v1rlnwad914nsdjcz9bagqx17vjk160mc0a"; depends=[]; }; ATR = derive2 { name="ATR"; version="0.1-1"; sha256="0via7zm3byzbdgrfw351fqvx0g5cj2z31bqfwh7kr99nqgjh0dyn"; depends=[partykit]; }; ATmet = derive2 { name="ATmet"; version="1.2.1"; sha256="17lzb4qnxgvlwy5zaz250mb0c4ayk509700k8mj8zf4dgv51kxa3"; depends=[DiceDesign lhs metRology msm sensitivity]; }; @@ -160,7 +160,7 @@ in with self; { AllPossibleSpellings = derive2 { name="AllPossibleSpellings"; version="1.1"; sha256="0ksfm2pfjka3yjgcd257v7sns1niaylsfxvhhh2jwdi016cpdw10"; depends=[]; }; AlleleRetain = derive2 { name="AlleleRetain"; version="2.0.2"; sha256="0b6h5giskqbjbrk8nf29i75wrhxsjw1c87laiqzrpbp9n717bl20"; depends=[]; }; AlleleShift = derive2 { name="AlleleShift"; version="1.0-2"; sha256="0pmjh5nq67fxnwlszp5rlmnmzg4gdjkr9dzaz6b0p7vh2cfy9m45"; depends=[adegenet BiodiversityR vegan]; }; - AlphaPart = derive2 { name="AlphaPart"; version="0.8.3"; sha256="024h9vywmqga9kgd8h64c706g4j3f6i6vm3zl7q23m9i5a4wisz8"; depends=[directlabels gdata ggplot2 pedigree Rcpp reshape]; }; + AlphaPart = derive2 { name="AlphaPart"; version="0.8.4"; sha256="177208h034xzjkn965si83v92qaniayhdl1bpvrvmp6q8anmywp4"; depends=[directlabels gdata ggplot2 pedigree Rcpp reshape]; }; AlphaSimR = derive2 { name="AlphaSimR"; version="1.0.4"; sha256="115rn03dgpgcb5h9f2f5rz7kmlrfqdr0xdw7l9f4v7wkbdmr9h0l"; depends=[BH R6 Rcpp RcppArmadillo]; }; Amelia = derive2 { name="Amelia"; version="1.8.0"; sha256="0plrnmlwn91bmrx8ip83nqb15ykjxjl6m49788sinq5cinkdbh9y"; depends=[foreign Rcpp RcppArmadillo]; }; AmericanCallOpt = derive2 { name="AmericanCallOpt"; version="0.95"; sha256="1nhy44j5bmmjsp6g79nrn741rzzxikhdnxk4wwbdj9igcc1bs573"; depends=[]; }; @@ -187,7 +187,7 @@ in with self; { AntWeb = derive2 { name="AntWeb"; version="0.7"; sha256="1ykfg3zzjdvjppr2l4f26lx00cn5vaqhhz1j1b5yh113ggyl40qw"; depends=[assertthat httr leafletR plyr rjson]; }; AnthropMMD = derive2 { name="AnthropMMD"; version="3.1.0"; sha256="10ms5akc2r9dmcm8dd8bn7qn0bq71c270yhs61981n4mxsvgjmnr"; depends=[plotrix scatterplot3d shiny smacof]; }; Anthropometry = derive2 { name="Anthropometry"; version="1.16"; sha256="0iqlmp9vig4qdavs37kislqxwhk0c0pgsn1kwz3mm75nylxmpbp0"; depends=[archetypes biclust cluster depth FNN ICGE nnls rgl shapes]; }; - AntibodyTiters = derive2 { name="AntibodyTiters"; version="0.1.4"; sha256="0xa1ypjffslxhclnxnkl5k3a1nqrcqq8wdgcb5j7kvg0a7jw0blj"; depends=[openxlsx]; }; + AntibodyTiters = derive2 { name="AntibodyTiters"; version="0.1.18"; sha256="000pxpkxwfaynmlr8xpbnkck2q61ym281ykxq88mrscqgyimp40k"; depends=[DescTools openxlsx]; }; Aoptbdtvc = derive2 { name="Aoptbdtvc"; version="0.0.2"; sha256="1bygvf8vgzz3wa4485x2xxpk784zmw1nwsjjjysm12brrldh8zzh"; depends=[lpSolve MASS]; }; AovBay = derive2 { name="AovBay"; version="0.1.0"; sha256="110y9wbqr0m9b6wr1c5mncrdjpg247308989bswkqnim2msvnzcf"; depends=[BayesFactor BH broom car dplyr DT highcharter htmltools moments nortest purrr Rcpp RcppEigen RcppParallel reshape rstan rstantools shiny shinycssloaders shinydashboard shinydashboardPlus StanHeaders stringr tibble waiter]; }; ApacheLogProcessor = derive2 { name="ApacheLogProcessor"; version="0.2.3"; sha256="0h4snigh1yhp34vw52h4b6qbh9c4cvwz2cx8fwvbnw6lslmg5cgv"; depends=[doParallel foreach stringr]; }; @@ -231,8 +231,8 @@ in with self; { AzureKeyVault = derive2 { name="AzureKeyVault"; version="1.0.5"; sha256="15x0mkgn7pq2yk05l5vwvd744gxkz28nb5azc1yz502ayr1s6hnm"; depends=[AzureAuth AzureGraph AzureRMR httr jose jsonlite openssl R6]; }; AzureKusto = derive2 { name="AzureKusto"; version="1.0.6"; sha256="02wj1nzbs9l6aapk94p89gahbffmk3gy80l57bd1l0afpw0y3jr8"; depends=[AzureAuth AzureRMR DBI dplyr httr jsonlite openssl R6 rlang tibble tidyselect]; }; AzureQstor = derive2 { name="AzureQstor"; version="1.0.1"; sha256="1z7j8kakiarpw3q2rii7gl9zc2nsb49nzs1nxg1hgfyvcdhw2fcg"; depends=[AzureRMR AzureStor httr openssl]; }; - AzureRMR = derive2 { name="AzureRMR"; version="2.4.2"; sha256="0vjsbr56vl6j5mm6sbf127k06cmb9adbzapp5njl63181c11nx6g"; depends=[AzureAuth AzureGraph httr jsonlite R6 uuid]; }; - AzureStor = derive2 { name="AzureStor"; version="3.5.1"; sha256="13xygdfmvr41ckrlw278nayn7lkx2w9f398qzj342rffnqlqz1i0"; depends=[AzureRMR httr mime openssl R6 xml2]; }; + AzureRMR = derive2 { name="AzureRMR"; version="2.4.3"; sha256="076hgxx2d6jf24fhysxk3mnp22ns8i6cqp3mzd64rafl1clqy3l1"; depends=[AzureAuth AzureGraph httr jsonlite R6 uuid]; }; + AzureStor = derive2 { name="AzureStor"; version="3.5.2"; sha256="0c1pkzq62nk2nybhp60nvy6vjwgzcxyraw6fcldwqylqg1y4104h"; depends=[AzureRMR httr mime openssl R6 vctrs xml2]; }; AzureTableStor = derive2 { name="AzureTableStor"; version="1.0.0"; sha256="0xrfpi9psn1h21g4mvcbqsjav56s8cha381vsjkp1swilrxhmk5l"; depends=[AzureRMR AzureStor httr jsonlite openssl uuid vctrs]; }; AzureVM = derive2 { name="AzureVM"; version="2.2.2"; sha256="0766a4y17qgq3vgb398n6zn8sdjrv65gpvrnr9b9g89zdsdy9fc4"; depends=[AzureRMR jsonlite R6]; }; AzureVMmetadata = derive2 { name="AzureVMmetadata"; version="1.0.1"; sha256="15ghijzva6qzq2riq8ci4bh6ssknnp15yyy1fql0k4878wkf7vs0"; depends=[httr openssl]; }; @@ -272,7 +272,7 @@ in with self; { BCC1997 = derive2 { name="BCC1997"; version="0.1.1"; sha256="1lqbivjkc7858jn54av1v9bzp0as43klgndbzkr59dc3l128xp12"; depends=[]; }; BCDating = derive2 { name="BCDating"; version="0.9.8"; sha256="1px9fimg3fqx8bfkzq6rl34xclc9gcjxqjvj5islpdy4f1ifwph3"; depends=[]; }; BCE = derive2 { name="BCE"; version="2.1"; sha256="0dqp08pbq7r88yhvlwgzzk9dcdln7awlliy5mfq18j5jhiy7axiz"; depends=[FME limSolve Matrix]; }; - BCEA = derive2 { name="BCEA"; version="2.3-1.1"; sha256="0ppjcbcapmg6j5gdalw1j86w50xwaanvhld9zpzp5fvj8b7f016b"; depends=[dplyr MASS rlang]; }; + BCEA = derive2 { name="BCEA"; version="2.4.1"; sha256="1x5hyl09ky7jgqvqfnf8sx6s8ncglbhk2bwj8mvhl02kgx4n42k6"; depends=[dplyr ggplot2 GrassmannOptim gridExtra MASS purrr reshape2 rlang]; }; BCEE = derive2 { name="BCEE"; version="1.3.0"; sha256="19sg84qw44pa7dmr2l656zv988cj6ap6069l53vza5ynqswckbw2"; depends=[BMA boot leaps Rcpp RcppArmadillo]; }; BCHM = derive2 { name="BCHM"; version="1.00"; sha256="1nyf65grcyf74sixixzl12gylk2rzh7n5id4mbhim4lzdm4j272i"; depends=[cluster coda crayon knitr plyr rjags]; }; BCRA = derive2 { name="BCRA"; version="2.1.2"; sha256="17h0ara1y3fh2xyhjarbw3b549v6kq108bg946ndh7kjykara9dd"; depends=[]; }; @@ -293,7 +293,7 @@ in with self; { BENMMI = derive2 { name="BENMMI"; version="4.3-7"; sha256="1v96g4l1zkpvvx8jdifnafyaz4ml8v1bxbl97r1n5n6mgw88gk77"; depends=[benthos dplyr ggplot2 jsonlite knitr markdown purrr readr tidyr xtable]; }; BEST = derive2 { name="BEST"; version="0.5.4"; sha256="109zl99bz1bndan1pm3hm0f1da86a18lcyzl0741z14l0m0d91a9"; depends=[coda HDInterval rjags]; }; BESTree = derive2 { name="BESTree"; version="0.5.2"; sha256="0yij6xdlvhbqifckaylgbhszwwp38d9x6vbpr1nl40mwwnv4bswz"; depends=[plyr]; }; - BET = derive2 { name="BET"; version="0.4.0"; sha256="1yr45v4s1h61pgghfxfhi3gi5fw67fv6jxs9k70nvhifbvqn7143"; depends=[Rcpp]; }; + BET = derive2 { name="BET"; version="0.4.1"; sha256="1jaqsj3gyl1jdpl9m2jm10s9zpwr25s70nxn4yg14aik5grccd6r"; depends=[Rcpp]; }; BETS = derive2 { name="BETS"; version="0.4.9"; sha256="0daixk7mqmk2jq35i7mjaslz11gxbnnjgwxfvj8x1s88vz9l74sm"; depends=[DBI digest dplyr DT dygraphs forecast foreign ggplot2 grnn htmltools httr lubridate miniUI plotly rjson rmarkdown RMySQL rstudioapi rvest seasonal shiny sqldf stringr urca webshot xml2 zoo]; }; BFS = derive2 { name="BFS"; version="0.4.1"; sha256="1crlx3v6bsd5gi0f1hhlcykydbpqn9fryfw5k0ynlcivgif0ll9z"; depends=[janitor jsonlite lifecycle magrittr pxweb rvest tibble tidyRSS xml2]; }; BFpack = derive2 { name="BFpack"; version="0.3.2"; sha256="04rb48wdab23i20lv7s2a2dafxxyvvl9zxpl17var038v6rd02vs"; depends=[bain extraDistr lme4 MASS Matrix mvtnorm pracma]; }; @@ -315,7 +315,7 @@ in with self; { BIEN = derive2 { name="BIEN"; version="1.2.4"; sha256="1dagrs54ciagm2mgqrvxl6k2akahr0qk63ifxqnks7iljm0x1gw6"; depends=[ape DBI doParallel fasterize foreach raster rgdal rgeos RPostgreSQL sf sp]; }; BIFIEsurvey = derive2 { name="BIFIEsurvey"; version="3.3-12"; sha256="1kphczvj3rxyjvi93cx2j714scvmmpqv5wrg5pdyy8l891jxsr89"; depends=[miceadds Rcpp RcppArmadillo]; }; BIGDAWG = derive2 { name="BIGDAWG"; version="2.3.6"; sha256="1mlk2b293lr2vj0ydh96p9ynbvv67jnkqm9qxz9kcxq65b2i5cv3"; depends=[haplo_stats httr XML]; }; - BIGL = derive2 { name="BIGL"; version="1.6.4"; sha256="1nlmzvygf5bakimjcqcvv6av4kj620nls3994j9zi4xxxs5i5j54"; depends=[ggplot2 MASS minpack_lm nleqslv numDeriv progress rgl robustbase scales]; }; + BIGL = derive2 { name="BIGL"; version="1.6.5"; sha256="1ksp88nspjd2si0kicv3j6fvb8i46phgpf6mw8ihfxkn9mrjbs2v"; depends=[ggplot2 MASS minpack_lm nleqslv numDeriv progress rgl robustbase scales]; }; BINCOR = derive2 { name="BINCOR"; version="0.2.0"; sha256="0x2s82jql429shk70bhjdy9kamz8dz5ymsxj6kp8ga1711bpwyq6"; depends=[pracma]; }; BINtools = derive2 { name="BINtools"; version="0.1.0"; sha256="061g1790m3gi88kj1avgxdnpdvj6n2mg5dh17c7vx4gx5g5x2q2d"; depends=[BH combinat dplyr mvtnorm Rcpp RcppEigen RcppParallel rstan StanHeaders stringi tibble]; }; BIOM_utils = derive2 { name="BIOM.utils"; version="0.9"; sha256="0xckhdvf15a62awfk9rjyqbi6rm7p4awxz7vg2m7bqiqzdll80p7"; depends=[]; }; @@ -368,6 +368,7 @@ in with self; { BSDA = derive2 { name="BSDA"; version="1.2.1"; sha256="0vcf3h1rkgs0mr6rri2zjkb3c62dmndm281zh4ddz2vyw27wpwg2"; depends=[e1071 lattice]; }; BSGS = derive2 { name="BSGS"; version="2.0"; sha256="08m8g4zbsp55msqbic4f17lcry07mdn0f5a61zdcy2msn2ihzzf9"; depends=[batchmeans MASS plyr pscl]; }; BSGW = derive2 { name="BSGW"; version="0.9.2"; sha256="1q6qvm9yxh35wywrzs3kr31jsa0bmbwrqh0r3qjc0dzi6q8n6pjy"; depends=[doParallel foreach MfUSampler survival]; }; + BSL = derive2 { name="BSL"; version="3.2.2"; sha256="0yn0ay7f9214d8f5ghrpn4bzwfxv5gk13ip10f1mpkhqv0cjbham"; depends=[coda copula DBI doRNG foreach ggplot2 glasso gridExtra MASS mvtnorm Rcpp RcppArmadillo Rdpack stringr whitening]; }; BSPADATA = derive2 { name="BSPADATA"; version="1.0"; sha256="1g709i0icxlxq2ljb2sm5iyc8ljqxadi62xc4mg702fsgl0x5ny9"; depends=[mvtnorm pscl spdep]; }; BSS = derive2 { name="BSS"; version="0.1.0"; sha256="1lxmrdmr6c0niqz61kc9ybzszprn66jyinfy4dr9r6i161gvs4qg"; depends=[hypergeo MASS phangorn]; }; BSSasymp = derive2 { name="BSSasymp"; version="1.2-1"; sha256="0w141yxqpck59n85rjc6d3qy6bwhk1z80zsm21hda0bgfwy9v6wy"; depends=[fICA JADE]; }; @@ -376,7 +377,7 @@ in with self; { BSagri = derive2 { name="BSagri"; version="0.1-10"; sha256="096l2ilr4x2fbjxchkksxkbiyaf7wwdmzn4xyjx001w873x9dgf6"; depends=[boot gamlss MCPAN mratios multcomp mvtnorm]; }; BTLLasso = derive2 { name="BTLLasso"; version="0.1-11"; sha256="1nz90jg74xzcwjxi9ppp7a78bg4976h2cmvlz140ss5403pnfbsk"; depends=[Matrix psychotools Rcpp RcppArmadillo stringr TeachingDemos]; }; BTM = derive2 { name="BTM"; version="0.3.6"; sha256="0ab0wr8nbwn1w1j9hpwfz52lm1sw0qk93713y9k0hpm3pw9dq4jr"; depends=[Rcpp]; }; - BTSPAS = derive2 { name="BTSPAS"; version="2021.11.1"; sha256="0xr29fxgnp3kz73f0lx0985rblg53qzxcsnms9ng5idfiqkb3bdx"; depends=[actuar coda data_table ggforce ggplot2 gridExtra plyr R2jags reshape2 scales]; }; + BTSPAS = derive2 { name="BTSPAS"; version="2021.11.2"; sha256="1as1r050qabbm9k19lbcdkyjsblc7f6hd3x7dy38rc6rxzp2iilj"; depends=[actuar coda data_table ggforce ggplot2 gridExtra plyr R2jags reshape2 scales]; }; BTYD = derive2 { name="BTYD"; version="2.4.2"; sha256="0yccq603vxjzhssb59icmps4iz0sn52wirwajx7995rz0zkfgfvh"; depends=[dplyr hypergeo Matrix optimx]; }; BTYDplus = derive2 { name="BTYDplus"; version="1.2.0"; sha256="1shai7kij20g3isd6l29i696pkzymr0qq2i9gzfsxmvdb4g4pcm2"; depends=[bayesm BTYD coda data_table mvtnorm Rcpp]; }; BTdecayLasso = derive2 { name="BTdecayLasso"; version="0.1.0"; sha256="0x1s2zvv3vnapk5wp8582zwflsqvgc8khkvl5ch9i70v739jxp15"; depends=[ggplot2 optimr]; }; @@ -452,7 +453,7 @@ in with self; { BayesSpec = derive2 { name="BayesSpec"; version="0.5.3"; sha256="17gchdijcjhbr2y4glbq9szjh4qmgivzh6p4fllh589da18nzjcr"; depends=[mvtnorm pscl trust]; }; BayesSummaryStatLM = derive2 { name="BayesSummaryStatLM"; version="2.0"; sha256="1b4h6s3cb8904slyy2pq3dzy3941p87s32zacmpwrnp7yvwxzl3d"; depends=[bit ff mvnfast]; }; BayesSurvival = derive2 { name="BayesSurvival"; version="0.2.0"; sha256="1kpp0dfcmk86grg13b817py49v071q6p0dh8z22g6x2i8zl1vdfi"; depends=[ggplot2 survival]; }; - BayesTools = derive2 { name="BayesTools"; version="0.1.2"; sha256="0bly7xx9i11m6qp1i6a934dflrcn4lnqzacfpzwibwvl7ipnxci6"; depends=[bridgesampling coda extraDistr ggplot2 runjags]; }; + BayesTools = derive2 { name="BayesTools"; version="0.1.3"; sha256="0rbj503kxv0bgb2g05lwbl87xd8a2d6hh2z3pmv8ssd1wlh4s895"; depends=[bridgesampling coda extraDistr ggplot2 Rdpack runjags]; }; BayesTree = derive2 { name="BayesTree"; version="0.3-1.4"; sha256="0saca1ln582szqzc2c78z24b1lszzhc9hvsin73kb7r2dlg5ciii"; depends=[nnet]; }; BayesTreePrior = derive2 { name="BayesTreePrior"; version="1.0.1"; sha256="13igmvw1wj8kzfijzsrhdqr52kv4vqrm91i71ay6f7jnkry3spaw"; depends=[]; }; BayesTwin = derive2 { name="BayesTwin"; version="1.0"; sha256="026blnhihbx9bpd63mxhbp0kpvj0lwbj7mg72alyfr2jnrh1n3lp"; depends=[coda foreign matrixStats rjags]; }; @@ -461,7 +462,7 @@ in with self; { BayesX = derive2 { name="BayesX"; version="0.3-1"; sha256="0g4cdkvicqzg75qgr62j89dc9mni38ai7705j6jbfx59vn6dbrr5"; depends=[coda colorspace maptools shapefiles sp]; }; BayesXsrc = derive2 { name="BayesXsrc"; version="3.0-1.1"; sha256="00q7hwan8db1a3wxczksl52bghyhfql3wj7sjvq50zsp0pjr6vng"; depends=[]; }; BayesianAnimalTracker = derive2 { name="BayesianAnimalTracker"; version="1.2"; sha256="1pgjijqznfdpvw296h5vksnxgspxs7qhy6s84ww7abnlhg59bz5s"; depends=[TrackReconstruction]; }; - BayesianFROC = derive2 { name="BayesianFROC"; version="0.4.0"; sha256="1rq75kz2s4gphmiqr9jwv2jdjkia64bxa95sglb0h55wlsrww1fh"; depends=[bridgesampling car crayon ggplot2 knitr pracma Rcpp readxl rhandsontable rstan shiny shinydashboard shinythemes xlsx]; }; + BayesianFROC = derive2 { name="BayesianFROC"; version="0.5.0"; sha256="0v19rpk8i0jrb3za6lsdwb97f2qkn3ja8sym8q43nqg5sfwsp5fw"; depends=[bridgesampling car crayon fastDummies ggplot2 knitr pracma Rcpp rhandsontable rstan shiny shinydashboard shinyjs shinythemes]; }; BayesianGLasso = derive2 { name="BayesianGLasso"; version="0.2.0"; sha256="09yb1qqx6qlsspk3ndrcqxy0956iqznw0rmyvqxgxxp3zd3y21xp"; depends=[MASS statmod]; }; BayesianLaterality = derive2 { name="BayesianLaterality"; version="0.1.1"; sha256="1b8ndwnwsj2wzbjp3rivdsx5nsfg2rgv6mnlyp7jxaksxvf4ray7"; depends=[dplyr purrr Rdpack rlang tidyr tmvtnorm]; }; BayesianNetwork = derive2 { name="BayesianNetwork"; version="0.1.5"; sha256="0vnnxzxz68dkfwr9wif8lam3a4khgbslbf49xkygqm8n1swysx2x"; depends=[bnlearn heatmaply lattice networkD3 plotly rintrojs shiny shinyAce shinydashboard shinytest shinyWidgets testthat]; }; @@ -569,6 +570,7 @@ in with self; { BosonSampling = derive2 { name="BosonSampling"; version="0.1.3"; sha256="0dxvjdvzv2b3763x4wrkw02q57l42286w9bg2xhcngmcpdhnkg51"; depends=[Rcpp RcppArmadillo]; }; BoutrosLab_plotting_general = derive2 { name="BoutrosLab.plotting.general"; version="6.0.3"; sha256="0sirpdp7k28wwn5k5wyc0ib6abb5b1qpjrrk3m168x5yg1s2hqkf"; depends=[cluster e1071 gridExtra gtable hexbin lattice latticeExtra MASS]; }; BradleyTerry2 = derive2 { name="BradleyTerry2"; version="1.1-2"; sha256="0vss3ib74cz2zn1afmrvllawghj9z2ay4x1ysvk4rqvjmiia4a2i"; depends=[brglm gtools lme4 qvcalc]; }; + BrailleR = derive2 { name="BrailleR"; version="0.32.1"; sha256="0hnwfn3z9d22jp9xqgz7sz3yqlay863ys9czvd07xyscqpzq973k"; depends=[devtools dplyr extrafont ggplot2 gridGraphics gridSVG hunspell knitr magrittr mathjaxr moments nortest reticulate rlang rmarkdown roloc rolocISCCNBS whisker XML xtable]; }; BrainCon = derive2 { name="BrainCon"; version="0.1.0"; sha256="10c76l14kdvcyfhph5zsrn4ayh0x454cxbn1v85jamcalp610n69"; depends=[glmnet MASS]; }; Branching = derive2 { name="Branching"; version="0.9.4"; sha256="1c209gdasm7qipv2gg4d1hr0jmhnzz5rddgjxb7xacazc0c2mhff"; depends=[]; }; BrazilMet = derive2 { name="BrazilMet"; version="0.1.0"; sha256="0yrc0ha7ysmad7l0kwylgmmd0b5zy86dsba4lrj8qa294lgxl5fa"; depends=[dplyr readxl stringr tidyr]; }; @@ -584,9 +586,9 @@ in with self; { BurStFin = derive2 { name="BurStFin"; version="1.02"; sha256="16w2s0bg73swdps9r0i8lwvf1najiqyx7w7f91xrsfhmnqkkjzka"; depends=[]; }; BurStMisc = derive2 { name="BurStMisc"; version="1.1"; sha256="0cyi42zkn2dby162x9f95b3hpqxbzx25s7nahb4p86r60xj3a5c0"; depends=[]; }; BusinessDuration = derive2 { name="BusinessDuration"; version="0.2.0"; sha256="17923n1r3n8kp7qqzr2dv8ffax355yyc3b9f6mv2hxy6k31hrrb8"; depends=[chron]; }; - BuyseTest = derive2 { name="BuyseTest"; version="2.3.0"; sha256="1vawklcxjp7apcq3k29skj2lqx8dwpl46a3rzglxpjm2scx3wy7c"; depends=[data_table doParallel foreach ggplot2 lava prodlim Rcpp RcppArmadillo]; }; + BuyseTest = derive2 { name="BuyseTest"; version="2.3.5"; sha256="1zsjfry283ldzvjx5bdn728nb8fisijkgvam0zwxxp3awh3dr43r"; depends=[data_table doParallel foreach ggplot2 lava prodlim Rcpp RcppArmadillo]; }; Bvalue = derive2 { name="Bvalue"; version="1.0"; sha256="17zlllzjrcq4grggal3hlg384990n62wnflr2g21fa6hcnglwy7d"; depends=[]; }; - C443 = derive2 { name="C443"; version="3.2.1"; sha256="19jnn0lghv1a3n6q57almmsqbqzpvab029h4lyy3xpydc8ij8j7b"; depends=[cluster ggplot2 gridExtra igraph MASS partykit plyr qgraph RColorBrewer reshape2 rpart]; }; + C443 = derive2 { name="C443"; version="3.2.2"; sha256="0fs8pcqwhb9wqwharghr05v6jvgsqln3mya2v0zzcmir6qql33v2"; depends=[cluster ggplot2 gridExtra igraph MASS partykit plyr qgraph RColorBrewer reshape2 rpart]; }; C50 = derive2 { name="C50"; version="0.1.5"; sha256="1mqn7xzl9sbx61jhhkiq1gllwf8s6l1cgz7mck53461p6147phgh"; depends=[Cubist partykit]; }; CA3variants = derive2 { name="CA3variants"; version="3.0"; sha256="0n0a4rxaskz94kibcycrsg46w8r515r4pzadvlv6b43qpgwrqh92"; depends=[checkmate ggforce ggplot2 ggrepel gridExtra multichull plotly]; }; CADFtest = derive2 { name="CADFtest"; version="0.3-3"; sha256="06bwv728ckalzibxginzfica24w18m4g87i0i064m3q89ghmnlqm"; depends=[dynlm sandwich tseries urca]; }; @@ -938,6 +940,7 @@ in with self; { ConvergenceConcepts = derive2 { name="ConvergenceConcepts"; version="1.2.2"; sha256="1pvcl0bgd4anrbn6wqxsd1s23ycsc7jhrk94yzwx67xx0qs9mmrw"; depends=[lattice tkrplot]; }; Convolutioner = derive2 { name="Convolutioner"; version="0.1.0"; sha256="1ria4ii7zdqgrzgdx4c82dj4lg791iwy2y66fv1qyibws0ag3bhq"; depends=[]; }; CoopGame = derive2 { name="CoopGame"; version="0.2.2"; sha256="0i4yw2nznmcps9s9f592nbs8dvncb0w2bynvsfkp21lzd4pfsp4n"; depends=[geometry gtools rcdd]; }; + CoordinateCleaner = derive2 { name="CoordinateCleaner"; version="2.0-20"; sha256="1n1k97imcg3n8nvl9759nqbzirxs011micx4qj2sf1d0bvnlrzs1"; depends=[dplyr geosphere ggplot2 raster rgbif rgdal rgeos rnaturalearth sp tidyselect]; }; CopCTS = derive2 { name="CopCTS"; version="1.0.0"; sha256="1j0bhkjk181y9k69442diswgwax5whmh5vfqydhf3b1r5ll1wkm3"; depends=[copBasic copula msm]; }; CopernicusDEM = derive2 { name="CopernicusDEM"; version="1.0.1"; sha256="0pf3y335agfkdnxjyfcfkbrk2999p5h0by959ahc1wxyrxdghxsl"; depends=[doParallel foreach gdalUtils glue sf]; }; Copula_Markov = derive2 { name="Copula.Markov"; version="2.8"; sha256="0wyb80jj9zgh7kn0nah7dljps72083c92hpds94dw4ccmw6cfwf6"; depends=[]; }; @@ -1006,7 +1009,7 @@ in with self; { DAMOCLES = derive2 { name="DAMOCLES"; version="2.3"; sha256="0pk9gq82qa18fl7zp74d47bgy8lhj9rkvfq23w8844nz9kn58s1f"; depends=[ape caper DDD deSolve expm Hmisc Matrix matrixStats picante]; }; DAMisc = derive2 { name="DAMisc"; version="1.6.2"; sha256="0arazw6pjgd9xgsdnyz8ccwyrpakyqzraw6j08zlrnn6hv7p29mr"; depends=[AICcmodavg boot car clarkeTest coda dplyr DT effects gamlss ggplot2 glue haven janitor jtools lattice latticeExtra magrittr MASS nnet optiscale rlang rstan survey tibble tidyr tidyselect xtable]; }; DAP = derive2 { name="DAP"; version="1.0"; sha256="0zzb05yxfaqp6qnr979q20rqy8sl5l825mxs0x9366qr7mz5k5ws"; depends=[MASS]; }; - DArand = derive2 { name="DArand"; version="0.0.1.0"; sha256="1d24p9r0szxw9z0dacsq2vxlbg9qh0lk3k7ynqr16jl2g1c86lry"; depends=[]; }; + DArand = derive2 { name="DArand"; version="0.0.1.1"; sha256="0cmwqbhi073zj8ipgib6a6ss6h4r0x2w541xl24jyk5xz3c6s697"; depends=[]; }; DBEST = derive2 { name="DBEST"; version="1.8"; sha256="1a598g02hpfgv572gchllqkppynnsp4lx764jg0g66w3b66k0kdy"; depends=[zoo]; }; DBGSA = derive2 { name="DBGSA"; version="1.2"; sha256="04zqh9y3nqcdzs5jn8aaq5idy9zl450ikvl788xs860wlg692qv2"; depends=[fdrtool]; }; DBI = derive2 { name="DBI"; version="1.1.1"; sha256="0i0kfyg43nryyka2bjlgz4x75w965224qp36wz1hl7a2lswb6ajp"; depends=[]; }; @@ -1016,6 +1019,7 @@ in with self; { DCCA = derive2 { name="DCCA"; version="0.1.1"; sha256="06xdx79r7dr14dlk5vgcyd8ar4sc72imlyk66bnia1kvlynvdy69"; depends=[checkmate]; }; DCD = derive2 { name="DCD"; version="0.1.0"; sha256="0p6vk8fdvpcvb1bb5fwy3h1v8y3djlvcm5jl5lnx30ngqj6d7rcj"; depends=[data_table doParallel foreach ggplot2 igraph lattice lsa Matrix plyr qlcMatrix Rdpack ROCR WGCNA]; }; DCEM = derive2 { name="DCEM"; version="2.0.4"; sha256="1g4c7h02rv467sgvjv19s0w4xcm11mwfamfs3sdy44ra9dgaf1af"; depends=[MASS matrixcalc mvtnorm Rcpp]; }; + DCEmgmt = derive2 { name="DCEmgmt"; version="0.0.1"; sha256="1vv212baycn0xkk2caj1f00ps1512261h21akmyqjhij3q4lxikx"; depends=[mlogit survival]; }; DCEtool = derive2 { name="DCEtool"; version="0.3.1"; sha256="05pmdd5ryv0jyqkqknjb33lvfcv4vqfqw46q231l5ixxcwapfvxr"; depends=[bslib commonmark DT htmltools idefix MASS mlogit readxl shiny shinycssloaders shinyglide shinyhelper shinyjs shinythemes stringr survival writexl]; }; DCG = derive2 { name="DCG"; version="0.9.3"; sha256="08718x6v3g7kpfv0gpgm19cn3d3ynj7yagzs0jic1j5rwvn04pfb"; depends=[]; }; DCGL = derive2 { name="DCGL"; version="2.1.2"; sha256="1dhkdvdglpsr0fzrfrrr6q76jhwxgrcjsiqn56s082y7v366xvs4"; depends=[igraph limma]; }; @@ -1023,7 +1027,7 @@ in with self; { DCLEAR = derive2 { name="DCLEAR"; version="1.0.8"; sha256="1riqsrzx9liq9fq9b4bfyfkixq879rzwa2yl202if8py42k1rnk5"; depends=[ape BiocGenerics BiocParallel dplyr igraph Matrix matrixStats phangorn purrr rBayesianOptimization Rcpp RcppArmadillo rlang stringr tidyr tidyverse]; }; DCODE = derive2 { name="DCODE"; version="1.0"; sha256="19dwms88q0ylxd92l3ivig8p8jjyhk8mhgz0l36m9pcq11gyjc0n"; depends=[seqinr]; }; DCPO = derive2 { name="DCPO"; version="0.5.3"; sha256="1h14xnii6kv6sc7pfxalif3bj0mifnxg46x4lwbixx9vzxxz96sq"; depends=[beepr BH dplyr forcats janitor purrr Rcpp RcppEigen rstan rstantools StanHeaders tibble tidyr]; }; - DCSmooth = derive2 { name="DCSmooth"; version="1.0.2"; sha256="0i2vf1d0kgi4i4yb1r6bis7mgh1vjqxj3msyrpvjz9iylywlg9vx"; depends=[astsa plotly Rcpp RcppArmadillo]; }; + DCSmooth = derive2 { name="DCSmooth"; version="1.1.2"; sha256="19pkj8z9wm4g8kxz1j3jw2n0bwldsyakipxvqpwnmlg2g5j8f5b1"; depends=[doParallel foreach fracdiff plotly Rcpp RcppArmadillo]; }; DCchoice = derive2 { name="DCchoice"; version="0.1.0"; sha256="0vfnw856ff0p6wrhv991sjcl65p40200p4k0xl3w4sdv5017xszz"; depends=[Formula interval MASS]; }; DChaos = derive2 { name="DChaos"; version="0.1-6"; sha256="0g1ld6big26gpj4p6dz0ncchqyspb73a8wd6h900b98hg32zidg6"; depends=[nnet outliers pracma sandwich xts zoo]; }; DCluster = derive2 { name="DCluster"; version="0.2-7"; sha256="008nyry64s5g80narcc58273v0jhqzfgwynka6mh7jgi7qsqnxjd"; depends=[boot MASS spdep]; }; @@ -1047,11 +1051,11 @@ in with self; { DEoptim = derive2 { name="DEoptim"; version="2.2-6"; sha256="1qg2d4d076a99qdjfg0yyq5z1xc1zlwydwry00nj2rx0hdykjqwc"; depends=[]; }; DEoptimR = derive2 { name="DEoptimR"; version="1.0-9"; sha256="04k5gi0a5hbm6znzvjaipbmkacp694krkqs38dkbxx1gymsallb1"; depends=[]; }; DFA = derive2 { name="DFA"; version="0.9.0"; sha256="0nk8k6xxqbbk1zhq3xsm59azvkj9499vp92pjl9xygasarim90rl"; depends=[]; }; - DFA_CANCOR = derive2 { name="DFA.CANCOR"; version="0.2.1"; sha256="0hbdvwb70s5r7lwfb21q5c2asqaqx2iciamppf4q9gz3m33kc9ql"; depends=[MASS MVN]; }; + DFA_CANCOR = derive2 { name="DFA.CANCOR"; version="0.2.2"; sha256="08p5ncs4kgz9njskpfqqw3dymgyxv5pb5cwbsm6rsbb2k4w3bhn8"; depends=[MASS MVN]; }; DFIT = derive2 { name="DFIT"; version="1.1"; sha256="1220ax93b9xwmq1crgl1fnf63gk72jqbra5b5q25wn6ynv1kilkx"; depends=[ggplot2 mirt msm mvtnorm simex]; }; DGCA = derive2 { name="DGCA"; version="1.0.2"; sha256="0k2a24ycagyxdx54dh9w8km25xhmmmhyyl26g76z4g5gqvcw092k"; depends=[matrixStats WGCNA]; }; DGEobj = derive2 { name="DGEobj"; version="1.0.3"; sha256="0n2i6y2vhhypn3sgsysvfpxdfvhb3fq7pz2lv71bnn1fz3lghbsx"; depends=[assertthat GenomicRanges magrittr stringr]; }; - DGEobj_utils = derive2 { name="DGEobj.utils"; version="1.0.3"; sha256="03h4ywzlidy0jzxxwgkzahz99856lhv25y9mvgsb0alh20c8x81j"; depends=[assertthat DGEobj dplyr edgeR IHW limma qvalue RNASeqPower statmod stringr sva tidyr zFPKM]; }; + DGEobj_utils = derive2 { name="DGEobj.utils"; version="1.0.4"; sha256="0mad5cph7bszb7xykgsd9gk5d2zb0kwvb4yjrh84zfdnxgw8799w"; depends=[assertthat DGEobj dplyr edgeR limma qvalue stringr sva]; }; DGLMExtPois = derive2 { name="DGLMExtPois"; version="0.1.3"; sha256="1prsnkkhb61y01flxz57875a9arvyy2qxjl0lz5ajpmf8dhr08j8"; depends=[COMPoissonReg nloptr progress]; }; DGM = derive2 { name="DGM"; version="1.7.3"; sha256="15dv56bh3fwxfam1smhjgwg0vzqq4c92gxwrhfz11frzh14gx7n8"; depends=[coin data_table ggplot2 Rcpp RcppArmadillo reshape2]; }; DHARMa = derive2 { name="DHARMa"; version="0.4.4"; sha256="1jpda8jpjpkkjh1cl28fzcx7fr7jz0czchsa0zr48wdg9zw7785m"; depends=[ape gap lme4 lmtest Matrix qgam]; }; @@ -1076,6 +1080,7 @@ in with self; { DJL = derive2 { name="DJL"; version="3.7"; sha256="0j8535gdn5h1rjc357w30sdmarmm9sx9n62fiji191wpk1mm1dmh"; depends=[car lpSolveAPI]; }; DLASSO = derive2 { name="DLASSO"; version="2.0.2"; sha256="0xdygf6h89d9z4kqb46iqfxgdzq9dmkrxf9ypw78l4d8n9xx2gaa"; depends=[MASS]; }; DLMtool = derive2 { name="DLMtool"; version="6.0.3"; sha256="00gh4di7ngn56v5hy7l5ybj6zg71fxaqyp1chmz22arb7rvj4q08"; depends=[dplyr ggplot2 MSEtool Rcpp]; }; + DMCfun = derive2 { name="DMCfun"; version="2.0.2"; sha256="1phzi3an03akf04q1j6s1dmqmfzg1r52ga7685wimcbxy4cbq323"; depends=[BH DEoptim dplyr pbapply Rcpp shiny tidyr]; }; DMLLZU = derive2 { name="DMLLZU"; version="0.1.1"; sha256="0ck87abcd5gkq69q1g5g0yshfhx94m3vgayvxgzgnkidn9mivx22"; depends=[caret gbm ISLR lmtest nnet randomForest rlang sandwich]; }; DMMF = derive2 { name="DMMF"; version="0.5.1.2"; sha256="0p82cfp0561j4ki20rznx46z7vqdxh128a0m0zj8d2wp3csn1aag"; depends=[raster rgdal sp]; }; DMRMark = derive2 { name="DMRMark"; version="1.1.1"; sha256="15wr6j0v9kvbv8y6flkp4svfqy059ziv89nxv91vp0pjmavhpdlz"; depends=[ellipse MCMCpack mvtnorm]; }; @@ -1116,7 +1121,7 @@ in with self; { DSI = derive2 { name="DSI"; version="1.3.0"; sha256="0c5phlhkwdx4w1szhn6ym2jc632mhpac417l2axl3a8jx63c1g25"; depends=[progress R6]; }; DSL = derive2 { name="DSL"; version="0.1-7"; sha256="05wj3zypr2kqfbka930qnwnk2r43pqi13pbs5n6lm8vdq4zjblw4"; depends=[]; }; DSLite = derive2 { name="DSLite"; version="1.3.0"; sha256="05wm02bwa4kcbg0q95368pnmnm0lpn6abk4ffliygha19d0pgpsf"; depends=[DSI R6]; }; - DSMolgenisArmadillo = derive2 { name="DSMolgenisArmadillo"; version="1.3.7"; sha256="1gswcxlz8pgdrp8z5mc9gcy74590aq7wsv9nv2yihmzlk8q5vgr6"; depends=[base64enc DSI httr MolgenisAuth stringr urltools]; }; + DSMolgenisArmadillo = derive2 { name="DSMolgenisArmadillo"; version="1.4.0"; sha256="036ha5m6q2i8s13mdgzs7r35j88z6xk2c8bdwn090akb0fqwq52y"; depends=[base64enc DSI httr MolgenisAuth stringr urltools]; }; DSOpal = derive2 { name="DSOpal"; version="1.3.1"; sha256="1f5lh3j7yfxa5rpcfknwqralnn108mg8813k8sclav8f2y3qh9pi"; depends=[DSI opalr]; }; DSSAT = derive2 { name="DSSAT"; version="0.0.4"; sha256="0wy1n1b2dnm6i1p18qrw43d42kgpp9dvg3zaim4277c6hsa7vw9p"; depends=[dplyr glue lubridate purrr readr rlang stringr tidyr]; }; DSWE = derive2 { name="DSWE"; version="1.5.1"; sha256="129dx5sf938pqpbqbar6zwma58m59if45pp7x6zwvnh2n03gaxy8"; depends=[BayesTree e1071 FNN gss KernSmooth matrixStats mixtools Rcpp RcppArmadillo]; }; @@ -1138,7 +1143,7 @@ in with self; { DTR = derive2 { name="DTR"; version="1.7"; sha256="1lzvk9ar6xf3n2vvy8vb9mvrbx3nafzzhvz5g7vf79jd71yz54jd"; depends=[aod ggplot2 survival]; }; DTRlearn2 = derive2 { name="DTRlearn2"; version="1.1"; sha256="0l756zb1wkpa1z5zjkc8jndmh2630gckxxfqslabzjmgsjf7fjgm"; depends=[foreach glmnet kernlab MASS Matrix]; }; DTRreg = derive2 { name="DTRreg"; version="1.7"; sha256="0fr2c8fg1acs2kk0r67zml5fp71mvxw116ixqf7yq34n9ljd5yph"; depends=[dplyr MASS]; }; - DTSg = derive2 { name="DTSg"; version="0.7.1"; sha256="0bqss8jrbd5ha373nkr38mnihchdzmprmvm7p82llxyshjym9gkb"; depends=[checkmate data_table R6]; }; + DTSg = derive2 { name="DTSg"; version="0.8.1"; sha256="19znfcwx9q97xjp52j7avq2qknlv9vd61nzmkya7j2l6q6rg0wrg"; depends=[checkmate data_table R6]; }; DTWBI = derive2 { name="DTWBI"; version="1.1"; sha256="06lp4yc5nhacrgic78l014g2w1ibwgs8dp8zrahk5aripaczl25y"; depends=[dtw e1071 entropy lsa rlist]; }; DTWUMI = derive2 { name="DTWUMI"; version="1.0"; sha256="0pybgbfs2yp2ljbs0kra5z70x3llkiwdngp6cadgs3j9rar4vq4q"; depends=[dtw DTWBI e1071 entropy lsa rlist]; }; DTwrappers = derive2 { name="DTwrappers"; version="0.0.2"; sha256="028n1211h9gmv050xfiw347x59gykb6ndvd371fdf53bbkqirqa4"; depends=[data_table]; }; @@ -1241,7 +1246,7 @@ in with self; { DirectEffects = derive2 { name="DirectEffects"; version="0.2.1"; sha256="0cjqp4gam1psd11d6h99pi3ramnaybp6bij86wbgqji2icqlvghg"; depends=[Formula glue sandwich]; }; DirectStandardisation = derive2 { name="DirectStandardisation"; version="1.3"; sha256="1qlfvzlig3a2v78fiq6sbbpxklmjczikxdw57m6mqngzrl9vdl2g"; depends=[]; }; DirectedClustering = derive2 { name="DirectedClustering"; version="0.1.1"; sha256="1shdqz0c5bbgknvfqr3ais26cb5mpywnah3d3584w97sy8v7gxm2"; depends=[igraph]; }; - Directional = derive2 { name="Directional"; version="5.0"; sha256="0dl90ail1ls800knfvkrjwjaiikjgkk3l59wk2k4c5jh2brng5al"; depends=[bigstatsr doParallel foreach RANN Rfast Rfast2 rgl]; }; + Directional = derive2 { name="Directional"; version="5.1"; sha256="1zx0554m40nipxg6dwh6mwl3z775m3lfby1q96hn43axvjnhhv7c"; depends=[bigstatsr doParallel foreach ggplot2 magrittr RANN Rfast Rfast2 rgl rnaturalearth rnaturalearthdata sf]; }; DirichletReg = derive2 { name="DirichletReg"; version="0.7-1"; sha256="1ql5mwb7zb06y9j6inrlngq7c15as4j17wd8kc71fxs0a2jdj7xi"; depends=[Formula maxLik]; }; DisHet = derive2 { name="DisHet"; version="1.0.0"; sha256="056jcs1qpiyadnmlzd0cj4kp0qzkichxi0pdnxypyq1fsqnpvan3"; depends=[gtools matrixStats]; }; DisImpact = derive2 { name="DisImpact"; version="0.0.15"; sha256="1cksc68gqvlah6rzlh1h7glsl55v9kxkayvv05hz6fkcds01qkga"; depends=[dplyr purrr rlang tidyr tidyselect]; }; @@ -1272,10 +1277,11 @@ in with self; { DockerParallel = derive2 { name="DockerParallel"; version="1.0.4"; sha256="1fgs2f5czb05fiqxqp00qggni041ml4s3x05h9n4mmka9mwxi34b"; depends=[jsonlite]; }; Dodge = derive2 { name="Dodge"; version="0.9-2"; sha256="0767n6hyspqrv5cgx3ghhai0qffj6haga7s86pv7mq8zvjcxjlzv"; depends=[]; }; Dominance = derive2 { name="Dominance"; version="1.2.0"; sha256="1z2gcs7myf90986gzw9g3914ph5cyg6pq6k53h4z566x883q8maz"; depends=[chron igraph]; }; + DominoPredictionLogging = derive2 { name="DominoPredictionLogging"; version="0.1.0"; sha256="1qzh8inzqk1s6cw9bsl7hazdf6cbfr11zs22723wl4xs31inp1lg"; depends=[lgr rjson uuid]; }; DoseFinding = derive2 { name="DoseFinding"; version="1.0-2"; sha256="15wpr8wiqjar9hlgcv8y2gjxv6531q3b69jxh2kq10k7bni3rshb"; depends=[lattice mvtnorm]; }; DoubleCone = derive2 { name="DoubleCone"; version="1.1"; sha256="1kbvsj93nn2306s6pgqiiznmlcn2nqsgcxinihl613ivczxhzpqg"; depends=[coneproj MASS Matrix]; }; DoubleExpSeq = derive2 { name="DoubleExpSeq"; version="1.1"; sha256="00xpj5xmpgmvp6h76imkmghrnlfk6c50ydvv0jram6m6ix3z8323"; depends=[numDeriv]; }; - DoubleML = derive2 { name="DoubleML"; version="0.4.0"; sha256="03anph79516b00im5j47hyrcmcjsyxqvd5904lyyjv8cy161bpcv"; depends=[checkmate clusterGeneration data_table mlr3 mlr3learners mlr3misc mlr3tuning mvtnorm R6 readstata13]; }; + DoubleML = derive2 { name="DoubleML"; version="0.4.1"; sha256="01mrak86wwyb83jnya0rk4wm4yp77sandzgkhzv8mia74w6p2h77"; depends=[checkmate clusterGeneration data_table mlr3 mlr3learners mlr3misc mlr3tuning mvtnorm R6 readstata13]; }; Dowd = derive2 { name="Dowd"; version="0.12"; sha256="1fgaq22n7gm8pqxdfkiayqgjfqjn7knjjjr1x12jgv77cv08xyjk"; depends=[bootstrap forecast MASS]; }; Dpit = derive2 { name="Dpit"; version="1.0"; sha256="02pnc00sk3bwxmxrg27638x0q62r7nsx2nr14zjjc5q880prdisv"; depends=[fitdistrplus gsl moments VGAM]; }; DrBats = derive2 { name="DrBats"; version="0.1.5"; sha256="1iaffippp9kwfrwryf7klmn8nsm2k8pc0bkgpxcsl4vxyy2na3mp"; depends=[ade4 coda MASS Matrix rstan sde]; }; @@ -1320,6 +1326,7 @@ in with self; { ECoL = derive2 { name="ECoL"; version="0.3.0"; sha256="02j4yl6hi83f6m529r6n0gaz8wsy2pi0ncy2g95fjhs8ib0kfn4f"; depends=[cluster e1071 FNN igraph MASS]; }; EDA = derive2 { name="EDA"; version="1.3"; sha256="08zqykvga7w07iy00c94q03mrxmjv649ggk7lmksjzy5j3wgyb6d"; depends=[ggplot2]; }; EDFIR = derive2 { name="EDFIR"; version="1.0"; sha256="0nv1badyg1dri6z91fvs68a72g22vdg0rpi3fkpxw527r11fvrrv"; depends=[geometry lpSolve MASS vertexenum]; }; + EDFtest = derive2 { name="EDFtest"; version="0.1.0"; sha256="1z6ayi0513ibyk0gjfxcd1rybp5374xhbf9zkkm669wdmfggx26h"; depends=[CompQuadForm rmutil]; }; EDISON = derive2 { name="EDISON"; version="1.1.1"; sha256="12cc13ng5fc4nm0nvqxqplpb2ycz4cln73xqkk85dka2fnpykjc7"; depends=[corpcor MASS]; }; EDMeasure = derive2 { name="EDMeasure"; version="1.2.0"; sha256="1gyv86vip0a3939dbbwz29xkqzncw24r68fzykdjnv3b995510iv"; depends=[dHSIC energy rBayesianOptimization]; }; EDNE_EQ = derive2 { name="EDNE.EQ"; version="1.0"; sha256="13aflnpznpzjrrdrn0r7v2mch6hjd77s6c3l7mnc2p59vq7mzmpg"; depends=[MASS]; }; @@ -1335,7 +1342,6 @@ in with self; { EFAutilities = derive2 { name="EFAutilities"; version="2.1.1"; sha256="0kdwdjv4c9rfy49qs7a4134vwa2sm2pcam17a3xii2dq8mghg1za"; depends=[GPArotation MASS mvtnorm plyr]; }; EFDR = derive2 { name="EFDR"; version="1.2"; sha256="1k6y2qxfw5py1brh25apmzqm00y3a458x0wrrmdg604g1m9zlkg5"; depends=[copula doParallel dplyr foreach gstat Matrix sp tidyr waveslim]; }; EFS = derive2 { name="EFS"; version="1.0.3"; sha256="1q8cf8dnxpv5s3lr9145y0wjhak4rz18dzah4xfs5qr4c8nlpl54"; depends=[party pROC randomForest ROCR]; }; - EGAnet = derive2 { name="EGAnet"; version="0.9.8"; sha256="1mdvp67wnbgmdhdwlgq8p20vhbv4m3fyvdw3zrcxy9zd8mchjydh"; depends=[dplyr GGally glasso igraph lavaan Matrix network NetworkToolbox qgraph semPlot]; }; EGRET = derive2 { name="EGRET"; version="3.0.6"; sha256="0klpfrq2392s56x5q5pxvli4m7ivn146dwyh1svqz9pngqnwbif3"; depends=[dataRetrieval fields foreach MASS survival truncnorm]; }; EGRETci = derive2 { name="EGRETci"; version="2.0.4"; sha256="1g01a03smn5yp261cyk3x310m1mcv4bqyh8y123wam9gpa7dxrp6"; depends=[binom EGRET]; }; EHR = derive2 { name="EHR"; version="0.4-4"; sha256="0b42ny3xc936qgbfgibywpmancrbdvkcwwhy55lbqlm8xhzyr6s8"; depends=[data_table lubridate pkdata]; }; @@ -1352,7 +1358,7 @@ in with self; { ELT = derive2 { name="ELT"; version="1.6"; sha256="0vbrf912m6f80sqyyrp0z4jhq38fnmcy6hgwy0qh8wgk3p1aqm7c"; depends=[lattice latticeExtra locfit xlsx]; }; ELYP = derive2 { name="ELYP"; version="0.7-5"; sha256="1j2vwcs443x3pf4zypyvbkn8fb5if9b9hf1s821jjjpgach573sc"; depends=[survival]; }; EM_Fuzzy = derive2 { name="EM.Fuzzy"; version="1.0"; sha256="0sz4zkjn6rdzdqmkq6j24bd4sj91y5lan31bldxdfskgz0jpzhbr"; depends=[DISTRIB FuzzyNumbers]; }; - EMAtools = derive2 { name="EMAtools"; version="0.1.3"; sha256="1kzna29kd6s2hgli5azrfz85mbyl1x6knvhhhny2scf7a1fcijsy"; depends=[DataCombine ggplot2 lmerTest sjstats]; }; + EMAtools = derive2 { name="EMAtools"; version="0.1.4"; sha256="0gx55ddw7dz1lm599i0gj15dlc3m58a8rf223hiykszb5c8bi372"; depends=[anytime DataCombine ggplot2 lmerTest plyr sjstats]; }; EMC = derive2 { name="EMC"; version="1.3"; sha256="0sdpxf229z3j67mr9s7z4adzvvphgvynna09xkkpdj21mpml23p6"; depends=[MASS mvtnorm]; }; EMCluster = derive2 { name="EMCluster"; version="0.2-13"; sha256="0d0zb6bppgbd5kyfzzckxk6w8v4gjvzk6k16xbhvq8gzcs7w4lhf"; depends=[MASS Matrix]; }; EMD = derive2 { name="EMD"; version="1.5.8"; sha256="0bvwx5ry41cpj646v93vm50c6qb3m5d7mda9q7znmcr4sdf521j5"; depends=[fields locfit]; }; @@ -1390,7 +1396,7 @@ in with self; { ETAS = derive2 { name="ETAS"; version="0.4.7"; sha256="1l8l0vmar720jz893kv8d2gg1m1jyxh1dkanh9aaiivdw0wg6k9b"; depends=[fields goftest lattice maps Rcpp spatstat spatstat_core spatstat_geom]; }; ETC = derive2 { name="ETC"; version="1.3"; sha256="1nvb9n0my7h1kq996mk91canxi6vxy3mzhrshrvm13ixvl48lkkh"; depends=[mvtnorm]; }; ETLUtils = derive2 { name="ETLUtils"; version="1.5"; sha256="0s0q4f3wzpdd87l3pnzysa8aq7zgz29589xnm65a6xfy9znbpzs3"; depends=[bit ff]; }; - EValue = derive2 { name="EValue"; version="4.1.2"; sha256="0339g1034sfkqdry6mf8ly962rk2prsm9q4lszjz9yifvarzxwyr"; depends=[boot dplyr ggplot2 metafor MetaUtility]; }; + EValue = derive2 { name="EValue"; version="4.1.3"; sha256="0ip4cyipbs6g0znrdh5zs4xizmqgdznq8riggkgyv06wipgx9a2j"; depends=[boot dplyr ggplot2 metadat metafor MetaUtility]; }; EW = derive2 { name="EW"; version="1.1"; sha256="0wc3v9qisiikvlp28xhlgsxb92fhkm6vslia6d0vpihyai0p1h1g"; depends=[]; }; EWGoF = derive2 { name="EWGoF"; version="2.2.2"; sha256="19gd9grjjdv6hilqj41g5qhz7m0ga40q88clwggbp5f0f1yd5sym"; depends=[Rcpp]; }; EWS = derive2 { name="EWS"; version="0.2.0"; sha256="0rkxnc5pwrjgm2j201rg0z4nqb75rpkqh3hff4lvw1zmnr9flm6r"; depends=[numDeriv]; }; @@ -1494,7 +1500,7 @@ in with self; { Exact = derive2 { name="Exact"; version="3.0"; sha256="0acm01njg3arlzwknv5v1sdsz5ab0bdh04sn1bmf91hcg3li8qd7"; depends=[rootSolve]; }; ExactCIdiff = derive2 { name="ExactCIdiff"; version="1.3"; sha256="1vayq8x7gk1fnr1jrlscg6rb58wncriybw4m1z0glfgzr259103y"; depends=[]; }; ExactMultinom = derive2 { name="ExactMultinom"; version="0.1.2"; sha256="1ygsiwcsmda0pbp7lzr03sb461mr9fff7hxp1lil40y9z0xgdmmb"; depends=[Rcpp]; }; - ExamPAData = derive2 { name="ExamPAData"; version="0.4.0"; sha256="1x901nf78hrb2124d894jwp65gr8bfrp4h161czwgx5a2zikn2f6"; depends=[]; }; + ExamPAData = derive2 { name="ExamPAData"; version="0.5.0"; sha256="1wjzg5b3xcl5njk95h2c8xz4k727d62182nbf49qrvd3nbd3bscj"; depends=[]; }; ExceedanceTools = derive2 { name="ExceedanceTools"; version="1.2.2"; sha256="084sc6pggfbcyavhfnd5whyigw7dyjhb4cxmxi0kh2jiam5k8v5b"; depends=[SpatialTools splancs]; }; ExcelFunctionsR = derive2 { name="ExcelFunctionsR"; version="0.1.4"; sha256="1j3vfvfk8lp46zb6fwvq9lafk7r2qrnx4vxyhaih71c0a8g6dz9n"; depends=[lubridate plyr roperators stringr tidyr]; }; ExcessMass = derive2 { name="ExcessMass"; version="1.0"; sha256="1z8l1lja02wxw8l72s3bq6sgjymn5929n123xk6b7ndd52zlfgf5"; depends=[]; }; @@ -1576,6 +1582,7 @@ in with self; { FMsmsnReg = derive2 { name="FMsmsnReg"; version="1.0"; sha256="0d58n7lz8d6xgzvyznmhw1byshyiiwk8dc462qr18cl51p0lqnkv"; depends=[mvtnorm]; }; FNN = derive2 { name="FNN"; version="1.1.3"; sha256="0cllqlnynm5yaj4r64mqyyfc8phkb38rwssq8k8ikgfgr4jklxny"; depends=[]; }; FOCI = derive2 { name="FOCI"; version="0.1.3"; sha256="0iax5569a0v18j2l52mw26yimx11fqqbxj5q7jgba9jf7ylp410w"; depends=[data_table gmp proxy RANN]; }; + FORTLS = derive2 { name="FORTLS"; version="1.0.5"; sha256="0k90x5vrg97nndif4grg14240m6gj8jsfr1lp3rgcx8h26gdlgq7"; depends=[dbscan Distance ggvoronoi htmlwidgets lidR moments plotly progress raster Rcpp RcppEigen RCSF scales sp tidyr vroom]; }; FPCA2D = derive2 { name="FPCA2D"; version="1.0"; sha256="18bb90ppd9gd8pg9jxfyfkmlsaqk8w25fgaj9fk18ybm2nhsxqm6"; depends=[corpcor]; }; FPCA3D = derive2 { name="FPCA3D"; version="1.0"; sha256="1hrk9caad2s76dx59clxhia45a85khk1y2ii7955f336x55q34a5"; depends=[]; }; FPDclustering = derive2 { name="FPDclustering"; version="2.0"; sha256="04anczbml5mpxi65qalafs5q4pign6abhqsc2birvvg23r3hhhfh"; depends=[cluster ExPosition GGally ggplot2 klaR MASS mvtnorm rootSolve ThreeWay]; }; @@ -1745,6 +1752,7 @@ in with self; { GBJ = derive2 { name="GBJ"; version="0.5.3"; sha256="12lsddkcxz37hn2fvjq158wb1bc6b3hx6wj8q8nj21zpmyl3n2qh"; depends=[BH mvtnorm Rcpp SKAT]; }; GCAI_bias = derive2 { name="GCAI.bias"; version="1.0"; sha256="10092mwpmfbcga0n39a0i6g8xxch8xiwg15cckipw6yxjyx0sivc"; depends=[]; }; GCD = derive2 { name="GCD"; version="4.0.7"; sha256="1259z76hajapzzq75fas2sq19r0wapn1ybghdaqdc6dksifdz6fv"; depends=[raster]; }; + GCPBayes = derive2 { name="GCPBayes"; version="3.1.0"; sha256="1239pr1i9q4sfy7az6jc8sh10xil5m2a70v9sm29ll53vsza73jj"; depends=[arm gdata invgamma MASS mvtnorm postpack Rcpp truncnorm usethis wiqid]; }; GCPM = derive2 { name="GCPM"; version="1.2.2"; sha256="0k2ng78bk3bxpj6nz80j5cvjd56zjz328ga68vyyc3hvdjgpspqj"; depends=[Rcpp RcppProgress]; }; GCSM = derive2 { name="GCSM"; version="0.1.1"; sha256="0apz1wh6nfpg2gyx12xnbdb3hjyrrpwlcrh5khn6cxhxm06q9l95"; depends=[Rcpp RcppArmadillo]; }; GCalcium = derive2 { name="GCalcium"; version="1.0.0"; sha256="0r84qmdsqsgpaqr08imh48mdvy26s2b62hi0hxxwhr9kg7qvj0rd"; depends=[caTools dplyr]; }; @@ -1754,6 +1762,7 @@ in with self; { GDAtools = derive2 { name="GDAtools"; version="1.7"; sha256="1fsx2kxilvfvm9nccn1a9ly6kavz9l8np6az2ax9dd00rbvqjcjl"; depends=[FactoMineR GGally ggplot2 ggrepel MASS nleqslv nnet RColorBrewer rlang wdm]; }; GDELTtools = derive2 { name="GDELTtools"; version="1.2"; sha256="1rx6kjh7kmyycqapvbizcxkcfp09qvqv7k8f25v333sxkacpz6p5"; depends=[plyr TimeWarp]; }; GDINA = derive2 { name="GDINA"; version="2.8.7"; sha256="08cdjp4mqn81j3wa770v7n8zkslys9jqqb3d3c09dkfmgdk6hga4"; depends=[alabama ggplot2 MASS nloptr numDeriv Rcpp RcppArmadillo Rsolnp shiny shinydashboard]; }; + GDPuc = derive2 { name="GDPuc"; version="0.5.1"; sha256="1pdhl8mccxb613994f3y59a89rvksi8kb7j2aaf7msnh67rndrrn"; depends=[cli crayon dplyr glue lifecycle magrittr rlang stringr tibble tidyselect]; }; GE = derive2 { name="GE"; version="0.2.2"; sha256="1lmldzsmnh13mp4vs3pzjfyzzam4ac4w9d749j61w5w4maawy6hc"; depends=[CGE data_tree DiagrammeR]; }; GEEaSPU = derive2 { name="GEEaSPU"; version="1.0.2"; sha256="02pwjqd94kranc1f69bx9rzk27kchavhvhl9fygjhrr40nwq3pbg"; depends=[gee Rcpp RcppArmadillo]; }; GEEmediate = derive2 { name="GEEmediate"; version="1.1.3"; sha256="1xprkpjp1pkq4ci1n32d3yy80hx3r4xf2j7f6hv7dvsn4cvdp417"; depends=[gee]; }; @@ -1779,7 +1788,7 @@ in with self; { GGClassification = derive2 { name="GGClassification"; version="0.1"; sha256="03wis5ng2mnfhp33xrag8xbmvjagzr1909a6x94wv7s2spji00rp"; depends=[Rcpp RcppEigen]; }; GGEBiplotGUI = derive2 { name="GGEBiplotGUI"; version="1.0-9"; sha256="0nd0ky3m1avy82z48g7hcysq0y0agxjxdn0g624dkm2w99avxw3j"; depends=[rgl tkrplot]; }; GGEBiplots = derive2 { name="GGEBiplots"; version="0.1.1"; sha256="1xnxaylikjd378flw3rqw36z27b2limkmyad97zhf1cbva317d1b"; depends=[gge GGEBiplotGUI ggforce ggplot2 scales]; }; - GGIR = derive2 { name="GGIR"; version="2.4-0"; sha256="15aljzy725x00grhphr2x5j8w5djf1z7wc3683vdji78q3znwj1b"; depends=[bitops data_table doParallel foreach GENEAread ineq matlab Rcpp signal tuneR unisensR zoo]; }; + GGIR = derive2 { name="GGIR"; version="2.5-0"; sha256="1w34hiandjq8xakybw6khdgqb7xwav3s7rp4pvxr330d6nazz9k9"; depends=[bitops data_table doParallel foreach GENEAread ineq matlab Rcpp signal tuneR unisensR zoo]; }; GGMncv = derive2 { name="GGMncv"; version="2.0.0"; sha256="1h1h2qx784f41ihmylj8zxhcxcd67r10qpz5938iynnr04mjm6l0"; depends=[ggplot2 glassoFast MASS mathjaxr numDeriv Rcpp RcppArmadillo Rdpack reshape]; }; GGMnonreg = derive2 { name="GGMnonreg"; version="1.0.0"; sha256="1bhqk172ddc7xq1hqj1i6q8np6jvmf2xypvd8kp3w1bcsafsbms8"; depends=[bestglm corpcor doParallel foreach GGally GGMncv ggplot2 MASS Matrix network poibin psych Rdpack sna]; }; GGMridge = derive2 { name="GGMridge"; version="1.1"; sha256="0zbfvvp7l836m118m8nmdvw1w7xq6d3b7qirskjsq1dkk23j41hs"; depends=[MASS mvtnorm]; }; @@ -1931,7 +1940,7 @@ in with self; { GeoLight = derive2 { name="GeoLight"; version="2.0.0"; sha256="1i49hyj3f5rcw0s6j2csnfwc6mnp5zn44vxjnk05wdkpw6dpvx5i"; depends=[changepoint fields maps MASS]; }; GeoMongo = derive2 { name="GeoMongo"; version="1.0.3"; sha256="0m5nz5q81jz2v2bl2dbgdbdprrkckxr2c67qn0cg9vms0pi3fawr"; depends=[data_table geojsonR R6 reticulate]; }; GeoRange = derive2 { name="GeoRange"; version="0.1.0"; sha256="0krj9570wkhdvpaqkq3nf0maglqd44mpwn4v1bymvgpk1i1wf5p3"; depends=[moments proj4 raster sp velociraptr]; }; - GeoTcgaData = derive2 { name="GeoTcgaData"; version="1.0.1"; sha256="1055qdnf003j7pg0mphwk2ilghnyz7i3yvdy5yj3yjz96drapl3p"; depends=[cqn data_table magrittr plyr]; }; + GeoTcgaData = derive2 { name="GeoTcgaData"; version="1.0.2"; sha256="1s3l445igzf1xirfxjkp34djcfipbpcgyd5fd3icnsy2dkfkc787"; depends=[cqn data_table magrittr plyr]; }; GeodRegr = derive2 { name="GeodRegr"; version="0.2.0"; sha256="029yclgi4np000yh42j68v32m32lq2hmkh94q33hh1qkx8rilfa7"; depends=[MASS zipfR]; }; GeodesiCL = derive2 { name="GeodesiCL"; version="1.0.0"; sha256="1i3i6vlh3nnb7z6qzh2cd6cqka78bfdly952x5ryl7cb2590a4pc"; depends=[dplyr htmltools leaflet leafpop magrittr mapview profvis readr rgdal sp tibble]; }; GeomComb = derive2 { name="GeomComb"; version="1.0"; sha256="05xb6m2ciszxd13yhqdkildh9nsq19ss8885ngj6ynvbchqkii7r"; depends=[forecast ForecastCombinations ggplot2 Matrix mtsdi psych]; }; @@ -2007,7 +2016,7 @@ in with self; { HCR = derive2 { name="HCR"; version="0.1.1"; sha256="14s46dyw3ifp3pwwlcwbbl47i6hy2whjj1n65i28am5a33nycgha"; depends=[data_table]; }; HCTR = derive2 { name="HCTR"; version="0.1.1"; sha256="1hg8mpallwxpmamk6q8x87w5hlqqwvbahfw5zmr9pisiagbwcsay"; depends=[glmnet harmonicmeanp MASS ncvreg Rdpack]; }; HCmodelSets = derive2 { name="HCmodelSets"; version="1.1.2"; sha256="05w742g89r0hr90awwjqlszib2jjfly52l9c7ag3n22vg4d1ixw1"; depends=[ggplot2 mvtnorm survival]; }; - HDBRR = derive2 { name="HDBRR"; version="1.1.1"; sha256="0l1knpk165wbs235jgdc5rg60l0z2n15yg3cx8whqf71d8fqn5i9"; depends=[bigstatsr MASS numDeriv]; }; + HDBRR = derive2 { name="HDBRR"; version="1.1.2"; sha256="0xaj6h7llkmqizmcmivislx3yszqypdcnlrrs8xzandfbzfkyk1q"; depends=[bigstatsr MASS numDeriv]; }; HDCI = derive2 { name="HDCI"; version="1.0-2"; sha256="0wxbv54kbygymhh4r7052vnbj603c1kya01ykvmqzzkjyyfzidkz"; depends=[doParallel foreach glmnet iterators lattice Matrix mvtnorm slam]; }; HDCurves = derive2 { name="HDCurves"; version="0.1.0"; sha256="1ifcbwcqgdxicqxcqrsl9kp3zadxhijpwff8ln309378vybr3gh1"; depends=[]; }; HDDesign = derive2 { name="HDDesign"; version="1.1"; sha256="1jim4h9bwn8r637va7m81kwwsfwyzs9pzn5a9i7c8xz8b1x191bj"; depends=[]; }; @@ -2017,7 +2026,7 @@ in with self; { HDMD = derive2 { name="HDMD"; version="1.2"; sha256="0na0z08fdf47ghfl2r3fp9qg5pi99kvp7liymwxym2wglkwl4chq"; depends=[MASS psych]; }; HDMT = derive2 { name="HDMT"; version="1.0.3"; sha256="15p8n1schk5i708k3h7ly5a8rxhm6jivjdlqkica5mzghl2bqa37"; depends=[fdrtool]; }; HDPenReg = derive2 { name="HDPenReg"; version="0.94.7"; sha256="16kmx3lddjvz8k7sric0s9ajhlgp62gf1zkyiscaf7w0pjwzin28"; depends=[Matrix Rcpp rtkore]; }; - HDShOP = derive2 { name="HDShOP"; version="0.1.1"; sha256="1pryl763jsw31zhginhw9aqgl1879mcarkqkw5pvjp1yxkb06w0z"; depends=[Rdpack]; }; + HDShOP = derive2 { name="HDShOP"; version="0.1.2"; sha256="0qnxgp7fjinj9c96w724nxvmb2xbihj2wd6ysibr5dk4rvlq16p0"; depends=[Rdpack]; }; HDSpatialScan = derive2 { name="HDSpatialScan"; version="1.0.2"; sha256="0j6frhnxbchy2r425zhx952vvdivrpcrq0440rr4mbr4rla2ci4s"; depends=[DT fmsb matrixStats plotrix purrr Rcpp RcppArmadillo rgdal rgeos sp SpatialNP swfscMisc TeachingDemos]; }; HDTSA = derive2 { name="HDTSA"; version="1.0.0"; sha256="1mphx55ibw8rlv5cz7vr8m3sgyl0qz0nfk26mcnnfsk38x6hl9zc"; depends=[clime Rcpp RcppEigen sandwich]; }; HDclassif = derive2 { name="HDclassif"; version="2.2.0"; sha256="1l5zxhayhzh7q50ycl481hy0br66ylxyvzw1ahmjjrdkm8s3czyj"; depends=[MASS rARPACK]; }; @@ -2208,7 +2217,7 @@ in with self; { INQC = derive2 { name="INQC"; version="2.0.5"; sha256="1gz7gyq5n2bmh18yrg29nz8kmdc0b35chwqxr6y2sggdm8j28akd"; depends=[evd gdata suncalc]; }; INSPIRE = derive2 { name="INSPIRE"; version="1.5"; sha256="0938l50yxnb5q628mp874ayx9ybvcjddis20y1hzm5cmlsg0hqhg"; depends=[missMDA]; }; INTRIGUE = derive2 { name="INTRIGUE"; version="0.1.0"; sha256="1l1vfl0m4iqniwp4bp1bfjpqhwahg341fpyxhryr0j8lypqaw7si"; depends=[dplyr rlist SQUAREM]; }; - IOHanalyzer = derive2 { name="IOHanalyzer"; version="0.1.5.2"; sha256="09id0v0bxibg769wn5fz11rkz2d5wrfhix0c3y94ms6b7nhkg2rd"; depends=[bsplus colorRamps colorspace colourpicker data_table dplyr DT ggplot2 httr kableExtra knitr magrittr markdown plotly RColorBrewer Rcpp reshape2 shiny shinyjs stringi]; }; + IOHanalyzer = derive2 { name="IOHanalyzer"; version="0.1.6.1"; sha256="0iipdksj9bxcf3k2acm6ay1sjk9hcp860kqf7dflvcmf3i271rfc"; depends=[bsplus colorRamps colorspace colourpicker data_table dplyr DT ggplot2 httr kableExtra knitr magrittr markdown plotly RColorBrewer Rcpp reshape2 shiny shinydashboard shinyjs stringi]; }; IOHexperimenter = derive2 { name="IOHexperimenter"; version="0.1.4"; sha256="0aacliznncl488rjsnx02pfj1mchhcyb36v816g959ll38pvc6bk"; depends=[assertthat BH magrittr Rcpp]; }; IPCAPS = derive2 { name="IPCAPS"; version="1.1.8"; sha256="17ifkgjjnvvcc8dp065ng4ad9lr85lcdcb401vi84yy8m2llbypw"; depends=[apcluster expm fpc KRIS LPCM MASS Matrix Rmixmod]; }; IPCWK = derive2 { name="IPCWK"; version="1.0"; sha256="0hah1xl6zli0346jh57rjc5x8vynhaysj0l481rmvznsghv6im23"; depends=[MASS survival]; }; @@ -2374,7 +2383,7 @@ in with self; { KMunicate = derive2 { name="KMunicate"; version="0.2.1"; sha256="19bsnixy59jqpj414827l2r65jimf0swxg36bi90s3pr4mvf7snq"; depends=[checkmate cowplot ggplot2 pammtools survival tidyr]; }; KNNShiny = derive2 { name="KNNShiny"; version="0.1.0"; sha256="16zm8bhdivaap3mvhdx2qn1b1j2iqyarclb0y2qd1n4viwcfm9c1"; depends=[caret dplyr e1071 FNN psycho rhandsontable rmarkdown shiny]; }; KOBT = derive2 { name="KOBT"; version="0.1.0"; sha256="0dw6s68x95d4z5a6p8bs1368jcxv5jx0wd87js28i2qm3q57ss71"; depends=[glmnet knockoff MASS Rdpack spcov xgboost]; }; - KODAMA = derive2 { name="KODAMA"; version="1.7"; sha256="1ns3by43z144h697lphjvw94fvmy8dc18jq6kpwpxmra4rvkmk2p"; depends=[minerva Rcpp RcppArmadillo]; }; + KODAMA = derive2 { name="KODAMA"; version="1.8"; sha256="0i1lwjzxjpm9yng763hkbi88q13i9bhcwwin6b3lkif34r4c3n8y"; depends=[minerva Rcpp RcppArmadillo]; }; KOGMWU = derive2 { name="KOGMWU"; version="1.2"; sha256="1vz0099gp1r10n7w4p480l8rswdw100sns196d9xin2ibmmd2fx9"; depends=[pheatmap]; }; KONPsurv = derive2 { name="KONPsurv"; version="1.0.3"; sha256="1qijx7b6idjy23kqb5l58l6nc6dh35vrkxv370qpj3y2gvvn9d6x"; depends=[Rcpp survival]; }; KPC = derive2 { name="KPC"; version="0.1.0"; sha256="1kgrkhhvjkhirp04fgf36x5v5f7ba2yczj11fdk3l12k5k0dx621"; depends=[data_table emstreeR gmp kernlab proxy RANN]; }; @@ -2396,7 +2405,7 @@ in with self; { KernSmooth = derive2 { name="KernSmooth"; version="2.23-20"; sha256="0fgclmzk3ksjsh3j47jqzm3jhqrwn12rkp7f84yr6wr43q2pbsr0"; depends=[]; }; KernSmoothIRT = derive2 { name="KernSmoothIRT"; version="6.4"; sha256="0qqlmcd04m89pmhrbmxxx4lzzb6sksgrm0j8x7fs5r0sxdqy6rcp"; depends=[plotrix Rcpp rgl]; }; KernelICA = derive2 { name="KernelICA"; version="0.1.0"; sha256="1yq7w24qq23c81a9y0jn36iw7zjbxsj3b3p1rq6yl0lanzda9bsr"; depends=[ICtest inline JADE ManifoldOptim Rcpp RcppArmadillo RcppEigen]; }; - KernelKnn = derive2 { name="KernelKnn"; version="1.1.3"; sha256="0q74blyngfbqr1xvhsylchl6drl41hqk5gipvwamxdy9202jwsag"; depends=[Rcpp RcppArmadillo]; }; + KernelKnn = derive2 { name="KernelKnn"; version="1.1.4"; sha256="07sjf3ambfih34gm2gkall4h60jy9am8dvakr71wk0lsabih3wqx"; depends=[Rcpp RcppArmadillo]; }; Kernelheaping = derive2 { name="Kernelheaping"; version="2.2.8"; sha256="0abv5cq9vjdb8jy3niv6xj3gyz4i1l9h7227lrldq43w049i04jx"; depends=[fastmatch fitdistrplus GB2 ks magrittr MASS mvtnorm plyr sp sparr]; }; Keyboard = derive2 { name="Keyboard"; version="0.1.0"; sha256="12i9zfpbh2297j78yrz6nnbmj926n3xdkbzmy1p9z7g9bi4cqrp1"; depends=[Iso Rcpp]; }; KingCountyHouses = derive2 { name="KingCountyHouses"; version="0.1.0"; sha256="17l415v290lm99rsifpk6324mm1sk79ns4cvjkyh9ibj8n7l44c1"; depends=[]; }; @@ -2546,7 +2555,7 @@ in with self; { LearnGeom = derive2 { name="LearnGeom"; version="1.5"; sha256="1pnxiwjkdj78p4hkl1lqagmd937q63yncb45fcra28sa9v9psrcs"; depends=[]; }; LearningRlab = derive2 { name="LearningRlab"; version="2.2"; sha256="15lkcrdfdrip1s4rpsn6kshjzsg1hfryh6lgbiqw9x2h0xvfj4da"; depends=[crayon magick]; }; LearningStats = derive2 { name="LearningStats"; version="0.1.0"; sha256="0xrrb6jws4zj2nwnn30g338bib49b7j26v52ym7p2variwllz068"; depends=[data_table haven readODS readxl]; }; - LexFindR = derive2 { name="LexFindR"; version="1.0.1"; sha256="0c2bw973wapbxm00094blvg3k778pikrqqn3ry2b09lq17bx8xgp"; depends=[]; }; + LexFindR = derive2 { name="LexFindR"; version="1.0.2"; sha256="16ikw3s034zqgfcp2hiyhv1nq5kp65wpq1d8fclrlqiabilyk7x4"; depends=[]; }; LexisPlotR = derive2 { name="LexisPlotR"; version="0.4.0"; sha256="0vlm8wcaj3755cbxrfb7ybla9znd2cbklw2xwyyn6r9i4c9xsfih"; depends=[dplyr ggplot2 tidyr]; }; LibOPF = derive2 { name="LibOPF"; version="2.6.1"; sha256="01j3jzhi337dmblcm1d79i4cbp159z6k54ybpyzfasjfnp7qizz6"; depends=[]; }; LiblineaR = derive2 { name="LiblineaR"; version="2.10-12"; sha256="0r5xbklbfgflwlmkh4i0bsdyqcjs1b4lvxr20f4fhajmkj83gqrs"; depends=[]; }; @@ -2635,7 +2644,7 @@ in with self; { MBCbook = derive2 { name="MBCbook"; version="0.1.1"; sha256="0jmvgyzrahnxfkwdn86k3ffk0zfbbd34ya4zmlnsmp2m9xds7lgn"; depends=[MASS mclust mvtnorm Rmixmod]; }; MBCluster_Seq = derive2 { name="MBCluster.Seq"; version="1.0"; sha256="0xbi2r0g0gzsy05qrq1ljr5f5s3glwxj204vk2f1lgwdx3fd116m"; depends=[]; }; MBESS = derive2 { name="MBESS"; version="4.8.1"; sha256="09r9rkyprajrq30v671xsf1q5nmy2fijw19dd73rpnfmdg3nqiyf"; depends=[boot lavaan MASS mnormt nlme OpenMx sem semTools]; }; - MBHdesign = derive2 { name="MBHdesign"; version="2.1.9"; sha256="1bv5h59q83jkfb3h7siwj9h2cwc1qmwld48xy8bfipznycfi77al"; depends=[class geometry mgcv mvtnorm randtoolbox]; }; + MBHdesign = derive2 { name="MBHdesign"; version="2.1.11"; sha256="0qybdkzmgfpsrqpmxa91kbq2cxhalj3vfvxjj31lic6kk56dllj4"; depends=[class geometry mgcv mvtnorm randtoolbox]; }; MBI = derive2 { name="MBI"; version="1.0"; sha256="1lb0sjwa6x360n9a9pagz6yhxh37gxq1fk0f5c3i2sd56ny9jpns"; depends=[]; }; MBNMAdose = derive2 { name="MBNMAdose"; version="0.3.0"; sha256="12ij19828nd1r0x1vp7clkwr0zfksk3f755xghzylz0ryjjb716d"; depends=[checkmate dplyr formatR igraph magrittr R2jags Rdpack reshape2 rgeos rjags scales utf8]; }; MBNMAtime = derive2 { name="MBNMAtime"; version="0.2.1"; sha256="1qm8g9hljl3qsnh434dzg2y0iyq635ym1ygfzr0q8l6h76qr7p1j"; depends=[checkmate dplyr knitr magrittr R2jags Rdpack reshape2 rjags]; }; @@ -2719,7 +2728,6 @@ in with self; { MIIPW = derive2 { name="MIIPW"; version="0.1.0"; sha256="05l75pr81fv7b7w24mhvww5c49211bnxvksvy7kiwypc592zwjqk"; depends=[matlib R2jags]; }; MIIVsem = derive2 { name="MIIVsem"; version="0.5.8"; sha256="1qb1xrxhgj6b0l24spbp80f0rm8v41bqsdachqjhsacq2lgga259"; depends=[boot car lavaan Matrix numDeriv]; }; MILC = derive2 { name="MILC"; version="1.0"; sha256="14xsiw5al6kixwvf3ph0dlm8s13gsbqvzb92da6ng3x4iiyb1g0w"; depends=[]; }; - MIMSunit = derive2 { name="MIMSunit"; version="0.11.0"; sha256="03mzjf86qs9kqpqn9vqspfv4jkx52s3yvgr3nk1p28w5qhdi2nq5"; depends=[caTools dplyr dygraphs ggplot2 lubridate magrittr matlab plyr R_utils RColorBrewer readr shiny signal stringr tibble xts]; }; MINTplates = derive2 { name="MINTplates"; version="1.0.1"; sha256="1jj51314p2ni3f3ncpd8gp7pgshhsp97ic123d732sc9xr0h5rnr"; depends=[]; }; MIPHENO = derive2 { name="MIPHENO"; version="1.2"; sha256="0hcaq66biv4izszdhqkgxgz91mgkjk1yrwq27fx07a2zmzj44sfv"; depends=[doBy gdata]; }; MIRES = derive2 { name="MIRES"; version="0.1.0"; sha256="17k6f73qx85klhhn247nr6h7sinpabq9crlc5ag7qm6z7k6mr370"; depends=[BH cubature dirichletprocess Formula HDInterval logspline mvtnorm nlme pracma Rcpp RcppEigen rstan rstantools StanHeaders truncnorm]; }; @@ -2890,12 +2898,12 @@ in with self; { MatchIt = derive2 { name="MatchIt"; version="4.3.0"; sha256="0ijlv2gggxc6b9k0zcbni1dass1n4b312w66rgafn6bw3aw7m2fa"; depends=[backports Rcpp RcppProgress]; }; MatchLinReg = derive2 { name="MatchLinReg"; version="0.7.3"; sha256="1si0zn6vlgyj08841hfjx8an96a8ipnawl4zbalabmpy7r5bfwx8"; depends=[Hmisc Matching]; }; MatchThem = derive2 { name="MatchThem"; version="1.0.1"; sha256="1g3vzbxrbmgmxlnn6i2i1wdk949i547ywgxcw05na71kc1nvwvfd"; depends=[MatchIt mice rlang survey WeightIt]; }; - Matching = derive2 { name="Matching"; version="4.9-10"; sha256="1fbbn7az1qxsddw1lgzxg50l4ndbldw78pkfdip05bkjcbwksh16"; depends=[MASS]; }; + Matching = derive2 { name="Matching"; version="4.9-11"; sha256="123np8gwjrbmkl65kj7qfa52i9msnkjyhvj4pwwqh5mkca2clw8w"; depends=[MASS]; }; Matrix = derive2 { name="Matrix"; version="1.3-4"; sha256="0fbcbysp3vaivmp1yasmp8mdsldhr826vfs4vyxrjpjl8jfifhmb"; depends=[lattice]; }; Matrix_utils = derive2 { name="Matrix.utils"; version="0.9.8"; sha256="0a5fq1scykqk0kc9j051j6fix6j2dqwz5wbgb0amaxsiywz9vigb"; depends=[grr Matrix]; }; MatrixCorrelation = derive2 { name="MatrixCorrelation"; version="0.9.5"; sha256="192pmfm8csvs2lf2hxpsj542lrd8b74rg4wzmz3s3m9i98pd0h4d"; depends=[plotrix pracma progress Rcpp RcppArmadillo RSpectra]; }; MatrixEQTL = derive2 { name="MatrixEQTL"; version="2.3"; sha256="10r6h5bidj44kfbwiml9pkysbikqphfb21ig61qnx0qa12xcl6l8"; depends=[]; }; - MatrixExtra = derive2 { name="MatrixExtra"; version="0.1.7"; sha256="13zckc0zccw5l459rpsr7spcp1l3rxd5x6fz686vv8ck3zgvl5sc"; depends=[float Matrix Rcpp RhpcBLASctl]; }; + MatrixExtra = derive2 { name="MatrixExtra"; version="0.1.8"; sha256="1115z5mk7pmb4v4zcdrcbgwv7ifj2417r6705ksp0b2qkp62ny6j"; depends=[float Matrix Rcpp RhpcBLASctl]; }; MatrixLDA = derive2 { name="MatrixLDA"; version="0.2"; sha256="0fixq35gp0fzmin75sfld2ln0zvnjgzrhk3b5yi7wdqzp99200yy"; depends=[glasso plyr Rcpp RcppArmadillo]; }; MatrixMixtures = derive2 { name="MatrixMixtures"; version="1.0.0"; sha256="0l9f7sicigp88rqi2bn4bmlrb130qvyikn4mlfphcpa16rvk37dq"; depends=[doSNOW foreach snow withr]; }; MatrixModels = derive2 { name="MatrixModels"; version="0.5-0"; sha256="1va6i6bpkq71rzl9i4xgyc5x7qcksa3nfzihlaggf6aj30dayzx8"; depends=[Matrix]; }; @@ -2916,7 +2924,6 @@ in with self; { MedSurvey = derive2 { name="MedSurvey"; version="1.1.1.3.0"; sha256="11lkli2arl5w2aizzd93fb6xsy30000nf3qc08qirrm07rwypaly"; depends=[lavaan Matrix survey]; }; MediaK = derive2 { name="MediaK"; version="1.0"; sha256="19cmxl2wksw9kvjsfn1m4nkr5gpcx6bk0sqrabj1n0dla1l32v2a"; depends=[Rcpp RcppEigen]; }; Mediana = derive2 { name="Mediana"; version="1.0.8"; sha256="0j1ikc2iaxl70134v0gijj2i2g0xgjafvn8rc108r9fhm8rpw564"; depends=[doParallel doRNG foreach MASS mvtnorm survival]; }; - MedianaDesigner = derive2 { name="MedianaDesigner"; version="0.5"; sha256="1nd6sgqxx76yz6fyvdlvqvk7bg7dq8w4laamkabnzha35fsz567y"; depends=[devEMF flextable mvtnorm officer Rcpp RcppEigen RcppNumerical shiny shinydashboard shinyMatrix]; }; MendelianRandomization = derive2 { name="MendelianRandomization"; version="0.5.1"; sha256="1qi5v4m19025zcigl6wxmj3vi6zjlzgsm6cj75kywq2qabrzk2fw"; depends=[ggplot2 glmnet iterpc knitr Matrix plotly quantreg rjson rmarkdown robustbase]; }; Mercator = derive2 { name="Mercator"; version="1.1.1"; sha256="0jg5dm65smq67k35p8acqd5kdsv7py8plaamagbsc84617r0iaik"; depends=[ClassDiscovery cluster dendextend flexmix igraph KernSmooth kohonen Polychrome Rtsne Thresher umap]; }; MetABEL = derive2 { name="MetABEL"; version="0.2-0"; sha256="0rqjv85mgswrbbp8b8ip6cdmz0cvfy9lm5mcr8a7h38rzgx3g3i3"; depends=[]; }; @@ -2937,7 +2944,7 @@ in with self; { MetaPath = derive2 { name="MetaPath"; version="1.0"; sha256="1vvpfv6yc4rd4apqfs2yzm97xxsv43ghwqnjq6w1xrc4pdx2p634"; depends=[Biobase genefilter GSEABase impute]; }; MetaStan = derive2 { name="MetaStan"; version="0.4.0"; sha256="1qdb1y4hwkrhdyhjvig7vfybz0ixmm6w85yq0bmapxj10qs8ars9"; depends=[BH Rcpp RcppEigen rstan rstantools StanHeaders]; }; MetaSubtract = derive2 { name="MetaSubtract"; version="1.60"; sha256="19xg95g2qgyi90pz3733l596gzdj6dmb0k9i4qmhaq4yck69rrhj"; depends=[]; }; - MetaUtility = derive2 { name="MetaUtility"; version="2.1.1"; sha256="1v37rpycciwrcwzs69qqb4c8nk2wg3ilaimaqbbfzvl33h1hhqwd"; depends=[dplyr metafor purrr rlang stringr tidyr]; }; + MetaUtility = derive2 { name="MetaUtility"; version="2.1.2"; sha256="0pddp4h7jk2y140yiw4j5661011v1ym1dnb4ds9ai6i3iic23373"; depends=[dplyr metadat metafor purrr rlang stringr tidyr]; }; MetaboList = derive2 { name="MetaboList"; version="2.0"; sha256="10skvf14ls4qll0l9p6cig4lmj7138khcksyjvd1pqym9axk3wxn"; depends=[dplyr enviPick ggplot2 scales]; }; MetaboQC = derive2 { name="MetaboQC"; version="1.1"; sha256="1rrhssm882xkp6ydgy3qba9c7ww3p6vxy04z4v7v6v7ilc5bvrgi"; depends=[plyr]; }; MetabolAnalyze = derive2 { name="MetabolAnalyze"; version="1.3.1"; sha256="070qws759nczjrfdlh7jpbyjz4z3zm1hzb7vcvfgfks82wwb2ny0"; depends=[ellipse gplots gtools mclust mvtnorm]; }; @@ -2964,7 +2971,7 @@ in with self; { MicroMacroMultilevel = derive2 { name="MicroMacroMultilevel"; version="0.4.0"; sha256="1q5cyqr4hdl1wp2isk6p4p084i83kg6hd406wdp1nj9lv5i0xvgw"; depends=[]; }; MicroNiche = derive2 { name="MicroNiche"; version="1.0.0"; sha256="166ci4crkwnnh05rhs5hyrljgm4cdf7gp0ff8kjxjmd60byw80mz"; depends=[ggplot2 reshape2]; }; MicroSEC = derive2 { name="MicroSEC"; version="1.1.3"; sha256="1imdxm15f792xw5kc9lhry5jsw739j6y3f2fs64abj22hqxfwypi"; depends=[BiocGenerics Biostrings data_table dplyr GenomeInfoDb GenomicAlignments gtools magrittr openxlsx R_utils Rsamtools stringr tidyr]; }; - Microsoft365R = derive2 { name="Microsoft365R"; version="2.3.1"; sha256="1vwhrfrqms0l7vprzbchwkfsijzdpirvvaxv018hlm7qh92yf4rx"; depends=[AzureAuth AzureGraph curl httr jsonlite mime R6 vctrs]; }; + Microsoft365R = derive2 { name="Microsoft365R"; version="2.3.2"; sha256="1qc4716mvkfvxwkzjihf00my6y4va3day3lnh5iwpb5k9kgrnhgm"; depends=[AzureAuth AzureGraph curl httr jsonlite mime R6 vctrs]; }; MinBAR = derive2 { name="MinBAR"; version="1.1.2"; sha256="099afazil0gfs5yq92clc7ahis5azyvlql4zs7fhp82v9m6b80qj"; depends=[dismo ecospat geosphere lattice latticeExtra maxnet raster rgdal sp]; }; MinEDfind = derive2 { name="MinEDfind"; version="0.1.3"; sha256="1y0iv92mp7hf14vrj54qd0yvmjrv52jv3vg25kc5q7pml63njkqa"; depends=[ggplot2 gridExtra Iso]; }; MindOnStats = derive2 { name="MindOnStats"; version="0.11"; sha256="13995v4n0hfb53w02jk81pl7nazkvqwwv87y1sr99jr9ppzc08mz"; depends=[]; }; @@ -3216,7 +3223,7 @@ in with self; { Nozzle_R1 = derive2 { name="Nozzle.R1"; version="1.1-1"; sha256="05sjip4sz12mwd3jcbvk342p83kdmrd4l2jrh17p18w4l7w4nn0z"; depends=[]; }; Numero = derive2 { name="Numero"; version="1.8.4"; sha256="0kkska60ilk3lqf5w6z21pjldipg4pky0qgzpbsl69ial62z8xsy"; depends=[Rcpp]; }; NutrienTrackeR = derive2 { name="NutrienTrackeR"; version="1.1.0"; sha256="1xik2q229vkh34q211b6a1pij9fvcs0wik0ypl4j1jlfvl673rz8"; depends=[ggplot2 shiny]; }; - OAIHarvester = derive2 { name="OAIHarvester"; version="0.3-2"; sha256="1vwi3dvpnlap1w96xc4q0cv7lym616sf4rgdqim250nsw5ciyiwx"; depends=[curl xml2]; }; + OAIHarvester = derive2 { name="OAIHarvester"; version="0.3-3"; sha256="00j5f6kw67qr83cmds9y5rzwiv2sb2b2bfbr5cclpr3wcsw278fs"; depends=[curl xml2]; }; OBASpatial = derive2 { name="OBASpatial"; version="1.8"; sha256="1xc4qz3i5pphgf17asyiafdnlhv5k88rw0fwkwfh8cz767wip1hw"; depends=[cubature HDInterval invgamma LaplacesDemon modeest mvtnorm truncdist]; }; OBMbpkg = derive2 { name="OBMbpkg"; version="1.0.0"; sha256="01wch8wwij3fd0jambk0hpkhlnp4ryrq8qnnr2w1iad9zssjyii5"; depends=[]; }; OBsMD = derive2 { name="OBsMD"; version="6.1"; sha256="0jvvcx2lc39rdnlbhykam6cf94lbci9zc1vshwfhvygblnmjgrzr"; depends=[]; }; @@ -3272,7 +3279,7 @@ in with self; { OjaNP = derive2 { name="OjaNP"; version="1.0-0"; sha256="0xddspnnwlcxh2i66ilh6i920k53y7fv6m1hgj9h28qg2wy0vyah"; depends=[ICS ICSNP Rcpp]; }; OkNNE = derive2 { name="OkNNE"; version="1.0.0"; sha256="0ggx508cqkqc51qw10cajm8r3k5h474n7y8dgck2fr4db047zmcm"; depends=[FNN]; }; OmegaG = derive2 { name="OmegaG"; version="1.0.1"; sha256="1aihcrgml67rvnx9vpnq2nnbc79kicw4ks1fradsa36ykkdz6b1g"; depends=[]; }; - OmicInt = derive2 { name="OmicInt"; version="1.1.5"; sha256="1jyv5bffckvjkgxbplh4z3f6l34nl07sxm8as35z9g34dfdg64pv"; depends=[cluster dendextend dplyr ggExtra ggplot2 gtools igraph knitr lattice mclust pheatmap plotly RColorBrewer RCurl reshape2 rmarkdown STRINGdb stringr tidyr tidyselect]; }; + OmicInt = derive2 { name="OmicInt"; version="1.1.7"; sha256="1rrh2z8hbfvha8yi7d7m7bpgz514cp9dzv5vs4yn5pagzca6r5np"; depends=[cluster dendextend dplyr ggExtra ggplot2 gtools igraph knitr lattice mclust pheatmap plotly RColorBrewer RCurl reshape2 rmarkdown STRINGdb stringr tidyr tidyselect]; }; OmicKriging = derive2 { name="OmicKriging"; version="1.4.0"; sha256="08frr38yf5d0l3zwkbq9465xrbyzsn8sx9icqc3yvfnxrkhrpzig"; depends=[doParallel foreach irlba ROCR]; }; OmicNavigator = derive2 { name="OmicNavigator"; version="1.4.3"; sha256="0d000yscxqzk80fgavgilvwr6xw1czkdcpz19f5ra4wnxgcpbb3i"; depends=[data_table jsonlite]; }; OmicsPLS = derive2 { name="OmicsPLS"; version="2.0.2"; sha256="08vx4925j5ln366h7nzhf1ra5ciplrqw911258chi9di7gpm8g50"; depends=[dplyr ggplot2 magrittr softImpute tibble]; }; @@ -3327,7 +3334,7 @@ in with self; { PAC = derive2 { name="PAC"; version="1.1.4"; sha256="0h7381mr3jgzl7fi6v7amgmkf5agpkgy068c6ysgh3adlwsh6gs6"; depends=[dplyr ggplot2 ggrepel igraph infotheo parmigene Rcpp Rtsne]; }; PACLasso = derive2 { name="PACLasso"; version="1.0.0"; sha256="1qzzymhfsjy8mk0r0xpd5h4wrx4wk8gq3vi6fnawkq5xkrg26rld"; depends=[lars limSolve MASS penalized quadprog]; }; PACVr = derive2 { name="PACVr"; version="0.9.4"; sha256="0sj5ibqaw452lncxxbm6xkgmmh9ny6hx4b9hppzwglpgk6vvb5f3"; depends=[BiocGenerics Biostrings genbankr GenomicAlignments GenomicRanges IRanges optparse RCircos]; }; - PAFit = derive2 { name="PAFit"; version="1.1.0.4"; sha256="0pwfc9jk7yg18y5mym3ivkasrx7g3263gq8z0q8ljzvvvah84sb5"; depends=[igraph knitr magicaxis mapproj MASS network networkDynamic plyr RColorBrewer Rcpp VGAM]; }; + PAFit = derive2 { name="PAFit"; version="1.2.1"; sha256="0m6rwlkba1f53f4mpdg1wy0bf92wigbgp6a6i9y1b8hy9yv45n19"; depends=[igraph knitr magicaxis mapproj MASS network networkDynamic plyr RColorBrewer Rcpp VGAM]; }; PAGI = derive2 { name="PAGI"; version="1.0"; sha256="01j1dz5ihqslpwp9yidmhw86l112l7rfkswmf03vss872mpvyp3f"; depends=[igraph]; }; PAGWAS = derive2 { name="PAGWAS"; version="2.0"; sha256="0bz47ivd32kx1amgqllqbxyyvj773q7wasgk924hmibabiixa8nx"; depends=[foreach lars mnormt]; }; PAMA = derive2 { name="PAMA"; version="1.2.0"; sha256="12fvkcdkn66gzr193fq9byf64qlq2x9dkjv9hpfw770l4yw496jn"; depends=[ExtMallows mc2d PerMallows rankdist Rcpp]; }; @@ -3362,6 +3369,7 @@ in with self; { PCGSE = derive2 { name="PCGSE"; version="0.4"; sha256="0ky1nzhz6v9n34kas9nw2scc6ip7av19g09zcsxaa9436nhip4f6"; depends=[MASS RMTstat safe]; }; PCICt = derive2 { name="PCICt"; version="0.5-4.1"; sha256="17ipmv6ps7c9dv4k9kxjjynnlgr63baz9z9ndwfg0lckc3vw81ya"; depends=[]; }; PCL = derive2 { name="PCL"; version="1.0"; sha256="0sqlwg0aiw9f1z4x5nixv4x3rq5rnm5i1hijdqygnh9dvckfrgs0"; depends=[]; }; + PCLassoReg = derive2 { name="PCLassoReg"; version="1.0.0"; sha256="1m79aiij4dglfz5qhm5h76hxpgszrpzfw37nvx2y6gcq6dya8krl"; depends=[grpreg survival]; }; PCMBase = derive2 { name="PCMBase"; version="1.2.12"; sha256="0p18g660yax8mmnhq1pd4nax4saf8syqj7c1xpspjbfkr78kh15q"; depends=[ape data_table expm ggplot2 mvtnorm xtable]; }; PCMBaseCpp = derive2 { name="PCMBaseCpp"; version="0.1.9"; sha256="0k40mxs8w1vk7qwpkv8gnq6cq3kpj7wvf0i6f1qn1wmm2vvz1kfy"; depends=[abind data_table PCMBase Rcpp RcppArmadillo]; }; PCMRS = derive2 { name="PCMRS"; version="0.1-2"; sha256="1zr2kzwxgr7rifkkmgz9vhq5i9ky6lqrss742vybwl0nx78mad3p"; depends=[cubature ltm mvtnorm Rcpp RcppArmadillo statmod]; }; @@ -3400,7 +3408,7 @@ in with self; { PK = derive2 { name="PK"; version="1.3-5"; sha256="1wzz2qv6h6nc2hcsg4098951i608xbbhc9f9ngamfigh5sbmzbh6"; depends=[]; }; PKI = derive2 { name="PKI"; version="0.1-8"; sha256="0qk75ml1xpai8hbh9d73rb0w0gwd559dr62ak8kj8q2ppw5vsfa5"; depends=[base64enc]; }; PKLMtest = derive2 { name="PKLMtest"; version="1.0.0"; sha256="0qy0v6jakhczid1bc5d2w52xq0ly770icpn4b8v22wkpn8dvgbd1"; depends=[ranger]; }; - PKNCA = derive2 { name="PKNCA"; version="0.9.4"; sha256="01qipd6liy3fqx96v6hp288drgv6cqmhipbacyh18zi5pifv9hdp"; depends=[digest dplyr nlme rlang tidyr]; }; + PKNCA = derive2 { name="PKNCA"; version="0.9.5"; sha256="0grz5akbpb6i2dg8s9v34qr1zw1r8pczqw2amm6ihi8bxr799223"; depends=[digest dplyr nlme purrr rlang tibble tidyr]; }; PKPDmodels = derive2 { name="PKPDmodels"; version="0.3.2"; sha256="1h893civ77ahbgjnc6kq3l7rszmqmx9dlxwavldigpq3r79vd86k"; depends=[]; }; PKconverter = derive2 { name="PKconverter"; version="1.5"; sha256="1zk2sjrjhq7n2k2p29r2qc6qdghr3riyjvvawz0g74lidg7hm1ly"; depends=[shiny shinydashboard shinythemes]; }; PKreport = derive2 { name="PKreport"; version="1.5"; sha256="16hss9migbxpnw5f9gcw1nlvb81iyji00ylx5wd6kdwhz0ids9wj"; depends=[ggplot2 lattice]; }; @@ -3463,7 +3471,7 @@ in with self; { PReMiuM = derive2 { name="PReMiuM"; version="3.2.7"; sha256="108ijvhs48i0sphqvpkxa3bwcsak7098irz5x82zja42h9bz5hwf"; depends=[BH cluster data_table gamlss_dist ggplot2 plotrix Rcpp RcppEigen rgdal spdep]; }; PResiduals = derive2 { name="PResiduals"; version="1.0-1"; sha256="0mq16cs07hw5c9jj08vpgbb15xvjvz9h0npsbqphiibsb6ca5fwb"; depends=[Formula MASS rms SparseM]; }; PSAgraphics = derive2 { name="PSAgraphics"; version="2.1.1"; sha256="05c0k94dxddyrhsnhnd4jcv6fxbbv9vdkss2hvlf3m3xc6jbwvh9"; depends=[rpart]; }; - PSCBS = derive2 { name="PSCBS"; version="0.65.0"; sha256="16irvlc3ds7p03racjzyljqsc43bbwng3zsb0bmrkibmadfhcr9k"; depends=[aroma_light DNAcopy future listenv matrixStats R_cache R_methodsS3 R_oo R_utils]; }; + PSCBS = derive2 { name="PSCBS"; version="0.66.0"; sha256="14rs2wywipbkia3dbzfhpnkmfgdvm2bf586lggsx63sywlv5d02q"; depends=[aroma_light DNAcopy future listenv matrixStats R_cache R_methodsS3 R_oo R_utils]; }; PSF = derive2 { name="PSF"; version="0.4"; sha256="1hjry8vjqr6zk2i2ppf3fcpsr4v4jm1705qv6i1iz2agl6g2rcnp"; depends=[cluster data_table forecast knitr]; }; PSIMEX = derive2 { name="PSIMEX"; version="1.1"; sha256="0cndzasvg4y49incyd9nfz8y3z88ywbc7xk0zzjir665pv2xn23b"; depends=[knitr MCMCglmm pedigree plotrix]; }; PSLM2015 = derive2 { name="PSLM2015"; version="0.2.0"; sha256="1f8kzlqil2ac8a9fbj9fhdni2narh2yaaz044mlx7gsv2ns3ai19"; depends=[dplyr ggplot2 magrittr]; }; @@ -3473,7 +3481,7 @@ in with self; { PSSMCOOL = derive2 { name="PSSMCOOL"; version="0.2.2"; sha256="04wh8hkpxzf0ldsydq4czg3f5v1zwr1ky86hi42hy9xr94m5mi1r"; depends=[dtt gtools infotheo phonTools]; }; PST = derive2 { name="PST"; version="0.94"; sha256="0f28zrnlficbi9iil6wbh51k9mghpkz63hw05lpmlpx1yl5nd0a6"; depends=[RColorBrewer TraMineR]; }; PSW = derive2 { name="PSW"; version="1.1-3"; sha256="0ahm7rp795d7j88n15b3q0gl573p3g0krc7jd1zv87g4bsdc9b5x"; depends=[gtools Hmisc]; }; - PSweight = derive2 { name="PSweight"; version="1.1.4"; sha256="06na7w1wdh4f1qlhiazsl192ap4rz6anp108s3g7p5prw0lxq1j1"; depends=[gbm ggplot2 MASS nnet numDeriv SuperLearner]; }; + PSweight = derive2 { name="PSweight"; version="1.1.5"; sha256="06vn5xv7s80pb88vhwfgbff6jly9p0fpa81p48vijjff2gg6d6nh"; depends=[gbm ggplot2 MASS nnet numDeriv SuperLearner]; }; PTAk = derive2 { name="PTAk"; version="1.4-0"; sha256="0hm1xij32wgirj7k7qv162zl5r7aj1iyyhpnlbm9wx1mbw72ccbc"; depends=[tensor]; }; PTE = derive2 { name="PTE"; version="1.7"; sha256="1azkrij4kfmvp03lnzm88gwgvz8g54jq94j0qg8ynxvyjzrppc98"; depends=[doParallel foreach survival]; }; PTXQC = derive2 { name="PTXQC"; version="1.0.11"; sha256="15qgmirj9hf4fxxg1arg2sx6fff5rfdszln6rbmidj104biggjpg"; depends=[data_table ggdendro ggplot2 gtable jsonlite kableExtra knitr ontologyIndex plyr R6 R6P RColorBrewer reshape2 rmarkdown seqinr UpSetR xml2 yaml]; }; @@ -3577,7 +3585,6 @@ in with self; { PlanetNICFI = derive2 { name="PlanetNICFI"; version="1.0.3"; sha256="03nm6lrn0gm3fl8v7mz2pglr9gbh7vfh03j1pfqyfk0k58a92a48"; depends=[data_table gdalUtils glue httr raster sf]; }; PlasmaMutationDetector = derive2 { name="PlasmaMutationDetector"; version="1.7.2"; sha256="0qra7q2pzw212qylyrfhv6zjcsldfw84b93cari0qjqnw4gyfph2"; depends=[GenomicRanges ggplot2 robustbase Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; Plasmidprofiler = derive2 { name="Plasmidprofiler"; version="0.1.6"; sha256="10m3knmz0596rm30ncyfprar6l42bjm7r34n4pjz1biqmiz6yz6k"; depends=[ape dplyr gdata ggdendro ggplot2 gridExtra gtable htmlwidgets magrittr plotly plyr RColorBrewer reshape2 stringr]; }; - Plasmode = derive2 { name="Plasmode"; version="0.1.0"; sha256="1qcni9zdckhsnw616jn7rdfd09kbl5wd4hljdja0w73jz1wd1z14"; depends=[arm epiDisplay foreign gbm glm2 lattice latticeExtra lme4 MASS Matrix mgcv nlme nnet RColorBrewer survey survival twang xtable]; }; Platypus = derive2 { name="Platypus"; version="3.2.3"; sha256="1idmarx9r2iyp1wpcw46kfjgjzdws75kdiaz9vg6m618fj4n88cl"; depends=[BiocGenerics Biostrings dplyr ggplot2 jsonlite knitr Matrix plyr reshape2 rmarkdown seqinr Seurat SeuratObject stringr tibble tidyr useful]; }; PlayerRatings = derive2 { name="PlayerRatings"; version="1.1-0"; sha256="04hdjv1gb5b3zym2ryjpqrqhs823nlkmbimfnxw1cfn921ljjgpj"; depends=[]; }; PlotContour = derive2 { name="PlotContour"; version="0.1.0"; sha256="0jjzrxmx1k1s8fyfs9m5a864pmvjh2bdklbhrc3nbhb0c7wd3h9z"; depends=[KernSmooth MASS]; }; @@ -3627,7 +3634,7 @@ in with self; { Power2Stage = derive2 { name="Power2Stage"; version="0.5-3"; sha256="0fs6hkpfivc98dxnlmxqaxsr3bxvfqawjnwyw0qvans8m4wcq1kx"; depends=[cubature mvtnorm PowerTOST]; }; PowerNormal = derive2 { name="PowerNormal"; version="1.2.0"; sha256="1kryqcjvgwk0l4z3gqxdiz47mha3jw5583jlb9z7ml6v7cam06sm"; depends=[]; }; PowerTOST = derive2 { name="PowerTOST"; version="1.5-3"; sha256="0473vm267hsq7s8ggm4m01jig067qcpm30cza0j1kx9cw6ghq68d"; depends=[cubature mvtnorm TeachingDemos]; }; - PowerUpR = derive2 { name="PowerUpR"; version="1.0.4"; sha256="0ng88x1zs4kb8cf2v51kynbp32iz41mh40my5sciyvjbw430bk59"; depends=[]; }; + PowerUpR = derive2 { name="PowerUpR"; version="1.1.0"; sha256="0bnkngdqhzhsbkzp4cxhgm8rzn83q4vm3fj2gkp7z4qznp37lh3j"; depends=[]; }; PracTools = derive2 { name="PracTools"; version="1.2.2"; sha256="08s8pm55814w6mjz3q4n1bcxccmjypb5qiws5g8pcafl6dj7z0wh"; depends=[]; }; PreKnitPostHTMLRender = derive2 { name="PreKnitPostHTMLRender"; version="0.1.0"; sha256="1749cd734f4bf0n4068s2m617k6as8h9bwp44mm3la2xy3vjf5g1"; depends=[knitr rmarkdown XML]; }; PreProcess = derive2 { name="PreProcess"; version="3.1.7"; sha256="1fxzkmrj76mc94xdj7a0nq450021i1jxkigmh5jhrmamkp5581jf"; depends=[oompaBase]; }; @@ -3694,6 +3701,7 @@ in with self; { QBAsyDist = derive2 { name="QBAsyDist"; version="0.1.2"; sha256="1yql29npaq9yz02bv3hqf5m2mhscjms7qqf4vlaxm8s665rxcxad"; depends=[ald Deriv GoFKernel locpol nloptr quantreg scdensity zipfR]; }; QBMS = derive2 { name="QBMS"; version="0.6"; sha256="083asm4qck29n7mm0b39h1gv7mbsa62w7xn16vy7cmyim9si5h3z"; depends=[httr jsonlite]; }; QCA = derive2 { name="QCA"; version="3.13"; sha256="1v85bcir1jpkm61zpv9zyf79qv3nb4z0z5lh1r10b9idffddcjws"; depends=[admisc shiny venn]; }; + QCAcluster = derive2 { name="QCAcluster"; version="0.1.0"; sha256="094p11c9arry793zibr8x3xhpbrym9bfky95nds53g3yliprdd63"; depends=[data_table magrittr plyr purrr QCA rlist stringi testit UpSetR]; }; QCAfalsePositive = derive2 { name="QCAfalsePositive"; version="1.1.1"; sha256="03qzb6vdnbri52gfx3laz14988p2swdv9m8i5z7gpsv3f3bjrxbp"; depends=[]; }; QCApro = derive2 { name="QCApro"; version="1.1-2"; sha256="1glfb1x1h05cs07nq5glqvlil58wp3c0kaxi1l7k94y797i8r7hq"; depends=[lpSolve]; }; QCAtools = derive2 { name="QCAtools"; version="0.2.3"; sha256="1q49l2mf02hqvz2ahqjdx7i3yxniy7dn2s74xjl9l6zdq8bypfw2"; depends=[directlabels ggplot2 QCA stringr]; }; @@ -3703,7 +3711,7 @@ in with self; { QCSimulator = derive2 { name="QCSimulator"; version="0.0.1"; sha256="1ff7xagnzibhrwrmkqyky4ik3kx7rrlajrs1ypm210sl1d73jwvs"; depends=[ggplot2]; }; QDComparison = derive2 { name="QDComparison"; version="3.0"; sha256="0y4494r3ixkyh58xr9md7c6xgcj1hgbjzfybvqqdbawjxvy5p38i"; depends=[]; }; QDiabetes = derive2 { name="QDiabetes"; version="1.0-2"; sha256="0r1rbg3azh7y4f5r9w0zj6qa658f63gyq6b007q514iivkzxib1c"; depends=[]; }; - QF = derive2 { name="QF"; version="0.0.4"; sha256="1f5506l3jjq657lfh3r1dn9cfxsdsbph11i1f6wnqpfdcjhk7dj1"; depends=[Rcpp RcppGSL]; }; + QF = derive2 { name="QF"; version="0.0.6"; sha256="0kvhvpj28293i65wh00jyz7fsbqk5q8x5i05bsk29n2rfrf627bl"; depends=[Rcpp RcppGSL]; }; QFASA = derive2 { name="QFASA"; version="1.1.1"; sha256="16y8clv9h5crr9x79y0zzc2qmazi1d6qdslk1ranp2llwa42d9sp"; depends=[boot bootstrap Compositional compositions dplyr futile_logger gamlss gamlss_dist MASS Rcpp RcppEigen Rsolnp TMB vegan]; }; QFRM = derive2 { name="QFRM"; version="1.0.1"; sha256="1k79sq9il4326q7ivwdwlzw7drjv4pwqra3fr8kyyqcpmxh9296h"; depends=[]; }; QGameTheory = derive2 { name="QGameTheory"; version="0.1.2"; sha256="0h3qkb0zg6km3s89bjnv9503hgcng4wfywfy1x5dsbj5azs9hs5w"; depends=[dplyr R_utils RColorBrewer]; }; @@ -3783,7 +3791,7 @@ in with self; { RADstackshelpR = derive2 { name="RADstackshelpR"; version="0.1.0"; sha256="0j2vazbji8xqb8xkd9jrpi10iqj30rvkdjfs4snavl9nsbra99yf"; depends=[ggplot2 ggridges gridExtra vcfR]; }; RAEN = derive2 { name="RAEN"; version="0.2"; sha256="098d990qa987hx2llqwdw2bmi5nmrlda23j1rgmw5nirllk28d30"; depends=[boot doParallel fastcmprsk foreach glmnet lars]; }; RAINBOWR = derive2 { name="RAINBOWR"; version="0.1.26"; sha256="1x2gdx9fk28r7q6i5b8x0kald2qfiljqm62fpwhg57vz0q53pl51"; depends=[ape cluster expm ggplot2 ggtree haplotypes here htmlwidgets MASS Matrix optimx pbmcapply pegas phylobase Rcpp RcppEigen Rfast rrBLUP scatterpie stringr]; }; - RALSA = derive2 { name="RALSA"; version="1.0.1"; sha256="0gvckia9xl6yr4w5mdmz500xcbghjak3krf6as2mmr814ibmw3k0"; depends=[data_table DT foreign gdata Hmisc openxlsx readr shiny shinydashboard shinyFiles shinyjs stringi stringr]; }; + RALSA = derive2 { name="RALSA"; version="1.0.2"; sha256="066m08v3kd5y3cw3s9d8ijchwfd4fw8ps4mgh4q3zy2y7g0wda97"; depends=[data_table DT foreign Hmisc openxlsx readr shiny shinydashboard shinyFiles shinyjs stringi stringr]; }; RAM = derive2 { name="RAM"; version="1.2.1.7"; sha256="0aalswivpjs1glwf4yh3b79lch3n32fyj5xda55h3v7gzs7p0d7f"; depends=[ade4 ape data_table FD ggmap ggplot2 gplots gridExtra labdsv lattice MASS permute phangorn phytools plyr RColorBrewer reshape reshape2 RgoogleMaps scales vegan VennDiagram]; }; RAMClustR = derive2 { name="RAMClustR"; version="1.2.2"; sha256="0v75dxwn1bybjw3zybvz60j01nffl0nzybw5k0a7kqhbcb7cdpqw"; depends=[BiocManager dynamicTreeCut e1071 fastcluster ff ggplot2 gplots httr InterpretMSSpectrum jsonlite MSnbase pcaMethods preprocessCore RCurl stringi stringr webchem xml2]; }; RAMP = derive2 { name="RAMP"; version="2.0.2"; sha256="0836fiycrsxiwdw7srz1rvsf639iqh2rk89gavx4kvn0i0sc8d2x"; depends=[]; }; @@ -3800,7 +3808,7 @@ in with self; { RApiDatetime = derive2 { name="RApiDatetime"; version="0.0.6"; sha256="15j6vb6rm4ykwjachqyyfvjshiilyjqnpj8x6qc93savk04rf279"; depends=[]; }; RApiSerialize = derive2 { name="RApiSerialize"; version="0.1.0"; sha256="0gm2j8kh40imhncwwx1sx9kmraaxcxycvgwls53lcyy2ap344k9j"; depends=[]; }; RAppArmor = derive2 { name="RAppArmor"; version="3.2.2"; sha256="0l0f4k666nh00db94sjxz60anr4l9vm0259pcc2a4whk2pmjcq5n"; depends=[unix]; }; - RAthena = derive2 { name="RAthena"; version="2.2.0"; sha256="068gljn17wwwzkd52yjg4kszg10innk401lm1sg6r4x3l6yppnn7"; depends=[data_table DBI reticulate uuid]; }; + RAthena = derive2 { name="RAthena"; version="2.3.0"; sha256="1yfh40g9i6974a4zma94k8d3q4gbjfxr6h0agxd4zk5bs5ld50ja"; depends=[data_table DBI reticulate uuid]; }; RBF = derive2 { name="RBF"; version="2.1.0"; sha256="0062ckvrjfkkl5lfrshrr2cynrxsrp4zpdpl8nij06hm00i3gfs5"; depends=[]; }; RBMRB = derive2 { name="RBMRB"; version="2.1.7"; sha256="09x7zaigflc0d3pbdrvfv1kdklrlzgd4v2ma3dcr96l36n1iqqns"; depends=[data_table ggplot2 httr plotly rjson]; }; RBNZ = derive2 { name="RBNZ"; version="1.1.0"; sha256="11fdnc2pmw5nq3lswid078l307ln6853a3b9d383msvrkz6yms26"; depends=[httr lubridate readxl rvest xml2]; }; @@ -3881,6 +3889,7 @@ in with self; { RGBM = derive2 { name="RGBM"; version="1.0-8"; sha256="0xd64g07y808nzs4zvbx6bxdpbj2ndqg6yzc3p0l43pxm4hyxva0"; depends=[doParallel foreach plyr]; }; RGCCA = derive2 { name="RGCCA"; version="2.1.2"; sha256="0zcxakqnmih0243y5b6r9nmcfanzxd6q344pd5bca5pnm3y43wr0"; depends=[Deriv MASS]; }; RGCxGC = derive2 { name="RGCxGC"; version="1.1-2"; sha256="03ihqra8q50a98adgxrx8l7js963f41kg2fy3lxzh9zma4gzj62q"; depends=[colorRamps mixOmics ptw Rdpack RNetCDF]; }; + RGE = derive2 { name="RGE"; version="1.0"; sha256="1ild1if10xicfapfcmydz1cgvn5fyydrik8qclb90i95bl9bs4ia"; depends=[coda Matrix MatrixModels]; }; RGENERATE = derive2 { name="RGENERATE"; version="1.3.5"; sha256="12dq04xpl06zhkzwqx3zy0bkpvb5phbdj2inxsyczf6d4dk209mb"; depends=[RMAWGEN]; }; RGENERATEPREC = derive2 { name="RGENERATEPREC"; version="1.2.8"; sha256="1y70fs8d7vldwijgzny3awcvx97sghclyrb40dzvffli2q15ym9f"; depends=[blockmatrix copula Matrix RGENERATE RMAWGEN stringr]; }; RGF = derive2 { name="RGF"; version="1.0.8"; sha256="0nd38cn3248kgzknr0ba3wg5y1g15vh74y9y94i2bqr1vchf6xsm"; depends=[Matrix R6 reticulate]; }; @@ -3975,7 +3984,6 @@ in with self; { RNGforGPD = derive2 { name="RNGforGPD"; version="1.1.0"; sha256="0zriv0pd86ciwrms95bbb9wh40xvxv20vla2hxbmaynfy1s1vd4j"; depends=[corpcor Matrix mvtnorm]; }; RNHANES = derive2 { name="RNHANES"; version="1.1.0"; sha256="045ykpgxvc22blbp47ysbk6a6x4akjd39pjr114cr23s7f48g6h4"; depends=[dplyr foreign rvest survey xml2]; }; RNOmni = derive2 { name="RNOmni"; version="1.0.0"; sha256="1zn0yswycvzc3bm5rd7n84b2jbb5rdl66m4x5miz9pv7h6wsckkv"; depends=[plyr Rcpp RcppArmadillo]; }; - RNRCS = derive2 { name="RNRCS"; version="0.2.5"; sha256="19q78l8mh4701vqvr36vqc87n39s5ivzhiy5lvnxbd4dgibk1jr2"; depends=[ggplot2 magrittr rvest xml2]; }; RNaviCell = derive2 { name="RNaviCell"; version="0.2"; sha256="15k8hkagn5520fy7x672fy329s2v7l0x44s44f6v7ql9mmg4b635"; depends=[RCurl RJSONIO]; }; RNeXML = derive2 { name="RNeXML"; version="2.4.5"; sha256="1wsl4xq9w5bp3wk69dw57bg0qcw1vs6ajwya4p0w1r00ck5pwrib"; depends=[ape dplyr httr lazyeval plyr reshape2 stringi stringr tidyr uuid XML xml2]; }; RNentropy = derive2 { name="RNentropy"; version="1.2.2"; sha256="0chvmrvpyyghilwb63y6pd1zp94i5qhpv5w19x9nw0ypk86pp2dj"; depends=[]; }; @@ -4043,7 +4051,7 @@ in with self; { RPPairwiseDesign = derive2 { name="RPPairwiseDesign"; version="1.0"; sha256="0k2vh698rhs5a0b5vhyvrnnwqnagdzs591zx6hn9vbmm8rm4y1dm"; depends=[]; }; RPPanalyzer = derive2 { name="RPPanalyzer"; version="1.4.7"; sha256="16xppv7pzqk6kriqd5ym313z1r61l13dzpxp2q2zi0ai23hjgg92"; depends=[Biobase gam ggplot2 gplots Hmisc lattice limma quantreg]; }; RPS = derive2 { name="RPS"; version="1.0.1"; sha256="16n6wknw2m56kwi6rswgxjwjqblhaz5gyw94f96a7l6navqnvlp4"; depends=[ape geomorph Gmedian igraph MASS matlab]; }; - RPostgreSQL = derive2 { name="RPostgreSQL"; version="0.7-2"; sha256="1wrd9gf5g97w268fi4l4gif2ccfgzmra6nfa92y79rycv29vyjs4"; depends=[DBI]; }; + RPostgreSQL = derive2 { name="RPostgreSQL"; version="0.7-3"; sha256="1fbixmnjp1kh6yiv8zhg8zi5ryvdf5j2jxv4agq5gcxf541s3g5x"; depends=[DBI]; }; RPostgres = derive2 { name="RPostgres"; version="1.4.1"; sha256="1nh31z89f3ppsc26fsssjbp6x9zwakimvnmvbhrnd53726pc7hkz"; depends=[bit64 blob DBI hms lubridate plogr Rcpp withr]; }; RPresto = derive2 { name="RPresto"; version="1.3.7"; sha256="1iyprqlr0c73j63p0bc98bfq6dcmm1kzcj86q4y34vvwjqcbb99c"; depends=[DBI httr jsonlite openssl purrr Rcpp stringi]; }; RProbSup = derive2 { name="RProbSup"; version="3.0"; sha256="1z53zgx26fwfhb1vxad0l51v34y2lsplhwbjaf4r44rngdaw9h5n"; depends=[]; }; @@ -4060,7 +4068,7 @@ in with self; { RRI = derive2 { name="RRI"; version="1.1"; sha256="0msdc5j5vx4snl8r3q5nn0mw2i80jds5pjykhmigcrx6jzg6h6i7"; depends=[Rcpp RcppArmadillo]; }; RRMLRfMC = derive2 { name="RRMLRfMC"; version="0.4.0"; sha256="0y8gs9rirrcjb89jqxr7rrp89pjal7lzcscnh4kmabhih3f2d729"; depends=[nnet]; }; RRNA = derive2 { name="RRNA"; version="1.0"; sha256="14rcqh95ygybci8hb8ays8ikb22g3850s9f3sgx3r4f0ky52dcba"; depends=[]; }; - RRPP = derive2 { name="RRPP"; version="1.1.0"; sha256="0wfh4vq95cksks64dsmq5vckqcrpj6nf969zlf256kq7nv8spglp"; depends=[ape ggplot2 Matrix]; }; + RRPP = derive2 { name="RRPP"; version="1.1.1"; sha256="1y3j577dxsgalc56p1hhaslc5p7jxxm0pc0gv1yz79p778xdnfhs"; depends=[ape ggplot2 Matrix]; }; RRRR = derive2 { name="RRRR"; version="1.1.0"; sha256="0h5r668qn8hp4j4zhxhn4b3lqm138n6kc1c7vf95hmbh4ah6wzf7"; depends=[expm ggplot2 magrittr matrixcalc mvtnorm]; }; RRTCS = derive2 { name="RRTCS"; version="0.0.4"; sha256="16v6f5yvfq9l1b4h5mr4y0i2k404vdv354yz4k780w79qib7g39p"; depends=[sampling samplingVarEst]; }; RRate = derive2 { name="RRate"; version="1.0"; sha256="1q3f2gphdf50aijnk5xqfpxcqfd4jq7byb1gpb0vcnaxgi3a9lwm"; depends=[]; }; @@ -4072,7 +4080,7 @@ in with self; { RSAGA = derive2 { name="RSAGA"; version="1.3.0"; sha256="1y1zhy2bxkfsv8vmnxjdg9i5rqkvs32kw8h5z1mclv953srgkpn9"; depends=[gstat magrittr plyr rgdal shapefiles stringr]; }; RSAlgaeR = derive2 { name="RSAlgaeR"; version="1.0.0"; sha256="1hp0v2vkj9ixiv541d53kyl0ph3jsdc5w98r81gv5ck5ixrp6bxp"; depends=[cvTools ggplot2 hydroGOF lubridate mblm plyr]; }; RSBJson = derive2 { name="RSBJson"; version="1.1.2"; sha256="1bzy0pgj6kg447xnnjj643hk8gyzzaaliiw0z98r19959bqbvgq3"; depends=[jsonlite]; }; - RSC = derive2 { name="RSC"; version="2.0"; sha256="0ypnns7y7kid7c7ff63vmmy0hm21h8np98vzkgkrpcx73jckll25"; depends=[doParallel foreach Matrix]; }; + RSC = derive2 { name="RSC"; version="2.0.1"; sha256="0qb4sm6mrrphb5986jvgzw7lr9fchhm4r09a3dw9nlxzql5gn4zg"; depends=[doParallel foreach Matrix]; }; RSCAT = derive2 { name="RSCAT"; version="1.1.3"; sha256="08p4gywh1g13mwcmvp046ybz410jyrzi505rdqr8yirjpk59bw1p"; depends=[ggplot2 gridExtra Metrics rJava shiny shinycssloaders shinyjs]; }; RSDA = derive2 { name="RSDA"; version="3.0.9"; sha256="12ychaaa1n5gam93f5kpxsvsfc9x07znzzz9nrx8bsvgmq4znqf9"; depends=[dplyr e1071 FactoMineR forcats gbm ggplot2 ggpolypath glmnet kknn labelled magrittr neuralnet nloptr princurve purrr randomcoloR randomForest reshape RJSONIO rlang rpart scales sqldf stringr tibble tidyselect vctrs XML]; }; RSE = derive2 { name="RSE"; version="1.3"; sha256="1dvmj1zwkbp1dj9r8kcvbd8rpknfwfdqaqc5gfl82bh823w72099"; depends=[]; }; @@ -4175,7 +4183,7 @@ in with self; { RandVar = derive2 { name="RandVar"; version="1.2.1"; sha256="17c6bx644n604zpggmwx1z3krgd9v7c88il45cf5yhp7zf7cc718"; depends=[distr distrEx startupmsg]; }; RandomCoefficients = derive2 { name="RandomCoefficients"; version="0.0.2"; sha256="04l0aczrlbkjk0687w2gxs85ia71yy69mgankwkl37ksznh6y81m"; depends=[fourierin ks orthopolynom polynom RCEIM rdetools robustbase sfsmisc snowfall statmod tmvtnorm VGAM]; }; RandomFields = derive2 { name="RandomFields"; version="3.3.10"; sha256="0jcjb5j70s3xk8nb8hc1jkzg24d41y7h5yhch79g31ch4rvfcbgp"; depends=[RandomFieldsUtils sp]; }; - RandomFieldsUtils = derive2 { name="RandomFieldsUtils"; version="0.5.4"; sha256="1ql4dxly5qbg87z4pcqffslmamcv869knnmjf1hviiy5dhvzy45f"; depends=[]; }; + RandomFieldsUtils = derive2 { name="RandomFieldsUtils"; version="0.5.6"; sha256="17hwdiq4xx0yn6kali8ydh1i4nnszvyhjp4ksryr0856dihl83pj"; depends=[]; }; RandomForestsGLS = derive2 { name="RandomForestsGLS"; version="0.1.3"; sha256="1xqzpfgs6hdkaf99xgrxc4m5k73vpvkhpgb4bw01rhhay08zzv4g"; depends=[BRISC matrixStats pbapply randomForest]; }; Randomuseragent = derive2 { name="Randomuseragent"; version="0.0.1"; sha256="1ym272z5a2wnprz59db8knszzqglmrdmk77r7cfyzy5jwcqzy4jn"; depends=[]; }; RanglaPunjab = derive2 { name="RanglaPunjab"; version="2.3.4"; sha256="01j3gww9kil02d44jwlkz6j7lwn2him830bnshkly0s7mgh22pgr"; depends=[jpeg shiny tidyverse]; }; @@ -4243,7 +4251,7 @@ in with self; { RcmdrPlugin_SLC = derive2 { name="RcmdrPlugin.SLC"; version="0.2"; sha256="1nwpzmgfla1y05dxf81w0wmvvmvcq5jn5k8phlq30920ia7ybs8g"; depends=[Rcmdr SLC]; }; RcmdrPlugin_TeachStat = derive2 { name="RcmdrPlugin.TeachStat"; version="1.1.0"; sha256="1djyiqj7k96csrbzql5gmi5dca3c8rf3ymskfskrx62zpxmn4xic"; depends=[distr distrEx Hmisc IndexNumR lme4 randtests Rcmdr tcltk2 tseries]; }; RcmdrPlugin_TeachingDemos = derive2 { name="RcmdrPlugin.TeachingDemos"; version="1.2-0"; sha256="14zsqjni2w2smq99cv1pjdw90zw83g4nn7h7cn07fms9j0g12yd6"; depends=[Rcmdr TeachingDemos]; }; - RcmdrPlugin_UCA = derive2 { name="RcmdrPlugin.UCA"; version="4.4-3"; sha256="0rw8nxh714cb3p448hrxad61l2zrmkvhxba912c5m9qjrx5pnhq5"; depends=[IQCC qcc qicharts2 randtests Rcmdr rmarkdown TeachingDemos tseries]; }; + RcmdrPlugin_UCA = derive2 { name="RcmdrPlugin.UCA"; version="4.5-1"; sha256="0727z23byqsi5bdfp2wya4ymlbh39q8hsn4ij162lg0wfpm28wzd"; depends=[IQCC qcc qicharts2 randtests Rcmdr rmarkdown TeachingDemos tseries]; }; RcmdrPlugin_WorldFlora = derive2 { name="RcmdrPlugin.WorldFlora"; version="1.1"; sha256="1cv580ar1kp0174h2mcg05nrr1d8sdlmimhyzk908gjhghmi6ahj"; depends=[Rcmdr WorldFlora]; }; RcmdrPlugin_aRnova = derive2 { name="RcmdrPlugin.aRnova"; version="0.0.5"; sha256="0ys3565pcbr554yb1gi2h149vhvwc0gdfmh7mz8zzd4367hqn553"; depends=[Rcmdr]; }; RcmdrPlugin_coin = derive2 { name="RcmdrPlugin.coin"; version="1.0-22"; sha256="0qmdjnjmgq52wgl4llg69q9x7hvwd73mz3swv0sv88v8zqg7xj93"; depends=[coin multcomp Rcmdr survival]; }; @@ -4282,7 +4290,7 @@ in with self; { RcppDynProg = derive2 { name="RcppDynProg"; version="0.2.0"; sha256="10nc0sx3n83kg8rddbajifr9q8iyjmm59z5xcpqfmmfi345i26al"; depends=[Rcpp RcppArmadillo wrapr]; }; RcppEigen = derive2 { name="RcppEigen"; version="0.3.3.9.1"; sha256="0qp9gypar280lm84pc8w0fxw4jgwqygwi3qnl5sl52kpkcj8c14a"; depends=[Matrix Rcpp]; }; RcppEigenAD = derive2 { name="RcppEigenAD"; version="1.0.0"; sha256="18zm9hsfqwiicxsdm87ix3qc261ljxxn2s736p6aayx82b6vwkz6"; depends=[BH functional memoise Rcpp RcppEigen Rdpack readr]; }; - RcppEnsmallen = derive2 { name="RcppEnsmallen"; version="0.2.17.0.1"; sha256="1zxvzka4jbn64cgafd77s6wx6zhv3ngmzqws2d74hmf7akcyys19"; depends=[Rcpp RcppArmadillo]; }; + RcppEnsmallen = derive2 { name="RcppEnsmallen"; version="0.2.18.0.1"; sha256="0n59wh9sz723i9c3p7j6ca0ay20fxra1215xczzwgk492iqravyi"; depends=[Rcpp RcppArmadillo]; }; RcppExamples = derive2 { name="RcppExamples"; version="0.1.9"; sha256="0568zipgjxgmx086mlfpp5n7v8kf50gwrylvhl1bgvzb2vvr9dhj"; depends=[Rcpp]; }; RcppFaddeeva = derive2 { name="RcppFaddeeva"; version="0.1.0"; sha256="1rah18sdfmbcxy83i7vc9scrwyr34kn9xljkv9pa31js68gn2jrl"; depends=[knitr Rcpp]; }; RcppFarmHash = derive2 { name="RcppFarmHash"; version="0.0.2"; sha256="0nkismq7hmp1ahwv4z438zrcj7mqsfmas2yd6av6k2cmkgklqkbk"; depends=[Rcpp]; }; @@ -4301,7 +4309,7 @@ in with self; { RcppNumerical = derive2 { name="RcppNumerical"; version="0.4-0"; sha256="1a92fql6mijhnr1kxkcxwivf95pk9lhgmhzkshs51h0ybfv5krik"; depends=[Rcpp RcppEigen]; }; RcppParallel = derive2 { name="RcppParallel"; version="5.1.4"; sha256="10pa9vaz7p4m6hjca2cpy6vj7rvgly4zv0q1g2xfsmcchyk4bdbn"; depends=[]; }; RcppProgress = derive2 { name="RcppProgress"; version="0.4.2"; sha256="0j2b37gwjpgmrnr00srdzm751hzlpsjb54ph63xxmcdfnwhlnqmi"; depends=[]; }; - RcppQuantuccia = derive2 { name="RcppQuantuccia"; version="0.0.4"; sha256="13mbzjg8g59gydhgli632gnp9kkqi0wss6vgj3dqkk557bi0xj6c"; depends=[BH Rcpp]; }; + RcppQuantuccia = derive2 { name="RcppQuantuccia"; version="0.1.0"; sha256="0nclclhrhvdma8s07jly0xrmaf8iqigln137wmjnsmj6hg7r8ph9"; depends=[BH Rcpp]; }; RcppRedis = derive2 { name="RcppRedis"; version="0.1.11"; sha256="0aill5ng6ifcafsij1nsqcchca8sxdd87645c45sx7dznpsgrhvj"; depends=[BH RApiSerialize Rcpp]; }; RcppRoll = derive2 { name="RcppRoll"; version="0.3.0"; sha256="0srzfhzkk42kzrdjnhbb37946jp1p688rgysy6k3i2is8jb21zyb"; depends=[Rcpp]; }; RcppSMC = derive2 { name="RcppSMC"; version="0.2.5"; sha256="1jhxyvbgny52kvck276i07g1zz3lzzjw1w2q4xlb50xqwlbks4r0"; depends=[Rcpp RcppArmadillo]; }; @@ -4350,7 +4358,7 @@ in with self; { RecordLinkage = derive2 { name="RecordLinkage"; version="0.4-12.1"; sha256="0l837hmcn1gwisn1y9q745grg1fyrdbx44jhj81475h2zdn8dbs4"; depends=[ada data_table DBI e1071 evd ff ipred nnet rpart RSQLite xtable]; }; RecordTest = derive2 { name="RecordTest"; version="2.1.0"; sha256="0a5hbhqx97kllwf5k6lrhcqixhqqj8ndklcvpmsp9jdf011b1100"; depends=[ggplot2]; }; Records = derive2 { name="Records"; version="1.0"; sha256="08y1g2m6bdrvv4rpkhd5v2lh7vprxy9bcx9ahp1f7p062bn2lwji"; depends=[]; }; - RedditExtractoR = derive2 { name="RedditExtractoR"; version="3.0.3"; sha256="0p6d40ba5a3ndh12lrxj2i23xlspw6nygmsh3zsnjmjw4bg3dir0"; depends=[RJSONIO rlang]; }; + RedditExtractoR = derive2 { name="RedditExtractoR"; version="3.0.5"; sha256="09f815av0sn9cz5n3l02k1rrl91d4f67xkwqpdpadw7hnv516pwf"; depends=[RJSONIO rlang]; }; RedisBaseContainer = derive2 { name="RedisBaseContainer"; version="1.0.1"; sha256="0pnjj3rbp2as7h92907g338bd173ygl1zfnlfw6c9wpzfvw909rr"; depends=[DockerParallel]; }; Rediscover = derive2 { name="Rediscover"; version="0.3.0"; sha256="0396shg9gf0r7q5jlrab5mr003fz7kj8xdq5chnzmild6kwyq3sk"; depends=[data_table maftools Matrix matrixStats PoissonBinomial RColorBrewer ShiftConvolvePoibin speedglm]; }; Redmonder = derive2 { name="Redmonder"; version="0.2.0"; sha256="02qrz1b0g7hdacj2s2bks5gfwnypkbiwlmn0bv7im1zz1swg9cp8"; depends=[]; }; @@ -4372,6 +4380,7 @@ in with self; { ReorderCluster = derive2 { name="ReorderCluster"; version="1.0"; sha256="0ss750frzvj0bm1w7zblmcsjpszhnbffwlkaw31sm003lbx9hy58"; depends=[gplots Rcpp]; }; RepaymentPlan = derive2 { name="RepaymentPlan"; version="0.1.0"; sha256="1fd4n24bd5s2kqmls7mmsidblaf8nzm97kz52mfsb6i6fci0pgah"; depends=[]; }; RepeatedHighDim = derive2 { name="RepeatedHighDim"; version="2.0.0"; sha256="1n9w4jb25pm0mmsahlfhkp9jmhgp5b21l1g85gm2wbxqkjsg7g0g"; depends=[MASS nlme]; }; + RepertoiR = derive2 { name="RepertoiR"; version="0.0.1"; sha256="1m7n7p40n3djy91z8z3gqqwscqgij63rjrj2bqbl3baqz16nf4hc"; depends=[circlize igraph reshape2 stringdist stringi stringr]; }; Replicate = derive2 { name="Replicate"; version="1.2.0"; sha256="0kqy248c8n7qr5hwzvqm7flnjlwd60c577r1d4vzgfxn7azd5v3v"; depends=[ggplot2 metafor]; }; Replication = derive2 { name="Replication"; version="0.1.2"; sha256="1za7zcdaf839xf8hxy4rcrr1p80n6a3ywb2bsl3wikwa0pxdvvbh"; depends=[blavaan lavaan MASS mice quadprog rjags runjags]; }; ReplicationSuccess = derive2 { name="ReplicationSuccess"; version="1.1.0"; sha256="0l74mihpmf2yxsacyldfh93hiccs2mmjn3hls6dmigkm6k6n5wkk"; depends=[]; }; @@ -4438,8 +4447,8 @@ in with self; { Rmixmod = derive2 { name="Rmixmod"; version="2.1.5"; sha256="0cl0bl7554abjwz2as8gqvrzqswlw5727dac5302p7ksy3id9a1j"; depends=[Rcpp RcppEigen]; }; RmixmodCombi = derive2 { name="RmixmodCombi"; version="1.0"; sha256="0cwcyclq143938wby0aj265xyib6gbca1br3x09ijliaj3pjgdqi"; depends=[Rcpp Rmixmod]; }; Rmosek = derive2 { name="Rmosek"; version="1.3.5"; sha256="18q39n2p3gms9zqrl8g15rjjk4v64365v0rm8r7zvvivh1hy5xa0"; depends=[]; }; - Rmpfr = derive2 { name="Rmpfr"; version="0.8-5"; sha256="1a37zaahcyccb5kgad98z4dh9n75vffmiziv4al8axvihxqs5hjn"; depends=[gmp]; }; - Rmpi = derive2 { name="Rmpi"; version="0.6-9.1"; sha256="1j8akqjan59yzwx2s1zxc214qyd323fd2i2dhgq0n11mb6ajmq4r"; depends=[]; }; + Rmpfr = derive2 { name="Rmpfr"; version="0.8-7"; sha256="1ljpbxvm4agbxnab5dfffbpw5k964hy3gw57dzydq1gpbxwdphlk"; depends=[gmp]; }; + Rmpi = derive2 { name="Rmpi"; version="0.6-9.2"; sha256="06mxqgrimhfsag5giv810c7ycdbaycqs4qcj41pnfbj0jypw32im"; depends=[]; }; Rmst = derive2 { name="Rmst"; version="0.0.3"; sha256="1fykpii17k460qlsjhhh5vag02lhkyk5l3zjmg8hifqp0cjhz2fl"; depends=[ggplot2 Rata reshape2 Rirt]; }; RnavGraphImageData = derive2 { name="RnavGraphImageData"; version="0.0.4"; sha256="1k1gnkghap878fck0bbz9mm0fr4cli6lh1d11r0cf47fvl6cc4gr"; depends=[]; }; Rnightly = derive2 { name="Rnightly"; version="0.1.0"; sha256="08sb4ic7my8b6xcjn9vim8wp4z3kvk0gyp604dg1az7czc7ics5r"; depends=[glue htmltools]; }; @@ -4469,7 +4478,7 @@ in with self; { RobustLinearReg = derive2 { name="RobustLinearReg"; version="1.2.0"; sha256="06137f516gyj64qdmwby7m1xnvj4hxzpqj454jn0xcinvl89380w"; depends=[]; }; RobustRankAggreg = derive2 { name="RobustRankAggreg"; version="1.1"; sha256="1pslqyr1lji1zvcrwyax4zg2s81p1jnhfldz8mdfhsp5y7v8iar3"; depends=[]; }; RockFab = derive2 { name="RockFab"; version="1.2"; sha256="1b5mhfll5vmqwl4pblmclyx9604vn07jyza02rm0jcsx915ms8sc"; depends=[EBImage rgl]; }; - Rodam = derive2 { name="Rodam"; version="0.1.8"; sha256="13vp6mmqzlfksva8zbjz16chnx1wa7g5nscqhk1q00n87s85zp6x"; depends=[RCurl]; }; + Rodam = derive2 { name="Rodam"; version="0.1.10"; sha256="07ydws3b4z88v9iah3wyj3y5ar89f72g54qlz0h2p56785jz0jci"; depends=[httr]; }; Rogue = derive2 { name="Rogue"; version="2.0.0"; sha256="1dxyxgwy0hylbbgi9vc6g8cll2qxim2wl9zva643g4aq4da5wwsg"; depends=[ape cli fastmatch matrixStats Rdpack Rfast TreeDist TreeTools]; }; RolWinMulCor = derive2 { name="RolWinMulCor"; version="1.2.0"; sha256="0vfsgp0qvv6pnpai8nyy0xzzlzyjwx98xrhlwlks9dbm84wg8vqr"; depends=[colorspace gtools pracma scales zoo]; }; RonFHIR = derive2 { name="RonFHIR"; version="0.4.0"; sha256="1ajpgpp300m0zzqzzwsn8sfy8x751hrr8py9n9xvzjmkgyrh4hhw"; depends=[httr jsonlite R6 stringr]; }; @@ -4523,7 +4532,7 @@ in with self; { RtutoR = derive2 { name="RtutoR"; version="1.2"; sha256="19wmi30b5i6zj673d76gxl6j0k3ppfyl5fqrcs0dwmmadrrvbajq"; depends=[colourpicker devtools dplyr DT FSelector ggplot2 ggthemes officer plotly rlang rmarkdown shiny shinyBS shinydashboard shinyjs tidyr]; }; Rtwalk = derive2 { name="Rtwalk"; version="1.8.0"; sha256="0zxf66lsfq8by40flv34xzd5yy0wa1ah9li1d0h7f0yh9nbwhxl5"; depends=[]; }; Runiversal = derive2 { name="Runiversal"; version="1.0.2"; sha256="0667mspsjydmxi848c6wsf14gz72bmdj9b3lilma92b7fhqnv7ai"; depends=[]; }; - Runuran = derive2 { name="Runuran"; version="0.34"; sha256="0r6nljacqvn1hlya0vrrfm7hbxydk0iw71dgrzs5djl4dmiw3kal"; depends=[]; }; + Runuran = derive2 { name="Runuran"; version="0.35"; sha256="15yndyw3rlxkb1mqq8db5csc6xl1zjyhrgzgx4b7iln59l3dgwfr"; depends=[]; }; Rvcg = derive2 { name="Rvcg"; version="0.20.2"; sha256="04kwn7hp1gyw2daxg2vwfalhggj7x3vl03qd9m0wr5nsccjd29cy"; depends=[Rcpp RcppArmadillo RcppEigen]; }; Rvmmin = derive2 { name="Rvmmin"; version="2018-4.17.1"; sha256="0kl1h4mlvb1bngb40r3dhrjkpnh3lsqddis65hbjzm2pzz20l02m"; depends=[optextras]; }; Rvoterdistance = derive2 { name="Rvoterdistance"; version="1.1"; sha256="16il36hkq1j6gyl5d8bx5khiiv6fy2m8vkhwiaaiqsliw2sspy4j"; depends=[Rcpp]; }; @@ -4535,7 +4544,7 @@ in with self; { Rwordseg = derive2 { name="Rwordseg"; version="0.3-2"; sha256="10jhfalh45rrcm76hwz4b5yl408ndx2wkr0i3q1avx6z6i45d8s6"; depends=[HMM tmcn]; }; Rwtss = derive2 { name="Rwtss"; version="0.9.1"; sha256="0ihpn96l0bj34ph747q7rfq78sbjjb4hhdjr2a7agc97rrggcr94"; depends=[assertthat dplyr geosphere ggplot2 httr jsonlite lubridate magrittr purrr reshape2 stringr tibble zoo]; }; RxCEcolInf = derive2 { name="RxCEcolInf"; version="0.1-4"; sha256="0qyhxqd5yi4d1prj0i4g3k29zi0mx6wkjx24ynb4arxw6h1vabh4"; depends=[coda lattice MASS MCMCpack mvtnorm]; }; - RxODE = derive2 { name="RxODE"; version="1.1.1"; sha256="1v3865wgw967z3kgri9f11s5jg0yhy90zxjjncfa8p4mpvi8w19w"; depends=[assertthat backports BH checkmate cli dparser ggplot2 inline lotri magrittr memoise PreciseSums qs Rcpp RcppArmadillo RcppEigen rex sitmo StanHeaders sys]; }; + RxODE = derive2 { name="RxODE"; version="1.1.2"; sha256="12x8mi2d4s1qpqic8fp2axgn1gj4nfylsp4i5wkl1if6876kl3ip"; depends=[assertthat backports BH checkmate cli dparser ggplot2 inline lotri magrittr memoise PreciseSums qs Rcpp RcppArmadillo RcppEigen rex sitmo StanHeaders sys]; }; RxnSim = derive2 { name="RxnSim"; version="1.0.3"; sha256="0fi4aic2brfbl6rsnnfwqq7l8ygvlmr98w0v749l3djpgn7sfrig"; depends=[data_table fingerprint rcdk rJava]; }; Ryacas = derive2 { name="Ryacas"; version="1.1.3.1"; sha256="0c258p7ibas4xbq1wh8c1nfqf6r9d0hicrf8mkkyriw4mb6wmzqq"; depends=[magrittr Rcpp]; }; Ryacas0 = derive2 { name="Ryacas0"; version="0.4.3"; sha256="1qsj6hbydi923bvc8qy1k34nl73xf3fsmr5ww3dw9gzn1kzg2470"; depends=[Rcpp settings xml2]; }; @@ -4605,7 +4614,7 @@ in with self; { SCtools = derive2 { name="SCtools"; version="0.3.1"; sha256="0vsv9ipz0ys8nrvg7rwr23svqlc5lvjpa6yss79rnjzxarjcyjjz"; depends=[cvTools dplyr furrr future ggplot2 magrittr purrr stringr Synth]; }; SDALGCP = derive2 { name="SDALGCP"; version="0.4.0"; sha256="0az11v9dj3pwl5q2kr2apac06b5hg0msi5r17qrcik1d65k18hm0"; depends=[geoR maptools mapview Matrix pdist PrevMap progress raster sp spacetime spatstat spatstat_geom splancs]; }; SDAR = derive2 { name="SDAR"; version="0.9-55"; sha256="1a1dy4wpzhfaqxv4x8knazh4kjx042rnkmvxf62r6wkgbfvq4r6b"; depends=[grImport2 linbin readxl]; }; - SDAResources = derive2 { name="SDAResources"; version="0.1.0"; sha256="0ixz7k9bmwr0n8h71ny5di74gr7yqravzyzji4wdl4yh4siynndy"; depends=[]; }; + SDAResources = derive2 { name="SDAResources"; version="0.1.1"; sha256="13zb8sx7913wpj1jhi5sb0ps8fgzxfvjx75p218n166w54rxjqjs"; depends=[]; }; SDCNway = derive2 { name="SDCNway"; version="1.0.1"; sha256="0zmjc3xh4qvwyrq4ma2k6q08f4ny4iqnl5a640pj17jk8awzwbg0"; depends=[dplyr ggplot2 MASS plyr Rdpack]; }; SDD = derive2 { name="SDD"; version="1.2"; sha256="0wzgm1hgjv5s00bpd7j387qbvn5zvyrrd5fr2rgyll4cw9p4sd33"; depends=[Hmisc rgl rpanel sm tseries]; }; SDDE = derive2 { name="SDDE"; version="1.0.1"; sha256="14vql1bypn409w9xcx1jdzff6apiagcz2wng3y24h3mk7yjv9bzy"; depends=[doParallel foreach igraph iterators]; }; @@ -4699,6 +4708,7 @@ in with self; { SNFtool = derive2 { name="SNFtool"; version="2.3.1"; sha256="05hz230aq5wbzhknxzr4iqv3nqjhbpf66n6bp1rc5h2jgz2yfbwq"; depends=[alluvial ExPosition]; }; SNPMClust = derive2 { name="SNPMClust"; version="1.3"; sha256="1gad1jfla4qpczh8vpwyss5cckzgpffsyj0d71r8drbspr4i3r90"; depends=[MASS mclust]; }; SNPassoc = derive2 { name="SNPassoc"; version="2.0-2"; sha256="16raq5nkm24xqfshncwmf46z2naf2fcixgjs9b7gy1368wn3ahzl"; depends=[BiocStyle ggplot2 haplo_stats mvtnorm plyr poisbinom survival tidyr]; }; + SNPfiltR = derive2 { name="SNPfiltR"; version="0.1.0"; sha256="1s6yj71yz4rkbpp27by5sb4lkcwcvyw7zj10wlzgfrm8sy3vv2wj"; depends=[adegenet cluster ggplot2 ggridges gridExtra Rtsne vcfR]; }; SNPknock = derive2 { name="SNPknock"; version="0.8.2"; sha256="121pdgvdffj61hw8x8m76na0cg5iw5gb586q05ikw5d959mmbzrs"; depends=[Rcpp RcppArmadillo RcppProgress Rdpack]; }; SNPmaxsel = derive2 { name="SNPmaxsel"; version="1.0-3"; sha256="0pjvixwqzjd3jwccc8yqq9c76afvbmfq0z1w0cwyj8bblrjpx13z"; depends=[combinat mvtnorm]; }; SNSchart = derive2 { name="SNSchart"; version="1.4.0"; sha256="18rpg2zkqa6bxnbq3s0hlsg4wizz6iw3vckf5z66q3awxqycabg9"; depends=[MASS]; }; @@ -4719,7 +4729,7 @@ in with self; { SPADAR = derive2 { name="SPADAR"; version="1.0"; sha256="0xzhcy5nglwx9j2jkm3i9xj1iw1y9wbf6rwfjyhpiwwq6qn8mn5r"; depends=[mapproj RCEIM]; }; SPARQL = derive2 { name="SPARQL"; version="1.16"; sha256="0gak1q06yyhdmcxb2n3v0h9gr1vqd0viqji52wpw211qp6r6dcrc"; depends=[RCurl XML]; }; SPARSEMODr = derive2 { name="SPARSEMODr"; version="1.1.0"; sha256="03yk46f5yipzascgihh4pihgycvl5ikr6jpb23h5p6snxaz1p1cp"; depends=[data_table future future_apply geosphere lubridate Rcpp tidyverse viridis]; }; - SPARTAAS = derive2 { name="SPARTAAS"; version="1.0.0"; sha256="1kdb1acm6f7vzl8y9r6ypzy7n5ixlxh7snm7yqii8959dg06nfjw"; depends=[ape cluster colorspace crayon dplyr explor FactoMineR foreign fpc ggdendro ggplot2 htmlwidgets ks leaflet maptools mapview markdown plotly rgdal rstudioapi scatterD3 shiny shinydashboard shinyjqui shinyjs shinythemes shinyWidgets sp stringr tidyr]; }; + SPARTAAS = derive2 { name="SPARTAAS"; version="1.1.0"; sha256="0l8ffpad4iq6jdgb4w4lhsq1v4ccjz1485hi018jwd76kr2m0h8z"; depends=[ape cluster colorspace crayon dplyr explor FactoMineR foreign fpc ggdendro ggplot2 htmltools htmlwidgets ks leaflet maptools mapview markdown plotly rgdal rstudioapi scatterD3 shiny shinydashboard shinyjqui shinyjs shinythemes shinyWidgets sp stringr tidyr]; }; SPAS = derive2 { name="SPAS"; version="2020.1.1"; sha256="1bvnyxg3npxv63kikmr30jgc14f1s1a5vfh40qs50nbzq84pl6bx"; depends=[BB MASS Matrix msm numDeriv plyr RcppEigen TMB]; }; SPAr = derive2 { name="SPAr"; version="0.1"; sha256="068jlsvaxx80ih6n86286m2r75cvy6w0m51vpj4gfclhh38py4p4"; depends=[]; }; SPAtest = derive2 { name="SPAtest"; version="3.1.2"; sha256="1x5r4a6jnizhhazxywb2cf2jj2rx6rfynl6xcscmlix6n394xmxk"; depends=[]; }; @@ -4736,7 +4746,7 @@ in with self; { SPLICE = derive2 { name="SPLICE"; version="1.0.0"; sha256="1rmva1nl05f5dfv4nl7bcj6sa8rnpy9ikshasaa54r40217b5832"; depends=[SynthETIC zoo]; }; SPODT = derive2 { name="SPODT"; version="0.9-1"; sha256="01yq429a4s63855bwpn2mqjj2k3cz4187kfpi7n7qqdpdvmxz109"; depends=[rgdal sp tree]; }; SPORTSCausal = derive2 { name="SPORTSCausal"; version="1.0"; sha256="1ww1wi3kflwj1f5slfv0mfi7gbaj7y8rk1m3n15szpxb9zm8grks"; depends=[CausalImpact keras]; }; - SPOT = derive2 { name="SPOT"; version="2.5.8"; sha256="1lznzh9mwxyqfbqyx7082jkvcb1f4c8zk0667c1r3ivdknmchr9n"; depends=[DEoptim ggplot2 glmnet laGP MASS nloptr plgp plotly randomForest ranger rgenoud rpart rsm]; }; + SPOT = derive2 { name="SPOT"; version="2.5.12"; sha256="1pnckqf2j7wq8mkzvvac98m77nkm918ddzvpwv47v4g8zlgl0p30"; depends=[DEoptim ggplot2 glmnet laGP MASS nloptr plgp plotly randomForest ranger rgenoud rpart rsm]; }; SPOTMisc = derive2 { name="SPOTMisc"; version="1.2.18"; sha256="0k23bpnac9fzkin1fa23kix21jid6ycv3akj7vxhgcx64mslvbkm"; depends=[benchmarkme callr emoa ggsci jsonlite keras mlr plotly RColorBrewer rpart_plot sensitivity SimInf smoof SPOT]; }; SPPcomb = derive2 { name="SPPcomb"; version="0.1"; sha256="1kn3pi3c7g7waill1grm382ixbvnc7z8pbgzqd94hxqzgkivhid7"; depends=[nleqslv]; }; SPREDA = derive2 { name="SPREDA"; version="1.1"; sha256="0fn4p5apjq8zgd3zms2b88ga5wbsv86y59ac5x06w75rf071xglv"; depends=[nlme survival]; }; @@ -4765,6 +4775,7 @@ in with self; { SSLR = derive2 { name="SSLR"; version="0.9.3.3"; sha256="0fv1jqri3gpzcfs429pgx4hjqmjrglb4g7nfqdihd2hjmq9k4sql"; depends=[conclust dplyr foreach generics magrittr parsnip plyr proxy purrr RANN Rcpp RcppArmadillo rlang RSSL]; }; SSM = derive2 { name="SSM"; version="1.0.1"; sha256="1h8yyzh5rn5jay70kyzvwirfndi049a5w28qigrjv5rxd7ml84l7"; depends=[]; }; SSN = derive2 { name="SSN"; version="1.1.15"; sha256="057lh2ym82ff3c25vyh97csns4jwlbvxwc4jai0i4yplxf0ccmha"; depends=[BH igraph lattice maptools MASS Matrix rgdal rgeos RSQLite sp]; }; + SSNbayes = derive2 { name="SSNbayes"; version="0.0.1"; sha256="0kp7c4pynisqji6lfwnklsvjbwx44424qkyd4syhsn3rrr510ph5"; depends=[dplyr plyr rstan SSN]; }; SSOSVM = derive2 { name="SSOSVM"; version="0.2.1"; sha256="11wlalpw6yhvv95xr8vvgxgl4jafc2ghzsk5wqyv71ahxarmrlss"; depends=[MASS mvtnorm Rcpp RcppArmadillo]; }; SSP = derive2 { name="SSP"; version="1.0.1"; sha256="0ccg81rsjki1fcqvj6lgmmmy5yw1gxy8khajl1i80qyi4v7ny9hk"; depends=[ggplot2 sampling vegan]; }; SSRA = derive2 { name="SSRA"; version="0.1-0"; sha256="1d0lg2dz8vf1d63366s5apm0ygrsfxivbrsij907r244zj6i1c37"; depends=[shape stringr]; }; @@ -4806,7 +4817,7 @@ in with self; { SampleSize4ClinicalTrials = derive2 { name="SampleSize4ClinicalTrials"; version="0.2.3"; sha256="0s8svsgwh79rcwnskz0my2xqasyp370hn7aixqm9m6zqlvf42zc2"; depends=[]; }; SampleSizeMeans = derive2 { name="SampleSizeMeans"; version="1.1"; sha256="1wbc46n8b8wbcxl21blbzs5728dr8r0l8d3jpzbha8pcav0xrh1m"; depends=[]; }; SampleSizeProportions = derive2 { name="SampleSizeProportions"; version="1.0"; sha256="0mvkvx3nni0l8ys68sq3h2zlbjvksdcdzxqlf03k0ca5bbcmdf9l"; depends=[]; }; - SamplerCompare = derive2 { name="SamplerCompare"; version="1.3.1"; sha256="10h6s7a4020g4mvifk3w1bfljmlv9pxnz5a0hmjjbgwhfh5hi55g"; depends=[mvtnorm]; }; + SamplerCompare = derive2 { name="SamplerCompare"; version="1.3.2"; sha256="09j06ycr749dbr6xbn5pxw7rp1p3cri40z38hf1kp5kvjxkkpy2w"; depends=[mvtnorm]; }; SamplingBigData = derive2 { name="SamplingBigData"; version="1.0.0"; sha256="0khrh7vfqqzpfp16x0ic5ml854wr2fj28cx95s6c0pz91hzlxkns"; depends=[]; }; SamplingStrata = derive2 { name="SamplingStrata"; version="1.5-1"; sha256="01kjm45pc1zfy2xlp9fhynv4x2mzsgjwymr5j7narpmdsm14mxcx"; depends=[doParallel formattable memoise pbapply]; }; SanFranBeachWater = derive2 { name="SanFranBeachWater"; version="0.1.0"; sha256="18w2q3hzcrbmagnjyrn1ikwiyjh723mjb2vy0d8p1a6za0460p9w"; depends=[dplyr lubridate magrittr readr rvest tibble xml2]; }; @@ -4900,7 +4911,7 @@ in with self; { SimDissolution = derive2 { name="SimDissolution"; version="0.1.0"; sha256="1rdsxykh740h22ln635m0ysm00pdw94vp7qhgify4mcvc46c3632"; depends=[alabama dplyr mvtnorm]; }; SimEUCartelLaw = derive2 { name="SimEUCartelLaw"; version="1.0.1"; sha256="1wg9sayk55mp3f2qykvfk0cbqh050vh0n1fhpq4fmlxqll87aml9"; depends=[plot3D plot3Drgl rgl]; }; SimEngine = derive2 { name="SimEngine"; version="1.0.0"; sha256="15rdwpbcypymk9s34iwqzqzqcailhsldzq6c2d9b6jgsp81yy7qk"; depends=[data_table dplyr magrittr pbapply rlang]; }; - SimEvolEnzCons = derive2 { name="SimEvolEnzCons"; version="1.0.2"; sha256="0h3v2lbb3my78brhc5yxk448pr2rlrlyd7l32lczh76j4hx0k0bw"; depends=[ade4 RColorBrewer rgl scatterplot3d]; }; + SimEvolEnzCons = derive2 { name="SimEvolEnzCons"; version="2.0.0"; sha256="0h3j8lp1s3zqb9qgy16gd0rdlbr2g1jqrc4a19zhmix2kygs5012"; depends=[ade4 RColorBrewer rgl scatterplot3d]; }; SimHaz = derive2 { name="SimHaz"; version="0.1"; sha256="04q4xyc1ki1zr3grm3khfg0kbykjy3j9qpg332l7pxp4j3wa3aw3"; depends=[survival]; }; SimInf = derive2 { name="SimInf"; version="8.4.0"; sha256="0fpi5fnr4pgdq30s4p64kv1nl20znxnqk61b2cr7z2pj6yhqa265"; depends=[digest MASS Matrix]; }; SimJoint = derive2 { name="SimJoint"; version="0.3.7"; sha256="03xf8n1fbbq63wz8kyj19h9vqz14z463cv8xqhmaknlamnnyhis5"; depends=[Rcpp RcppArmadillo RcppParallel]; }; @@ -4982,7 +4993,7 @@ in with self; { SpaDES_tools = derive2 { name="SpaDES.tools"; version="0.3.9"; sha256="1wq09r2zhk4in6d98i9g3lp8ajsazabxwgwlrdnp8n7dbpslgp44"; depends=[backports checkmate CircStats data_table fastmatch fpCompare magrittr quickPlot raster Rcpp reproducible rgeos sp]; }; SpaTimeClus = derive2 { name="SpaTimeClus"; version="1.0.1"; sha256="0w2jxaz2kxfksyss5vy6xy499p8jg8lpqlykwgm2srp1fd2l3rs9"; depends=[Rcpp RcppArmadillo]; }; SpadeR = derive2 { name="SpadeR"; version="0.1.1"; sha256="0iy2rkq4vvps1a73kqq37zpsyl4pvl3vh07dwvpfhvp7f8nxbx99"; depends=[]; }; - SparseBiplots = derive2 { name="SparseBiplots"; version="4.0.0"; sha256="0cpibfj106is7k0wq8z21r110wpxpqs393ic9hxx5yx386z5rcav"; depends=[ggplot2 ggrepel gtable rlang sparsepca testthat]; }; + SparseBiplots = derive2 { name="SparseBiplots"; version="4.0.1"; sha256="0jiyafhsddqa3llrp62lf8bgcvs3wp2pxc8ppaxx4zphkifw2yhr"; depends=[ggplot2 ggrepel gtable rlang sparsepca testthat]; }; SparseDC = derive2 { name="SparseDC"; version="0.1.17"; sha256="0gsfj8631s67a0r9qjjll4rbb57nzk5fwm5bbggvf0027b9hk0pp"; depends=[]; }; SparseFactorAnalysis = derive2 { name="SparseFactorAnalysis"; version="1.0"; sha256="0lgfvydxb86r5hks1mf0p0yhgpx8s8fbkc3q6dimc728rw26qcv5"; depends=[directlabels ggplot2 MASS proto Rcpp RcppArmadillo truncnorm VGAM]; }; SparseGrid = derive2 { name="SparseGrid"; version="0.8.2"; sha256="057xbj2bhjm9i32kn39iscnqqdsvsmq0b8c92l8hnf9avf1sx10x"; depends=[]; }; @@ -5157,6 +5168,7 @@ in with self; { TDD = derive2 { name="TDD"; version="0.4"; sha256="193y8brybkjsajrbnlx1sdnw1wyyn9rhlm5wvp4aamqhvi8z13vn"; depends=[pracma RSEIS signal]; }; TDMR = derive2 { name="TDMR"; version="2.2"; sha256="19ljgj5iy41m7rrawzkxkln7acydssk8zm05k3sfb483s8zygwiq"; depends=[adabag SPOT testit twiddler]; }; TDPanalysis = derive2 { name="TDPanalysis"; version="1.0"; sha256="0kvbsgwl7b9a3hn4d3snajqmynbajd2d8lc1na0hri2cv8qm8x9h"; depends=[plyr]; }; + TDbook = derive2 { name="TDbook"; version="0.0.3"; sha256="13jx35mzppvlr6yjrg04zxn6qbhzyfzrwjnzkijxhrk9p46acs7j"; depends=[]; }; TDboost = derive2 { name="TDboost"; version="1.2"; sha256="0sc9vby4892gm5b5h8gbdl4misqvgbkfp8fms53dk83malxkw1zx"; depends=[lattice]; }; TE = derive2 { name="TE"; version="0.3-0"; sha256="15530a5qjlh74c1qji76j25mm4c59gifp34y066f8j21f70rahfs"; depends=[MASS rainbow]; }; TEAM = derive2 { name="TEAM"; version="0.1.0"; sha256="1yj7fw935rr7fh7h2p4ra8d3ynz5c6b30fqzm1djgav1k84wcin2"; depends=[ggplot2 ks plyr]; }; @@ -5181,7 +5193,6 @@ in with self; { TMDb = derive2 { name="TMDb"; version="1.1"; sha256="062n9mi2f9g2xxpnymja57xnpl855d8mwyfwci7a8cq4c7w7avj7"; depends=[httr jsonlite stringi]; }; TMTI = derive2 { name="TMTI"; version="0.1.0"; sha256="16fa512f8hhfsinn57p98yvw58hjymki7xnvrfz9fidkqva0wm1x"; depends=[dplyr]; }; TNC = derive2 { name="TNC"; version="0.1.0"; sha256="0639wvylmk9mapvmz79ij65g1phv3ylc683awi4pgaf9yfwlmjkn"; depends=[]; }; - TNRS = derive2 { name="TNRS"; version="0.1.0"; sha256="146shb1dg4iyaanrdr1l8nqpiqf05la1ai34w74z6wsd1mpcchqy"; depends=[jsonlite RCurl rjson]; }; TOC = derive2 { name="TOC"; version="0.0-5"; sha256="0zk6j1yc4gpvkswnfrlyfvqc69wr4q3ys59y7v03fhzwasqj0an2"; depends=[bit raster rgdal]; }; TOHM = derive2 { name="TOHM"; version="1.4"; sha256="15i9hrvxlnwbs9vrsyrfhnm4xwmi97hss2da0xqs1xj5nmzwymqh"; depends=[EQL igraph Matrix nloptr Rmpfr]; }; TOSTER = derive2 { name="TOSTER"; version="0.3.4"; sha256="1pxcvlw2nhh1sv0d662xc61rykf7kz7f4xjq3yrqf119gjcmps5s"; depends=[ggplot2 jmvcore R6]; }; @@ -5360,10 +5371,11 @@ in with self; { TrtCombo_FactorialExp_SR = derive2 { name="TrtCombo.FactorialExp.SR"; version="4.0.4"; sha256="1kc5nqivsia801hdll5zcl4w6ayx7pabx7xz70l75h1f966ahnr7"; depends=[]; }; TruncatedNormal = derive2 { name="TruncatedNormal"; version="2.2.2"; sha256="05cfn7mdq0hgw97bbb227in9ccjz727sp67xpnpx2r1ajvl6gxdf"; depends=[alabama nleqslv randtoolbox Rcpp RcppArmadillo]; }; Tsphere = derive2 { name="Tsphere"; version="1.0"; sha256="0xgxw2hfj40k5s0b54dcmz7savl8wy4midmmgc7lq4pyb8vd58xx"; depends=[glasso rms]; }; - TukeyC = derive2 { name="TukeyC"; version="1.3-3"; sha256="0bdnfr44hk4c1yh7i9ya95gwbwnplj3hf0k0pl1wm4ghiav39vcq"; depends=[doBy]; }; + TukeyC = derive2 { name="TukeyC"; version="1.3-4"; sha256="1ly09pll86zkn6m8rc6d66f3d7hf98fiij0psaigq6wdgf5an8ig"; depends=[doBy xtable]; }; TukeyRegion = derive2 { name="TukeyRegion"; version="0.1.4"; sha256="1zx6gm0s0nardhb3xm3c53pd46kq6grsknpldnjjfhn3029a3nr7"; depends=[bfp BH ddalpha MASS Rcpp rgl Rglpk]; }; TunePareto = derive2 { name="TunePareto"; version="2.5.1"; sha256="025457qm8blj5jc59qx1wvlcw21b4v9371hlrcf9gkvisksjqvf1"; depends=[]; }; TurtleGraphics = derive2 { name="TurtleGraphics"; version="1.0-8"; sha256="0h77pj7rs3lrqi1y2dm1cbrmj13mjpq6y5nw8bcq0s2kbnkfw67l"; depends=[]; }; + Twitmo = derive2 { name="Twitmo"; version="0.1.1"; sha256="1m1021rrc44y4f68cnsn6zl6sfbpgw4i31p4g2f1nlbd4cmnv2ls"; depends=[dplyr jsonlite magrittr maps plyr quanteda quanteda_textstats readr rlang rtweet stm stopwords stringr tidyr topicmodels]; }; TwitterAutomatedTrading = derive2 { name="TwitterAutomatedTrading"; version="0.1.0"; sha256="1aa6fxxvy0s8al30w19wa2pwzp60zbbdvp5myigv8x26k6w2jwgv"; depends=[curl dplyr jsonlite lubridate magrittr naptime plyr purrr tibble tidytext twitteR]; }; TwoArmSurvSim = derive2 { name="TwoArmSurvSim"; version="0.2"; sha256="0isb1nmm6hxwn6p52an1axj30ilkr5c8xi86zx2b8acivdz2xr12"; depends=[blockrand dplyr simsurv survival]; }; TwoCop = derive2 { name="TwoCop"; version="1.0"; sha256="1ycxq8vbp68z82r2dfg2wkc9zk3bn33d94xay20g2p55lnzl2ifd"; depends=[]; }; @@ -5457,7 +5469,7 @@ in with self; { VUROCS = derive2 { name="VUROCS"; version="1.0"; sha256="1r4hq7az50v7lbyx5w6b4zs2kwi5cypqn9k6ac4kr8jr3jlyanr3"; depends=[doParallel foreach Rcpp RcppArmadillo]; }; VWPre = derive2 { name="VWPre"; version="1.2.4"; sha256="1hhpqxzh9h5dy45r04l1fa1k4a14s0m6z6fhfg22kpwpryszbc44"; depends=[dplyr ggplot2 mgcv rlang shiny tidyr]; }; VaRES = derive2 { name="VaRES"; version="1.0"; sha256="0gw05jiqgirhz3c8skbb07y4h44r6vi68gnd5y7ql455v0c2raza"; depends=[]; }; - VancouvR = derive2 { name="VancouvR"; version="0.1.6"; sha256="1c9wnqv64gdaj74nwn106zmaz03r2i3na8j4m5akfmis1yhj0qgf"; depends=[digest dplyr httr purrr readr rlang sf tibble urltools]; }; + VancouvR = derive2 { name="VancouvR"; version="0.1.7"; sha256="12njm15ah307rsncnmckpx05d4cncqj0paa40xdgp7mfz821s36c"; depends=[digest dplyr httr purrr readr rlang sf tibble urltools]; }; VarBundle = derive2 { name="VarBundle"; version="0.3.0"; sha256="0jfx9gkb3f29lgc0nrz3xc7m2ham0scx9lay7x5a6ira7crga6cr"; depends=[crayon dplyr glue magrittr R6 stringr tibble]; }; VarED = derive2 { name="VarED"; version="1.0.0"; sha256="16j9p2a143y4hqclsv1mig0fccrzjx2r0lll0wz8isjp9x1wzjv8"; depends=[]; }; VarRedOpt = derive2 { name="VarRedOpt"; version="0.1.0"; sha256="0h44m8850q4aksrqj11yr2a2qj37w8fhv0plpvdzcl087ifyj0g9"; depends=[]; }; @@ -5471,7 +5483,7 @@ in with self; { Vdgraph = derive2 { name="Vdgraph"; version="2.2-2"; sha256="1q8l711zbrrj4h1wmpv93nbvlg8xi6kjv22zpidkck8ncpyyla80"; depends=[]; }; VecStatGraphs2D = derive2 { name="VecStatGraphs2D"; version="1.8"; sha256="0jjxdwcj0n6kk5l7hw4zibpikqxhkkik5819qv75z4gqdgg0fgch"; depends=[MASS]; }; VecStatGraphs3D = derive2 { name="VecStatGraphs3D"; version="1.6"; sha256="1pnpgnxdiis4kzwhh17k61aidyan5fp9rzqhvwf6gljb4csqsk54"; depends=[MASS misc3d rgl]; }; - VennDiagram = derive2 { name="VennDiagram"; version="1.6.20"; sha256="1ic1jaxzw98si2p4n1fl4n3myhd7fpw0njb634cwhviwybzv6775"; depends=[futile_logger]; }; + VennDiagram = derive2 { name="VennDiagram"; version="1.7.0"; sha256="1l9mmc8wwn885l2b13kshhrkz53pqigcw6d8gklvv92fx5m5cdvm"; depends=[futile_logger]; }; VertexSimilarity = derive2 { name="VertexSimilarity"; version="0.1"; sha256="0f638y272dbmz5747wxqy9pxasxk3a9f9wf31gf297qx7268ab1m"; depends=[igraph]; }; VertexSort = derive2 { name="VertexSort"; version="0.1-1"; sha256="0n9m5l85ylin6756rsksak94nv0626qd7czhhj6plz4nfrr27sgl"; depends=[igraph snowfall]; }; VeryLargeIntegers = derive2 { name="VeryLargeIntegers"; version="0.1.8"; sha256="0yvm3kkc7ssk85ripdgbxj8gazqb1dfswgjy63c3gb135zi2cbqk"; depends=[Rcpp]; }; @@ -5551,6 +5563,7 @@ in with self; { WorldFlora = derive2 { name="WorldFlora"; version="1.9"; sha256="1v3gpwkygn0b248fd7ghxcqzymdb50snlh4bgrr9j3cp04y8x91f"; depends=[]; }; WrightMap = derive2 { name="WrightMap"; version="1.2.3"; sha256="0i84xkd1agyp45r84zsk8vvc02ln8qhxvl4n72xjqib12b38kqzl"; depends=[]; }; WriteXLS = derive2 { name="WriteXLS"; version="6.3.0"; sha256="0ssjdv7vr66sl1yfg0l38xddrvrfzhf7vdq342izc22bprx9h78b"; depends=[]; }; + WtTopsis = derive2 { name="WtTopsis"; version="1.0"; sha256="0zwx75rgdyh7pjxjvd5xvxqkfryvhq2csn4sd0py0dgmjxb5p3ja"; depends=[]; }; WufooR = derive2 { name="WufooR"; version="1.0.1"; sha256="0iq1lc1b22zdvclkr4yivxxf8z5mdxik7lx9r3b38h2qy2rckqb2"; depends=[dplyr httr jsonlite]; }; XBRL = derive2 { name="XBRL"; version="0.99.19"; sha256="0l25lfy8vzkgdq7i4bafh8b1246f8p2a6sy7c4kswzz4bnxnrihc"; depends=[Rcpp]; }; XHWE = derive2 { name="XHWE"; version="1.0"; sha256="1ca8y9q3623d0vn91g62nrqf3pkbcbkpclmddw5byd37sdrgsi5l"; depends=[]; }; @@ -5560,7 +5573,6 @@ in with self; { XML = derive2 { name="XML"; version="3.99-0.8"; sha256="0l3bsgqw4bicv3sl2bfag7p4rh1y2pcyg0ajr73kkbg85qf6j7q8"; depends=[]; }; XML2R = derive2 { name="XML2R"; version="0.0.6"; sha256="0azfh950r2b7ck3n1vzk3mdll7zy844nx3mbk676jxnj8gg7nxk5"; depends=[plyr RCurl XML]; }; XNomial = derive2 { name="XNomial"; version="1.0.4"; sha256="1mwx302576rmsjllbq2clfxilm3hkyp5bw0wmwqbn0kgv5wpy8z6"; depends=[]; }; - XPolaris = derive2 { name="XPolaris"; version="1.0.2"; sha256="1l05svscgkv9bzkawi2kp9zhchrhxxma3271b828j34pkrnnmq5m"; depends=[curl dplyr ggplot2 httr magrittr purrr raster sf tidyr]; }; XR = derive2 { name="XR"; version="0.7.2"; sha256="0j8rkjw9y7mb0yj24nlisfd84148pnnakz8i2y35y2b8gmh5zhvz"; depends=[jsonlite]; }; XRJulia = derive2 { name="XRJulia"; version="0.9.0"; sha256="0s3g6fkam6hj03mxvw75nzsq3zvz84b71jhrw3v64mdngazdv7zm"; depends=[XR]; }; XRPython = derive2 { name="XRPython"; version="0.8"; sha256="0alg33spiaqf3jwg1qn543nxvbfaqv8gvf5px3grhbgrcmi5mcmj"; depends=[reticulate XR]; }; @@ -5599,7 +5611,7 @@ in with self; { aRbs = derive2 { name="aRbs"; version="0.1.3"; sha256="19s4x2w036xllrsarapmp8rvyxcsky82k4h9mfr2rbhdfid6h1f3"; depends=[crayon data_table dlstats dplyr DT ggplot2 lubridate progress purrr rvest shiny shinyBS shinycssloaders shinydashboard stringr xml2]; }; aRchi = derive2 { name="aRchi"; version="1.0.5"; sha256="1sn321d2qh7vvwfbr62lg3c5ggg8df0w0q6mwcg5pr3jqhiif076"; depends=[circular data_table DiceKriging dplyr FNN gtools lidR pkgcond plyr progress rgl stringr]; }; aRpsDCA = derive2 { name="aRpsDCA"; version="1.1.1"; sha256="0ghg43rd6bnv4jp8pkpd1ixp5l6kq5pr0mxq61q24s24g0m3s64p"; depends=[]; }; - aRtsy = derive2 { name="aRtsy"; version="0.1.3"; sha256="1wivi2c3vmvybb1fyi4kg0lw8z971yz4la4hbbqc6jl5spy88f11"; depends=[dplyr e1071 ggplot2 kknn randomForest Rcpp RcppArmadillo]; }; + aRtsy = derive2 { name="aRtsy"; version="0.1.4"; sha256="0b7wg4jhykxra602g49rqx4mppnfjy2iannhi38idlz9h7f3wbl4"; depends=[dplyr e1071 ggplot2 kknn randomForest Rcpp RcppArmadillo]; }; aRxiv = derive2 { name="aRxiv"; version="0.5.19"; sha256="0rik0jkh1xi9fizzw46xmcw139g6nla072p7f8jgvzbhp7k58ba2"; depends=[httr XML]; }; aSPC = derive2 { name="aSPC"; version="0.1.2"; sha256="1q301rw7dax5v58srg4jlcam1qq2igkaj7kg8wlnlml0hsck4c4a"; depends=[energy mvtnorm]; }; aSPU = derive2 { name="aSPU"; version="1.50"; sha256="0rh21dj5913nxhdndqfhxvm6mvwnacraf7l3bac09awm7cfhk511"; depends=[fields gee MASS matrixStats mvtnorm]; }; @@ -5712,7 +5724,7 @@ in with self; { adjustedcranlogs = derive2 { name="adjustedcranlogs"; version="0.1.0"; sha256="08apfvpqvnnalx230p4qf5ckrwm1sgzras4zfrysgym5d4map9ci"; depends=[cranlogs dplyr lubridate rvest xml2]; }; adklakedata = derive2 { name="adklakedata"; version="0.6.1"; sha256="1lzj3ib4bgfkq5lq12n47pwc52h7k35xbbwj6brwsgx1gd4fx3x6"; depends=[httr rappdirs]; }; adlift = derive2 { name="adlift"; version="1.4-1"; sha256="14q7fnhlqvxdhnfjhdhfmadz241srplbm069a7ybbsql21cphpf3"; depends=[EbayesThresh]; }; - admisc = derive2 { name="admisc"; version="0.18"; sha256="0lvyhvdw0glr8gpfcmprh23rzj6rmw9gmgy0p5vr1rsykp82hcis"; depends=[]; }; + admisc = derive2 { name="admisc"; version="0.19"; sha256="0gyk0yazdg5gb3m5ln9m6mv9pv2klb2in79gnc2vzq8ld7cc82vw"; depends=[]; }; admix = derive2 { name="admix"; version="0.3.2"; sha256="0si2avjqw6rmv2ndsj1ppmqkafnsjx06m2h4jxfrwf2kxfp2rrn1"; depends=[fdrtool Iso latex2exp MASS orthopolynom pracma Rcpp]; }; admixr = derive2 { name="admixr"; version="0.9.1"; sha256="0wszpzs53cbnha13g2ldpq6z5ndw2v2xgrzadqkjm3hsp6akv4bl"; depends=[dplyr magrittr readr rlang stringr tibble]; }; admmDensestSubmatrix = derive2 { name="admmDensestSubmatrix"; version="0.1.0"; sha256="1a5lfm10aj6wdjibdnmffn75zvy6x69w8nqcx2i23gxg6v0xlqcl"; depends=[Rdpack]; }; @@ -5739,7 +5751,6 @@ in with self; { afthd = derive2 { name="afthd"; version="1.1.0"; sha256="0gg2cp3sj28f3pi5rqh737hna3imwarwas01jacm0m2h27587k7y"; depends=[glmnet photobiology R2jags rstpm2 survival]; }; agRee = derive2 { name="agRee"; version="0.5-3"; sha256="1wi8jn14kpsj5z49my6fz8j6zxysddxm8svw86cnzsmnbj6mzq7x"; depends=[coda lme4 miscF R2jags]; }; aggregation = derive2 { name="aggregation"; version="1.0.1"; sha256="0j9g604m2ccc7hcy02539yja9cf3xcbl25gvp838bp4x8w18my46"; depends=[]; }; - aghq = derive2 { name="aghq"; version="0.2.1"; sha256="0c4yk2vcycxryrs0g5jnfsbwr0f2nwq660mmx3vsfsdqml2qdv5w"; depends=[Matrix mvQuad polynom rlang]; }; aglm = derive2 { name="aglm"; version="0.4.0"; sha256="0rcyrzfi3l1k53c9qs1gfrcflnhdnri9sq6py8s6fw4wcn55kf67"; depends=[assertthat glmnet mathjaxr]; }; agop = derive2 { name="agop"; version="0.2-3"; sha256="1z90a07wzn5z4cbafwpfh3l3v1bgq9g89qbdjm51f78zynnb27dk"; depends=[]; }; agriTutorial = derive2 { name="agriTutorial"; version="0.1.5"; sha256="0c0p0bqcrnx34q5brnvgq10wkzahvgyybaz2xfmcghbdvzahd2dx"; depends=[emmeans ggplot2 lattice lmerTest nlme pbkrtest]; }; @@ -5883,13 +5894,13 @@ in with self; { apaText = derive2 { name="apaText"; version="0.1.1"; sha256="1r217k60w027i63nbj24b1rm37m4qf7a6iirc941s945babkxcmb"; depends=[dplyr]; }; apache_sedona = derive2 { name="apache.sedona"; version="1.1.0"; sha256="09g4h9fpymh3kckclhmhp359346pi7dbva8p2zpvnbgy818nil77"; depends=[DBI dbplyr dplyr rlang sparklyr]; }; apc = derive2 { name="apc"; version="2.0.0"; sha256="0vh6iyxm46k8sfa1xgz0y6m619snnm8s072kml5qgiiw5s7bqnpq"; depends=[AER car ChainLadder ggplot2 ISLR lattice lmtest plm plyr reshape survey]; }; - apcf = derive2 { name="apcf"; version="0.1.6"; sha256="1m702y9rrhwbcl7y5f2gdmczi8bfryimckxbgqidnvbr3v084slp"; depends=[Rcpp]; }; + apcf = derive2 { name="apcf"; version="0.1.7"; sha256="071gax2w9b0l74vls59y6syg2swiagz5xkab1x2wmmxk16y49l1s"; depends=[Rcpp]; }; apcluster = derive2 { name="apcluster"; version="1.4.8"; sha256="0lzf2jqm56i74wif6x5sw3j0w2qc4sni49zq2fgbl89b7lwkvchj"; depends=[Matrix Rcpp]; }; apdesign = derive2 { name="apdesign"; version="1.0.0"; sha256="041zyd7ih9nnj92jj9vb9ya1ij9lmj1dzx64q74vyiadw1ix5l66"; depends=[Matrix]; }; ape = derive2 { name="ape"; version="5.5"; sha256="16i9sny7j90zi0k3znfff5lpnj5naxcy1142v73zxslr9g3h3am3"; depends=[lattice nlme Rcpp]; }; apercu = derive2 { name="apercu"; version="0.2.4"; sha256="046gf4dzypl6mmq7xqkyrdasq9rsjxzsii7w4nxkbn4c40kh7bf7"; depends=[pls]; }; apex = derive2 { name="apex"; version="1.0.4"; sha256="1ddzbzpnc17yvbl5yfyp0widqlx48qwlh80xcmyzhv045s680rdk"; depends=[adegenet ape phangorn]; }; - apexcharter = derive2 { name="apexcharter"; version="0.2.0"; sha256="1dlxnsfl629mrcjxfznhhw41i19pzrwmdzk2zc6rp04q621bxg6n"; depends=[ggplot2 htmltools htmlwidgets jsonlite magrittr rlang shiny]; }; + apexcharter = derive2 { name="apexcharter"; version="0.3.0"; sha256="1ds2qil4jwvfbiv39agpiwq3r54pbi4963n6i25nzfkdclw3hbjl"; depends=[ggplot2 htmltools htmlwidgets jsonlite magrittr rlang shiny]; }; aphid = derive2 { name="aphid"; version="1.3.3"; sha256="1jqpn7w5sgy4k49qd9ci6yj89s55gzwl5w5ldw793mzpg6if7lfn"; depends=[kmer openssl Rcpp]; }; apisensr = derive2 { name="apisensr"; version="0.3.0"; sha256="1mis266s4m0hp34m7b7p008dvw7780r8rypgbpk7h5hgd1w5d7m0"; depends=[config episensr ggplot2 ggraph glue golem htmltools igraph rhandsontable rmarkdown shiny shinyjs shinymaterial]; }; aplore3 = derive2 { name="aplore3"; version="0.9"; sha256="0af6klscsxvh4amp519b6r41bzysf61p040fj4l5706bbya1arhw"; depends=[]; }; @@ -5897,7 +5908,7 @@ in with self; { aplpack = derive2 { name="aplpack"; version="1.3.5"; sha256="0kv6sbw8832hlfc6164bfvg1ga4hkfw4c7i11dlz7mbhrw2vqm24"; depends=[]; }; apng = derive2 { name="apng"; version="1.1"; sha256="0g1rs8wdcbqhyjis2r1a4d96jf0486ncnap97yjv08nk574d42wp"; depends=[bitops]; }; apollo = derive2 { name="apollo"; version="0.2.5"; sha256="12x09fbpavvgsnx0pf7q9w9glc8hb7s8cywvm0ym05v64r1v2dca"; depends=[coda Deriv matrixStats maxLik mnormt mvtnorm numDeriv randtoolbox Rcpp RcppArmadillo RcppEigen RSGHB tibble]; }; - appler = derive2 { name="appler"; version="0.1.1"; sha256="1av4gbw11m18b8n1p4gwmn5x79pfdv4bl3w7fiziw3qvb6nj8ak5"; depends=[glue httr jsonlite lubridate rvest xml2]; }; + appler = derive2 { name="appler"; version="0.1.2"; sha256="03sivpv12ssn7dzq780rb4fg4nc7da7nlk6cijzq9yadxgv53svm"; depends=[glue httr jsonlite rvest xml2]; }; applicable = derive2 { name="applicable"; version="0.0.1.2"; sha256="0yzfk4ajdx4l3xivf6v9vn7fqvzfma4842cvjixrng83p2v25sdq"; depends=[dplyr ggplot2 glue hardhat Matrix proxyC purrr rlang tibble tidyr tidyselect]; }; appnn = derive2 { name="appnn"; version="1.0-0"; sha256="0wkpr6lcd68wlzk6n622ab7sd99l837073czn4k56hw8bw9v68j3"; depends=[]; }; approximator = derive2 { name="approximator"; version="1.2-7"; sha256="0smqjdla9mvzy164nsb0pw0sgal3w2wnyhqidp74h0smyczrr1zw"; depends=[emulator mvtnorm]; }; @@ -5921,7 +5932,7 @@ in with self; { archetyper = derive2 { name="archetyper"; version="0.1.0"; sha256="1d4vz7kj7n5j81fwfxvr47if8c7fdycci6n33wf8paac0v2paqli"; depends=[bannerCommenter config feather here knitr log4r ps readr rmarkdown skimr snakecase stringr testthat tidyverse]; }; archetypes = derive2 { name="archetypes"; version="2.2-0.1"; sha256="0ibxsr173ib77gjhid91m85s8gjii4mi2w3d52q5301igv20p7r0"; depends=[modeltools nnls]; }; archiDART = derive2 { name="archiDART"; version="3.4"; sha256="1wvjlg2rwy39czf3qqh9igk9rmk9i7pxa9yl5x9yqmsagwd1av3n"; depends=[geometry gtools sp XML]; }; - archive = derive2 { name="archive"; version="1.1.1"; sha256="1qr622hzbjb0csfhmdyp0xp2340nxz0r7g0zn0cfdb1jh5j70dx9"; depends=[cli cpp11 glue rlang tibble]; }; + archive = derive2 { name="archive"; version="1.1.2"; sha256="1rvjix90yxlwlfy0pdfjg81jnj36sqp5zyxw1phv4fa65b4vh4nf"; depends=[cli cpp11 glue rlang tibble]; }; archiveRetriever = derive2 { name="archiveRetriever"; version="0.1.0"; sha256="1pfq63db0g818vavf9syf2psqvj7xk9n243hqilf21ijgqwfh165"; depends=[anytime dplyr ggplot2 gridExtra httr jsonlite lubridate rvest stringr tibble tidyr xml2]; }; archivist = derive2 { name="archivist"; version="2.3.6"; sha256="0q1qysack30xzxdbvvi56rk7r85hsj4ghls9r70ki7bl3rqwr4c9"; depends=[DBI digest flock httr lubridate magrittr RCurl RSQLite]; }; archivist_github = derive2 { name="archivist.github"; version="0.2.6"; sha256="092fzi505vx9xbk41m86d0isxna42iflp7q2kjiqa6z1ccvim2yx"; depends=[archivist digest git2r httr jsonlite]; }; @@ -5936,11 +5947,11 @@ in with self; { arfima = derive2 { name="arfima"; version="1.7-0"; sha256="0kj8qv6m2fcdw8x735n8fk9cynm0jxi5v9hif0f879sxk6qkxb9y"; depends=[ltsa]; }; argo = derive2 { name="argo"; version="3.0.1"; sha256="1q7gbyk2f8vimwzdmd1mfqyaql2gyawywilwzs6g1716gbk3gd80"; depends=[boot glmnet Matrix XML xtable xts zoo]; }; argoFloats = derive2 { name="argoFloats"; version="1.0.3"; sha256="085bw6jwm73yryibd5znzs4a0qf1f9w2iha15kkpx517y4z71pgn"; depends=[oce]; }; - argon2 = derive2 { name="argon2"; version="0.2-0"; sha256="0kqn06rpb39jlzizjlnc5c44mfic8llrshxn7ljgmyj35lbqwxqh"; depends=[]; }; + argon2 = derive2 { name="argon2"; version="0.4-0"; sha256="09hzl0wz0lw2v7g64rdv0lij2hq36zl37a6rmxwvinmjdzijcsyw"; depends=[]; }; argonDash = derive2 { name="argonDash"; version="0.2.0"; sha256="1wykr7y5375g1nb18ynybccxmd948xrr0gdwxxqsfjf782vlgd2d"; depends=[argonR htmltools shiny]; }; argonR = derive2 { name="argonR"; version="0.2.0"; sha256="15hlvansqnky9bnq4r7xza3hb1hzylmhz8117wxz9lxa1wiky2is"; depends=[htmltools rstudioapi]; }; argosfilter = derive2 { name="argosfilter"; version="0.63"; sha256="0rrc2f28hla0azw90a5gk3zj72vxhm1b6yy8ani7r78yyfhgm9ig"; depends=[]; }; - argparse = derive2 { name="argparse"; version="2.1.1"; sha256="1k6v35g3bppcr896h4v39zh1sxxia1bxxh29xv0mhad1nvmv25j9"; depends=[findpython jsonlite R6]; }; + argparse = derive2 { name="argparse"; version="2.1.2"; sha256="1cz5qlxw3v8smd5vb00wlzy02mx5i0infm5hnq55hnakffd3b5wr"; depends=[findpython jsonlite R6]; }; argparser = derive2 { name="argparser"; version="0.7.1"; sha256="0xcl0ivsbc4iw8s7027q4cx68j6s5lihbby0xa9pmlv4wjmcvdr6"; depends=[]; }; ari = derive2 { name="ari"; version="0.3.5"; sha256="03w99c918jp23d0kl26vx4m7xjicpgwl5rhn9d0fsm4kvv7j87li"; depends=[hms progress purrr rmarkdown rvest text2speech tuneR webshot xml2]; }; ariExtra = derive2 { name="ariExtra"; version="0.3.1"; sha256="1j8x2m9799i5kxrvsf2cjrffb5p6r4zjrr0khsy4i22xn7kyl8nf"; depends=[ari docxtractr httr jsonlite magrittr mime pdftools rmarkdown rvest text2speech tuneR xml2 yaml]; }; @@ -5959,7 +5970,7 @@ in with self; { arrApply = derive2 { name="arrApply"; version="2.1"; sha256="0qy7iwi580rrf3sycsbv6qgxsqcdy9pdbnkdrx81j68qni9iw737"; depends=[Rcpp RcppArmadillo]; }; arrangements = derive2 { name="arrangements"; version="1.1.9"; sha256="0nrlyxgn6667l2rb1q5rvps1anld9aq88qqr3ch2i6zchnqxrdg9"; depends=[gmp R6]; }; arrayhelpers = derive2 { name="arrayhelpers"; version="1.1-0"; sha256="02rl530qxi1idiqpmzg5wr9vl5c7phizhpj64k5pn8xq9zfxbpaz"; depends=[svUnit]; }; - arrow = derive2 { name="arrow"; version="5.0.0.2"; sha256="1ajkcmasj22j5k15ms7iyd1rg9qpdj5jya6nmhzh8z4iiv7gy13j"; depends=[assertthat bit64 purrr R6 rlang tidyselect vctrs]; }; + arrow = derive2 { name="arrow"; version="6.0.0.2"; sha256="110ixq59wgiwwp7ziqhw124qcsdl7la2nlx9gvzk7jhyhn98d03n"; depends=[assertthat bit64 purrr R6 rlang tidyselect vctrs]; }; ars = derive2 { name="ars"; version="0.6"; sha256="0zs1rk3i7pc9wcvxrvjcls194mfbvmkz7cb6pwd1cm3fzjwsyxsp"; depends=[]; }; arse = derive2 { name="arse"; version="1.0.0"; sha256="0ssaalc058m09gfcr1n0s729rx2plia3zkhlynj67drclyvhyb0i"; depends=[dplyr pracma]; }; arsenal = derive2 { name="arsenal"; version="3.6.3"; sha256="0qvs3ld28djnjnggdhqjwq8sbv8zz322qahlvf7dnx35yqf6xkms"; depends=[knitr]; }; @@ -5987,7 +5998,6 @@ in with self; { asnipe = derive2 { name="asnipe"; version="1.1.16"; sha256="0ky4v85gry8r265z8p7mi9kzq6j3s032jg4wddkzjjqgxzyzjl5y"; depends=[MASS Matrix]; }; aspect = derive2 { name="aspect"; version="1.0-5"; sha256="0pbc0daxw20xcbgqyyd5gbs9kmbaf2dq8ajllx0mnfwdcak9jfgj"; depends=[]; }; aspi = derive2 { name="aspi"; version="0.2.0"; sha256="0rhvxw243vvdv3hxa6pi343gcjc2cbxq1jzqirl9k1l4i3897l87"; depends=[]; }; - aspline = derive2 { name="aspline"; version="0.1.0"; sha256="1xywp471ly6f0n88lwhpwlg54fizdkjxksli9c60vbi8r56n46mr"; depends=[dplyr fda ggplot2 magrittr Matrix mgcv pryr pspline Rcpp reshape2 rlang splines2 tidyr]; }; asremlPlus = derive2 { name="asremlPlus"; version="4.3-21"; sha256="0clyzdvxhwmg7w70l0yacsc50dd6284spdwglyrdfxkz85xdhwqg"; depends=[dae doParallel dplyr foreach ggplot2 RColorBrewer reshape sticky stringr]; }; assemblerr = derive2 { name="assemblerr"; version="0.1.0"; sha256="13vhn73v2429smf4av414xrm9vmbcxwhfgbq33zfdn7qyrj8wpv1"; depends=[cli glue magrittr purrr rlang tidyselect vctrs]; }; r_assert = derive2 { name="assert"; version="1.0.1"; sha256="0n5l48yb0djl6rdj50p1dslpw3c5kbi15yz6z6rdgic575gjwzdc"; depends=[]; }; @@ -6010,7 +6020,7 @@ in with self; { assertive_types = derive2 { name="assertive.types"; version="0.0-3"; sha256="0zxq1jfrzgw95ll7alvm0xnk7aihjdksngq4ya2whyvfjbmv4vdb"; depends=[assertive_base assertive_properties codetools]; }; assertr = derive2 { name="assertr"; version="2.8"; sha256="00764vv86r3bn4r85in4w637harffyw605fgq0dj6mrbrwcfb650"; depends=[dplyr MASS rlang]; }; assertthat = derive2 { name="assertthat"; version="0.2.1"; sha256="17wy5bdfzg73sg2clisg1k3zyn1adkj59x56m5nwia2k8z67zkw5"; depends=[]; }; - assignPOP = derive2 { name="assignPOP"; version="1.2.2"; sha256="0ws40rrz3zql8xsa0r8hgb81l75isglzsfhnb8jbvig6s9m058yi"; depends=[caret doParallel e1071 foreach ggplot2 MASS randomForest reshape2 stringr tree]; }; + assignPOP = derive2 { name="assignPOP"; version="1.2.4"; sha256="1zzapgzf09l39bckwykzr8im2wxmndpmzykll2wi7njwlklpjry3"; depends=[caret doParallel e1071 foreach ggplot2 MASS randomForest reshape2 stringr tree]; }; assignR = derive2 { name="assignR"; version="2.1.1"; sha256="10494lg0ph5c4ks2z2ndajx3fiwv2my4i32jg89l0z0dxgfaz7lf"; depends=[maptools mvnfast raster rgdal rlang sp]; }; assist = derive2 { name="assist"; version="3.1.7"; sha256="0avxaa3v4gvb5d7fg761f9l5nr8nyqdq6sq408zpyaki6s6q3acf"; depends=[lattice nlme]; }; assocInd = derive2 { name="assocInd"; version="1.0.1"; sha256="16yzgvlqbapjhvzm5nw8vfrhh8mp9llnhck4bpgmszyrh93z1ha5"; depends=[]; }; @@ -6054,7 +6064,7 @@ in with self; { audrex = derive2 { name="audrex"; version="1.0.1"; sha256="06r9gn3rdqxln197iyajdsx8ikq0m2hik171403y3dxxr5bf8jsf"; depends=[abind fANCOVA ggplot2 imputeTS lubridate modeest moments narray purrr rBayesianOptimization readr scales stringr tictoc xgboost]; }; augSIMEX = derive2 { name="augSIMEX"; version="3.7.4"; sha256="0620yxqi160ar91shl5macn890zpc60c9nqy4w8i6m7sskv6gl3z"; depends=[Formula MASS nleqslv Rcpp]; }; augmentedRCBD = derive2 { name="augmentedRCBD"; version="0.1.5"; sha256="1bfb1jqakghf1nb3zwzf69cywwxwr1whzvyig8g3qa8ciq5f1h3i"; depends=[dplyr emmeans flextable ggplot2 mathjaxr moments multcomp multcompView officer Rdpack reshape2 stringi]; }; - auk = derive2 { name="auk"; version="0.5.0"; sha256="0d7xvpnszsx5p5ik0i8xvzqazd8ll8sg0mwv80pd9gpgriwvpxv2"; depends=[assertthat countrycode dplyr httr magrittr rlang stringi stringr tidyr]; }; + auk = derive2 { name="auk"; version="0.5.1"; sha256="0mf2rwf7sihmk6mla87gznh0s1rqxpijcjjv035iq3id6c81h03l"; depends=[assertthat countrycode dplyr httr magrittr readr rlang stringi stringr tidyr]; }; aurelius = derive2 { name="aurelius"; version="0.8.4"; sha256="00bpf9sggvnajpmg3zsdgfjinkb6wbrcf1ris7qfhh1rp5rz4m4m"; depends=[gbm glmnet jsonlite]; }; auth0 = derive2 { name="auth0"; version="0.2.1"; sha256="077nqh28q3b9jb25fy0157l06zpx3x0rg4z5dz2dqsh88xy4nhqj"; depends=[htmltools httr shiny shinyjs yaml]; }; auto_pca = derive2 { name="auto.pca"; version="0.3"; sha256="01m2ldpcxzj7fhgmr9wp4ha3gqdyh7l5bkrnw83smcbq5229hsyy"; depends=[plyr psych]; }; @@ -6078,6 +6088,7 @@ in with self; { automultinomial = derive2 { name="automultinomial"; version="2.0.0"; sha256="04rjg3xjlhnkchzvdxqm762z5abm81s5b9czgzmli30zh07bf3fd"; depends=[igraph Matrix numDeriv]; }; autoplotly = derive2 { name="autoplotly"; version="0.1.4"; sha256="1z577jvadgiz028z7x0786d3qhlkrvv9i34xmllizvg94kxv3bl1"; depends=[ggfortify ggplot2 plotly]; }; autoshiny = derive2 { name="autoshiny"; version="0.0.2"; sha256="0s06ynnirgsh19x8qq4020piirkhvjqpvz372syygvlal062y6cn"; depends=[shiny]; }; + autostats = derive2 { name="autostats"; version="0.1.0"; sha256="0yia8hli3d8pafr82a8syzq35jq2jdjsl4w7dahnfaq6bjzkdzx2"; depends=[BBmisc broom broom_mixed Ckmeans_1d_dp dials dplyr flextable framecleaner ggeasy ggplot2 ggstance ggthemes glmnet gtools janitor jtools lubridate magrittr Matrix nnet parsnip party patchwork presenter purrr readr recipes rlang rlist rsample stringr tibble tidyr tidyselect tune workflows xgboost yardstick]; }; autostsm = derive2 { name="autostsm"; version="1.6"; sha256="086ndq164bbp7fczzwdx3ryva3qc2hnswm7mlig2jmn0w01ivwr0"; depends=[data_table doSNOW foreach forecast ggplot2 ggrepel gridExtra lmtest lubridate maxLik progress Rcpp RcppArmadillo sandwich strucchange zoo]; }; autothresholdr = derive2 { name="autothresholdr"; version="1.3.11"; sha256="1w0lxi9bbnffx0gjmll98ki4zh7i6v8wbjd0ziwzca1qwq3z4a9i"; depends=[checkmate ijtiff magrittr purrr Rcpp rlang strex stringr]; }; av = derive2 { name="av"; version="0.6.0"; sha256="0g6815y24h4la714a5bkj7nj4n39jycfynkli6y3jlijql96j2il"; depends=[]; }; @@ -6105,7 +6116,7 @@ in with self; { azuremlsdk = derive2 { name="azuremlsdk"; version="1.10.0"; sha256="0s64kjrmcdnjdwh5mdm5vxgvrl9ghvfv6bair7qfzz32jlab99m0"; depends=[DT ggplot2 htmltools plyr reticulate rstudioapi servr shiny shinycssloaders]; }; b6e6rl = derive2 { name="b6e6rl"; version="1.1"; sha256="17scdskn677vaxx1h2jypqaffvjgczryplg17nr3wigi1x0cxg7a"; depends=[]; }; bPeaks = derive2 { name="bPeaks"; version="1.2"; sha256="1z6jghcmw0lwv17ms7gdp5zzimaawq3ahbwkxa4062g373592smd"; depends=[]; }; - bRacatus = derive2 { name="bRacatus"; version="1.0.4"; sha256="1sms54y3b2lkcdvn7hihil9wrxyhyvanisscg2xqdzjgr7wf30da"; depends=[data_table geojsonio jsonlite maptools plotfunctions raster rgbif rgeos rworldmap sp]; }; + bRacatus = derive2 { name="bRacatus"; version="1.0.5"; sha256="1ir5q8q9kssbcakfi0lpixxgcmcla2p3j8a290p5h3zddbp41az6"; depends=[data_table geojsonio jsonlite maptools plotfunctions raster rgbif rgdal rgeos rworldmap sp]; }; bReeze = derive2 { name="bReeze"; version="0.4-3"; sha256="17nc6qvw9l6sq8knd1mk193md2y3z1jlcjymqzl389yxj8s0i2il"; depends=[lubridate]; }; bSims = derive2 { name="bSims"; version="0.3-0"; sha256="055hqa5w4gaqz9mms9yj85wg0pgl6xa568nbjxm4qc75rsy91qg5"; depends=[deldir intrval MASS mefa4 pbapply]; }; bWGR = derive2 { name="bWGR"; version="1.6.6"; sha256="1m5spafvl5pn0s60vaf8wz7iaibsa7laq7kp8y9xj20pp3f76hvr"; depends=[Rcpp]; }; @@ -6122,7 +6133,7 @@ in with self; { backShift = derive2 { name="backShift"; version="0.1.4.3"; sha256="1dhmq51w07vcqlngsb04ip0wqbgqq2xdfdm1w82r082f07ywqb16"; depends=[clue ggplot2 igraph MASS matrixcalc reshape2]; }; backbone = derive2 { name="backbone"; version="1.5.1"; sha256="06awrjcs78h7i632v5dyfqj0gldnww4xkn4j0rffimf3aiwxm7l9"; depends=[igraph Matrix network PoissonBinomial]; }; backpipe = derive2 { name="backpipe"; version="0.2.3"; sha256="12k2cv9x8h0b002m9c8g4vj5a7chp4b8jqz377ia0diqw89dydpm"; depends=[]; }; - backports = derive2 { name="backports"; version="1.2.1"; sha256="1mf2nz78l97lbxyagv55bcxrny51ds8g28h307cfa1g3ayylp0x2"; depends=[]; }; + backports = derive2 { name="backports"; version="1.3.0"; sha256="0bc14x4gyw4gnvm4hrvg5cmmrq449kfza3l14wdgp642ra8iw8sg"; depends=[]; }; backtest = derive2 { name="backtest"; version="0.3-4"; sha256="1s0mf247dz2vvyf4m3sp9xiqhv7xcs4rphyg9gdcy73060sah2ad"; depends=[lattice]; }; bacondecomp = derive2 { name="bacondecomp"; version="0.1.1"; sha256="1sd6pbhmx8vxz5c2cvvadbjy7p15y91gzs3n0ish7h5br1vq8fpm"; depends=[]; }; bacr = derive2 { name="bacr"; version="1.0.1"; sha256="14zr1v4rihx0ra3x0vsb81vsz0g8gzskkdxkg7nhiz835hp2fiy8"; depends=[MCMCpack]; }; @@ -6193,14 +6204,14 @@ in with self; { bayesGARCH = derive2 { name="bayesGARCH"; version="2.1.10"; sha256="1jb7jfyxp210pc8myv9lnwb55hy19d39m10kkhs5lyjwc2lv0401"; depends=[coda mvtnorm]; }; bayesImageS = derive2 { name="bayesImageS"; version="0.6-1"; sha256="0hz6ynvrhsxp097zswdlascza5n27cq4hfaqdc3r8b7crmh7lrim"; depends=[Rcpp RcppArmadillo]; }; bayesLife = derive2 { name="bayesLife"; version="5.0-3"; sha256="1dlaqp6qd6qi8p8ni3z7adjrsn44njzvngyga4a97crp3jfqpx7k"; depends=[bayesTFR car coda data_table hett wpp2019]; }; - bayesPO = derive2 { name="bayesPO"; version="0.2.0"; sha256="01j98m093jb7lsfb5iw2g0v5351sq0mdxvd37rwn2zjj8fmb4v4l"; depends=[coda Rcpp RcppEigen RcppProgress]; }; + bayesPO = derive2 { name="bayesPO"; version="0.3.1"; sha256="1n9m89lhdj0ng3570x23kcjyjv85bky0hqrs1sl7qxjdzxacsisl"; depends=[coda Rcpp RcppEigen RcppProgress]; }; bayesPop = derive2 { name="bayesPop"; version="8.1-3"; sha256="018nwm6nmg0cpgkmiiqijry59f1adx103wy5dgz8a64f9hj4nqdi"; depends=[abind bayesLife bayesTFR data_table fields googleVis MortCast plyr reshape2 rworldmap wpp2012 wpp2019]; }; bayesQR = derive2 { name="bayesQR"; version="2.3"; sha256="1c6y7r9h9626ghp68pl5k1g0l95fwd6dp0jfznmhy53qza0ny8z4"; depends=[]; }; bayesSurv = derive2 { name="bayesSurv"; version="3.3"; sha256="00brysldz0zbjbjs0qnd2mbpc3ipyz7224bnbwlf8d3b6ivw8iwv"; depends=[coda smoothSurv survival]; }; - bayesTFR = derive2 { name="bayesTFR"; version="7.0-5"; sha256="1a19n67bb3wk6ywmcdv19cg640d5vd7r8p3p6hpgc3njj1ifp5fl"; depends=[coda data_table MASS mvtnorm wpp2019]; }; + bayesTFR = derive2 { name="bayesTFR"; version="7.1-1"; sha256="0grkrcgn1x1qaajyamzlp7csmsmmslbjbmajk42m5g7cxxljvylr"; depends=[coda data_table lifecycle MASS mvtnorm wpp2019]; }; bayesZIB = derive2 { name="bayesZIB"; version="0.0.2"; sha256="0lwrgzfbp3cjjc462va2vv5s43lp9j9hmydg3g2qs9w92mc7m77d"; depends=[BH ggplot2 Rcpp RcppEigen rstan StanHeaders]; }; bayesammi = derive2 { name="bayesammi"; version="0.1.0"; sha256="1vfcmk47x71c5akj3ppxzb74293pikspknkkv08f8p15v0chk7fs"; depends=[dplyr ggplot2 lme4 magrittr MASS mvtnorm rlang rstiefel scales tibble tidyr tmvtnorm]; }; - bayesanova = derive2 { name="bayesanova"; version="1.4"; sha256="1azr1yjigy3hygvzngs6b0m92kskxv0kga80j7ccsycawygmkjcs"; depends=[]; }; + bayesanova = derive2 { name="bayesanova"; version="1.5"; sha256="1h2z5r1ikrdi1j0cpzy3qdw28m1i6ddz6006amdnz2r3b0wivffm"; depends=[MCMCpack]; }; bayesbio = derive2 { name="bayesbio"; version="1.0.0"; sha256="08qa4lzkrcwin7n3kzfqfdlnlqahdmjl1lxpdh29n780cgyjfvs0"; depends=[]; }; bayesboot = derive2 { name="bayesboot"; version="0.2.2"; sha256="0976ryd0gbw3kpmxg2qxyp1m2swnrpa86vdhvqrqxp7fcrs8cs2z"; depends=[HDInterval plyr]; }; bayesbr = derive2 { name="bayesbr"; version="0.0.1.0"; sha256="0zx123xqw2qglwxsnq0jy56kwk6zczslagapij9aj9n5bsifbcmx"; depends=[BH coda dplyr fdrtool Formula ggplot2 loo magrittr Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders stringr tidyr]; }; @@ -6218,7 +6229,7 @@ in with self; { bayesmeta = derive2 { name="bayesmeta"; version="2.7"; sha256="1zl2y916jgl40mqzphgjwsqr4mbxvvggp0irirbb9nyzj5frqpjg"; depends=[forestplot metafor numDeriv]; }; bayesmix = derive2 { name="bayesmix"; version="0.7-5"; sha256="0s1a221vwia92pinja2r5b5abm4dhcrs81m4frqnf0522qh0y75f"; depends=[coda rjags]; }; bayesmodels = derive2 { name="bayesmodels"; version="0.1.1"; sha256="1m9428fzirpfzypd2zdcqhjv2cm05s3qmlxj4ymz6i1dg32svqzr"; depends=[BASS bayesforecast brms bsts cli crayon dials dplyr magrittr modeltime parsnip purrr rlang Rlgt rstan rstudioapi tibble timetk workflows]; }; - bayesmove = derive2 { name="bayesmove"; version="0.2.0"; sha256="1ir8zasnymfll6za35kzsgdfm6l5hryrss2aa3m07zzd2rb53xbc"; depends=[dplyr dygraphs furrr future ggplot2 leaflet lubridate magrittr MCMCpack move progress purrr Rcpp RcppArmadillo rlang sf shiny tictoc tidyr]; }; + bayesmove = derive2 { name="bayesmove"; version="0.2.1"; sha256="1l6i8qh7l53x0133gjc5jvri4vnnfviq9y3mcr1kfa5j84gfnmsf"; depends=[dplyr dygraphs furrr future ggplot2 leaflet lubridate magrittr MCMCpack progress progressr purrr Rcpp RcppArmadillo rlang sf shiny tictoc tidyr]; }; bayesnec = derive2 { name="bayesnec"; version="2.0.2"; sha256="1ps00byg0s0wf86w9nq6yhn4ak1ca6gmkafz3bmycr4alxhgjdqr"; depends=[brms dplyr evaluate extraDistr formula_tools ggplot2 loo purrr rlang tidyr tidyselect]; }; bayesplay = derive2 { name="bayesplay"; version="0.9.2"; sha256="06i16a36b26p0r635bl37kvk7k083p970154yhkv80p7qc84n4sv"; depends=[gginnards]; }; bayesplot = derive2 { name="bayesplot"; version="1.8.1"; sha256="0aman4273i8hy3z0qay1nrsr7v27m4icm1j6f4w59ylix80l5myq"; depends=[dplyr ggplot2 ggridges glue reshape2 rlang tibble tidyselect]; }; @@ -6227,7 +6238,7 @@ in with self; { bayesrules = derive2 { name="bayesrules"; version="0.0.2"; sha256="0a1a1aq91ary985xd0qqc1sgjlyfcrjh7ngzcy4f7j09a7ch3j4b"; depends=[dplyr e1071 ggplot2 groupdata2 janitor magrittr purrr rstanarm]; }; bayess = derive2 { name="bayess"; version="1.4"; sha256="0axipk5hn2hw3g4dfh7y3xa0dxqmi8kqpbr77nl14y7ydpija6xm"; depends=[combinat gplots MASS mnormt]; }; bayest = derive2 { name="bayest"; version="1.4"; sha256="1ax1z5aw0irpr5qmfscvbssrz58ablx0nkl0d9fx51f2g1cwm65n"; depends=[MCMCpack]; }; - bayestestR = derive2 { name="bayestestR"; version="0.11.0"; sha256="0bwfw1lh4yp8y77sfmxzqqqy5aw59q1lqhfcssa46ph6d4hyxwic"; depends=[datawizard insight]; }; + bayestestR = derive2 { name="bayestestR"; version="0.11.5"; sha256="0lz8mzacxgmll576p88654mrvlk4pzvhwwghvn5pm7zxisgx0kq0"; depends=[datawizard insight]; }; bayesvl = derive2 { name="bayesvl"; version="0.8.5"; sha256="1gb2in8hjiqb3daqz6phn1639i6p2w641kxrm3zh4rm3d6hg6hzr"; depends=[bayesplot bnlearn coda dplyr ggplot2 reshape2 rstan StanHeaders viridis]; }; bayfoxr = derive2 { name="bayfoxr"; version="0.0.1"; sha256="1295296mbjpmd0bg1pfxvyp0az3sry6gsq9ir3l8x64w5a4qrzd5"; depends=[]; }; baymedr = derive2 { name="baymedr"; version="0.1.1"; sha256="0lsp9g9xjwwf2znh4vld41pgdn55ncvmdsyg84ifhdqzjrsgwc6f"; depends=[rlang stringr]; }; @@ -6251,7 +6262,7 @@ in with self; { bcaboot = derive2 { name="bcaboot"; version="0.2-3"; sha256="0b1m4lwi9hwd4xswabzyy2svc91ppiym8bi9f1wj79w5sg2hxpn7"; depends=[]; }; bcc = derive2 { name="bcc"; version="1.3.1"; sha256="0ac0wasdifd0v47r9sxrsix5hv7masiphn6dyxpqdrd11z7iimgz"; depends=[qcc]; }; bccp = derive2 { name="bccp"; version="0.5.0"; sha256="0g9yzqzf977rx97c77krdhl7c499r58xcbzx0nihk73143ynf17w"; depends=[pracma]; }; - bcdata = derive2 { name="bcdata"; version="0.2.4"; sha256="07l47gpzd6r465xad1bc0w44yzy87qa3j0vpa6pv61h30pph43zh"; depends=[cli crul DBI dbplyr dplyr glue jsonlite leaflet leaflet_extras purrr readr readxl rlang sf tibble tidyselect xml2]; }; + bcdata = derive2 { name="bcdata"; version="0.3.0"; sha256="13s8x7zr8650jzkjlripikha7sk4x70ld9pgxm057m2vqqplj8av"; depends=[cli crul DBI dbplyr dplyr glue jsonlite leaflet leaflet_extras purrr readr readxl rlang sf tibble tidyselect xml2]; }; bcf = derive2 { name="bcf"; version="1.3"; sha256="1f8szjgsyhnff3zzmmy7bnsam12ywj46n3fxsj1y3fn1m5wnd8mz"; depends=[Rcpp RcppArmadillo]; }; bcfrailph = derive2 { name="bcfrailph"; version="0.1.0"; sha256="0l5v3bc8xw71cj012sbmq1f0glg7m545jzqyg01gzl8kbgm3lbbj"; depends=[survival]; }; bcfrailphdv = derive2 { name="bcfrailphdv"; version="0.1.0"; sha256="06xzz5m4s5fp36j3saxmpw1p0bhh42cjd35cadwkk3vg836kj1na"; depends=[bcfrailph survival]; }; @@ -6362,7 +6373,7 @@ in with self; { bidask = derive2 { name="bidask"; version="0.1.0"; sha256="1npiz3nmbly0lhha90b6v2ml8fmi32rdjr6bx7f008aa9p4cpcip"; depends=[xts zoo]; }; bife = derive2 { name="bife"; version="0.7.1"; sha256="0d1hfzji3769nsa5xvlmn7sbn21igwx3aa7vxlcdn1b9ykh7fx76"; depends=[data_table Formula Rcpp RcppArmadillo]; }; bifurcatingr = derive2 { name="bifurcatingr"; version="1.0.0"; sha256="0msbdr2m4xmvnd00yklk2b8c8qwr11d5gc1x22sqd16fgj9y0qvf"; depends=[igraph MASS]; }; - bigGP = derive2 { name="bigGP"; version="0.1-6"; sha256="0fwm06rzx1qbh16ii93x26i4v4yb50jk67k3qmzyr3gr4z9b9xhg"; depends=[Rmpi]; }; + bigGP = derive2 { name="bigGP"; version="0.1-7"; sha256="0slg87g6lrdlzlcqxmcyxcwzrnmiz6ps0n14p27zcv0n687xifid"; depends=[Rmpi]; }; bigMap = derive2 { name="bigMap"; version="2.3.1"; sha256="08c9s5sk672j70d6pnva7z52i4s3knkby06lva9al9n8a3jiwsvz"; depends=[BH bigmemory colorspace RColorBrewer Rcpp RcppArmadillo]; }; bigQueryR = derive2 { name="bigQueryR"; version="0.5.0"; sha256="051c8rkj77dm78237dzhf3lcdawv0xv72pwfiim9bi89z9mp6f9m"; depends=[assertthat googleAuthR googleCloudStorageR httr jsonlite]; }; bigReg = derive2 { name="bigReg"; version="0.1.2"; sha256="1hmvh5j40zpzz6c88hmikphps8rb741yvkg60dxmkfl8gxqsrp3w"; depends=[MASS Rcpp RcppArmadillo uuid]; }; @@ -6439,7 +6450,7 @@ in with self; { bioRad = derive2 { name="bioRad"; version="0.5.2"; sha256="1kx1vh6p37170f1crylwyzap0c7s5d82rx7qqi95f8d26niqcjn9"; depends=[assertthat curl data_table fields ggmap ggplot2 lubridate lutz maptools raster rgdal rhdf5 sp tidyr viridis viridisLite]; }; bioacoustics = derive2 { name="bioacoustics"; version="0.2.7"; sha256="0jsvmx4kx1jx4ljrrax9v3nr3fs2r0kg4n1a0qbwcbfbgykqng87"; depends=[htmltools moments Rcpp stringr tuneR]; }; bioassays = derive2 { name="bioassays"; version="1.0.1"; sha256="1y32wxkv14l7r0f35y4hxxxh3zpw2gd4hsjmkajhmzmnvg5jdw78"; depends=[dplyr ggplot2 magrittr nplr reshape2 rlang]; }; - biocompute = derive2 { name="biocompute"; version="1.0.6"; sha256="19armp8jc33b5j5avavifv2w454gmvp3nvwaxqh6dlqmjzms43lw"; depends=[cli crayon curl digest httr jsonlite jsonvalidate magrittr rmarkdown stringr uuid yaml]; }; + biocompute = derive2 { name="biocompute"; version="1.1.0"; sha256="05pqrm1j0d21w70jnsf9zvh55h85i676xwvqzsk51llw52v16d4d"; depends=[cli crayon curl digest httr jsonlite jsonvalidate magrittr rmarkdown stringr uuid yaml]; }; biogas = derive2 { name="biogas"; version="1.23.2"; sha256="05g6nyi872skvr34kw5c71ggnnjc3fv95imc327yjqhmqmwx3m19"; depends=[]; }; biogeo = derive2 { name="biogeo"; version="1.0"; sha256="14sqgg8b06gp5dajxvyj9s3ndsk7jpkfr0mkyl2l61kgp6qx53rh"; depends=[maptools raster sp stringr vegan]; }; biogram = derive2 { name="biogram"; version="1.6.3"; sha256="1y7yaa6xwv11b6a4qf4qb3d7rsz0yiiq1k5mb0dbm3avydnl9c4b"; depends=[combinat entropy partitions slam]; }; @@ -6492,7 +6503,7 @@ in with self; { blaise = derive2 { name="blaise"; version="1.3.8"; sha256="1jvjli349rzyiij80ggb27fsqp0hd1fz2pw93rj6cssgipl911xl"; depends=[dplyr readr stringr tibble]; }; blandr = derive2 { name="blandr"; version="0.5.1"; sha256="1rqas71hlf000b3z824d8ljshf8bx91bbrzaxxnx5n3chv19w6z6"; depends=[ggplot2 jmvcore knitr R6 rmarkdown stringr]; }; blapsr = derive2 { name="blapsr"; version="0.5.5"; sha256="1h6bdlawb3wzfw0l62k8b440yvvdh2liylhlnf3jfhdh1fivxq95"; depends=[coda MASS Matrix RSpectra sn survival]; }; - blaster = derive2 { name="blaster"; version="1.0.3"; sha256="0ch03j5z1zlfs3jmp7p4pwhava89k9irixr1p3dx45090q05j3a1"; depends=[Rcpp]; }; + blaster = derive2 { name="blaster"; version="1.0.4"; sha256="0y2vdksmy1xngqvf7wxy5yf58830sm0bi82vn02yba1x6345ghjr"; depends=[Rcpp]; }; blastula = derive2 { name="blastula"; version="0.3.2"; sha256="084mk6xb8ivqrp8anvisfk8rvwi7qfrp5kmy66vpihmjmqh7dkyc"; depends=[base64enc commonmark curl digest dplyr fs getPass here htmltools httr jsonlite magrittr mime rlang rmarkdown stringr uuid]; }; blatent = derive2 { name="blatent"; version="0.1.1"; sha256="1jnf3i7s3mn99ff8yzygxys0w8qf6vrfk16iqgxh7jbivbrczysk"; depends=[coda Matrix mnormt R6 Rcpp RcppArmadillo truncnorm]; }; blavaan = derive2 { name="blavaan"; version="0.3-17"; sha256="1rgi4wfwa6sh78vs7w1mpdfxi663840xg4kkqlgz28jscv64z8dd"; depends=[bayesplot BH coda future_apply lavaan loo Matrix MCMCpack mnormt nonnest2 Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; @@ -6520,6 +6531,7 @@ in with self; { blogdown = derive2 { name="blogdown"; version="1.5"; sha256="08h4zsrw12xkllyx3czmpxjy1dnqr6vrk410zp7m75xzsbq5kg5q"; depends=[bookdown htmltools httpuv jsonlite knitr later rmarkdown servr xfun yaml]; }; blorr = derive2 { name="blorr"; version="0.3.0"; sha256="1ynvg6ar7c7p01225q9czy4gxks0p1vw3sx207l7vzqxw20wb1bn"; depends=[car data_table ggplot2 gridExtra lest Rcpp]; }; blrm = derive2 { name="blrm"; version="1.0-1"; sha256="0p0nmbxil4l89fcryrgsg9mxzb5fyg93p50aqkjy00ms05hwd0hx"; depends=[boot mvtnorm openxlsx reshape2 rjags]; }; + blsR = derive2 { name="blsR"; version="0.2.1"; sha256="0wbcpvgj72fkhv4z1gllf9lkq45mdwwnf8dnmaqwl9i5qnihy1yy"; depends=[dplyr httr jsonlite purrr rlang]; }; bltm = derive2 { name="bltm"; version="0.1.0"; sha256="1sx4ii65ddvdw45za8j320v1s9d1pz5k2gx979yymhyxi8fmq69z"; depends=[mvnfast Rfast]; }; bmabasket = derive2 { name="bmabasket"; version="0.1.1"; sha256="1hgbl1x38snhzbh5j1qz81azkdwzmm4idacyyyrn895vl71ypfrn"; depends=[partitions Rcpp RcppArmadillo]; }; bmass = derive2 { name="bmass"; version="1.0.3"; sha256="0dafixd996lamn5kfbqpiawblalhyw1gi394j46n2sij2r209d76"; depends=[]; }; @@ -6536,7 +6548,7 @@ in with self; { bmp = derive2 { name="bmp"; version="0.3"; sha256="0jd67r11bn98hjwgyr6gas423787xy7ji2hq7ay80blkkcj91xxx"; depends=[]; }; bmrm = derive2 { name="bmrm"; version="4.1"; sha256="1brdd5mhr5282wkdc62lgsqcxw077p69rknjk7fjcs282ahcik2s"; depends=[LowRankQP lpSolve matrixStats Rcpp]; }; bmscstan = derive2 { name="bmscstan"; version="1.1.0"; sha256="1mr56ry9jzsd2z0zffcysy01bh62cg13hi4swdhdvwmjcsb5gq97"; depends=[bayesplot coda ggplot2 LaplacesDemon logspline rstan]; }; - bnclassify = derive2 { name="bnclassify"; version="0.4.5"; sha256="1ik3n0g6gw7504ryg5skwygyc545150r297gii4mr2zj252lf069"; depends=[assertthat BH entropy matrixStats Rcpp rpart]; }; + bnclassify = derive2 { name="bnclassify"; version="0.4.6"; sha256="00akv7mg4mn7kk98r6ja3yx9h822b8hnv1k890i8kwsra3c2qgid"; depends=[assertthat BH entropy matrixStats Rcpp rpart]; }; bndovb = derive2 { name="bndovb"; version="1.1"; sha256="16mvkvwnx61jrvraagvxf56pvmf5klm8lnkqq4s5y2z92kd0clgp"; depends=[dplyr factormodel MASS nnet np pracma]; }; bnlearn = derive2 { name="bnlearn"; version="4.7"; sha256="05r80arqvcmnkw20gffrfc2ypnqf6628c8y3xr8pxw3wkfxdf79f"; depends=[]; }; bnma = derive2 { name="bnma"; version="1.4.0"; sha256="0wfz5faxgbci0n6kmgcazn0vjnsvn9l7lj4f63a3c0x6pb0yiir0"; depends=[coda ggplot2 igraph rjags]; }; @@ -6557,9 +6569,8 @@ in with self; { bookdownplus = derive2 { name="bookdownplus"; version="1.5.8"; sha256="1cdxz5c69cgdk7wxr0xwhzw361rpg7j8xjv9hjf1877qqmhxbrkd"; depends=[bookdown knitr magick xaringan]; }; boomer = derive2 { name="boomer"; version="0.1.0"; sha256="0nb58msk7ycim15ssjwig9i62x51ydnakq83jg6vcbqjg1a9anry"; depends=[crayon pryr rlang rstudioapi styler withr]; }; boostmtree = derive2 { name="boostmtree"; version="1.5.0"; sha256="18w5h8m6g4aszffyn0ixhzn2bgbrwrrcq2k54b70vbw00xqxmg1q"; depends=[nlme randomForestSRC]; }; - boostr = derive2 { name="boostr"; version="1.0.0"; sha256="123ag8m042i1dhd4i5pqayqxbkfdj4z0kq2fyhxfy92a7550gib2"; depends=[foreach iterators stringr]; }; boot = derive2 { name="boot"; version="1.3-28"; sha256="0cjafhqv1c1mrjjcasqr767vs96wjcc6am9r1icryr8l4zymhwcz"; depends=[]; }; - boot_heterogeneity = derive2 { name="boot.heterogeneity"; version="1.1.2"; sha256="0511vc6kbx3mijgknyzdc3jv2i1ay6wsc7660hd07xmvahqg8130"; depends=[HSAUR3 knitr metafor pbmcapply rmarkdown]; }; + boot_heterogeneity = derive2 { name="boot.heterogeneity"; version="1.1.5"; sha256="0g4zkvx8krqh54xvjh1a0ybwl3v5bg3l670ycgnps8kkw32w5p1f"; depends=[HSAUR3 knitr metafor pbmcapply rmarkdown]; }; boot_pval = derive2 { name="boot.pval"; version="0.3"; sha256="0pmp1wd12gzkpl2ank7yw7gd160aa5n07dxdy812vki6kjp3qd19"; depends=[boot car lme4 Rdpack survival]; }; bootComb = derive2 { name="bootComb"; version="1.0.2"; sha256="1vnkn1xa8qz58srgk1i5m3m3skghw5klvp0q53ab45a420j49spj"; depends=[]; }; bootES = derive2 { name="bootES"; version="1.2.1"; sha256="16b14bycy3ds09hsxnk738k2xq9qmwcy3kzdqd6rw9w4j7167kf0"; depends=[boot]; }; @@ -6572,7 +6583,7 @@ in with self; { bootUR = derive2 { name="bootUR"; version="0.3.0"; sha256="12r2kfr4nwlc734vbx793vx4qhg8hiv3s99hj8k6h0b0fvj1w911"; depends=[Rcpp RcppArmadillo RcppProgress urca]; }; bootcluster = derive2 { name="bootcluster"; version="0.2.5"; sha256="0jhq0f8a3lajhqksvxd3k703b50vzll43q9w4iaqv4ylsg9l6pyr"; depends=[cluster doParallel dplyr flexclust foreach fpc GGally ggplot2 gridExtra igraph intergraph mclust network plyr sna]; }; bootf2 = derive2 { name="bootf2"; version="0.4.1"; sha256="17wrl678x9mb5pny2vwrr6sdl2hsqr1nbjzsizp2q6l3w5m6s152"; depends=[ggplot2 MASS minpack_lm readxl]; }; - bootnet = derive2 { name="bootnet"; version="1.4.3"; sha256="0zmv6wibqkdhffs937xa1xjz6xn6wb4hajpdl36sfkmw3cqfc9sm"; depends=[abind BDgraph corpcor dplyr ggplot2 glasso graphicalVAR gtools huge igraph IsingFit IsingSampler lavaan Matrix mgm mvtnorm NetworkToolbox networktools pbapply psychTools qgraph relaimpo tidyr]; }; + bootnet = derive2 { name="bootnet"; version="1.5"; sha256="13pfmr259yikkb3y9438xz4bjn6kx5w5d2jhx441a00rvv1kb3hi"; depends=[abind corpcor dplyr ggplot2 gtools igraph IsingFit IsingSampler Matrix mgm mvtnorm NetworkToolbox networktools pbapply qgraph rlang snow tibble tidyr]; }; bootruin = derive2 { name="bootruin"; version="1.2-4"; sha256="1gbvh99snchipf13kjhymcx60s2kni23y7lv8lhzd3d402grp68h"; depends=[]; }; bootsPLS = derive2 { name="bootsPLS"; version="1.1.2"; sha256="19ikz3l0qds25hgcxvhsvqy6jyshcdvnxw6774ifl9ylngxvlfh0"; depends=[mixOmics]; }; bootspecdens = derive2 { name="bootspecdens"; version="3.0"; sha256="0hnxhfsc3ac4153lrjlxan8xi4sg1glwb5947ps6pkkyhixm0kc1"; depends=[MASS]; }; @@ -6612,7 +6623,7 @@ in with self; { brainR = derive2 { name="brainR"; version="1.6.0"; sha256="1l5rm6grslc6mivwh2fv3pznhy2cw16fz5695pmyfamzvsjggir1"; depends=[misc3d oro_nifti rgl]; }; brandwatchR = derive2 { name="brandwatchR"; version="0.3.0"; sha256="10bccsaswsq06wdrxqg71amzx5rabmgfi4n074y651r2c1pyy98w"; depends=[data_table httr jsonlite]; }; brant = derive2 { name="brant"; version="0.3-0"; sha256="0rcp0am4wjlkinvmv0n5bky84v31ds28v163p5mlp343cgma2b62"; depends=[MASS Matrix]; }; - bravo = derive2 { name="bravo"; version="2.0.1"; sha256="1q7xd30hdmrdzfbjpz8vdj8g6rgqaixcjfabs7afp3kccgv4k6bf"; depends=[Matrix Rcpp]; }; + bravo = derive2 { name="bravo"; version="2.1.1"; sha256="1ikfby3sbkbzk34kc2nsbxyqfdl9qw182rf9zj5zk6yi8s4zsbsq"; depends=[Matrix Rcpp]; }; brea = derive2 { name="brea"; version="0.2.0"; sha256="0mb043fdhxrg9gyf4g55ydjx37j20394nvd4d0fmiym98lccyi04"; depends=[]; }; breakDown = derive2 { name="breakDown"; version="0.2.1"; sha256="1jm9zmyfcnr9mjz7b30k34h47msvik9ngfysi6dc48gvrk41yk9q"; depends=[ggplot2]; }; breakage = derive2 { name="breakage"; version="1.1-1"; sha256="0zjazyz92criiimpz4wyd4hd8ccspvh3hhqpd4qkfdzdf9wp3kns"; depends=[Imap]; }; @@ -6640,10 +6651,10 @@ in with self; { brokenstick = derive2 { name="brokenstick"; version="1.1.0"; sha256="02n8fv84cfj32mg08ylpg19alf69kkpknpvd6mx86lclhaqa3cnf"; depends=[dplyr lme4 matrixsampling rlang tidyr]; }; brolgar = derive2 { name="brolgar"; version="0.1.2"; sha256="0xhv76z75zsrvcy606cv8qvz14w5g02gcs2744kv1kflaaics7dx"; depends=[dplyr fabletools ggplot2 glue magrittr purrr rlang tibble tidyr tsibble vctrs]; }; broman = derive2 { name="broman"; version="0.76"; sha256="1yjalfrfy1hvrcs3ky452mdg2ss8ikascj9yngp5fnfrrljcg9wg"; depends=[ggplot2]; }; - broom = derive2 { name="broom"; version="0.7.9"; sha256="1z65qyhkhkyalxhrvpsa7n8pickj9fjs8r4gzdvjp2rpggwramhx"; depends=[backports dplyr ellipsis generics glue purrr rlang stringr tibble tidyr]; }; + broom = derive2 { name="broom"; version="0.7.10"; sha256="0ks64xwkaqh5cinq8j56d89rn9kipm7cdipsgqmz9xxy7ajxb7qj"; depends=[backports dplyr ellipsis generics ggplot2 glue purrr rlang stringr tibble tidyr]; }; broom_helpers = derive2 { name="broom.helpers"; version="1.4.0"; sha256="0x9z9v4d4dyd1mip86z084b9mizvzwbc4swp676mf2r6g465qskz"; depends=[broom cli dplyr labelled lifecycle purrr rlang stringr tibble tidyr]; }; broom_mixed = derive2 { name="broom.mixed"; version="0.2.7"; sha256="1fh1vxi8n5y30mayk4aa1yis4c064fz5xyrg8m0rl8xgaxakhagz"; depends=[broom coda dplyr nlme purrr stringr tibble tidyr]; }; - broomExtra = derive2 { name="broomExtra"; version="4.2.3"; sha256="187qnfs6lz0ff9xr7zxfj2laac35jvq105c6cr9fjl82vw2i8np1"; depends=[broom broom_mixed dplyr magrittr parameters performance rlang tibble]; }; + broomExtra = derive2 { name="broomExtra"; version="4.3.0"; sha256="1f2xsq0r0m991y3p6639v16kjwm3im8yys7brzvgmsv04rg29rhq"; depends=[broom broom_mixed dplyr magrittr parameters performance rlang]; }; brotli = derive2 { name="brotli"; version="1.2"; sha256="07rgdgxh9bvn0qavpclxmkglwyl6ndqasxcs6j12if698dkn976b"; depends=[]; }; brr = derive2 { name="brr"; version="1.0.0"; sha256="050ivnqcaxiyypd1sxfpy6ianhzzmvs6c77ga40g3440cvfigkgw"; depends=[gsl hypergeo pander stringr SuppDists TeachingDemos]; }; brranching = derive2 { name="brranching"; version="0.7.0"; sha256="06jy3qhbr0v4m1j4j8a7fb7ic59sx4zhlsm1yb3g6rdwc00d67wj"; depends=[ape conditionz crul curl phylocomr phytools taxize]; }; @@ -6747,7 +6758,7 @@ in with self; { campfin = derive2 { name="campfin"; version="1.0.8"; sha256="06shr4p4g3cwxs1iszpvpk83k2mss6za68fqkv5pjiz44pc89v80"; depends=[dplyr fs ggplot2 glue httr lubridate magrittr purrr readr rlang scales stringdist stringr tibble]; }; camsRad = derive2 { name="camsRad"; version="0.3.0"; sha256="06gar6qan1ka01ngjvbpcv649yvfga697mplwn1x6qnfr4ngb7cs"; depends=[httr xml2]; }; camtrapR = derive2 { name="camtrapR"; version="2.0.3"; sha256="13zg8kx28il7rbyr2p3c1xdxx84b7shpcmgavzjqzh6wjm5bh5mh"; depends=[data_table overlap secr sp]; }; - cancensus = derive2 { name="cancensus"; version="0.4.5"; sha256="0bdngqwcf2x1dha3khafz7qyvbzxbhzzgpv44bybj6cd3jmg65lh"; depends=[digest dplyr httr jsonlite rlang]; }; + cancensus = derive2 { name="cancensus"; version="0.4.8"; sha256="0j4q00av0wssd0nwhgkdsyrcvicc4lial66ibfh5pyzih5i0dhpg"; depends=[digest dplyr httr jsonlite rlang]; }; cancerGI = derive2 { name="cancerGI"; version="1.0.0"; sha256="1chkcyf9m98gbn6b3vmb1baw7kii4g5vxvg2xfi7i6wwdn8sqr65"; depends=[igraph qvalue reshape2 survival systemfit]; }; cancerTiming = derive2 { name="cancerTiming"; version="3.1.8"; sha256="1sfi8q2f5ag7iak0sf9pmqncb89w3gnxdiwjwpivkwhr28ais4mq"; depends=[gplots LearnBayes]; }; candisc = derive2 { name="candisc"; version="0.8-6"; sha256="17bhh3jgaq5hrlwaapwpsgk7f8a3sg2cmrjd1hgfxxx0z30a6icn"; depends=[car heplots]; }; @@ -6799,7 +6810,7 @@ in with self; { casen = derive2 { name="casen"; version="0.1.4"; sha256="19f52vqrzqd8mmnaf39jmsm5mhydv74gpnb4rxr3n9w07ppb77c9"; depends=[dplyr glue haven janitor labelled magrittr purrr rlang srvyr survey tibble tidyr]; }; casino = derive2 { name="casino"; version="0.1.0"; sha256="07fphn46718gr1zm0xr43mwv7yk697xrc40lxxin315cf3gm0cka"; depends=[crayon dplyr ggplot2 magrittr purrr R6 tibble tidyr]; }; cassandRa = derive2 { name="cassandRa"; version="0.1.0"; sha256="0rwqzxbflxn1iyggm3mq6pkbl61mhk4vdwqwzlwrhrvvr2ib236r"; depends=[bipartite boot dplyr ggplot2 magrittr purrr reshape2 tidyr vegan]; }; - castor = derive2 { name="castor"; version="1.6.9"; sha256="01wk8qg938z8kffmdhwkjglv6i41s9z0s5248q4983m24qsx1hvl"; depends=[Matrix naturalsort nloptr Rcpp RSpectra]; }; + castor = derive2 { name="castor"; version="1.7.0"; sha256="1l5kds6g0dbnwlyjlpmy9jzdm6x5xm4qmagfy505i0g7l8065wfl"; depends=[Matrix naturalsort nloptr Rcpp RSpectra]; }; cat = derive2 { name="cat"; version="0.0-6.5"; sha256="1gv7chqp6kccipkrxjwhsa7yizizsmk4pj8672rgjmpfcc64pqfm"; depends=[]; }; cat_dt = derive2 { name="cat.dt"; version="0.3.1"; sha256="0qr3azaxs339kfiiyzasc46xz4rb37prdwvdmv0c40cvba6zvapf"; depends=[ggplot2 Matrix Rglpk]; }; cat2cat = derive2 { name="cat2cat"; version="0.2.1"; sha256="0hjx14g97dsdbk2fzficbinl04n5gs2ccr2c813q6xda28al5bam"; depends=[assertthat caret data_table dplyr MASS progress randomForest rlang tidyr]; }; @@ -6829,6 +6840,7 @@ in with self; { causact = derive2 { name="causact"; version="0.4.0"; sha256="1mghawijsr0rpyy9pzvad11bf4qgfva7rb2pdkidm675a123sgc7"; depends=[coda cowplot DiagrammeR dplyr forcats ggplot2 greta htmlwidgets igraph magrittr purrr rlang rstudioapi stringr tidyr]; }; causal_decomp = derive2 { name="causal.decomp"; version="0.0.1"; sha256="08ccdzb5ssqhzkr3z3b8vz762mwflh33s6rrmsb9srvkk661lly2"; depends=[CBPS MASS nnet PSweight spelling SuppDists]; }; causalCmprsk = derive2 { name="causalCmprsk"; version="1.0.3"; sha256="0s1jshh30jmkk2cx29dfhibmfzbpaqk7i0f8wayb204r73a58f8a"; depends=[data_table doParallel foreach inline purrr survival]; }; + causalPAF = derive2 { name="causalPAF"; version="1.2.4"; sha256="1ild77iiibzqbyxk3j20dydwmbrjf66r7qhd2ip2b3x9qbqq5wmh"; depends=[checkmate dagitty dplyr forestplot ggdag ggplot2 gridExtra magrittr MASS reshape2 rlist]; }; causaldata = derive2 { name="causaldata"; version="0.1.1"; sha256="0d9c6lc053xxw3jpjwcy2cmkckhwfg5q67nf620mr5n4p173yxw0"; depends=[tibble]; }; causaldrf = derive2 { name="causaldrf"; version="0.3"; sha256="16gqx8b8alwm8a4lm69qamnqr3bg2qbz0d6q4lyqyrwsk12grid6"; depends=[mgcv survey]; }; causaleffect = derive2 { name="causaleffect"; version="1.3.13"; sha256="1b238cv24vf91wwgfzb4wdrxx2dywhhsd1hlr7ps0mj4dv8li2xk"; depends=[igraph]; }; @@ -6856,7 +6868,7 @@ in with self; { ccdf = derive2 { name="ccdf"; version="1.1.4"; sha256="1kab0qa731w5hhnpdqhf5jbyyq66xjx1xyxnkzwc0qy75cgyc03i"; depends=[CompQuadForm cowplot doParallel foreach ggplot2 matrixStats pbapply randomForest RcppNumerical rpart statmod survey viridisLite]; }; ccdrAlgorithm = derive2 { name="ccdrAlgorithm"; version="0.0.5"; sha256="171k70p4qyasr385ma3cvcga2b4nbz2dfry78wqx5yb1aa6wwcyc"; depends=[Rcpp sparsebnUtils]; }; cchs = derive2 { name="cchs"; version="0.4.2"; sha256="18zk50g7rw8cb09fczpcdgzjl1b06rgf6lwy99sg7nq4scnzgzm8"; depends=[survival]; }; - cchsflow = derive2 { name="cchsflow"; version="1.8.2"; sha256="16vdjg68srix5g62x1chgjdr8pp8ypvn3kd64n6jnfyhxhia3jw6"; depends=[dplyr haven magrittr sjlabelled stringr]; }; + cchsflow = derive2 { name="cchsflow"; version="2.0.0"; sha256="1r8m072f6idmmirwgr71llcka6f254jzhcs53yx6fxzncp5l2g6n"; depends=[dplyr haven magrittr sjlabelled stringr]; }; ccid = derive2 { name="ccid"; version="1.0.0"; sha256="1wzz8bydcy9x7rnrvvircd8lkrgx0p7x2q5hihxslz3siy1jjgaj"; depends=[gdata GeneNet hdbinseg IDetect]; }; cclust = derive2 { name="cclust"; version="0.6-22"; sha256="1wyiwq16zyvc0vqbap1y4zfkvlgzwzjrx4vmrjhzlqxci8jryjbs"; depends=[]; }; ccmEstimator = derive2 { name="ccmEstimator"; version="1.0.0"; sha256="1z53i7d2x1g93zskcyj93hxjyrvc9sjqmq887zaflwf22ikxvm6p"; depends=[]; }; @@ -6919,6 +6931,7 @@ in with self; { cetcolor = derive2 { name="cetcolor"; version="0.2.0"; sha256="0kygdcr9ldanr0z4qpygwh0padki7s2ad0j6myky601g4228z79q"; depends=[]; }; ceterisParibus = derive2 { name="ceterisParibus"; version="0.4.2"; sha256="0hxklydsqb69y5sv2hanp5ja9k0063swf5si1j6gcj15lp7phpif"; depends=[DALEX ggplot2 gower knitr]; }; cfa = derive2 { name="cfa"; version="0.10-0"; sha256="12z58y4ls9m58wpj1xa4ir2p2apzxaskps05sxy2946m24i71zfk"; depends=[]; }; + cfbfastR = derive2 { name="cfbfastR"; version="1.6.4"; sha256="0harc4b3qxdb2gy01p6si7na8lrqjidw6ysndj12snyhdrx2id1m"; depends=[cli dplyr furrr future glue httr janitor jsonlite magrittr mgcv nnet progressr purrr rlang stringi stringr tibble tidyr xgboost]; }; cfda = derive2 { name="cfda"; version="0.9.9"; sha256="07k531vp2chsrkw5d0iws3jg23yz0gni0bjn03kr6irw89r4py9p"; depends=[diagram fda ggplot2 mgcv msm pbapply]; }; cfdecomp = derive2 { name="cfdecomp"; version="0.4.0"; sha256="0g61gpihk5kbbrqzn15fqjv3bawsq1vq3sdssbzs5j96afmf2aq8"; depends=[]; }; cffdrs = derive2 { name="cffdrs"; version="1.8.18"; sha256="15bl1sfm2yz897b5w0x0kvyf2z3rx32n436gsnsx5gd32v5v18w1"; depends=[data_table doParallel foreach geosphere raster rgdal]; }; @@ -6940,7 +6953,7 @@ in with self; { cgwtools = derive2 { name="cgwtools"; version="3.3"; sha256="1dl9ghwfzjrl5pd6izy4c5qyfq2s8ywnqh97y1bhwmcw2qwb4ci6"; depends=[gmp]; }; ch = derive2 { name="ch"; version="0.1.0.2"; sha256="1ryh2xr1ix4qznq1svi4gdr4qy6v6rg597z2zl6zw32s2xq6ssx6"; depends=[clipr crayon ggplot2 magrittr MASS polynom pracma Ryacas]; }; chameleon = derive2 { name="chameleon"; version="0.2-0"; sha256="1q631l40gdknbv7dzvzgfdi0mx7rs4hlfkimhvf6li6ajmmh3sa5"; depends=[clue ggplot2 umap]; }; - chandwich = derive2 { name="chandwich"; version="1.1.4"; sha256="0znk0nmh77j6a6wwxqlv8h155pihc9g1v3w7fgsrwna0pkjqmhn4"; depends=[numDeriv]; }; + chandwich = derive2 { name="chandwich"; version="1.1.5"; sha256="1i3gg3ib4j33i5f3a6x9k2g8d5ccbdmv2pb2bdhiwwsjy8bfmsvq"; depends=[numDeriv]; }; changedetection = derive2 { name="changedetection"; version="0.2.0"; sha256="0j8x7qyna7qgjhx56yxav1g3wj3r47zvx2hivybsjis2gqbl82hr"; depends=[glmnet L1pack Rdpack]; }; changepoint = derive2 { name="changepoint"; version="2.2.2"; sha256="1jbki95pck10phpxna0b4i79hhl912zqi5ii9mjqb673y64dszkj"; depends=[zoo]; }; changepoint_geo = derive2 { name="changepoint.geo"; version="1.0.1"; sha256="1jlixdrq97n6bh09jq3hamlwkqfqbmqs14kr8swx20f8fvfr3fj2"; depends=[changepoint changepoint_np ggplot2 Rdpack]; }; @@ -7070,7 +7083,7 @@ in with self; { clespr = derive2 { name="clespr"; version="1.1.2"; sha256="1993kd70w48a110im47vcpll0c6nfrm7m33r6l8rzgwnpsmcls8g"; depends=[AER clordr doParallel foreach magic MASS pbivnorm survival]; }; clevr = derive2 { name="clevr"; version="0.1.1"; sha256="077qhqfzcy1ciar70df7q98ms003b9mnqgji1nxkx5ncw9hdkzd4"; depends=[BH Matrix Rcpp]; }; clhs = derive2 { name="clhs"; version="0.9.0"; sha256="04hd0p51j15294fv1a9qx61p5yfmh8hcx784v3x1s0kx7km34saz"; depends=[cluster ggplot2 plyr raster Rcpp RcppArmadillo reshape2 sf sp]; }; - cli = derive2 { name="cli"; version="3.0.1"; sha256="1zdld2cr83k4v7yrwa2csvcafwslwr610vk70mv1a3knrnv2b6nq"; depends=[glue]; }; + cli = derive2 { name="cli"; version="3.1.0"; sha256="04ff3bgsahi736s8l6a26zlwwil8jw4shx7bb56ah1pp1f1n22n7"; depends=[glue]; }; cliapp = derive2 { name="cliapp"; version="0.1.1"; sha256="0v62lbcsja0xmlpqcps370n5c7bk4j2n8pwh9xyif5s4wpf82qz1"; depends=[cli crayon fansi glue prettycode progress R6 selectr withr xml2]; }; clickR = derive2 { name="clickR"; version="0.8.0"; sha256="0j8hl5cgdm4j4h3x3h7fp6w3xr8p350icvmf123z56f6fkj6c22z"; depends=[beeswarm stringdist]; }; clickstream = derive2 { name="clickstream"; version="1.3.1"; sha256="0z1yy5lr9m5x9ybimjy3f6kn490abdi038xi0qw7ny80f1ca6ry7"; depends=[arules ClickClust data_table ggplot2 igraph linprog MASS plyr reshape2 Rsolnp]; }; @@ -7099,7 +7112,7 @@ in with self; { clipp = derive2 { name="clipp"; version="1.1.0"; sha256="1mh3rhkjm13yp1890d7zy2qn50nv177z74kr4pgnp5i7vlr8zqr6"; depends=[]; }; clipr = derive2 { name="clipr"; version="0.7.1"; sha256="1ywa4kipwc2d7na6iiz3wzdah99h6aynnh74yxl3nzl40xxlgbgz"; depends=[]; }; clisymbols = derive2 { name="clisymbols"; version="1.2.0"; sha256="1q7gi2zmykhzas9v8fdnbpdq7pzdcpbhim1yxvd2062l777g4j86"; depends=[]; }; - clock = derive2 { name="clock"; version="0.4.1"; sha256="18bjcsb4kdxk8gmx2f6s66azrhspa0sv71sqim4998mw5xzr2c34"; depends=[cpp11 ellipsis rlang tzdb vctrs]; }; + clock = derive2 { name="clock"; version="0.5.0"; sha256="0d2mmsm1aainmk3896fb8jidyg76vczxjamj4jd8zb47frn1qz95"; depends=[cpp11 ellipsis rlang tzdb vctrs]; }; clockify = derive2 { name="clockify"; version="0.0.9"; sha256="1m8jpafraycb85g7z4nna3isjyd5vfacbrxwpgn9745rbkg5iwly"; depends=[anytime dplyr httr janitor logger lubridate purrr tibble tidyr]; }; clogitL1 = derive2 { name="clogitL1"; version="1.5"; sha256="0y6a6s5l98i0vrj66biwr17g6pzpmm5kfz4c57af0yhv7c4s4was"; depends=[Rcpp]; }; clogitLasso = derive2 { name="clogitLasso"; version="1.1"; sha256="1j2kscd6d1jham6yqx5rp78x5vfj2faylkxkbcjaqbynlnqbbxd0"; depends=[foreach lassoshooting]; }; @@ -7109,7 +7122,7 @@ in with self; { cloudml = derive2 { name="cloudml"; version="0.6.1"; sha256="1j15q9yb2rc4fbjxfh21fiq6is8dnb8nfyi7g8iazgfwb3p9ahpx"; depends=[config jsonlite packrat processx rprojroot rstudioapi tfruns withr yaml]; }; cloudos = derive2 { name="cloudos"; version="0.2.0"; sha256="0n0ldg81k6i0wqnzzimkr7pyi2q705g9hia4ckf1cp2sskgrfvj0"; depends=[dplyr ggplot2 httr jsonlite rappdirs tibble]; }; cloudstoR = derive2 { name="cloudstoR"; version="0.1.0"; sha256="0bcdm3qp1bcgb7wksvjisd7m629cqbdvf8779gmlqi3w5daw4lpq"; depends=[cli curl getPass httr keyring rio XML]; }; - clpAPI = derive2 { name="clpAPI"; version="1.3.0"; sha256="1ivrvipnvnqf1mnvvqnv2jgf69i0h84f46n8x41bx89lag0161bv"; depends=[]; }; + clpAPI = derive2 { name="clpAPI"; version="1.3.1"; sha256="0hjpdbmwaww5fznqkkg9jli5y8f8zyd7crn0imdb0xxypmnp7zgf"; depends=[]; }; clr = derive2 { name="clr"; version="0.1.2"; sha256="088ks9lrhlyvg3yvlfmb0091yp6qp5bzg9h5r6ryv3bk6y56sajx"; depends=[dplyr lubridate magrittr]; }; clttools = derive2 { name="clttools"; version="1.3"; sha256="0va9k1b4xsb2sgpxzvid6sa8m6b8i3r4kgghclmb78nnrs480cwi"; depends=[]; }; clubSandwich = derive2 { name="clubSandwich"; version="0.5.3"; sha256="0jazgka18bb5n58d5sn94q7rc9sac82qrpl2i5b4rkx9q2pb39cn"; depends=[sandwich]; }; @@ -7161,6 +7174,7 @@ in with self; { cmprsk = derive2 { name="cmprsk"; version="2.2-10"; sha256="1xnx2zanw548prxsw2zw5cddkkg6kj97jgyzw67achq5mnsvfbg8"; depends=[survival]; }; cmprskQR = derive2 { name="cmprskQR"; version="0.9.2"; sha256="1b3di5fsgglriv00fxydpc4p8lh0xcgi6jc04awq2vmp6s8kvjmw"; depends=[quantreg survival]; }; cmprskcoxmsm = derive2 { name="cmprskcoxmsm"; version="0.2.1"; sha256="1q17nzvqv0c8p2fs34fqszllp6g7kdbsmw4frlxpbjr3gwgd8rlk"; depends=[ggplot2 sandwich survival twang]; }; + cmpsR = derive2 { name="cmpsR"; version="0.1.0"; sha256="0gxngq2awpignkdwi5cn6gxwk0q2fi3zy55jg5mlkihz2sq9iyyg"; depends=[assertthat dplyr ggplot2 rlang]; }; cmrutils = derive2 { name="cmrutils"; version="1.3.1"; sha256="0nrq84bkd23lvvg8ls2smkjcnfnydhbcni3n6s8w0579i9xga8dv"; depends=[chron]; }; cms = derive2 { name="cms"; version="0.1.0"; sha256="0m3cxvw40nyr1jpdkhg5nbms16hkzj0mrx5nl39x1l42cx2hcjrl"; depends=[assertthat dplyr magrittr readr rlang rvest xml2]; }; cmsaf = derive2 { name="cmsaf"; version="3.3.0"; sha256="0k4bdimykhc224m81mvr4ld5bffixgxdwg3qk5gdx58b01a2f0xg"; depends=[cmsafops cmsafvis colorspace colourpicker data_table fields FNN mapproj maps maptools ncdf4 R_utils raster rworldxtra SearchTrees shiny shinyFiles shinyjs shinythemes sp xml2]; }; @@ -7225,6 +7239,7 @@ in with self; { collUtils = derive2 { name="collUtils"; version="1.0.5"; sha256="0gbk3lrb2lwq2ixrpcngng6qz6axjb4iyqy5606x1zmjm71c060p"; depends=[Rcpp rJava]; }; collapse = derive2 { name="collapse"; version="1.6.5"; sha256="0ijsp4azblyvgryx94ymfzcc6d5f3g794z8yv3amxsxmc8x2l8qy"; depends=[Rcpp]; }; collapsibleTree = derive2 { name="collapsibleTree"; version="0.1.7"; sha256="0b65pbp1wnpsrayqi630ds4r98jvcvynnlp6wxdqrnnr9nzw5343"; depends=[data_tree htmlwidgets]; }; + collateral = derive2 { name="collateral"; version="0.5.2"; sha256="1wnzgpayjsqnqry0cdmkijyjkkjhbc8hxwlkx7aj9qwaiz7wiibr"; depends=[crayon pillar purrr]; }; collectArgs = derive2 { name="collectArgs"; version="0.4.0"; sha256="0fz5w1xsxiddzrwahrg50px4igyhd4plq655jaix6grancs7kvix"; depends=[magrittr]; }; collections = derive2 { name="collections"; version="0.3.5"; sha256="053ig88pva78wxxwya3v7cz853k563dkpgxrf2xvd0l0d9fanxmz"; depends=[]; }; collidr = derive2 { name="collidr"; version="0.1.3"; sha256="18ki8mwf5ihbgfbhdbbk9ljs44js3rqgl1g6g3ch6dynz61sr6hn"; depends=[dplyr jsonlite stringr]; }; @@ -7301,13 +7316,13 @@ in with self; { composits = derive2 { name="composits"; version="0.1.0"; sha256="1j2bbl0p7dhlf18n1164qdbch2qa5nzk66qh4xlrrhr36zip88y4"; depends=[anomalize dobin dplyr fastICA forecast ggplot2 gridExtra ICS kableExtra otsad pracma rlang tibble tidyr tsoutliers]; }; compound_Cox = derive2 { name="compound.Cox"; version="3.20"; sha256="18fgc58jqrjls1rkzrpy338m3yyxaqkv7dfv31a2sf551ynajcfy"; depends=[numDeriv survival]; }; comprehenr = derive2 { name="comprehenr"; version="0.6.10"; sha256="1wlc06swm45nxg9hgik3wj832sr074i3p0j5kxm0i2r74klfy22w"; depends=[]; }; - compstatr = derive2 { name="compstatr"; version="0.2.1"; sha256="0pg8yacfb7jvg9xr0gmis8a4g339isd77h6wr8dd6w900q47xac0"; depends=[dplyr fs httr janitor lubridate purrr readr rlang rvest sf stringr tibble tidyr xml2]; }; compute_es = derive2 { name="compute.es"; version="0.2-5"; sha256="00133s3l3g70xrfnxgxhvbjr8izvaj9h0c73iaiyjmlgj84x69m8"; depends=[]; }; comsimitv = derive2 { name="comsimitv"; version="0.1.5"; sha256="0g1b14bx0dgy7y24gxlj0r2sgiild14cvr1zmf37df7g3bswn112"; depends=[MASS vegan]; }; comtradr = derive2 { name="comtradr"; version="0.2.2"; sha256="177gnmgwqns65z5y9nw4xp8qmw5z70454zb54jw1879xrgfsrciz"; depends=[httr jsonlite magrittr purrr]; }; con2aqi = derive2 { name="con2aqi"; version="0.1.0"; sha256="1gdd1y6xg26fz199hvryzsnp16qbsz13chqqxyxnkgrai1l72mhf"; depends=[]; }; con2lki = derive2 { name="con2lki"; version="0.1.0"; sha256="005bk3y7il94h7zlkdjlibm1zm9yplbbzlybdjxmckh67sr6d03x"; depends=[]; }; conStruct = derive2 { name="conStruct"; version="1.0.4"; sha256="1klhzsxrkbz16dnm3r2qxyq2z02zqrps9kij2jy6241ni9qmnn2f"; depends=[BH caroline doParallel foreach gtools Rcpp RcppEigen rstan rstantools StanHeaders]; }; + conText = derive2 { name="conText"; version="1.0.0"; sha256="0xf2vy3g7myx3b85vcs7h9plqyy8yhxa1cnldi1jn3x4cmpq5f04"; depends=[dplyr fastDummies ggplot2 Matrix quanteda reshape2 stringr text2vec]; }; concatenate = derive2 { name="concatenate"; version="1.0.0"; sha256="1kvsw7vwa3hn97ff7r6z21h5ajs74azwv2dk4pzgyaasnbp778hw"; depends=[]; }; concatipede = derive2 { name="concatipede"; version="1.0.1"; sha256="1cmc0pcy9di1bxzj4kgbnvv1avd7xd6jzk43kni7fc5fkcq2jj3x"; depends=[ape dplyr igraph magrittr qualV readxl stringdist stringr tibble writexl]; }; concaveman = derive2 { name="concaveman"; version="1.1.0"; sha256="0b3fx3y60ibb73pqx5591jq1n86242qajfxbz3vzz6rxxspddlcz"; depends=[dplyr jsonlite magrittr sf V8]; }; @@ -7353,7 +7368,7 @@ in with self; { conogive = derive2 { name="conogive"; version="1.0.0"; sha256="0a8v7v0fds0psfnbx9x45way8z1f1xn2ncgbrn5rb6fjq0a1zs4x"; depends=[assertthat checkmate mvtnorm psych]; }; conos = derive2 { name="conos"; version="1.4.3"; sha256="15gbaa2lq256fgd4wgvf6hkv0k9w45764kya55hcr1z6wqx53i7z"; depends=[abind ComplexHeatmap cowplot dendextend dplyr ggplot2 ggrepel gridExtra igraph irlba leidenAlg magrittr Matrix Matrix_utils N2R R6 Rcpp RcppArmadillo RcppEigen RcppProgress reshape2 rlang Rtsne sccore]; }; conover_test = derive2 { name="conover.test"; version="1.1.5"; sha256="0f1p10klidk1xic1wd48j9rjh2fb3z6pfjx4y021lglx1w3av68k"; depends=[]; }; - conquer = derive2 { name="conquer"; version="1.0.2"; sha256="1zvlsrbmrij011mcdi3qngs1al2lhrdiyknxnk0w1zhzrra62bsl"; depends=[Matrix matrixStats Rcpp RcppArmadillo]; }; + conquer = derive2 { name="conquer"; version="1.2.0"; sha256="1y87ky1fzkc9bgw31sk2zzxipiyqwca6my7phwdv60lfclii4i8h"; depends=[caret Matrix matrixStats Rcpp RcppArmadillo]; }; conquestr = derive2 { name="conquestr"; version="0.8.5"; sha256="1xh09a379g1msib5fvf72llvf2gwqb7ciacw7j7iqrkb2ddpaglk"; depends=[ggplot2 ggrepel Rcpp reshape rlang stringr]; }; conserveR = derive2 { name="conserveR"; version="1.0.4"; sha256="05b1pqgbd9sh4lyg9zqjfg4019dqp8xj3k1w31qqdld8m3g5lrd6"; depends=[cowplot GGally ggplot2 ggrepel magrittr network rlang scales sna]; }; consort = derive2 { name="consort"; version="0.2.0"; sha256="12r01p3kszybp8snb6bqhp59w2rzk8wc1jrd2rd1fgvrd134s7ph"; depends=[Gmisc]; }; @@ -7442,7 +7457,7 @@ in with self; { corrsieve = derive2 { name="corrsieve"; version="1.6-8"; sha256="0ak3j9khcwv5rxbicck2sr260wpmd3xj254y7pdavx2fk0b72yxs"; depends=[]; }; corset = derive2 { name="corset"; version="0.1-4"; sha256="0ladyqvkys4cldvbhkii9jwn1k5p1ym2g5bgdlz1hq1sv30ixn2f"; depends=[]; }; cort = derive2 { name="cort"; version="0.3.2"; sha256="1iayvgwjmpmb96w5841jxhwivca7s4v5bpsdy0lrbk121saqq5z1"; depends=[furrr nloptr osqp purrr Rcpp Rdpack]; }; - corto = derive2 { name="corto"; version="1.1.9"; sha256="122pvm2q32snicjha5q4is4wm5id63zhmzb064s3dbnml7f51ql2"; depends=[dplyr gplots knitr pbapply plotrix rmarkdown]; }; + corto = derive2 { name="corto"; version="1.1.10"; sha256="1vddp42klrji8qfccdrfwppk657aa46crs65mvbpcj9wss7zj2ng"; depends=[dplyr gplots knitr pbapply plotrix rmarkdown]; }; corx = derive2 { name="corx"; version="1.0.6.1"; sha256="179fxjagbq33549zyk234kz9ajbifl7qpmdy0lrw9vzjc8aqbycf"; depends=[clipr crayon ggcorrplot ggplot2 ggpubr glue magrittr moments ppcor psych tidyselect]; }; cosa = derive2 { name="cosa"; version="2.0.0"; sha256="1ra1m75ay829xlhjax82px4ffflnfgh2mrmzzj4i8ml545d9hmgr"; depends=[msm nloptr]; }; cosinor = derive2 { name="cosinor"; version="1.1"; sha256="02nnqg51vq48lzk667cyarnmhcf5mifnsdij7dlgqvz2k4fdq4pl"; depends=[ggplot2 shiny]; }; @@ -7517,6 +7532,7 @@ in with self; { cpr = derive2 { name="cpr"; version="0.2.3"; sha256="1a2lza1bw74xzrs17a9gr9mnpvnnrykhwd73yqi63wp3k4sm42rb"; depends=[dplyr ggplot2 lazyeval lme4 magrittr plot3D Rcpp RcppArmadillo rgl tibble tidyr]; }; cprobit = derive2 { name="cprobit"; version="1.0.2"; sha256="16fnndpkd226paahmadsddakj4yhybw7lp3csr73fwv78zfl2fj9"; depends=[car ggplot2 gridExtra nortest]; }; cprr = derive2 { name="cprr"; version="0.2.0"; sha256="049xnma0rdnya7zp05iraq15nwjgmdmli9g7xxprab822047vld7"; depends=[]; }; + cpsR = derive2 { name="cpsR"; version="0.4.4"; sha256="1krwmqlqqyn1a2dzy7lam1w4vzhqka3jjibysymy829clbj0vznn"; depends=[httr jsonlite tibble]; }; cpss = derive2 { name="cpss"; version="0.0.2"; sha256="1a6nphzf9y1p1ic51f0zll6g3j3flr7szrvzac1w4a023fj7301r"; depends=[dplyr ggplot2 gridExtra magrittr mvtnorm Rcpp RcppArmadillo Rfast rlang tibble tidyr]; }; cpsurvsim = derive2 { name="cpsurvsim"; version="1.2.0"; sha256="1fn88cqryji1syzhnx726m5svxnrlyynxk4jhp5ny8g3knai6nnk"; depends=[Hmisc knitr plyr]; }; cpsvote = derive2 { name="cpsvote"; version="0.1.0"; sha256="0nmg79isqwvxyg7zkfbshndfjb2fnc2ffg32hxvjvsy714lpljf6"; depends=[dplyr forcats magrittr readr rlang stringr]; }; @@ -7536,7 +7552,7 @@ in with self; { crantastic = derive2 { name="crantastic"; version="0.1"; sha256="0y2w9g100llnyw2qwjrib17k2r2q9yws77mf6999c93r8ygzn4f5"; depends=[]; }; crassmat = derive2 { name="crassmat"; version="0.0.6"; sha256="1c4ii34vh8y5b3z2maby4cafb3n2m9bnxv3762cy0z12mbg7zk1s"; depends=[svMisc]; }; crawl = derive2 { name="crawl"; version="2.2.1"; sha256="18mr7vp72jj5msj9mbq45jy3f6qhn45azsmkq07i2d30gwdj0c3a"; depends=[dplyr gdistance lubridate magrittr mvtnorm purrr raster Rcpp RcppArmadillo rmapshaper sf shiny sp tibble]; }; - crayon = derive2 { name="crayon"; version="1.4.1"; sha256="1ir963s6zk9l32fw257y54p7898cd7z7yazkn9h6j2cdfhpf9dh8"; depends=[]; }; + crayon = derive2 { name="crayon"; version="1.4.2"; sha256="0mxq87qsvz5znfncrb6yjchzv6iwpn9lr386i02y6xiycizkjd7f"; depends=[]; }; crch = derive2 { name="crch"; version="1.0-4"; sha256="18qjvh1lkw1f6rrhnb21f30xxrcq8whbs3x1jgkw6q14rf1483ri"; depends=[Formula ordinal sandwich scoringRules]; }; crctStepdown = derive2 { name="crctStepdown"; version="0.1"; sha256="07y4drz76nqk2lvk2600w3s20qx71xddlxqc8zrw3bh02pgdnpy7"; depends=[fastglm ggplot2 ggpubr lme4 Rcpp RcppArmadillo rlang stringr]; }; credentials = derive2 { name="credentials"; version="1.3.1"; sha256="0q3s1bibwvw1p541k8a5cjx4dj1iabl4crg61fgjxkniclxag5c7"; depends=[askpass curl jsonlite openssl sys]; }; @@ -7737,7 +7753,7 @@ in with self; { dampack = derive2 { name="dampack"; version="1.0.1"; sha256="0mh3x0xgcipbd9341x3sfapysrd9m8aaakc1f53vwjj31c8vayqc"; depends=[dplyr ellipse ggplot2 ggrepel mgcv reshape2 scales stringr triangle truncnorm]; }; damr = derive2 { name="damr"; version="0.3.7"; sha256="12vr630m2az8xb8wndk8cyh7r8mwg3lvr7i3fcgqqxcq9rsgqm4r"; depends=[behavr data_table readr]; }; dams = derive2 { name="dams"; version="0.3.0"; sha256="1jlx1b4cir1vwq75jnmk0pc6j95syfpi0hlnkx82g7pwfxwrdrib"; depends=[crul fauxpas janitor readxl]; }; - dang = derive2 { name="dang"; version="0.0.14"; sha256="041qb5babsx1wk1k0sfssy9rkf03ij6g9f8vbx7wn3a82l26f02h"; depends=[tidyCpp]; }; + dang = derive2 { name="dang"; version="0.0.15"; sha256="0zy72rlviisjb3syvj2fq9zliwk02m33kjd7h9q7n3xq3876bi4w"; depends=[tidyCpp]; }; dani = derive2 { name="dani"; version="0.1-1"; sha256="0ff0hcb5r8k6m6kv1zhjrpvl7gr1al3q0zlk4yjj89qd2j5byqp8"; depends=[Epi]; }; dann = derive2 { name="dann"; version="0.2.2"; sha256="115mc2mrmriyp24i8xgr58bjfgz6rzccl7s4akzp8rq5vhca707y"; depends=[fpc ggplot2 MASS purrr Rcpp RcppArmadillo rlang stringr tibble]; }; dapr = derive2 { name="dapr"; version="0.0.3"; sha256="136chxijyxrl5sbiggxf56zga26zqds647z1z2igwn5mdff1wxyb"; depends=[]; }; @@ -7761,7 +7777,6 @@ in with self; { dataMaid = derive2 { name="dataMaid"; version="1.4.1"; sha256="06jywq3llwafjnpklqimra456crdi752zxci6z1w0v7p8blf4vjw"; depends=[ggplot2 gridExtra haven htmltools magrittr pander rmarkdown robustbase stringi whoami]; }; dataMeta = derive2 { name="dataMeta"; version="0.1.1"; sha256="13xxayqxbps07h0xr5b7sb7q30gy5zm7jzzaq4k20fskkjrzhzcm"; depends=[dplyr]; }; dataPreparation = derive2 { name="dataPreparation"; version="1.0.2"; sha256="01ns6qrqr3pm9qfzc2lky0nqcnyn7adg3pdjf461kqhb2pvzcimv"; depends=[data_table lubridate Matrix progress stringr]; }; - dataReporter = derive2 { name="dataReporter"; version="1.0.0"; sha256="12rwjd46h35cydvfx5qhb4rssqpm94b628zr06gy9nhwydnajn5x"; depends=[ggplot2 gridExtra haven htmltools magrittr pander rmarkdown robustbase stringi whoami]; }; dataRetrieval = derive2 { name="dataRetrieval"; version="2.7.10"; sha256="0lmd2j9inc29s2xk09gk7rbypgcqzpb2vmnnbmbg1liw96jsz5wl"; depends=[curl httr jsonlite lubridate readr xml2]; }; datacleanr = derive2 { name="datacleanr"; version="1.0.1"; sha256="1kvlnvh2s8csng9q1l5bgc6aw7ax88dfl0iwbi4r8gc76swcbywm"; depends=[clipr dplyr DT formatR fs glue htmltools htmlwidgets lubridate magrittr plotly purrr RColorBrewer rlang rstudioapi shiny shinyFiles shinyWidgets summarytools]; }; datadigest = derive2 { name="datadigest"; version="1.0.2"; sha256="1v4nwflrgjhwkrdlrjnqyq1spv1jkgxn1kmapml0zrvnvwf0r1a1"; depends=[haven Hmisc htmltools htmlwidgets jsonlite miniUI shiny tibble]; }; @@ -7794,7 +7809,7 @@ in with self; { datastructures = derive2 { name="datastructures"; version="0.2.9"; sha256="0prw24iy1af02g1nzw588dv085bdnl6pzvizpxspmwzj6vrfbaav"; depends=[BH purrr Rcpp]; }; dataverse = derive2 { name="dataverse"; version="0.3.9"; sha256="10kdqav21j5f18jgf754d1wvlx1j61xs4kj31jwj48nkwr38719x"; depends=[checkmate httr jsonlite readr xml2]; }; datawizard = derive2 { name="datawizard"; version="0.2.1"; sha256="062phzfcvn79npn4s58gz1m5ignyvr4q2zlqnyxla4p7l760djl9"; depends=[insight]; }; - datazoom_amazonia = derive2 { name="datazoom.amazonia"; version="0.1.0"; sha256="06b294r5p1brj58imlf8hr0c004hfnb6l1sq7ssl2l2qr1f3r3cw"; depends=[data_table dplyr geobr googledrive Hmisc janitor labelled lubridate magrittr purrr RCurl readr readxl sf sidrar stringi stringr tibble tidyr XML]; }; + datazoom_amazonia = derive2 { name="datazoom.amazonia"; version="0.2.0"; sha256="0l24blbscai47rj9s8a0znd5q4mayddp639107r8dib466ykrz3g"; depends=[data_table dplyr geobr googledrive Hmisc janitor labelled lubridate magrittr purrr RCurl readr readxl sf sidrar stringi stringr tibble tidyr XML]; }; date = derive2 { name="date"; version="1.2-39"; sha256="0mwp1619rxqyyyyxk224fh0x6g4rgyvr97q0kj076cxp71b97cdm"; depends=[]; }; daterangepicker = derive2 { name="daterangepicker"; version="0.1.0"; sha256="1605ch84ad3nmmad0yy3id0izv0nz536lxwib6rkdkjik5761gqk"; depends=[htmltools jsonify shiny]; }; datetime = derive2 { name="datetime"; version="0.1.4"; sha256="0nn1yxknsn3crmwbkws5kvfjhd65dw0fkfbg67gba0dyaqp1jg37"; depends=[]; }; @@ -7816,7 +7831,7 @@ in with self; { dbarts = derive2 { name="dbarts"; version="0.9-20"; sha256="0ap9lmkx2z4fgc5b9kws6pgvshkr9ngr1z1qgmivf698h6ayfx8x"; depends=[]; }; dbcsp = derive2 { name="dbcsp"; version="0.0.1.0"; sha256="08y111ivy5f8jgmlsmf52vxxc64j2z4lijvdx1bx6a90vcvlqc51"; depends=[caret geigen ggplot2 MASS Matrix parallelDist plyr TSdist]; }; dbd = derive2 { name="dbd"; version="0.0-22"; sha256="13qdm0y5dvc107xnv6663gbvmkw77150r073lp1jppf3gs8s587b"; depends=[]; }; - dbflobr = derive2 { name="dbflobr"; version="0.1.0"; sha256="0sh14lf6qnj3z4lwkw27vv1s57jf5lfmw9lmz0hvd6nbfgmcr9rg"; depends=[chk clisymbols crayon DBI flobr glue rlang RSQLite]; }; + dbflobr = derive2 { name="dbflobr"; version="0.2.1"; sha256="0q736fpz18kq18jr8ga1jxh3vggmd7xws0sda83h95gkfx96pf8p"; depends=[blob chk clisymbols crayon DBI flobr glue rlang RSQLite]; }; dbglm = derive2 { name="dbglm"; version="1.0.0"; sha256="1ljfi31n8d1mh1lr4q00klp74fz0c0jy9wdy2svhlzaszbrg76ky"; depends=[DBI dbplyr dplyr knitr purrr rlang stringr tibble tidypredict tidyr tidyverse vctrs]; }; dbhydroR = derive2 { name="dbhydroR"; version="0.2-8"; sha256="1gd3n6i47qbxp6d3y5sjvgmxc5p3afy2lhkg9020ws1xm0bk9q7d"; depends=[httr reshape2 XML]; }; dblcens = derive2 { name="dblcens"; version="1.1.7"; sha256="02639vyaqg7jpxih8cljc8snijb78bb084f4j3ns6byd09xbdwcw"; depends=[]; }; @@ -7881,7 +7896,7 @@ in with self; { decorators = derive2 { name="decorators"; version="0.1.0"; sha256="0whcwi68h374pm85gzwaw7kcjhgka1il12g90vrf87lafhbl2x4i"; depends=[purrr]; }; deducorrect = derive2 { name="deducorrect"; version="1.3.7"; sha256="10lvhdnnc6xiy20hy6s5rpqcvilj8x0y6sn92rfjkdbfsl00sslp"; depends=[editrules]; }; deductive = derive2 { name="deductive"; version="1.0.0"; sha256="11cn6wncd438g5ar5pjw6rw50060mksjf0xjcds92s97dz5m28a4"; depends=[lintools stringdist validate]; }; - dedupewider = derive2 { name="dedupewider"; version="0.0.2"; sha256="1vqp3pab318idq2dnqp68fwv7bk36aablvjsnb2y97azxan6kfbl"; depends=[data_table]; }; + dedupewider = derive2 { name="dedupewider"; version="0.1.0"; sha256="18s8m0nzmx8ai4gcv5rv3rvmngw1q0pxj013v433xj76z2drqdaz"; depends=[data_table]; }; deep = derive2 { name="deep"; version="0.1.0"; sha256="1764cnsax8jwp2pb6rnmlb0f5m99jss84yi9rp017hdm20izvzrq"; depends=[]; }; deepMOU = derive2 { name="deepMOU"; version="0.1.1"; sha256="1r05wg01nighmhs2r8z91w091fz2r1ryb1j0mi96knqqdjgcbh4i"; depends=[dplyr entropy extraDistr ggplot2 MASS Rfast skmeans]; }; deepNN = derive2 { name="deepNN"; version="1.1"; sha256="0iqvr8cl7ks5qvwsp1sx10r4jpbchf4mlsq0s3icr2cs3x3ryxvi"; depends=[Matrix]; }; @@ -7903,7 +7918,7 @@ in with self; { degross = derive2 { name="degross"; version="0.9.0"; sha256="17n389a0k4jswgs908bcdhi410wpd1ljxh5izv35cldfq7dhjb3k"; depends=[cubicBsplines]; }; dejaVu = derive2 { name="dejaVu"; version="0.3.0"; sha256="0l30m707zrp05d7hywlx443n02mflxqsampmcblj3fvcbyywc1fd"; depends=[MASS]; }; delayed = derive2 { name="delayed"; version="0.3.0"; sha256="04f4k683jzb763sb9knb81lw8df56y1378g4i3c1x8m83bvj1mhs"; depends=[assertthat BBmisc data_table future igraph progress R6 rlang rstackdeque uuid visNetwork]; }; - deldir = derive2 { name="deldir"; version="1.0-5"; sha256="0n0lphhpx9w41zgmmijvghlf1n9ii3kd4siqp36l8iw1afnjvyd0"; depends=[]; }; + deldir = derive2 { name="deldir"; version="1.0-6"; sha256="1igq0l2knsbhizncgydcsidgkvvlwwlkrifbcdyhnzk0bhrdixkd"; depends=[]; }; delt = derive2 { name="delt"; version="0.8.2"; sha256="06g03wy9r2qvly0lnv5fv4k366mhlk56qkvak0xaxy99p1i34kmv"; depends=[denpro]; }; deltaPlotR = derive2 { name="deltaPlotR"; version="1.6"; sha256="15vjg3viyfrxvvh34p8i7j8p0vpg5628g8198adhi0i2ri3ygz9a"; depends=[MASS]; }; deltar = derive2 { name="deltar"; version="1.0.0"; sha256="1ki89ysz4qlq5z094ybg3aqfcb6g633ccvpj1cg6nri9z5qjwpm1"; depends=[Bchron]; }; @@ -7916,8 +7931,8 @@ in with self; { demography = derive2 { name="demography"; version="1.22"; sha256="1m15capbfknr4rqxmfgj1vb7rmgambk6r9ic37149525sg7wn3j6"; depends=[cobs forecast ftsa mgcv rainbow RCurl strucchange]; }; demu = derive2 { name="demu"; version="0.3.0"; sha256="1mp5iz8mg0d6cyqi3f6fdhk6x5xxvng5bi13b7jnlp60wpjrq0il"; depends=[ClusterR fields Matrix Rcpp RcppArmadillo spam]; }; dendRoAnalyst = derive2 { name="dendRoAnalyst"; version="0.1.3"; sha256="1rg8xra4z3q9czkqydn2587iqwp7whscv8camrkhjpc38788cf4q"; depends=[boot pspline zoo]; }; - dendextend = derive2 { name="dendextend"; version="1.15.1"; sha256="0zf4w4rc2jj30i3x0m0gnkwidfmn3cvz1wirp20amq4v3n9420md"; depends=[ggplot2 magrittr viridis]; }; - dendroTools = derive2 { name="dendroTools"; version="1.1.4"; sha256="1491vvdha6vm8992ah67vp1pgsz4khjzwnnddjp8pblacnswja59"; depends=[boot brnn Cubist dplyr ggplot2 gridExtra knitr lubridate magrittr MLmetrics oce plotly psych randomForest reshape2 scales viridis]; }; + dendextend = derive2 { name="dendextend"; version="1.15.2"; sha256="06wjs8451hmnimzgngpzbai3yrgy33133vzzapa8jib9crdqi8sb"; depends=[ggplot2 magrittr viridis]; }; + dendroTools = derive2 { name="dendroTools"; version="1.2.0"; sha256="1sm35xicaxcpfg6r34539kc2kzj8ya0aqwa7i3iqdv81611nkqsp"; depends=[boot brnn Cubist dplyr ggplot2 gridExtra knitr lubridate magrittr MLmetrics oce plotly psych randomForest reshape2 scales viridis]; }; dendroextras = derive2 { name="dendroextras"; version="0.2.3"; sha256="0hb7crbgsnbcwvbk05iz5ik45n7zgysmwjj6xc46131yd8l0i1qx"; depends=[]; }; dendrometeR = derive2 { name="dendrometeR"; version="1.0.0"; sha256="1par27ipgbfbrmdlwvkf82i5dgnfrcawmavakrf8lplin2hhb7gs"; depends=[forecast pspline zoo]; }; dendsort = derive2 { name="dendsort"; version="0.3.4"; sha256="0rs7y471wrhkgibxdmfh5xhp3pa004rrlm2w08b6qli5gq4im5d2"; depends=[]; }; @@ -7959,7 +7974,7 @@ in with self; { designsize = derive2 { name="designsize"; version="0.1.0"; sha256="1c9b320vssw3s1ybyialg5s85k1vfllbw40qfgmvnsr3imc2inb2"; depends=[]; }; desirability = derive2 { name="desirability"; version="2.1"; sha256="094gxvp6a60lfcc0a0gk9rv1p6ajnzq9m58sy8cvhcj5337g4fmk"; depends=[]; }; desire = derive2 { name="desire"; version="1.0.7"; sha256="0jmj644nj6ck0gsk7c30af9wbg3asf0pqv1fny98irndqv508kf6"; depends=[loglognorm]; }; - desplot = derive2 { name="desplot"; version="1.8"; sha256="0i3vwg0v3snan6rvgc2v3i01fdi3xbw3k407zrxdai27i0mjanx8"; depends=[ggplot2 lattice reshape2]; }; + desplot = derive2 { name="desplot"; version="1.9"; sha256="0dg8j3l6x12g4h5hsxwhxvc8i03gwlvm80l03rx3wwqsx070if1y"; depends=[ggplot2 lattice reshape2]; }; details = derive2 { name="details"; version="0.2.1"; sha256="03fw3jbf1a34w9c205wwjkqnw6ic1gylsf36qw33mx4ba252s2hy"; depends=[clipr desc httr knitr magrittr png withr xml2]; }; detect = derive2 { name="detect"; version="0.4-4"; sha256="1gzd98b4kg5rw0kpgznrb1wmr3iavdq5983n6wqx33lga1lqq9d6"; depends=[Formula Matrix pbapply]; }; detectR = derive2 { name="detectR"; version="0.1.0"; sha256="1l93b8xx6xridwcvs15xgfm7w05p3r233rxpakpii3d71rnbs8cy"; depends=[doParallel foreach glasso lavaan LogConcDEAD signal]; }; @@ -7976,7 +7991,7 @@ in with self; { devoid = derive2 { name="devoid"; version="0.1.1"; sha256="14cf75wih7401vmrfmswc9cihgmbyn90wg2vjkzv628mm5fgg01h"; depends=[]; }; devtoolbox = derive2 { name="devtoolbox"; version="0.1.0"; sha256="0ry0liw7a27nndhb5p7migx2ji2g3n1qpip1yr7mlikb7vxap2d6"; depends=[dplyr DT flexdashboard ggiraph ggplot2 gh htmltools httr jsonlite lubridate magrittr markdown purrr reshape2 rmarkdown stringr tidyr tidyselect]; }; devtools = derive2 { name="devtools"; version="2.4.2"; sha256="01cg2ykg0av6z7bgl41njcxcii8vjj8ipch26xazp4yjai8abw3i"; depends=[callr cli desc ellipsis fs httr lifecycle memoise pkgbuild pkgload rcmdcheck remotes rlang roxygen2 rstudioapi rversions sessioninfo testthat usethis withr]; }; - dexter = derive2 { name="dexter"; version="1.1.3"; sha256="19cvgg14zv3swr8jrvpdsbsrx3vxly4zcg5wmb07r1rvqlh2lgcg"; depends=[DBI dplyr MASS Rcpp RcppArmadillo rlang RSQLite tidyr]; }; + dexter = derive2 { name="dexter"; version="1.1.4"; sha256="0clyhpnzm8an5hcs4lf34ydqnvj0gpsikfwhd3pmh4sg9rkhiwl5"; depends=[DBI dplyr MASS Rcpp RcppArmadillo rlang RSQLite tidyr]; }; dexterMST = derive2 { name="dexterMST"; version="0.9.2"; sha256="118y8a33l85klj6w5vj5mkr64xvmbf16n6ff3nsk7nx7v1f26x6d"; depends=[crayon DBI dexter dplyr igraph Rcpp RcppArmadillo rlang RSQLite tidyr]; }; dextergui = derive2 { name="dextergui"; version="0.2.3"; sha256="1vq2flgry3dl90laj6dq3wsd6b90h3s3kbaqj99f67majagqqdcl"; depends=[Cairo DBI dexter dplyr DT ggExtra ggplot2 ggridges htmltools htmlwidgets jsonlite networkD3 RCurl readODS readxl rlang shiny shinyBS shinyFiles shinyjs tibble tidyr writexl]; }; dfCompare = derive2 { name="dfCompare"; version="1.0.0"; sha256="1lhx69j0bkjbnp5jz23hrbxjcf04vf3big4k593ixz003xs2077f"; depends=[]; }; @@ -8090,7 +8105,7 @@ in with self; { discreteMTP = derive2 { name="discreteMTP"; version="0.1-2"; sha256="13qsf1kc3rph0kkdkz31qj072www5dwjyk73lfpy141rzhcn1v1x"; depends=[]; }; discreteRV = derive2 { name="discreteRV"; version="1.2.2"; sha256="1lhf67cccr96zl3j1sysh2bv0pbgvkbgjdzm35fvrdm7k74ypjsi"; depends=[MASS plyr]; }; discretecdAlgorithm = derive2 { name="discretecdAlgorithm"; version="0.0.7"; sha256="01x3qfjj7dwv0m9q8zdhfrpbj9ys9y5p7d3z8ywjrqy4jw88svjs"; depends=[igraph Rcpp RcppEigen sparsebnUtils]; }; - discretefit = derive2 { name="discretefit"; version="0.0.0"; sha256="0g9a83hiqkpicdp1p59470xgp6nqj2k82q9zvbaiiz9jysz511df"; depends=[Rcpp]; }; + discretefit = derive2 { name="discretefit"; version="0.1.1"; sha256="00na797gvcv6mk78kcmd82xgcz9qmv489hm3i9lg6gr593iw1xsw"; depends=[Rcpp]; }; discretization = derive2 { name="discretization"; version="1.0-1"; sha256="00vq2qsssnvgpx7ihbi9wcafpb29rgv01r06fwqf9nmv5hpwqbmp"; depends=[]; }; discrim = derive2 { name="discrim"; version="0.1.3"; sha256="1m54qq2a9k5xphmz7a1701vxvfzyb0g477mb74x0s152gj49xcm0"; depends=[dials parsnip purrr rlang tibble withr]; }; disdat = derive2 { name="disdat"; version="1.0-0"; sha256="1q8v40m0vjni3kx0f04qb99adxcx783p9lfixvvq6viz13v1ygcw"; depends=[]; }; @@ -8230,7 +8245,7 @@ in with self; { doubcens = derive2 { name="doubcens"; version="1.1"; sha256="1hn65n67by3xqbcnaf5jja5pli0g6wpbbz2sfzd7i2nms7kiywhp"; depends=[]; }; double_truncation = derive2 { name="double.truncation"; version="1.7"; sha256="0hrb1qli7i4jhc705rb02zbq2nyk0i406bb8gpy4jrzygjjbq3g0"; depends=[]; }; doubt = derive2 { name="doubt"; version="0.1.0"; sha256="16avp0f7ks2zd4ckakvfm57zng2jk0fg3fz6vbm05lzhqymh6y30"; depends=[unglue]; }; - downlit = derive2 { name="downlit"; version="0.2.1"; sha256="0z4fz7c9kyd9v72wl3iqs2wxspi975d6b0rgjr9lvg8a18maa9z6"; depends=[brio digest evaluate fansi rlang vctrs yaml]; }; + downlit = derive2 { name="downlit"; version="0.4.0"; sha256="10zvrqdpwavdy97h3q26bqh3k63z61fmc04w9vwsnvmnv8hnh3vl"; depends=[brio desc digest evaluate fansi memoise rlang vctrs yaml]; }; downloader = derive2 { name="downloader"; version="0.4"; sha256="1axggnsc27zzgr7snf41j3zd1vp3nfpmq4zj4d01axc709dyg40q"; depends=[digest]; }; downloadthis = derive2 { name="downloadthis"; version="0.2.1"; sha256="12df3cxg1x84f3sibllykd5wqs11mr4nlyv8hj8bh9d6wjvwj2li"; depends=[base64enc bsplus fs ggplot2 htmltools magrittr mime readr writexl zip]; }; downscaledl = derive2 { name="downscaledl"; version="1.0"; sha256="0lqxngzpxj65b48j5w0n8dg6fp4lgg5zpgxc2wj6d9wh5f97l71b"; depends=[dplyr keras magrittr raster Rcpp RcppArmadillo rgdal rstack sp tensorflow]; }; @@ -8272,13 +8287,13 @@ in with self; { drifter = derive2 { name="drifter"; version="0.2.1"; sha256="1xsp8cm02wd8zink0jqrdaii7s2dh0rw96rs6k8zr2g0341wmfba"; depends=[DALEX dplyr ingredients tidyr]; }; drimmR = derive2 { name="drimmR"; version="1.0.1"; sha256="0fi0ifb9y2jfb347684fd9pjfgn4b693yb5sqbcfpf2z7jvknsi1"; depends=[doParallel dplyr foreach future ggplot2 Rdpack reshape2 seqinr tidyverse]; }; driveR = derive2 { name="driveR"; version="0.2.1"; sha256="1zc14j7aarxbw11p5gardqkwrab71b8wfrpd1q2g6r9dg98w146i"; depends=[caret GenomeInfoDb GenomicFeatures GenomicRanges org_Hs_eg_db randomForest rlang S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene]; }; - drmdel = derive2 { name="drmdel"; version="1.3.1"; sha256="1bpm9jj9dxk2daxp1yb7pn9jd750p27qa84vdfxpacm5r0mggnys"; depends=[]; }; + drmdel = derive2 { name="drmdel"; version="1.3.2"; sha256="1772fxm3qs01h14qklp2rawcdm0vmjmb2mi62v1zl1hbxisnfq4s"; depends=[]; }; droll = derive2 { name="droll"; version="0.1.0"; sha256="0gd1vnvkjdsw7gz4czi4g9zq5080awfr4dy2srgksh4ah4ki4vm3"; depends=[Ryacas]; }; dropR = derive2 { name="dropR"; version="0.1"; sha256="0sw5lqlfdn64dbykxdhk1pz18f83if871vkapa2nxgcfiy79b0vs"; depends=[plyr shiny]; }; droptest = derive2 { name="droptest"; version="0.1.3"; sha256="1wlfhj6c4pb5mcybyd2bcn55y3azk7dv7d7il97qwbhl8kf59csl"; depends=[data_table]; }; drord = derive2 { name="drord"; version="1.0.1"; sha256="0xi85s6y78d54qv3cw7q72dz5kcs8cc8nyjyaxr5h6pfpzi2l8i9"; depends=[ggplot2 MASS ordinal VGAM]; }; drought = derive2 { name="drought"; version="1.0"; sha256="1rj3aycvkb0f85p12l356rlhid4zfzqkhks20x2hhwvpk8nhri8h"; depends=[copula]; }; - drpop = derive2 { name="drpop"; version="0.0.1"; sha256="0l7w8rn6ljq8n9n4vd2i0pn0wr3g88xzzpm02rmwsq2f22ngxbci"; depends=[dplyr gam ggplot2 janitor nnet nnls ranger reshape2 stringr SuperLearner tidyr]; }; + drpop = derive2 { name="drpop"; version="0.0.2"; sha256="01lr3xchqnd2g75k8w8p4rzbqnd5rrcjhfcr3bz7nja5j4vrq307"; depends=[dplyr gam ggplot2 janitor nnet nnls ranger reshape2 stringr SuperLearner tidyr]; }; drtmle = derive2 { name="drtmle"; version="1.1.0"; sha256="08a6k0nrg6mqdslwjc71583x52vnax87nbfalk98zczwvrrdwvxa"; depends=[future_apply np SuperLearner]; }; drumr = derive2 { name="drumr"; version="0.1.0"; sha256="09xi3sf424bpq10fq25j209dylfbi1lfd911r44ffadkxzvp5p1s"; depends=[audio stringr]; }; ds = derive2 { name="ds"; version="4.0"; sha256="1iic5fb27cnhsa83zg28hydrhzc01i9z0711xvk95c3gv7mbfp2p"; depends=[]; }; @@ -8396,7 +8411,7 @@ in with self; { easyalluvial = derive2 { name="easyalluvial"; version="0.3.0"; sha256="02l0jy3bwp3qrz6g5iknl2fsfqi6a6wzn8q18k8518xczlsn1gbd"; depends=[dplyr forcats ggalluvial ggplot2 ggridges gridExtra magrittr progress progressr purrr randomForest RColorBrewer recipes rlang stringr tibble tidyr]; }; easyanova = derive2 { name="easyanova"; version="7.0"; sha256="1zpwh3r1r0n11hgqzph8f2aac44qb6rpnhk73hcblq0f9vs0an55"; depends=[nlme]; }; easycsv = derive2 { name="easycsv"; version="1.0.8"; sha256="1i2k5372b6a5pypk6m0rsvvkcy0y51pvh57a60rpgqk8q0yq8pig"; depends=[data_table]; }; - easylabel = derive2 { name="easylabel"; version="0.1.0"; sha256="0am3xi6p0bsrva2hzndnfyw686dcrzj53m8g8a2zvkqqixgq3iv9"; depends=[DT plotly RColorBrewer shiny]; }; + easylabel = derive2 { name="easylabel"; version="0.2.2"; sha256="0dqs0qqha6diz1nn8zkd27yjjirzgs4bdpd0h5cgq5d7jm465ixv"; depends=[DT gtools plotly RColorBrewer shiny shinybusy shinycssloaders splus2R]; }; easynls = derive2 { name="easynls"; version="5.0"; sha256="1ma2q4y5dxk6q99v880vqfsgy1fha96j7pi8ch699l0pi6bx0d6c"; depends=[]; }; easypackages = derive2 { name="easypackages"; version="0.1.0"; sha256="00paxdwz4bw3imqhcsw6hj1h0gmnpishlxcj79n826vhdy23jc4y"; depends=[assertthat devtools]; }; easypower = derive2 { name="easypower"; version="1.0.1"; sha256="1vf0zv55yf96wjxja6ifdjvgc9nw0jl0hnc1ygyjd8pmwbgdz9bl"; depends=[pwr]; }; @@ -8406,7 +8421,7 @@ in with self; { eatATA = derive2 { name="eatATA"; version="1.0.0"; sha256="1n966jrcmifi1gbzcnyavsnzmcgsp138x32mcl8pj6w3by97i781"; depends=[lpSolve mathjaxr Matrix Rglpk]; }; eatDB = derive2 { name="eatDB"; version="0.5.0"; sha256="0lym1g411ykb2vzi5yr570lmyh30br667wkm5dvnvfs7bsmk05il"; depends=[DBI RSQLite]; }; eatGADS = derive2 { name="eatGADS"; version="0.18.1"; sha256="09hjn1w2mng2ypmlm8zw9dl4q430c75i5nil4x86bm9ap8zw511n"; depends=[data_table eatDB eatTools haven hms plyr stringi tibble]; }; - eatRep = derive2 { name="eatRep"; version="0.13.6"; sha256="0k3r46bzxhb5a423d4vp2c4wy4gmh2p80qnm5h2hs928l5q1b7hn"; depends=[BIFIEsurvey boot car combinat eatGADS eatTools EffectLiteR estimatr fmsb Hmisc janitor lavaan lme4 mice miceadds msm plyr progress reshape2 survey tidyr]; }; + eatRep = derive2 { name="eatRep"; version="0.13.7"; sha256="1667cq00gvcbvsfmplv97bmgkfyq9zi08d5yzpa0l7x7d5xgxmm2"; depends=[BIFIEsurvey boot car combinat eatGADS eatTools EffectLiteR estimatr fmsb Hmisc janitor lavaan lme4 mice miceadds msm plyr progress reshape2 survey tidyr]; }; eatTools = derive2 { name="eatTools"; version="0.7.0"; sha256="1rhf6c6j7qwz5y20dip07h4044581pf9kaq71rl8sswbcsb7nny5"; depends=[data_table]; }; ebGenotyping = derive2 { name="ebGenotyping"; version="2.0.1"; sha256="1jllzc7kvvckrws8qhgvwy626llyb68sp1davp7swx48sf7rwcxc"; depends=[]; }; ebSNP = derive2 { name="ebSNP"; version="1.0"; sha256="0x3ijwg4yycsfy6jch1zvakzfvdgpiq8i7sqdp5assb8z1823w0b"; depends=[]; }; @@ -8426,7 +8441,7 @@ in with self; { ecespa = derive2 { name="ecespa"; version="1.1-13"; sha256="0a8s923xzw6wkl9240mqsr7lpvjmi20kqn2zsbax3rrrdf4gqfkx"; depends=[spatstat spatstat_core spatstat_geom]; }; ech = derive2 { name="ech"; version="0.1.1.2"; sha256="1mw68dkm6n6zj27rmyw33gaha1nly1srr6v1d5iib72b1gwnik8l"; depends=[assertthat curl dplyr fs geouy glue haven janitor labelled laeken purrr readxl rlang srvyr statar stringr survey tidyr]; }; echarts4r = derive2 { name="echarts4r"; version="0.4.2"; sha256="1mv080bcprskzhc778ccd5yvrp48fawdjah0hwj795cz72603jd3"; depends=[broom corrplot countrycode dplyr htmltools htmlwidgets jsonlite purrr rstudioapi scales shiny]; }; - echarty = derive2 { name="echarty"; version="0.3.1"; sha256="1fqa77g5mvxwv24gd4fvcy5d3m5i5dcfs9qlwgky2hzsp9y8wh75"; depends=[dplyr htmltools htmlwidgets jsonlite magrittr]; }; + echarty = derive2 { name="echarty"; version="1.4.0"; sha256="09j7kkkfwjl817k9wbl872ix0cs2973lvmd4az4fns565nhb4wdy"; depends=[dplyr htmltools htmlwidgets jsonlite magrittr]; }; echelon = derive2 { name="echelon"; version="0.1.0"; sha256="0dw15igx8jwgfr1f7p5pspxjiqhqmfp7shdhq8g07f4bj76irzm4"; depends=[]; }; echo_find = derive2 { name="echo.find"; version="4.0.1"; sha256="1nadqqpxgx2ck16nzjp5ajm6714452qzllg5cq1jpisv1yb31db2"; depends=[boot minpack_lm]; }; echogram = derive2 { name="echogram"; version="0.1.2"; sha256="0kir7x32fk3fc63kr3b2j0hfkmivs2pwrlxyjvdg7xqc59hjp3ma"; depends=[geosphere readHAC]; }; @@ -8454,7 +8469,7 @@ in with self; { ecospat = derive2 { name="ecospat"; version="3.2"; sha256="1w937f56q8lgjyqc575vxy3vfhd53ri9yiw300qqx6mnj66ijsl8"; depends=[ade4 adehabitatHR adehabitatMA ape biomod2 classInt dismo doParallel ecodist foreach gbm gtools iterators ks maps maptools matrixStats nabor poibin PresenceAbsence randomForest raster rms snowfall sp vegan]; }; ecostats = derive2 { name="ecostats"; version="0.1.4"; sha256="0xkhkcc6psgvvwhys9azhxisnqw0azd7brp0rg60d725jqvwhbyp"; depends=[GET mgcv mvtnorm]; }; ecostatscale = derive2 { name="ecostatscale"; version="1.0"; sha256="14i5wg5qxqn3qzycgqda6blb0imkckq23gl3c3whfa72a3a8y30q"; depends=[deSolve mvtnorm]; }; - ecotox = derive2 { name="ecotox"; version="1.4.2"; sha256="0i4wjarg8gj4hfr0d4fqk74ymhkzrq3vkklpv5v1511ci19hpv16"; depends=[tibble]; }; + ecotox = derive2 { name="ecotox"; version="1.4.4"; sha256="01sc2lf2kca7wqqyd3gk48va39gb7ijzgs2smgb2k4xbzjqndg08"; depends=[tibble]; }; ecotoxicology = derive2 { name="ecotoxicology"; version="1.0.1"; sha256="084xkr59d7x9zxmsnsyym2x8jshz6ag6rvnmhd1i6fzar8ypwccb"; depends=[]; }; ecotraj = derive2 { name="ecotraj"; version="0.0.1"; sha256="0570j338107bxx004wwx76j1x981nh1apgp9x33r4ddz4f589aag"; depends=[circular Kendall MASS Rcpp]; }; ecoval = derive2 { name="ecoval"; version="1.2.7"; sha256="1hnryk9y3074iy7hv40jr00lpg2w99l7halwv6bj14v6ygddj2k7"; depends=[jpeg rivernet utility]; }; @@ -8481,7 +8496,7 @@ in with self; { edgarWebR = derive2 { name="edgarWebR"; version="1.1.0"; sha256="1v9rdj2qdcvzz7g78pa9j6l8d6zjz1q06h09c4547r67bzfz1nxy"; depends=[httr jsonlite xml2]; }; edgeCorr = derive2 { name="edgeCorr"; version="1.0"; sha256="19n67yc58ksin7xydrnfsyyw7fqawm5xli67cz4lv4wb62w6r6ld"; depends=[]; }; edgeRun = derive2 { name="edgeRun"; version="1.0.9"; sha256="0d5nc8fwlm61dbi00dwszj1zqlij4gfds3w1mpcqnnfilr2g3di1"; depends=[data_table edgeR]; }; - edgebundle = derive2 { name="edgebundle"; version="0.2.1"; sha256="167b2qm6bhxsx94njrk256yvmrf3frcmbydcw9fzrhms7yz1nrmz"; depends=[igraph interp Rcpp reticulate]; }; + edgebundle = derive2 { name="edgebundle"; version="0.3.0"; sha256="0hwj4qwb3x5y6svzf9wi9bb5q73x3qyknq0v659i9x99pnszqsld"; depends=[igraph interp Rcpp reticulate]; }; edgebundleR = derive2 { name="edgebundleR"; version="0.1.4"; sha256="0pajr95qqppk2m4l7rfi46rll32z8a7lmq0vmb3p8n0aks5ajn1n"; depends=[htmlwidgets igraph rjson shiny]; }; edgedata = derive2 { name="edgedata"; version="0.2.0"; sha256="11sc7x0m00yhn2c4601dpjv3brmf57i8barsl3p7bawcvka8z5lr"; depends=[]; }; edina = derive2 { name="edina"; version="0.1.1"; sha256="1lpmidyxi54byrsnwwadkh5rr454635xrwa4v2wz8mqr2hngxis3"; depends=[ggplot2 jjb Rcpp RcppArmadillo reshape2 rgen]; }; @@ -8539,12 +8554,12 @@ in with self; { einet = derive2 { name="einet"; version="0.1.0"; sha256="02v4k6031q2bcjkhbypzkgdj1lyvqbsi1nb0y40zb26bk2381ycq"; depends=[assertthat entropy igraph magrittr shiny]; }; einsum = derive2 { name="einsum"; version="0.1.0"; sha256="01930c38hkbqhn8d5g7jfhr0mrdi077rg0kkbp5kagxcqx6jrg7w"; depends=[glue mathjaxr Rcpp]; }; eiopaR = derive2 { name="eiopaR"; version="0.1.1"; sha256="1f8fm6ia5invskc7a7hcjvf52afdkw38y1vx7jlpqxvawswmwpv2"; depends=[curl httr jsonlite]; }; - eirm = derive2 { name="eirm"; version="0.4"; sha256="0gnjrkivkpbbfj6c51706w3nmxrzz8l0pphdb0ig2a32pr8m3s2b"; depends=[ggeffects ggplot2 lme4 magrittr optimx readxl reshape2 shiny shinycssloaders shinydashboard]; }; + eirm = derive2 { name="eirm"; version="0.5"; sha256="0zs45n6xkyi9agrgv36bz2prdcplln66713xjr6sxyip52z9ksbk"; depends=[blme ggeffects ggplot2 lme4 magrittr optimx readxl reshape2 shiny shinycssloaders shinydashboard]; }; eive = derive2 { name="eive"; version="2.3"; sha256="073hwx944db7zxq6yib6yvciaic11k49zl1iqphippcd5ygkad80"; depends=[Rcpp]; }; eivtools = derive2 { name="eivtools"; version="0.1-8"; sha256="0ynmrql6dv10m7cwba5mzwlbvp6ab53nzqqvk3ihwyiqzmnnmpk4"; depends=[R2jags]; }; eixport = derive2 { name="eixport"; version="0.5.0"; sha256="1k5p9v5jmw5cs31sn69fjdfhh5yyzk85828aljsmsyx1ycibnwmg"; depends=[cptcity data_table ncdf4 raster sf sp]; }; elaborator = derive2 { name="elaborator"; version="1.1"; sha256="1kq3qqqywpzrk1ichsljvfijhsybmj7s0scmswmwi2crqi67gzp8"; depends=[bsplus dendextend dplyr forcats haven purrr RColorBrewer reshape2 rlang seriation shape shiny shinydashboard shinyWidgets tidyr]; }; - elasdics = derive2 { name="elasdics"; version="0.1.2"; sha256="0w0b38v2haqn5a7qf1zdn7ypqgp8al7qzmaxmycl184v48w7bk5z"; depends=[numDeriv]; }; + elasdics = derive2 { name="elasdics"; version="0.1.3"; sha256="0xd71kgj41792h91fikvjmqbl831ribbxlvv1s216vpba74z8qqs"; depends=[numDeriv]; }; elasso = derive2 { name="elasso"; version="1.1"; sha256="0nz3vw803dvk4s45zc9swyrkjwna94z84dn4vfj3j17h74a0cij2"; depends=[glmnet SiZer]; }; elastic = derive2 { name="elastic"; version="1.2.0"; sha256="0k98ziacyxl1pyhyynmswcncqwl0a05sawypncdpdd9xr77nvgi6"; depends=[crul curl jsonlite R6]; }; elasticIsing = derive2 { name="elasticIsing"; version="0.2"; sha256="1zjgvz7w5j06x2cd1fzjl85di95ah67m1lanw01kic2bvhfwfbn6"; depends=[cvTools glmnet magrittr qgraph reshape2]; }; @@ -8569,6 +8584,7 @@ in with self; { elliptic = derive2 { name="elliptic"; version="1.4-0"; sha256="1dhba0yfxjd5rlqsxp5a7s2hclfkla9wigsr39dlma67l6qjjmxn"; depends=[MASS]; }; ellipticalsymmetry = derive2 { name="ellipticalsymmetry"; version="0.1.2"; sha256="035q6zjf0lnx704q5g51bhv1xp7y0yn31ph57zydk92gfpgn468l"; depends=[doParallel doRNG foreach ICSNP]; }; elmNNRcpp = derive2 { name="elmNNRcpp"; version="1.0.3"; sha256="1cv6si3vd91q42dfg4dbyn3qd8ah4pywsdpma84y9kdnn1mmvnxb"; depends=[KernelKnn Rcpp RcppArmadillo]; }; + elrm = derive2 { name="elrm"; version="1.2.5"; sha256="1kqwr0nfmnb729h01p14a24kd9scsw7j7qj133kpg0ppcfsnygld"; depends=[coda]; }; elsa = derive2 { name="elsa"; version="1.1-28"; sha256="01sj2a4yhv5m6qj6ih26zw4yzd8s27lll7yp0yysjjrwz79a0fbq"; depends=[raster sp]; }; eltr = derive2 { name="eltr"; version="0.1.0"; sha256="0f4sy2hhsbghasl5xcnqlgxqhb503pl73c5vdkgpcm73smrqbpbv"; depends=[data_table]; }; emIRT = derive2 { name="emIRT"; version="0.0.11"; sha256="1h91q9vi9cv14bmkaakyynw2z9sx51w0c2kw2in0x91wx7scmd0p"; depends=[pscl Rcpp RcppArmadillo]; }; @@ -8652,8 +8668,9 @@ in with self; { epiGWAS = derive2 { name="epiGWAS"; version="1.0.2"; sha256="0jqblfmz02za3b2pgi15379bzgh98yv5kyv8kh0lkzhrmpgph2zj"; depends=[DescTools glmnet matrixStats SNPknock]; }; epiR = derive2 { name="epiR"; version="2.0.38"; sha256="0bb0c2fhjgr845lr5pgsac10faqa6zrq6sb0jhsm6qpaqsi1f1ja"; depends=[BiasedUrn lubridate pander survival]; }; epibasix = derive2 { name="epibasix"; version="1.5"; sha256="0ivr51x37cbdryli9b4p4iq9v2c90zwmywrwdmg7ryq5vprvvbp0"; depends=[]; }; - epicontacts = derive2 { name="epicontacts"; version="1.1.0"; sha256="0f4a1y311z3fxw7ygj6fgsq6d2qn0ivxsjlh742pkmg3jb63s0f3"; depends=[colorspace dplyr igraph magrittr threejs visNetwork]; }; + epicontacts = derive2 { name="epicontacts"; version="1.1.2"; sha256="07vnvfqm9vghmrjy3g1x3mz6qsf09qi04xq2nm9n4cgxjmbr0gia"; depends=[colorspace dplyr igraph threejs visNetwork]; }; epidata = derive2 { name="epidata"; version="0.4.0"; sha256="0v3s1vrf2iqh03rkkwrlz6mhpbsbjxkayrqdx04vrnja4i9ljshk"; depends=[dplyr httr jsonlite purrr readr rvest stringi tidyr tinytest xml2]; }; + epidemia = derive2 { name="epidemia"; version="1.0.0"; sha256="1lfbibcpm58a05wrikwfzxkfqxw6yk41b1q07wpchxpz1lfv2v5y"; depends=[bayesplot BH dplyr ggplot2 hrbrthemes lme4 magrittr Matrix Rcpp RcppEigen Rdpack rlang rstan rstanarm rstantools scales StanHeaders tidyr zoo]; }; epifitter = derive2 { name="epifitter"; version="0.3.0"; sha256="104hl3b3951psi023hv95486ygcv9ilmqkzw96yygym7rhkaww9m"; depends=[DescTools deSolve dplyr ggplot2 knitr magrittr minpack_lm tibble tidyr]; }; epiflows = derive2 { name="epiflows"; version="0.2.0"; sha256="09ri1p73ih0i08irc06ff169hi5vcl8bdi63b056kzxgmv17yqkp"; depends=[epicontacts geosphere ggmap ggplot2 htmltools htmlwidgets leaflet sp tibble visNetwork]; }; epigraphdb = derive2 { name="epigraphdb"; version="0.2.2"; sha256="1kd46anhijcx4sw4ghzd417vwdl64375cbrlj0shcvv9gcc3h38n"; depends=[glue httr jsonlite magrittr purrr tibble]; }; @@ -8728,6 +8745,7 @@ in with self; { esc = derive2 { name="esc"; version="0.5.1"; sha256="0gns7gz55p6pha05413r3hlvd7f2v1amxkg13d197mab1ypqic7q"; depends=[]; }; escalation = derive2 { name="escalation"; version="0.1.4"; sha256="1iyjp20rzz3lrgn183jvjcf7vvmk66f3rgyv22s2ja4b98598ha4"; depends=[binom BOIN dfcrm DiagrammeR dplyr gtools magrittr purrr RColorBrewer stringr tibble tidyr tidyselect trialr viridis]; }; eseis = derive2 { name="eseis"; version="0.5.0"; sha256="03pjcms3aj7sm2wrld64v1dw53bqn9pmsayndma03abjh66rblii"; depends=[caTools fftw IRISSeismic matrixStats multitaper raster Rcpp reticulate rgdal rmarkdown shiny signal sp XML]; }; + esemifar = derive2 { name="esemifar"; version="1.0.0"; sha256="0yy5ya6saw7njf06gad3bjh2wf56y0b9hid3bjxjmxb0w9pi660i"; depends=[fracdiff smoots]; }; eshrink = derive2 { name="eshrink"; version="0.1.2"; sha256="0min4j1dyd08i0fyn9a4iasjlhq08bn74bjz8vj1gq9l114v795k"; depends=[glmnet MASS]; }; esmisc = derive2 { name="esmisc"; version="0.0.3"; sha256="1d6xrdxwn85c8s60s7vzaymh7wa9f7fzd79hq5spzd12fr3zisvj"; depends=[ggplot2 raster readr]; }; esmprep = derive2 { name="esmprep"; version="0.2.0"; sha256="076sm26mkkvig2g04k32z2dlp2h9gnqgzckhirl4pqm01siknl61"; depends=[lubridate]; }; @@ -8768,7 +8786,6 @@ in with self; { evabic = derive2 { name="evabic"; version="0.0.3"; sha256="0wd5wjsj9gbvbncaa97g1sp0211aq3nn5jc91lvhka6h34wxkcgc"; depends=[]; }; evalITR = derive2 { name="evalITR"; version="0.2.2"; sha256="0xdf3jyrsnf2jb28fwf8ydlid1n74ka7mx98jp6fidzcinw4mzmj"; depends=[]; }; evaluate = derive2 { name="evaluate"; version="0.14"; sha256="0a2y7j534gbgixkwj9r1z76l2vssw4g1hznzbpclc076wkdqpj58"; depends=[]; }; - evaluator = derive2 { name="evaluator"; version="0.4.3"; sha256="1gccymjb1ad3xw3kmqafchazv9rid6v6c3h8w96ai5b2jh8zlgwk"; depends=[cli crayon dplyr extrafont ggplot2 magrittr mc2d purrr readr readxl rlang rstudioapi scales stringi tibble tidyr vctrs viridis]; }; evclass = derive2 { name="evclass"; version="1.1.1"; sha256="00lbhcgswpv0amz0mb93kx9p91sf0d7zvxfw9i8x1zpmpfd6nhcj"; depends=[FNN]; }; evclust = derive2 { name="evclust"; version="2.0.2"; sha256="107x61vmkfmy3bmcaywz96qj35bmz4nydd0zn9amm2xnbb37lg31"; depends=[FNN limSolve Matrix mclust plyr quadprog R_utils]; }; evd = derive2 { name="evd"; version="2.3-3"; sha256="1d2r8ppblxrq6s60pf0gv4rp8ja58j8lbpax8a996ais1hpfzi9g"; depends=[]; }; @@ -8876,7 +8893,7 @@ in with self; { ez_combat = derive2 { name="ez.combat"; version="1.0.0"; sha256="1vpycf6gambwg8218wwjc9h3rhsin7qrhh0mpd3r6n9fp03y634f"; depends=[]; }; ezCutoffs = derive2 { name="ezCutoffs"; version="1.0.1"; sha256="04ah9dbfwl89xi0di0dslaf8a39nynxymm8lbacgd88al5dg7y1n"; depends=[doSNOW foreach ggplot2 lavaan moments progress]; }; ezEDA = derive2 { name="ezEDA"; version="0.1.1"; sha256="1qcgvcjksdajn2rhv52bgqz3n0lnxynjdx4gwhkgsy29ffa0sq2c"; depends=[dplyr GGally ggplot2 magrittr purrr rlang scales tidyr]; }; - ezcox = derive2 { name="ezcox"; version="1.0.1"; sha256="1sac1nsws73saf0zq7qbh1g3lv23dmh7ymy80q4nnxwf7zvbqmh8"; depends=[dplyr forestmodel ggplot2 magrittr purrr rlang scales survival tibble]; }; + ezcox = derive2 { name="ezcox"; version="1.0.2"; sha256="0mikrdmi3q7qc2fvh1hk6fwy2y9xafwggyvx0cgnzzqi5gjjfki7"; depends=[dplyr forestmodel ggplot2 magrittr purrr rlang scales survival tibble]; }; ezec = derive2 { name="ezec"; version="1.0.1"; sha256="0lpx55a8fhy6fqdv3zvzx9mh75q34r71v5kp96hkm9jzl4yvrpd2"; depends=[dplyr drc]; }; ezglm = derive2 { name="ezglm"; version="1.0"; sha256="0x7ffk3ipzbdr9ddqzv0skmpj5zwazkabibhs74faxnld7pcxhps"; depends=[]; }; ezknitr = derive2 { name="ezknitr"; version="0.6"; sha256="060a2175zh1nhzmqgz1mpj2c6721n5w5bv695jj4rbl2s2b2h4qj"; depends=[knitr markdown R_utils]; }; @@ -8912,7 +8929,6 @@ in with self; { fUnitRoots = derive2 { name="fUnitRoots"; version="3042.79"; sha256="1hsv47dm0hx3s04g9h0bjdgi79zbfihnfxxdc2jskqp94yl7azsy"; depends=[fBasics timeDate timeSeries urca]; }; fabCI = derive2 { name="fabCI"; version="0.2"; sha256="1vga322xpqzsh40n74v8vqiq8zbzrabvg58mp50bcx2ml0dikgnm"; depends=[MASS]; }; fabMix = derive2 { name="fabMix"; version="5.0"; sha256="1gii3mdii9nw423xxn9mhv1pjbw967wdarn828w04zm9dkdcwm48"; depends=[coda corrplot doParallel foreach ggplot2 label_switching MASS mclust mvtnorm RColorBrewer Rcpp RcppArmadillo]; }; - fabisearch = derive2 { name="fabisearch"; version="0.0.3.6"; sha256="0gaw9hk7il4fsc0mklb3pfxl6kg7amydvqar8m2524hcb7ar835z"; depends=[doParallel doRNG foreach NMF reshape2 rgl]; }; fable = derive2 { name="fable"; version="0.3.1"; sha256="185l3gd83nys11k389ha2ssdm9rkw9aackmz2cd2mvlym72rsnq7"; depends=[distributional dplyr fabletools Rcpp rlang tibble tidyr tsibble]; }; fable_prophet = derive2 { name="fable.prophet"; version="0.1.0"; sha256="12y2k05plg6d6lgqk6617q6z5m6xz33zdsjh56k86h230qqw68rp"; depends=[distributional dplyr fabletools lubridate prophet Rcpp rlang tsibble]; }; fabletools = derive2 { name="fabletools"; version="0.3.1"; sha256="0r2ik8p89w8r76v9iliqng2ysf9cqqdcmq89ilr8ccilfq3pgbks"; depends=[distributional dplyr generics ggplot2 lifecycle progressr R6 rlang tibble tidyr tidyselect tsibble vctrs]; }; @@ -8966,7 +8982,7 @@ in with self; { fasano_franceschini_test = derive2 { name="fasano.franceschini.test"; version="1.1.0"; sha256="122jpjis2jsd13ljjhi6ibgp1i4gg9yymkzh1rpcysj1wsxxasad"; depends=[]; }; fasi = derive2 { name="fasi"; version="1.0.0"; sha256="1hfd6nl8zvn7sybji8s1pa2wl95l2vqa07rv96yn9rk07qvdc6dy"; depends=[fastAdaboost gam naivebayes]; }; fasjem = derive2 { name="fasjem"; version="1.1.2"; sha256="1bbrcyyg96hakgla3604byrkn9034197vy2is048kdq20yr2y11n"; depends=[igraph]; }; - fasstr = derive2 { name="fasstr"; version="0.3.2"; sha256="0krd6h9vz4y3kzz13w2lq5b59v6ajr61ngcpnnk71ijn7hhmaanh"; depends=[dplyr e1071 fitdistrplus ggplot2 lubridate openxlsx PearsonDS plyr purrr RcppRoll scales tidyhydat tidyr zyp]; }; + fasstr = derive2 { name="fasstr"; version="0.3.3"; sha256="0x641cxhjawf4jrf465hnf0zkk120wcsrsd7r1n175x9jsq0z3q2"; depends=[dplyr e1071 fitdistrplus ggplot2 openxlsx PearsonDS plyr purrr RcppRoll scales tidyhydat tidyr zyp]; }; fastAdaboost = derive2 { name="fastAdaboost"; version="1.0.0"; sha256="1pv1y6znvc37pgwk99v4r0hljhipq8v6r3r5cb5vhgyl0bfi8g38"; depends=[Rcpp rpart]; }; fastDummies = derive2 { name="fastDummies"; version="1.6.3"; sha256="1pw1bpp69sbs8yc1s5ffz11q249ljfwbgfrq6irg5pyp37z38fdx"; depends=[data_table stringr tibble]; }; fastGHQuad = derive2 { name="fastGHQuad"; version="1.0"; sha256="1rjia8wggadr9xwxcmzmal0rc4g6pa3dr5888fbbnb6abl8b2lrj"; depends=[Rcpp]; }; @@ -8985,7 +9001,7 @@ in with self; { fastText = derive2 { name="fastText"; version="1.0.1"; sha256="0l0pkr3a8qckvzazh6rsz94rab8v96y4wis2my29srkwv4h447bn"; depends=[data_table ggplot2 glue Rcpp]; }; fastTextR = derive2 { name="fastTextR"; version="2.0.0"; sha256="1ggmwsw2qnq8v3s8iaxi8q66c898pc15wfgpsp6h0mc761qih5lf"; depends=[Rcpp slam]; }; fasta = derive2 { name="fasta"; version="0.1.0"; sha256="0wnppxn3039dj58xm0b66fsyq537bk8k8m56im11xj1iwc3zc6vw"; depends=[]; }; - fastai = derive2 { name="fastai"; version="2.0.9"; sha256="10s7zp9g7fypgqablzxrfpxz7hnic41fvvmj1w9lx0yp5g26pb9k"; depends=[generics ggplot2 ggpubr glue png reticulate]; }; + fastai = derive2 { name="fastai"; version="2.1.0"; sha256="1ssmx49c4qzvr4m84s8vwyrg890l2vfglh9rqkf4ljc1x2bkf8z1"; depends=[generics ggplot2 ggpubr glue png reticulate]; }; fastclime = derive2 { name="fastclime"; version="1.4.1"; sha256="0zcir8r11b2hxr9vvkmvxlzmhfcaxbr0wbjy86ysr912mp8fs9i3"; depends=[igraph lattice MASS Matrix]; }; fastcluster = derive2 { name="fastcluster"; version="1.2.3"; sha256="009amz7i5yndqw2008fgd3p11n4fsb291k2ypg3pip6dw4lr28hz"; depends=[]; }; fastcmh = derive2 { name="fastcmh"; version="0.2.7"; sha256="0hib3r3pkfdi67bdy4pf1pw6869vq4b3pg1pq1zwpyy76nbnq9vl"; depends=[bindata Rcpp]; }; @@ -9036,10 +9052,11 @@ in with self; { fctbases = derive2 { name="fctbases"; version="1.1.0"; sha256="1jf6ngdph45l105cib13lghan7d68hsjqdr8wsjz2kls8il6kz9s"; depends=[Rcpp RcppArmadillo]; }; fcuk = derive2 { name="fcuk"; version="0.1.21"; sha256="1sb7p1m5qb88028mrw95lhh8l7dxj696hjh88nfsdpnscryknfpv"; depends=[magrittr purrr stringdist tibble]; }; fdANOVA = derive2 { name="fdANOVA"; version="0.1.2"; sha256="1pycq5a4czqzi8wcfmlc9ncg827j7n0qxyj90wcv39nbcrnl3da1"; depends=[doBy doParallel fda foreach ggplot2 magic MASS]; }; - fda = derive2 { name="fda"; version="5.4.0"; sha256="000flssclb2c1sfm2czyp1qxrfrl9rp6bd8sw87ign8165maplqf"; depends=[deSolve fds Matrix]; }; + fda = derive2 { name="fda"; version="5.5.0"; sha256="0nf7481hc04yxw93d01m0g8vpb50fc3yb38y44cb0yf8mcflgky2"; depends=[deSolve fds Matrix]; }; fda_usc = derive2 { name="fda.usc"; version="2.0.2"; sha256="0z44vkzjm2h6r5af0k1iic1szvw82rbwjrm541zlwn2jycj4q96a"; depends=[doParallel fda foreach iterators MASS mgcv nlme]; }; fdaACF = derive2 { name="fdaACF"; version="1.0.0"; sha256="0qrsj25p6h2xg25v0ayk8x31d4whyy0mpf2xdpw3hcwhb71mbfhn"; depends=[CompQuadForm fda pracma vars]; }; fdaMixed = derive2 { name="fdaMixed"; version="0.6"; sha256="0hyhb67qvvhyq68k5h4ffvsl4lmw66nfy5l14kwxnn42h3b810sc"; depends=[Formula Rcpp RcppArmadillo]; }; + fdaMocca = derive2 { name="fdaMocca"; version="0.1-0"; sha256="0jqk07cs62hhsp68bpf0lcggn547jp7qjc4w55dq51fhshppc280"; depends=[doParallel fda foreach Matrix mvtnorm]; }; fdaPDE = derive2 { name="fdaPDE"; version="1.0-9"; sha256="06hm1f30rpy37xz9ybvhk759y10p8ijy7slnl9cvp4gqwzy2i8b7"; depends=[geometry Matrix plot3D plot3Drgl RcppEigen rgl]; }; fdaPOIFD = derive2 { name="fdaPOIFD"; version="1.0.2"; sha256="0rs61ja58mxpadfgkvdjq14rgaikcga0alc5a1afnrjx4djswl1k"; depends=[FastGP fdapace ggplot2 magrittr MASS patchwork reshape2 tibble]; }; fdadensity = derive2 { name="fdadensity"; version="0.1.2"; sha256="1i2xzchlsixgjzyfmbv547sy6mq90xrnyc2kpd11wwfgfrpj1ix3"; depends=[fdapace Rcpp]; }; @@ -9052,7 +9069,7 @@ in with self; { fdcov = derive2 { name="fdcov"; version="1.1.0"; sha256="0savsgcifcjjqrmbpn6m30gncq5iigqxpb19l710wlx8nm98svjh"; depends=[corrplot matlab]; }; fddm = derive2 { name="fddm"; version="0.4-0"; sha256="04fccbgplx4gv4qcmkxps7nhfl477ga7ljdv9ff3fmmp27p7w5iq"; depends=[Rcpp]; }; fdistr = derive2 { name="fdistr"; version="0.1.0"; sha256="1i9nq4jmszbmwk4m6jfn7rifsn7aay40cj6kz23b9ihj3phqffi8"; depends=[dplyr ggplot2 magrittr usethis]; }; - fdm2id = derive2 { name="fdm2id"; version="0.9.5"; sha256="0z4csd2bi0pavfaqvkidfdvri14miwh1v752m6f1h224j47krcq8"; depends=[arules car caret class cluster e1071 FactoMineR flexclust fpc glmnet ibr irr kohonen leaps MASS mclust mda meanShiftR nnet pls questionr randomForest ROCR rpart Rtsne SnowballC stopwords text2vec wordcloud xgboost]; }; + fdm2id = derive2 { name="fdm2id"; version="0.9.6"; sha256="14bln0vx3qjgqb27dpl0fcd60bk42bha75ki6lkn4w1hrhcd1rr8"; depends=[arules car caret class cluster e1071 FactoMineR flexclust fpc glmnet ibr irr kohonen leaps MASS mclust mda meanShiftR nnet pls questionr randomForest ROCR rpart Rtsne SnowballC stopwords text2vec wordcloud xgboost]; }; fdq = derive2 { name="fdq"; version="0.12"; sha256="198nsyzv0ni2mjx12wik58c7z5vrc1mfk80k3iv94dz1iq9fprqf"; depends=[data_table Fgmutils ggplot2 randomcoloR sqldf]; }; fdrDiscreteNull = derive2 { name="fdrDiscreteNull"; version="1.4"; sha256="1lwznpwfnhhv0h7qwy9jc7li752bq7hgmkh86qzyqz7k18zgx4iw"; depends=[MCMCpack qvalue]; }; fdrci = derive2 { name="fdrci"; version="2.2"; sha256="0q5m7h6zfbwv2ab8ab6p4d8y8ib24ryvmngyk564589dl2fwrn6q"; depends=[ggplot2]; }; @@ -9072,7 +9089,7 @@ in with self; { fec16 = derive2 { name="fec16"; version="0.1.3"; sha256="0azvrg98li535mqa2awhmfisfyfr4d8dw0ynikxmp0z1w9l3dx1p"; depends=[dplyr readr vroom]; }; fechner = derive2 { name="fechner"; version="1.0-3"; sha256="0bassigcipwlr2g8cdjh8jyhmb903k3hla9gnigcbz7qwzlfwa86"; depends=[]; }; federalregister = derive2 { name="federalregister"; version="0.2.0"; sha256="0qr8nd3ylnwcv1wxspw5i7ray5sh30zr648spg0lpqq8dp2b8p7b"; depends=[curl httr jsonlite]; }; - fedmatch = derive2 { name="fedmatch"; version="2.0.3"; sha256="1kxj0468sr3wv7byhviqz6cwn25sz41lrwhd168j1x6csjiakxgc"; depends=[BH data_table forcats magrittr purrr Rcpp scales SnowballC stringdist stringr]; }; + fedmatch = derive2 { name="fedmatch"; version="2.0.4"; sha256="0vc9ax9nh2wy3m1l7m2fhmp75kx7bf0i2g3zg5svz3579ygihar4"; depends=[BH data_table forcats magrittr purrr Rcpp scales SnowballC stringdist stringr]; }; fedregs = derive2 { name="fedregs"; version="1.0.0"; sha256="171j6r6qxnx9gk9x9gpdyh51ssrgmf7sczc4889qr3qqw15sm4bn"; depends=[dplyr httr magrittr purrr rvest stringi tidyr tidytext xml2]; }; fedstatAPIr = derive2 { name="fedstatAPIr"; version="0.1"; sha256="0ll86fp9kaddacsy9jfnwrq353kx4gny8vmxg8vnfx9kcl3bv95z"; depends=[dplyr httr jsonlite magrittr readsdmx rlang rsdmx rvest stringr xml2]; }; feisr = derive2 { name="feisr"; version="1.2.0"; sha256="012rspsw1xwl11gdr3nlpdmf24y9d2shwj81iqj1xill3l0mchwc"; depends=[aod dplyr Formula plm Rdpack]; }; @@ -9082,7 +9099,7 @@ in with self; { fergm = derive2 { name="fergm"; version="1.1.4"; sha256="1d979z2m5f13i1w9d8kh9rnaafavsap169w0nycpd5j2f3dfhyn7"; depends=[ergm extrafont ggplot2 matrixStats network reshape2 rstan]; }; fermicatsR = derive2 { name="fermicatsR"; version="1.4"; sha256="1587f67fypj22rdi1319zq765lcc9z518bzl1jr4lz6c8lrzfm9i"; depends=[]; }; ferrn = derive2 { name="ferrn"; version="0.0.1"; sha256="1zp18hfnvmdb2w0qj432yj9a3939lad2hqymrmj8y1w3k0razifk"; depends=[dplyr geozoo gganimate ggforce ggplot2 ggrepel magrittr purrr rlang scales stringr tibble tidyr tourr]; }; - ff = derive2 { name="ff"; version="4.0.4"; sha256="1rfj2ff5cxzdp9nvfnbgmswc1jvxz5vkxqgpv6gprwk32a0z3v12"; depends=[bit]; }; + ff = derive2 { name="ff"; version="4.0.5"; sha256="0dsh6llfdz04w94xr3yl2b4vkk9g3rwhvfnxcd025v2424krxfls"; depends=[bit]; }; ffbase = derive2 { name="ffbase"; version="0.13.3"; sha256="1dp6lblfq2j7r1b4b8ls47jlx8j27n88d5vp8w116lb8pa01zxmk"; depends=[bit fastmatch ff]; }; fflr = derive2 { name="fflr"; version="1.9.2"; sha256="0k8jsrq0nznx33bzl4abzs1dk740vqfrzc5g8mx291bv5g519qag"; depends=[httr jsonlite tibble]; }; ffmanova = derive2 { name="ffmanova"; version="1.1.0"; sha256="0019m9vxnh5yxr5k7zflzyhd533a842cjjkcpqyannshnrbfndvy"; depends=[]; }; @@ -9110,7 +9127,7 @@ in with self; { fic = derive2 { name="fic"; version="1.0.0"; sha256="18xz94w1ab17jfi61bdg9z3pm63g488v17ns2ivizkza4gg07pv8"; depends=[abind ggplot2 mvtnorm numDeriv scales survival tensor]; }; fidap = derive2 { name="fidap"; version="0.0.3"; sha256="0zq07395qx59xxb3cj5axhpkwnad2h88qbm3aan43q5cip9wi2bx"; depends=[httr jsonlite]; }; fieldRS = derive2 { name="fieldRS"; version="0.2.3"; sha256="0jr2l5cnrawd6wibmb6r0sngd851z9mbz4mwprnbbqbv3hzzrpm9"; depends=[caret concaveman geosphere ggplot2 raster rgeos sp stringdist vegan]; }; - fields = derive2 { name="fields"; version="12.5"; sha256="08jfqlz42vq23h2yq279cs2rva9fadi4q6cmk4dvixrmyprx5xyk"; depends=[maps spam viridis]; }; + fields = derive2 { name="fields"; version="13.3"; sha256="1hs4k5a9hh0r5fsrnpnvs6wvf78xpjzj8a2j6643dsz73a5q6ln6"; depends=[maps spam viridis]; }; fiery = derive2 { name="fiery"; version="1.1.3"; sha256="1rwnmm4n59wdsvb57bj8mx1qhz93jbvfb73sl111nwqazphrhid1"; depends=[assertthat crayon future glue httpuv later R6 reqres stringi uuid]; }; figpatch = derive2 { name="figpatch"; version="0.1.0.1"; sha256="1chshlyc3ygyvgzyph4mix3a6kvv4w0vbnss58472h0mgl7mgx8v"; depends=[ggplot2 magick patchwork]; }; file2meco = derive2 { name="file2meco"; version="0.1.0"; sha256="1lw3w8l2563ccvb4v0hj8qk96yam5p3rf0hcah6s93pyrz1mimyx"; depends=[ape dplyr magrittr Matrix microeco R6 rhdf5 tidyr yaml]; }; @@ -9141,7 +9158,7 @@ in with self; { fipe = derive2 { name="fipe"; version="0.0.1"; sha256="055jav8h4wws76jahm2d5dj49wkvzchh3f2vk5d50pny4dc7smar"; depends=[dplyr forcats furrr future httr jsonlite lubridate magrittr purrr readr stringr tibble tidyr]; }; fipio = derive2 { name="fipio"; version="1.0.0"; sha256="118gir8gnwip2hzf4q4vv96rkw050qmb0kv3hq2cwlfscbrwza9f"; depends=[]; }; fipp = derive2 { name="fipp"; version="1.0.0"; sha256="0wr3czwsqwa1bpdcjk0r1739vjanxc0fv0vnl3r5lgykrbhw9v3r"; depends=[matrixStats Rcpp RcppArmadillo]; }; - firebase = derive2 { name="firebase"; version="0.2.0"; sha256="1nf90j24zzkhrpxm18vcfb8h0rc6jsdy6iiw119nvh4qn2ridvrk"; depends=[cli jose openssl R6 shiny]; }; + firebase = derive2 { name="firebase"; version="0.2.1"; sha256="0w7mq0kkjvawvw0gss95j43kjzircs2j43zdkaly6v6qnpzgc036"; depends=[cli jose openssl R6 shiny]; }; firebehavioR = derive2 { name="firebehavioR"; version="0.1.2"; sha256="10krny60dkpgwjjnriap91qmrnfq1rl5ck4ynf4h6x016bv0m374"; depends=[ggplot2]; }; fishMod = derive2 { name="fishMod"; version="0.29"; sha256="0pbs4z27vwa3c42xdw3mr6l2i581bgvn2pk52kawbcnnlsff92ar"; depends=[]; }; fishbc = derive2 { name="fishbc"; version="0.2.1"; sha256="15mlr113qgndjhyry8img50jfk0si81kw2cdgl896b0g4djc5la3"; depends=[]; }; @@ -9173,7 +9190,7 @@ in with self; { fivethirtyeight = derive2 { name="fivethirtyeight"; version="0.6.2"; sha256="0nja8zbbkrxrvznyi1c38yzv6djx58ac5y4l1nkf07ph5d9i3k81"; depends=[]; }; fixedTimeEvents = derive2 { name="fixedTimeEvents"; version="1.0"; sha256="0z7ji8yzp4pj76ad64l7ivknkbi82ijx6abd3a18wicqhrh433sj"; depends=[]; }; fixerapi = derive2 { name="fixerapi"; version="0.1.6"; sha256="0ikf8dn0l9c9gshp4bph3wasl0bh6lfybinc8n1rvb202231hmgb"; depends=[jsonlite tibble tidyr]; }; - fixest = derive2 { name="fixest"; version="0.10.0"; sha256="108vsdsilyx4sykj1qzxmsvg395c13hq1jp53k3hgv1w8khhg9sp"; depends=[dreamerr nlme numDeriv Rcpp sandwich]; }; + fixest = derive2 { name="fixest"; version="0.10.1"; sha256="0gjzgchlcx8vmfbqg80xwj6azna5l7dw9l31bcybd2fg817mixvm"; depends=[dreamerr nlme numDeriv Rcpp sandwich]; }; fizzbuzzR = derive2 { name="fizzbuzzR"; version="0.1.1"; sha256="119gbi9y4n8r52hk9vj7zf795dv9xnk7lnngljjcd7ydnhygwd4h"; depends=[]; }; flacco = derive2 { name="flacco"; version="1.8"; sha256="15h2q9xgddy7gw6r52c2nk618f3z1mjn4xz9pzdvhm1d3kqggwa4"; depends=[BBmisc checkmate mlr]; }; flagr = derive2 { name="flagr"; version="0.3.2"; sha256="195c78cml2pjzfvpkaxbzcg1dfdqxi76138p0v3x3zzva9d8nlji"; depends=[]; }; @@ -9215,7 +9232,7 @@ in with self; { flipr = derive2 { name="flipr"; version="0.3.1"; sha256="1k6ykmj58c6vv8p1cn2wy9amlyxgrw3vphh97bv0pqqxyhnrlxjm"; depends=[cli dials ggplot2 magrittr optimParallel pbapply purrr R6 Rcpp rgenoud rlang tibble usethis viridisLite withr]; }; flipscores = derive2 { name="flipscores"; version="1.1.0"; sha256="0pznbv8gq6jx0hd9dq6yjxyz4p75h8x0jznfa02yh4xdzjmamiw6"; depends=[car flip MASS plyr]; }; float = derive2 { name="float"; version="0.2-6"; sha256="1bx5yxkb123001v31jjk7h7f0qissmjydvbil5cj3jvmqkayq1a1"; depends=[]; }; - flobr = derive2 { name="flobr"; version="0.2.1"; sha256="16qxsvpdznw0wlmcxc6jwf550hx7yx1rifds00lq0kxly1pc4aak"; depends=[blob chk lifecycle]; }; + flobr = derive2 { name="flobr"; version="0.2.2"; sha256="1khl7zld1fwigk20sl5ibacyrbln40pkfqpzpxj6si7m1q6yvv1a"; depends=[blob chk lifecycle]; }; flock = derive2 { name="flock"; version="0.7"; sha256="1zg93p74icj4bhxnmnssj2xp6vw4yaksyavq03497v33xfpdxss7"; depends=[Rcpp]; }; flood = derive2 { name="flood"; version="0.1.1"; sha256="0nlmjh2l7dij1aqd70hhj0m550knlin3am14azqkx4pacs1kir3p"; depends=[copula evd magrittr TLMoments]; }; flora = derive2 { name="flora"; version="0.3.4"; sha256="17drlfvvrndal4cf5nw20xb9viybagvb4vll1kxdrhvsvfz5yap6"; depends=[dplyr httr jsonlite stringdist]; }; @@ -9320,7 +9337,7 @@ in with self; { fractD = derive2 { name="fractD"; version="0.1.0"; sha256="1cnp8qrc6jpdj0grwkvn5jkdymjfhg5ybbhqvknxirc4g981q8bj"; depends=[imager plyr]; }; fractaldim = derive2 { name="fractaldim"; version="0.8-5"; sha256="1hi5xzya528947wfb50brl00m6n6krv4sn5nzga285nncf6xprhh"; depends=[abind]; }; fractional = derive2 { name="fractional"; version="0.1.3"; sha256="1jz83y53s0xdphh1z3v3z7xhcmhx7rp0iiazw2vdsx2747r3rirn"; depends=[Rcpp]; }; - fracture = derive2 { name="fracture"; version="0.1.3"; sha256="0zhal8i6bxmif90yyynd7mhdnfb8f4hv4zs421r8ky4wr90ki429"; depends=[Rcpp]; }; + fracture = derive2 { name="fracture"; version="0.2.0"; sha256="18dyq1g9b8gpac5xjry9hkmql5fmwyyghkmrrgkrrvy42q8ygn91"; depends=[Rcpp]; }; fragility = derive2 { name="fragility"; version="1.1"; sha256="0gjxc4bykqjmj54mxjh27bzkbf8ydrzzzlb7xnq9jljmr139zhyk"; depends=[metafor netmeta plotrix]; }; frailtyEM = derive2 { name="frailtyEM"; version="1.0.1"; sha256="0ajqmn8353va8k3idsl90xsrhpdqarfmvg84d4kwayxlqy6dmbb0"; depends=[expint ggplot2 magrittr Matrix msm numDeriv Rcpp survival tibble]; }; frailtyHL = derive2 { name="frailtyHL"; version="2.3"; sha256="115iv1d2c9mvviick8b24bn6kdbsvnf21nvfjm9a8dk0x07hrv5g"; depends=[cmprsk Matrix survival]; }; @@ -9395,7 +9412,7 @@ in with self; { fulltext = derive2 { name="fulltext"; version="2.0"; sha256="104wkas9azyb2drfaz1hrgbx2ilbb0k2mb8411l10rsbkqva099f"; depends=[aRxiv crul data_table digest fauxpas hoardr jsonlite magrittr microdemic pdftools rcrossref rentrez rplos storr tibble xml2]; }; fun = derive2 { name="fun"; version="0.3"; sha256="09601ma4irmpkgjspq6zmr383m1pbgyfdkf7gw8w8gp0q7ab89aq"; depends=[]; }; funData = derive2 { name="funData"; version="1.3-8"; sha256="146mnv09mbjr7vwvwlds1jc91vzbj7df0kb70qmiav0a8bvslngi"; depends=[abind fields foreach]; }; - funFEM = derive2 { name="funFEM"; version="1.1"; sha256="08798lvryykrxfvp2297anzl4gi81gwvc1qyyzq16nafjf65kwfy"; depends=[elasticnet fda MASS]; }; + funFEM = derive2 { name="funFEM"; version="1.2"; sha256="17pw743qnljwasj4cg8m8sg9j6piy7g69jr57aqmbizlfdqvvl05"; depends=[elasticnet fda MASS]; }; funGp = derive2 { name="funGp"; version="0.2.2"; sha256="1khdnxr7gsswv0v867anh12ah7whqmv9q9i06w1axv13jrriwbac"; depends=[doFuture foreach future knitr microbenchmark progressr qdapRegex scales]; }; funHDDC = derive2 { name="funHDDC"; version="2.3.1"; sha256="1fd3n3y5icm2lcdz5jzfybbbmmzbbgq949x1g4bx4s0h0dnc0rkk"; depends=[fda MASS]; }; funLBM = derive2 { name="funLBM"; version="2.2"; sha256="0krv0cid34rgcik0hk1fhvsi3cbc19scgsnssczfb0c79jkxy3cw"; depends=[abind fda funFEM ggplot2]; }; @@ -9426,7 +9443,7 @@ in with self; { futile_options = derive2 { name="futile.options"; version="1.0.1"; sha256="0w15agpi88y3qkv6fl72zy2pzyplzgvnj41a4ixhg64mw1sck73s"; depends=[]; }; futile_paradigm = derive2 { name="futile.paradigm"; version="2.0.4"; sha256="14xsp1mgwhsawwmswqq81bv6jfz2z6ilr6pmnkx8cblyrl2nwh0v"; depends=[futile_options RUnit]; }; futility = derive2 { name="futility"; version="0.4"; sha256="0zjb87brz7pkx3nq3q30y69cmcxpqqsra447p60qh7005kgr9vx4"; depends=[]; }; - future = derive2 { name="future"; version="1.22.1"; sha256="1kgdpfipnwi15wz2xvlfg3bmq424hhjzja5bks01v3phra2lmcl7"; depends=[digest globals listenv parallelly]; }; + future = derive2 { name="future"; version="1.23.0"; sha256="1y5qzpsg0r2dccynyybbb2ngxbl1y3phs1dq2jj3f2bwhc7chsfq"; depends=[digest globals listenv parallelly]; }; future_apply = derive2 { name="future.apply"; version="1.8.1"; sha256="1ix61bfbk43pwnjb0wk8lkfgdsy5zi8svk74gar5nrl90b5w6nqd"; depends=[future globals]; }; future_batchtools = derive2 { name="future.batchtools"; version="0.10.0"; sha256="1ly98h2g7wpfxp2r8vl1hy7wqqgwgawjagz0m2iczjmcj4ix6avk"; depends=[batchtools future]; }; future_callr = derive2 { name="future.callr"; version="0.6.1"; sha256="037xgv604vrbdqx4zbai8nqd2d9cf47f0rwxd7iihr09y8qknd19"; depends=[callr future]; }; @@ -9525,6 +9542,7 @@ in with self; { garchx = derive2 { name="garchx"; version="1.3"; sha256="0fpanzl6nfq6dar5chmqqfndb3w01mcypkhj0ya6v3d77m02b5mf"; depends=[zoo]; }; gargle = derive2 { name="gargle"; version="1.2.0"; sha256="0fypj70c1fjmvs57birik76wfx8a2fs4gzicbb52k57i6clwlijd"; depends=[cli fs glue httr jsonlite rappdirs rlang rstudioapi withr]; }; gargoyle = derive2 { name="gargoyle"; version="0.0.1"; sha256="0lsjplfrc047lb3zjfsc8wl47kll7d85v824k7zlr0n34xbbypq7"; depends=[attempt shiny]; }; + garma = derive2 { name="garma"; version="0.9.10"; sha256="1a6j1ym4rn4bvnh6b17gczg9x7f8gvmjw094694smkw0js5v7ig8"; depends=[BB crayon dfoptim FKF forecast GA ggplot2 lubridate nloptr pracma pso Rsolnp signal tswge zoo]; }; garray = derive2 { name="garray"; version="1.1.2"; sha256="0s2dgi556x9jnhafvzz4qkxdbq9dm12gsvsqd2g9iy3468fx9flq"; depends=[]; }; gaselect = derive2 { name="gaselect"; version="1.0.9"; sha256="089gyllcmq5rgf5yffclifc7rc8rmq4wk1dhznigxkij4zap67hx"; depends=[Rcpp RcppArmadillo]; }; gasfluxes = derive2 { name="gasfluxes"; version="0.4-4"; sha256="0gi0zk0h5rw75n6znada0cwa9qzy8higsiiqwgdm3q827j1x8iva"; depends=[AICcmodavg data_table MASS sfsmisc]; }; @@ -9563,9 +9581,9 @@ in with self; { gcmr = derive2 { name="gcmr"; version="1.0.2"; sha256="0mh542na2byb4aha548lfkzllfnk4rmzcm23jm6642pndvxpnfmj"; depends=[betareg car Formula lmtest nlme sandwich sp]; }; gconsensus = derive2 { name="gconsensus"; version="0.3.1"; sha256="0zray67q5saqs4n3k2v3hm7ly7hpfibvpvlzvqfhbfj98accm7in"; depends=[coda MASS rjags]; }; gcookbook = derive2 { name="gcookbook"; version="2.0"; sha256="11g1q187l4j31b6cdzdx5z3s14z3s09l7ynl36pzzn9j19l8cmrc"; depends=[]; }; - gdalUtilities = derive2 { name="gdalUtilities"; version="1.1.2"; sha256="1vw30gnmn3vrghm3n0yqs5swz7a3d07n0zd5flgiqrlya35hlhsc"; depends=[raster sf]; }; + gdalUtilities = derive2 { name="gdalUtilities"; version="1.2.0"; sha256="0nxnw9azlml13a6rqhxjrwq8v7fb2pjcb07dp5r2p5bzyzvldm7a"; depends=[sf]; }; gdalUtils = derive2 { name="gdalUtils"; version="2.0.3.2"; sha256="0krapdy50nd5dvcdflz39dzxpig3zklng3hgxavqg2nvwazalvsc"; depends=[foreach R_utils raster rgdal sp]; }; - gdalcubes = derive2 { name="gdalcubes"; version="0.4.1"; sha256="1sckd2sqcf0fklr8qdwkalri3xdagrhxd0bw3jisb2wqwvdxjjzw"; depends=[jsonlite ncdf4 Rcpp RcppProgress]; }; + gdalcubes = derive2 { name="gdalcubes"; version="0.5.0"; sha256="074vidv9ccklbvfhfyzwr0pfqdvh9bdbh9xwlrd6bxbd0q4sq8gk"; depends=[jsonlite ncdf4 Rcpp RcppProgress]; }; gdata = derive2 { name="gdata"; version="2.18.0"; sha256="0zwdj7lscgxr8r62ii8hbdh4mb7sa9w4f5nv32zzrxdvymcpya2b"; depends=[gtools]; }; gde = derive2 { name="gde"; version="0.1.4"; sha256="1ypax1gwi8f9fkfmbm5qb845b70ch44m19rw8spi34fn3yrbb17l"; depends=[data_table DBI dplyr DT ggplot2 httr jsonlite leaflet odbc progress R_utils readr rgbif shiny shinycssloaders shinyWidgets stringr XML]; }; gdiff = derive2 { name="gdiff"; version="0.2-2"; sha256="0hg9mf3qyg19wwpiv3lz2z1000jw73s2pwb8y8hjgpv69wwsskfi"; depends=[magick pdftools]; }; @@ -9593,6 +9611,7 @@ in with self; { gems = derive2 { name="gems"; version="1.1.1"; sha256="174mjnpldb0rwjvwdgpcg1acm526gs0pjf9gi5mn9d3x9yz4r5jx"; depends=[data_table MASS msm plyr]; }; gemtc = derive2 { name="gemtc"; version="1.0-1"; sha256="150892ybxkci8frnjj070qzc1sqx5a9ba2r6n8mii12hgrz4h1vm"; depends=[coda forcats igraph meta plyr Rglpk rjags truncnorm]; }; gen2stage = derive2 { name="gen2stage"; version="1.0"; sha256="16xbzgkjskzm1wik3dznvwhqddrpmcgsgd372n4a67rbb46jgx6r"; depends=[clinfun]; }; + gen3sis = derive2 { name="gen3sis"; version="1.4"; sha256="00zfxgvh204x759p2bjdi7wwxwp7c9gvl0p8v9c7zh8gkg2767pz"; depends=[BH gdistance Matrix raster Rcpp sp stringr]; }; gen5helper = derive2 { name="gen5helper"; version="1.0.1"; sha256="0z7hisn57md18vcfb6f44hy6zzp9dirrjyxi4x1id3mqa3mligb6"; depends=[dplyr ggplot2 minpack_lm naturalsort plyr pracma rlang tidyr]; }; genBaRcode = derive2 { name="genBaRcode"; version="1.2.4"; sha256="1y7rq2fvv2s7x054ribp2x6vsp8dh49dm43rhn9cp2fn4qf05f7r"; depends=[ape Biostrings dplyr futile_logger future future_apply ggnetwork ggplot2 ggraph ggseqlogo ggtree igraph network phangorn RColorBrewer reshape2 S4Vectors shiny ShortRead stringdist VennDiagram visNetwork]; }; genSEIR = derive2 { name="genSEIR"; version="0.1.1"; sha256="02lprxxpf7ll23habq05b6slgbh978k09sqr6myr2jhlax2snxvk"; depends=[ggplot2 minpack_lm nlsr pracma]; }; @@ -9617,7 +9636,7 @@ in with self; { generalCorr = derive2 { name="generalCorr"; version="1.1.9"; sha256="1x0nh1z9vf68vyvdrv100rrpyabb2iwxn7p369zx950i47qy9a45"; depends=[lattice meboot np psych xtable]; }; generalhoslem = derive2 { name="generalhoslem"; version="1.3.4"; sha256="0fmfhmdb16gf3v9h50vif4f3f6bm03qq7wplnmzyxa80jb60fcc0"; depends=[MASS reshape]; }; generator = derive2 { name="generator"; version="0.1.0"; sha256="0xjvnmnpdms8rrxxcz6pd8w4rnbv3ghzqv4m63zxia2l98x7z4rf"; depends=[]; }; - generics = derive2 { name="generics"; version="0.1.0"; sha256="0qw7r0d2qvlj1pvrlpv30d6akml624ydxkk19hv85iv6pfyx2wdb"; depends=[]; }; + generics = derive2 { name="generics"; version="0.1.1"; sha256="04hrn6g5m5vi3znrcha3jw2q16lnmm3ygx2jl5aqiahg3azqwix2"; depends=[]; }; genero = derive2 { name="genero"; version="0.1.0"; sha256="0akwwy5xbh7s40v8dr1zr7jfglv0iyh4zn0sb0rnz4r57qr6nh8w"; depends=[]; }; genesysr = derive2 { name="genesysr"; version="1.0.0"; sha256="05jp8z7313r5wi9a5yw7fh198l7nd2ywzwg4f23yp4kfrkkgawn5"; depends=[dplyr httr jsonlite]; }; geneticae = derive2 { name="geneticae"; version="0.1.0"; sha256="0d37g33xkaym49zq6aqv4xj40hm25qbr7y080vka8nid7n29y7f7"; depends=[agridat bcv calibrate dplyr GGEBiplots ggforce ggplot2 MASS matrixStats missMDA pcaMethods prettydoc reshape2 rrcov scales tidyr]; }; @@ -9643,9 +9662,11 @@ in with self; { genscore = derive2 { name="genscore"; version="1.0.2"; sha256="0i1wg65cpyc7x1h8dbq0i6q8979lw15zhmn7zn1r8gj3nxl7my0b"; depends=[mvtnorm Rdpack stringr tmvtnorm]; }; genset = derive2 { name="genset"; version="0.1.0"; sha256="02zldi136sfnq1i8pwb3b97zd44pjdgnfadk4bqp36wm8x95phwi"; depends=[]; }; gensphere = derive2 { name="gensphere"; version="1.3"; sha256="0cf1xmwi32x3ga9m5k7a93vdwix84ny7wxb74mddmfvb3m1v4c7g"; depends=[geometry mvmesh rgl SimplicialCubature SphericalCubature]; }; + genstab = derive2 { name="genstab"; version="1.0.0"; sha256="09kg70v8qj8rbqwk0zm3xg54pmrr26l8n1s9x26s8qrsns0dgz0x"; depends=[]; }; gensvm = derive2 { name="gensvm"; version="0.1.5"; sha256="1r0f3l6df1sn3vx5sjssx8p35lw100q0qz6v1fckdfw04z53g4im"; depends=[]; }; - geoBayes = derive2 { name="geoBayes"; version="0.6.3"; sha256="153a7kp73wxm5hzzq038p3mnykhakv0c9qa8fpbjijccmbi89970"; depends=[coda optimr sp]; }; + geoBayes = derive2 { name="geoBayes"; version="0.7.0"; sha256="0bjr77ifmpf5y560iwzm0sv8mkvz6c4isn78gmdy6m8531b11frh"; depends=[coda optimx sp]; }; geoFKF = derive2 { name="geoFKF"; version="0.1.0"; sha256="0fapxfckyhgs1lzaviicnrhmjzdlkxfg2ccn46zcrybqq995g9js"; depends=[numDeriv Rcpp RcppArmadillo]; }; + geoFourierFDA = derive2 { name="geoFourierFDA"; version="0.1.0"; sha256="1a5ggjyfj5ic9h7fqvy3r7s0i6bmbwk95bf7y3vrmmmj0sxdm1mf"; depends=[magrittr orthopolynom Rcpp RcppArmadillo]; }; geoGAM = derive2 { name="geoGAM"; version="0.1-2"; sha256="0q09pk2npn4hjymklwfrhz2ybmjpcb6kvqkpn9l3a6cdjgk6bkmj"; depends=[grpreg MASS mboost mgcv]; }; geoR = derive2 { name="geoR"; version="1.8-1"; sha256="1lvgkpvv4a05lsb1dgphpv733lxbpcj7p2bj1yjjbfch8n04f1lr"; depends=[MASS RandomFields sp splancs]; }; geoSAE = derive2 { name="geoSAE"; version="0.1.0"; sha256="16fkai95cqwxkylpk1gddyzja80036ghfb4ps3rz1vbbqzhg01x8"; depends=[MASS nlme]; }; @@ -9664,7 +9685,7 @@ in with self; { geofabrik = derive2 { name="geofabrik"; version="0.1.0"; sha256="0k92gmivccw3kbgkb9bjw7pxc4zc3zdj35x0cbzmjq0k3qxq8ad0"; depends=[]; }; geofacet = derive2 { name="geofacet"; version="0.2.0"; sha256="1aylx2hwqk75y73az1zf0s5mjww77d7i9kafbkzw383f0i5qx42w"; depends=[geogrid ggplot2 ggrepel gridExtra gtable imguR rnaturalearth sf sp]; }; geofd = derive2 { name="geofd"; version="2.0"; sha256="1rsgy4nxfp1gi4vwh8zfzksr6sr2ga31kmd56q5m56gw530570ra"; depends=[fda]; }; - geofi = derive2 { name="geofi"; version="1.0.4"; sha256="1j1b1j1ld1zjj88k9xwa412v7xjjp0jv76g2yljlq7pq3970n6i9"; depends=[curl dplyr httpcache httr purrr rlang sf xml2 yaml]; }; + geofi = derive2 { name="geofi"; version="1.0.5"; sha256="06d0nr42gdb5lm3kcrx2jacdpl26m1wrqsvc85w87ff7rxgp145s"; depends=[curl dplyr httpcache httr purrr rlang sf xml2 yaml]; }; geogrid = derive2 { name="geogrid"; version="0.1.1"; sha256="0b8afwgj9x56z6zh525y7qkiwbv77mjcw3v19kfba0426jn4vi87"; depends=[Rcpp RcppArmadillo rgeos sf sp]; }; geohashTools = derive2 { name="geohashTools"; version="0.3.1"; sha256="0ks6ga1vsp5z7sy0xcq9nacffmfsx6yqdlnhqflsb8zb9qbygazf"; depends=[]; }; geojson = derive2 { name="geojson"; version="0.3.4"; sha256="0fvlw06hjb7z0mfsf8vhv1dchdjlvklyzjqlaydjzbwb1kvbhpq7"; depends=[jqr jsonlite lazyeval magrittr protolite sp]; }; @@ -9688,7 +9709,7 @@ in with self; { geonetwork = derive2 { name="geonetwork"; version="0.4.1"; sha256="04vf39hxl1a2kbgqc054xg9w6hbd3fwag6sy0j8a9agrd5wgks7h"; depends=[geosphere igraph rgdal sf sp]; }; geophys = derive2 { name="geophys"; version="1.4-1"; sha256="1s64sbr0chv0z2vaw059khfkv8iga1kr6428kkglgafq5x2d6h3q"; depends=[cluster GEOmap RFOC RPMG RSEIS]; }; georob = derive2 { name="georob"; version="0.3-14"; sha256="1an5mxq49kv038dplm9h6ngvsz71lkvjm34i7jjsdpaz3cyflp7v"; depends=[abind constrainedKriging fields lmtest nleqslv nlme quantreg RandomFields robustbase snowfall sp]; }; - geos = derive2 { name="geos"; version="0.1.1"; sha256="18b52rmf8sgx2hxj50918v0ql8wlrnw6kyx3vrykb144cm98w6d5"; depends=[libgeos wk]; }; + geos = derive2 { name="geos"; version="0.1.2"; sha256="04ha875a416fdw2ki0iilal2blnblf0hdda5n5msa5gi70ycd3db"; depends=[libgeos wk]; }; geosapi = derive2 { name="geosapi"; version="0.5-1"; sha256="0ny1nzhfwj9l3gyzls3ksikmjzx06a3420nb3l6b2711v9zymv45"; depends=[httr keyring openssl R6 XML]; }; geoscale = derive2 { name="geoscale"; version="2.0"; sha256="0gisds0in32xhw54fxfyxvwxgrfjs871wmqf6l915nr896rlx0bm"; depends=[]; }; geosed = derive2 { name="geosed"; version="0.1.1"; sha256="07j4q6sgrf83h2gi2j5qap5rifz8gimdacd3b7ld1p3b6ai6kv3r"; depends=[]; }; @@ -9754,7 +9775,7 @@ in with self; { ggRandomForests = derive2 { name="ggRandomForests"; version="2.0.1"; sha256="0f8m0j79d8wbac14zk1s8812rz6vgf04bz1iqq8p4d3sxwnvaj7q"; depends=[ggplot2 randomForest randomForestSRC survival tidyr]; }; ggResidpanel = derive2 { name="ggResidpanel"; version="0.3.0"; sha256="1vsjw229pd36100ix1sgfmk5lb9b0fx3l6pxg1irsfhm2ypbg1ig"; depends=[cowplot ggplot2 MASS plotly qqplotr stringr]; }; ggThemeAssist = derive2 { name="ggThemeAssist"; version="0.1.5"; sha256="1biw91a8p13h62v4w3yim6ghr98khmyhb3qd0h04asf91vvmpxbv"; depends=[formatR ggplot2 miniUI rstudioapi shiny]; }; - ggVennDiagram = derive2 { name="ggVennDiagram"; version="1.1.4"; sha256="0657qql1spnj6giyj7f1gi28fw06nl23qxrir88d49ddbv1rn8ab"; depends=[dplyr ggplot2 magrittr plotly purrr RVenn sf stringr tibble]; }; + ggVennDiagram = derive2 { name="ggVennDiagram"; version="1.2.0"; sha256="1mjs488npnxd53nsw936iw2vzv7z38h8d02pm4lwrz4i83jg3www"; depends=[dplyr ggplot2 magrittr plotly purrr RVenn sf stringr tibble]; }; ggalignment = derive2 { name="ggalignment"; version="1.0.0"; sha256="07f1l7pav36i2z75bvwcwkamw5i36fh5klh5djglxnq1a3v8jm79"; depends=[dplyr ggimage ggplot2 magrittr rlang]; }; ggallin = derive2 { name="ggallin"; version="0.1.1"; sha256="0hrxa7m07ppvnndivxcgxksdyblb6fw17aw46maqavlvcrz3fjgm"; depends=[ggplot2 scales]; }; ggalluvial = derive2 { name="ggalluvial"; version="0.12.3"; sha256="0mkan9gxg3yxjism22yxbhvlh2lh7wpbrqpb355za790prcmjbh3"; depends=[dplyr ggplot2 lazyeval rlang tidyr tidyselect]; }; @@ -9764,7 +9785,7 @@ in with self; { ggasym = derive2 { name="ggasym"; version="0.1.6"; sha256="1vgsqq2m4w5clmf27mmj6jqn2s8m1izz3gj2bxqpmdcvzf5vxkgr"; depends=[dplyr ggplot2 magrittr purrr rlang scales stringr tibble tidyr]; }; ggbeeswarm = derive2 { name="ggbeeswarm"; version="0.6.0"; sha256="0crk29p5vi1r3a988kms4y7r0iqwgwzsikgvh18r9wbzyr98bb5v"; depends=[beeswarm ggplot2 vipor]; }; ggborderline = derive2 { name="ggborderline"; version="0.1.0"; sha256="02m7g0fmayp0zscj3x167n96cj6kn62a8nw67d42k6p74bard2sy"; depends=[ggplot2 scales]; }; - ggbreak = derive2 { name="ggbreak"; version="0.0.6"; sha256="13f60i6qs880mv7wh39c0wpakbid21jr2dxvvrx6kskqyf24b1jb"; depends=[aplot ggfun ggplot2 ggplotify rlang]; }; + ggbreak = derive2 { name="ggbreak"; version="0.0.7"; sha256="14cs0fni67gidkkaflqvckgqbi4hjwxpzwyv6p8h2dxy8n5m6x92"; depends=[aplot ggfun ggplot2 ggplotify rlang]; }; ggbuildr = derive2 { name="ggbuildr"; version="0.1.0"; sha256="0pld635v6fv46ky7s4icwxlcnr7z6bp5ikf20adpkljwhy0wwxak"; depends=[ggplot2 purrr readr]; }; ggbump = derive2 { name="ggbump"; version="0.1.0"; sha256="15cnzv2q3gylkmd1zj044cp14ldnkc4fzwmxaqpc8cagwf9i10zk"; depends=[dplyr ggplot2 purrr tidyr]; }; ggcharts = derive2 { name="ggcharts"; version="0.2.1"; sha256="1c0gdn8skkm82f3qxv9551l36zwqcga9b9sbc48q8hp71ay4ac6b"; depends=[colorspace dplyr ggplot2 lifecycle magrittr patchwork rlang]; }; @@ -9777,25 +9798,25 @@ in with self; { ggdendro = derive2 { name="ggdendro"; version="0.1.22"; sha256="0skbj487b6f6pj2iz4yq2b9gbgb39cv5dyzhdl3w7ay1k0s5z9ph"; depends=[ggplot2 MASS]; }; ggdist = derive2 { name="ggdist"; version="3.0.0"; sha256="08rkqagwx1673fyckv37fy7wf0yklsddpxbmx8k15v2rbfbac8d9"; depends=[distributional dplyr ggplot2 HDInterval rlang scales tibble tidyselect vctrs withr]; }; ggdmc = derive2 { name="ggdmc"; version="0.2.6.0"; sha256="1gncv7npl548k3zd41x2gwg5qywn5rp6zb4i7ga78sy77mvi3x92"; depends=[coda data_table ggplot2 matrixStats Rcpp RcppArmadillo]; }; - gge = derive2 { name="gge"; version="1.6"; sha256="0l5xhbn3wdvsmr8gavj8r3yn8mcfw21pmzdfy4wygqa6jamcsr59"; depends=[nipals reshape2]; }; + gge = derive2 { name="gge"; version="1.7"; sha256="1lis0w4n0fns1fsl95p1pbvbqkb3vlwzb5pk5hqlzadjrnrs6gzw"; depends=[nipals reshape2]; }; ggeasy = derive2 { name="ggeasy"; version="0.1.3"; sha256="0zp9jhm8vc1gpja5s6g92snd1jnskadafc226l51y8cps7lj8f6q"; depends=[ggplot2 rlang]; }; ggedit = derive2 { name="ggedit"; version="0.3.1"; sha256="10fbjqq6l7wfibi65mq423w7v8gymr541if749qhsnd9b2jyhaj5"; depends=[colourpicker dplyr ggplot2 magrittr miniUI plyr purrr rlang rstudioapi scales shiny shinyAce shinyBS tidyr]; }; ggeffects = derive2 { name="ggeffects"; version="1.1.1"; sha256="0xrb105kblkj3l9zlj9yy52rjlmx5x2aai1wwb5zvjr1f6nlc84l"; depends=[insight MASS sjlabelled]; }; ggenealogy = derive2 { name="ggenealogy"; version="1.0.1"; sha256="19six9ln1yaqv268abm9qvb61nl8zdz3gghwr8hmwsa94xwhzhkq"; depends=[ggplot2 igraph plotly plyr reshape2 tibble]; }; ggetho = derive2 { name="ggetho"; version="0.3.6"; sha256="1iv0vad8y85bvz8rx0flqyrb38d79j9fhmd6ay5siyccigi88clj"; depends=[behavr data_table ggplot2 labeling rlang scales stringr]; }; + ggfacto = derive2 { name="ggfacto"; version="0.2.2"; sha256="0rxqkhmnzpljcdbg5wzmyq5fivd3d2h1903w8d1cblq7xw969xi0"; depends=[dplyr FactoMineR forcats ggiraph ggplot2 ggrepel gridExtra htmlwidgets kableExtra magrittr purrr rlang stringi stringr tabxplor tibble tidyr tidyselect vctrs widgetframe]; }; ggfan = derive2 { name="ggfan"; version="0.1.3"; sha256="1p3hbznpsaznlk0lnjyazc130www0p5919qplg3kspng7qh8p22w"; depends=[colorspace dplyr ggplot2 rstan]; }; ggfittext = derive2 { name="ggfittext"; version="0.9.1"; sha256="0yckj6awx42yrlv7lfq9jplnzqv5lpvgmb0327bx14pc3q36055f"; depends=[ggplot2 shades stringi]; }; ggfocus = derive2 { name="ggfocus"; version="1.0.0"; sha256="03q0rz7flm8sc8hrlkcm5fz66qiyxb8z8q4bh9dglhw0jc8q1fvb"; depends=[dplyr ggplot2 magrittr RColorBrewer rlang]; }; ggforce = derive2 { name="ggforce"; version="0.3.3"; sha256="0bwzjbjl678xvc2ihm80dwn9pidwafqjdab3k299csys16s3na1a"; depends=[ggplot2 gtable MASS polyclip Rcpp RcppEigen rlang scales tidyselect tweenr withr]; }; ggformula = derive2 { name="ggformula"; version="0.10.1"; sha256="1ph5jd8svk8hmshi894vmmpq3zwgdmf4yn3gmdlkad68z8jynhsp"; depends=[ggforce ggplot2 ggridges ggstance labelled magrittr mosaicCore rlang scales stringr tibble]; }; - ggfortify = derive2 { name="ggfortify"; version="0.4.12"; sha256="13f3ggn94czw7xw5qxwrdncr2h7z7bvwgw8zxni8wkc8x3kbz5rd"; depends=[dplyr ggplot2 gridExtra scales stringr tibble tidyr]; }; + ggfortify = derive2 { name="ggfortify"; version="0.4.13"; sha256="0qls8pyndrlwx75wzlc0xmk04qq263d7065r3d6kvay7haa4nm40"; depends=[dplyr ggplot2 gridExtra scales stringr tibble tidyr]; }; ggfun = derive2 { name="ggfun"; version="0.0.4"; sha256="07njcjcj212zxanq8x3nkh7mgvqmym08rx5s41rz9flhk9gkc9jr"; depends=[ggplot2 rlang]; }; ggfx = derive2 { name="ggfx"; version="1.0.0"; sha256="1q9ppp88yj6lplj7wxnf18aa7a8f5iz35765bdfhsrkdxlrkny7h"; depends=[ggplot2 gtable magick ragg rlang]; }; gggap = derive2 { name="gggap"; version="1.0.1"; sha256="1iidxm7qcrg0isw2q27cmjbfb3pkfj5jcg1nj8lgy6xmydw3vrw3"; depends=[cowplot ggplot2]; }; gggenes = derive2 { name="gggenes"; version="0.4.1"; sha256="1s4knz2g06w46jbi037l9ii0kkxvl7gnljp54s4z36hnswsrv8jk"; depends=[ggfittext ggplot2 rlang]; }; ggghost = derive2 { name="ggghost"; version="0.2.1"; sha256="0kvsjadxxdf6yvzk4a6yqkg02q1ysslvf3m0a369bdim396z4hnv"; depends=[animation ggplot2]; }; gggibbous = derive2 { name="gggibbous"; version="0.1.1"; sha256="1sy9d9hl04b13yz4563bzsdznjdh3xmikdrsqg8kdv8wn481lqbd"; depends=[ggplot2 scales]; }; - ggguitar = derive2 { name="ggguitar"; version="0.1.1"; sha256="1lmfs54h91gzcxin37v4flkywbq3fs648mm1h9ak03xlj5nagzsi"; depends=[dplyr ggplot2 gridExtra lazyeval readr tibble]; }; ggh4x = derive2 { name="ggh4x"; version="0.2.0"; sha256="0gv9ckkdqbcjknzsv8h3955wnikawdfypr279v74hvwyq86af29r"; depends=[ggplot2 gtable rlang scales vctrs]; }; gghalfnorm = derive2 { name="gghalfnorm"; version="1.1.2"; sha256="1sy0m6pqmnjbqv60rljyblhis0dxwkhw751jhlad5arcgrcwf4k8"; depends=[ggplot2 ggrepel]; }; gghalves = derive2 { name="gghalves"; version="0.1.1"; sha256="1w4j8grir1i8ar7fdsk4f6czkl5j2wwn67y746mis2diwnzhcil3"; depends=[ggplot2 gtable]; }; @@ -9842,7 +9863,7 @@ in with self; { ggplotgui = derive2 { name="ggplotgui"; version="1.0.0"; sha256="1yfglg5438mwyml845isimzma5q6824x19jka509ng49bzmf1za0"; depends=[ggplot2 haven plotly RColorBrewer readr readxl shiny stringr]; }; ggplotify = derive2 { name="ggplotify"; version="0.1.0"; sha256="12mk3fa8fdjxj7xxz21jkr7h91w5wdgwjqhszcz1qffwsgb773qp"; depends=[ggplot2 gridGraphics yulab_utils]; }; ggplotlyExtra = derive2 { name="ggplotlyExtra"; version="0.0.1"; sha256="1m2rhylpzj934gb50lxjp47rxz0kwl9i1p3n7w1rz4qi96pr5p1c"; depends=[ggplot2 plotly rlang]; }; - ggpmisc = derive2 { name="ggpmisc"; version="0.4.3"; sha256="0ff84ybj4648c1v05ng3l62g9n52igjwvm320qkfbdzdxzncpzik"; depends=[dplyr generics ggplot2 ggpp lmodel2 lubridate MASS plyr polynom quantreg rlang scales splus2R tibble]; }; + ggpmisc = derive2 { name="ggpmisc"; version="0.4.4"; sha256="01dnr2a33zmgi0gjsxlcz4hp68b18xsi8z1lkhgcla5im59qf9xi"; depends=[dplyr generics ggplot2 ggpp lmodel2 lubridate MASS plyr polynom quantreg rlang scales splus2R tibble]; }; ggpointdensity = derive2 { name="ggpointdensity"; version="0.1.0"; sha256="0c9a14j3b0hvamqylhzldw2hjdxmfbllwahjkf3gg2rw337ld9iy"; depends=[ggplot2]; }; ggpol = derive2 { name="ggpol"; version="0.0.7"; sha256="11xr26kwmkjjb51wm44ydv0vcinc6k6faqwx4s2faj4iwidlys1m"; depends=[dplyr ggplot2 glue gtable plyr rlang tibble]; }; ggpolypath = derive2 { name="ggpolypath"; version="0.1.0"; sha256="0g9zfal3vqcx16fi4abxm6l5sam475lk1f6bdik487wc2v0dkq83"; depends=[ggplot2]; }; @@ -9851,7 +9872,7 @@ in with self; { ggpubr = derive2 { name="ggpubr"; version="0.4.0"; sha256="0x86lmghr25k8w90yrp360dn42dhp5cjvjpdiv2s2gxfn701xcmb"; depends=[cowplot dplyr ggplot2 ggrepel ggsci ggsignif glue gridExtra magrittr polynom purrr rlang rstatix scales tibble tidyr]; }; ggpval = derive2 { name="ggpval"; version="0.2.4"; sha256="0zi3k79iy8pwnrgi9r9l4r9ghv1db9cxsagif8wsrlak4nr8akza"; depends=[data_table ggplot2]; }; ggquickeda = derive2 { name="ggquickeda"; version="0.2.1"; sha256="1yql17wla60lg713cd4kr4906i4ngkvyg0s962zpri76g2z3acvv"; depends=[colourpicker dplyr DT Formula GGally ggbeeswarm ggplot2 ggpmisc ggpubr ggrepel ggstance gridExtra Hmisc markdown plotly quantreg rlang RPostgres scales shiny shinyFiles shinyjqui shinyjs stringr survival survminer table1 tidyr zoo]; }; - ggquiver = derive2 { name="ggquiver"; version="0.2.0"; sha256="1hsayqxf4brck1rx97yyprw1axc83lksgf7mn3rh8hqx4h1f5f0f"; depends=[dplyr ggplot2]; }; + ggquiver = derive2 { name="ggquiver"; version="0.3.0"; sha256="1by2drrikssn0dckxgcdscvyqva7mfcpim6y0hrrqwjv6ld8a6q3"; depends=[ggplot2]; }; ggraph = derive2 { name="ggraph"; version="2.0.5"; sha256="0m4n8iw2b9jk8hcy5blg5w59zsqcpsbv27wbw598dvljpafx8sp3"; depends=[digest dplyr ggforce ggplot2 ggrepel graphlayouts gtable igraph MASS Rcpp rlang scales tidygraph viridis withr]; }; ggraptR = derive2 { name="ggraptR"; version="1.3"; sha256="1i6jp0n1sz5b4sv3d4h5624zhlknih2qp6p2m2ri6s3gsh1pl9zz"; depends=[dplyr ggplot2 pacman purrr shiny]; }; ggrasp = derive2 { name="ggrasp"; version="1.0"; sha256="0lini89mcxl30kx38vny9896hdf4afrz5dgivbbikkb2yyfh2cq1"; depends=[ape bgmm colorspace ggplot2 mixtools]; }; @@ -9866,7 +9887,7 @@ in with self; { ggseg3d = derive2 { name="ggseg3d"; version="1.6.3"; sha256="1rpq2wgyyladz5nkngkvbf3cy4pw212dj1vfh7ksh0bxi7v1k6mh"; depends=[dplyr magrittr plotly scales tidyr]; }; ggseqlogo = derive2 { name="ggseqlogo"; version="0.1"; sha256="13q6kcpxrqxqbji889fx63p0nsi08lk5yymkchig75r5k1d18ky1"; depends=[ggplot2]; }; ggshadow = derive2 { name="ggshadow"; version="0.0.2"; sha256="08bnjl7zsa4kkjl4kadmwss84bngd36xqqly91lvv359qrzr9hzq"; depends=[ggplot2 glue rlang scales]; }; - ggside = derive2 { name="ggside"; version="0.1.2"; sha256="0p25ad26s44y9sdja1a3rgyp0qrhwxxajvszl21kfszl7qlc3pzj"; depends=[ggplot2 glue gtable rlang scales]; }; + ggside = derive2 { name="ggside"; version="0.1.3"; sha256="0jmdw7n2lxb70h1zrb7gh291bxhmf9xb9n4bmmiclkpdvy9wim64"; depends=[ggplot2 glue gtable rlang scales]; }; ggsignif = derive2 { name="ggsignif"; version="0.6.3"; sha256="1ad774c7s7y4i00xd89lfigr9aybl94q98ch598k3rchanr4b1fa"; depends=[ggplot2]; }; ggsn = derive2 { name="ggsn"; version="0.5.0"; sha256="04vnap83w06hbqqi5kgxmrdb3a13n5mcdk5lllymv6nrzvl84f2x"; depends=[ggmap ggplot2 maptools png sf]; }; ggsoccer = derive2 { name="ggsoccer"; version="0.1.6"; sha256="1b3cx2ym3pknshrxmdgwzyx92c1hl6kyvxm2s8izlaa21z8v6z59"; depends=[ggplot2]; }; @@ -9919,7 +9940,7 @@ in with self; { gitear = derive2 { name="gitear"; version="1.0.0"; sha256="139h19yyi7bpkps2vskdnga43ggpgb9fg8jdr7n8vgadxjamv98p"; depends=[dplyr httr jsonlite magrittr mockery Rcpp stringr tibble tidyr]; }; gitgadget = derive2 { name="gitgadget"; version="0.6.4"; sha256="1vfrxa9v39j661s5dv6p5kgrwyr1drhgi6nykpfcm34mvfsgwk83"; depends=[callr curl dplyr jsonlite markdown miniUI rstudioapi shiny shinyFiles usethis]; }; githubinstall = derive2 { name="githubinstall"; version="0.2.2"; sha256="0hqh86r2007hzdbm8rr0fwqhhsna7ji8sdgmdnrxkxraa5f2pfz3"; depends=[curl data_table devtools httr jsonlite mockery]; }; - gitignore = derive2 { name="gitignore"; version="0.1.4"; sha256="15rpzb3szx6k5xwf89p3fyzdbk44ahyxgx35jza4ln3pl16hldz1"; depends=[clipr clisymbols crayon curl glue here jsonlite purrr xfun]; }; + gitignore = derive2 { name="gitignore"; version="0.1.5"; sha256="1jph54ah4ajb5xakbpnbmp44ddqz5np7c60441vhfn7nxa5b9cpx"; depends=[clipr clisymbols crayon curl glue here jsonlite purrr xfun]; }; gitlabr = derive2 { name="gitlabr"; version="2.0.0"; sha256="0snd1pscv09wn3vjvfbvf87dcd43i25m2x3ra8vw37c2zd8hj500"; depends=[arpr base64enc dplyr httr magrittr purrr shiny stringr tibble]; }; gitlink = derive2 { name="gitlink"; version="0.1.3"; sha256="1g34cyx35wlpq42alsayk69x708zxqgvbdndb7j6n1q0rm4vncvd"; depends=[htmltools rlang]; }; givitiR = derive2 { name="givitiR"; version="1.3"; sha256="0y2slhxhj7k413kjaydin9hq3x2xgx4cgjshdplwnmg3x2nakn31"; depends=[alabama rootSolve]; }; @@ -9981,7 +10002,7 @@ in with self; { globe = derive2 { name="globe"; version="1.2-0"; sha256="0xa0q5dac0g7xdlr679f3km8nqxlm7gi4msp9fbfivfvy0rmri96"; depends=[]; }; glogis = derive2 { name="glogis"; version="1.0-1"; sha256="1sbvcg5slvd2c7fasvbj534x36rh11zq3mxv5z0jwpqd6h1xadmd"; depends=[sandwich zoo]; }; glow = derive2 { name="glow"; version="0.10.1"; sha256="1br29hy5j30k5q4xk1dglxlhqalhm76hnx8xg73v6whcg5j11392"; depends=[ggplot2 R6 Rcpp RcppEigen RcppParallel scales]; }; - glpkAPI = derive2 { name="glpkAPI"; version="1.3.2"; sha256="1qwq6vbx1symly6k72xgj5qzqw7j6wdsgiflm649pdxnisfgzh00"; depends=[]; }; + glpkAPI = derive2 { name="glpkAPI"; version="1.3.3"; sha256="07bksiqmq2n7ki3f3sxph4v44k7q2b0d88jwjgfxzdn33i65wqyq"; depends=[]; }; glrt = derive2 { name="glrt"; version="2.0"; sha256="0p2b0digndvnn396ynv56cdg436n3ll7pxkb81rs3dhwbyqyc948"; depends=[survival]; }; glue = derive2 { name="glue"; version="1.4.2"; sha256="1bgpirdvjrf0da734clrixawvpdap4lpda4g89vais96589m8wwz"; depends=[]; }; gluedown = derive2 { name="gluedown"; version="1.0.4"; sha256="1rvaac27kc4mppmw9kdwjaqsa7lwfzwffv63c8cky1z0xrsc5zz1"; depends=[glue magrittr]; }; @@ -10053,7 +10074,7 @@ in with self; { gower = derive2 { name="gower"; version="0.2.2"; sha256="0c9n921wn4hhlvjq96r4nkk96s5788376cbldr7y7bwz348200iz"; depends=[]; }; goxygen = derive2 { name="goxygen"; version="1.0.3"; sha256="0825zl16ap0k3jqhrjw4hfsw97ils77jmf4yqq347k3bb8i3dm79"; depends=[citation gms pander stringi yaml]; }; gpairs = derive2 { name="gpairs"; version="1.3.3"; sha256="08m1ydrr239vnhjbl47mng3i2w9bqmd8fijrwsraq5ysvn826n27"; depends=[barcode colorspace lattice MASS vcd]; }; - gpbStat = derive2 { name="gpbStat"; version="0.3.4"; sha256="0gfmqb8va6jyi3mx7k5jm3n6cgwghd17rzdsh0xp5dznpxrqim65"; depends=[]; }; + gpbStat = derive2 { name="gpbStat"; version="0.3.5"; sha256="1inmh8r02fn48p2f150d3prxlkf61549027vc64a3kyyk5q167ib"; depends=[data_table dplyr magrittr]; }; gpboost = derive2 { name="gpboost"; version="0.6.7"; sha256="1q2y4vb3lf0phpgag8mj6wigrkzij4hl5amx1fv7f8b4aypz55xx"; depends=[data_table Matrix R6 RJSONIO]; }; gpclib = derive2 { name="gpclib"; version="1.5-6"; sha256="11jjgg74l8hy9jz4jylhriqnzv8jcf12y1bkx22v29z3fhgkwkps"; depends=[]; }; gpg = derive2 { name="gpg"; version="1.2.3"; sha256="1dm68bkwgffb6304q1dzjdd9acih36j5pn8jwkh3a331g23g6jii"; depends=[askpass curl]; }; @@ -10066,6 +10087,7 @@ in with self; { gppm = derive2 { name="gppm"; version="0.2.0"; sha256="1n9is3xj52lsck2fiy9j320p2ca6ib36s251i7g3iz99a77b0ahh"; depends=[ggplot2 ggthemes MASS mvtnorm Rcpp rstan]; }; gprofiler2 = derive2 { name="gprofiler2"; version="0.2.1"; sha256="0r0h34b35xzgd9rh55yndn0anxy0z45zdlqa6qfmpn91b6v1bb1g"; depends=[crosstalk dplyr ggplot2 gridExtra jsonlite plotly RCurl tidyr viridisLite]; }; gptk = derive2 { name="gptk"; version="1.08"; sha256="0fk6c8f8fni4y2n2cbfwywlfyz74xlb8lx25wajsxr2v4x74pa7l"; depends=[fields Matrix]; }; + gpx = derive2 { name="gpx"; version="1.0.1"; sha256="0p7fcqswd9swsscf0pjza7jmvwc25k2hrbdhb42hy90q28rdpmqm"; depends=[lubridate rvest xml2]; }; gqlr = derive2 { name="gqlr"; version="0.0.2"; sha256="0gzhqyrbnz3qjzkr4slryrlfhlaxm474y9fahlj0sb0hvcx68pxj"; depends=[graphql jsonlite magrittr pryr R6]; }; gquad = derive2 { name="gquad"; version="2.1-1"; sha256="19k7cqp2j5vb6m9hxdm951wfjh6nsswb64pdz9g93ypcqrg02wa4"; depends=[ape seqinr]; }; grImport = derive2 { name="grImport"; version="0.9-4"; sha256="0y9lsvfp1350das5v5d5pkv10z0n1crc7k4zn9inr94f9s4kjjr5"; depends=[XML]; }; @@ -10096,7 +10118,7 @@ in with self; { graphon = derive2 { name="graphon"; version="0.3.5"; sha256="1x61pdsb3s1vi1iiy9pjq0iz0m5j5b6q3rqhwvx9kvmg4r8yifpv"; depends=[Rdpack ROptSpace]; }; graphql = derive2 { name="graphql"; version="1.5"; sha256="0zi1l93yk5rlgdy4j2nph14w0h8kgvnbzk9fi2jfys8s3fz54ksr"; depends=[jsonlite Rcpp]; }; graphsim = derive2 { name="graphsim"; version="1.0.2"; sha256="09is0yr17vxr08zb3p240n0aapm63418dzx4ilwq08y8050jqqr7"; depends=[gplots igraph Matrix matrixcalc mvtnorm]; }; - grates = derive2 { name="grates"; version="0.2.0"; sha256="10b1fazia9ari0czdscyl19kzma180ww7zlbwy1r4c26jylrwkba"; depends=[clock ellipsis rlang vctrs]; }; + grates = derive2 { name="grates"; version="0.3.0"; sha256="0ycgh6fzrsjv3n0wzcaybk686lq074krayz5jfx690iqj5fjkjqi"; depends=[clock ellipsis rlang vctrs]; }; gratia = derive2 { name="gratia"; version="0.6.0"; sha256="1425dq805a0hk1w243y0mzvdyqvi0n08ghwvsgfwdx3i0d066nba"; depends=[dplyr ggplot2 mgcv mvnfast patchwork purrr rlang tibble tidyr vctrs]; }; graticule = derive2 { name="graticule"; version="0.1.6"; sha256="0y8cyhlfm8amdb23cvxy508mpd4d64xgnk1xlr37ss2pqrxdhpir"; depends=[geosphere quadmesh raster sp]; }; gratis = derive2 { name="gratis"; version="0.2.1"; sha256="035jk2nc8xs0n3ak6k6i42h5gw2n57rrrarb1xwb17khg05dzk25"; depends=[doRNG dplyr foreach forecast GA magrittr mvtnorm polynom purrr shiny tibble tsfeatures tsibble]; }; @@ -10141,7 +10163,7 @@ in with self; { groupICA = derive2 { name="groupICA"; version="0.1.1"; sha256="1wl828ligvvw55xic383gdn7aq4mbwsnkl4ym6f71jn5g3p36d0i"; depends=[MASS]; }; groupRemMap = derive2 { name="groupRemMap"; version="0.1-0"; sha256="1bfp746j0dx7kk44nyjqmimvgw14par9ayvqxnzldc05qsazjdwx"; depends=[]; }; groupWQS = derive2 { name="groupWQS"; version="0.0.3"; sha256="1c5yrsfgkhbg1fcjbrilfmf0phjry5z34536yfizc8wbc7mmmj0c"; depends=[glm2 MASS rjags Rsolnp]; }; - groupdata2 = derive2 { name="groupdata2"; version="1.5.0"; sha256="0ghfv6jwd2mhrgahmy7m197hrfifk86bxkcpwvixrwgzalkgx18j"; depends=[checkmate dplyr lifecycle numbers plyr purrr rearrr rlang tibble tidyr]; }; + groupdata2 = derive2 { name="groupdata2"; version="2.0.0"; sha256="1s642fj0zwr6lw5dwf4y351igz0y2yl7g42wa8wi1wpa65p62553"; depends=[checkmate dplyr lifecycle numbers plyr purrr rearrr rlang tibble tidyr]; }; grouped = derive2 { name="grouped"; version="0.6-0"; sha256="1glxgacpwk7yjbkwg5ci6bmb2il6hf5zhydwi5bbq6hc032m9976"; depends=[MASS]; }; groupedSurv = derive2 { name="groupedSurv"; version="1.0.4.2"; sha256="015av2087i0vxh3axl91crwvparhpc4w2p2j9fq7wylg1gsarraa"; depends=[BH doParallel foreach qvalue Rcpp RcppEigen]; }; groupr = derive2 { name="groupr"; version="0.1.0"; sha256="1gych92dpyxg2vfm3h6djw61d9z2n6q2kvbz1xpq1p0zcyiw16gy"; depends=[dplyr purrr rlang tibble tidyr vctrs]; }; @@ -10198,7 +10220,7 @@ in with self; { gtheory = derive2 { name="gtheory"; version="0.1.2"; sha256="1xc1jl69z5csalqk3hx83s53awcl1fjq6p0x2pczhs7dsvwd6lks"; depends=[lme4]; }; gtools = derive2 { name="gtools"; version="3.9.2"; sha256="0lx97yafrms2mjym8rhcq5586z7s1iqgy8qfm4px3xl1yn5qkc83"; depends=[]; }; gtop = derive2 { name="gtop"; version="0.2.0"; sha256="1nvvbf181x0miw3q0r2g0nklz29ljdsd07cazaajfls7pmhi0xw9"; depends=[hts lassoshooting quadprog]; }; - gtrendsR = derive2 { name="gtrendsR"; version="1.4.8"; sha256="00qzwlasi6l56raf4d7w3287qzhmq5j3aqi7zcxv11kl33nbnams"; depends=[anytime curl ggplot2 jsonlite]; }; + gtrendsR = derive2 { name="gtrendsR"; version="1.5.0"; sha256="15jpda67c81j9qsjcx1kffk0my198z7myafsdw91chj7hjzyw6kl"; depends=[anytime curl ggplot2 jsonlite]; }; gtsummary = derive2 { name="gtsummary"; version="1.5.0"; sha256="19qi0w1ymvaw9m3l1ynj681q4bqhrnjn0ir8jg50ia5jql8mxpal"; depends=[broom broom_helpers cli dplyr forcats glue gt knitr lifecycle purrr rlang stringr tibble tidyr]; }; guaguas = derive2 { name="guaguas"; version="0.2.0"; sha256="1b5bmjd3l9npmjlmd3qq3kxcrm1dqv8m60s89fcybjlaf0942ms8"; depends=[]; }; guardianapi = derive2 { name="guardianapi"; version="0.1.1"; sha256="17xmmr6pfzhdnmf45jzvk84gbfnmlw1qfv1gqjaw85vgm8b6jn6l"; depends=[dplyr httr jsonlite rlang tibble]; }; @@ -10224,7 +10246,7 @@ in with self; { gwpcormapper = derive2 { name="gwpcormapper"; version="0.1.2"; sha256="0wlr8iw9hb06va9nswiz5335gi9af2mg0gh5w13kkr8knz4c7d9f"; depends=[attempt config corpcor crosstalk dplyr DT geodist glue golem htmltools leaflet pkgload plotly processx Rcpp sf shiny shinydashboard shinyjs viridis]; }; gwrpvr = derive2 { name="gwrpvr"; version="1.0"; sha256="0x15nv2pfv99c04lgs6q6hgczarld34xc4aqw9bn179m7j02v6m3"; depends=[]; }; gwrr = derive2 { name="gwrr"; version="0.2-1"; sha256="1fjk217pimnmxsimqp9sn02nr1mwy3hw3vsr95skbfsd6vdda14d"; depends=[fields lars]; }; - gwsem = derive2 { name="gwsem"; version="2.1.2"; sha256="0678p3xxbkdyz5gs097pjykk9cviyn9h16cbwfk5kpxxrs3ry3x3"; depends=[BH data_table lifecycle OpenMx qqman Rcpp]; }; + gwsem = derive2 { name="gwsem"; version="2.1.3"; sha256="0jvwgam7y2zxpcqc1idxjbfjva8rjjv13vlgsagcxryppahbk0n1"; depends=[BH data_table lifecycle OpenMx qqman Rcpp]; }; gym = derive2 { name="gym"; version="0.1.0"; sha256="0vcwzgawqwjsf65hr1mbjkz3px8zsibfkn42jpsg39n13jpfjq8v"; depends=[httr jsonlite]; }; h2o = derive2 { name="h2o"; version="3.34.0.3"; sha256="07lkj7ssxqbxp72l2g3bn3v2k22b0b9166z8r48ydskifagpnw1a"; depends=[jsonlite RCurl]; }; h2o4gpu = derive2 { name="h2o4gpu"; version="0.3.3"; sha256="004sskj3a1mzjfh86m0rq02z1f3kd6650bzv1d3j8pj0xdmqb86c"; depends=[magrittr reticulate]; }; @@ -10296,7 +10318,6 @@ in with self; { hdm = derive2 { name="hdm"; version="0.3.1"; sha256="1kibfc1fc94y1vk06nn0yfvpdzcm30a1jn89lqqfma70x5jpa25s"; depends=[checkmate Formula ggplot2 glmnet MASS]; }; hdme = derive2 { name="hdme"; version="0.3.4"; sha256="0hm41zy4pxqh71bb2ahcnad6484qk4ak43sd43ix1jrqgrqczm5a"; depends=[ggplot2 glmnet Rcpp RcppArmadillo Rdpack Rglpk]; }; hdnom = derive2 { name="hdnom"; version="6.0.0"; sha256="0wszxxfz5xkyqd3xgc9g3d5iwwsfkq9517bgp416h6l31ynxxrwn"; depends=[foreach ggplot2 glmnet gridExtra ncvreg penalized survAUC survival]; }; - hdpGLM = derive2 { name="hdpGLM"; version="1.0.0"; sha256="04mn0cbbx66218rsd273yh29h28f1xl8k0whwlyn6hrg035mlk0x"; depends=[coda data_table dplyr formula_tools ggjoy ggplot2 ggpubr ggridges Hmisc isotone LaplacesDemon magrittr MASS MCMCpack mvtnorm purrr questionr Rcpp RcppArmadillo rprojroot stringr tibble tidyr tidyverse]; }; hdpca = derive2 { name="hdpca"; version="1.1.5"; sha256="0xcakpnp363lz98y3h87p1yhj0gs3f94gx2i8kz4mcizn1ll5xbd"; depends=[boot lpSolve]; }; hdrcde = derive2 { name="hdrcde"; version="3.4"; sha256="16qlk44cjvn2s0vzaf915df65ksdx20dbxhy7fpdqins46hccha3"; depends=[ash ggplot2 KernSmooth ks locfit RColorBrewer]; }; hds = derive2 { name="hds"; version="0.8.1"; sha256="1smg5ixrl7f2x3wn7s5i26dyadn5sigpf4jsk236z1bhnz617ax4"; depends=[survival tensor]; }; @@ -10305,7 +10326,7 @@ in with self; { healthyR = derive2 { name="healthyR"; version="0.1.6"; sha256="1px9c0i0qf0b85nbwjv0cccy2viqvi6c2pd1vx3s6yncj3vx3a5x"; depends=[cowplot dplyr ggplot2 ggrepel lifecycle lubridate magrittr plotly purrr rlang scales sqldf stringr tibble tidyr timetk writexl]; }; healthyR_ai = derive2 { name="healthyR.ai"; version="0.0.2"; sha256="1gvqanwzdimp093yvvrf2f542n3jgz1wah53bgsl954bd3vp4yaz"; depends=[broom dplyr forcats ggplot2 ggrepel h2o magrittr parsnip purrr recipes rlang rsample tibble tidyr timetk]; }; healthyR_data = derive2 { name="healthyR.data"; version="1.0.1"; sha256="18b7aqdy9a0ldf2ib2d0a07k6bfmgdp61y8hl8yl19v35nqj6dvh"; depends=[]; }; - healthyR_ts = derive2 { name="healthyR.ts"; version="0.1.3"; sha256="03aafqdbr378nsfn326jzbwpahga2bkh3b5l532q36dlk1dbdc5n"; depends=[cowplot dplyr earth forcats ggplot2 lubridate magrittr modeltime parsnip plotly purrr recipes rlang stringi tibble tidyquant tidyr timetk workflowsets]; }; + healthyR_ts = derive2 { name="healthyR.ts"; version="0.1.4"; sha256="0ggksxsaawd6zpfhhaic99yrl0g2w81nmm147qldwsshd252xrym"; depends=[cowplot dplyr earth forcats ggplot2 lubridate magrittr modeltime parsnip plotly purrr recipes rlang stringi tibble tidyquant tidyr timetk workflowsets]; }; healthyverse = derive2 { name="healthyverse"; version="1.0.1"; sha256="088vf0va382341jri9y8p5ygdz76jv3fnjf6y0ldf535grifb3dc"; depends=[cli crayon dplyr healthyR healthyR_ai healthyR_data healthyR_ts magrittr purrr rlang rstudioapi tibble]; }; heapsofpapers = derive2 { name="heapsofpapers"; version="0.1.0"; sha256="1b88ff4j6rh0qif43iyb12wipkkjmp5qx33qfzgffr5m54df4kfy"; depends=[aws_s3 curl dplyr fs magrittr rlang scales]; }; heatex = derive2 { name="heatex"; version="1.0"; sha256="0c7bxblq24m80yi24gmrqqlcw8jh0lb749adsh51yr6nzpap6i9n"; depends=[]; }; @@ -10313,7 +10334,7 @@ in with self; { heatmapFit = derive2 { name="heatmapFit"; version="2.0.4"; sha256="1rswp1wp58f21fpyjybcvvmnn53kr54ij83hp05qbvl7yn1fsnrb"; depends=[]; }; heatmapFlex = derive2 { name="heatmapFlex"; version="0.1.2"; sha256="0va8ac2wf1mzm6zamhfpid3xkm7310c6b695c5wbc705nwijnd9q"; depends=[Biobase Heatplus RColorBrewer]; }; heatmaply = derive2 { name="heatmaply"; version="1.3.0"; sha256="1w8yyzb68laxd4zxycvgmpqj5wnyidjgv1vbzbxndp9p92f2cp8a"; depends=[assertthat colorspace dendextend egg ggplot2 htmlwidgets magrittr plotly RColorBrewer reshape2 scales seriation viridis webshot]; }; - heatwaveR = derive2 { name="heatwaveR"; version="0.4.5"; sha256="0pcw305mxxy1abp4n9kh59gqd0axnlhhagnzzm5cfp2m5zs343iy"; depends=[data_table dplyr ggplot2 lubridate plyr Rcpp RcppArmadillo RcppRoll tibble]; }; + heatwaveR = derive2 { name="heatwaveR"; version="0.4.6"; sha256="172qg8dgyn5lbwmyq8dxdccxr4aqaq6iixn5dqb4fy99ahgdbhyv"; depends=[data_table dplyr ggplot2 lubridate plyr Rcpp RcppArmadillo RcppRoll tibble]; }; heavy = derive2 { name="heavy"; version="0.38.196"; sha256="05k788ynw9fhhmjydzp8dbk1vhl44j2rz2shqwn02i40jmwdvwrk"; depends=[]; }; heddlr = derive2 { name="heddlr"; version="0.6.0"; sha256="0ixmcgvfbq4hi3wv1fyzpwacmxmixsw5yq6mq5xygk6ji03m1v23"; depends=[rlang utf8 yaml]; }; hedgehog = derive2 { name="hedgehog"; version="0.1"; sha256="1mvjnm2zlc4pvw9vnhxr0dj1g1sfqvlrnnhcipzfbvr147yan9l5"; depends=[rlang testthat]; }; @@ -10424,7 +10445,6 @@ in with self; { hoa = derive2 { name="hoa"; version="2.1.4.1"; sha256="152vz6cddphmxvm7vi6f3b7jjpib0nsb6qv2k1wrmfrpvv3hgsxx"; depends=[statmod survival]; }; hoardeR = derive2 { name="hoardeR"; version="0.9.4-2"; sha256="1jdxfalmi4p7gwb7jndxbzbklv1fk0c57shnl4jz27s81lndg437"; depends=[bamsignals Biostrings data_table GenomicRanges GenomicTools_fileHandler httr IRanges KernSmooth knitr MASS R_utils RCurl rmarkdown Rsamtools S4Vectors seqinr stringr XML]; }; hoardr = derive2 { name="hoardr"; version="0.5.2"; sha256="0m6wfs78jpxk2jnlqdbg5x7i993j70bvaxm643qhb8axwbq174c1"; depends=[digest R6 rappdirs]; }; - hockeyR = derive2 { name="hockeyR"; version="0.1.1"; sha256="1rzm67ib4i7qa0x302g9k5bm5vabg39l1da5brnkkh9fp6v37lb6"; depends=[dplyr glue httr janitor jsonlite lubridate magrittr polite purrr rvest stringr tidyr zoo]; }; hockeystick = derive2 { name="hockeystick"; version="0.6.1"; sha256="17zf1i2qawmgxqvzgfj65c4gs037kn145l1i8f2ql36f417l471w"; depends=[dplyr ggplot2 lubridate patchwork readr rvest scales tibble tidyr]; }; holdem = derive2 { name="holdem"; version="1.2"; sha256="0mcb4civ4p7apm7kfl88apvb4yznsmn4hggfggmjhs046g6bi2p7"; depends=[]; }; holland = derive2 { name="holland"; version="0.1.2-1"; sha256="0f5nr17rmx1m3g4aw6c1f82xdj2ll5nr8slm8ha80cg2i6a90v10"; depends=[MplusAutomation mvtnorm]; }; @@ -10481,7 +10501,7 @@ in with self; { htmlwidgets = derive2 { name="htmlwidgets"; version="1.5.4"; sha256="1hgz8sx8xrvfcdwa4q15k942w4qsqg8lyxbbf7qyfzbi807wcgqs"; depends=[htmltools jsonlite yaml]; }; htree = derive2 { name="htree"; version="2.0.0"; sha256="15bi5c2p4aghihp3k12s78447j2x9hbsaq56b5lc8jmd1vf0jdwb"; depends=[]; }; hts = derive2 { name="hts"; version="6.0.2"; sha256="06mmxdm7a2fb1r4mb2x12b00rnkaxlrmlkv5yizr3yixmn4is9wb"; depends=[forecast Matrix Rcpp RcppEigen SparseM]; }; - htsr = derive2 { name="htsr"; version="1.1.0"; sha256="0dndsdd8k5jfqgq1h9s58iw7ddqw09g9liyc06ahgykx8pfj9lcy"; depends=[DBI directlabels dplyr editData ggplot2 lubridate openair purrr raster RColorBrewer readr readxl RODBC RSQLite shiny stringr tibble WriteXLS zoo]; }; + htsr = derive2 { name="htsr"; version="1.1.2"; sha256="1zwak1cyx5vphshcr207pa5zz2y32zf3j9irmgd8si52m7fxb35h"; depends=[DBI directlabels dplyr editData ggplot2 lubridate openair purrr raster RColorBrewer readr readxl RODBC RSQLite shiny stringr tibble WriteXLS zoo]; }; httk = derive2 { name="httk"; version="2.0.4"; sha256="0akddji209hw82lcvd7k63k4lzcx3jazycw2p1388b36nzm40w79"; depends=[data_table deSolve magrittr msm mvtnorm purrr survey truncnorm]; }; httpRequest = derive2 { name="httpRequest"; version="0.0.10"; sha256="0f6mksy38p9nklsr44ki7a79df1f28jwn2jfyb6f9kbjzh98746j"; depends=[]; }; httpcache = derive2 { name="httpcache"; version="1.2.0"; sha256="026sl19301al3sid9hlwq8jz5b0zvh9a4n3cl4niqvc2b57h133r"; depends=[digest httr]; }; @@ -10532,7 +10552,7 @@ in with self; { hydrotoolbox = derive2 { name="hydrotoolbox"; version="1.0.1"; sha256="0n2qfw1060szqllvc8vhhv8yy69dhs6m6hh5rnymfhm2wg8994a3"; depends=[ggplot2 lubridate magrittr plotly Rcpp readxl reshape2]; }; hyfo = derive2 { name="hyfo"; version="1.4.3"; sha256="012akh96qwafhgjba1gjwy0r14a6shcsk5b7n1hvw230s07zxd8r"; depends=[data_table ggplot2 lmom maps maptools MASS moments ncdf4 plyr reshape2 rgdal rgeos zoo]; }; hyper_fit = derive2 { name="hyper.fit"; version="1.1.1"; sha256="1xibiydfkhzsw0yqfc0xfzj4yz8xyxqlvnfpyxg33v5fwp9wap3v"; depends=[LaplacesDemon magicaxis MASS rgl]; }; - hyper2 = derive2 { name="hyper2"; version="2.0-0"; sha256="03mgz3b9idwm7m4c2zzyqin8p85pp3yhmaxsxsbkx5li2p66fhwn"; depends=[cubature EMC magrittr mathjaxr partitions Rcpp]; }; + hyper2 = derive2 { name="hyper2"; version="2.0-1"; sha256="0xvmca46sbyajr2glzss59ahh053cg45cgx98zwzjpkqj5l430wh"; depends=[cubature disordR EMC magrittr mathjaxr partitions Rcpp]; }; hyperSMURF = derive2 { name="hyperSMURF"; version="2.0"; sha256="1aczsph6ax5xfd5rfvsd9bmgaq3j2f5f82fx8whrgbin0hxz19d8"; depends=[randomForest unbalanced]; }; hyperSpec = derive2 { name="hyperSpec"; version="0.100.0"; sha256="0m0ws6lm5q1555n0qhixj4fqq4bbcf7i7d73pg85z74a3058gk5s"; depends=[dplyr ggplot2 lattice latticeExtra lazyeval testthat xml2]; }; hypercube = derive2 { name="hypercube"; version="0.2.1"; sha256="0m0n64rl5fnhvhfdknrza8a0h5lw8vbgakaqbyfx77ixhwqhjn1l"; depends=[dplyr plotly stringr]; }; @@ -10714,7 +10734,7 @@ in with self; { iml = derive2 { name="iml"; version="0.10.1"; sha256="1wz6xqhvqkzj723nw7qrlwb1171wvvpxhv3pa8cq7vcbkiflq37r"; depends=[checkmate data_table Formula future future_apply ggplot2 keras Metrics prediction R6]; }; immcp = derive2 { name="immcp"; version="0.9.2"; sha256="07q5dhz12pvy631jxans6q62kzqx9pil3ra72pgqlcxpndvv6f4w"; depends=[Boruta clusterProfiler corrr ggplot2 GSEABase GSVA igraph limma magrittr Matrix pbapply proxyC reshape2 RobustRankAggreg visNetwork]; }; immer = derive2 { name="immer"; version="1.1-35"; sha256="1nmf9wxxyq3p8b5kikpsr8b0v4s84zjpahg1rxvcrhc8blg26hjq"; depends=[CDM coda MASS psychotools Rcpp RcppArmadillo sirt TAM]; }; - immunarch = derive2 { name="immunarch"; version="0.6.6"; sha256="0f6yrjxspcpz51d1q0b2xc3nhwg64z6h0y74jpshc9i15sxlbjb4"; depends=[airr circlize data_table dbplyr dplyr dtplyr factoextra fpc ggalluvial ggplot2 ggpubr ggrepel ggseqlogo magrittr MASS patchwork pheatmap plyr Rcpp readr readxl reshape2 rlang Rtsne scales shiny shinythemes stringr tibble UpSetR]; }; + immunarch = derive2 { name="immunarch"; version="0.6.7"; sha256="1dv983cnjyzwsfn7p174ab6rffpd1h24zy5w78mqapkyr0m95d98"; depends=[airr circlize data_table dbplyr dplyr dtplyr factoextra fpc ggalluvial ggplot2 ggpubr ggrepel ggseqlogo jsonlite magrittr MASS patchwork pheatmap plyr purrr Rcpp readr readxl reshape2 rlang Rtsne scales shiny shinythemes stringr tibble tidyselect UpSetR]; }; immuneSIM = derive2 { name="immuneSIM"; version="0.8.7"; sha256="0brj12xnkzmn3n91vb39fq3q68wmzmwx9l38dl38yypp0l8pknjl"; depends=[Biostrings data_table ggplot2 ggthemes igraph Metrics plyr poweRlaw RColorBrewer repmis reshape2 stringdist stringr]; }; imp4p = derive2 { name="imp4p"; version="1.2"; sha256="1ld8bjjrlij9m7xns7izibag9mndrfh21xgq1w7g3bh5ag9p9fs0"; depends=[Iso missForest missMDA norm Rcpp truncnorm]; }; impactflu = derive2 { name="impactflu"; version="0.1.0"; sha256="0wpaq2q61g6hl9fffs5cjbzdz1qc8dxsbknfs0iarwkn08460bn5"; depends=[dplyr glue lubridate magrittr Rcpp rlang tibble]; }; @@ -10757,7 +10777,7 @@ in with self; { indicspecies = derive2 { name="indicspecies"; version="1.7.9"; sha256="1xza0ha42frz5wizf268j49y3201vpsm4kgj0czsw9wygzjl008f"; depends=[permute]; }; indiedown = derive2 { name="indiedown"; version="0.1.1"; sha256="0r46r6s0asd182gs5map4wilhfb7jhgrcinnl36ib3q1xxn06457"; depends=[cli fs gfonts rlang withr]; }; indirect = derive2 { name="indirect"; version="0.2.0"; sha256="1k7xwsx655nzl43s1mkaysyn5gydq973gynmqip67lssnm7cnch4"; depends=[gplots MASS]; }; - individual = derive2 { name="individual"; version="0.1.6"; sha256="1gsmxjnhhk9npda6gzqiw8l12m33cr3s4nm7szfk0f39z7dl42sh"; depends=[R6 Rcpp testthat]; }; + individual = derive2 { name="individual"; version="0.1.7"; sha256="0by56qwxdgrb8f1x8d1yv5alf22m375a6gjcr3i31hvzn53ncc6w"; depends=[R6 Rcpp testthat]; }; industRial = derive2 { name="industRial"; version="0.1.0"; sha256="0zgnykbr71pi3nii178ijmzd8ijwf3g8y8yz6g3jy4c0by7w676s"; depends=[dplyr ggplot2 lattice magrittr rlang SixSigma tidyr]; }; inegiR = derive2 { name="inegiR"; version="3.0.0"; sha256="1rhkdmpz7mxi7ddyygss5rlh3c8hgxhzdk3fnvnlizc1l55cc6c0"; depends=[jsonlite lubridate plyr tibbletime XML zoo]; }; ineq = derive2 { name="ineq"; version="0.2-13"; sha256="09fsxyrh0j7mwmb5hkhmrzgcy7kf85jxkh7zlwpgqgcsyl1n91z0"; depends=[]; }; @@ -10938,7 +10958,7 @@ in with self; { isotone = derive2 { name="isotone"; version="1.1-0"; sha256="0alk0cma5h3yn4w2nqcahprijsm89b0gby9najbngzi5vnxr6nvn"; depends=[nnls]; }; isotonic_pen = derive2 { name="isotonic.pen"; version="1.0"; sha256="1lgw15df08f4dhrjjfr0jqkcvxwad92kflj2px526pcxwkj7cj3i"; depends=[coneproj Matrix]; }; isotracer = derive2 { name="isotracer"; version="1.0.4"; sha256="1zqn7clqrpy112kvi31f4qpv3y5j07jvngg143dryrn3j2j81yav"; depends=[BH coda data_table dplyr latex2exp magrittr pillar purrr Rcpp RcppEigen rlang rstan rstantools StanHeaders tibble tidyr tidyselect]; }; - isotree = derive2 { name="isotree"; version="0.3.0"; sha256="0ki7ckfij1ky79bwv1j3418dcyb8j9sj00im972wgqp0kr9qpm89"; depends=[Rcpp]; }; + isotree = derive2 { name="isotree"; version="0.3.9"; sha256="07jmf23iklcvvh705jy8pv3lqfw9qdrd073bcx8jmakzhga8rxa5"; depends=[Rcpp]; }; ispd = derive2 { name="ispd"; version="0.2"; sha256="06h4z342d17rkpr2wwck4sq79kprdq6fgqf10jg8cs1f52q6pq0h"; depends=[ibd]; }; isqg = derive2 { name="isqg"; version="1.3"; sha256="1988bc5n4b5mgxrfl1774vfgaw7rxm9vlaxnkx26phjzhlr1ix9h"; depends=[BH R6 Rcpp Rdpack]; }; istacr = derive2 { name="istacr"; version="0.1.3"; sha256="14nhd3v8l827mb1fxfhsxklzxbf4316ijp2qkc99qp7ydmxbk0rd"; depends=[curl jsonlite]; }; @@ -10996,14 +11016,15 @@ in with self; { jcolors = derive2 { name="jcolors"; version="0.0.4"; sha256="18dmjcrci0z1xy2kglrarzm0idr9g3nhbbw7f1ijls3i0piqdri6"; depends=[ggplot2 scales]; }; jcp = derive2 { name="jcp"; version="1.1"; sha256="1b4z1h4ygf39cg870q08ahzi4ccrlrxp6g97y1qiff5pf9xyp1jc"; depends=[]; }; jds_rmd = derive2 { name="jds.rmd"; version="0.3.0"; sha256="0xrs0xabh0m9ax9praiwj1l7z6mb53q53pqvcgwqw7xld6kkgzh7"; depends=[bookdown rmarkdown]; }; - jdx = derive2 { name="jdx"; version="0.1.4"; sha256="0jqf0nkdyv9g4rifzlkls0n64fdcma2yphwl478772jlgfmxm2jb"; depends=[rJava]; }; jeek = derive2 { name="jeek"; version="1.1.1"; sha256="15n0k0i1wwp72g8zqrjmglnckab3p65q3rnpg6d6h8hjcpv82i7g"; depends=[igraph lpSolve pcaPP]; }; + jenga = derive2 { name="jenga"; version="1.0.0"; sha256="1lnqvq979yw3im2cll2bynqafgcs81ndqkzi37smys4fnlb7kyi6"; depends=[abind ggplot2 imputeTS lubridate modeest moments narray philentropy purrr readr scales stringr tictoc]; }; jetpack = derive2 { name="jetpack"; version="0.5.0"; sha256="17dixhg5nwv2fhp7gvcc927kfxzj07x288g6ywbba1mphk9j5nam"; depends=[desc docopt remotes renv]; }; jetset = derive2 { name="jetset"; version="3.4.0"; sha256="0c99h5npsv2gf5d59s4qhkaqmjhbwa3prcykk24wzhnpfq6y6xhp"; depends=[AnnotationDbi org_Hs_eg_db]; }; jfa = derive2 { name="jfa"; version="0.6.0"; sha256="1kcwjdzz31firrdh5kz5h1wyq9faf5k4y3jg5d7gjw0rzzhfw662"; depends=[extraDistr]; }; jgcricolors = derive2 { name="jgcricolors"; version="1.0.0"; sha256="1lg6yzqly5y2cf396b6rvfqplnfyz9v9ay2g4q9m110mng5ln96l"; depends=[ggplot2 knitr markdown RColorBrewer stringr]; }; jiebaR = derive2 { name="jiebaR"; version="0.11"; sha256="08v64xwr9jp4vh88x7y935khh4cmj8rwsjaxfd2c67n0445qppmd"; depends=[jiebaRD Rcpp]; }; jiebaRD = derive2 { name="jiebaRD"; version="0.1"; sha256="1wadpcdca4pm56r8q22y4axmqdbb2dazsh2vlhjy73rpymqfcph4"; depends=[]; }; + jinjar = derive2 { name="jinjar"; version="0.1.0"; sha256="1far987dcwm0akj61lww1n2p72v5n3gm9qmxgcd1n760rcziq35g"; depends=[checkmate cpp11 fs jsonlite rlang]; }; jipApprox = derive2 { name="jipApprox"; version="0.1.3"; sha256="1dgawgvkpswv1mxjlqz4ip7vy2856fqvs24hkfl338jgap60grhp"; depends=[sampling]; }; jjb = derive2 { name="jjb"; version="0.1.1"; sha256="0y9yvnzg6xngz1fvzl5jm4yb1pg6wrp3id0gysv214wcznf3gna9"; depends=[]; }; jlctree = derive2 { name="jlctree"; version="0.0.2"; sha256="0l8piz0m9iv9lbw35yx1ww0db0pv0qhbvkz4l36fwjsgnjlh8f6a"; depends=[lme4 rpart survival]; }; @@ -11024,7 +11045,7 @@ in with self; { joineRML = derive2 { name="joineRML"; version="0.4.5"; sha256="0rj6ag1qlz1iyia89pkxw8l2aj8msph17g7qkgc3g99v4i9rj2pp"; depends=[cobs doParallel foreach generics ggplot2 lme4 MASS Matrix mvtnorm nlme randtoolbox Rcpp RcppArmadillo survival tibble]; }; joineRmeta = derive2 { name="joineRmeta"; version="0.1.2"; sha256="0lkj3rry8kvdcl3dxrkvnql8rl3fsgc4lk5qdifhl41aws2q7ccs"; depends=[ggplot2 gridExtra gtools JM joineR lme4 MASS Matrix meta msm statmod survival]; }; joinet = derive2 { name="joinet"; version="0.0.10"; sha256="1jjx1rvg2x9zdfdqsjk04hcn7qsf8g7pq8q0x9q83kd8sb1ikjk5"; depends=[cornet glmnet palasso]; }; - joint_Cox = derive2 { name="joint.Cox"; version="3.14"; sha256="1lc3dmhq2xbhc2vc2dgmww7y4961jvry1im8xvd1nj1m9w2vp0mg"; depends=[survival]; }; + joint_Cox = derive2 { name="joint.Cox"; version="3.15"; sha256="0g1ypwsnnm3068n7d3whmrlsc4c7banj49af1id7x174ibh20gqd"; depends=[survival]; }; jointDiag = derive2 { name="jointDiag"; version="0.4"; sha256="18x6rxaxhz9hcp6rfmjlanbfsc5q61p6xcxixnc8ayyxbdq7q6rf"; depends=[]; }; jointMeanCov = derive2 { name="jointMeanCov"; version="0.1.0"; sha256="1cai5g63n11dirn9fldzkqxcnkxc20ndr9ygrr9rk0s1qz8x63pb"; depends=[glasso]; }; jointNmix = derive2 { name="jointNmix"; version="1.0"; sha256="0ibh7hqkpzlfk3bk4d2dd64jhr8cvw563k082vwnljiam7k5nj4b"; depends=[]; }; @@ -11056,7 +11077,7 @@ in with self; { jsonlite = derive2 { name="jsonlite"; version="1.7.2"; sha256="1lhzcpz9clwq04i5m6jzkvw9x03pwlqrixv4l9xzchjr8d84nd86"; depends=[]; }; jsonstat = derive2 { name="jsonstat"; version="0.0.2"; sha256="0p0d3snl1971p5ikrkmwqrjjh4fy0b89qk3rnd1dayfb0r80xnnj"; depends=[cli dplyr jsonlite rlang]; }; jsontools = derive2 { name="jsontools"; version="0.1.0"; sha256="13i1g8lmzgs7hd0xay4gm8z2myzbjzi73fwp9x4f4f9mywj7zl5s"; depends=[bit64 DBI glue jsonlite magrittr pillar purrr rlang RSQLite tibble tidyselect vctrs withr]; }; - jsonvalidate = derive2 { name="jsonvalidate"; version="1.1.0"; sha256="1vxklvkva547mzbgi7hll46sfx274c6j4m70algygphz783x3dsx"; depends=[V8]; }; + jsonvalidate = derive2 { name="jsonvalidate"; version="1.3.1"; sha256="1qp1wb4js0hpdlcp2z6amslm9hvbgbfr7b6jkp67bgcignqz3pf4"; depends=[V8]; }; jstable = derive2 { name="jstable"; version="1.0.7"; sha256="1hs202z49aazsadr0jb67wk43i18y3h1aw0xflfmvirxjxr63xm8"; depends=[coxme data_table dplyr geepack labelled lme4 magrittr purrr survey survival tableone tibble]; }; jti = derive2 { name="jti"; version="0.8.0"; sha256="15rx44psz5hbpqzlmwnmqzzdf6488n17mbhyh52wyaaa70gk9ndh"; depends=[igraph Rcpp RcppArmadillo sparta]; }; jtools = derive2 { name="jtools"; version="2.1.4"; sha256="1zbzhr7bz735b8pvqjxhqnmh3sl12xvpz5fpkmjngvwi4yz5873r"; depends=[crayon generics ggplot2 magrittr pander pkgconfig rlang tibble]; }; @@ -11083,7 +11104,7 @@ in with self; { karaoke = derive2 { name="karaoke"; version="1.0"; sha256="1kx11lijdffhhh8prjgsamshgg2v29b2i129fjqi079waa335352"; depends=[seewave tuneR]; }; karel = derive2 { name="karel"; version="0.1.0"; sha256="0ncjzfzm8a6vx2mswvck3j6vnpqhzrjd5gd371xa5cgi0w1figa9"; depends=[dplyr gganimate ggplot2 gifski magrittr purrr tidyr]; }; katex = derive2 { name="katex"; version="1.3.0"; sha256="07f381ja2pwgnjz9794zc6cg4qzr16zfm116f4dwjghyfblxs3qa"; depends=[V8]; }; - kayadata = derive2 { name="kayadata"; version="0.5.1"; sha256="0rpqdbk89q8dmpb5x5kiqwkmq9pbgmg8zs0hi46vlhsy38pbxh7m"; depends=[dplyr forcats ggplot2 magrittr scales stringr tidyr]; }; + kayadata = derive2 { name="kayadata"; version="1.0.0"; sha256="1zmdwds1p430770426lhwhffissb44x27wqh1vbz7z52ma0h7l91"; depends=[dplyr forcats ggplot2 magrittr scales stringr tidyr]; }; kazaam = derive2 { name="kazaam"; version="0.1-0"; sha256="0j7vysnmiv9sggcxdn3nrgfvyl52pza4kkjnsa0xlb3fzq9qpwlz"; depends=[pbdMPI]; }; kcirt = derive2 { name="kcirt"; version="0.6.0"; sha256="1gm3c89i5dq7lj8khc12v30j1c0l1gwb4kv24cyy1yw6wg40sjig"; depends=[corpcor mvtnorm snowfall]; }; kcopula = derive2 { name="kcopula"; version="0.1.0"; sha256="07ddrq4lxp8i6n7c7ac7x9mdg9gfmlh7bv3n34qalwv0a6fa061w"; depends=[pracma]; }; @@ -11227,7 +11248,7 @@ in with self; { label_switching = derive2 { name="label.switching"; version="1.8"; sha256="0xwwhn249aibip12yxjwlrpyqj6zvc95zc7n9jf2vjjpashyc3yk"; depends=[combinat lpSolve]; }; labelVector = derive2 { name="labelVector"; version="0.1.2"; sha256="06pqkgn852min2mqhjkia6qqdwkp8cz32lbxzp3a2b8bcggbijn4"; depends=[]; }; labeling = derive2 { name="labeling"; version="0.4.2"; sha256="0rfikd9gy70b8qz87q9axcwv8nmn9mbxfdwypxi0sghpfs9df8p0"; depends=[]; }; - labelled = derive2 { name="labelled"; version="2.8.0"; sha256="0fs8fhmk9j2nv2j87mpkmm0clz34f8kybnzn6pzqpcbwk0i2pcwg"; depends=[dplyr haven lifecycle rlang stringr tidyr vctrs]; }; + labelled = derive2 { name="labelled"; version="2.9.0"; sha256="0ffnhlr239nqcwb35m4hll21abnnhpmyy5wlxnyahrg0kqb0xb1n"; depends=[dplyr haven lifecycle rlang stringr tidyr vctrs]; }; labelmachine = derive2 { name="labelmachine"; version="1.0.0"; sha256="18l7argmf7d60cv34w7acjg4bk08nhi2cc5p61sx2zmq28v8nndr"; depends=[yaml]; }; labelrank = derive2 { name="labelrank"; version="0.1"; sha256="03pmpkjdhgw80473kdzdz4s4828pa8f5bja2zqicxrhvyvicvz6f"; depends=[pdist]; }; labourR = derive2 { name="labourR"; version="1.0.0"; sha256="0skr8qr1m849l3gpcsn5bjxyjczlzzmsm2j6xcmxv33lf95qg6gi"; depends=[cld2 data_table magrittr stopwords stringdist]; }; @@ -11271,7 +11292,7 @@ in with self; { lassoscore = derive2 { name="lassoscore"; version="0.6"; sha256="1i3i07da8sw9w47rcflhylz8zxvzkyycbc1a4gf6hbcpp21rqd7d"; depends=[glasso glmnet Matrix]; }; lassoshooting = derive2 { name="lassoshooting"; version="0.1.5-1"; sha256="0ixjw8akplcfbzwyry9p4bhbcm128yghz2bjf9yr8np6qrn5ym22"; depends=[]; }; latdiag = derive2 { name="latdiag"; version="0.3"; sha256="13wk8vhiwr9drcx5f4wlgbin6hc83zv54yr4h3qhjagm3hxcxbw0"; depends=[Rdpack]; }; - latentcor = derive2 { name="latentcor"; version="1.1.0"; sha256="1galk0pdmaa6p2h738yzg16g4cvmxnrvyz4ybap66aq4f6a4z8jb"; depends=[chebpol doFuture doRNG fMultivar foreach future ggplot2 heatmaply MASS Matrix microbenchmark mnormt pcaPP plotly rmarkdown]; }; + latentcor = derive2 { name="latentcor"; version="1.2.0"; sha256="1kqsiaz84cln6l6ajzn2grrc6bch7pfsrr39l2jvkmcnp8n5cimi"; depends=[chebpol fMultivar ggplot2 heatmaply MASS Matrix mnormt pcaPP plotly]; }; latentgraph = derive2 { name="latentgraph"; version="1.1"; sha256="11h7nrd81licvdikiwwfkz4x9i7drz09w5ns672b7fw0pj4qqgsr"; depends=[glmnet MASS pracma Rcpp RcppArmadillo]; }; latentnet = derive2 { name="latentnet"; version="2.10.5"; sha256="05yjf7a16imv1p2lg5dmfk183xll49crnkg0mbz4c4b39nksy85v"; depends=[abind coda ergm MASS mvtnorm network sna statnet_common]; }; later = derive2 { name="later"; version="1.3.0"; sha256="0acqg29hcm2iq1418b54np7zb5pnr3xzrwc3ijv2pz9wra10ix88"; depends=[Rcpp rlang]; }; @@ -11338,7 +11359,7 @@ in with self; { leafdown = derive2 { name="leafdown"; version="1.0.0"; sha256="1zvgbglrb4javazvyph7b48x3qab7kiziiya1a1wccdm9l6qh58w"; depends=[checkmate leaflet magrittr R6 shiny shinyjs]; }; leafem = derive2 { name="leafem"; version="0.1.6"; sha256="0ml110rva6ca8ycy0mrivq3wsj0dvyi5f62i92948r7mk6kf0l6a"; depends=[base64enc geojsonsf htmltools htmlwidgets leaflet png raster sf]; }; leafgl = derive2 { name="leafgl"; version="0.1.1"; sha256="042jps6zh4xr0xj19a7fbgrcb6q6gsw2q5f191lyskr8iajdrz1h"; depends=[geojsonsf htmltools jsonify leaflet sf]; }; - leaflegend = derive2 { name="leaflegend"; version="0.4.0"; sha256="1qijjkh2vga6ip77hbkwh3h7z00ypl56b58wb4m3mc949wbx255z"; depends=[base64enc htmltools htmlwidgets leaflet]; }; + leaflegend = derive2 { name="leaflegend"; version="0.5.0"; sha256="1h4yjw3apzw0gbay6s6cxr7r6bxq8jvm4nfv3csh2qrdqlzsb6h9"; depends=[base64enc htmltools htmlwidgets leaflet]; }; leaflet = derive2 { name="leaflet"; version="2.0.4.1"; sha256="07whi3zkz1lmbqx5ydpiya802ck22ny0s7gskwnx7r8xbwlkiw5h"; depends=[base64enc crosstalk htmltools htmlwidgets leaflet_providers magrittr markdown png raster RColorBrewer scales sp viridis]; }; leaflet_esri = derive2 { name="leaflet.esri"; version="1.0.0"; sha256="01bwzxh2rdhpvvazaxsji8axl765q1ix1fdxla6i61nvqkpw3dz1"; depends=[htmltools leaflet leaflet_extras]; }; leaflet_extras = derive2 { name="leaflet.extras"; version="1.0.0"; sha256="0li7651cwlz7sg04xdrmvhkrf0n6amaydck7gqz0wkb6wq8hcyzw"; depends=[htmltools htmlwidgets leaflet magrittr stringr]; }; @@ -11379,7 +11400,7 @@ in with self; { leontief = derive2 { name="leontief"; version="0.2"; sha256="1gy23047c6gci9m83yrb662d5685x1kky6m94w68swms59gdc6yp"; depends=[Rcpp RcppArmadillo]; }; leri = derive2 { name="leri"; version="0.0.1"; sha256="1309v58xdw3p6y2wpnl64vgsds5kvfiary2a3fa041kz23jzbp3c"; depends=[ncdf4 raster]; }; lero_lero = derive2 { name="lero.lero"; version="0.2"; sha256="03ll7jzcay0swwpmxyf0y9k2h8mxx4p5v3ggm9dgdz4j99934l70"; depends=[]; }; - lessR = derive2 { name="lessR"; version="4.0.5"; sha256="1f85z3dfaczlzp2ww3bvqcn1zj83v6h2llyyv20znihydr1ln3j2"; depends=[colorspace ellipse knitr lattice latticeExtra leaps openxlsx robustbase viridisLite]; }; + lessR = derive2 { name="lessR"; version="4.0.6"; sha256="1qw99fnb1zsvhgcxfjhj8snv7lzwlazpl586x16f9y9y61897vbv"; depends=[colorspace ellipse knitr lattice latticeExtra leaps openxlsx robustbase shiny viridisLite]; }; lest = derive2 { name="lest"; version="1.1.0"; sha256="1d69kvdl31crv4ik8bwylq3s3f4skzrjc4x49c79w443g64n2jp9"; depends=[]; }; lestat = derive2 { name="lestat"; version="1.9"; sha256="1skxymdf3ncmdbskh7711xxgwsmwxfxnl52gcgw06jscx6s6wrsd"; depends=[MASS]; }; letsR = derive2 { name="letsR"; version="4.0"; sha256="07l1wgwnkqnvh47ssg62vj88vgml52n0934w00pjxdk90kk3c5zs"; depends=[fields geosphere maps maptools raster rgdal rgeos sp XML]; }; @@ -11407,7 +11428,7 @@ in with self; { liayson = derive2 { name="liayson"; version="1.0.4"; sha256="0xxl2l24km563n649kxzr15q0f6ks7l5yab3ig229s50i6sbn8nd"; depends=[ape arules biomaRt distances e1071 gplots matlab phangorn plyr proxy RColorBrewer]; }; libbib = derive2 { name="libbib"; version="1.6.2"; sha256="1d6d4fc9bpj8lkkblqcccdcsf21136vdr38kzy91259z3525gvcg"; depends=[curl data_table pbapply stringr xml2]; }; libcoin = derive2 { name="libcoin"; version="1.0-9"; sha256="1syrcdj5qg5m3zd3dlxgpfklswbalfg42w058dr09hnzqsvx0z9d"; depends=[mvtnorm]; }; - libgeos = derive2 { name="libgeos"; version="3.9.1-1"; sha256="0bx7cp1n2l1ayf3w2a0hhd12crfxii9c50gzagd9lc840xgdipsn"; depends=[]; }; + libgeos = derive2 { name="libgeos"; version="3.10.0-1"; sha256="0mvdz8lcmfriiy3rq9nwlrjy8lppfk174ibxnssmjzqmrqr035j4"; depends=[]; }; libr = derive2 { name="libr"; version="1.2.1"; sha256="0gc799lcwprjj0myn0fyh65lybynn1hl3x04xs7zxq1ijbcs8j9q"; depends=[crayon data_table dplyr haven openxlsx Rcpp readr readxl tibble]; }; librarian = derive2 { name="librarian"; version="1.8.1"; sha256="0bbgx9pdwcv64p6zdrw3m0893ar4bw6z90vhbgplp53l65cch548"; depends=[BiocManager remotes]; }; librarysnapshot = derive2 { name="librarysnapshot"; version="0.1.2"; sha256="0v4x564zpm58kxs5n84bi6mcjhbzjg6a2lc30vsc8kbm3qy0nq38"; depends=[]; }; @@ -11424,13 +11445,13 @@ in with self; { liftr = derive2 { name="liftr"; version="0.9.2"; sha256="0azi831c4f0vcq27a3q86vj90zvwrzcy4plhj9hqkk4qz8xw113x"; depends=[knitr rmarkdown rstudioapi stringr yaml]; }; lifx = derive2 { name="lifx"; version="0.2.0"; sha256="0p9ljd3s3lc1rkhzpp801izy9y52f0yc1dsrsxwx5gi89cnib596"; depends=[assertthat crayon curl httr jsonlite]; }; liger = derive2 { name="liger"; version="2.0.1"; sha256="121ipwznm40x2xhhlxd20385va4nmvgni5dg24lbhyfn5sb3dsy1"; depends=[matrixStats Rcpp RcppArmadillo]; }; - lightgbm = derive2 { name="lightgbm"; version="3.3.0"; sha256="1sgimzax84rag02gqv2qag2cg8mmhkv71xydawg7bkxk95dycbc2"; depends=[data_table jsonlite Matrix R6]; }; + lightgbm = derive2 { name="lightgbm"; version="3.3.1"; sha256="0hvpwirskzcd7ww47f9gllgl3wjvpghnwj8a41glpppwwaaxa0z4"; depends=[data_table jsonlite Matrix R6]; }; lightr = derive2 { name="lightr"; version="1.6.0"; sha256="1d1xrsra3ng5g9vlsvdgimfyx6kqdazwv8i787qh3nbavxfqjmay"; depends=[future_apply progressr xml2]; }; lightsout = derive2 { name="lightsout"; version="0.3"; sha256="0ypniqf9wk35dd9j57wd7gxchr5hy25fwhmkndz2z8b9ajhm3c9b"; depends=[magrittr shiny shinyjs]; }; likelihood = derive2 { name="likelihood"; version="1.7"; sha256="0q8lvwzlniijyzsznb3ys4mv1cqy7ibj9nc3wgyb4rf8676k4f8v"; depends=[nlme]; }; likelihoodAsy = derive2 { name="likelihoodAsy"; version="0.51"; sha256="0qxwdf6npyj926zd2pbfscgz1z01hwgm6099h882d2l1sim2j9g7"; depends=[alabama cond digest nleqslv pracma Rsolnp]; }; likelihoodExplore = derive2 { name="likelihoodExplore"; version="0.1.0"; sha256="13cnql7pbx8qq1j3cfb3lkzzf2k55shpfa0jd00z30ys6imxzcfn"; depends=[lazyeval plyr]; }; - likelihoodR = derive2 { name="likelihoodR"; version="1.0.5"; sha256="15idzz2wsk55m5g70gcjkhqakx8knicdrsw8h87k7b1zygigds6q"; depends=[]; }; + likelihoodR = derive2 { name="likelihoodR"; version="1.0.6"; sha256="015g7crpfmzyiy16czknmv6ay3276kznby2y8h65y7mld4vzmcdj"; depends=[]; }; likert = derive2 { name="likert"; version="1.3.5"; sha256="0c4irxs7pp1z8nj4s8cq23daw4h94n3h7x4f6q1d85614qcl9l3p"; depends=[ggplot2 gridExtra plyr psych reshape2 xtable]; }; lilikoi = derive2 { name="lilikoi"; version="2.0.4"; sha256="037iq4kqn9iwdq70hq1l7w1ak533ba43npnkr6yk6jnl7avf4bma"; depends=[car caret dplyr gbm ggplot2 glmnet h2o impute infotheo limma M3C Metrics MLmetrics pathifier pathview plyr preprocessCore pROC RCy3 reshape reticulate RWeka scales stringr survival survminer]; }; lillies = derive2 { name="lillies"; version="0.2.9"; sha256="0ljqfl9w26z61fivzlr4sh371s418alzzkdlhghsq0w03871wd3h"; depends=[ddpcr dplyr knitr pracma progress rlang survival tidyr]; }; @@ -11442,6 +11463,7 @@ in with self; { linERR = derive2 { name="linERR"; version="1.0"; sha256="1mhiyqfpwagg161ncp5ndd22hlh12qzr360nms13rgyd8a077cq7"; depends=[survival]; }; linLIR = derive2 { name="linLIR"; version="1.1"; sha256="1v5bwki5j567x2kndfd5nli5i093a33in31025h9hsvkbal1dxgp"; depends=[]; }; linbin = derive2 { name="linbin"; version="0.1.3"; sha256="04x97ah45qljpa4kg1iqz85w0q7936n4sq7vbzk2mx5m87p83czh"; depends=[]; }; + linconGaussR = derive2 { name="linconGaussR"; version="0.1"; sha256="10l7qajqa8f8yq3zbjmjxf0va2krq1rab42ihfhz2jyv3mn24xsi"; depends=[MASS Rcpp RcppArmadillo]; }; lindia = derive2 { name="lindia"; version="0.9"; sha256="1qma8wr0fkwx03x971crkh8cfc8z4374py1r1wvszj9wzi4vfp5r"; depends=[ggplot2 gridExtra MASS]; }; linear_tools = derive2 { name="linear.tools"; version="1.3.0"; sha256="14lp3gifzbid82lkr7rdqajz2abp8m7y8irpwx6s8w66djjfckda"; depends=[ggplot2 magrittr plyr pryr scales stringr]; }; linearQ = derive2 { name="linearQ"; version="2.0"; sha256="0sx7bx0x1k193day5w1dbmc09kn5741pcilxijjn2y5aijhd5wk9"; depends=[Rcpp stepR]; }; @@ -11450,7 +11472,7 @@ in with self; { lineup = derive2 { name="lineup"; version="0.38-3"; sha256="15m90cg700lq1w54adkmld876fpr41nhv1y0vqwbhwwfjgfxj700"; depends=[class qtl]; }; lineup2 = derive2 { name="lineup2"; version="0.6"; sha256="0qkxwn30g0bjm9aq9a59pb3xq844qr43ribnk607zlf8lwbibsk2"; depends=[Rcpp]; }; lingmatch = derive2 { name="lingmatch"; version="1.0.2"; sha256="1986vi8r105wsd27vzy7wq9w0flgmgigssa3p0j7xmgr4kmjkks4"; depends=[Matrix Rcpp RcppParallel]; }; - lingtypology = derive2 { name="lingtypology"; version="1.1.6"; sha256="0f5cw3i5j1dzn2liksvzwq0b3y9kii8jbmlr2x3aa3wdgv4fvsx6"; depends=[jsonlite leaflet leaflet_minicharts stringdist]; }; + lingtypology = derive2 { name="lingtypology"; version="1.1.7"; sha256="1ykbjzv139vdlpyf2ka59whz1x98ingsj2z09lz4f5f8dasp7fn7"; depends=[jsonlite leaflet leaflet_minicharts stringdist]; }; linguisticsdown = derive2 { name="linguisticsdown"; version="1.2.0"; sha256="1y2g8h0p4q4mjrawzyprsdw8ynqcbpnjypyhdaf03pcwqglcirkl"; depends=[DT knitr magrittr miniUI rstudioapi shiny stringr]; }; link2GI = derive2 { name="link2GI"; version="0.4-7"; sha256="0fl7m1r7iaihkym0k65gg2dqr03fra93zjwbddq14lsm1bx1hg7w"; depends=[devtools R_utils raster roxygen2 sf stringr]; }; linkcomm = derive2 { name="linkcomm"; version="1.0-14"; sha256="15xm4c7sqpid1vjra250dnvdx98qgzbzmvaycf3zqqnqcmy5bw9n"; depends=[dynamicTreeCut igraph RColorBrewer]; }; @@ -11485,7 +11507,7 @@ in with self; { liureg = derive2 { name="liureg"; version="1.1.2"; sha256="1zhc5fs47whjvvwwiivykxfchzbjbldyvdmqh9rp7ccwba2q3956"; depends=[]; }; live = derive2 { name="live"; version="1.5.13"; sha256="1s6yrbwlc4wqszl2yvy1x6d93my18ba8sm8pwfy547cd1x055vig"; depends=[breakDown data_table dplyr e1071 forestmodel ggplot2 gower MASS mlr shiny]; }; livechatR = derive2 { name="livechatR"; version="0.1.0"; sha256="1k0z6q3s9iw962m1lwlx45p95flzl5jg1xh6ng426v9jh1yyrbb2"; depends=[data_table dplyr jsonlite magrittr purrr]; }; - liver = derive2 { name="liver"; version="1.9"; sha256="1pyv4s4sh4mhgh73g2l604855nvagpw0cqra5gy6zi7wj3zx632q"; depends=[class ggplot2]; }; + liver = derive2 { name="liver"; version="1.10"; sha256="0mmlaw8xn4fwwwxchi7mlvhcg4z04v6x472478qsmmf3vsbdjg3a"; depends=[class ggplot2]; }; ljr = derive2 { name="ljr"; version="1.4-0"; sha256="0jby94ml8w6pwnxbmv6qfjww2myvvnn9vrmlqpdh71dhgp3z35py"; depends=[]; }; llama = derive2 { name="llama"; version="0.10.1"; sha256="1rw4lbz172hwb24r424qq86bw7m3xxl66k474wx1scpcrsix2nzw"; depends=[BBmisc checkmate data_table ggplot2 mlr parallelMap plyr rJava]; }; llbayesireg = derive2 { name="llbayesireg"; version="1.0.0"; sha256="0jhkmrjkqfm1flwsbpv6060j6g7cj4ngm0drvrlvsiqpni0k96mh"; depends=[coda ggplot2 llogistic MASS MCMCpack Rcpp rstan StanHeaders]; }; @@ -11554,7 +11576,7 @@ in with self; { loe = derive2 { name="loe"; version="1.1"; sha256="1n16pgfxg9vcn729xxjbbvavg2ywbdcch9v2ph8nv3z7psc0q46c"; depends=[MASS]; }; loewesadditivity = derive2 { name="loewesadditivity"; version="0.1.0"; sha256="0j9vvh2ys09hy2k3mbrlf0p493ymrxvfsdcjw0p6rlls54z9lqqc"; depends=[dplyr ggplot2 gridExtra magrittr metR rlang rootSolve tidyr viridis]; }; log = derive2 { name="log"; version="1.1.0"; sha256="04cl8qb2ivdili89h4cghcjqywpkz85v48g2vkg6hdlimcd63wff"; depends=[cli crayon R6]; }; - log4r = derive2 { name="log4r"; version="0.3.2"; sha256="18r5g0817wfn0kmqwv6vf7r2vavi0xh6mqmxrh59y9w3c84npfhl"; depends=[]; }; + log4r = derive2 { name="log4r"; version="0.4.1"; sha256="0qxzmbrjasa766vgqxn7a2ifnpny7zchvb2b3mi8gkbznxlixyif"; depends=[]; }; logKDE = derive2 { name="logKDE"; version="0.3.2"; sha256="09gachibj0klqa9ijw572lwphbh9qj6zqray5byq1dh7zsiq516q"; depends=[pracma Rcpp]; }; logNormReg = derive2 { name="logNormReg"; version="0.4-0"; sha256="10b6a7z2mq0vrpg3sy4m5g8xaw3zs5k0zsbngxqmjmln99big9ad"; depends=[]; }; logOfGamma = derive2 { name="logOfGamma"; version="0.0.1"; sha256="0r7di0l646ycfmdjk8hli6b0v7qj0i8z3i8i7rwd3fsblb2q22vd"; depends=[]; }; @@ -11574,7 +11596,7 @@ in with self; { logisticPCA = derive2 { name="logisticPCA"; version="0.2"; sha256="07ikyn127ld0fjdw7x911wrswqwqpw4lbcz0iffvh6jfjkgyk341"; depends=[ggplot2]; }; logisticRR = derive2 { name="logisticRR"; version="0.3.0"; sha256="0i9x7rynxcybdnjqbjsny8jsl96mivzdazdgmcg72qrv8qfwpszl"; depends=[nnet]; }; logitnorm = derive2 { name="logitnorm"; version="0.8.38"; sha256="01svs20dr0f1h66j5vn3ychjlgwzak96f8p9lmzd29anjlkm9x9q"; depends=[]; }; - logitr = derive2 { name="logitr"; version="0.3.0"; sha256="1h956s32sq3sgyaxq3ibpkp0l30fz2qgfqj2g5xc7sia8p0v8bqj"; depends=[MASS nloptr randtoolbox]; }; + logitr = derive2 { name="logitr"; version="0.4.0"; sha256="0j3p0lkwdj700nfjpkc7n4kf3xjz7ak69q8rziilpiqg7dxf1502"; depends=[MASS nloptr randtoolbox]; }; loglognorm = derive2 { name="loglognorm"; version="1.0.1"; sha256="0rhx769a5nmidpbpngs2vglsbkpgw9badz3kj3jfmpj873jfnbln"; depends=[]; }; logmult = derive2 { name="logmult"; version="0.7.3"; sha256="10dmvvwlaw8dn6h0343d8apn7rlc2b8nys3f38x9wlvd9xhhlwxm"; depends=[gnm qvcalc]; }; lognorm = derive2 { name="lognorm"; version="0.1.9"; sha256="0mx7wgqpiprwvh5srf8z9f8glz2kgh8l15b2pydb4bvqx1m54kxa"; depends=[Matrix]; }; @@ -11603,7 +11625,7 @@ in with self; { loon_data = derive2 { name="loon.data"; version="0.1.3"; sha256="0sdld3yggjadykqaljf0p4cymy2c47yaxjphc6jwyragzpv4awzw"; depends=[]; }; loon_ggplot = derive2 { name="loon.ggplot"; version="1.3.0"; sha256="0bzsyj1z2abqp8k6mnn8x2sk28g8r55csfwkxy0gm35mclv7qzmv"; depends=[ggmulti ggplot2 gridExtra loon patchwork rlang scales]; }; loon_shiny = derive2 { name="loon.shiny"; version="1.0.1"; sha256="0103n5bvabs8dv9dx8nq4lvf5wi7s3knfdifvr9hhvyb59iqkgaw"; depends=[base64enc colourpicker gridExtra loon loon_ggplot shiny]; }; - loon_tourr = derive2 { name="loon.tourr"; version="0.1.2"; sha256="1n8abzwkm15kpxs6rnzw5d138595qvhs3i671wn9rn35bp1gxs4k"; depends=[loon loon_ggplot MASS tibble tourr]; }; + loon_tourr = derive2 { name="loon.tourr"; version="0.1.3"; sha256="1vdxqdsr89gzvsw9gx001rw416586lqyq0rp3g55n1lh6h9cy19d"; depends=[loon loon_ggplot MASS tibble tourr]; }; loop = derive2 { name="loop"; version="1.1"; sha256="1gr257fm92rfh1sdhsb4hy0fzwjkwvwm3v85302gzn02f86qr5dm"; depends=[MASS]; }; loose_rock = derive2 { name="loose.rock"; version="1.2.0"; sha256="13p3mp8m2in3cbcwgj42hgzrwxmgalc2v0z3r1zn1n77iqjvcd7r"; depends=[digest dplyr futile_options ggplot2 httr MASS reshape2]; }; lordif = derive2 { name="lordif"; version="0.3-3"; sha256="1yby9fvzdi1dzvzp6d6h144k1p9nfacd8l5bd66dmhnc8sp2nlx5"; depends=[mirt rms]; }; @@ -11738,11 +11760,12 @@ in with self; { makeProject = derive2 { name="makeProject"; version="1.0"; sha256="09q8xa5j4s5spgzzr3y06l3xis93lqxlx0q66s2nczrhd8nrz3ca"; depends=[]; }; makedummies = derive2 { name="makedummies"; version="1.2.1"; sha256="062rvijhy2dybpgxzp44cg46bfyb8lp9yasv3mhskhf3yg717sqp"; depends=[tibble]; }; makemyprior = derive2 { name="makemyprior"; version="1.0.0"; sha256="0l4xpalw13x07fr1g9h6dfcmb16dk712pp70mnshqjhy1vlq2ajp"; depends=[ggplot2 knitr MASS Matrix rlang rmarkdown shiny shinyBS shinyjs testthat visNetwork]; }; + makepipe = derive2 { name="makepipe"; version="0.0.4"; sha256="0j4iqwl2qqd4652c985yph9rv8847p6fipj1nrj2iwz77cnhg358"; depends=[cli R6 visNetwork]; }; maketools = derive2 { name="maketools"; version="1.2.0"; sha256="1i2s48s0qfk9nwkkbx5hr0q7b0c8xziyrsg1klianmk9jqfngg36"; depends=[sys]; }; malan = derive2 { name="malan"; version="1.0.2"; sha256="0qwf0r2gwpb93gzvyp8vaw7j6rhghr6nbrfp8xw876n5j5b9jhj3"; depends=[dplyr igraph magrittr Rcpp RcppArmadillo RcppProgress tibble tidygraph]; }; malani = derive2 { name="malani"; version="1.0"; sha256="1jps28gfkiysr356ackxf1my5xz6rpx3a2bv68pziy2614hrqbs9"; depends=[e1071]; }; malariaAtlas = derive2 { name="malariaAtlas"; version="1.0.1"; sha256="0k0406pn65ars4d6zlirfdd7z3rl2z82vsx5p97gmxnjjp6gjdpa"; depends=[curl dplyr ggplot2 gridExtra httr raster rgdal rlang sp stringi tidyr xml2]; }; - malaytextr = derive2 { name="malaytextr"; version="0.1.1"; sha256="1ra6grjapmx2yiy50prfxk87vx9p68i8b2ns93y9sj0nh1vdybmw"; depends=[dplyr magrittr rlang stringr]; }; + malaytextr = derive2 { name="malaytextr"; version="0.1.2"; sha256="0lal9x2syyc2qbzxy35dbmd4jyxxkqpbygg9x7nyh8vw8k7pf0jh"; depends=[dplyr magrittr rlang stringr]; }; mallet = derive2 { name="mallet"; version="1.0"; sha256="06rksf5nvxp4sizgya7h4sb6fgw3yz212a01dqmc9p5a5wqi76x0"; depends=[rJava]; }; managelocalrepo = derive2 { name="managelocalrepo"; version="0.1.5"; sha256="180b7ikas1kb7phm4l2z1d8wi45wi0qyz2c8rl8ml3f71b4mlzgc"; depends=[assertthat stringr]; }; mand = derive2 { name="mand"; version="1.0"; sha256="0mjjzrij1yizdyv5z5jsf24xhdck478iwpjx5x4mz0mhxp3nazs3"; depends=[caret imager msma oro_dicom oro_nifti]; }; @@ -11755,7 +11778,7 @@ in with self; { manipulate = derive2 { name="manipulate"; version="1.0.1"; sha256="1klknqdfppi5lf6zbda3r2aqzsghabcsaxmvd3vw3cy3aa984zky"; depends=[]; }; manipulateWidget = derive2 { name="manipulateWidget"; version="0.11.1"; sha256="1dpgzmiv08afm57yxr017b014lfn9h3pa4w65prk5k3dgn6p4wsv"; depends=[base64enc codetools htmltools htmlwidgets knitr miniUI shiny shinyjs webshot]; }; manymodelr = derive2 { name="manymodelr"; version="0.3.6"; sha256="0a444kn38qsc197f6625ds61c1aww1kwh9dvh3jppabdf691pnv5"; depends=[caret dplyr e1071 ggplot2 lme4 Metrics]; }; - maotai = derive2 { name="maotai"; version="0.2.1"; sha256="1l4379slxshk7hrg2mjrihr2k5cq1rf112m6l9pqsr5aisvjq0ab"; depends=[cluster dbscan fastcluster labdsv Matrix RANN Rcpp RcppArmadillo RcppDist Rdpack RSpectra Rtsne shapes]; }; + maotai = derive2 { name="maotai"; version="0.2.2"; sha256="10s9fcfn6i0rkfhv8bq452ianjkah6srxa5fc2ymhqzm6m1r5b3j"; depends=[cluster dbscan fastcluster labdsv Matrix RANN Rcpp RcppArmadillo RcppDist Rdpack RSpectra Rtsne shapes]; }; mapReasy = derive2 { name="mapReasy"; version="1.0"; sha256="13va0z967ckwxnnianki5aj66km0x6r37nj4mz9qd3b0bps4g2kj"; depends=[Hmisc rgdal sp]; }; mapSpain = derive2 { name="mapSpain"; version="0.4.0"; sha256="043a79q2pc4c6w01pad2zyk3chjkv26vxhlvym30qq6ipdljl0sh"; depends=[countrycode giscoR rappdirs sf]; }; mapStats = derive2 { name="mapStats"; version="2.4"; sha256="18pp1sb9p4p300ffvmzjrg5bv1i7f78mhpggq83myc26c3a593na"; depends=[classInt colorspace Hmisc lattice maptools RColorBrewer reshape2 sp survey]; }; @@ -11769,7 +11792,7 @@ in with self; { mapdeck = derive2 { name="mapdeck"; version="0.3.4"; sha256="0agbf6bs3z7gwx1dj9jqlq6cllq5b65x89lkplm5mwhr20lzwvhr"; depends=[BH colourvalues geojsonsf geometries googlePolylines htmlwidgets jsonify magrittr rapidjsonr Rcpp sfheaders shiny spatialwidget]; }; mapedit = derive2 { name="mapedit"; version="0.6.0"; sha256="1ix0sjsqb6646xyi73am9ic97plw9y9p4pl8mrkpzvqzm0pxdhxx"; depends=[dplyr htmltools htmlwidgets jsonlite leafem leaflet leaflet_extras leafpm mapview miniUI raster scales sf shiny sp]; }; mapfit = derive2 { name="mapfit"; version="0.9.7"; sha256="16a318bz3my27qj0xzf40g0q4bh9alg2bm6c8jbwgswf1paq1xmx"; depends=[Matrix]; }; - mapi = derive2 { name="mapi"; version="1.0.1"; sha256="0qfwxrd0ya5amw7f96pfxf3f8m97s7vhaz62clqn083mw8ddaz2l"; depends=[data_table pbapply Rcpp sf]; }; + mapi = derive2 { name="mapi"; version="1.0.3"; sha256="0axypjmxr0kg8wqizywdh24n51xbfjdscis5kvs78044kds99sag"; depends=[data_table pbapply Rcpp sf]; }; mapmisc = derive2 { name="mapmisc"; version="1.8.0"; sha256="0xp2ns6j8craz74jw4gjjhzkfbbihcy8d9dg1i08hiws743kzd8s"; depends=[raster sp]; }; mapping = derive2 { name="mapping"; version="1.3"; sha256="1in4fjdiass73fdh3y937c600bdbv8gwjzxb5wj07wkc76jxb5ba"; depends=[cartography curl dplyr geojsonio ggplot2 htmltools httr jsonlite leaflet leafpop leafsync mapview rgdal s2 sf stringi stringr tmap tmaptools viridisLite]; }; mappings = derive2 { name="mappings"; version="0.1"; sha256="1f7m6nbdzdcxsk4m8rh8fzrck8pzxl2lgfz5c6wramwmp8rxczzb"; depends=[]; }; @@ -11779,6 +11802,7 @@ in with self; { mapr = derive2 { name="mapr"; version="0.5.2"; sha256="0qc1zqa2yqgy777wbm6lj37vzaaxaz0gdimr62wv9fyddkbkshk4"; depends=[data_table ggplot2 gistr jsonlite leaflet maps RColorBrewer sp spocc]; }; maps = derive2 { name="maps"; version="3.4.0"; sha256="0ispkx1szgwxhr0zzhdzgqqwcgc6psg7vry4sj4rb89w76rcq63r"; depends=[]; }; mapsFinland = derive2 { name="mapsFinland"; version="0.1.1"; sha256="0kx9r28lvc6bbl478i9gyy58kbp5hi7akysyld87fxk5x0601j19"; depends=[]; }; + mapsPERU = derive2 { name="mapsPERU"; version="0.1.3"; sha256="0s3qlvf1cwc4l2g1z6h30cijsnxdyyxiprms0lvs1fxx2kf64f7i"; depends=[tibble]; }; mapsRinteractive = derive2 { name="mapsRinteractive"; version="1.0.1"; sha256="03x5mza9y5kdqshma0k7bynmd3fffayy1j243m5bhw7ln85ws73x"; depends=[gstat raster rgdal rgeos sp]; }; mapsapi = derive2 { name="mapsapi"; version="0.5.0"; sha256="0cf9ycj1a0vik0j10nif69n7rirrvkan9md55mgicw4wmcn1rs6i"; depends=[bitops magrittr RgoogleMaps sf stars xml2]; }; mapsf = derive2 { name="mapsf"; version="0.3.0"; sha256="0kyqzpk14k4qs4vqlzpsbl29wfkspd3c95mqvlzh1a8shw70jfrn"; depends=[classInt Rcpp sf]; }; @@ -11796,7 +11820,7 @@ in with self; { marginalizedRisk = derive2 { name="marginalizedRisk"; version="2021.2-4"; sha256="0kagl9xghq9nsh9qvx165j1a5plh08zxhb6nm8j402mnl8pq7a4z"; depends=[]; }; margins = derive2 { name="margins"; version="0.3.26"; sha256="0sx5xjbzz1rjz8bklfna3171s53xsh123x4bh0kmwp006v8rv309"; depends=[data_table MASS prediction]; }; marima = derive2 { name="marima"; version="2.2"; sha256="03nvh93r4052li84yjqzc106gwh1542q9s192s980gs6sgy8scm6"; depends=[]; }; - mark = derive2 { name="mark"; version="0.3.0"; sha256="0zv1bm97r1w1b8sylvdgnkvylpl1bs4q53lyv4d8zd08lilw1q97"; depends=[magrittr]; }; + mark = derive2 { name="mark"; version="0.4.0"; sha256="1jv16pbfbnayah7lrrpdq602wicy0b9iclpnsvb9ixriq2cfhi4b"; depends=[magrittr]; }; markdown = derive2 { name="markdown"; version="1.1"; sha256="06zwbrp14bri3470anadd7dvgmw06xf8df6v2pk64wx3f9sd934d"; depends=[mime xfun]; }; markdownInput = derive2 { name="markdownInput"; version="0.1.2"; sha256="1qxil2liikbbn6w8niyc03fwqvwvdv6wiy98ip8j77729i7g2hln"; depends=[markdown shiny shinyAce]; }; marked = derive2 { name="marked"; version="1.2.6"; sha256="0k367sjyac1w894rndz5m0drmbd56nzyx5mr7mvhsqzq3gnv4dw5"; depends=[bookdown coda data_table expm kableExtra knitr lme4 Matrix numDeriv optimx R2admb Rcpp TMB truncnorm]; }; @@ -11971,7 +11995,7 @@ in with self; { meditations = derive2 { name="meditations"; version="1.0.1"; sha256="0wnx3zadpngfch0sb0ifqvsmzl613639f1yazwsgvhk29mycx4ss"; depends=[]; }; medmod = derive2 { name="medmod"; version="1.0.0"; sha256="1f7bzdcjnbz9izlfblxcaa85qxx8kzn62qgjd3qlb7jl7mdy5q54"; depends=[ggplot2 jmvcore lavaan R6]; }; medrxivr = derive2 { name="medrxivr"; version="0.0.5"; sha256="19gakl39n2jch84sv35jkk4g2c0k4h3ch3l3hz1w5p94mn2jlgqr"; depends=[bib2df curl data_table dplyr httr jsonlite lubridate progress purrr rlang stringr tibble vroom]; }; - meerva = derive2 { name="meerva"; version="0.2-1"; sha256="07w52i1kpbcaykg2qywlzx86s5b4441v9qqblj1n6005zrjb9mlg"; depends=[dplyr ggplot2 matrixcalc mvtnorm survival tidyr]; }; + meerva = derive2 { name="meerva"; version="0.2-2"; sha256="1q1q6ydn1zwv8vif14qs2zgijhrdrnpx1ibd5afp2lb6yn8qd61i"; depends=[dplyr ggplot2 matrixcalc mvtnorm survival tidyr]; }; meetupapi = derive2 { name="meetupapi"; version="0.1.0"; sha256="1iaxpfzgn478np9cjwz0zalfy1p7jwabnwpfv31svw052i8bs9yl"; depends=[dplyr httr magrittr purrr]; }; mefa = derive2 { name="mefa"; version="3.2-8"; sha256="0agq3vk0dw7i6plz3killybsf8jb57fmlbh5zq1h8lgy1dqry55a"; depends=[]; }; mefa4 = derive2 { name="mefa4"; version="0.3-8"; sha256="09y8mhmcd82gz582lskvy0yx6vh6jjyxmh7i35041knqcjyp6lpc"; depends=[Matrix]; }; @@ -12058,10 +12082,10 @@ in with self; { metapower = derive2 { name="metapower"; version="0.2.2"; sha256="1r6mmdxxi83isjjyfzblwpzfgqdmfhbqmq49zm2b4jd0zvc0lfcx"; depends=[cowplot dplyr ggplot2 knitr magrittr rlang testthat tidyr]; }; metaprotr = derive2 { name="metaprotr"; version="1.2.2"; sha256="1iz5aqd8ha0h19sa58s7xd4h26lbqp68dxy93pxnx9bj3bv615b3"; depends=[ade4 dendextend dplyr ggforce ggrepel reshape2 stringr tidyverse]; }; metarep = derive2 { name="metarep"; version="1.0.1"; sha256="0jnxx11jxj63ry0bkjlh9g2x2pr2qi24nql99iibz2ckbx8344p3"; depends=[meta]; }; - metasens = derive2 { name="metasens"; version="0.6-0"; sha256="05ghc5jajzl540knm0vzvlmp3nl0b0arm09wacxwid800sm2dzga"; depends=[meta]; }; + metasens = derive2 { name="metasens"; version="1.0-0"; sha256="1f0bjfm8bbmpgi1ng4k7g38hryzv9yyaw8r6rsxzafc31mcwm7vm"; depends=[meta]; }; metatest = derive2 { name="metatest"; version="1.0-5"; sha256="1h3dcs1m7606b3a41yw2lak3lrqmsbpnx67qv24wvq003apz1sfd"; depends=[]; }; metathis = derive2 { name="metathis"; version="1.1.1"; sha256="0vac4sjlbz1cpdx0yc6q52mj174xay5j81cl5f4z2q9in0jy8f8b"; depends=[htmltools knitr magrittr purrr]; }; - metavcov = derive2 { name="metavcov"; version="2.1.1"; sha256="1ymna7w29aq539jlnfwm4pzrk6iba6a910d9q0ir944dg94r8vjk"; depends=[ggplot2 mice]; }; + metavcov = derive2 { name="metavcov"; version="2.1.2"; sha256="1jf4xig6lshf5kda4cj7w72121jp8bq52f4752bl8sxgnfqgfkr5"; depends=[ggplot2]; }; metaviz = derive2 { name="metaviz"; version="0.3.1"; sha256="0jvv49rw66v7saj2y1q88rp6fyzq7473af5d3k77ymvjbpqyrbyz"; depends=[dplyr ggplot2 ggpubr gridExtra metafor nullabor RColorBrewer]; }; metawho = derive2 { name="metawho"; version="0.2.0"; sha256="1mflkrlnb1wk9vbbj621cy64s78q677d8fcnsi1ybh49k7sqmw20"; depends=[dplyr forestmodel magrittr metafor purrr rlang]; }; meteR = derive2 { name="meteR"; version="1.2"; sha256="02637d3dnfq0jv9d74y99x7ms89y3jcmkpazc44g44sa7jx4i510"; depends=[distr nleqslv]; }; @@ -12071,6 +12095,7 @@ in with self; { meteoland = derive2 { name="meteoland"; version="0.9.7"; sha256="0m2q451zgvimd3xx3h66c3blzp7r5waj8ddb9p8hg5aj3drq2l8p"; depends=[httr jsonlite ncdf4 Rcpp rgdal sp spdep]; }; meteor = derive2 { name="meteor"; version="0.3-4"; sha256="01009d9wpxybig4n82m48hqqg1k4x4shcjxfy8y0kk7cgfdb4naw"; depends=[Rcpp]; }; meteorits = derive2 { name="meteorits"; version="0.1.1"; sha256="1vk8pbhfc5mbkbpw7ml81gx9i8187xp3vx36pbyyhjbrpy6gqabx"; depends=[MASS pracma Rcpp RcppArmadillo]; }; + meteospain = derive2 { name="meteospain"; version="0.0.2"; sha256="15wmf5w8p7j0bmgmkjsyr6jb9ss941vhvgg2zl5bc3975z4czjyg"; depends=[assertthat crayon dplyr glue httr jsonlite lubridate magrittr purrr rlang sf stringr tidyr units vctrs xml2]; }; methcon5 = derive2 { name="methcon5"; version="0.1.0"; sha256="08xsi6j65izxqcrlh37f2d7m3pwna1v6zvdv96mqylsjqgqmbk5x"; depends=[dplyr magrittr purrr rlang]; }; metools = derive2 { name="metools"; version="1.0.0"; sha256="05l49ifx2nnlbdxh2qhdb0islf95fc67720rm5in7mrlida4khnq"; depends=[ggplot2 lubridate scales stringr tibble tidyr]; }; metricsgraphics = derive2 { name="metricsgraphics"; version="0.9.0"; sha256="1zbx82b34y0rr4w7rzvyc1nzk95w6cdkg0j1kkshbmkvplq6v9i4"; depends=[htmltools htmlwidgets magrittr]; }; @@ -12133,7 +12158,7 @@ in with self; { microPop = derive2 { name="microPop"; version="1.5"; sha256="1gikp20n2b50fkybbg2hmlfjdcm0imjwygjsjnyv3wrjzypm2i78"; depends=[deSolve]; }; microSTASIS = derive2 { name="microSTASIS"; version="0.1.0"; sha256="09zyf80l964lfil56vln70i0r2d8ry2ffx4zz3f3xcka22m94r78"; depends=[crayon fmsb future future_apply ggplot2 ggside progressr reshape2 stringr]; }; microbats = derive2 { name="microbats"; version="0.1-1"; sha256="1mahvblaiwg1xk2s34wd1ic8ddc9lh6g0azik2pd97bsf0krkyw8"; depends=[]; }; - microbenchmark = derive2 { name="microbenchmark"; version="1.4-7"; sha256="1xl4m4yl4h2zcjiz8wsa7f3sh55qg2xr3sgpvz18rlix6b3173r6"; depends=[]; }; + microbenchmark = derive2 { name="microbenchmark"; version="1.4.8"; sha256="0gqkxf31my5dchv81yjnvk9gpziihc4p6dbvw01586xbi16vdbp1"; depends=[]; }; microbial = derive2 { name="microbial"; version="0.0.19"; sha256="0pf8rdr7fdfalx28hqkfzrgwdia956d3cksz58bbf75hsiay8vak"; depends=[Biostrings broom dada2 DECIPHER DESeq2 dplyr edgeR ggplot2 ggpubr magrittr MASS phangorn phyloseq plyr randomForest rlang rstatix S4Vectors SummarizedExperiment testthat tidyr vegan]; }; microclass = derive2 { name="microclass"; version="1.2"; sha256="0q6mn1hbi6nk29x2x5a1wcdqp06mjggbrpglk5i8pp4gkqlzhl8q"; depends=[dplyr microcontax microseq Rcpp RcppEigen RcppParallel rlang stringr tibble]; }; microclustr = derive2 { name="microclustr"; version="0.1.0"; sha256="04xn8p4wgmxq1jbxawq0rhx6l7y1kddlbdfid8zsi4x4arkz7hvp"; depends=[Rcpp]; }; @@ -12146,7 +12171,7 @@ in with self; { micropan = derive2 { name="micropan"; version="2.1"; sha256="16zs6sqi2c5lwzhd5gbyddp8q4gx5r5sg0pbpk7924i8x4hh081h"; depends=[dplyr igraph microseq rlang stringr tibble]; }; microplot = derive2 { name="microplot"; version="1.0-44"; sha256="1sx3544yvv5dxpgqw1582574z1vcxh9rc82x1z37ad7ayzxyyb1v"; depends=[cowplot flextable ggplot2 HH Hmisc htmltools lattice officer]; }; microsamplingDesign = derive2 { name="microsamplingDesign"; version="1.0.8"; sha256="0swaqvzqbmlk9j2gr8z7x7xrkr38xndprg9k66whzcigxfh8nhiz"; depends=[abind deSolve devtools ggplot2 gridExtra gtools knitr MASS matrixcalc matrixStats plyr Rcpp RcppArmadillo readr reshape2 shiny stringr]; }; - microseq = derive2 { name="microseq"; version="2.1.4"; sha256="1cjwcg4mzsn2w3js2vhfjzbjax756xbwngw9fyjn1i4zfl0l8fbz"; depends=[data_table dplyr Rcpp rlang stringr tibble]; }; + microseq = derive2 { name="microseq"; version="2.1.5"; sha256="1asdy0njy5xcykd88jxa8s5hkrh6kab566h3nf9i93yw1i6kmwip"; depends=[data_table dplyr Rcpp rlang stringr tibble]; }; microservices = derive2 { name="microservices"; version="0.1.2"; sha256="18inmqwdb2cz0i0q9rh7mm3bi0hg193kkipbzhgk0bk8i8gkdy84"; depends=[config desc dplyr glue purrr withr]; }; microsimulation = derive2 { name="microsimulation"; version="1.3.5"; sha256="0fg3b1jq3igv6y76d97wjzwy7gxscbislfiv7kpc694i32hphygz"; depends=[ascii BH Rcpp]; }; microsynth = derive2 { name="microsynth"; version="2.0.31"; sha256="0wmrp9igylzp4qbvdr13r2rxfkcq9xwg8gw29j1g6kcqyq4aflds"; depends=[boot kernlab LowRankQP nleqslv pracma survey]; }; @@ -12156,8 +12181,8 @@ in with self; { midastouch = derive2 { name="midastouch"; version="1.3"; sha256="1pjzcf0hjfhr5p0la8pz1njw7bhfrcrzpqfsdqk2z5c6dbh4awzq"; depends=[]; }; midrangeMCP = derive2 { name="midrangeMCP"; version="3.1.1"; sha256="1yfwyglyxxk4i914m8n148cjydlcg7r16zl8acb1w8h963svirk9"; depends=[SMR writexl xtable]; }; mifa = derive2 { name="mifa"; version="0.2.0"; sha256="1rj3ba746f8759gird0vpvyb4fl0z2ihccpiv3qkr3sc64wgplln"; depends=[checkmate dplyr mice]; }; - migest = derive2 { name="migest"; version="2.0.0"; sha256="05rw0z149pafna8kjms33hk1bggrjhv4x3d4j4c55qih4kjs2m3i"; depends=[dplyr forcats ggplot2 magrittr matrixStats migration_indices purrr stringr tibble tidyr]; }; - migraph = derive2 { name="migraph"; version="0.7.1"; sha256="1r55s4drfc2nvlkmxry5x1nc9iasach4nvqj77pmj2r6hnxqd6dx"; depends=[dplyr ggplot2 ggraph gridExtra httr igraph jsonlite lubridate magrittr network purrr rlang stringr tibble tidygraph tidyr]; }; + migest = derive2 { name="migest"; version="2.0.1"; sha256="0za96d4zyjvxga3686sar4aff3h5s5wnykbfiqp364qdlvh1bd0v"; depends=[circlize dplyr forcats magrittr matrixStats migration_indices purrr stringr tibble tidyr]; }; + migraph = derive2 { name="migraph"; version="0.8.5"; sha256="03sxprzjh32b9q7c5d75vhycvjpw45iwgspn901m773419npw51g"; depends=[concaveman dplyr ggdendro ggforce ggplot2 ggraph gridExtra igraph magrittr network purrr RColorBrewer readxl rlang sna stringr tibble tidygraph tidyr]; }; migrate = derive2 { name="migrate"; version="0.4.0"; sha256="0yf0c7gcn2q8sx0havhqaxk6z69bagfd58drpbqkkpsp62bnq875"; depends=[dplyr magrittr rlang tibble tidyr]; }; migration_indices = derive2 { name="migration.indices"; version="0.3.0"; sha256="0h0yjcj70wzpgrv3wl1f2h2wangh1klsllq0i0935plgzw736mwd"; depends=[calibrate]; }; migui = derive2 { name="migui"; version="1.1"; sha256="1qchjsc7ff2b6s9w6ncj9knjv6pyp90jd4jxljn2rr1ix1gc45za"; depends=[arm gWidgets2 mi]; }; @@ -12178,7 +12203,7 @@ in with self; { miniGUI = derive2 { name="miniGUI"; version="0.8-1"; sha256="0qb2fbkjwzn909yrk89d4951bwf8n05i0s265l8v2d4lpns9hc2i"; depends=[]; }; miniMeta = derive2 { name="miniMeta"; version="0.2"; sha256="03r6xwcgchw42irqr8jy5hsbv8brk6f77h4zi9qhhz3zmkryjbw2"; depends=[colourpicker jsonlite markdown meta metafor readxl rhandsontable shiny shinyjs shinyWidgets WriteXLS]; }; miniUI = derive2 { name="miniUI"; version="0.1.1.1"; sha256="1h5h2sc57h95d6bsgs95l26911g38hvjc1v50bc31xl9689l2as5"; depends=[htmltools shiny]; }; - minidown = derive2 { name="minidown"; version="0.2.0"; sha256="18s7p3fdiichz4jfx9v73ddx6gsbvh8n85v0jmnkmz4pkxx371dr"; depends=[htmltools knitr mime rmarkdown xfun]; }; + minidown = derive2 { name="minidown"; version="0.3.0"; sha256="1x0xsag8lbghnbgjlwd73m24cpvil75056pl3j2fhhsydbikhifw"; depends=[htmltools knitr mime rmarkdown xfun]; }; minimalRSD = derive2 { name="minimalRSD"; version="1.0.0"; sha256="1p1jpi8lnv952k4c1wjgbgpb0hv4zg0f9qrd43cx0caibkqvhzf7"; depends=[]; }; minimap = derive2 { name="minimap"; version="0.1.0"; sha256="0y5yzic9pwpzs01gnl82syankijcjp85n22jn5zda0bp3y01r53r"; depends=[]; }; minimax = derive2 { name="minimax"; version="1.0"; sha256="1g0d9q5h1avbb0yg7ajw5330820i3n5cgkpsif754l4j3ikya8p3"; depends=[]; }; @@ -12267,7 +12292,7 @@ in with self; { mkin = derive2 { name="mkin"; version="1.0.5"; sha256="1nxdzll5v8551sgq0whqs2270lzvw923rl0kxvxbcwnsz27z26da"; depends=[deSolve inline lmtest nlme numDeriv pkgbuild purrr R6]; }; mknapsack = derive2 { name="mknapsack"; version="0.1.0"; sha256="1kzmx7d512681a4hjirfgcd7a8rvndb4da66p16gms5nnxzsby9c"; depends=[assertthat data_table lpSolve]; }; mkssd = derive2 { name="mkssd"; version="1.1"; sha256="1qqzy6fn6sc3lxahc19hzzf1hzxsyvxqi7npynw0vkknlrvh2ijp"; depends=[]; }; - mlVAR = derive2 { name="mlVAR"; version="0.4.4"; sha256="0ib566qygm28lqhr3w9vzfxnpsmazlipzrfsdm3cw21wpz2lvxcr"; depends=[abind arm clusterGeneration corpcor dplyr graphicalVAR lme4 MplusAutomation mvtnorm plyr qgraph]; }; + mlVAR = derive2 { name="mlVAR"; version="0.5"; sha256="11mn7gaqlmw01gvg7psqkkr5bgv4iclv0590av4xzbvq8496f5g2"; depends=[abind arm clusterGeneration corpcor dplyr graphicalVAR lme4 MplusAutomation mvtnorm plyr qgraph rlang]; }; mlapi = derive2 { name="mlapi"; version="0.1.0"; sha256="023vk5bp8cjcq88sapkl87kdxr92bay1dyxl6xirnyj699pyj51k"; depends=[Matrix R6]; }; mlbench = derive2 { name="mlbench"; version="2.1-3"; sha256="157iqsld0wj8g8cbs7nh6p2x6kasmkhs3078hsmqac946gk2pydi"; depends=[]; }; mlbstats = derive2 { name="mlbstats"; version="0.1.0"; sha256="1pfsc1pc5986gykx8l6afahszhaj4940l8g33fdxyy7194kbcz70"; depends=[]; }; @@ -12309,7 +12334,7 @@ in with self; { mlr3misc = derive2 { name="mlr3misc"; version="0.9.4"; sha256="14lcpvxrrl68l3khmy5r266b7yjjlg97pz4xvha0ypx8hlpbqik2"; depends=[backports checkmate data_table digest R6]; }; mlr3oml = derive2 { name="mlr3oml"; version="0.5.0"; sha256="1w4hjzzmy968mzgyg6ybcpq09n9zkhiwi2ccm41rvwaysl27rgfd"; depends=[backports checkmate curl data_table jsonlite lgr mlr3 mlr3misc R6 stringi]; }; mlr3pipelines = derive2 { name="mlr3pipelines"; version="0.3.6-1"; sha256="00v39y50krmjbmk63j7kc8zgdkwi2m4l6r7j5913ghiy9f9394wc"; depends=[backports checkmate data_table digest lgr mlr3 mlr3misc paradox R6 withr]; }; - mlr3proba = derive2 { name="mlr3proba"; version="0.4.1"; sha256="1pq6ihbyz4czgykrdb0bss6h88dpprjc07xdgizrjhx7lpi61vm8"; depends=[checkmate data_table distr6 mlr3 mlr3misc paradox R6 Rcpp survival]; }; + mlr3proba = derive2 { name="mlr3proba"; version="0.4.2"; sha256="01k49spc52i8bnwi61b1knw0xnll4hgd489pswfdm7367yskhb2r"; depends=[checkmate data_table distr6 mlr3 mlr3misc paradox R6 Rcpp survival]; }; mlr3shiny = derive2 { name="mlr3shiny"; version="0.2.0"; sha256="0s581aqi3a3kg35db0gnsmmg62zwl5bij4vbszjhc63i3xg0ayiz"; depends=[data_table DT e1071 mlr3 mlr3learners mlr3measures plyr purrr ranger readxl shiny shinyalert shinydashboard shinyjs shinythemes shinyWidgets stringr]; }; mlr3spatiotempcv = derive2 { name="mlr3spatiotempcv"; version="1.0.0"; sha256="0y04w96xk3m786aamqv9p91gqqyi19dc0shgkwlba32lkd5rqj0w"; depends=[checkmate data_table ggplot2 mlr3 mlr3misc paradox R6]; }; mlr3tuning = derive2 { name="mlr3tuning"; version="0.9.0"; sha256="0i428kdbak81j1wlwmdf9y40hqi63azhyny802ms2z04wl8lwnvs"; depends=[bbotk checkmate data_table digest lgr mlr3 mlr3misc paradox R6]; }; @@ -12326,7 +12351,7 @@ in with self; { mltest = derive2 { name="mltest"; version="1.0.1"; sha256="14gyssfph088v936mpywmd4y8z9vdv0zk8638vlg23j8cf5j4al2"; depends=[]; }; mltools = derive2 { name="mltools"; version="0.3.5"; sha256="045v28w7vz1zjxim8vfc6ncvg2mavr1q332x0hzlqpfzrk7gz4vh"; depends=[data_table Matrix]; }; mlxR = derive2 { name="mlxR"; version="4.2.0"; sha256="0pr564376q7pn0wbbw5q9mjfzdc0bpq1g4xj0bcdmb64binqllvb"; depends=[ggplot2]; }; - mma = derive2 { name="mma"; version="10.5-0"; sha256="1n4p67s8vyaz3vj8f24lccg2mr4lmbqka6aj862bnzai9vljrjvq"; depends=[car gbm gplots lattice plotrix survival]; }; + mma = derive2 { name="mma"; version="10.5-1"; sha256="0frkx85f2wxp2a7hlmgjw4zs2ryl7lk2ihlb5bby6qchza8i6hgy"; depends=[car gbm gplots lattice survival]; }; mmabig = derive2 { name="mmabig"; version="3.0-0"; sha256="032xphcrcwp9n3i8rcn4ipvvjmgh9qwmkdml40rx9fhg43qr31n1"; depends=[car glmnet gplots mma survival]; }; mmand = derive2 { name="mmand"; version="1.6.1"; sha256="19s6v083iry95akhc2ccj617sjcddalb6dp87j3lqjlgybxws62q"; depends=[Rcpp]; }; mmap = derive2 { name="mmap"; version="0.6-19"; sha256="0s3vlwdcwifl2a2byr0f2cc4vmbdparc55x889a3h115ga7k91w2"; depends=[]; }; @@ -12434,7 +12459,7 @@ in with self; { monitoR = derive2 { name="monitoR"; version="1.0.7"; sha256="1h1g0m1j13mz37xxwck4s7a0bfqvi0nrzfw60j7bkzaah8zxcc9n"; depends=[tuneR]; }; monmlp = derive2 { name="monmlp"; version="1.1.5"; sha256="19cx60csm8mnf6ksg64vlhi8wi1c7bmv9l55y9zmaljblr0kmzxf"; depends=[optimx]; }; monoClust = derive2 { name="monoClust"; version="1.2.1"; sha256="18zb4wfb09rpzzr9bc0nr71994nhgsk74s512dxlss50isvfqjqd"; depends=[cluster doParallel dplyr foreach ggplot2 permute purrr rlang stringr tibble tidyr]; }; - monobin = derive2 { name="monobin"; version="0.1.1"; sha256="139mlfiaf64g2arsh3b4zivppxgrk38i7iyw1qli1zc1rdqhfrf4"; depends=[dplyr Hmisc]; }; + monobin = derive2 { name="monobin"; version="0.2.0"; sha256="1ajxh0p685p143y2wjg2gp35dvxbyq6921x3kz3znl0c1x4z6hgs"; depends=[dplyr Hmisc]; }; monobinShiny = derive2 { name="monobinShiny"; version="0.0.9"; sha256="0cd54zqj4y8ii2m5jhn5fz77zylfds030rhf709wlmgj96s0i750"; depends=[dplyr DT monobin shiny shinydashboard shinyjs]; }; monographaR = derive2 { name="monographaR"; version="1.2.1"; sha256="09fkcw13h7dx7j5vyp48fk6yzv9n64568zf2zvmm2c008jw3gkbm"; depends=[circular maptools png raster rmarkdown sp]; }; monomvn = derive2 { name="monomvn"; version="1.9-13"; sha256="1hm5qf28bh0q7f4zcjqx1qxw3l8hzkx349c1y3nwyfg7436vff6a"; depends=[lars MASS mvtnorm pls quadprog]; }; @@ -12448,8 +12473,8 @@ in with self; { mopsocd = derive2 { name="mopsocd"; version="0.5.1"; sha256="10hssnm1afqmxa9kw6ifqnz3p3yyjrmxgi98zlj31a5g4nis8wb1"; depends=[]; }; moreparty = derive2 { name="moreparty"; version="0.2.1"; sha256="0p30skq5x3rz3xbp2izq44v5c0byw7cw2han6bardah7xniz3w2d"; depends=[foreach ggplot2 iml MASS measures party partykit pdp plyr rlang varImp vip]; }; morgenstemning = derive2 { name="morgenstemning"; version="1.0"; sha256="17y90cf8ajmkfwla0hm4jgkbkd1mxnym63ph2468sfxkhn0r3v88"; depends=[]; }; - morphemepiece = derive2 { name="morphemepiece"; version="1.0.1"; sha256="1cja9lqzf90ixgr8b2j3mpgyxhynkcxmm8wl8kniifd2vp7ganbd"; depends=[dlr magrittr morphemepiece_data piecemaker purrr rlang stringr]; }; - morphemepiece_data = derive2 { name="morphemepiece.data"; version="1.0.0"; sha256="1dnjav7s23ang120csjy2qkjzhplvgcnmfii7xk8viklsv27cgcl"; depends=[]; }; + morphemepiece = derive2 { name="morphemepiece"; version="1.1.0"; sha256="0mqi80b3j5v0ybi6j2kwc6gfm1b9sc06x81m52lmlf0wrxw2np0f"; depends=[dlr magrittr morphemepiece_data piecemaker purrr readr rlang stringr]; }; + morphemepiece_data = derive2 { name="morphemepiece.data"; version="1.1.0"; sha256="1mc2isjv4zfsks6y46mnfqhm37p13rnhddzx1kwkp2jllhq0d3f9"; depends=[]; }; morpheus = derive2 { name="morpheus"; version="1.0-1"; sha256="1zfx24ndlky0b6vg6an9vcjw955ms749dwb51x9gsj2m8vgrbpnn"; depends=[jointDiag MASS pracma]; }; morphomap = derive2 { name="morphomap"; version="1.3"; sha256="12jqrabx8vgkrfwcv4845jbf79ibg5iqzzzr4x4vybb4b2p2wd2i"; depends=[Arothron colorRamps DescTools geometry lattice mgcv Morpho oce raster rgdal rgl Rvcg sp]; }; morse = derive2 { name="morse"; version="3.3.1"; sha256="0p7a5p31i0lw0y84nk3ar2211rvlj5y96qq2lmmrrab17pcikg24"; depends=[coda deSolve dplyr epitools ggplot2 gridExtra magrittr reshape2 rjags tibble tidyr zoo]; }; @@ -12503,7 +12528,7 @@ in with self; { mra = derive2 { name="mra"; version="2.16.11"; sha256="0268msdy4cs2ifpagmwiabi6aav54ckn214ai18aqv2h97hmixw0"; depends=[]; }; mratios = derive2 { name="mratios"; version="1.4.2"; sha256="18pi0dks0qmw0gv76yqm4gvxdqrcvr25j1vb8k4mkp5p35kzkzff"; depends=[multcomp mvtnorm survival survPresmooth]; }; mrbayes = derive2 { name="mrbayes"; version="0.5.1"; sha256="11n3d18di01vmwqs5a0i1h8839aammzbcavi1jk58bmrwb3l771j"; depends=[BH plyr Rcpp RcppEigen rstan rstantools StanHeaders]; }; - mrbin = derive2 { name="mrbin"; version="1.6.0"; sha256="19xb5assji5zlv93s2iig7nz5df47bmp5jc5iwg24z2sw367qjwl"; depends=[]; }; + mrbin = derive2 { name="mrbin"; version="1.6.1"; sha256="09rqvd9qakn2868f2l6f50gg0y8vwpp2pgkwp006jnk06bylrdfh"; depends=[]; }; mrbsizeR = derive2 { name="mrbsizeR"; version="1.2.1.1"; sha256="0v06sd5sh7ghlr8lgrv6l4glmv7chj3951pw4ssxrly4hz2rh6i0"; depends=[fields maps Rcpp]; }; mrds = derive2 { name="mrds"; version="2.2.5"; sha256="1659nzdykl4mgfgyniwnwrn1a0m6wiz7c02ygwpm90bnz8f4g5y2"; depends=[mgcv numDeriv optimx Rsolnp]; }; mreg = derive2 { name="mreg"; version="1.1"; sha256="06la0yy2yys161jhlzlcm5lcv0664wm6sa8gjdnpd1s1nx52jkqf"; depends=[]; }; @@ -12608,7 +12633,7 @@ in with self; { multicon = derive2 { name="multicon"; version="1.6"; sha256="16glkgnm4vlpxkhf1xw1gl1q10yavx9479i21v29lldag35z8pqx"; depends=[abind foreach mvtnorm psych sciplot]; }; multicool = derive2 { name="multicool"; version="0.1-12"; sha256="0djacq0irfqz4nlnx238kja73yvr1n5qybbfyl6bw1n6qgcjhza8"; depends=[Rcpp]; }; multicross = derive2 { name="multicross"; version="2.1.0"; sha256="17hk03wsms9ij6hp6dw77cvvngdb5i66is6pcl1q21pyp327zqi6"; depends=[crossmatch MASS Matrix nbpMatching]; }; - multid = derive2 { name="multid"; version="0.1.0"; sha256="07nj420vfgk7whr9gvbb3cr4hy92cfwzbb9g63n5chw2wbf358d2"; depends=[dplyr glmnet]; }; + multid = derive2 { name="multid"; version="0.2.0"; sha256="1vkrrnj9dmgljxxy975pdisf8lwnn1bsfz5835pji2ivnrj0y66s"; depends=[dplyr glmnet pROC]; }; multidplyr = derive2 { name="multidplyr"; version="0.1.0"; sha256="1a0ird0v7i09wd734i6cs31p14ixhrnv282br2k2q5akkpcxgfny"; depends=[callr crayon dplyr magrittr qs R6 rlang tibble vctrs]; }; multifamm = derive2 { name="multifamm"; version="0.1.1"; sha256="09s6hnyi5x48yp97499zai7b959ylkk17zbbc6d8a71ynvfas8ir"; depends=[data_table funData MFPCA mgcv sparseFLMM zoo]; }; multifear = derive2 { name="multifear"; version="0.1.2"; sha256="15nxyb17qzwld3ngw5k60nsr5nnam09jc1ky87rvsvslj6f3v696"; depends=[BayesFactor bayestestR bootstrap broom dplyr effectsize effsize esc ez forestplot ggplot2 nlme purrr reshape2 stringr tibble]; }; @@ -12633,6 +12658,7 @@ in with self; { multinomineq = derive2 { name="multinomineq"; version="0.2.1"; sha256="09h5nccfcrnl78rdxwsw5cqirfq40a6x4dmpkibc475z3xndk2rm"; depends=[coda quadprog Rcpp RcppArmadillo RcppProgress RcppXPtrUtils Rglpk]; }; multipanelfigure = derive2 { name="multipanelfigure"; version="2.1.2"; sha256="0cm5bd7k0fx6d3gybcll6vvh14byanyk6dj4civqij7psa48iagc"; depends=[assertive_base assertive_files assertive_numbers assertive_properties assertive_types ggplot2 gridGraphics gtable magick magrittr stringi]; }; multipleNCC = derive2 { name="multipleNCC"; version="1.2-2"; sha256="0bnc14l5b3x68qnwf3ma8wrclmp6n7fxsc0sbd7cfaayhp8dzcb1"; depends=[mgcv survival]; }; + multiplestressR = derive2 { name="multiplestressR"; version="0.1.1"; sha256="167ch16bdlk4syjbgn1149q1np90w6299ph35p9npdh1zcynm95f"; depends=[ggplot2 patchwork viridis]; }; multiplex = derive2 { name="multiplex"; version="2.9.6"; sha256="0dy34ijdk83gjmmwjwkdzpr0wzrcg4xpw5s08jv59af1asyrr3n7"; depends=[]; }; multipol = derive2 { name="multipol"; version="1.0-7"; sha256="1rkrg3kayxa05jayg8bk1mm3hcvi76570wqfja5953hd9j4krgha"; depends=[abind]; }; multirich = derive2 { name="multirich"; version="2.1.3"; sha256="1vv4jhhq46wp6znfv9c47q9z4smn1c560wnbp77qfhiix098wzfj"; depends=[]; }; @@ -12666,7 +12692,7 @@ in with self; { mutSignatures = derive2 { name="mutSignatures"; version="2.1.1"; sha256="0skw92633mwckkkgkncfv09wvnr910nf4wdbqz0a61cl7mxlsr25"; depends=[cluster doParallel foreach ggplot2 pracma proxy]; }; mutoss = derive2 { name="mutoss"; version="0.1-12"; sha256="1yk7p7pb2xm38d3j19ysgwmix48lvimbhkhjjwk5jmr1a0ysx298"; depends=[multcomp multtest mvtnorm plotrix]; }; mutossGUI = derive2 { name="mutossGUI"; version="0.1-11"; sha256="08pcca9gzns83az6jbjzv4xhm1wgmchhzz4f54x1aq0nmvsz3qq1"; depends=[CommonJavaJars JavaGD JGR multcomp mutoss plotrix rJava]; }; - mutualinf = derive2 { name="mutualinf"; version="1.1.1"; sha256="07wlmdjn2q4g7dy2kz8mabkm8i9l18k4k2qxwm38q54436aacczc"; depends=[data_table]; }; + mutualinf = derive2 { name="mutualinf"; version="1.1.2"; sha256="01l3xvq1k5amw4cncni7fcl1v5x8fgwm0cn6mgc10kpwibadyh6d"; depends=[data_table runner]; }; mvGPS = derive2 { name="mvGPS"; version="1.2.1"; sha256="0xbawr5fgqc5z7kz97smq1p3icvr9gjkwgb07nkqwri1isgk5rr4"; depends=[CBPS cobalt gbm geometry MASS matrixNormal Rdpack sp WeightIt]; }; mvLSW = derive2 { name="mvLSW"; version="1.2.4"; sha256="04x0b8b7r4lmpmxvjckbvixd34nxjmj13in1gwdhf6gzn2k7p830"; depends=[fields wavethresh xts zoo]; }; mvMISE = derive2 { name="mvMISE"; version="1.0"; sha256="0lnc5g3ksl5cvwylh8p8baxyvq3z32a2i337q7lhg00j031ccy5c"; depends=[lme4 MASS]; }; @@ -12706,7 +12732,7 @@ in with self; { mvtsplot = derive2 { name="mvtsplot"; version="1.0-1"; sha256="0g5grrha77rsnkfasw5pxnpmkl7vgb728ms8apyg8xnbmgilg9vv"; depends=[RColorBrewer]; }; mwTensor = derive2 { name="mwTensor"; version="0.99.5"; sha256="11zn2g1gxl1x6ci3wqkr7a37jwc4rdcbgdagy5gf3jgkmmr5an3w"; depends=[ccTensor ica igraph MASS nnTensor rTensor]; }; mwa = derive2 { name="mwa"; version="0.4.3"; sha256="100d3c1070ir64iv848kws5fna141gcq5p66ip873cr632a042qs"; depends=[cem MASS rJava]; }; - mwaved = derive2 { name="mwaved"; version="1.1.7"; sha256="0g0yddsgdfyvqaj59qi6k3sknpbppdmgvq0rgnil5q8ki5skvgis"; depends=[Rcpp shiny]; }; + mwaved = derive2 { name="mwaved"; version="1.1.8"; sha256="092sqd9harx289bgghw9x495llzhab0vkgkjka5jhi4ad1rfk3vh"; depends=[Rcpp shiny]; }; mwshiny = derive2 { name="mwshiny"; version="2.1.0"; sha256="0c1a0d9qnaszffhzanmk31mdxqi7j3rn6bk7a3dwg4bq1da3rlgl"; depends=[htmltools shiny]; }; mxkssd = derive2 { name="mxkssd"; version="1.1"; sha256="0m9763dqrk8qkrvp18bsv96jv0xhc2m8sbxdk6x3w6kdjcl663p2"; depends=[]; }; mxmmod = derive2 { name="mxmmod"; version="1.1.0"; sha256="0x4m6y4ngb3vm9xpvwvn1zcbch2fhz8pb267hg2sb3kk5m504xxq"; depends=[OpenMx]; }; @@ -12781,7 +12807,6 @@ in with self; { ncvreg = derive2 { name="ncvreg"; version="3.13.0"; sha256="04r7nf6516wi0bfxgk5rgbkw6qqa8aprsjivvgym19z9i6qaxanm"; depends=[]; }; ndjson = derive2 { name="ndjson"; version="0.8.0"; sha256="0lvzbgfi1sg4kya1mvv67z14qk3vz9q57x22qh57xq8ampdkg812"; depends=[data_table Rcpp tibble]; }; ndl = derive2 { name="ndl"; version="0.2.18"; sha256="0b235v6jf98rrqp5aqw3jkk7mq8dbqmhb758zbzza1mavh4n2k7s"; depends=[Hmisc MASS Rcpp]; }; - ndtv = derive2 { name="ndtv"; version="0.13.1"; sha256="18d51xp62fis63p2prybhigxx03yhbrzs0k1yhh9j21548wzhb2l"; depends=[animation base64 jsonlite MASS network networkDynamic sna statnet_common]; }; nearfar = derive2 { name="nearfar"; version="1.2"; sha256="116rq797a5fascirz8xg465fywjf40j1k5czryvqzpik0if0w00r"; depends=[car GenSA MASS nbpMatching]; }; neariso = derive2 { name="neariso"; version="1.0.1"; sha256="1b2gnws75kkqsi8mg9n0zzdaawx57a6zz47cswabj5m6nb09ikh8"; depends=[]; }; neat = derive2 { name="neat"; version="1.2.3"; sha256="0mdv47l50wzxnjfk1sway7gzpkyf57svqip16fqn0hrc1fsrifbn"; depends=[igraph]; }; @@ -12806,7 +12831,7 @@ in with self; { nestr = derive2 { name="nestr"; version="0.1.1"; sha256="1azk3rjr9kkdqw1z5v49gmwd7i31jdmx332jpdnys6vwqci52zk0"; depends=[magrittr rlang tidyselect vctrs]; }; net4pg = derive2 { name="net4pg"; version="0.1.0"; sha256="0aqagzrycgm6qnappbgi6pin10gnf9h3gj39wnncdsb2nf417ynr"; depends=[data_table graph magrittr Matrix]; }; netClust = derive2 { name="netClust"; version="1.0.1"; sha256="1h58ispdx8ddsnqrrmcxn2rbqb0hb89gpjg4p14mr7vhxw5c9zva"; depends=[Rcpp RcppArmadillo]; }; - netCoin = derive2 { name="netCoin"; version="1.2.21"; sha256="15f75994z25c25kh6888b6nz2pcf3yg76f0iscz8bgp2jwcm7ym2"; depends=[haven igraph Matrix]; }; + netCoin = derive2 { name="netCoin"; version="2.0.20"; sha256="1kmv8sfzyh7cgp4s86rw4znjqpckgw8xiqs6a144g7k2vlfm28fk"; depends=[haven igraph Matrix rD3plot]; }; netSEM = derive2 { name="netSEM"; version="0.5.1"; sha256="0k4ngl4p1v2rp1sf2x65m7p0cd6ha98fyx21b73ki0531q0d9fil"; depends=[DiagrammeR DiagrammeRsvg gtools htmlwidgets knitr magrittr MASS png rsvg segmented svglite]; }; netassoc = derive2 { name="netassoc"; version="0.6.3"; sha256="1hyshnbpq60a3y13b4sh1c2rk78x09q01b7q6xrgv10w7bn9r2sg"; depends=[corpcor huge igraph infotheo vegan]; }; netchain = derive2 { name="netchain"; version="0.2.0"; sha256="1skpf1n6a17mjkcxqpl6vrskk04yvqa0v4n2zw9x5r1h46q9m6qk"; depends=[gtools igraph Matrix Rcpp stringr]; }; @@ -12818,7 +12843,7 @@ in with self; { netgwas = derive2 { name="netgwas"; version="1.13"; sha256="156axkl61z0s3zm8plkcc3s46x0881mqnk94azl3p0nphblhmhcv"; depends=[glasso huge igraph MASS Matrix qtl RBGL tmvtnorm]; }; netie = derive2 { name="netie"; version="1.0"; sha256="0ja59rfg576z8rbv073aaab32qazlrqhvyvxpssibwsvbfcrhklm"; depends=[]; }; netjack = derive2 { name="netjack"; version="1.2.0"; sha256="060ygb0kxi0gx1ya38cmf5hhyy6jkwq5519azdqhq5i324cwzzm7"; depends=[brainGraph ggplot2 igraph Rdpack]; }; - netmeta = derive2 { name="netmeta"; version="2.0-0"; sha256="13fk5yj8fl9lwi871krkdgryr9jqbawvaffyhgrwbr89pjgvpzjs"; depends=[ggplot2 magic MASS meta metafor]; }; + netmeta = derive2 { name="netmeta"; version="2.0-1"; sha256="0yssxp42l2krrkb7cna7rgk80mzhl8lcmkn1r3i5ymckgnj8y9pz"; depends=[ggplot2 magic MASS meta metafor]; }; netmhc2pan = derive2 { name="netmhc2pan"; version="1.3.1"; sha256="0q98rar7iglwxmf1274wrjcr7kp544ayrjhd286x68jmf51cqyrg"; depends=[assertive devtools dplyr rappdirs readr seqinr stringr testit tibble]; }; netplot = derive2 { name="netplot"; version="0.1-1"; sha256="11s6gcxcwbnd5x3sb4ryi4ks1bsbf7ylgc0yrygv58ipisxb2780"; depends=[igraph network sna]; }; netrankr = derive2 { name="netrankr"; version="1.1.0"; sha256="0l0c843gsckd2kdk3vgvlx6mzw6g8nspijywv9h032ggdwzbag6n"; depends=[igraph Matrix Rcpp RcppArmadillo]; }; @@ -12862,7 +12887,7 @@ in with self; { nflfastR = derive2 { name="nflfastR"; version="4.3.0"; sha256="1vg27m51q01m6rypaksr5dw7qg3i638dypm31v5gimbdkjmgs2j7"; depends=[cli curl dplyr fastrmodels furrr future glue janitor lifecycle mgcv nflreadr progressr rlang stringr tibble tidyr tidyselect xgboost]; }; nflreadr = derive2 { name="nflreadr"; version="1.1.1"; sha256="0icwsyk675s5ckgwrl73v4d1y0n43fgsmaibhkmvv7b6ric9n5b0"; depends=[cachem curl data_table memoise qs rappdirs Rcpp RcppParallel rlang]; }; nflseedR = derive2 { name="nflseedR"; version="1.0.2"; sha256="061jd3mr06mxs5riwlph3a1hsk5jypws71jy9jzhhqnijdy96bki"; depends=[cli crayon curl dplyr furrr future glue gsubfn magrittr progressr purrr readr rlang tibble tidyr]; }; - ngram = derive2 { name="ngram"; version="3.0.4"; sha256="1q4y64dy7vcjikbfx20fpdiy1kwvxay4y90xr5j8d8zkqnva0way"; depends=[]; }; + ngram = derive2 { name="ngram"; version="3.2.0"; sha256="1g57md4s73qpxzqxr8sgzvbkx3y4zmw4hfq6zsysnw4h2dbqxm1l"; depends=[]; }; ngramr = derive2 { name="ngramr"; version="1.7.4"; sha256="11v7vl55bfh9fqdkggpxykglyjqdcnl53if0vki8al67qfwsh9i7"; depends=[cli dplyr ggplot2 httr lifecycle RCurl rjson rlang scales stringr textutils tibble tidyr xml2]; }; ngramrr = derive2 { name="ngramrr"; version="0.2.0"; sha256="1p8s4p3h27g647rxx9qjfad5dzbngjbmvhw4gz0jbsmfqrsf72by"; depends=[tau tm]; }; ngspatial = derive2 { name="ngspatial"; version="1.2-2"; sha256="09hdvmbna4m62zv18k5kj9718wzw7p43wnal2j6aa0m5sd2rx9rz"; depends=[batchmeans Rcpp RcppArmadillo]; }; @@ -12886,7 +12911,7 @@ in with self; { nimble = derive2 { name="nimble"; version="0.12.1"; sha256="1n37g22wj5zlvb8lgxh9gi7mk011lyrmg3kaibhcpj2858hz681m"; depends=[coda igraph R6]; }; nimbleCarbon = derive2 { name="nimbleCarbon"; version="0.1.2"; sha256="1cj1yik4knxniag12qr8hqxkqhcm5lhq8xw7g8iibv3rxq0jvkki"; depends=[coda doSNOW foreach nimble rcarbon snow]; }; nimbleEcology = derive2 { name="nimbleEcology"; version="0.4.0"; sha256="1qpwjzxgcmfqfp2ccjkngvjymqsyxvhvcs43vvynx30xgrj3nzdm"; depends=[nimble]; }; - nimbleSCR = derive2 { name="nimbleSCR"; version="0.1.2"; sha256="0212aj3d760dnb04xlwh3zsf1mkv58lmlql8zp7mm7sgx12qg8yh"; depends=[nimble]; }; + nimbleSCR = derive2 { name="nimbleSCR"; version="0.1.3"; sha256="1859qai1cyh82cxa8kccrn36flw045j4dggzixi2m3k029gvjh15"; depends=[nimble]; }; nimbleSMC = derive2 { name="nimbleSMC"; version="0.10.0"; sha256="15abjhgq8mi8c079hfzwjyl5glchx606hciq2lsirkrbyvc7b23n"; depends=[nimble]; }; nipals = derive2 { name="nipals"; version="0.8"; sha256="0nv7h68hysxnpiinmgw6v3bz4ya53c0p96k9bfvcmalfb7hs8j5z"; depends=[]; }; nipnTK = derive2 { name="nipnTK"; version="0.1.0"; sha256="0imy2x1h9d842ssw7hmmh21c4mj7s6y05mmjin1270skbnrk2zmr"; depends=[bbw withr]; }; @@ -12945,7 +12970,7 @@ in with self; { nnfor = derive2 { name="nnfor"; version="0.9.6"; sha256="0bciy6k79g7abvj3pmmdc4wzg5mp11zgmdbx17x4by993p2clhw9"; depends=[forecast glmnet MASS neuralnet plotrix tsutils uroot]; }; nngeo = derive2 { name="nngeo"; version="0.4.4"; sha256="0k189ih47n20g70y6sxff8dyjlyv09pc03ynwhm1d7pr3l8hxin4"; depends=[data_table lwgeom nabor s2 sf units]; }; nnlasso = derive2 { name="nnlasso"; version="0.3"; sha256="1n7karlmgq61z9ywfx9xb5wvmxx40ydpnzzazj1xr70qlv5m0qk4"; depends=[]; }; - nnlib2Rcpp = derive2 { name="nnlib2Rcpp"; version="0.1.7"; sha256="18lrbmxbazrwr50s0ci2zp3y8g50gwhlp1c7y0iz2vxc5f2j4m88"; depends=[Rcpp]; }; + nnlib2Rcpp = derive2 { name="nnlib2Rcpp"; version="0.1.8"; sha256="0bwf96q4hb54my57bb540a8brpiqmrk0f6mms2bv9ci1624x0k80"; depends=[Rcpp]; }; nnls = derive2 { name="nnls"; version="1.4"; sha256="07vcrrxvswrvfiha6f3ikn640yg0m2b4yd9lkmim1g0jmsmpfp8f"; depends=[]; }; nnspat = derive2 { name="nnspat"; version="0.1.0"; sha256="01c0spr3i76n1ffhpp5qigmcbsqbscv6hzrrn3kgz0v5wr7j6ss2"; depends=[MASS Rdpack]; }; nnt = derive2 { name="nnt"; version="0.1.4"; sha256="1rrqq8m3plsq13hsh53h948wbx37gl87hplj4ms2pxxf1zwqsmnj"; depends=[survival survRM2]; }; @@ -12953,7 +12978,7 @@ in with self; { noaaoceans = derive2 { name="noaaoceans"; version="0.3.0"; sha256="0pxsddzkrprzjch173shhmd7c2h6rh5xzs3n5bbs97l51ni8m60m"; depends=[httr jsonlite rvest xml2]; }; noaastormevents = derive2 { name="noaastormevents"; version="0.2.0"; sha256="1d93h8av0bbv7a56g6m000qpsnzqpfdla0fmcj5y8fbbqkipxnfr"; depends=[choroplethr choroplethrMaps data_table dplyr forcats ggplot2 hurricaneexposure lubridate magrittr maps plyr RColorBrewer RCurl rlang stringr tibble tidyr viridis XML]; }; noah = derive2 { name="noah"; version="0.1.0"; sha256="1ln23lp4c70fin9sjjhm4ngy47f8sk2mcljp5q449b7hq8gqi12c"; depends=[assertthat crayon digest dplyr hash magrittr purrr R6 rlang stringr]; }; - noctua = derive2 { name="noctua"; version="2.2.0"; sha256="0150i8rh4aw9bj6s5ysj7jg162fawi6zyq5kgj1lbnifmlk2nbz4"; depends=[data_table DBI paws uuid]; }; + noctua = derive2 { name="noctua"; version="2.3.0"; sha256="1py32s0qjya3rb6znx8vrlvc8bpqijchcc6dbyr53w8xfikiyd4i"; depends=[data_table DBI paws uuid]; }; nodbi = derive2 { name="nodbi"; version="0.4.3"; sha256="03vb11iryhx18jdj4sbmh50l9h39pkzdp9d33117pbfvr61pzx32"; depends=[data_table jsonlite]; }; node2vec = derive2 { name="node2vec"; version="0.1.0"; sha256="03gfpn4xgmdwlrpwi9pdpnh6k75mwp85j6vywkj0jsxhz3rbg95g"; depends=[data_table dplyr igraph rlist vctrs vegan word2vec]; }; nodeHarvest = derive2 { name="nodeHarvest"; version="0.7-3"; sha256="0nh3g50rk9qzrarpf29kijwkz9v60682i0ag77j2ipyvhhbpwpkc"; depends=[quadprog randomForest]; }; @@ -12965,9 +12990,9 @@ in with self; { noisyCE2 = derive2 { name="noisyCE2"; version="1.1.0"; sha256="02zkkyys9qknwm39gz4j4pvlvkd5qlvxqaprklzsd40dgz39cwq4"; depends=[magrittr]; }; noisySBM = derive2 { name="noisySBM"; version="0.1.4"; sha256="1zdkxr48kvpqs49figxxznq3d45nalja92lyal71m066s1blc6dg"; depends=[ggplot2 gtools RColorBrewer]; }; noisyr = derive2 { name="noisyr"; version="1.0.0"; sha256="05nvxz5qa4lsi62va74yq4m68nlacjkl8xj5nsq7dik3357y53dr"; depends=[doParallel dplyr foreach GenomicRanges ggplot2 IRanges magrittr philentropy preprocessCore Rsamtools tibble]; }; - nombre = derive2 { name="nombre"; version="0.3.0"; sha256="0ssi0xk3f327zs7zvyhcm20v537y6ikjnfjarjsz22dvn05dblma"; depends=[fracture pkgconfig]; }; + nombre = derive2 { name="nombre"; version="0.4.0"; sha256="0bc66vc8xxg8q2x7nh4si04qgb2gxzl61jf4k10vc6v8dsglk77k"; depends=[fracture]; }; nomclust = derive2 { name="nomclust"; version="2.5.0"; sha256="17vqxbx5bpja2fxp83w0sbgbs61b2vaak9zzvvxkicxqwk09ix2v"; depends=[cluster Rcpp]; }; - nominatimlite = derive2 { name="nominatimlite"; version="0.1.2"; sha256="1gczpbv6wx27zcgafnjcripyyix4faprak0qb90805kb7wzcjajc"; depends=[dplyr jsonlite sf tibble]; }; + nominatimlite = derive2 { name="nominatimlite"; version="0.1.4"; sha256="0kcmhfvslvffm7scv8na8z9l9jyzayy7bwgbzgjyqk21b9rcigc2"; depends=[dplyr jsonlite sf tibble]; }; nomisr = derive2 { name="nomisr"; version="0.4.4"; sha256="1qa7k4fh7n2imf91nfcdg32dacraay343jv9sczs6qc37nadhdbg"; depends=[dplyr httr jsonlite readr rlang rsdmx snakecase tibble]; }; nomnoml = derive2 { name="nomnoml"; version="0.2.3"; sha256="08zraip0v4jc51zv2zsvka6k8d1ry2ac9d70xpavfggbgmrmz987"; depends=[htmlwidgets lifecycle png rlang webshot]; }; nomogramEx = derive2 { name="nomogramEx"; version="3.0"; sha256="16235rwblnzn8k53817llwy2pzhnpifh6ij159nxymjm8ar9qpbp"; depends=[pracma rms]; }; @@ -13057,7 +13082,7 @@ in with self; { nsdr = derive2 { name="nsdr"; version="0.1.1"; sha256="1p73aj465lk52n3dikkqi54zm2f9v00ikpmry10p42qhfkgrw61l"; depends=[]; }; nse = derive2 { name="nse"; version="1.20"; sha256="037z164m78hdbwgnaa10jq50ngg3n9iigmyd1r5gz6hgvsr5sbnf"; depends=[coda mcmc mcmcse np Rcpp sandwich]; }; nse2r = derive2 { name="nse2r"; version="0.1.5"; sha256="1gwq8x3sn2f4p3yivmg2dljpdjcwsy2s6467pnwlcjdmr3sqgv2b"; depends=[httr jsonlite magrittr rvest xml2]; }; - nser = derive2 { name="nser"; version="1.3.3"; sha256="0l34z4arpwabgsc4qqxal19vqxdiwj94d3nb31milqk9jrs27kms"; depends=[dplyr googleVis jsonlite lubridate magrittr purrr readr RSelenium rvest stringr tidyverse]; }; + nser = derive2 { name="nser"; version="1.3.4"; sha256="11pkabv3m4592l480mxkw91z58c91yi0n19yq5si0hv8rxgs592v"; depends=[dplyr googleVis jsonlite lubridate magrittr purrr readr RSelenium rvest stringr tidyverse]; }; nseval = derive2 { name="nseval"; version="0.4"; sha256="18avir5zllvm2sbi9616k7dlb8yxhvnbji7xshr4kcfvy1fvn2ia"; depends=[]; }; nsga2R = derive2 { name="nsga2R"; version="1.0"; sha256="04jj0a3isfc348vg46il5x9l33cr7xawz5w0mm4pwr6djhd8nfhx"; depends=[mco]; }; nsga3 = derive2 { name="nsga3"; version="0.0.3"; sha256="1jv3kw22jw24n7lnwhq3857mygr2yfv8c5xp3lbqqgz5840cdfa1"; depends=[mlr parallelMap rPref xgboost]; }; @@ -13101,7 +13126,6 @@ in with self; { obsSens = derive2 { name="obsSens"; version="1.3"; sha256="1vfm1mzsycwkqa39vf3fcdv1s6adps9hw1rxlvl8v9kq746hcabw"; depends=[]; }; observer = derive2 { name="observer"; version="0.1.2"; sha256="1027827k57qb4xppx0xxxffd1s3n7pz754irdx3v1v3piix8xi8m"; depends=[bazar bit dplyr lazyeval magrittr tibble]; }; occ = derive2 { name="occ"; version="1.1"; sha256="1aka29qqwbd494kvi15yyyqkb9hks4ky2gcvykxhx2drm2fnsn4g"; depends=[]; }; - occCite = derive2 { name="occCite"; version="0.5.0"; sha256="09y1vqjshrh8mbw1xsmcfrcxy5ccx14gf6p5mfzlwm3ywsi84hcc"; depends=[bib2df BIEN DBI dplyr ggplot2 htmltools httr leaflet lubridate RColorBrewer rgbif rlang RPostgreSQL stringr taxize tidyr viridis waffle]; }; occupancy = derive2 { name="occupancy"; version="1.2"; sha256="0j50vg1405n1hp72xqsq1hp3gdbfx5yq9w1zdv6dzjc6vjhbx00d"; depends=[matrixStats]; }; ocd = derive2 { name="ocd"; version="1.1"; sha256="06pyc352pvn85k76z9797gwk0ksbb3snvh6krysp68k3lcygq872"; depends=[]; }; oce = derive2 { name="oce"; version="1.4-0"; sha256="0224fgd51fchn8apdi6x0n3ycl6zdbwch9janmidqr0i01418d1v"; depends=[gsw Rcpp sf testthat]; }; @@ -13183,7 +13207,8 @@ in with self; { oompaBase = derive2 { name="oompaBase"; version="3.2.9"; sha256="1cmw2s5dznmv675484jgvkzgvi6vhg0zbxsq6zhpqsisf672pjhl"; depends=[cluster]; }; oompaData = derive2 { name="oompaData"; version="3.1.1"; sha256="0by9qfxlx6fdmp12qnphlli5hdn5balvx4ckg64fw6vwa291g7b0"; depends=[]; }; ooplah = derive2 { name="ooplah"; version="0.1.0"; sha256="0hrbpidcrnvm14qdjhcz4j4im1caydxkj4k9zmqs7dq3wv10rgr9"; depends=[R6]; }; - opalr = derive2 { name="opalr"; version="3.0.1"; sha256="0vrwr749alj181hhb8n4474hdhzmpgh8q2ivx0bbllg73jx2myxg"; depends=[httr jsonlite labelled mime progress]; }; + opGMMassessment = derive2 { name="opGMMassessment"; version="0.2.0"; sha256="0mhqv8vqjnnjmn4ayykmvwkwh1k9y3xacna814c61jl14kg8jx0v"; depends=[AdaptGauss caTools cluster ClusterR DataVisualizations DistributionOptimization doParallel dplyr foreach ggplot2 mclust mixAK mixtools multimode NbClust rlang]; }; + opalr = derive2 { name="opalr"; version="3.0.2"; sha256="0nwa77l4d4zz3jxmfgm8h8k823lvcvjzbk3i6ahscrhzw2ky2phc"; depends=[httr jsonlite labelled mime progress]; }; opdisDownsampling = derive2 { name="opdisDownsampling"; version="0.7.0"; sha256="0vk99psbbks136h3md73g7w3rwlx3mgkx2lahmv536kf8v4fj2bp"; depends=[benchmarkme caTools doParallel foreach memuse pracma twosamples]; }; openCR = derive2 { name="openCR"; version="2.1.0"; sha256="1399kmvxhb4rhhdv8ishi1bwsjma1fflz5hpl9qjqpvirr1aazb2"; depends=[abind BH MASS nlme plyr Rcpp RcppParallel secr stringr]; }; openEBGM = derive2 { name="openEBGM"; version="0.8.3"; sha256="120lp7fy6abj6f8g6naq4018d0dfzz6bq3dlh0xdhd4iclb7pplv"; depends=[data_table ggplot2]; }; @@ -13194,7 +13219,7 @@ in with self; { openSkies = derive2 { name="openSkies"; version="1.1.5"; sha256="00lnd3xwryh8z2r4hl0xlr6mi57vnggrz3yqldvi9v7br8i54kjm"; depends=[cluster dbscan ggmap ggplot2 httr magick R6 ssh xml2]; }; openVA = derive2 { name="openVA"; version="1.0.13"; sha256="1hps67qlimhrjk3ymmr0jgqac8z6vilqgrchqp6z7vydqirfyp5l"; depends=[cli crayon ggplot2 InSilicoVA InterVA4 InterVA5 Tariff]; }; openadds = derive2 { name="openadds"; version="0.2.0"; sha256="1jb8zd3rpxfkjkg895iab6m4cfi53p5vy3nnpjkgq7ym6499qjcv"; depends=[crul dplyr jsonlite maptools rappdirs readr tibble xml2]; }; - openair = derive2 { name="openair"; version="2.8-4"; sha256="0gh0vs8g8l03d3yyx4h7k12km7m9yn76369ydq0iq24g5wjjw89k"; depends=[cluster dplyr hexbin lattice latticeExtra lubridate mapproj MASS mgcv purrr Rcpp readr rlang tidyr]; }; + openair = derive2 { name="openair"; version="2.8-5"; sha256="19d51pnxsy474vgzk6353ylpmdfaaw0262yp5wyad1snchbagwk9"; depends=[cluster dplyr hexbin lattice latticeExtra lubridate mapproj MASS mgcv purrr Rcpp readr rlang tidyr]; }; openblender = derive2 { name="openblender"; version="0.5.81"; sha256="01akixxj04kgrxhv04icrivfpnipnpg9j62i3y19q3jkl9846lh1"; depends=[httr jsonlite]; }; opencage = derive2 { name="opencage"; version="0.2.2"; sha256="1sjkpp6cj6ivd68p6ql6vwgdvy0fwfkjv84wgwgb4i7f4mnxgnff"; depends=[crul dplyr jsonlite lifecycle memoise progress purrr ratelimitr rlang tibble tidyr withr]; }; opencpu = derive2 { name="opencpu"; version="2.2.5"; sha256="1qlwx8iq30qfy2sh0v31pxg955bj4zs0r7v8yklbdwb3qw7kv30g"; depends=[brew curl evaluate httpuv jsonlite knitr mime openssl protolite rappdirs remotes sys webutils zip]; }; @@ -13305,7 +13330,7 @@ in with self; { oskeyring = derive2 { name="oskeyring"; version="0.1.1"; sha256="04i5nbgwwwsi0g94kyyhh29jsfn9jzjn6ihpj0ah8vj6yama152b"; depends=[]; }; osmar = derive2 { name="osmar"; version="1.1-7"; sha256="0q6d8nw7d580bnx66mjc282dx45zw9srczz90b520hjcli4w3i3r"; depends=[geosphere RCurl XML]; }; osmdata = derive2 { name="osmdata"; version="0.1.8"; sha256="0cypc9ibqhg4yghyq6l9nv3j90ajy1ri7dlsc92bhpc5b7im107n"; depends=[curl httr jsonlite lubridate magrittr Rcpp rvest sp tibble xml2]; }; - osmextract = derive2 { name="osmextract"; version="0.3.1"; sha256="0b4488nphzjv8sp2y19sn930zfsd7lxqqnpzg612m39bzz84vcbr"; depends=[sf]; }; + osmextract = derive2 { name="osmextract"; version="0.4.0"; sha256="027mwp909xa2i32ibgig6kqazwy8kqyyqyjiyaqhpajm17kfb011"; depends=[httr jsonlite sf]; }; osmgeosample = derive2 { name="osmgeosample"; version="0.1"; sha256="1vcdisf147mcdqkc35czcphjh6rhaix9vy6l5inknaarmmajri3x"; depends=[dplyr geoR mapview nngeo osmdata pdist processx qpdf Rcpp rgdal sf sp splancs tibble]; }; osmose = derive2 { name="osmose"; version="3.3.4"; sha256="144mklbish59amzz7j95qmn98yqlz3bqzd2rp03wg9f5s69bxjj6"; depends=[fields knitr mgcv ncdf4 rlist rmarkdown stringr]; }; osmplotr = derive2 { name="osmplotr"; version="0.3.3"; sha256="0p94phv7jn0q9k25300zz59ldfphm9xgy6i7n3r8xj4zay0c7mf2"; depends=[e1071 ggm ggplot2 mapproj osmdata rgeos sp spatstat spatstat_core spatstat_geom]; }; @@ -13327,7 +13352,7 @@ in with self; { outcomerate = derive2 { name="outcomerate"; version="1.0.1"; sha256="07mwml7r98qjgvrp938sqf7klyspz110583j0zwb72j69n4whmrj"; depends=[Rdpack]; }; outlierensembles = derive2 { name="outlierensembles"; version="0.1.0"; sha256="0m2iaf3rbpwvyrjz6qglbrinmz676hnbqqm6vc38zb3k3cjcllaq"; depends=[airt apcluster EstCRM psych]; }; outliers = derive2 { name="outliers"; version="0.14"; sha256="0vcqfqmmv4yblyp3s6bd25r49pxb7hjzipiic5a82924nqfqzkmn"; depends=[]; }; - outliertree = derive2 { name="outliertree"; version="1.7.6"; sha256="1634wm2diawsppb8j3sfcnnp44ik5npmcx0lrd343a9c89xb7z98"; depends=[Rcereal Rcpp]; }; + outliertree = derive2 { name="outliertree"; version="1.7.6-1"; sha256="0hb44l5rr2acpv1szfrmj4gxh1zj25gw6zjvymh2vgk4i9aa20im"; depends=[Rcereal Rcpp]; }; outreg = derive2 { name="outreg"; version="0.2.2"; sha256="04f1x7mxq4swbd7bfwjjgx4838jm6qj4piaighmhcscwrdkxa1cp"; depends=[magrittr reshape2 sandwich stringr tidyr]; }; outsider = derive2 { name="outsider"; version="0.1.1"; sha256="082yygvjs31clz8b3p59gkc26249gqp8hl1071gm6zi4vi2ng43x"; depends=[crayon curl jsonlite outsider_base remotes tibble yaml]; }; outsider_base = derive2 { name="outsider.base"; version="0.1.4"; sha256="1wlr3a14a330r9p4lahdmgs4hbgfsp05rsbzr30djwpv21bfl03a"; depends=[callr cli crayon devtools pkgload sys tibble yaml]; }; @@ -13360,7 +13385,7 @@ in with self; { pRF = derive2 { name="pRF"; version="1.2"; sha256="17srabk7mam16rdzc5g9ggdrhjjk8wibny40gxvgzkv7qgq7m80x"; depends=[dplyr ggplot2 multtest permute randomForest reshape2]; }; pROC = derive2 { name="pROC"; version="1.18.0"; sha256="1abvbzdss12n64pp9vlgnn0q3abh0nj4n0a8cinwwvhphjrm9vym"; depends=[plyr Rcpp]; }; pRSR = derive2 { name="pRSR"; version="3.1.1"; sha256="1irx95b7cwvx3gpn9brjjn4k947m8frz542r18nilc9f1159mb3s"; depends=[]; }; - pRecipe = derive2 { name="pRecipe"; version="0.1.0"; sha256="0lsycd7p2cg8p16x1426iwd1n97dpiizq2ggl7x4fl4q6gvazywr"; depends=[curl data_table dplyr gdalUtils getPass ggplot2 hdf5r lubridate ncdf4 R_utils raster rgdal sp stringr viridis zoo]; }; + pRecipe = derive2 { name="pRecipe"; version="0.1.1"; sha256="05lhviyzsrfh1f7jfp77i9xk5nnj4k3kgynw8brxmkyjnr68rayf"; depends=[curl data_table dplyr gdalUtils getPass ggplot2 hdf5r lubridate maps ncdf4 R_utils raster rgdal sp stringr viridis zoo]; }; pa = derive2 { name="pa"; version="1.2-1"; sha256="1pfgzxirkb0p8f6smjlrbp1qpsh0vsvqf306cvldaj9zx8cw0q9f"; depends=[ggplot2]; }; pacbpred = derive2 { name="pacbpred"; version="0.92.2"; sha256="13p405vh9rf1r5idxl5payc85vwlzcd87wm15163vc9gmil1ncsf"; depends=[]; }; pack = derive2 { name="pack"; version="0.1-1"; sha256="0x4p8clwp49s2y67y7in530xwhjngnqwagf9xnyb1jp0z3myd3r7"; depends=[]; }; @@ -13485,7 +13510,7 @@ in with self; { partitionComparison = derive2 { name="partitionComparison"; version="0.2.5"; sha256="0wzg2r4c61fd3cp8kwsc313gwcizh5aavw361lc9gqn57p1kml1j"; depends=[lpSolve Rdpack]; }; partitionMap = derive2 { name="partitionMap"; version="0.5"; sha256="0pi066xaaq0iqr0d7cncdzjd7bacmgrivc4qvhqx0y7q1vifrdjm"; depends=[randomForest]; }; partitionMetric = derive2 { name="partitionMetric"; version="1.1"; sha256="1wry9d3s814yp79ayab7rzf8z5l2mwpgnrc5j7d2sac24vp4pd48"; depends=[]; }; - partitions = derive2 { name="partitions"; version="1.10-2"; sha256="1bckdl6alqi6y7ri3qr2pz9zzqgs167c73bhnwbq4jk0mpxwbgg6"; depends=[gmp mathjaxr polynom sets]; }; + partitions = derive2 { name="partitions"; version="1.10-4"; sha256="1ik7cj2yfybx4v847nvnjrbkd0k66pfqqv6lkygfnlrldi0r205i"; depends=[gmp mathjaxr polynom sets]; }; partools = derive2 { name="partools"; version="1.1.6"; sha256="0w7p88y4ab4v14k16k95cyb5f3yl2g6ban11775rmi2h9xqkfxk8"; depends=[data_table pdist regtools]; }; partsm = derive2 { name="partsm"; version="1.1-3"; sha256="17md3j41knscllckiqnvkqvf2v0fgsig101vgg6z5ic1yzvzfxgs"; depends=[]; }; party = derive2 { name="party"; version="1.3-9"; sha256="12ch2q5my2r5l84zdndr3w0y50wa4r8snj2xpxg2hsb3p3yzx899"; depends=[coin modeltools mvtnorm sandwich strucchange survival zoo]; }; @@ -13527,7 +13552,7 @@ in with self; { paws = derive2 { name="paws"; version="0.1.12"; sha256="0kn1z045r106fwqcaz52hb02bhrcblh479cajfjiq480s1iljcw6"; depends=[paws_analytics paws_application_integration paws_compute paws_cost_management paws_customer_engagement paws_database paws_developer_tools paws_end_user_computing paws_machine_learning paws_management paws_networking paws_security_identity paws_storage]; }; paws_analytics = derive2 { name="paws.analytics"; version="0.1.12"; sha256="04gnaxmj21l312xkrsd9bisi0bz9h6h5fyhwlqylcxi077z1yb2g"; depends=[paws_common]; }; paws_application_integration = derive2 { name="paws.application.integration"; version="0.1.12"; sha256="0llyd9hc679pad1ih0rcc38q5xxpzinhwrl8cvrkgsjgbc3agq42"; depends=[paws_common]; }; - paws_common = derive2 { name="paws.common"; version="0.3.13"; sha256="15sj7yw4hj76minr00xhgzkg1rwb7gsr2ib9q4d053i5f3jcy54a"; depends=[base64enc digest httr jsonlite xml2]; }; + paws_common = derive2 { name="paws.common"; version="0.3.14"; sha256="013yiki3bjx0np577wy17ikfxdr2hiv6sd10anv281r108kldm1x"; depends=[base64enc digest httr jsonlite xml2]; }; paws_compute = derive2 { name="paws.compute"; version="0.1.12"; sha256="1km6fng6il5fcjlrbbndahsw2dr2ql83hwac9wlpd67zm3wy9lky"; depends=[paws_common]; }; paws_cost_management = derive2 { name="paws.cost.management"; version="0.1.12"; sha256="0in4f8ygw5g2v6vl3lz2y0v51llglh8b1ymbd04d54xxlgn83knh"; depends=[paws_common]; }; paws_customer_engagement = derive2 { name="paws.customer.engagement"; version="0.1.12"; sha256="0ac6hzn4ilfjhzdmc9x80999fl18cz16mky31qd3y09m93w2xkdj"; depends=[paws_common]; }; @@ -13547,7 +13572,7 @@ in with self; { pbdPROF = derive2 { name="pbdPROF"; version="0.4-0"; sha256="174jwrkvw5qz1430y6id01w1czlw45j1yw8a8dyw36knrmvmdz10"; depends=[]; }; pbdRPC = derive2 { name="pbdRPC"; version="0.2-1"; sha256="1pz71zfs9qw96dj3h5mrm734vbbi4drlv9hrw91dbzm3a7jsxg4q"; depends=[]; }; pbdSLAP = derive2 { name="pbdSLAP"; version="0.3-1"; sha256="1iwc5iw6q7r6p08yngczqlbqk779nsx2rmxc3fajzl6d73rprshl"; depends=[pbdMPI rlecuyer]; }; - pbdZMQ = derive2 { name="pbdZMQ"; version="0.3-5"; sha256="1v8iv1pzs4j3ics9k9h4xjkv6z1ma2xbqy003xk2lqax6srqi02d"; depends=[]; }; + pbdZMQ = derive2 { name="pbdZMQ"; version="0.3-6"; sha256="0yy3x3l04vx13jbjbvkvsc8jdbf0abndjfknszdx3bi18b2chi4r"; depends=[]; }; pbivnorm = derive2 { name="pbivnorm"; version="0.6.0"; sha256="05jzrjqxzbcf6z245hlk7sjxiszv9paadaaimvcx5y5qgi87vhq7"; depends=[]; }; pbixr = derive2 { name="pbixr"; version="0.1.4"; sha256="098fwmar56l8w5r58grirqypdmc2c4hil7bi11z18llja62fncnw"; depends=[dplyr formatR jsonlite stringr textclean xml2 zip]; }; pbkrtest = derive2 { name="pbkrtest"; version="0.5.1"; sha256="1if7msv9i7jhg1as1f7m81a95dnwhwj3yfs24bqr0f6r0ch4b8xj"; depends=[broom dplyr knitr lme4 magrittr MASS Matrix numDeriv]; }; @@ -13562,7 +13587,7 @@ in with self; { pcSteiner = derive2 { name="pcSteiner"; version="1.0.0"; sha256="14rw7xb6n46ddiyara4i0296p4c16bljrj0j7g3rlnspb95vzvwr"; depends=[igraph]; }; pca3d = derive2 { name="pca3d"; version="0.10.2"; sha256="0xpln78zdh6q7xff6pj2jaq2kafrijmlikmpnsfar2fzgkaw7jx6"; depends=[ellipse rgl]; }; pcaBootPlot = derive2 { name="pcaBootPlot"; version="0.2.0"; sha256="1320d969znk9xvm1ylhc3a31nynhzyjpbg1fsryq72nhf8jxijaa"; depends=[FactoMineR RColorBrewer]; }; - pcaL1 = derive2 { name="pcaL1"; version="1.5.4"; sha256="1myl12537bxwmyicm8v891rflq8g6bhz9j0gcjcqgf9z80y52ayc"; depends=[]; }; + pcaL1 = derive2 { name="pcaL1"; version="1.5.5"; sha256="1m7lnry6pibmsicqlny1kzv2lhv3bi92x3abwf892praskhjlgzk"; depends=[]; }; pcaPP = derive2 { name="pcaPP"; version="1.9-74"; sha256="1dlrz5plb8b89vr3j6sn9jwryyhcwflqkiilxkybbr379m1pp0sh"; depends=[mvtnorm]; }; pcadapt = derive2 { name="pcadapt"; version="4.3.3"; sha256="01wvcflfsnlsq23vq03n870fxsab3ab29k26nqlqxw82lbvx99s3"; depends=[bigutilsr data_table ggplot2 magrittr mmapcharr Rcpp rmio RSpectra]; }; pcal = derive2 { name="pcal"; version="1.0.0"; sha256="07119k5f4h9jc48bicl4q5i7bdrkha3rz22r6g44c8ilnkvjhw6j"; depends=[Rdpack]; }; @@ -13584,7 +13609,6 @@ in with self; { pcr = derive2 { name="pcr"; version="1.2.2"; sha256="1lmgm8k3s7780ivrdj0zk1ninx7b5jffir6q5p2p47h62qqjmp5d"; depends=[ggplot2]; }; pcse = derive2 { name="pcse"; version="1.9.1.1"; sha256="1rb9146vjkf36vc5v3frykmsff7kp6qp1hhmj8pak583in4rz8f8"; depends=[]; }; pcsstools = derive2 { name="pcsstools"; version="0.1.1"; sha256="1vp4lflxzzgjfh1nkkfvnb74pjmbcdgrc1hlakjd8i5rw7swvr20"; depends=[gtools Rdpack]; }; - pct = derive2 { name="pct"; version="0.9.1"; sha256="0chqvaa8cfv3s3zf940hzca90967raakxndyxcg08acysvfq6fir"; depends=[boot readr sf stplanr]; }; pcts = derive2 { name="pcts"; version="0.15"; sha256="1wl3hgj0sn9128vwcqin37jn5ww3na4g7r1isj39j6m2v76s3ndk"; depends=[BB gbutils lagged lubridate Matrix mcompanion PolynomF Rdpack sarima xts zoo]; }; pdR = derive2 { name="pdR"; version="1.7"; sha256="05rnyb9znb71ilr9kf62x30knby1rm0p4ain220wvb62vkz054d7"; depends=[boot car coefplot lmtest papeR plm sandwich]; }; pdSpecEst = derive2 { name="pdSpecEst"; version="1.2.4"; sha256="1sf2d7vh7a1qc0cq230an8pzg9qi9g640z0ql8x2pp9wfawfzn1f"; depends=[ddalpha multitaper Rcpp RcppArmadillo Rdpack]; }; @@ -13620,7 +13644,8 @@ in with self; { pedigree = derive2 { name="pedigree"; version="1.4"; sha256="1dqfvzcl6f15n4d4anjkd0h8vwsbxjg1lmlj33px8rpp3y8xzdgw"; depends=[HaploSim Matrix reshape]; }; pedigreeTools = derive2 { name="pedigreeTools"; version="0.1"; sha256="0kgbjyw9dlp4s91cyg5w0p2vn2h9pg9ixrhc5pwvkp3v1acd0xfm"; depends=[Matrix]; }; pedigreemm = derive2 { name="pedigreemm"; version="0.3-3"; sha256="1bpkba9nxbaxnivrjarf1p2p9dcz6smf9k2djawis1wq9dhylvsb"; depends=[lme4 Matrix]; }; - pedmut = derive2 { name="pedmut"; version="0.2.0"; sha256="0851r4yl5n1mf8pk3nik5kcnv12ffxc1hl1wxp6b81qz5lbfwxaf"; depends=[]; }; + pedmod = derive2 { name="pedmod"; version="0.1.0"; sha256="1gkln7z1dbyhl44r2mp5s4sk8az0yyzpwqq8sa9z6pa3zhw55gf7"; depends=[BH Rcpp RcppArmadillo testthat]; }; + pedmut = derive2 { name="pedmut"; version="0.3.0"; sha256="0w42jhgrkf5f1baz2jb94fyccm0wx94vg0g1px4p39jvpknz9d6a"; depends=[]; }; pedprobr = derive2 { name="pedprobr"; version="0.5.0"; sha256="1hl2v98rfj71ggz75p8yfjhds12g88mgp9hzckk16ykdyggrrc7v"; depends=[pedmut pedtools]; }; pedquant = derive2 { name="pedquant"; version="0.1.7"; sha256="0hy6dz00bgfncndkqhz2ikrmcn08s86cqcyjaj7cnpivlpwvph4i"; depends=[curl data_table ggplot2 gridExtra httr jsonlite plotly readr readxl rvest scales stringi TTR xml2 zoo]; }; pedsuite = derive2 { name="pedsuite"; version="1.0.4"; sha256="0cg19aln0j9grjh53yckyvzspsclqcrzm0ch2b0854bjbnrzmxz1"; depends=[dvir forrel ibdsim2 paramlink2 pedbuildr pedmut pedprobr pedtools ribd segregatr]; }; @@ -13657,14 +13682,14 @@ in with self; { performance = derive2 { name="performance"; version="0.8.0"; sha256="1xjjnhqmwfflm5yfgjhycjn0fj0manvsvkk2ppifn0373bajp5n2"; depends=[bayestestR datawizard insight]; }; performanceEstimation = derive2 { name="performanceEstimation"; version="1.1.0"; sha256="08jx2zl6xh0rp54xa70gb717wbfdzfrx9b47i3b3ly41qaf85vrc"; depends=[dplyr ggplot2 parallelMap tidyr]; }; pergola = derive2 { name="pergola"; version="1.0"; sha256="1650ipp2b455xdkznwm7bnxvimad7nbyr9i1lg2vdh64j1qfh7gl"; depends=[seriation]; }; - periscope = derive2 { name="periscope"; version="0.6.3"; sha256="0iq0pklipli54bdgl8wl0mnm7a6ik90j0gwqks237phly23njwal"; depends=[DT ggplot2 lubridate shiny shinyBS shinydashboard writexl]; }; + periscope = derive2 { name="periscope"; version="1.0.0"; sha256="0idf6bwl1n03padgzvid4bkyq00qb59bi3dg0hpvax5fvyjfm9hh"; depends=[DT fresh ggplot2 lubridate shiny shinyBS shinydashboard writexl yaml]; }; perm = derive2 { name="perm"; version="1.0-0.2"; sha256="182ac1y91yzb34zwdcmx5fdfr5z0cha0gx2bgk36gwxhgfc994kj"; depends=[]; }; permGPU = derive2 { name="permGPU"; version="0.15"; sha256="1bxydc5dw7ka45k6ban35d5xb1dw9yq9480qns8b39cc0x3acmhc"; depends=[Biobase foreach RUnit survival]; }; permGS = derive2 { name="permGS"; version="0.2.5"; sha256="0d2kp3c1fmnjjmsvc2qwh6m66yqvy2vrrxgv1fj2i4clsbavfa0y"; depends=[coin survival]; }; permPATH = derive2 { name="permPATH"; version="1.2"; sha256="074knhcn88nzisfl20ais71micnnjqbm5lqp6jfkqj176r2af7cq"; depends=[R2HTML xtable]; }; permimp = derive2 { name="permimp"; version="1.0-2"; sha256="1zq513bkallkkqghjilvgc5iw0pcglrdyc0r2sns4ck07a3q378j"; depends=[ipred party randomForest survival]; }; permubiome = derive2 { name="permubiome"; version="1.3.1"; sha256="0a4swfkmqqr8a1psc6rlnxnpm43fj42gjkikcqy8d84wrfz2wrr9"; depends=[dabestr ggplot2 gridExtra Matrix rlang]; }; - permuco = derive2 { name="permuco"; version="1.1.0"; sha256="1mp3yp4p1b382c31a3jcmq1n90zvb1lggacb3zdblpmz1yrj4v1c"; depends=[Matrix permute]; }; + permuco = derive2 { name="permuco"; version="1.1.1"; sha256="09n0q0p98bcbsp9n6hf4i6jfpnp0j0f97idz2bc8jp2qx5pcr7am"; depends=[Matrix permute Rcpp]; }; permutations = derive2 { name="permutations"; version="1.0-9"; sha256="1701jah8i9frw3cbqlri2l56lansw54l3pp9h1fy36a8ahhcllkg"; depends=[magic numbers partitions]; }; permute = derive2 { name="permute"; version="0.9-5"; sha256="0ra8p5mf2590azrkas8z2ry7mif77xqxd29n4zgyi5vll225726j"; depends=[]; }; permutes = derive2 { name="permutes"; version="2.2"; sha256="0cmpngzl76v7mjdwk9b70a60gycsx9kw7laxswdh6j9wi0jcpp2a"; depends=[plyr]; }; @@ -13807,6 +13832,7 @@ in with self; { pivottabler = derive2 { name="pivottabler"; version="1.5.3"; sha256="0j19y4pq0y6li21fwf1sdbzy16gddjlllj9laaslsxp76zc1sjnl"; depends=[data_table dplyr htmltools htmlwidgets R6]; }; piwikproR = derive2 { name="piwikproR"; version="0.3.1"; sha256="110lyvl7dspqki5yv95j6jvxswyfd962iidsh1hraqvhs4k44s9q"; depends=[digest dplyr fs httr lubridate magrittr purrr readr rjson rlang stringr tibble]; }; pixarfilms = derive2 { name="pixarfilms"; version="0.2.1"; sha256="1qycg7ar9l3myj14xvidxrm9svdf5xmw7ss0m33q266nzwssiqpk"; depends=[tibble]; }; + pixelclasser = derive2 { name="pixelclasser"; version="1.0.0"; sha256="155igzq6wsy5nvx5vxkykh9z8q1winb6sl9z473d5jqj78yq3icx"; depends=[jpeg tiff]; }; pixelpuzzle = derive2 { name="pixelpuzzle"; version="1.0.0"; sha256="1bgy9anhgmjfy97816g2ns5pg5vsm7dwdn5l01m2zma6qnq01knm"; depends=[beepr cli stringr]; }; pixels = derive2 { name="pixels"; version="0.1.1"; sha256="1vvahrajm8ys5vgfc0iyzj2a6vzvgaakkj6i0m2sy40l2w44dn0q"; depends=[htmlwidgets miniUI shiny]; }; pixiedust = derive2 { name="pixiedust"; version="0.9.1"; sha256="1jy3xr4wpfs8j3giyia1kwrb5nlmqjbjwvj9qpax6izmcdk4srz2"; depends=[broom checkmate htmltools knitr labelVector magrittr reshape2 scales]; }; @@ -13868,6 +13894,7 @@ in with self; { plot3logit = derive2 { name="plot3logit"; version="3.1.0"; sha256="0iwhaly6lzpfaanyy1qayl6faihw5rkcnh21czdr1g0f9rjimyrb"; depends=[dplyr ellipse forcats generics ggplot2 ggtern lifecycle magrittr purrr Rdpack stringr Ternary tibble tidyr tidyselect]; }; plotDK = derive2 { name="plotDK"; version="0.1.0"; sha256="0lyhhc8yjxj3jhw72pn7i565z64mifi5iyc375yavs7axlcsl2nr"; depends=[dplyr ggplot2 mapproj plotly purrr rlang]; }; plotGMM = derive2 { name="plotGMM"; version="0.2.2"; sha256="1cgjajw3dprdlq9ri0gllbxcy33x311mbp9xdds8fgq6cs42ggyb"; depends=[amerika ggplot2 wesanderson]; }; + plotKML = derive2 { name="plotKML"; version="0.8-2"; sha256="1hdyvff76k40lrzw4vq8azdpxzxxabgkgxixkqvnw5cda362nyfh"; depends=[aqp classInt colorRamps colorspace dismo gstat landmap pixmap plyr raster RColorBrewer rgdal scales sf sp spacetime stars stringr XML zoo]; }; plotMCMC = derive2 { name="plotMCMC"; version="2.0.1"; sha256="0vxw6kbs1xvzi3sklxac9q1j4cbr8alr9c8fwifwyvpzpdk48ihf"; depends=[coda gplots lattice]; }; plotMElm = derive2 { name="plotMElm"; version="0.1.5"; sha256="0wwqzrpkmq9gzazdzlk62qig6vz43niada6fxh1wcsjqjwkcccgp"; depends=[ggplot2 interactionTest]; }; plotROC = derive2 { name="plotROC"; version="2.2.1"; sha256="0bk8j2lp80zcz4kkig1y5a1ig8vbjh7b4inzc46bn07ns1rdjgzg"; depends=[ggplot2 gridSVG plyr rlang shiny]; }; @@ -13933,13 +13960,12 @@ in with self; { poLCA = derive2 { name="poLCA"; version="1.4.1"; sha256="0bknnndcxsnlq6z9k1vbhqiib1mlzlx4badz85kc7a3xbrdrfs9f"; depends=[MASS scatterplot3d]; }; pocketapi = derive2 { name="pocketapi"; version="0.1"; sha256="0n4fyx4ldm14zy3pz7gygwhahi3p25misvxlmy8l9kqqr51fg26a"; depends=[dplyr glue httr jsonlite magrittr purrr tibble usethis]; }; pocrm = derive2 { name="pocrm"; version="0.13"; sha256="0d4iggxjbl95fz872q9v1wr30nga39sdd5dvwa2zrrm73ak81cz3"; depends=[dfcrm nnet]; }; - podr = derive2 { name="podr"; version="0.0.5"; sha256="135nq0dw1x6ngf6mxy3yds3xsxhaf5rnv1cmhavlrklhdfygc0a4"; depends=[assertthat DBI dplyr lubridate magrittr odbc plogr RPostgres rstudioapi shiny stringr tibble]; }; poems = derive2 { name="poems"; version="1.0.1"; sha256="15987nz7gx94lrkyizg0jdzkjnib5hykla7xrkg5fi0i6cch40bl"; depends=[abc doParallel foreach gdistance geosphere lhs metRology R6 raster trend]; }; pogit = derive2 { name="pogit"; version="1.2.0"; sha256="1kap1cpfp0k2vm7w4kjfja37n9z3j7ppiwvsdxl6bgpkf7kcnkp2"; depends=[ggplot2 logistf plyr]; }; poibin = derive2 { name="poibin"; version="1.5"; sha256="1sxryvwwz6ldsnkzdy56p8c895s5yvpcai9ndyjv1x5q3l05wf9v"; depends=[]; }; poilog = derive2 { name="poilog"; version="0.4"; sha256="0bg03rd5rn4rbdpiv87i8lamhs5m7n7cj8qf48wpnirg6jpdxggs"; depends=[]; }; pointRes = derive2 { name="pointRes"; version="2.0.0"; sha256="17rrdcpvd8v95g5vmbyq5gjpcc3rfbq3m6ajzc56fcizcqd4xx52"; depends=[DescTools dplR ggplot2 plyr TripleR]; }; - pointblank = derive2 { name="pointblank"; version="0.8.0"; sha256="1fzi0jp6ldpq91jjnnv15d45bkq8qklpkka2jay3x6q1nv32clgf"; depends=[base64enc blastula cli DBI dbplyr digest dplyr fs glue gt htmltools knitr magrittr rlang scales testthat tibble tidyr tidyselect yaml]; }; + pointblank = derive2 { name="pointblank"; version="0.9.0"; sha256="15f2v6dvbz34vwy1gdc32p511k1klrcjwyvrfk614niz8fygd256"; depends=[base64enc blastula cli DBI dbplyr digest dplyr fs glue gt htmltools knitr magrittr rlang scales testthat tibble tidyr tidyselect yaml]; }; pointdensityP = derive2 { name="pointdensityP"; version="0.3.5"; sha256="0n7p3b77m47avbr7n85knf31m9rlp43mdl3748ysj6wvxvhnivx4"; depends=[data_table]; }; pointr = derive2 { name="pointr"; version="0.2.0"; sha256="1qfxcyzi2sa49x00hidz054njj9mm7gkhv99faafb9x4gp3pcq0v"; depends=[stringr]; }; poio = derive2 { name="poio"; version="0.0-4"; sha256="12d47hn9rsx2n0fl107dpswfklnh8nkm0kspcxf7yfljayvxr474"; depends=[assertive_base assertive_files assertive_properties assertive_sets assertive_strings assertive_types devtools digest dplyr magrittr purrr R6 stringi tibble whoami]; }; @@ -13997,6 +14023,7 @@ in with self; { poolr = derive2 { name="poolr"; version="1.0-0"; sha256="1319q7047pm0giqqkiz1wswpvixwirz1bcn27chvzirp3n4pgxdx"; depends=[mathjaxr]; }; poorman = derive2 { name="poorman"; version="0.2.5"; sha256="05h7rjgri0b5a1jd0388p7lqvvg0y8z6g42f9bxc80jg1z730axr"; depends=[]; }; pop = derive2 { name="pop"; version="0.1"; sha256="0hbxdrkasb69x7ipddvyrzl5vvc7dd6rzj1vy7v3chg3rzgq89cj"; depends=[igraph MASS]; }; + popEpi = derive2 { name="popEpi"; version="0.4.9"; sha256="1a79n3rry85qa52cn7zbhwbsyjgw7b72l97pw3p9sf2lgvacvxr1"; depends=[data_table Epi survival]; }; popKorn = derive2 { name="popKorn"; version="0.3-0"; sha256="1zcl6ms7ghbcjyjgfg35h37ma8nspg15rk2ik82yalqlzxjf7kxw"; depends=[boot]; }; popPCR = derive2 { name="popPCR"; version="0.1.1.1"; sha256="03ppgjmdp3rivlgqs7aq082j4rzndf9fw5aq8mzci7fvjkj7whc4"; depends=[mvtnorm]; }; popRF = derive2 { name="popRF"; version="1.0.0"; sha256="0w3w1ffyy5b8glviib7ryjqzhmfp5aw6am3z8qpvis6l745p7vgh"; depends=[doParallel foreach gdalUtils plyr quantregForest randomForest raster]; }; @@ -14008,7 +14035,7 @@ in with self; { poppr = derive2 { name="poppr"; version="2.9.3"; sha256="0f8gw14vz4p6jvxa8w3fp84pm1k980mk5sfbj82qmmj236rfvyx9"; depends=[ade4 adegenet ape boot dplyr ggplot2 igraph magrittr pegas polysat progressr rlang shiny vegan]; }; popsom = derive2 { name="popsom"; version="5.2"; sha256="0zy50bssxpnlpvf72iiab7yfnfs2b4avd38pjilyi197dgcy2pj5"; depends=[fields ggplot2 hash]; }; poptrend = derive2 { name="poptrend"; version="0.1.0"; sha256="0hypxpb18azg6q1mqrphbx3x262h9ybwhlkb8fyd6vr7jjb5wn3h"; depends=[mgcv]; }; - populR = derive2 { name="populR"; version="0.1.1"; sha256="0hw7j08css008f0c1lz7xhv47sbxj096qw4md7x46yahpgfsa0c6"; depends=[sf]; }; + populR = derive2 { name="populR"; version="0.1.2"; sha256="0n7czp5s7yxdwsbsm4xai0mnlyx5cac4f9w2imhyczh1843wwnf0"; depends=[rlang sf]; }; populationPDXdesign = derive2 { name="populationPDXdesign"; version="1.0.3"; sha256="0p73ddv3j1s1vs4j3axnsf39n626qjv0w1qlq9p7km4s6729bhgv"; depends=[devtools ggplot2 plyr roxygen2 shiny shinycssloaders]; }; porridge = derive2 { name="porridge"; version="0.2.1"; sha256="03ay6nwq0x3vvpicb50zk2l14hfa6hi51j6cc559p6gzcwf70pj1"; depends=[MASS mvtnorm Rcpp RcppArmadillo]; }; portalr = derive2 { name="portalr"; version="0.3.8"; sha256="1fb3kvpky47bxmf6q91j98pncym0siki7lh7x96l1lqyhg2si5s4"; depends=[clipr clisymbols crayon dplyr forecast gh httr lubridate lunar magrittr rlang tidyr tidyselect zoo]; }; @@ -14123,7 +14150,7 @@ in with self; { prevR = derive2 { name="prevR"; version="3.4.1"; sha256="02qfyc5j7rgvwl7a5pr1l41jmgjxxsrc674xfm08hcydwda5clq1"; depends=[directlabels fields foreign GenKern ggplot2 gstat maptools rgdal sp]; }; prevalence = derive2 { name="prevalence"; version="0.4.0"; sha256="0vnmglxj1p66sgkw4ffc4wgn0w4s281fk2yifx5cn4svwijv30q0"; depends=[coda rjags]; }; prevederer = derive2 { name="prevederer"; version="0.0.1"; sha256="0vkx9nrlgp36xbl95lrb5sb5yivxlcw4yvbs8hgbm31kh0vbz32f"; depends=[httr]; }; - previsionio = derive2 { name="previsionio"; version="11.3.0"; sha256="07faylaf1r1kfxsdn3229bz31mjmkmagvw126p24iykwd7cpd3sg"; depends=[data_table futile_logger httr jsonlite magrittr Metrics plotly XML]; }; + previsionio = derive2 { name="previsionio"; version="11.3.1"; sha256="13ypvlw2lz41v85rp7nqsv43n27far7jllf5ni4kvmpxw0xwi52c"; depends=[data_table futile_logger httr jsonlite magrittr Metrics plotly XML]; }; prevtoinc = derive2 { name="prevtoinc"; version="0.12.0"; sha256="0ypdxcx9gh87a7ih3cw3yai47rzv41qwh4kpk6007ai8jkjv4n9w"; depends=[dplyr purrr rlang tibble]; }; prewas = derive2 { name="prewas"; version="1.1.1"; sha256="16dpwpks0sqfq7pdhbpipb8hnm2viic2dnz1g7v86ar51z8db4xk"; depends=[ape future future_apply phangorn vcfR]; }; priceR = derive2 { name="priceR"; version="0.1.6"; sha256="1c2yxjrd9v5i76hc5dn0hc6k2shy9cs32mvhr579w7n990ksjw23"; depends=[curl dplyr gsubfn jsonlite lubridate purrr stringi stringr]; }; @@ -14139,6 +14166,7 @@ in with self; { prinsimp = derive2 { name="prinsimp"; version="0.8-8"; sha256="074a27ml0x0m23hlznv6qz6wvfqkv08qxh3v1sbkl9nxrc7ak4vn"; depends=[]; }; printr = derive2 { name="printr"; version="0.2"; sha256="0lf538m7skrd7cmy0n118y5s0qk48q0xgqvqag20j34if1h44r4a"; depends=[knitr]; }; prioGene = derive2 { name="prioGene"; version="1.0.1"; sha256="0k1rlvmfhj1m2zp5zaac8wcwjypd6f4dd8fxxsyrzsafp9aw189l"; depends=[AnnotationDbi org_Hs_eg_db]; }; + prioritizr = derive2 { name="prioritizr"; version="7.1.1"; sha256="1d2nsbixfn6nk6icb78kiddpgpn7z2gvinmd19laqdj7a3lbknax"; depends=[ape assertthat BH data_table doParallel exactextractr fasterize igraph magrittr Matrix plyr proto raster Rcpp RcppArmadillo rgeos sf slam sp tibble uuid withr]; }; prioritizrdata = derive2 { name="prioritizrdata"; version="0.2.4"; sha256="0027nbkvp8b2w4cciabiqjdyxhjwh47k7dc36p79mkqfarh04rgv"; depends=[raster sp]; }; prioritylasso = derive2 { name="prioritylasso"; version="0.2.5"; sha256="1myci7akab1fg7p72q1hrchkixs7q5lagdsfpmdbvd13yy4q3h5z"; depends=[glmnet survival]; }; prism = derive2 { name="prism"; version="0.2.0"; sha256="0gl6qmpgfdxn90aw10z4xj4ijcwj9mr0s9ahm28niinr9y89gzxk"; depends=[dplyr ggplot2 httr lubridate magrittr purrr raster readr stringr]; }; @@ -14175,7 +14203,7 @@ in with self; { profileModel = derive2 { name="profileModel"; version="0.6.1"; sha256="01m5nb8cmq0aq555pxk2a99182si65hhmn68yn9nal2j3zl2bp4i"; depends=[]; }; profileR = derive2 { name="profileR"; version="0.3-5"; sha256="0fgc7585a7194c67irafjnx8g2j6mn3qhcfn76c6dh28clp20qp9"; depends=[ggplot2 lavaan RColorBrewer reshape]; }; profmem = derive2 { name="profmem"; version="0.6.0"; sha256="0gg6ja0ifwn9jj42rw1gnyil55sl9r2y5rjb6yjcvqwd5arajp3l"; depends=[]; }; - profoc = derive2 { name="profoc"; version="0.8.4"; sha256="1i06gv1gp64905bhmsar57a6p4cfp3sznynbavxk0hfc4xx933r4"; depends=[Matrix Rcpp RcppArmadillo RcppProgress splines2]; }; + profoc = derive2 { name="profoc"; version="0.8.5"; sha256="0i41qdgwj9ajgp7a6gl558cbf30hjk12278inbr60jhhd92gaa69"; depends=[Matrix Rcpp RcppArmadillo RcppProgress splines2]; }; profr = derive2 { name="profr"; version="0.3.3"; sha256="00bv1q0qn46nz4zjfs0l2yfh3hk71rajlp2rrlwg442z11k79ap9"; depends=[plyr stringr]; }; proftools = derive2 { name="proftools"; version="0.99-3"; sha256="095pxyyv6k818qwcjygbz1h24k0xkqi1agns8cqh2m5g64aynd70"; depends=[]; }; profvis = derive2 { name="profvis"; version="0.3.7"; sha256="1f86m426pcf90l29hf4hkirzf8f38dihk52bxbdq2gvrrdili5s3"; depends=[htmlwidgets stringr]; }; @@ -14227,7 +14255,7 @@ in with self; { provenance = derive2 { name="provenance"; version="3.3"; sha256="0kdpv1gjvgv9nxfsarm1z042xas9d4n2smhrqccs450a2mhb5fxr"; depends=[IsoplotR MASS]; }; proxirr = derive2 { name="proxirr"; version="0.1"; sha256="1lb32fdfswdrczylhfz5f0aawg7rkxzzsav37m551makn6a26k49"; depends=[]; }; proxy = derive2 { name="proxy"; version="0.4-26"; sha256="0k8sr24mjfvxp12sf1j9228ah3ngy15nqmm0jw14x5s32f1assv7"; depends=[]; }; - proxyC = derive2 { name="proxyC"; version="0.2.1"; sha256="1j8zsxdnpi8bywd7hhm47icgl1jhfyd8myj78bqgk7warai6m3iq"; depends=[Matrix Rcpp RcppArmadillo RcppParallel]; }; + proxyC = derive2 { name="proxyC"; version="0.2.2"; sha256="107z7di0xkil58pf051abp8v729rg4gk47bp9a1h5z1xwp132fnh"; depends=[Matrix Rcpp RcppArmadillo RcppParallel]; }; prozor = derive2 { name="prozor"; version="0.2.11"; sha256="1a2k69fvgi6vxgczk81kh8r2jxc6nirc51w6ac239rqjzb1zyhjm"; depends=[AhoCorasickTrie doParallel dplyr foreach Matrix plyr readr seqinr stringr]; }; prrd = derive2 { name="prrd"; version="0.0.5"; sha256="0ig3k1l2md6hzb5asv277ylg0k9a1rkcrbs8d8h4f07pxykhmivf"; depends=[config crayon data_table DBI liteq RSQLite]; }; prt = derive2 { name="prt"; version="0.1.4"; sha256="0adbznxacdfqd9hvp5x45vckh6vxlz2fvhqdqikmfy99k9gzcd4c"; depends=[assertthat backports cli crayon data_table fansi fst pillar rlang tibble vctrs]; }; @@ -14271,7 +14299,7 @@ in with self; { psycho = derive2 { name="psycho"; version="0.6.1"; sha256="1a3qccr9jwrbwkfbrvckkhhk9qygrc5n4mq80kpzx0zy5bylxi0a"; depends=[bayestestR dplyr effectsize ggplot2 insight parameters scales stringr]; }; psychometric = derive2 { name="psychometric"; version="2.2"; sha256="1b7cx6icixh8k3bv60fqxjjks23qn09vlcimqfv2x3m3nkf8p1s9"; depends=[multilevel nlme]; }; psychomix = derive2 { name="psychomix"; version="1.1-8"; sha256="0lfhfcmrk65gkr1yp317b515vmadbcf0vjcnc76d07yp6yfkz5qw"; depends=[flexmix Formula lattice modeltools psychotools]; }; - psychonetrics = derive2 { name="psychonetrics"; version="0.9"; sha256="1z6k6j5r08swgqbc9132c4pp42aqyrmvl8185bw94zhyivpgkrar"; depends=[abind combinat corpcor dplyr GA glasso IsingSampler lavaan magrittr Matrix mgcv numDeriv optimx pbapply pbv psych qgraph Rcpp RcppArmadillo roptim tidyr VCA]; }; + psychonetrics = derive2 { name="psychonetrics"; version="0.10"; sha256="09jv7ladas5yfj51nv323z2hgyamd6q40vi07wfypimpi3h4szyh"; depends=[abind combinat corpcor dplyr GA glasso IsingSampler lavaan magrittr Matrix mgcv numDeriv optimx pbapply pbv psych qgraph Rcpp RcppArmadillo rlang roptim tidyr VCA]; }; psychotools = derive2 { name="psychotools"; version="0.7-0"; sha256="11gybrf9d90nbqfm76qr2z9y4bn498j1csg5zir38k5inpw5bk3x"; depends=[]; }; psychotree = derive2 { name="psychotree"; version="0.15-4"; sha256="0ni8ajl0hzl4spm71c0myhv16an00j0brb4gyzg2fgkqs6rm34l2"; depends=[Formula partykit psychotools]; }; psychrolib = derive2 { name="psychrolib"; version="2.5.2"; sha256="0d43zhpl5ik90hqpdy62x7rwmxag3z1mdrn3cl1whr04rmymhk20"; depends=[Rcpp]; }; @@ -14392,7 +14420,7 @@ in with self; { qqvases = derive2 { name="qqvases"; version="1.0.0"; sha256="1fli4v1slmnwcmzmmfw84sa4mx3xzv3im1q0plb8811sbsgmwdvl"; depends=[shiny shinythemes]; }; qrLMM = derive2 { name="qrLMM"; version="2.1"; sha256="1viyllsd08dwgd5z930ml1nrcc9saaa18i5sx0bska8b0s7qh414"; depends=[ald lqr mvtnorm psych quantreg]; }; qrNLMM = derive2 { name="qrNLMM"; version="3.1"; sha256="15gr3wg8d4kh5fl006p4ddfsxzx7wypniwk5h2dai5c3ag7ki59c"; depends=[ald lqr mvtnorm progress psych quantreg]; }; - qra = derive2 { name="qra"; version="0.2.6"; sha256="004zski4a3p7fc804zlhf79piaw5k9cb0fz9qqhnl654ygqgkx6p"; depends=[ggplot2 knitr lattice latticeExtra lme4 rmarkdown]; }; + qra = derive2 { name="qra"; version="0.2.7"; sha256="0wx0lz8a7qc1fdpvgyfhpbryy7wk7yi90ii2yirh57dvpyfq54m0"; depends=[ggplot2 knitr lattice latticeExtra lme4 rmarkdown]; }; qrage = derive2 { name="qrage"; version="1.0"; sha256="00j74bnkcpp0h8v44jwzj67q9aaw47ajc2fvgr6dckj9rymydinl"; depends=[htmlwidgets]; }; qrandom = derive2 { name="qrandom"; version="1.2.4"; sha256="0a75pz9bhy6bqxlz02bgkgi83hrq06p9ah7qf8n0pdc2rh3sy1cx"; depends=[curl jsonlite Rmpfr]; }; qrcm = derive2 { name="qrcm"; version="3.0"; sha256="0y1na936vk5qsir5plzjrbv39jpnq01qplza32z31x6y28is2fz9"; depends=[pch survival]; }; @@ -14457,7 +14485,7 @@ in with self; { quantreg = derive2 { name="quantreg"; version="5.86"; sha256="01fnp6ndh7npxj76xlynndacsgmcfr9kgh2waw0clx3mmwlwilbi"; depends=[conquer Matrix MatrixModels SparseM]; }; quantreg_nonpar = derive2 { name="quantreg.nonpar"; version="1.0"; sha256="1f9120awnkwsgdiqg98lg7xs5l4y80930869x6k9q76595r5m92k"; depends=[fda mnormt quantreg Rearrangement]; }; quantregForest = derive2 { name="quantregForest"; version="1.3-7"; sha256="0lk7r02i6zpx9sdl2rp0r7fc3a84s8qhg49nh2x7k3vxwa095pjz"; depends=[randomForest RColorBrewer]; }; - quantregGrowth = derive2 { name="quantregGrowth"; version="1.3-0"; sha256="0wba52277fxg0d8m5d6c2cajak7nzrrrx49asj4rwijns8i9kc3c"; depends=[quantreg]; }; + quantregGrowth = derive2 { name="quantregGrowth"; version="1.3-1"; sha256="00avyjpbwh3y3pmncppkwl4545s2m1x77nllpih7sry4wds7rkj7"; depends=[quantreg]; }; quantregRanger = derive2 { name="quantregRanger"; version="1.0"; sha256="1a9q2prr790bpw6s0y5ni5ppd3vqkjr0v4nqp6ywcj5n3sk69pvx"; depends=[ranger Rcpp]; }; quantspec = derive2 { name="quantspec"; version="1.2-3"; sha256="0ifwq2jmvxhpijz9yd9hffkff6ixcliaqkp9ispp9k1b8icwi8zn"; depends=[abind quantreg Rcpp snowfall zoo]; }; quarks = derive2 { name="quarks"; version="1.0.9"; sha256="02yjmbv0lm940g74d4q6xhmv158ghis9n9s84g09j3q8wzkgmsld"; depends=[rugarch]; }; @@ -14480,7 +14508,7 @@ in with self; { quickregression = derive2 { name="quickregression"; version="0.2"; sha256="1z0sspi8q7dvgxqbj5na56v458pv6jhxrssnm6j23156dchgw39h"; depends=[car]; }; quiddich = derive2 { name="quiddich"; version="1.0.0"; sha256="10kiyn1all58klyygmz6zw0w9nfl9vq19qybmkqh410rd5ryjz3p"; depends=[ape]; }; quietR = derive2 { name="quietR"; version="0.1.0"; sha256="1f923dllhchgf49bp2d9186v3cxzdya6i56ww6cj0n0mh8gfi27z"; depends=[]; }; - quincunx = derive2 { name="quincunx"; version="0.1.1"; sha256="1qlf5w5c8bbg0fb0jicmkqyvq58znmc2g9xamgy8pb1m6pl3cdhj"; depends=[concatenate dplyr glue httr lubridate magrittr memoise progress purrr rlang rvest stringr tibble tidyjson tidyr vroom writexl]; }; + quincunx = derive2 { name="quincunx"; version="0.1.4"; sha256="1gpkhg1mvk66d2srbmacxpmpp30bvz048n2b1v61gz1f99lqmx29"; depends=[concatenate dplyr glue httr lubridate magrittr memoise progress purrr rlang rvest stringr tibble tidyjson tidyr vroom writexl]; }; quint = derive2 { name="quint"; version="2.1.0"; sha256="0rivacjccr3gdw5w4mzdjyrhw4lpww9665pwyrm845w165h9bi53"; depends=[Formula partykit rpart]; }; quokar = derive2 { name="quokar"; version="0.1.0"; sha256="1qnl3x1aa665xpyb3ac07xrnnjdwbmj645p103144k5is5b8likc"; depends=[ald ALDqr bayesQR dplyr ggplot2 GIGrvg gridExtra knitr magrittr MCMCpack purrr quantreg robustbase tidyr]; }; quotedargs = derive2 { name="quotedargs"; version="0.1.3"; sha256="11cswg9bmddsl1axxcdz11flq46p1zkpv022526f2vgl4qsprwbm"; depends=[]; }; @@ -14512,7 +14540,7 @@ in with self; { r4lineups = derive2 { name="r4lineups"; version="0.1.1"; sha256="1p0dnrp21zx1l9lqx01jnq54d5ppb8siibv47i4gsp7c7db9ymxc"; depends=[boot dplyr ggplot2 ggrepel here magick magrittr pROC psych purrr]; }; r4ss = derive2 { name="r4ss"; version="1.36.1"; sha256="03xin7avdbg5ayrcdbw5rx9sh6ingjq2kv3405h01vqf1jhkfsxk"; depends=[coda corpcor gdata gplots gtools kableExtra pso truncnorm]; }; r511 = derive2 { name="r511"; version="0.1.1"; sha256="1njsnjf0746cv6x7fznq4cg556fczqcfawwb869r3w9zv0zj1iy9"; depends=[assertthat dplyr httr tibble xml2]; }; - r5r = derive2 { name="r5r"; version="0.5.0"; sha256="1d5gm0jhhhfl8dl9pw0zmxpj7yagjc1yp2k7702mri8yz76c69xv"; depends=[checkmate curl data_table httr jdx raster rJava sf sfheaders]; }; + r5r = derive2 { name="r5r"; version="0.6.0"; sha256="0wzkv7m44vrc9zrffvjxlqnf97cjc40kzjfm6w24xz7ic54glc4z"; depends=[checkmate curl data_table httr raster rJava sf sfheaders]; }; r6extended = derive2 { name="r6extended"; version="0.1.2"; sha256="1kq1j5rx57053mslj8jx1s0wjvhis7x3y264zw44q4k2x48q9wxs"; depends=[digest hellno magrittr R6]; }; r6methods = derive2 { name="r6methods"; version="0.1.0"; sha256="18q1qd7hkxbk0yilqdk17cp7qbl4c71jv10z732539wcmy8svb1v"; depends=[dplyr glue magrittr miniUI purrr rstudioapi shiny stringr]; }; rADA = derive2 { name="rADA"; version="1.1.9"; sha256="0p47nqm8mki03pq5gzc2r5vx4vixs6hpf7am1fvadgi2bn2jrcl2"; depends=[car dplyr e1071 forestplot ggplot2 gridExtra Hmisc knitr lme4 lmerTest matrixStats openxlsx reshape2 stringr tidyr]; }; @@ -14534,14 +14562,14 @@ in with self; { rCRM = derive2 { name="rCRM"; version="0.1.1"; sha256="03p2v1wb7hsvfhdcgawaz8vd2i8kh30dj8mjydlaywxyks6i5caz"; depends=[Rcpp RcppEigen]; }; rChoiceDialogs = derive2 { name="rChoiceDialogs"; version="1.0.6"; sha256="0lp8amdalirpsba44aa3r31xnhmi36qb9qf8f8gdxxbarpgprsbi"; depends=[rJava]; }; rClinicalCodes = derive2 { name="rClinicalCodes"; version="1.0.1"; sha256="1p4p8r2n0k8h9xdzbngb95rshjp3376f5lsx228biqmswhpkhvlf"; depends=[RCurl rjson stringr tm XML]; }; - rD3plot = derive2 { name="rD3plot"; version="1.0.22"; sha256="0s0968jvsicfaw4ankhbd2ylnk2k2ghfxmf2y30aqvjqz2czfzp6"; depends=[igraph]; }; + rD3plot = derive2 { name="rD3plot"; version="1.0.25"; sha256="1ilkd3ixkqpdi7hy6sdss53s40w640n7c7v7nb8khqlpfghkrpch"; depends=[igraph]; }; rDEA = derive2 { name="rDEA"; version="1.2-6"; sha256="0045crn7azsy3ggzr28vw5jd4f5aw5nj16cjnjxy2md3skfbc3zw"; depends=[maxLik slam truncnorm truncreg]; }; rDNAse = derive2 { name="rDNAse"; version="1.1-1"; sha256="0cl51q61kwvdsm5f49cjjbzggqam1fnr6gp15cmy6m2yahyxg1lk"; depends=[]; }; rDecode = derive2 { name="rDecode"; version="0.1.0"; sha256="1d0rrhycw9anhvx6czz7axkzhzqprdgi9sqfglmc962zf1x3hmn2"; depends=[]; }; rDotNet = derive2 { name="rDotNet"; version="0.9.1"; sha256="18cd5373pdfi1x958llb4cgjqdi1fb7h7m5nkdwcd4xw9hxhinzd"; depends=[Rcpp testthat]; }; rDppDiversity = derive2 { name="rDppDiversity"; version="0.0.2"; sha256="0833v5wkamqipfxpsdxz040q6vlgg9qqpwiaivvh8ar5sci10v88"; depends=[Rcpp]; }; rEDM = derive2 { name="rEDM"; version="1.9.3"; sha256="03919425xd1dl2fwybq4rpbv5lcqm4qfk23mxszm3jgdhxb2i1s6"; depends=[Rcpp RcppThread]; }; - rEMM = derive2 { name="rEMM"; version="1.0-11"; sha256="0ynjn10gcmxs8qnh6idb34ppmki91l8sl720x70xkzcqpahy0nic"; depends=[cluster clusterGeneration igraph MASS proxy]; }; + rEMM = derive2 { name="rEMM"; version="1.1.0"; sha256="18bpskhrafj0b5rnzisrsk5x5gifqn7dpawcsgdrg7rbnz7y1wzr"; depends=[cluster clusterGeneration igraph MASS proxy]; }; rENA = derive2 { name="rENA"; version="0.2.3"; sha256="067xpw1mgb2y15ld4qc6mnf4b9k7nw8am9qz4ms980wyfp4ffjmj"; depends=[concatenate data_table doParallel foreach magrittr plotly R6 Rcpp RcppArmadillo scales]; }; rFDSN = derive2 { name="rFDSN"; version="0.0.0"; sha256="1ffiqpdzy4ipy2aci22zkih4373ifkjkpvsrza8awhyf9fwqwdsl"; depends=[XML]; }; rFIA = derive2 { name="rFIA"; version="0.3.2"; sha256="0q1256frfd485bs3zay99ndlvz0x26286hy5vys364jdfjv25zda"; depends=[bit64 data_table dplyr dtplyr ggplot2 lifecycle rlang sf stringr tidyr tidyselect]; }; @@ -14595,6 +14623,7 @@ in with self; { rSPARCS = derive2 { name="rSPARCS"; version="0.1.0"; sha256="0k46nhkdn68c7h7bbbdfwl02bldi1m3m62zbp20kh8np9bxy1rnk"; depends=[data_table geosphere plyr raster sp spatialEco tigris]; }; rSPDE = derive2 { name="rSPDE"; version="0.6.3"; sha256="07dgdiygj39c1ykd910pb6dhnivbmi14b5g70pwpxjab7l9dzaw4"; depends=[Matrix]; }; rSQM = derive2 { name="rSQM"; version="1.3.14"; sha256="0m69n2pnfv2085dln6p149a5gw0gif9xk00xmad5s9j68hwjdmym"; depends=[dplyr EcoHydRology ggplot2 gsubfn mise ncdf4 qmap reshape2 stringr yaml zoo]; }; + rStrava = derive2 { name="rStrava"; version="1.1.4"; sha256="00y400znkwyr6y33wiz0jikpa31a60hdcmsi9x3724zwjh28vynj"; depends=[bitops dplyr geosphere ggplot2 ggrepel googleway httpuv httr magrittr plyr purrr RCurl rvest tibble tidyr V8 XML xml2]; }; rTG = derive2 { name="rTG"; version="0.2.2"; sha256="0f1syh2v8a0klcz7rvi8nrn1qv8rjl69ssrliqnh2zpy7c6ck9xs"; depends=[brnn dplyr ggplot2 knitr magrittr mgcv]; }; rTRNG = derive2 { name="rTRNG"; version="4.23.1-1"; sha256="0jlkr57afkg6axkdk020rd3nybx1qzwvy1hjgfw8fwvm79x0kpr7"; depends=[Rcpp RcppParallel]; }; rTableICC = derive2 { name="rTableICC"; version="1.0.7"; sha256="1z896675kmm9p5dnmcnsz2205ynf05laqcxvlc9y0g5i0x8rf8v6"; depends=[aster partitions]; }; @@ -14607,7 +14636,6 @@ in with self; { rWishart = derive2 { name="rWishart"; version="0.1.2"; sha256="0wzijc454mrvmggb7a5jqwjbmk0kzr4bmy0iwniz5cn343pr1rri"; depends=[lazyeval MASS Matrix]; }; rYoutheria = derive2 { name="rYoutheria"; version="1.0.3"; sha256="1r63ggy4knwzxnpjkmsn7zwmwfaznm8mmxl7r9ph10wz4sblgygl"; depends=[plyr RCurl reshape2 RJSONIO]; }; ra4bayesmeta = derive2 { name="ra4bayesmeta"; version="1.0-7"; sha256="07fcjqw8w787pcfzjxxwq6160433ms6xk9qrvvm8ybxd7n0f5i44"; depends=[bayesmeta]; }; - rabhit = derive2 { name="rabhit"; version="0.1.5"; sha256="0dqzcv241g2b2slygq87w4qkdxalr58zs61k7485b8745xansxmv"; depends=[alakazam cowplot data_table dendextend dplyr fastmatch ggdendro ggplot2 gridExtra gtable gtools htmlwidgets plotly plyr RColorBrewer reshape2 rlang splitstackshape stringi tidyr tigger]; }; rabi = derive2 { name="rabi"; version="1.0.2"; sha256="0jndx1gvsnsv1xrx3ismgvjp7d4kj3436zcawvw32c5klvxx0y4j"; depends=[numbers polynom shiny stringdist]; }; raceland = derive2 { name="raceland"; version="1.1.1"; sha256="1sb56id7h1nm34a7kf6abfxwh4kmnnzc51x23cijq6fd3jm4ggnr"; depends=[comat fasterize plotwidgets raster Rcpp RcppArmadillo rgdal sf]; }; racir = derive2 { name="racir"; version="2.0.0"; sha256="0qpjnaifx4z1jvyrc8p5jny0ci20w2ri1rs68sv9b93nkaiixnps"; depends=[]; }; @@ -14628,7 +14656,7 @@ in with self; { radous = derive2 { name="radous"; version="0.1.3"; sha256="1pip3givlkzb8i65nz6w724818jjr8j8nizpc3g35r9bvpmn7c2y"; depends=[checkmate curl glue httr readr]; }; radsafer = derive2 { name="radsafer"; version="2.2.5"; sha256="08088mifqlhkg8qrly2v1idvzl96fg2zymn812yqwppxjgcymzbz"; depends=[dplyr ggplot2 ggthemes magrittr qpdf RadData readr rlang scatterplot3d stringr utf8]; }; rafalib = derive2 { name="rafalib"; version="1.0.0"; sha256="1dmxjl66bfdgrybhwyaa8d4i460liqcdw8b29a6w7shgksh29m0k"; depends=[RColorBrewer]; }; - ragg = derive2 { name="ragg"; version="1.1.3"; sha256="0ppypfq1vipwjngmiwdx1sj6x7m41v3dlnbsixdlnrf2nx82kxb2"; depends=[systemfonts textshaping]; }; + ragg = derive2 { name="ragg"; version="1.2.0"; sha256="1wbk7vny8435ii3aak586imd0dgh4ri55kqypx5b10x6ygp32avb"; depends=[systemfonts textshaping]; }; rags2ridges = derive2 { name="rags2ridges"; version="2.2.5"; sha256="0aqfm8f58xrq81bd80parkwj28i6m0bxdpq6qp1iy3qyxsq5as64"; depends=[expm fdrtool ggplot2 graph gRbase Hmisc igraph RBGL Rcpp RcppArmadillo reshape RSpectra sfsmisc snowfall]; }; ragt2ridges = derive2 { name="ragt2ridges"; version="0.3.4"; sha256="17i3z0p3a4dqa0bch5l1r830w5nlxhdg71y82jipp6cfiwli588z"; depends=[abind Biobase CGHbase expm fdrtool igraph MASS Matrix mvtnorm rags2ridges Rcpp RcppArmadillo]; }; ragtop = derive2 { name="ragtop"; version="1.1.1"; sha256="0vgc2q71g8ysccq19kbk9a4swxgd5qj91xm4bshfgdg5chxqnb50"; depends=[futile_logger limSolve]; }; @@ -14639,7 +14667,7 @@ in with self; { rainfarmr = derive2 { name="rainfarmr"; version="0.1"; sha256="1gasnmyjnis6vv0krx6299ck2a6v9v1fgqajzqdpjaz2fsxn245i"; depends=[]; }; rakeR = derive2 { name="rakeR"; version="0.2.1"; sha256="0cd89q6k0y9z1qk9k06iw56lhj4c52ckr0g4qv6q95lkyrbi3qg8"; depends=[ipfp wrswoR]; }; ralger = derive2 { name="ralger"; version="2.2.4"; sha256="1j0np7h051dglva3dj9b64fagr99hvpsza1q2fnc7g3x1ki7mgni"; depends=[crayon curl dplyr robotstxt rvest stringi stringr tidyr xml2]; }; - ramchoice = derive2 { name="ramchoice"; version="1.1"; sha256="1im9r95109919hfmici6avdqxh3a375wmg2lfy75z1gjivvcygbr"; depends=[MASS]; }; + ramchoice = derive2 { name="ramchoice"; version="2.0"; sha256="113kyqpq2yhlvf4wyz9a8cqcqlg7rv9q5hv3lfxlgifsa7jvgnjm"; depends=[MASS]; }; ramcmc = derive2 { name="ramcmc"; version="0.1.2"; sha256="1a4r8010bsz5lzpznmr6akxjiif35kaylp2h72ky7gg4qn0bhpxz"; depends=[Rcpp RcppArmadillo]; }; rameritrade = derive2 { name="rameritrade"; version="0.1.5"; sha256="1yp655zy1zn86x49adg3wwq8jvflm64a8gyaf9f3w75ihjy470bf"; depends=[dplyr httr jsonlite lubridate magrittr urltools]; }; ramify = derive2 { name="ramify"; version="0.3.3"; sha256="0cxmkxhshg0vrcxai2gbm4iih04f44liv5nh5jiq85hjz8qbhdi2"; depends=[]; }; @@ -14669,7 +14697,7 @@ in with self; { randomsearch = derive2 { name="randomsearch"; version="0.2.0"; sha256="0ywr4ms66p5nmq8bzy04gbvmpp0nhfyf8rvynhr2c4alqva9x3yi"; depends=[checkmate fs parallelMap ParamHelpers smoof]; }; randquotes = derive2 { name="randquotes"; version="0.1.1"; sha256="0fj9vx0c4059511wka7ip30yz87y144pz7ny840gp72qm73pp8li"; depends=[curl httr jsonlite xml2]; }; randtests = derive2 { name="randtests"; version="1.0"; sha256="03z3kxl4x0l91dsv65ld9kgc58z82ld1f4lk18i18dpvwcgkqk82"; depends=[]; }; - randtoolbox = derive2 { name="randtoolbox"; version="1.30.1"; sha256="0qg20ar6qns858jdzqhmfq7yji81czhr6cim257958gqpj66sn95"; depends=[rngWELL]; }; + randtoolbox = derive2 { name="randtoolbox"; version="1.31.1"; sha256="1b9vjzqg014hxp1vfb62m01d7xim5vmpbyxzlbll49bqas0jx69h"; depends=[rngWELL]; }; rangeBuilder = derive2 { name="rangeBuilder"; version="1.5"; sha256="17wyf9ljgdbpxgl9gy6f1279h88k0rjfcarw7kgp145bm3c36jwf"; depends=[alphahull cleangeo pbapply raster Rcpp rgdal rgeos sp stringi]; }; rangeMapper = derive2 { name="rangeMapper"; version="2.0.2"; sha256="00wnjvmqkqjdw1r60z95ax0zh5wsvclk5qqwwwv50d0p9kjv4939"; depends=[data_table DBI exactextractr future future_apply glue magrittr progressr raster RSQLite sf]; }; rangeModelMetadata = derive2 { name="rangeModelMetadata"; version="0.1.4"; sha256="102z7ysbw0i1mbnwg0v3h0i094ksw91q84a53qyxndq4m6f557aj"; depends=[dplyr jsonlite MASS raster rgbif rgdal rgeos shiny sp spatstat spocc spThin]; }; @@ -14696,7 +14724,7 @@ in with self; { rareGE = derive2 { name="rareGE"; version="0.1"; sha256="0v3a2wns77q923ilddicqzg0108f8kmfdnsff1n65icin7cfzsny"; depends=[MASS nlme survey]; }; rareNMtests = derive2 { name="rareNMtests"; version="1.1"; sha256="13r2hipqsf8z9k48ha5bh53n3plw1whb7crpy8zqqkcac8444b2z"; depends=[vegan]; }; rarms = derive2 { name="rarms"; version="1.0.0"; sha256="11wjxd3pxvjv1j2nz26l8f0kykk9w6lf08izhivfngp63dk2akns"; depends=[jsonlite]; }; - rasciidoc = derive2 { name="rasciidoc"; version="3.1.3"; sha256="0ff41czw8mmg2rf2k8swssnm305wrqc0jn674in36s9mizdqiwdy"; depends=[checkmate document fritools gert highr knitr reticulate]; }; + rasciidoc = derive2 { name="rasciidoc"; version="3.1.4"; sha256="0wy16zaz4b8yjjb9vwxwz327z3r56nmsxr63rfcammfflz0hv3d9"; depends=[checkmate document fritools gert highr knitr reticulate]; }; rasclass = derive2 { name="rasclass"; version="0.2.2"; sha256="1lsmv8kh519mz3szb4k9s17fz1480cw0i4qk12givhhm2rpzjy50"; depends=[car e1071 nnet randomForest RSNNS]; }; rassta = derive2 { name="rassta"; version="1.0.1"; sha256="03abcgg5310avlwmphr6inw1dnyj2g9rp1jzry9wfi3yshpf15b4"; depends=[cluster data_table dplyr DT foreach GGally ggplot2 histogram KernSmooth kohonen plotly raster rlang scales shiny stringdist stringi terra]; }; raster = derive2 { name="raster"; version="3.5-2"; sha256="0wixw1ixnmcmkwczpj8m90c76727zira2rl4ighashggydkm2mlr"; depends=[Rcpp sp terra]; }; @@ -14754,7 +14782,7 @@ in with self; { rblt = derive2 { name="rblt"; version="0.2.4.5"; sha256="1pfg8sgm532czz3lhpx7dmg5zik3bc0p4vdq9s0qk5zgq7nnm9sj"; depends=[data_table dygraphs hdf5r shiny xts]; }; rbmn = derive2 { name="rbmn"; version="0.9-4"; sha256="039scbjzigj9ks62l8yagfpr3bpslvxg1nqv22pyw8jay8i6993g"; depends=[MASS]; }; rbokeh = derive2 { name="rbokeh"; version="0.5.2"; sha256="1h2fpzqf17pw9d09r1g1iyxsj5qma4fsk8vnar7f1z4fjyypvi6q"; depends=[digest gistr hexbin htmlwidgets jsonlite lazyeval magrittr maps pryr scales]; }; - rbooster = derive2 { name="rbooster"; version="1.0.2"; sha256="0y2lk73nmfghaafhgrbc5i4kg2p7wbky1qlvyaas5v5aqps3smqk"; depends=[earth Hmisc rpart]; }; + rbooster = derive2 { name="rbooster"; version="1.1.0"; sha256="0v524hjp3im94hbf6kbmi4xhqnak135mmpmq1sni1c97dqal2hqy"; depends=[earth Hmisc rpart]; }; rbounds = derive2 { name="rbounds"; version="2.1"; sha256="1h334bc37r1vbwz1b08jazsdrf6qgzpzkil9axnq5q04jf4rixs3"; depends=[Matching]; }; rbridge = derive2 { name="rbridge"; version="1.0.2"; sha256="0m4c61rdrhq1jw3rwq2ld29g5dchbk4sfpnq0wmwbvzhdjq76plc"; depends=[dplyr Matrix Rcpp RcppArmadillo]; }; rbscCI = derive2 { name="rbscCI"; version="0.1.0"; sha256="12r1f4yy5hx0sx1q77yzq3wxhbx8zgj9d1jfpa1hagvwcyd8bdxb"; depends=[BH Rcpp]; }; @@ -14768,6 +14796,7 @@ in with self; { rcarbon = derive2 { name="rcarbon"; version="1.4.2"; sha256="04s1gqrfa5hy93jnqj5sqii49gz7mq7nm23jnd0iwl48f847vka1"; depends=[doSNOW foreach iterators knitr snow sp spatstat spatstat_core spatstat_geom spatstat_linnet]; }; rcartocolor = derive2 { name="rcartocolor"; version="2.0.0"; sha256="08ljaag2mnhz2671zvwji1sp003z94lz30vjidmybm9fp8piqw5g"; depends=[ggplot2 scales]; }; rcbalance = derive2 { name="rcbalance"; version="1.8.5"; sha256="15qlk3cqwsvixl17l1fxcajrabmz4y7q5gz0a1pd66f6i1xskcqq"; depends=[MASS plyr]; }; + rcbayes = derive2 { name="rcbayes"; version="0.1.0"; sha256="00pr7fh33nsl84m5p32a010pyw2cgyjlqsjrlz3hlwwggwlfw1rw"; depends=[BH dplyr magrittr Rcpp RcppEigen RcppParallel Rdpack rlang rstan rstantools shiny shinythemes StanHeaders tibble tidybayes]; }; rcbsubset = derive2 { name="rcbsubset"; version="1.1.4"; sha256="0sfsmnxs4c8blzg0bb2ffb2xcsjv7pp39arnda988f7b2aas59wj"; depends=[MASS plyr]; }; rcc = derive2 { name="rcc"; version="1.0.0"; sha256="0a77d54c9qahhsjzpa0436ddsj4j44013r7rbxm0fjz04c0d2921"; depends=[]; }; rccdates = derive2 { name="rccdates"; version="1.0.0"; sha256="1f87qlw62am2qy1zzrz91vmsn8axhld44gak61xa7046675hm98s"; depends=[rccmisc]; }; @@ -14842,7 +14871,7 @@ in with self; { readMzXmlData = derive2 { name="readMzXmlData"; version="2.8.1"; sha256="03lnhajj75i3imy95n2npr5qpm4birbli922kphj0w3458nq8g8w"; depends=[base64enc digest XML]; }; readODS = derive2 { name="readODS"; version="1.7.0"; sha256="1hi217ab7hp15jsbzi5ak57cqf8jn2rv78bnn74q72gn9mrfra7n"; depends=[cellranger readr stringi xml2]; }; readOffice = derive2 { name="readOffice"; version="0.2.2"; sha256="0dg7fwxdl41nrjqnxvh9rpz0la99iid0wy51gncjwrh3s85fj2ks"; depends=[magrittr purrr rvest xml2]; }; - readabs = derive2 { name="readabs"; version="0.4.9"; sha256="0qqfks7ar2zv67rd8ni5dz15a85x82xpjvhw9iazdcfcmp5aj8dl"; depends=[dplyr fst glue httr hutils purrr readxl rlang rvest stringi tidyr xml2]; }; + readabs = derive2 { name="readabs"; version="0.4.10"; sha256="1sbv34v2b0ibml9fhbkpg4yyb5pmggbfn0iibxb47pdj08srf4cq"; depends=[dplyr fst glue httr hutils purrr readxl rlang rvest stringi tidyr xml2]; }; readbitmap = derive2 { name="readbitmap"; version="0.1.5"; sha256="14825906l326w59g6apy00j55jg3h5kx2r6s031f4gdkbrc7szbk"; depends=[bmp jpeg png tiff]; }; readbulk = derive2 { name="readbulk"; version="1.1.3"; sha256="0rqz0r5ygwgfqkzv2130sciz3j2p888c2005wsk1m5403syi78an"; depends=[jsonlite plyr]; }; reader = derive2 { name="reader"; version="1.0.6"; sha256="1x489q3ljap4zpny68mx83mgxaqiwlkglcy57whwhnh33dd7qp4h"; depends=[NCmisc]; }; @@ -14950,7 +14979,7 @@ in with self; { rela = derive2 { name="rela"; version="4.1"; sha256="00ksm7zh1mpd2d5c5d823id3sxj0h3x0ccg6a40fadibvr1ay3ny"; depends=[]; }; relaimpo = derive2 { name="relaimpo"; version="2.2-6"; sha256="1v2zvakzrnc89dshhpkrikfwa7l786sk5vnz4khil5f53biahm4r"; depends=[boot corpcor MASS mitools survey]; }; relatable = derive2 { name="relatable"; version="1.0.0"; sha256="0147gin6dn76gg7gassar64f0w2gny1sh0k60v7914qhb4sj4s7i"; depends=[compare]; }; - relations = derive2 { name="relations"; version="0.6-9"; sha256="0vq4wawj9k3a9n70i7y6c7k2jylmyczsi6iqssydn5z5h48m15fj"; depends=[cluster sets slam]; }; + relations = derive2 { name="relations"; version="0.6-10"; sha256="13h6snbbczwk4zcpsmbbrxvhy6dwv1pm2zwfh0cz2sr7djhb0q5n"; depends=[cluster sets slam]; }; relaxo = derive2 { name="relaxo"; version="0.1-2"; sha256="1rzmq7q3j271s6qwwrmwidv0vxcjpgjhyiqgr6fkczkai2lbnd8x"; depends=[lars]; }; reldist = derive2 { name="reldist"; version="1.6-6"; sha256="09vips7spcz0fahrpy0bl15hk43zgnq74h189hmygyi41l95aywa"; depends=[Hmisc mgcv]; }; relen = derive2 { name="relen"; version="1.0.1"; sha256="0br7c3j30a1yc61pyinmk5lvk8zw9rivd0z2096g6crgmbzix8ml"; depends=[]; }; @@ -14963,6 +14992,7 @@ in with self; { relliptical = derive2 { name="relliptical"; version="0.1.0"; sha256="122gv5pckx87hsczfqsac6nwh54a6y1ka066aab2zlrhrlx0wx2y"; depends=[FuzzyNumbers_Ext_2 matrixcalc Rcpp RcppArmadillo RcppEigen RcppNumerical Rdpack Ryacas0]; }; relsurv = derive2 { name="relsurv"; version="2.2-5"; sha256="0bqmr493jdk3vkw386gs2bk688bja5yg14ax1rb88bf6i6fqqcy8"; depends=[date survival]; }; rem = derive2 { name="rem"; version="1.3.1"; sha256="1q4p26irhhl1lvc0ydv9wmng1y635zm16szpl7gwq1kyn2p90rai"; depends=[doParallel foreach Rcpp]; }; + rema = derive2 { name="rema"; version="0.0.1"; sha256="15b68pynac9ff9bina0mf94absvfsn21xcdmvd4lbl97pxwj83ph"; depends=[progress Rcpp Rdpack]; }; remap = derive2 { name="remap"; version="0.2.1"; sha256="0fvi0scrjcghkfamdilfyqqn0v9zlgpjdkqwk4ylhpb85x5pv534"; depends=[sf units]; }; rematch = derive2 { name="rematch"; version="1.0.1"; sha256="0y3mshvpvz9csmq8hk8jbabx4nxlv5sckvfzvm6920ndg34xw2d4"; depends=[]; }; rematch2 = derive2 { name="rematch2"; version="2.1.2"; sha256="1fzpz8vhghw8ygwg6rsvfy3783pqk7ch029i5851lwypkplvz77y"; depends=[tibble]; }; @@ -14975,6 +15005,7 @@ in with self; { renpow = derive2 { name="renpow"; version="0.1-1"; sha256="0kbfpzr17fvf5zzxpzdhvfmrqmlkba2w3rzxl5q5ac1w3h75gfhc"; depends=[]; }; rentrez = derive2 { name="rentrez"; version="1.2.3"; sha256="0x1g2f6hvkqqlb39z8m5qxhcvsizddic5i7rpqw0wy77xfbna9gv"; depends=[httr jsonlite XML]; }; renv = derive2 { name="renv"; version="0.14.0"; sha256="194hcxikdnna526bvyz9y60ccmmm9fib5g0w9dqivrg0fld23lyh"; depends=[]; }; + repairData = derive2 { name="repairData"; version="0.1.0"; sha256="1l5ag952165b0nm59mp9v768dp53xm51ckg01i4c6l04qfzx1lm7"; depends=[]; }; repana = derive2 { name="repana"; version="1.23.2"; sha256="1wic76sln37qjdrviaz689c5gjf4pc3ffdgvzcvjh0kjvl7d8jfh"; depends=[config DBI dplyr lubridate magrittr openxlsx pool processx readr rmarkdown rstudioapi]; }; repeated = derive2 { name="repeated"; version="1.1.2"; sha256="19kcsj96i1zpnwfan3gz5vrzc2gqlah0wrdr9vb4vvacz45wcdfq"; depends=[rmutil]; }; repec = derive2 { name="repec"; version="0.1.0"; sha256="0alr9fbmfxmnnnn1qymy65crcycynwz435jj0vangbb4p0qhv8pm"; depends=[jsonlite]; }; @@ -15063,12 +15094,13 @@ in with self; { rfacts = derive2 { name="rfacts"; version="0.1.1"; sha256="1qkc619vhph6lgrf59kbz9cda2vqwfvb5b9mm2f11qqy310ha9aj"; depends=[digest fs tibble xml2]; }; rfieldclimate = derive2 { name="rfieldclimate"; version="0.1.0"; sha256="1s7awczna9dxdq97sr5fsbs4qv7rx4wi2z3inwdp33md1bvyq4i7"; depends=[digest dplyr httr jsonlite lubridate magrittr purrr tidyr]; }; rfigshare = derive2 { name="rfigshare"; version="0.3.7"; sha256="1qgzn0mpjy4czy0pnbi395fxxx84arkg8r7rk8aidmd34584gjiq"; depends=[ggplot2 httpuv httr plyr RJSONIO XML yaml]; }; + rfinance = derive2 { name="rfinance"; version="0.1.0"; sha256="0xy4jw50vqbvicpwc3drzgg8ywgpdyxda7bqym52c76vsghcmq2d"; depends=[cli curl data_table dplyr glue httr janitor lubridate magrittr PerformanceAnalytics readr rvest stringr tibble TTR xml2 xts]; }; rfinterval = derive2 { name="rfinterval"; version="1.0.0"; sha256="1z7v0sbql6g2h3fr1268nj79rbx1d33hjfaraxhbikrjgb8mbp0w"; depends=[MASS ranger]; }; rfishbase = derive2 { name="rfishbase"; version="3.1.9"; sha256="0mviki09ydgbnd5mgbikvijxjfg7jrf836campnlz0b9xvk32kb8"; depends=[arkdb curl DBI dbplyr dplyr gh magrittr memoise progress purrr readr rlang RSQLite stringr]; }; rfishdraw = derive2 { name="rfishdraw"; version="0.1.0"; sha256="0204s8jy6shr694hacrq4j0lia9l59rk8kc75sdw87c09q7kjld2"; depends=[ggplot2 jsonlite]; }; rfisheries = derive2 { name="rfisheries"; version="0.2"; sha256="16j3hn1py8khqadmh81qsg76c62wzqkaq3fn39z0z5mgynmcm62j"; depends=[assertthat data_table ggplot2 httr rjson]; }; rfishnet2 = derive2 { name="rfishnet2"; version="0.2.0"; sha256="0g90h4353kp7szv3971kb4l5x3x08qx4f9ln85n5g3b3zdg77dkz"; depends=[dplyr ggplot2 pracma rworldmap sf]; }; - rflexscan = derive2 { name="rflexscan"; version="0.4.0"; sha256="1hp8crrs0f534j60db1byi3jcn815kl1i7afrzh6ww48mxnmxrhj"; depends=[igraph Rcpp rgdal sp]; }; + rflexscan = derive2 { name="rflexscan"; version="1.0.0"; sha256="1azjdri1dnxqd128p3iya1x36bbhhrckmj08rp23jzfi5zd71c8s"; depends=[igraph Rcpp rgdal sp]; }; rfm = derive2 { name="rfm"; version="0.2.2"; sha256="1s8h9ll4l5xq3m7ib83zrab49p5q4wclk8qiy2hgjr2hq1sb7wak"; depends=[dplyr ggplot2 ggthemes lubridate magrittr RColorBrewer rlang tibble tidyr xplorerr]; }; rfoaas = derive2 { name="rfoaas"; version="2.1.0"; sha256="0w6m3lvfb60a2zfvyc0ksnfllb2ndy45b301vk9f3nr27lxdz6dm"; depends=[httr]; }; rfordummies = derive2 { name="rfordummies"; version="0.1.5"; sha256="1glzc20sbv90fbazy3wh6drqd5dkh47s3fjqzgm78dkmj6gp9hdv"; depends=[openxlsx]; }; @@ -15198,7 +15230,7 @@ in with self; { rmarchingcubes = derive2 { name="rmarchingcubes"; version="0.1.3"; sha256="0cdmy728irmbd40xsc2k4r2g8am7s72ks7cw465fa92ml2xa6iq8"; depends=[Rcpp RcppArmadillo]; }; rmargint = derive2 { name="rmargint"; version="2.0.2"; sha256="0irq5114dd8pngl6k13r2rrsivijiqfldm6mby0q5a9wrj2vmwc9"; depends=[]; }; rmarkdown = derive2 { name="rmarkdown"; version="2.11"; sha256="0xcpg9d009a71p5i6jczw02qcp907p5d52lp6vclrsp7019jawck"; depends=[evaluate htmltools jquerylib jsonlite knitr stringr tinytex xfun yaml]; }; - rmatio = derive2 { name="rmatio"; version="0.15.0"; sha256="1lrr6lga8inai3d0sicvyj2km4rc46qrr827m0lzjf7687i7mjxm"; depends=[Matrix]; }; + rmatio = derive2 { name="rmatio"; version="0.16.0"; sha256="1ar8736x5ww4cky4qp8fxlwa7p00yycs31ryrqsmbwhwvg2ddlkk"; depends=[Matrix]; }; rmcfs = derive2 { name="rmcfs"; version="1.3.5"; sha256="0rbq2b9fw1x44v7ifxp8qgp4yciinw2sw9mqp4ms5jsxznpi2pi6"; depends=[data_table dplyr ggplot2 gridExtra igraph reshape2 rJava stringi yaml]; }; rmcorr = derive2 { name="rmcorr"; version="0.4.4"; sha256="1g70savkj04mphmk4636k5jkrk3cbjs8np1r4ayki50n4zzb6p0j"; depends=[psych RColorBrewer]; }; rmdHelpers = derive2 { name="rmdHelpers"; version="1.2"; sha256="1ahzbs8z7wvh1dwbq1kq8wrjrknxi2gck63k70gj0swjvgk0ih5r"; depends=[dplyr knitr]; }; @@ -15238,11 +15270,12 @@ in with self; { rneos = derive2 { name="rneos"; version="0.4-0"; sha256="07b3vb0h36ilwb8iylgppl8wpi84f583frmscpj236s1aihqwrmx"; depends=[RCurl XML]; }; rnetcarto = derive2 { name="rnetcarto"; version="0.2.4"; sha256="0fk5rym6zp049bl1f7bkl2231mjh3pgnxn0nhvmzpsah08rh4rr6"; depends=[]; }; rngSetSeed = derive2 { name="rngSetSeed"; version="0.3-2"; sha256="00mqjjkhbnvxqkf1kz16gipsf98q62vmhx9v8140qs7c4ljbhc3a"; depends=[]; }; - rngWELL = derive2 { name="rngWELL"; version="0.10-6"; sha256="0pjjcs9pqj7mf0mhb2cwd0aanqpwnm65bm86hk6mi2vw8rgnj2vv"; depends=[]; }; + rngWELL = derive2 { name="rngWELL"; version="0.10-7"; sha256="0f1dxxaimfb0fww8ym9ciqf6q760ai46wxldl37m5mfpd57ca00c"; depends=[]; }; rngtools = derive2 { name="rngtools"; version="1.5.2"; sha256="0kd7x214cqw7hzpmk1iqy1bn7j6x0ady0yz2hsdbclbq9k57d33z"; depends=[digest]; }; rngwell19937 = derive2 { name="rngwell19937"; version="0.6-0"; sha256="0m6icqf7nckdxxvmqvwfkrpjs10hc7l8xisc65q8iqpnpwl5p2f6"; depends=[]; }; rnn = derive2 { name="rnn"; version="1.4.0"; sha256="0k960jylbvg8r453430d8dpdzydkk3yr5np8rxkay79533ikrcgy"; depends=[shiny sigmoid]; }; rnoaa = derive2 { name="rnoaa"; version="1.3.4"; sha256="1yrasq4wgi5q783zyv00xxqzv0r8mrzdv9q7mkabawdmpxji3f1y"; depends=[crul data_table dplyr geonames ggplot2 gridExtra hoardr isdparser jsonlite lubridate rappdirs scales tibble tidyr tidyselect XML xml2]; }; + rnpn = derive2 { name="rnpn"; version="1.2.3"; sha256="13dkl66x9lpm7ycql53by6vln24q8lira2sjd4rvpxghjy1czfva"; depends=[curl data_table httr jsonlite magrittr plyr raster rgdal sp tibble XML]; }; rnr = derive2 { name="rnr"; version="0.2.1"; sha256="1z9bab3qmq8d79bcvjzldbxlah2w8mqp2ifd0cn1348dafwa0dhi"; depends=[assertthat purrr]; }; rnrfa = derive2 { name="rnrfa"; version="2.0.4"; sha256="0sy64bgb94ksgcy37kmj61iphf66i0jpx0qlrcsr24zr92syc1n2"; depends=[curl ggmap ggplot2 httr jsonlite lubridate rgdal sp tibble zoo]; }; roadoi = derive2 { name="roadoi"; version="0.7.1"; sha256="1diprwir4agp2ifcgfsla1kd5m0y5cnc7ixhh6pqdvlgax5wx96w"; depends=[dplyr httr jsonlite miniUI plyr purrr rlang shiny tibble tidyr]; }; @@ -15252,6 +15285,7 @@ in with self; { robber = derive2 { name="robber"; version="0.2.2"; sha256="053yiwjlsg7z9p5l60wddm1wf5wni54a28yp6x4hbfkgaazvby02"; depends=[blockmodels ggplot2 GREMLINS igraph magrittr pammtools partitions purrr]; }; robcbi = derive2 { name="robcbi"; version="1.1-3"; sha256="0rj732qdd0wd9d9pxldnsw5rif5d7wz327iydvxcf5x8lgvk42jd"; depends=[robeth]; }; robcor = derive2 { name="robcor"; version="0.1-6"; sha256="1hw8simv93jq8a5y79hblhqz157wr8q9dzgm0xhvvv5nkzyqkpzf"; depends=[]; }; + robcp = derive2 { name="robcp"; version="0.3.3"; sha256="0mdg61k76dz5a7wggdlq8cfym8bvzl5ybm7hhc8kvyllmmvvb1y9"; depends=[Rcpp]; }; roben = derive2 { name="roben"; version="0.1.0"; sha256="18k0h1y2xhvdssg28b9s4whn3kcbdgkz55dp1y3rrczw8xrm54mm"; depends=[glmnet Rcpp RcppArmadillo]; }; robeth = derive2 { name="robeth"; version="2.7-6"; sha256="1x0hzgq7jwl83wwmy581ia8009v0j95aksnr5ywpflnqm76rj6v2"; depends=[]; }; robets = derive2 { name="robets"; version="1.4"; sha256="0lvzfpv6569pjysblhadd05sglx0qvyr9wipb9cpiya4a1992n61"; depends=[forecast Rcpp]; }; @@ -15269,7 +15303,7 @@ in with self; { robslopes = derive2 { name="robslopes"; version="1.0.2"; sha256="04767ggjjsgm31ysk5xw8jvdnjdbk4fmrrsi83ksz746kl0xafzp"; depends=[Rcpp RcppArmadillo]; }; robsurvey = derive2 { name="robsurvey"; version="0.1.1"; sha256="0rf2sd7maz565hlgpyhvkswqyck01hif4mg5isbnnky9n3nc98pi"; depends=[survey]; }; robumeta = derive2 { name="robumeta"; version="2.0"; sha256="1ynlfxlzh442jd1cf02j0f948m16d536a30gb4bf7208baqri1vg"; depends=[]; }; - robust = derive2 { name="robust"; version="0.5-0.0"; sha256="1ks5scp8bnicl9j1r8yrmz668fjs6ifdmi540zw6d2ck500bbw42"; depends=[fit_models lattice MASS robustbase rrcov]; }; + robust = derive2 { name="robust"; version="0.6-0"; sha256="1nq21ka5qyyyx84vcpycwk553z9a0s94hlgqaqzghmxnygdhg7sf"; depends=[fit_models lattice MASS robustbase rrcov]; }; robustBLME = derive2 { name="robustBLME"; version="0.1.3"; sha256="18wx116l1riy4wn4083kxl637mkyyi9wbwnmvhkgqw3vb36s4vxd"; depends=[doParallel foreach iterators lme4 mvtnorm numDeriv Rcpp RcppArmadillo]; }; robustDA = derive2 { name="robustDA"; version="1.2"; sha256="0kxdqvv17dgnlqp0hkazwfqsg3h4g9gw1w57blwpay67xp4d1jyx"; depends=[MASS mclust Rsolnp]; }; robustETM = derive2 { name="robustETM"; version="1.0"; sha256="1dlj79v08bls500lb81rya6vwx58h97rpq1sy9zwd3mfl9b6awp9"; depends=[]; }; @@ -15292,7 +15326,7 @@ in with self; { rocTree = derive2 { name="rocTree"; version="1.1.1"; sha256="1hd5v47gymffg5829swpd38xscm4vq75d46fibwkrr7jp9iy37ra"; depends=[data_tree DiagrammeR flexsurv ggplot2 MASS Rcpp RcppArmadillo survival]; }; rocc = derive2 { name="rocc"; version="1.3"; sha256="1j15l28c7kv7x850ycjprqi5gpbsl6wfv97h9lbrx11q5l4r9ivb"; depends=[ROCR]; }; roccv = derive2 { name="roccv"; version="1.2"; sha256="18kq2gzcbz97dw168xppql8k3slpkfl8yv1d8ac48damlhvipif1"; depends=[glmnet pROC]; }; - rock = derive2 { name="rock"; version="0.4.3"; sha256="0rnvjjl1w0d5x688za63yj2dnldr988529h05rpbhyg6gwfgq42a"; depends=[data_tree DiagrammeR DiagrammeRsvg dplyr ggplot2 glue htmltools markdown purrr yaml yum]; }; + rock = derive2 { name="rock"; version="0.5.1"; sha256="1abyr9i2p1xjll6cry8hmbgskwr10ki4r0zw29qg8iz2rpxl0zpp"; depends=[data_tree DiagrammeR DiagrammeRsvg dplyr ggplot2 glue htmltools markdown purrr yaml yum]; }; rockchalk = derive2 { name="rockchalk"; version="1.8.144"; sha256="07dp1n155b9gfvk8l30h6bhjbhbylsjxfzns08mryn4mxj3nqpnb"; depends=[carData kutils lme4 MASS]; }; rockr = derive2 { name="rockr"; version="1.0.0"; sha256="190xaxcbb7miqw5mxyfqqlb2vzacifc8a7a3cqfdlpxra4d4jc25"; depends=[httr jsonlite mime progress]; }; roclang = derive2 { name="roclang"; version="0.1.2"; sha256="139m7biiidcbc3a9nnp5qpdysszrzldhf6dp64rfshp3rjpfssiq"; depends=[dplyr magrittr purrr rex rlang roxygen2 stringr tibble tidyr]; }; @@ -15306,7 +15340,7 @@ in with self; { rollRegres = derive2 { name="rollRegres"; version="0.1.3"; sha256="1rf6hdbndindq6kr5yzyqq4jy1c11shfdvjb8mwm957dd0kbs3rx"; depends=[checkmate Rcpp RcppArmadillo]; }; rollbar = derive2 { name="rollbar"; version="0.1.0"; sha256="1q2ym0vkgbdnibxmwx0bp9c20g3bm8fzwwgs3j4bxg1ydg3gnkj4"; depends=[httr]; }; rolldown = derive2 { name="rolldown"; version="0.1"; sha256="1awr8lcxz7y9mjhia4p85jvixc72gj525gk2jjl13njgq6shp0b5"; depends=[bookdown htmltools jsonlite]; }; - rollinglda = derive2 { name="rollinglda"; version="0.1.0"; sha256="13lpjamki3yk0ngfkzx985y04ahj8762slji29vjrlcc72lsmgd5"; depends=[checkmate data_table ldaPrototype lubridate tosca]; }; + rollinglda = derive2 { name="rollinglda"; version="0.1.1"; sha256="1sk6szcqsr3nbkwnsdjpsk1fcyk7s4h2zsm02rmbi1h0r0yxb0zr"; depends=[checkmate data_table ldaPrototype lubridate tosca]; }; rollmatch = derive2 { name="rollmatch"; version="2.0.2"; sha256="1bm1yc2z9byj4m9gz0il47y8drd3qzsb5lwb22a22axy306lqfqj"; depends=[dplyr magrittr]; }; roloc = derive2 { name="roloc"; version="0.1-1"; sha256="0xynj12gp010c23f6ll9p343vwgxwa22s771p1w2pi65cj2ixhas"; depends=[colorspace]; }; rolocISCCNBS = derive2 { name="rolocISCCNBS"; version="0.1"; sha256="100jh5m2c1zp5wg3wd4y2i47dzx1j0g6lfwyqmwk4bz99yzzz5am"; depends=[colorspace roloc]; }; @@ -15327,7 +15361,7 @@ in with self; { rorcid = derive2 { name="rorcid"; version="0.7.0"; sha256="1d0s5w48ksyj152nc4xq5w0nsimab8jc5fgspdwnbas2g8a52igr"; depends=[crul data_table fauxpas httr jsonlite tibble xml2]; }; rorqual_morpho = derive2 { name="rorqual.morpho"; version="0.1.1"; sha256="1475yhb5qwj4zpsc4gqqpzs7qvyddxwc63i1f4rhnv6id2hi4msp"; depends=[dplyr magrittr]; }; rorutadis = derive2 { name="rorutadis"; version="0.4.2"; sha256="13a7xj4qw1nd8xgrqhrki3php960lgy9gy38sg4kpvs4j2rwijzc"; depends=[ggplot2 gridExtra hitandrun Rglpk]; }; - rosetta = derive2 { name="rosetta"; version="0.3.6"; sha256="1f3wmngx8k3b99qgzy7lzm5pgqk4rmkw1pfhk5a9vhlsibik8h27"; depends=[car diptest ggplot2 ggrepel gridExtra kableExtra knitr lavaan lme4 multcompView pander plyr psych pwr rio rmdpartials ufs viridis]; }; + rosetta = derive2 { name="rosetta"; version="0.3.8"; sha256="1krc2254z1sy5gi8alvq12bmvmcm16ynpngvasxab09jjfgjsp17"; depends=[car diptest ggplot2 ggrepel gridExtra kableExtra knitr lavaan lme4 multcompView pander plyr psych pwr rio rmdpartials ufs viridis]; }; rosetteApi = derive2 { name="rosetteApi"; version="1.14.4"; sha256="166p3dvib0xpvhkb92b3imassv1b9mrblz2m05jai2nzlz0q7hzk"; depends=[httr jsonlite]; }; rosm = derive2 { name="rosm"; version="0.2.5"; sha256="10n3yzhk29i3mzbcg6nkjqgvwc9n53ax0d7imn9l4a9msa06as07"; depends=[abind curl jpeg plyr png prettymapr rgdal rjson sp]; }; rospca = derive2 { name="rospca"; version="1.0.4"; sha256="1pxm34xsc2610n0i6dwcm4rhn016yqb03f8vrm93r7285c04n4q7"; depends=[elasticnet mrfDepth mvtnorm pcaPP pracma robustbase rrcov rrcovHD]; }; @@ -15444,7 +15478,7 @@ in with self; { rsprite2 = derive2 { name="rsprite2"; version="0.1.0"; sha256="0pflmdm83gskfbxha7r28w1w7xs2k8shp6w3py5mjjpklm2rn8ny"; depends=[checkmate Rdpack]; }; rsq = derive2 { name="rsq"; version="2.2"; sha256="1hjzk5mvva4b0r2r8bisg915iz32aiynp8w57d2xikdfb90nw5h0"; depends=[Deriv lme4 MASS Matrix nlme]; }; rsqliteadmin = derive2 { name="rsqliteadmin"; version="1.0.1"; sha256="1d9szm3nsr1q3hqrmapxdlymmgb3655n8v6x2vpcpahg54ajqrp5"; depends=[config data_table disk_frame DT fs golem magrittr RSQLite shiny shinyAce shinydashboard shinyFiles shinyjqui]; }; - rstac = derive2 { name="rstac"; version="0.9.1-4"; sha256="162y6lbn62r1lmn7x20klw293vj63bq8q1zm3zlyvgaq2im9y8h3"; depends=[crayon httr jsonlite magrittr]; }; + rstac = derive2 { name="rstac"; version="0.9.1-5"; sha256="08lnz49wba6w1rjrrpm3jpbd4vimhzn4215d049xc4zxqd0h6vbc"; depends=[crayon httr jsonlite lifecycle magrittr]; }; rstack = derive2 { name="rstack"; version="1.0.0"; sha256="19vbfmkd6ymadah1y1w5rn52f4hviddccyc6qj2cv5viqwbwws2z"; depends=[R6]; }; rstackdeque = derive2 { name="rstackdeque"; version="1.1.1"; sha256="0i1qqbfj0yrqbkad8bqc1qlxmyxpn7zycbnq83cdmfbilcmi87ql"; depends=[]; }; rstan = derive2 { name="rstan"; version="2.21.2"; sha256="0jh58qfrksd2j9w2zy4bajryivgp36m3xdb9mjrjqbk1ib9h83p3"; depends=[BH ggplot2 gridExtra inline loo pkgbuild Rcpp RcppEigen RcppParallel StanHeaders V8 withr]; }; @@ -15454,7 +15488,7 @@ in with self; { rstatix = derive2 { name="rstatix"; version="0.7.0"; sha256="0330y8iziffqg8j9j5h9zv4qcdyf8ybhmzxrr9fzq9nc6bf1gbm5"; depends=[broom car corrplot dplyr generics magrittr purrr rlang tibble tidyr tidyselect]; }; rstatscn = derive2 { name="rstatscn"; version="1.1.3"; sha256="07w7ixq1faq7mif2ksxcgl8n6ali9h0wx0nb2yz4kbdgvz68r7b9"; depends=[httr jsonlite]; }; rstiefel = derive2 { name="rstiefel"; version="1.0.1"; sha256="063nj6k2qzc5wd1dk6m6ld16sk2vlfa8ic86gc4qkqsla8l82fgg"; depends=[]; }; - rstoat = derive2 { name="rstoat"; version="1.0.0"; sha256="0chlkvdxkwa8fr1kh3rasph5x837v39jwjvwwcwf6fvqmfbgmfpn"; depends=[curl httr jsonlite keyring]; }; + rstoat = derive2 { name="rstoat"; version="1.0.1"; sha256="10ksslz675dgpd8ri4d6ranpabl9940g127i7sbhvccdgvz2j44i"; depends=[curl httr jsonlite keyring]; }; rstpm2 = derive2 { name="rstpm2"; version="1.5.2"; sha256="0c6l3z250b2kn6mh2xyb0bd2y5nsbj11n9xfi51dac9s8xq3v7m4"; depends=[bbmle BH deSolve fastGHQuad mgcv Rcpp RcppArmadillo survival]; }; rstream = derive2 { name="rstream"; version="1.3.6"; sha256="1mr869hff5wdpw6a7x71366y8dxf9vljbb11fssfkhcf7hm2ipnj"; depends=[]; }; rstudio_prefs = derive2 { name="rstudio.prefs"; version="0.1.7"; sha256="1b93hakw5wn8fp99zp22rm8yd27m1884ig1xx5bbcifgxanvic57"; depends=[cli dplyr fs jsonlite purrr rappdirs rlang rstudioapi rvest tibble]; }; @@ -15463,8 +15497,9 @@ in with self; { rsurface = derive2 { name="rsurface"; version="1.1.0"; sha256="1pymbgvr72nqd66wap5wrcizzx2k9bfr6vkxv6dkvjmi8q7jl2gv"; depends=[plotly rsm]; }; rsurfer = derive2 { name="rsurfer"; version="0.2"; sha256="14zd8fhak12yha6miwb84085722v5ipk8lagijhc6af291kp70i9"; depends=[gdata stringr]; }; rsvd = derive2 { name="rsvd"; version="1.0.5"; sha256="07p2hjmpcwcsang8z9sjkpy94rydcin7m3hyvcgzgm5cd6w8c1p4"; depends=[Matrix]; }; + rsvddpd = derive2 { name="rsvddpd"; version="1.0.0"; sha256="0p2cpv3ipkvl27zhncpcyxp6lqw54ncdnxyk659qc24l0fqbw7dc"; depends=[MASS matrixStats Rcpp RcppArmadillo]; }; rsvg = derive2 { name="rsvg"; version="2.1.2"; sha256="10p6aps2rsvhf4xgngl9x20cf2wqbzhlpjds8biyihvj58c1q8nn"; depends=[]; }; - rsyncrosim = derive2 { name="rsyncrosim"; version="1.2.9"; sha256="0hjlgqd4fzsbhh1vrg35kd536d721svg6856npb26zsyvza6nyaj"; depends=[DBI raster RSQLite]; }; + rsyncrosim = derive2 { name="rsyncrosim"; version="1.3.2"; sha256="1f66mx4s765jsmvgvff3sizp3xmqhc4ipj0j70igyj381xxa937x"; depends=[DBI gtools lifecycle raster RSQLite]; }; rsyntax = derive2 { name="rsyntax"; version="0.1.2"; sha256="1a0249bzl47vwqivi7rdwfq7b2wx7pxpyps49q0ldn6a0askhhij"; depends=[base64enc data_table digest igraph magrittr png rlang stringi tidyselect tokenbrowser]; }; rsyslog = derive2 { name="rsyslog"; version="1.0.2"; sha256="0sc9jiscabr72fsx1wwjvq44casvhdsinj77wrcp017a4f9i0k5b"; depends=[]; }; rt = derive2 { name="rt"; version="1.1.0"; sha256="1wwx3pjwsqvar25cddc4090vcngir81a7n9yiv4q8i47h58xmc2g"; depends=[httr stringr]; }; @@ -15495,9 +15530,9 @@ in with self; { rtrim = derive2 { name="rtrim"; version="2.1.1"; sha256="1l2ijkm4p3nd7n4q1b4y9pdyafgyf76zizpi7hhzw1rr9zkxhff2"; depends=[]; }; rts = derive2 { name="rts"; version="1.1-3"; sha256="1lnfqmi49lmk7zhmgyl1z9hlfxh3gg373wj81x7vw9964564r4wg"; depends=[raster RCurl sp terra xts zoo]; }; rtsVis = derive2 { name="rtsVis"; version="0.0.3"; sha256="0j48p4cdkd3dwc5bxv8kmmqj38yaq4rz0wp47kx21msbajcw5m3m"; depends=[assertthat dplyr forcats ggplot2 magrittr moveVis pbapply raster RStoolbox sf sp tidyr]; }; - rtsdata = derive2 { name="rtsdata"; version="0.1.2"; sha256="0h0zk8vy21xh0n6pcipgml0b0f4pfi94q6hjdqkxd3xsa6a5scra"; depends=[alfred anytime brotli curl data_table mongolite Quandl quantmod xts zoo]; }; + rtsdata = derive2 { name="rtsdata"; version="0.1.3"; sha256="0ylw8m0wf6jvjl3zirns6qk71lwsrljnvz5dn1ngvp7c1x7y1wn9"; depends=[anytime brotli curl data_table mongolite Quandl quantmod xts zoo]; }; rtson = derive2 { name="rtson"; version="1.3"; sha256="1gwvk7nmq9bz90jy1zh7lhr735iw804pmwxykdpaigcsnxk7zx03"; depends=[R6]; }; - rtsplot = derive2 { name="rtsplot"; version="0.1.3"; sha256="0va6ir0bmpnw4ibvfh2j4z01flg72dpxn7q10sdsdj304hb0g4in"; depends=[quantmod RColorBrewer xts zoo]; }; + rtsplot = derive2 { name="rtsplot"; version="0.1.4"; sha256="1zgndf2g39zp67b0ibcy9ib33r0mb7pwmqpy92gb31a0hvckzdj7"; depends=[quantmod RColorBrewer xts zoo]; }; rtweet = derive2 { name="rtweet"; version="0.7.0"; sha256="05pbvxm2vmf6935b9s6663k3aifnkr3m52wh2jvnplmrwyrfpn9n"; depends=[httpuv httr jsonlite magrittr progress Rcpp tibble]; }; rtype = derive2 { name="rtype"; version="0.1-1"; sha256="0wjf359w7gb1nrhbxknzg7qdys0hdn6alv07rd9wm6zynnn1vwxy"; depends=[]; }; rtypeform = derive2 { name="rtypeform"; version="2.1.0"; sha256="02qnsw2nd3fnyr0gbmx3690b78k899dxf04g4bqpjlg9y38g1cnr"; depends=[assertthat dplyr glue httr jsonlite lubridate purrr rlang tibble tidyr]; }; @@ -15518,7 +15553,7 @@ in with self; { runstats = derive2 { name="runstats"; version="1.1.0"; sha256="0n9348af60j8a2mwgbafabspb4nm45ry92zlzmynja06zyx8lb2d"; depends=[fftwtools]; }; rusda = derive2 { name="rusda"; version="1.0.8"; sha256="0xx72jjf1pyixwpnvvgx5n2vc5gl46bam1caav043iqki68wb338"; depends=[foreach httr plyr RCurl stringr taxize testthat XML]; }; rusk = derive2 { name="rusk"; version="0.1.1"; sha256="0a6vbcnfzlfq9fmibiy0cwcfix65qhxq4f7wc7d53riga82s00lk"; depends=[dplyr ggforce ggplot2 reshape2 shiny tidyr]; }; - rust = derive2 { name="rust"; version="1.3.12"; sha256="06brscgys7256irp2dp731dafjv7m1f5i9w03fix9m1x9d4rc9cf"; depends=[Rcpp RcppArmadillo]; }; + rust = derive2 { name="rust"; version="1.3.13"; sha256="0j17jcg16vdqzga8szg3fhkir9ls7mbbf1zqfp4nymwy3mkmvhm5"; depends=[Rcpp RcppArmadillo]; }; ruta = derive2 { name="ruta"; version="1.1.0"; sha256="1qr2ryz55h2j3wlwg0535lhmk2ydm0idfxl07rlfxq1pi32cjms1"; depends=[keras purrr R_utils]; }; rutifier = derive2 { name="rutifier"; version="1.0.4"; sha256="045pr8apd105azs1glpwqrbamglqddxfpml9yrfrlaivz3fjd9l8"; depends=[R_utils]; }; ruv = derive2 { name="ruv"; version="0.9.7.1"; sha256="1n4q9mrp9f644spbns6bbnzmlabrg90hwkdfg3hnm3rxp9b4xid0"; depends=[ggplot2 gridExtra scales]; }; @@ -15526,7 +15561,7 @@ in with self; { rvHPDT = derive2 { name="rvHPDT"; version="3.0"; sha256="05nrfnyvb8ar7k2bmn227rn20w1yzkp1smwi4sysc00hyjrlyg8s"; depends=[gtools]; }; rvTDT = derive2 { name="rvTDT"; version="1.0"; sha256="09c2fbqnlwkhaxfmgpsdprl0bb447ajk9xl7qdlda201fvxkdc8v"; depends=[CompQuadForm]; }; rvalues = derive2 { name="rvalues"; version="0.7.1"; sha256="0vgizlm5g6mnzvwsprgg0wj0k2y3nc8zn1bqdaw58py92mqpvj1d"; depends=[]; }; - rvcheck = derive2 { name="rvcheck"; version="0.2.0"; sha256="09gx29q882vh4q1qbb8z8lc3pgmpn7bk8skzcm85mrf3x3vgvkpa"; depends=[BiocManager yulab_utils]; }; + rvcheck = derive2 { name="rvcheck"; version="0.2.1"; sha256="09khjklvzbafd7r55496by01a9g3y291d87hpy43w44dmz9fzn9a"; depends=[BiocManager yulab_utils]; }; rversions = derive2 { name="rversions"; version="2.1.1"; sha256="1cbwwbz8lqx2n33xr4q904whvld22s63rpyy1nn93395l7ssrakr"; depends=[curl xml2]; }; rvertnet = derive2 { name="rvertnet"; version="0.8.2"; sha256="09lja7dd1rdln7cpd4rn4l3fynm223as3k295dcwf4x26gna7s9d"; depends=[crul dplyr ggplot2 jsonlite maps tibble]; }; rvest = derive2 { name="rvest"; version="1.0.2"; sha256="1905vxgnj3q09l1wf6rwxpbpydznp06nbkrclnc05j2415z4gfw9"; depends=[httr lifecycle magrittr rlang selectr tibble xml2]; }; @@ -15553,6 +15588,7 @@ in with self; { ryandexdirect = derive2 { name="ryandexdirect"; version="3.6.0"; sha256="0f1z8gp1pxfqx694alj435ihzxvd9ban04b1clzipgdq9la1hza8"; depends=[bitops data_table dplyr httr jsonlite magrittr purrr readr stringr tidyr xml2]; }; rym = derive2 { name="rym"; version="1.0.5"; sha256="0brh8hm3x21swypnzj3bbbf7njgarsj4804fp5lcqlr4nadzx26y"; depends=[httr purrr stringr]; }; ryouready = derive2 { name="ryouready"; version="0.4"; sha256="1d9z3paxcrkwsgn5g83x57jwz2iqarks30x0bwg48i5ispw6xbr3"; depends=[car ggplot2 stringr]; }; + rytstat = derive2 { name="rytstat"; version="0.1.0"; sha256="1wwqhdcb2l8sbn9xps4my0haqkg6d9dky49p0pm9q6sakgy53ayx"; depends=[cli dplyr gargle httr pbapply rlang snakecase stringr tidyr withr]; }; rzentra = derive2 { name="rzentra"; version="0.1.0"; sha256="1knp1616ck64wgf3r80s1nywdnljc1r9fjvgg531j0fxir04aqkl"; depends=[data_table dplyr httr jsonlite lubridate magrittr purrr]; }; rzmq = derive2 { name="rzmq"; version="0.9.8"; sha256="0lqwxi9ckydvrmmkwy3mhqd28gyajijznbbb4j23mnmi0aspwnl1"; depends=[]; }; s2 = derive2 { name="s2"; version="1.0.7"; sha256="0gwydn6wdl675ydkcckrci6ylcx30qn8nfhmrp4qx4r9mv3c2410"; depends=[Rcpp wk]; }; @@ -15604,10 +15640,11 @@ in with self; { salso = derive2 { name="salso"; version="0.2.23"; sha256="19b3g37nm3nj255vpjgbzmwvyzybb8a3wff9qax6nw5fx9hb6zas"; depends=[]; }; salty = derive2 { name="salty"; version="0.1.0"; sha256="1dxq62yrkv416fy09l03slc7ci6mnwiyvjlsxhbqnj8yjy3kbhr6"; depends=[assertthat purrr stringr]; }; sambia = derive2 { name="sambia"; version="0.1.0"; sha256="15yz5lrjav5bs8m52crg3l43xmi4gf7wydji76p181ssyg43z2ln"; depends=[dplyr e1071 FNN mvtnorm pROC ranger smotefamily]; }; - samc = derive2 { name="samc"; version="1.4.1"; sha256="0g6fqwyfjsb3pdws9vb2mnqv2967spiqzwin6bw94az1shmvpdnc"; depends=[gdistance Matrix raster Rcpp RcppEigen]; }; + samc = derive2 { name="samc"; version="2.0.0"; sha256="1xpk0ivcdydy1vsz1qxjx0p6sarz0ry8nh8wa1ca7nvl6pkq5r7j"; depends=[gdistance Matrix raster Rcpp RcppEigen RcppThread]; }; samon = derive2 { name="samon"; version="4.0.1"; sha256="1zhnv7kdpd2zhp6il5x56v4yh5703n1nsnkrysygns4i7xhvcf6z"; depends=[]; }; sampSurf = derive2 { name="sampSurf"; version="0.7-6"; sha256="1f2ndfrxz0v0di9sb17rxs3iik2qw2nj1dn7apl55b2d07nsmpk3"; depends=[boot lattice latticeExtra raster rasterVis sp]; }; sampleSelection = derive2 { name="sampleSelection"; version="1.2-12"; sha256="1am1w8c24f27gcdmrk3b4wp9j5awghnw9s9lphnkm10pl31881dy"; depends=[Formula maxLik miscTools mvtnorm systemfit VGAM]; }; + sampleVADIR = derive2 { name="sampleVADIR"; version="1.0.0"; sha256="1fxqjbczw5wpdx19rmlc2jwsk8nlkbbpdagn9z1xkfba3xli9f1w"; depends=[lubridate splitstackshape]; }; sampler = derive2 { name="sampler"; version="0.2.4"; sha256="12jjx3ci1yss8dj64bjdmz73cyjfkwb7b9zk4zm48lqv78k6wlv7"; depends=[dplyr purrr reshape tidyr]; }; samplesize = derive2 { name="samplesize"; version="0.2-4"; sha256="0n6z7jmf665lbj3g1mjy87a9fh53z85546bhrkmkgsysb0r9q6iq"; depends=[]; }; samplesize4surveys = derive2 { name="samplesize4surveys"; version="4.1.1"; sha256="0v332xb4vkkjr3nwf3231aqgzsj7mqld9ffkla1nj52lxay2ji75"; depends=[dplyr magrittr TeachingSampling timeDate]; }; @@ -15683,7 +15720,7 @@ in with self; { scRNAtools = derive2 { name="scRNAtools"; version="1.0"; sha256="0x0lniqhq6q87y08kkkyvmk1g5b8i73hm3h86ba8rcv0v0n7ap9a"; depends=[ALL ConsensusClusterPlus corrplot edgeR foreach ggplot2 ggthemes Hmisc igraph lattice limma PerformanceAnalytics plyr reshape2 Rmisc Rtsne scatterplot3d survival TPEA]; }; scSorter = derive2 { name="scSorter"; version="0.0.2"; sha256="04gnw9i4j8sk3fjh74idk0d6wflw17z1c3afz6wir5pc4y3lzn2j"; depends=[]; }; scTenifoldKnk = derive2 { name="scTenifoldKnk"; version="1.0.1"; sha256="0d6gcr0qrm7mc36n2lihl7bq9vj40dblqswznbwvxichv8kc5svz"; depends=[MASS Matrix pbapply RSpectra scTenifoldNet]; }; - scTenifoldNet = derive2 { name="scTenifoldNet"; version="1.2.4"; sha256="1gnikgfaf74d4sjdjjl34lwy9lcws4haff6x59x8bnjj7k7q219q"; depends=[MASS Matrix pbapply RSpectra]; }; + scTenifoldNet = derive2 { name="scTenifoldNet"; version="1.3"; sha256="02ijwi487pfwhgdmpals2snx5dvdnkbkyp9g1yldw12a9v8rz8q7"; depends=[MASS Matrix pbapply RhpcBLASctl RSpectra]; }; scUtils = derive2 { name="scUtils"; version="0.1.0"; sha256="09c4vwrjj4r0nfcwb8q0a243m0v5wa3qisdlcy7ik58gyxp02zv8"; depends=[assertthat dplyr ggplot2 Matrix scales viridis viridisLite]; }; scaffolder = derive2 { name="scaffolder"; version="0.0.1"; sha256="1va1mlhqv5qn0hm81ypdir9llr68222qxjp3jink69zpaskfbdib"; depends=[reticulate]; }; scagnostics = derive2 { name="scagnostics"; version="0.2-4.1"; sha256="1azg1xlid63l9mcyns9yyl3a3hykbl0sl0h5jhyvzjzahfyanq53"; depends=[rJava]; }; @@ -15698,6 +15735,7 @@ in with self; { scar = derive2 { name="scar"; version="0.2-1"; sha256="04x42414qxrz8c7xrnmpr00r46png2jy5giwicdx6gx8jwrkzhzs"; depends=[]; }; scatr = derive2 { name="scatr"; version="1.0.1"; sha256="1c2z722i7d7qflh4mzb8kkix5i22wph98kwz2p98x2mhaml8802d"; depends=[cowplot ggplot2 ggridges ggstance jmvcore R6]; }; scatterD3 = derive2 { name="scatterD3"; version="1.0.1"; sha256="187jq1y5va5npsmpkfyi6mhgynq956590q4z8v1ibadsrcldw34m"; depends=[digest ellipse htmlwidgets]; }; + scatterPlotMatrix = derive2 { name="scatterPlotMatrix"; version="0.1.0"; sha256="1xs1rzi6j3yrj4j4yjhlj24nkxdnc4xgpwrdv9p0bzwc4gcarw1j"; depends=[htmlwidgets]; }; scattermore = derive2 { name="scattermore"; version="0.7"; sha256="18nzlprmphkvjg946h10h2qq0wbkmv2526p8di6k2xl4gccq0qpk"; depends=[ggplot2 scales]; }; scatterpie = derive2 { name="scatterpie"; version="0.1.7"; sha256="1pmspv8a7k20zyd5xvmav2k9mnjrkfhdij3rr9k504zyki8hfy1z"; depends=[ggforce ggfun ggplot2 rlang tidyr]; }; scatterplot3d = derive2 { name="scatterplot3d"; version="0.3-41"; sha256="152xqz9c70qab86mpgng049gxsg5f4fpf1m8dh93fb9v1avjd0sc"; depends=[]; }; @@ -15905,7 +15943,7 @@ in with self; { servr = derive2 { name="servr"; version="0.23"; sha256="1f1fgfgjgjsbn2krkbyw2qwkm0k4lq9p9jakg9zwyqlgpkdd34j4"; depends=[httpuv jsonlite mime xfun]; }; sesem = derive2 { name="sesem"; version="1.0.2"; sha256="0b1xzv38wpkhhlq87xrvlh45b8ksbi8bg4ar5hrf8gxa19r9rmi5"; depends=[gplots lavaan mgcv]; }; session = derive2 { name="session"; version="1.0.3"; sha256="04mcy1ac75fd33bg70c47nxqxrmqh665m9r8b1zsz5jij1sbl8q5"; depends=[]; }; - sessioninfo = derive2 { name="sessioninfo"; version="1.1.1"; sha256="0j5f3l58fynxx3v0w62vqpii7miabszgljpja36xx9s8hikh8sqn"; depends=[cli withr]; }; + sessioninfo = derive2 { name="sessioninfo"; version="1.2.0"; sha256="1pq7ihd1qxigbdj7r9y00vpi20r4jjcr8b9h33hgjfixmlwggsxd"; depends=[cli]; }; set = derive2 { name="set"; version="1.2"; sha256="0f36dp9k0nxp1amsd7ybwgbv0vxvgd1kns7cbfsbsh0kljxyplzp"; depends=[do]; }; set6 = derive2 { name="set6"; version="0.2.4"; sha256="06swz60p73a7m7rvsv1545hsr2chkk2w2hmnfwkwfz4hrbdxm709"; depends=[checkmate ooplah R6 Rcpp]; }; setRNG = derive2 { name="setRNG"; version="2013.9-1"; sha256="02198cikj769yc32v8m2qrv5c01l2fxmx61l77m5ysm0hab3j6hs"; depends=[]; }; @@ -15918,7 +15956,7 @@ in with self; { sfa = derive2 { name="sfa"; version="1.0-1"; sha256="1acqxgydf8j5csdkx0yf169x3yaa31r0ccdrqarh6vj1hacm89ad"; depends=[]; }; sfaR = derive2 { name="sfaR"; version="0.1.0"; sha256="1lgazgj6xfg0syspw6wzmd4xyczydhdgghpaf9kgrqvqfkaqcf8p"; depends=[dplyr emdbook fBasics Formula gsl marqLevAlg MASS maxLik moments nleqslv numDeriv primes qrng randtoolbox trustOptim ucminf]; }; sfadv = derive2 { name="sfadv"; version="1.0.1"; sha256="1rfpm6km5pckwhqgpvidm6qsj5sjdaqqj5b0sgvpslivfa4c80cr"; depends=[gmm minpack_lm]; }; - sfarrow = derive2 { name="sfarrow"; version="0.4.0"; sha256="0c03dq6m2yc0dfj2kmqlxdxjv94fkhr7v4dlaw1jxha0fpd1p1l6"; depends=[arrow dplyr jsonlite sf]; }; + sfarrow = derive2 { name="sfarrow"; version="0.4.1"; sha256="1hslyha1w5x1ncawbwbx792cqa3031v26g9lssmb0n1hihzvfp8g"; depends=[arrow dplyr jsonlite sf]; }; sfc = derive2 { name="sfc"; version="0.1.0"; sha256="0cm4mfcfd9bhf2j5fppsihzrfipnldb6q3xradd88z9pwgrkfx2a"; depends=[dplyr sna tidyr triangle zoo]; }; sfcr = derive2 { name="sfcr"; version="0.2.1"; sha256="05ip1z6rh0k7az0y7nwp9c6rv1s53i0i698yfhx46lfnhzz87anf"; depends=[dplyr expm forcats igraph kableExtra magrittr purrr Rcpp RcppArmadillo Rdpack rlang rootSolve stringr tibble tidyr tidyselect vctrs]; }; sfdct = derive2 { name="sfdct"; version="0.1.0"; sha256="0p3ipp6x8vnsi94078n098yk9wglnawvzh19imcgk2c1l5lazwgf"; depends=[dplyr RTriangle sf sp tibble]; }; @@ -15940,6 +15978,7 @@ in with self; { sglr = derive2 { name="sglr"; version="0.7"; sha256="11gjbvq51xq7xbmpziyzwqfzf4avyxj2wpiz0kp4vfdj3v7p4fp9"; depends=[ggplot2 shiny]; }; sgmcmc = derive2 { name="sgmcmc"; version="0.2.5"; sha256="0lq79c7i6bklh8c63wx3k6h9mk8s1abbr0hc41drcm96bbbg0aal"; depends=[reticulate tensorflow]; }; sgmodel = derive2 { name="sgmodel"; version="0.1.1"; sha256="1i13vp91i8s61ylsyg0iij1sfclwif7v91slr2srl8ddz6lm23nx"; depends=[ggplot2 ramify Rtauchen]; }; + sgo = derive2 { name="sgo"; version="0.9.0"; sha256="0rpxsc59skf1zphnvin5hjmz858d47xl3sq0z83zkka9h4fiwsp6"; depends=[]; }; sgof = derive2 { name="sgof"; version="2.3.2"; sha256="020kc6h9iw4qhb9pdi7wk8vcy54dp10x0z3nlq3gwwbj1l9izc44"; depends=[poibin]; }; sgpv = derive2 { name="sgpv"; version="1.1.0"; sha256="0w0slnnw239a34c0h7xr76c4m0rfwl0hq61g9n12vzxd6lfh3gqz"; depends=[]; }; sgr = derive2 { name="sgr"; version="1.3"; sha256="0zxmrbv3fyb686hcgfy2w1w2jffxf41ab8yc90dsgf931s9c55wn"; depends=[MASS]; }; @@ -15973,7 +16012,7 @@ in with self; { shiny_info = derive2 { name="shiny.info"; version="0.2.0"; sha256="162wvb02z5h1y7xgsyl6wv88zlfmbm1jlnz48f56fyybs54baw41"; depends=[git2r glue shiny]; }; shiny_pwa = derive2 { name="shiny.pwa"; version="0.2.1"; sha256="120wqqy7fh7nm2bib3dq02a92jb3lykkl7qayiw6bnax8sdr18yw"; depends=[htmltools readr shiny urltools]; }; shiny_react = derive2 { name="shiny.react"; version="0.2.3"; sha256="19k1rvq47s56cipxqbalgzmhwdxw3ic5bd9qqnvsw75ynbhpa959"; depends=[glue htmltools jsonlite logger rlang shiny]; }; - shiny_reglog = derive2 { name="shiny.reglog"; version="0.2.0.2"; sha256="09zj7qivfb34bqghj3qa0ksw3k8bpd01bzs99rvds746gc08njj4"; depends=[DBI dbplyr dplyr googlesheets4 lubridate R6 RSQLite scrypt shiny]; }; + shiny_reglog = derive2 { name="shiny.reglog"; version="0.4.1"; sha256="1azhcz2ffrc82f9yfqfivb9m2alanl4wx1i8q8pyympqw09gg5zy"; depends=[DBI dplyr googlesheets4 lubridate R6 RSQLite scrypt shiny]; }; shiny_router = derive2 { name="shiny.router"; version="0.2.2"; sha256="1jxk1hxi42kyi5dahszhl9nzppa99svk1vhwf2d15apfrg2d6ivc"; depends=[htmltools magrittr shiny]; }; shiny_semantic = derive2 { name="shiny.semantic"; version="0.4.2"; sha256="0ndjp8c3c8kci8rzhj4bg1zpgwzcilgbjplx0sr2hii87lpi0v2j"; depends=[glue htmltools htmlwidgets jsonlite magrittr purrr R6 shiny]; }; shiny_worker = derive2 { name="shiny.worker"; version="0.0.1"; sha256="1l30dx46s3q1x9nd42r6dracd3lqkjk80r9jyjqy8lmdsq48300i"; depends=[future R6 shiny]; }; @@ -15986,6 +16025,7 @@ in with self; { shinyEffects = derive2 { name="shinyEffects"; version="0.2.0"; sha256="1ajar09hmrk7vcw89wkgvkz2yl0cfnkz915b57w1lmbvpxzgsq3i"; depends=[htmltools shiny]; }; shinyFeedback = derive2 { name="shinyFeedback"; version="0.4.0"; sha256="1xfznq2d4wkk0b0y4k25rwg4d3bhn3gxlkf3chfqk44f4rgril11"; depends=[fontawesome htmltools jsonlite shiny]; }; shinyFiles = derive2 { name="shinyFiles"; version="0.9.0"; sha256="0rsijlx16vd74r7bd8s9zipy71kgpw19v9s85kxj5bmwc6njmbai"; depends=[fs htmltools jsonlite shiny tibble]; }; + shinyGovstyle = derive2 { name="shinyGovstyle"; version="0.0.6"; sha256="0q3yjkb7gnf15l2bh5wp1y1z6rn6apxd731wr8b82qbsdm68q5sm"; depends=[htmltools jsonlite shiny shinyjs]; }; shinyHeatmaply = derive2 { name="shinyHeatmaply"; version="0.2.0"; sha256="1n7c7dvvb9kqay2phcf0bkwi990x1cjl7js6pq05xx7rli5bc5h4"; depends=[dplyr heatmaply htmltools plotly readxl rmarkdown shiny xtable]; }; shinyIRT = derive2 { name="shinyIRT"; version="0.1"; sha256="01x7nhjs1dx2ldwznhbavc5vzqhgkn73xg395vlf2hgzbxa2ydvj"; depends=[irtoys magrittr mirt psych readxl shiny shinycssloaders shinydashboard]; }; shinyKGode = derive2 { name="shinyKGode"; version="1.0.5"; sha256="004zwz4kqfijzvvwkq8v1gi25w1wrdlg8230g93w36gbi6cl2vk1"; depends=[ggplot2 gridExtra KGode mvtnorm pracma pspline reshape2 shiny shinyjs XML]; }; @@ -16038,6 +16078,7 @@ in with self; { shinypanel = derive2 { name="shinypanel"; version="0.1.4"; sha256="0hdfpjfhyqj7ym3bwg5xmhnawl98q7mfl2wj950ysajqi88l91pr"; depends=[htmltools jsonlite shiny shinyBS shinyjs]; }; shinypanels = derive2 { name="shinypanels"; version="0.5.0"; sha256="1rslz9wl3gx11dm6il77j4k5swxvcfy5mf0zffbs4zk8xjgpzzj6"; depends=[glue htmltools shiny shinyjs]; }; shinypivottabler = derive2 { name="shinypivottabler"; version="1.0"; sha256="04mdzd0j9y1w0iifpgd870haj5b9q8sdmkj4lws0svhkli3ym097"; depends=[colourpicker htmltools openxlsx pivottabler shiny]; }; + shinyr = derive2 { name="shinyr"; version="0.3.0"; sha256="1r4xpb5x0711jbh4v8wkfhgg3s7l1sxqr6i90wsh0k0q3501fs2i"; depends=[caret corrplot dplyr e1071 knitr nnet plotly randomForest RColorBrewer shiny shinydashboard tm wordcloud]; }; shinyrecap = derive2 { name="shinyrecap"; version="0.1.0"; sha256="1mic7azxz2in67g3a2ir550w8psh6kc75p6hja6m62a0yy7j2n92"; depends=[CARE1 coda conting dga future ggplot2 ipc LCMCR promises Rcapture reshape shiny shinycssloaders testthat]; }; shinyrecipes = derive2 { name="shinyrecipes"; version="0.1.0"; sha256="1b4l27qsl1lpssh3jv1pqmw2mq8hanfj0m269yp5618nd5nxd2ck"; depends=[dplyr DT esquisse miniUI purrr recipes rstudioapi shiny shinyglide shinyWidgets sortable stringr tidyr]; }; shinyreforms = derive2 { name="shinyreforms"; version="0.0.1"; sha256="1g1blc57c6zkca0m52bqkw8jwgpplabns07x1cwkk46dmv6sgqci"; depends=[htmltools R6 shiny]; }; @@ -16062,7 +16103,7 @@ in with self; { shp2graph = derive2 { name="shp2graph"; version="0-5"; sha256="1l9mg98hkb0bvr5dzd2p26g8mw5hqjxrym2gmbm10kyapvccfk56"; depends=[igraph maptools sp]; }; shrink = derive2 { name="shrink"; version="1.2.1"; sha256="0pd967wsys8fd7gyvr9y08km118yamfk5c1a1i2k8nr2ifpqmy0w"; depends=[MASS mfp rms survival]; }; shrinkDSM = derive2 { name="shrinkDSM"; version="0.1.0"; sha256="01yvs1shsp7npfm9w1caprb1x8w42zlzswc2fk9y6q340i51kfzm"; depends=[coda Rcpp RcppArmadillo RcppProgress shrinkTVP stochvol]; }; - shrinkTVP = derive2 { name="shrinkTVP"; version="2.0.2"; sha256="0bzjr1mgz75k81ni149wg2mcrdvig9h4mcm3n2f7l98c3rizvk24"; depends=[coda GIGrvg Rcpp RcppArmadillo RcppProgress stochvol zoo]; }; + shrinkTVP = derive2 { name="shrinkTVP"; version="2.0.3"; sha256="130x6rpvrng25l6mx3fskcvv9jyjzbvl6da35bvsw2j88qd3fra2"; depends=[coda GIGrvg Rcpp RcppArmadillo RcppProgress stochvol zoo]; }; shuffle = derive2 { name="shuffle"; version="1.0.1"; sha256="0aqb11h340picx7z2jg3k46l3pr6fkknlpyzc0z89hhrc90pss48"; depends=[]; }; shuffleCI = derive2 { name="shuffleCI"; version="0.1.0"; sha256="1n9k28m1fcnw1my9a7v0gy9waygd48lab45vj9k2wwijbc325zai"; depends=[plotrix]; }; shutterplot = derive2 { name="shutterplot"; version="0.1.0"; sha256="129jv20m0dinb07lwiz9fxv4z7sxshcmjab2g0p5vrv8jlp9a0yv"; depends=[]; }; @@ -16084,7 +16125,7 @@ in with self; { sigclust = derive2 { name="sigclust"; version="1.1.0"; sha256="0151v7lr4n4yyn93j0s06gzc9jh9xhdgvfw6kvpfy24jl6wdii7g"; depends=[]; }; sigmaNet = derive2 { name="sigmaNet"; version="1.1.0"; sha256="1i0xikwad9kiyrqxi1klkc4h4hyqfkxr388sw4mrx9pswfpbv3xr"; depends=[htmlwidgets igraph jsonlite RColorBrewer]; }; sigmajs = derive2 { name="sigmajs"; version="0.1.5"; sha256="1d26llpgnj687b8rwgbyhw88zakp334n4a9gabf72qwrg4awm1v5"; depends=[crosstalk dplyr htmltools htmlwidgets igraph jsonlite magrittr purrr scales shiny]; }; - sigminer = derive2 { name="sigminer"; version="2.1.0"; sha256="16vd0ian51ny0yaa6v36klalr5grva368g26cn4y8ddicgrj2rhv"; depends=[cli cowplot data_table dplyr furrr future ggplot2 ggpubr maftools magrittr NMF purrr Rcpp rlang tidyr]; }; + sigminer = derive2 { name="sigminer"; version="2.1.1"; sha256="1fk2z6ry7agbwd8vjc3k9lgsv7qr2m75q9c02cy4742yflcayvsz"; depends=[cli cowplot data_table dplyr furrr future ggplot2 ggpubr maftools magrittr NMF purrr Rcpp rlang tidyr]; }; sigmoid = derive2 { name="sigmoid"; version="0.3.0"; sha256="1sa6nmip3fizdk3r47pvx0h3qldn267arpmid0wa1pb7k5j2g682"; depends=[]; }; signal = derive2 { name="signal"; version="0.7-7"; sha256="0qaf39vfmhn3d0bdjqd805ayfkaj48dkmf5dqd47bpk7dp21b837"; depends=[MASS]; }; signalHsmm = derive2 { name="signalHsmm"; version="1.5"; sha256="1d4v6cbvcbi8pb5zmn58s01h3jb0kv7yr7qvcnx4p2v82knvhik7"; depends=[Rcpp seqinr shiny]; }; @@ -16142,6 +16183,7 @@ in with self; { simplecolors = derive2 { name="simplecolors"; version="0.1.1"; sha256="1m0lrvkjqjqq7kynjl8j1cn7kqzfjx6gzgjpjk1gvar2g4ip0a8h"; depends=[colorspace dplyr forcats ggplot2 magrittr stringr]; }; simplegraph = derive2 { name="simplegraph"; version="1.0.0"; sha256="1gcpbljp1fgaprxnmq23izf1h2x3p5dnxlylwqsnlcj50bvm46gq"; depends=[]; }; simplegraphdb = derive2 { name="simplegraphdb"; version="2021.03.10"; sha256="0573hrv23nimmf3d8dgdynii79h84a3mfr4xxk3cggxhsxpfmb2i"; depends=[DBI rjson RSQLite]; }; + simplermarkdown = derive2 { name="simplermarkdown"; version="0.0.3"; sha256="1670x6fxqgdz471n12b9smfqrfpz282vcax1jsssficgw748lyw4"; depends=[rjson]; }; simplevis = derive2 { name="simplevis"; version="4.6.0"; sha256="0mfcfin3hq4aai0mc6drmw9asd02xc74pbvyvy1yr3fpf9888nsd"; depends=[dplyr DT forcats ggplot2 htmltools janitor kimisc leaflet leaflet_extras leafpop lubridate magrittr plotly purrr readr rlang scales sf shiny shinycssloaders snakecase stringr tibble tidyr tidyselect viridis]; }; simplexreg = derive2 { name="simplexreg"; version="1.3"; sha256="1zkh00xbddhgz0qn0a5pj12n0hpx4f5kihpfj71x92pmxpzglcxh"; depends=[Formula plotrix]; }; simplextree = derive2 { name="simplextree"; version="1.0.1"; sha256="18jvzcz4fdsi17j7qdqpjvx6zygvlcvpziikb8qxskaib5180l08"; depends=[magrittr Rcpp]; }; @@ -16207,6 +16249,7 @@ in with self; { sknifedatar = derive2 { name="sknifedatar"; version="0.1.2"; sha256="0zi9anrxg9zkgxlzlfyry5i5zlj3fs8580mp6xckkl096dry9ih0"; depends=[cli dplyr knitr magrittr modeltime parsnip purrr rlang rsample tibble tidyr tune]; }; skpr = derive2 { name="skpr"; version="1.0.0"; sha256="1p8wwan29jgc4p9pk0x19wwqnvy012bhci6s49za1wzvzxh6w7ia"; depends=[car doParallel doRNG foreach future gt iterators lazyeval lme4 lmerTest magrittr progress promises Rcpp RcppEigen rintrojs scales shiny shinyjs shinythemes survival viridis]; }; skynet = derive2 { name="skynet"; version="1.4.0"; sha256="1ir8sw99fvdy8zp7ncgdnggr8hv1ph21kvdi9my42vlsh2fqi5ja"; depends=[data_table dplyr geosphere ggplot2 ggrepel httr igraph leaflet maps stringr]; }; + skyscapeR = derive2 { name="skyscapeR"; version="1.0.0"; sha256="1x3s003wdmnf0h1k3gl6cvd35g516y7v2yzahr3wxk2np832kjli"; depends=[doParallel foreach httr MESS numDeriv oce plotrix png RColorBrewer rootSolve swephR zoo]; }; slackr = derive2 { name="slackr"; version="3.2.0"; sha256="10klljhkycnyqkzq73gj71c2phdqx9l3lb2jzancc59x21wjqn3b"; depends=[cachem dplyr ggplot2 httr jsonlite magrittr memoise rlang tibble withr]; }; slam = derive2 { name="slam"; version="0.1-48"; sha256="1ppsvkph4v1dffxgp12a4wnr9arj7pkmh4qv0and3f6nbz9k42qa"; depends=[]; }; slanter = derive2 { name="slanter"; version="0.2-0"; sha256="024dkman0r5qzc215gw0ds932vdaz8krrhv64fjw9pni37ixc3mf"; depends=[Matrix pheatmap pracma]; }; @@ -16267,13 +16310,14 @@ in with self; { smoothSurv = derive2 { name="smoothSurv"; version="2.3"; sha256="0rxgps184hl49g8gpa7hjvdl2i01qkghmvlv8blwwr9rfk19aq1s"; depends=[survival]; }; smoothedLasso = derive2 { name="smoothedLasso"; version="1.6"; sha256="0007i40a12jgavgd95fbpiil1s331qd05ww6v19l49lbnlk3ldxg"; depends=[Matrix Rdpack]; }; smoother = derive2 { name="smoother"; version="1.1"; sha256="0nqr1bvlr5bnasqg74zmknjjl4x28kla9h5cxpga3kq5z215pdci"; depends=[TTR]; }; + smoothic = derive2 { name="smoothic"; version="0.1.0"; sha256="11bi3xyw1ia1p8hqfz4rcp1qxz0lkpwl1yc8m12819mgsliswgn8"; depends=[]; }; smoothie = derive2 { name="smoothie"; version="1.0-3"; sha256="1ari4av4vsydaxg56vsfifc50kxsqy8xlxl7by32capc6pcjwvq8"; depends=[]; }; smoothmest = derive2 { name="smoothmest"; version="0.1-2"; sha256="14cri1b6ha8w4h8m26b3d7qip211wfv1sywgdxw3a6vqgc65hmk5"; depends=[MASS]; }; smoothr = derive2 { name="smoothr"; version="0.2.2"; sha256="1z1ha67b4fw6mkmvs2g80mc1id215rkzvz7bpzk1jdp6fibqpr2b"; depends=[raster rgeos sf units]; }; smoothtail = derive2 { name="smoothtail"; version="2.0.5"; sha256="1sqkwniz9m03k23nba9ndmdm0g03mdshzm8risr6wz98jcqjilrk"; depends=[logcondens]; }; smoots = derive2 { name="smoots"; version="1.1.3"; sha256="09a3f8prplzl7bsmfxbgni2bx4z3xsmx9sdr7jzmx3janlhlf6c5"; depends=[future future_apply progress progressr Rcpp RcppArmadillo]; }; smotefamily = derive2 { name="smotefamily"; version="1.3.1"; sha256="062yps71bqnyff1hzqb7yvigvqg2lnc24r9gfp8m3zhvmyprk3cp"; depends=[dbscan FNN igraph]; }; - smovie = derive2 { name="smovie"; version="1.1.3"; sha256="0gani6ywckvp4p72drl87vlvwcszzn5n71iqrwdgnyyr6r69ax7b"; depends=[rpanel]; }; + smovie = derive2 { name="smovie"; version="1.1.4"; sha256="12l24ilkgpsxq4gs4yp8g2cdws6az0x06s5yzi1qqkym8n86a4f3"; depends=[rpanel]; }; smpic = derive2 { name="smpic"; version="0.1.0"; sha256="0ff2146gjcrc6nvrbf4779jh076abhb843zzlk2zvqir13qfap61"; depends=[ggplot2 imager stringr]; }; sms = derive2 { name="sms"; version="2.3.1"; sha256="0vr5jy8bxbczaqr9kg0fnanxhv9nj51yzgacrb63k33cs85p981m"; depends=[doParallel foreach iterators]; }; smss = derive2 { name="smss"; version="1.0-2"; sha256="04lgfdcvnzpnpplyl62fy7slyiy8wkqpjjrzmclgqis3c9zkkncp"; depends=[]; }; @@ -16290,7 +16334,7 @@ in with self; { snht = derive2 { name="snht"; version="1.0.5"; sha256="0k8w1118b2qrf5zfi902gm6zf7b1mwv7py7wg57vsibh2r2ra8ah"; depends=[ggplot2 gridExtra mgcv plyr reshape2 zoo]; }; snn = derive2 { name="snn"; version="1.1"; sha256="0yywn3v1iz9xizwli3gmzprkx66b5a813mbp8hq2vsj8n4lfj8r5"; depends=[]; }; snotelr = derive2 { name="snotelr"; version="1.0.4"; sha256="0ni2hmlbxvhs9mwbf679yysd9gkj4fknfdwi7a6b32jsf0v6mg92"; depends=[httr magrittr memoise RSelenium rvest shiny wdman xml2]; }; - snow = derive2 { name="snow"; version="0.4-3"; sha256="1n3n8pva9s34fvlw32yng0x416lmbv7q1fsd0ywa4kikmxym64l5"; depends=[]; }; + snow = derive2 { name="snow"; version="0.4-4"; sha256="1j8kvf3imxijsqkdjz4i9s7qggfxqrpas46y5wz6za92y937yn44"; depends=[]; }; snowFT = derive2 { name="snowFT"; version="1.6-0"; sha256="00rq2xibzhx7441v9jg138a4fkmx28hifs4yyj3pwi8najf0df4n"; depends=[rlecuyer snow]; }; snowboot = derive2 { name="snowboot"; version="1.0.2"; sha256="0jj3p0g4rwml8vmlwj10rfisxfjlipcrpvq5z134z4j35jp6ggv3"; depends=[igraph Rcpp Rdpack]; }; snowfall = derive2 { name="snowfall"; version="1.84-6.1"; sha256="13941rlw1jsdjsndp1plzj1cq5aqravizkrqn6l25r9im7rnsi2w"; depends=[snow]; }; @@ -16310,15 +16354,16 @@ in with self; { social = derive2 { name="social"; version="1.0"; sha256="0ny81bhj80rlwwa6cgbkdz2rxz6bp0f3nvjr1sqxr4s8l8rnf4ic"; depends=[Rcpp]; }; socialh = derive2 { name="socialh"; version="0.1.0"; sha256="03ms1plsrs7lhxh4fb2kwrhayly4f53q61czzycjmbfp83fg1xmj"; depends=[data_table dplyr magrittr]; }; socialmixr = derive2 { name="socialmixr"; version="0.1.8"; sha256="0zhinhjv1ablhdyz41a1ii1s3mzqg8f2ns7xcjnlwa9fx364x5a2"; depends=[countrycode curl data_table httr jsonlite lubridate oai stringr wpp2015 XML]; }; - sociome = derive2 { name="sociome"; version="2.0.0"; sha256="1r49v4ajjv2v10478bmbjv3hnyzi9srw6q04x4gl0fnqch45hn6p"; depends=[censusapi dplyr magrittr mice psych purrr rlang stringr tidycensus tidyr]; }; + sociome = derive2 { name="sociome"; version="2.1.0"; sha256="0dh20mx3jbyy2bkrdz1w0sihdfhpfvc5p0i0x9q0azcpln51rv5k"; depends=[censusapi dplyr magrittr mice psych purrr rlang stringr tidycensus tidyr]; }; socviz = derive2 { name="socviz"; version="1.2"; sha256="1294xwy26vshmaiw3pkx3f90j8g6fv64gygv88b7lnz6fhai1nq5"; depends=[dplyr fs magrittr rlang tibble]; }; sodavis = derive2 { name="sodavis"; version="1.2"; sha256="1jf5sml51qxlpgv5b1rvyig4dm4ijw2hpnk85zf790jp22xm64jw"; depends=[MASS mvtnorm nnet]; }; - sodium = derive2 { name="sodium"; version="1.1"; sha256="1zxzi8xvxnhgcd5qrylf08nz1cdq3aslrswjas440qg63ypmbf6w"; depends=[]; }; + sodium = derive2 { name="sodium"; version="1.2.0"; sha256="0x4jb3cf1nv1spz1jc9xp8hly2b4a7nj48xr4s33jnfcpdjkmn5q"; depends=[]; }; sofa = derive2 { name="sofa"; version="0.4.0"; sha256="1w78f8pnx4vh6znpwwcy9k4j795zji4bv88mi6ihdv09ar7if7yv"; depends=[crul jsonlite mime R6]; }; softImpute = derive2 { name="softImpute"; version="1.4-1"; sha256="1v2a4d688ij5zcvkzpra9yx40xckdfnllnfnyq2450zf3n1kjk7a"; depends=[Matrix]; }; softclassval = derive2 { name="softclassval"; version="1.0-20160527"; sha256="1f5qj5sajy3dg0mgss6f9w6v5a2prcypld9jcv457bd4n4a409kr"; depends=[arrayhelpers svUnit]; }; soilDB = derive2 { name="soilDB"; version="2.6.5"; sha256="1h5zmcv8vqq05svz3wnfrg2wszlzw285s6imd32ik10laidlz4yd"; depends=[aqp curl data_table DBI plyr raster reshape2 sp xml2]; }; soilassessment = derive2 { name="soilassessment"; version="0.2.1"; sha256="14hqwxpqb19g5r7abar40kprfilzxi24mg083gypvxzs48pb6gn8"; depends=[arm caret Cubist deSolve e1071 FuzzyAHP Hmisc kernlab maptools nnet qrnn quantregForest randomForest ranger raster rgdal rpart soiltexture sp]; }; + soilhypfit = derive2 { name="soilhypfit"; version="0.1-3"; sha256="0vnm54dy0h28r4wbb3rn66cii9j0fd900q70nlriwl43gcc33q3j"; depends=[mgcv nloptr quadprog Rmpfr snowfall SoilHyP]; }; soiltexture = derive2 { name="soiltexture"; version="1.5.1"; sha256="1l9npvk910488qzd45ibc7ss557hnkb78lx1p6fs3nhl8sacgyxh"; depends=[MASS sp]; }; soilwater = derive2 { name="soilwater"; version="1.0.5"; sha256="11gal7hj73j82qx65krmzpmf0gpm41ph8hw70df46dbf4w23vvjn"; depends=[]; }; sokoban = derive2 { name="sokoban"; version="0.1.0"; sha256="07r2zv9rynvw06fpncrz3rsmkdy6z2pcvmm559bhs428kmnq2xib"; depends=[]; }; @@ -16373,7 +16418,7 @@ in with self; { spMC = derive2 { name="spMC"; version="0.3.11"; sha256="06lfc4hk5kn1f1fak0ckpnad0c5b0yxb20cnm0j0hyxpv0qbxhj1"; depends=[]; }; spMaps = derive2 { name="spMaps"; version="0.4.0"; sha256="0n9693aam7gsclfhijq7cy61l0w4mm5vf3rjaz5w0jrz77lrkprh"; depends=[raster rgeos sp]; }; spNNGP = derive2 { name="spNNGP"; version="0.1.6"; sha256="12ys92r2xpmnhy6hw8sldcz0y28gnxpwnj6sm5jc1lfyz7k1ww6f"; depends=[coda Formula RANN]; }; - spNetwork = derive2 { name="spNetwork"; version="0.2.0"; sha256="1bw6nsg27j6sh8x616fgsvjlqp3k5hjfiyh93r9504a74j0ja5fn"; depends=[BH cubature data_table future_apply ggplot2 igraph maptools progressr raster Rcpp RcppArmadillo RcppProgress Rdpack rgeos SearchTrees sp spdep]; }; + spNetwork = derive2 { name="spNetwork"; version="0.2.1"; sha256="0hmg68v5a7d1ixwj9nvh7kd948r7kspar6nd3yp02mgj495ps1z8"; depends=[BH cubature data_table future_apply ggplot2 igraph maptools progressr raster Rcpp RcppArmadillo RcppProgress Rdpack rgeos SearchTrees sp spdep]; }; spTDyn = derive2 { name="spTDyn"; version="2.0.1"; sha256="1wprn2adw4l5pkwkfzdpcr07jxgycx9kaf8w8mfv27nka5hacgqx"; depends=[coda sp spacetime spTimer]; }; spThin = derive2 { name="spThin"; version="0.2.0"; sha256="0j10j1cbbwp3baqm3b59rxlnd643mkx1mirlxpnr1ad2g7xpm69f"; depends=[fields knitr spam]; }; spTimer = derive2 { name="spTimer"; version="3.3.1"; sha256="0lf39n32ifsmbcf35h0g60xniw72mlrzvzax3k6kz5c5k1wszlba"; depends=[coda extraDistr sp spacetime]; }; @@ -16395,7 +16440,7 @@ in with self; { spamtree = derive2 { name="spamtree"; version="0.2.1"; sha256="06j0qjhdjgpbad82gq6zgp6vbh6rdpnbpnkj0836lmi1180x7fay"; depends=[dplyr FNN magrittr Rcpp RcppArmadillo rlang tibble]; }; spanel = derive2 { name="spanel"; version="0.1"; sha256="1riyvvfij277mclgik41gyi01qv0k466wyk2wbqqhlvrlj79yzsc"; depends=[]; }; spanish = derive2 { name="spanish"; version="0.4.2"; sha256="15drc11lh0qxpww50p0smi8qxfbln82bx0yd74jqf71irhk5jxyp"; depends=[magrittr xml2]; }; - spant = derive2 { name="spant"; version="1.14.0"; sha256="1l5n8f1zpw8km03i783qisg2c1mnl300qp74rrmysp8chj04w628"; depends=[abind complexplus fields foreach irlba jsonlite magrittr MASS matrixcalc minpack_lm mmand nloptr nnls numDeriv plyr pracma ptw readr RNifti RNiftyReg signal smoother stringr tibble]; }; + spant = derive2 { name="spant"; version="1.15.0"; sha256="1kr5ainz31r8fl052id8i4v9ybswp7mk5jxhh7pim9df3ndxfsi5"; depends=[abind complexplus fields foreach irlba jsonlite magrittr minpack_lm mmand nloptr numDeriv plyr pracma ptw RNifti RNiftyReg signal smoother stringr]; }; sparcl = derive2 { name="sparcl"; version="1.0.4"; sha256="138krflvfdlx4hlh90mswds51i8aw2vv00gm5lgkfsvxj4w324jg"; depends=[]; }; spark_sas7bdat = derive2 { name="spark.sas7bdat"; version="1.4"; sha256="1s1hd6hvjxnfb3w10v93pggijmm2h4rcsf7ckl34j2sw9bvv7zka"; depends=[sparklyr]; }; sparkavro = derive2 { name="sparkavro"; version="0.3.0"; sha256="0g6ac9msfbx8f8j8rj0hvlxjsn317zyam207q7i8kf0hshs1r58f"; depends=[DBI dplyr sparklyr]; }; @@ -16420,7 +16465,7 @@ in with self; { sparseLDA = derive2 { name="sparseLDA"; version="0.1-9"; sha256="1k3sw9kc40yxnfss4vrsx34qxmv8ssddyhbfjhxrdldvblhbwchb"; depends=[elasticnet MASS mda]; }; sparseLRMatrix = derive2 { name="sparseLRMatrix"; version="0.1.0"; sha256="0b1qczhzbr67k5ayj7avmibyzvfg4jc67mb2m2lvifsf9wrqlqxb"; depends=[Matrix RSpectra]; }; sparseLTSEigen = derive2 { name="sparseLTSEigen"; version="0.2.0.1"; sha256="08xhpm9hp9x9rmiys4fvh9y4z2xsdkzckzw3lq0vlzvjcaynvidq"; depends=[Rcpp RcppEigen robustHD]; }; - sparseMVN = derive2 { name="sparseMVN"; version="0.2.1.1"; sha256="0ikh1i4vid6r4sx9pdjqc5wbh4xdj966mr0b7jb1vjw18wrzad8q"; depends=[Matrix]; }; + sparseMVN = derive2 { name="sparseMVN"; version="0.2.2"; sha256="1vd97w4mrc6s9d95a43cpz90adhn2015as93j55hm5phpgj24v75"; depends=[Matrix]; }; sparseMatEst = derive2 { name="sparseMatEst"; version="1.0.0"; sha256="06y061zl6id7cfw3cqzvwykzlijmala8hj61i04mgc491ngybimv"; depends=[glasso]; }; sparseSEM = derive2 { name="sparseSEM"; version="2.5"; sha256="0ig8apsi94kvbcq3i8nzmywbdizlss7c6r9bppcyl9lxgikc3cds"; depends=[]; }; sparseSVM = derive2 { name="sparseSVM"; version="1.1-6"; sha256="0b0qiikjyyh9qfd4jl69zqnlp7adxq63mwsxvgwvyc0pv5ccg8i0"; depends=[]; }; @@ -16499,8 +16544,9 @@ in with self; { spectre = derive2 { name="spectre"; version="1.0.2"; sha256="1n5z7970pzhavdf7qhxsb7gzz8dsrwa1pwyxf8n6sxvmdbk8v2z1"; depends=[ggplot2 Rcpp RcppProgress testthat]; }; spectrolab = derive2 { name="spectrolab"; version="0.0.16"; sha256="0qfzkf8dm5r5sbadipcqvfs1965l365g9000rgl9713v9lmshmy6"; depends=[RColorBrewer shiny shinyjs]; }; sped = derive2 { name="sped"; version="0.2-1"; sha256="05igpk8szdcs6kjhpmd9dmjvqdg199pz3hi0rwkhdjglxivvjzjn"; depends=[pooh]; }; - speech = derive2 { name="speech"; version="0.1.3"; sha256="0ff66fc6pvlvwy6n7dp5jkzjbbgc43rwbnk5khq7xbq9zfpfcjgj"; depends=[dplyr lubridate magrittr pdftools purrr rvest stringr tabulizer tibble tidyr tm]; }; + speech = derive2 { name="speech"; version="0.1.4"; sha256="17j4hwfqsazakkdxdrx87dfpmdsh51mms31sm3hpnzh4j7ijcg86"; depends=[dplyr lubridate magrittr pdftools purrr rvest stringr tibble tidyr tm]; }; speedglm = derive2 { name="speedglm"; version="0.3-3"; sha256="0f37w4lj8dpcg1sfkd7cv6qpdkanmb97mnd8zih2fxzv8bpd0rfh"; depends=[MASS Matrix]; }; + speedycode = derive2 { name="speedycode"; version="0.1.0"; sha256="1bmhc7x8smjs3d880ah9h6phb3igrd95b31wyg3pgzdb6lh8xa13"; depends=[dplyr purrr stringr]; }; spef = derive2 { name="spef"; version="1.0.9"; sha256="115lmv2a21ws1mj22v1fbk72mqn3siqmw3frbg4nci96lnyr7qh6"; depends=[BB ggplot2 nleqslv plyr sm SQUAREM survival]; }; speff2trial = derive2 { name="speff2trial"; version="1.0.4"; sha256="0dj5mh2sdp6j4ijgv14hjr39rasab8g83lx1d9y50av11yhbf2pw"; depends=[leaps survival]; }; spellcheckr = derive2 { name="spellcheckr"; version="0.1.2"; sha256="09snc1ymzr4njnr3w502b84dqwjjd414higjxqi48jvh27br5k1l"; depends=[data_table dplyr stringr]; }; @@ -16584,7 +16630,7 @@ in with self; { sprtt = derive2 { name="sprtt"; version="0.1.0"; sha256="1lj4qrn8ajl9lmx9qrcxrrd187khs3afvmf2hpwmakxfn6sajm0z"; depends=[]; }; sps = derive2 { name="sps"; version="0.1.1"; sha256="1vrhdpmm1da793qvj1k4rda9ssg4k094j2vy9dxhz2zcnillqpl9"; depends=[]; }; spsComps = derive2 { name="spsComps"; version="0.3.1"; sha256="0wkbxpav823kczqqk8kmax21zpi99bx2gisnqmmqvbb7lsjdlram"; depends=[assertthat crayon glue htmltools magrittr R6 shiny shinyAce shinytoastr stringr]; }; - spsUtil = derive2 { name="spsUtil"; version="0.2.0"; sha256="1s9x4fkdc2l0wjl00wcw94xbpqnda7bdfrqdrwzkq27364dx0m35"; depends=[assertthat crayon glue httr magrittr R6 stringr]; }; + spsUtil = derive2 { name="spsUtil"; version="0.2.2"; sha256="1hhiz2bmgrvpadag1d4ljynk7mhwknaslja9hcmf665l2x3hzdl6"; depends=[assertthat crayon glue httr magrittr R6 stringr]; }; spselect = derive2 { name="spselect"; version="0.0.1"; sha256="02aiml4dh40n6yl52ypramn4847ykdi4y5lhsmchnnp4nnnqycsn"; depends=[magic pracma tester]; }; spsh = derive2 { name="spsh"; version="1.1.0"; sha256="1rmsgp0mrb4153v5f5xby7r3izvgz1a0vi63g5p9q5jd6z0gd2i1"; depends=[DEoptim FME hypergeo lhs pracma Rdpack]; }; spsi = derive2 { name="spsi"; version="0.1"; sha256="0q995hdp7knic6nca0kf5yzkvv8rsskisbzpkh9pijxjmp1wnjrx"; depends=[plot3D]; }; @@ -16604,11 +16650,11 @@ in with self; { sqlutils = derive2 { name="sqlutils"; version="1.2"; sha256="0dq4idg8i4hv9xg8jllllizqf3s75pdfm1wgncdjj52xhxh169pf"; depends=[DBI roxygen2 stringr]; }; sqp = derive2 { name="sqp"; version="0.5"; sha256="0l01zwcryv5bmzmd98gj0m5ip8nvr8lziq1awvfif1bzwvvd2kzx"; depends=[Matrix Rcpp RcppArmadillo RcppEigen Rdpack]; }; squash = derive2 { name="squash"; version="1.0.9"; sha256="1x66iamj5pir6l9aqx4x7xylxxjpjrw8vcix9rbhfd0y0y2iqf7z"; depends=[]; }; - squashinformr = derive2 { name="squashinformr"; version="0.2.4"; sha256="1b70vbi4q17hz5w5f9x3d7sw43jcpkxd3jq43ic7i0ll91i80ami"; depends=[dplyr Hmisc janitor lubridate naniar plyr polite rlang rvest stringr tibble tidyr]; }; + squashinformr = derive2 { name="squashinformr"; version="0.2.5"; sha256="1403h52il9kyf16cm44lvib8sgdq0njrqsci8ng5ngryg2h2lacc"; depends=[dplyr Hmisc janitor lubridate naniar plyr polite rlang rvest stringr tibble tidyr]; }; squeezy = derive2 { name="squeezy"; version="1.0"; sha256="0ihlgdnfissi0kaw7gwiihrp7kw5447kbwnb7rb1l2jacs60v41n"; depends=[glmnet Matrix multiridge mvtnorm]; }; squid = derive2 { name="squid"; version="0.1.2"; sha256="1sf7q9pp68inr4ikaxm51f31gwxq9ixrsismrnnsby3agq6nsmkb"; depends=[arm data_table ggplot2 lme4 MASS shiny]; }; sra = derive2 { name="sra"; version="0.1.3"; sha256="0bdxgsz177szfqmvffidgkhl0lrdd7c1nzdvh7ijx99zmi5ww71n"; depends=[]; }; - srcr = derive2 { name="srcr"; version="1.0.0"; sha256="1wk18a1c0pf6mq3k78qi7fhivahx2q22rcs2ajsdj73b0993wnbm"; depends=[DBI dplyr jsonlite]; }; + srcr = derive2 { name="srcr"; version="1.1.0"; sha256="1cv4j27w9lssllih0lg172x1p001sk13p9hg39579lx6rpb9l75q"; depends=[DBI dplyr jsonlite]; }; sregsurvey = derive2 { name="sregsurvey"; version="0.1.0"; sha256="0bsiwhp6c8kv2kgdpwiafydgr1cia5y3c786qgil1b9wnswzxnj5"; depends=[caret dplyr gamlss gamlss_dist TeachingSampling]; }; srm = derive2 { name="srm"; version="0.3-6"; sha256="0mc97pv1hsmia4v2wyb8yi37i3v1xypfv9xmhjb989xnnysf1lm3"; depends=[Rcpp RcppArmadillo]; }; srp = derive2 { name="srp"; version="1.2.0"; sha256="0xdzfvi7z78xmyxwd8fha3lr86jwmgjba1w8hhn4sv3v5gc9vlkh"; depends=[fda mgcv]; }; @@ -16621,7 +16667,7 @@ in with self; { ssc = derive2 { name="ssc"; version="2.1-0"; sha256="1lq71p8hbjfg4a52009810k5dmhak9ddk1dywvhy7v2gjmxqnadw"; depends=[proxy]; }; sscor = derive2 { name="sscor"; version="0.2"; sha256="1kcrr90cxg6k4qkc3pidhkwf4dsnlgbxczxigr2afwpd9cpf104c"; depends=[mvtnorm pcaPP robustbase]; }; ssd = derive2 { name="ssd"; version="0.3"; sha256="1z61n9m6vn0ijawyz924ak0zfl9z13jsb4k4575b7c424ci2p6gy"; depends=[]; }; - ssdtools = derive2 { name="ssdtools"; version="0.3.6"; sha256="0np59vj37cdq413g77girc03n6gmjfjgln3mvqb1xb7x005ziqji"; depends=[abind actuar chk fitdistrplus ggplot2 lifecycle Rcpp scales tibble VGAM]; }; + ssdtools = derive2 { name="ssdtools"; version="0.3.7"; sha256="1mxkbf7skxg073nmy195c78fh8mimxnycnlx921y3pb9vrplsn2a"; depends=[abind actuar chk fitdistrplus ggplot2 lifecycle Rcpp scales tibble VGAM]; }; sse = derive2 { name="sse"; version="0.7-17"; sha256="0aqpi70rgmh2kmf11z2cvyl8c9klv8jm81pcpkzjrw3pbpgkqizf"; depends=[lattice]; }; ssev = derive2 { name="ssev"; version="0.1.0"; sha256="1iw07gw9vhg073s5kkxh5f1si6p998rc1i2zglnpk5c3pi3l55wp"; depends=[MESS pwr]; }; ssfa = derive2 { name="ssfa"; version="1.1"; sha256="0fkyalhsjmx2sf8xxkppf4vd272n99nbkxh1scidrsgp4jk6z7fx"; depends=[Matrix maxLik sp spdep]; }; @@ -16684,6 +16730,7 @@ in with self; { starter = derive2 { name="starter"; version="0.1.6"; sha256="1f7vmbiynaflbjd1pr8g1zmgxlkgyi1hb33xbah503qrz5iclfpf"; depends=[dplyr fs gert glue here purrr R_utils readr renv rlang stringr tibble usethis]; }; startup = derive2 { name="startup"; version="0.15.0"; sha256="05a5drjzmc969yn5y62gy1ja469nqrcbicycvjmlgrrfcj7918mi"; depends=[]; }; startupmsg = derive2 { name="startupmsg"; version="0.9.6"; sha256="0vkqxir4ady4dn9s70dfg1fxck2xg8vnmrmxjzvk01i6pc9zyq0x"; depends=[]; }; + starvars = derive2 { name="starvars"; version="1.1.8"; sha256="0l081xw1ad7b4qgdr6wywhqvq4icrpcid5khwck58i1v95qsq3is"; depends=[doSNOW foreach ks lessR MASS matrixcalc optimParallel quantmod vars xts zoo]; }; starvz = derive2 { name="starvz"; version="0.6.0"; sha256="0qmgijlj00rqkf47m06zf8p6gm94fylm7wamrip1zmf23mr7fhvk"; depends=[arrow BH car data_tree dplyr flexmix ggplot2 gtools lpSolve magrittr patchwork purrr RColorBrewer Rcpp readr rlang stringr tibble tidyr yaml zoo]; }; starwarsdb = derive2 { name="starwarsdb"; version="0.1.2"; sha256="00n9qqw4lbfk698qgvw8i42sy3dv5i5fiiqma3zks4rr9yspkldq"; depends=[DBI duckdb magrittr tibble]; }; stat_extend = derive2 { name="stat.extend"; version="0.1.4"; sha256="1m3bjwgb0g0c445xy9b29yibnf8ldjfnyd0i519dxnh31b6k8vy9"; depends=[sets]; }; @@ -16712,6 +16759,7 @@ in with self; { statprograms = derive2 { name="statprograms"; version="0.2.0"; sha256="0m7px7fmpz2zzlfdi7rbllcjvcjp8iy94f6fa1w4xinh7vz3y6vq"; depends=[]; }; statpsych = derive2 { name="statpsych"; version="1.0.0"; sha256="0rakzsbafhp5xps9bbb4pljv4c49ij1rwz64z0q5jjglc95kw55s"; depends=[mathjaxr Rdpack]; }; statquotes = derive2 { name="statquotes"; version="0.2.2"; sha256="1xzc3ndddjrlyld0p4zcwwxkj7i3m3adj7c78x9l4lhlw9mxbbqg"; depends=[stringr tidytext wordcloud]; }; + stats19 = derive2 { name="stats19"; version="2.0.0"; sha256="0minav2ab9xa9xq5mardjcijaxhs3v1izxmy15v5zf04lhvz4f03"; depends=[readr sf]; }; statsExpressions = derive2 { name="statsExpressions"; version="1.2.0"; sha256="0d95iv3k260mzsw3krp8vggz8xx7n1l5s8jdhiq1z4vr8mz41gcd"; depends=[BayesFactor correlation datawizard dplyr effectsize insight magrittr parameters performance rlang tibble tidyr WRS2 zeallot]; }; statsearchanalyticsr = derive2 { name="statsearchanalyticsr"; version="0.1.4"; sha256="0m2zv5sgv7w9yk6q7rwx8x2zy6xx5w0d6c9vynddr08pn4mdqjhs"; depends=[glue httr jsonlite lubridate purrr stringr tibble tidyr]; }; statsr = derive2 { name="statsr"; version="0.3.0"; sha256="138yjifz8q3dqcm3wbzn4sxdydwnqvwkz0h20r8ls3pijqh6fc2y"; depends=[BayesFactor broom cubature dplyr ggplot2 gridExtra knitr rmarkdown shiny tibble tidyr]; }; @@ -16729,11 +16777,12 @@ in with self; { stepPenal = derive2 { name="stepPenal"; version="0.2"; sha256="08gizl6c606ibbv7x2rdvfw37rghkrprwszha79yngkzpajw8gql"; depends=[caret dfoptim glmnet mvtnorm pROC]; }; stepPlr = derive2 { name="stepPlr"; version="0.93"; sha256="1i54nyz8z5vq3mzfh6h2vd1q0hsdazc4mhrj9ad0zdvn0qnz61lv"; depends=[]; }; stepR = derive2 { name="stepR"; version="2.1-1"; sha256="0mz88d7214g59nvr40c4gf4grq9skjqqlfgydbdzmc4l315nr4zv"; depends=[digest lowpassFilter R_cache Rcpp]; }; + stepjglm = derive2 { name="stepjglm"; version="0.0.1"; sha256="0xsb0wg7ka4ska2jkzaic7kqdzj2fkhpf5sxr3a116f2najj9ax2"; depends=[rsq]; }; stepp = derive2 { name="stepp"; version="3.2.2"; sha256="1iyj1f9gzn44xllhm9y1j0ynfz4q48d2l8ic4mjvzc3p4z8cnpmz"; depends=[car rstudioapi scales survival]; }; steps = derive2 { name="steps"; version="1.2.1"; sha256="04n5m7a5yp3karhiwgcl6fzfp85iad2xymdwp1kyqbagx2acyrka"; depends=[future future_apply memuse raster rasterVis Rcpp viridisLite]; }; stevedata = derive2 { name="stevedata"; version="0.5.0"; sha256="1cfq1fdyv8cxk4h1r7dgbypia3ih31svw3r024bkfzw986jqvzk0"; depends=[]; }; - stevedore = derive2 { name="stevedore"; version="0.9.3"; sha256="00zs2bl5h40rwbhnynjw2jbxlixjnk14rxn9chypqg5zgx9pqg2s"; depends=[crayon curl jsonlite yaml]; }; - stevemisc = derive2 { name="stevemisc"; version="1.2.0"; sha256="0dxql12ci68vm4dz839ds7ifz9g5p4gc7lqxpw98i37yabhqmpz5"; depends=[arm broom_mixed dplyr forcats ggplot2 httr labelled lme4 magrittr purrr rlang rmarkdown stringr tibble]; }; + stevedore = derive2 { name="stevedore"; version="0.9.4"; sha256="0qf7qid8sv3agzci7kvgh204h3p6bk60bh45zri987j2qqjjxiiy"; depends=[crayon curl jsonlite yaml]; }; + stevemisc = derive2 { name="stevemisc"; version="1.3.0"; sha256="0dkmq6510r36pihj2g8c4iya5j3sbsnq9gp5i72dqj9fwsx242ca"; depends=[arm broom_mixed dplyr forcats ggplot2 httr labelled lme4 magrittr purrr rlang rmarkdown stringr tibble tidyr]; }; stevetemplates = derive2 { name="stevetemplates"; version="0.6.0"; sha256="1xwf4c2g5n4av19xxj1vm3gv2200kqnzvxh7qzkbgs8b6s9ivly7"; depends=[rmarkdown]; }; stfit = derive2 { name="stfit"; version="0.99.8"; sha256="0js09v04ik5m3d9iz9waq0yigvg2g6n75m4zm5dc0nz3yr1irb88"; depends=[abind doParallel fda foreach Matrix raster rasterVis RColorBrewer Rcpp]; }; stickr = derive2 { name="stickr"; version="0.3.1"; sha256="0krz123vz4bdcdi4p27r637pgz4rcj6kmyiqdf5x69riddvfxx8r"; depends=[base64enc fs gh stringr]; }; @@ -16763,11 +16812,10 @@ in with self; { stocks = derive2 { name="stocks"; version="1.1.4"; sha256="0b6rl7pfkgzbpwnv7zzkr36hs5f1zb60d16ijslf7g9m25vvcyg6"; depends=[dvmisc Hmisc lubridate quantmod rbenchmark RColorBrewer Rcpp TTR zoo]; }; stoichcalc = derive2 { name="stoichcalc"; version="1.1-3"; sha256="0z9fnapibfp070jxg27k74fdxpgszl07xiqfj448dkydpg8ydkrb"; depends=[]; }; stokes = derive2 { name="stokes"; version="1.0-8"; sha256="0hdw7yyakbn78prxyydv09j2k3xj2fwy0v2nxw3n7mm2qgkjggg9"; depends=[magrittr mathjaxr partitions permutations spray]; }; - stopwords = derive2 { name="stopwords"; version="2.2"; sha256="1f862y30c4r0phamlp7shzkpxg0vh3i410xy0336w310hv3wqsxn"; depends=[ISOcodes]; }; + stopwords = derive2 { name="stopwords"; version="2.3"; sha256="1ci1cgxrcvlhhplximsfv0plvjdbcd5kv0nphxnpildsn5m1rv65"; depends=[ISOcodes]; }; storr = derive2 { name="storr"; version="1.2.5"; sha256="0qszdq16bf0dbss33zi63ciwmkgjsyc0c3akrr2kl14w3ncw6922"; depends=[digest R6]; }; storywranglr = derive2 { name="storywranglr"; version="0.2.0"; sha256="07w3dwv2naqbbdzjcv58cisj7cv1rbhrk96a30q8ww11rf953rj4"; depends=[dplyr httr jsonlite tibble urltools]; }; stosim = derive2 { name="stosim"; version="0.0.14"; sha256="10k8j7manskjsrjc1l44yhy682b1qh0k2jx3cs5k69j2z42mnhmk"; depends=[Rcpp]; }; - stplanr = derive2 { name="stplanr"; version="0.8.4"; sha256="0mkkaz47a3cfbi4jqm930j8dyg3y5j9njqp9za121arsyv0jp3zf"; depends=[curl data_table dplyr geosphere httr igraph jsonlite lwgeom magrittr maptools nabor pbapply raster Rcpp RcppArmadillo rgeos rlang sf sfheaders sp stringr]; }; stpm = derive2 { name="stpm"; version="1.7.10"; sha256="0y9rpqjn33gdqjvag4kb6dr00w80paspgj9ic25brclfv1zmzbhf"; depends=[MASS nloptr Rcpp RcppArmadillo sas7bdat survival]; }; stpp = derive2 { name="stpp"; version="2.0-5"; sha256="1p7dxzfhi5pvva956nyypl7dfdgq3m0cara73hai87qzc342xcf0"; depends=[ggplot2 gridExtra KernSmooth plot3D rgl rpanel spatstat_core spatstat_geom splancs]; }; str2str = derive2 { name="str2str"; version="0.2.1"; sha256="180m261hr0qr3mnm8hbvjbw3q44cr1kfrnq97fvkpypigdycd9z4"; depends=[abind checkmate plyr reshape]; }; @@ -16833,7 +16881,7 @@ in with self; { subscreen = derive2 { name="subscreen"; version="3.0.5"; sha256="0786p2n1a4xjsxnd31w2b079ggdzx9pgn14d5vbngrc6mgjm9hk8"; depends=[bsplus colourpicker data_table dplyr DT jsonlite plyr purrr randomForestSRC shiny shinyjs shinyWidgets]; }; subselect = derive2 { name="subselect"; version="0.15.2"; sha256="0ggpm5bq4ncx4302855s8x1nj0afjizmi81cg6b7xc7rvpirw0fq"; depends=[corpcor ISwR MASS]; }; subspace = derive2 { name="subspace"; version="1.0.4"; sha256="0p2j0lnwj3ym1v4xla6r97zjikb8alnibdc690xn9c0z21hmv43v"; depends=[colorspace ggvis rJava stringr]; }; - subtee = derive2 { name="subtee"; version="0.3-7.1"; sha256="0cvqpmwkw6bzygvkd3842sikfm3lbrhch317pc3n4z0ffz3w2xxn"; depends=[ggplot2 MASS matrixStats survival]; }; + subtee = derive2 { name="subtee"; version="1.0.0"; sha256="09ah1n3whdycygbi1a6pwgm5jqs1srd565p3ihkk5ygp4gl2r3z9"; depends=[ggplot2 MASS matrixStats survival]; }; subtype = derive2 { name="subtype"; version="1.0"; sha256="1094q46j0njkkqv09slliclp3jf8hkg4147hmisggy433xwd19xh"; depends=[penalized ROCR]; }; sudachir = derive2 { name="sudachir"; version="0.1.0"; sha256="09ry00c3yhrz8fiyxdxgj9r3x7kldsl6fv35mmi5ysc2549kbcfb"; depends=[cli dplyr glue magrittr purrr reticulate rlang tibble tidyselect]; }; suddengains = derive2 { name="suddengains"; version="0.4.4"; sha256="160jna9imnpy91f6pa881w6wlrwy59db0nijrn1sf5ym1cmh5gz5"; depends=[dplyr forcats ggplot2 ggrepel magrittr naniar patchwork psych readr rlang scales stringr tibble tidyr]; }; @@ -16856,6 +16904,7 @@ in with self; { superdiag = derive2 { name="superdiag"; version="2.0"; sha256="0zfy9ain6agh276av0p66mks3rap42n8yma0dr6qbc14z3nh8w0m"; depends=[coda]; }; superheat = derive2 { name="superheat"; version="0.1.0"; sha256="01v8s6px1k5fajlm6py3ksr1i853kwwlky1yryzhy3p1cxhwgg83"; depends=[dplyr ggdendro ggplot2 gtable magrittr plyr scales]; }; superml = derive2 { name="superml"; version="0.5.3"; sha256="1k0hcjspv0q6wg0yarvgjs7ql7d587nijicmz3lfhpph2n3hghvb"; depends=[assertthat BH data_table Metrics R6 Rcpp RcppArmadillo]; }; + supernova = derive2 { name="supernova"; version="2.4.4"; sha256="122srb8mbpgywcl8ggv33dlpl64489r3r3mcsrpvly29c2i7qx4f"; depends=[backports cli ggplot2 magrittr pillar purrr rlang stringr tibble vctrs]; }; superpc = derive2 { name="superpc"; version="1.12"; sha256="0n68qafsww00q0wx37ms3rimrlhbp085ywvv2k5vw951j4z8ivfb"; depends=[survival]; }; supervisedPRIM = derive2 { name="supervisedPRIM"; version="2.0.0"; sha256="1j5gsy119pvrhkkg048lyk6hjvn9x1bhmfy5g824gj3k1w5slrib"; depends=[prim]; }; suppdata = derive2 { name="suppdata"; version="1.1-7"; sha256="1kga3jczxa9wjazl7gcks2p521y7c2y1518v7wk48sm7yri6sm4p"; depends=[httr jsonlite rcrossref xml2]; }; @@ -17012,7 +17061,7 @@ in with self; { systemicrisk = derive2 { name="systemicrisk"; version="0.4.2"; sha256="021ypw9fag5kmk2q041pj2jfzgfg640yda7wvh0yzdmg73p6fvsw"; depends=[lpSolve Rcpp]; }; syt = derive2 { name="syt"; version="0.2.0"; sha256="1pfl3d6laa075z88fqgjnrsn21lgjsak0bjdws09b9knc0ifgfsz"; depends=[Matrix partitions]; }; syuzhet = derive2 { name="syuzhet"; version="1.0.6"; sha256="16iccqdbw02iw82nah6kwz3gwfghi864j2y698n4b9dyc386ijzv"; depends=[dplyr dtt NLP rlang textshape tidyr zoo]; }; - tLagPropOdds = derive2 { name="tLagPropOdds"; version="1.1"; sha256="019b96ny4ja2x3vl9sps2dw8shgwvqh19ajsmxc9dc5pv2nx49cs"; depends=[dplyr R_utils survival]; }; + tLagPropOdds = derive2 { name="tLagPropOdds"; version="1.2"; sha256="01lmjhzcchps8fm15wiq7gm3mf0s99fqzghbwarsldj7ywvz7adh"; depends=[dplyr R_utils survival]; }; tRnslate = derive2 { name="tRnslate"; version="0.0.3"; sha256="0sm0cqxylsxmnhqs1c8w81d6q2sj7nmm86mds59kiyspy9m67sbc"; depends=[]; }; tRophicPosition = derive2 { name="tRophicPosition"; version="0.7.7"; sha256="1j06rc5s6jpz8i116m98ygc75sx6lk8jd9gw6fb8q342mbbmqh8h"; depends=[coda data_table ggplot2 gridExtra hdrcde MCMCglmm plyr rjags]; }; tTOlr = derive2 { name="tTOlr"; version="0.2"; sha256="1fk33vp6y65mls1iczjf63wzj1rl1knbdcbd4rnqqfdcqhibb3p3"; depends=[lattice latticeExtra]; }; @@ -17025,6 +17074,7 @@ in with self; { table_glue = derive2 { name="table.glue"; version="0.0.2"; sha256="01yskmc604jdy6givddm0nhr9ylf7p68v2xz1p2mqylhws1lszph"; depends=[glue stringi]; }; table1 = derive2 { name="table1"; version="1.4.2"; sha256="1cw85nj6w9fk66wjbyz08ya6g027cfj3brb0sx7ar0n7zyc8rhb4"; depends=[Formula htmltools knitr yaml]; }; table1xls = derive2 { name="table1xls"; version="0.4.0"; sha256="0ixbshbp9hkcg12hj32vgb5bp0pj4rbc3i6g1xdg2zhqp7zanics"; depends=[XLConnect]; }; + tableExtra = derive2 { name="tableExtra"; version="1.0.1"; sha256="1rbcxd3rjhvcpayj6d7mh30vkbc7g4mv4qa7552xz3x1wny0n4mm"; depends=[gtable]; }; tableHTML = derive2 { name="tableHTML"; version="2.1.0"; sha256="01bffjqi2qs66w67l5nc0imqdcaf4cky930srkd2wmvvawv85kwc"; depends=[htmltools jpeg magrittr png shiny webshot]; }; tableMatrix = derive2 { name="tableMatrix"; version="0.82.0"; sha256="1sskijhbqakamrk2rv7v5zpjsdi8jw0jl2z96l0vhsvsiq0cz1c8"; depends=[data_table]; }; tableone = derive2 { name="tableone"; version="0.13.0"; sha256="0ihk29gcbqvvif2y8aalgnpq8y87irrp8z6ik4iaxh2xb6ksawqw"; depends=[e1071 gmodels labelled MASS nlme survey zoo]; }; @@ -17042,10 +17092,8 @@ in with self; { tabularaster = derive2 { name="tabularaster"; version="0.7.0"; sha256="061nc82svcz37lvwsx549rn6s2q6x75wjs0j9k8zcvlzr5wyyfgi"; depends=[dplyr fasterize magrittr raster silicate spatstat_geom tibble]; }; tabularmaps = derive2 { name="tabularmaps"; version="0.1.0"; sha256="07i76n2fpl2ma6jl3zdbay0zmmaaxrxhv1368xm2d575br42nri4"; depends=[ggforce ggplot2 purrr rlang]; }; tabulator = derive2 { name="tabulator"; version="1.0.0"; sha256="1dylmw5prwir3qj13lxkvlzq6j7r23y3gz1g0bjyanb0xmzgxn4k"; depends=[assertthat data_table dplyr magrittr purrr rlang stringr tibble tidyr]; }; - tabulizer = derive2 { name="tabulizer"; version="0.2.2"; sha256="0zd5cfqwgirqchw1mvziscxvzl8pb1y6rbfywkn9i9pxfydkm5vi"; depends=[png rJava tabulizerjars]; }; - tabulizerjars = derive2 { name="tabulizerjars"; version="1.0.1"; sha256="005n2gyzzmq8h0mpj8xs6ri6llzwag7nqzpm4vnzp81vwy8kmf92"; depends=[rJava]; }; tabulog = derive2 { name="tabulog"; version="0.1.1"; sha256="0n6qjd7kmvxx5na71f358pw3bbwa69vh8qjkrs5mkb3izxabcq67"; depends=[yaml]; }; - tabxplor = derive2 { name="tabxplor"; version="1.0.1"; sha256="0n2hk0b288b2bqfhqv1yps9n150aml7vmkr6ic7cffc95dcvxqss"; depends=[cli crayon DescTools dplyr forcats kableExtra magrittr pillar purrr rlang stringi stringr tibble tidyr tidyselect vctrs]; }; + tabxplor = derive2 { name="tabxplor"; version="1.0.2"; sha256="0gwnw4psgz5byfrpvm3s5bfc13fwmw0wh8fafrr8rpbwm8gy33fy"; depends=[cli crayon DescTools dplyr forcats kableExtra magrittr pillar purrr rlang stringi stringr tibble tidyr tidyselect vctrs]; }; tacmagic = derive2 { name="tacmagic"; version="0.3.1"; sha256="1rayyavjppi5dbcmb4yb2nf85ch2li766sdllfsirb19bb3d4c2d"; depends=[pracma R_matlab]; }; tactile = derive2 { name="tactile"; version="0.2.0"; sha256="0jjfbsadxbf9s6vzi82rw5qa6hdc8iz4jci9xpbzwrjkb90dzd08"; depends=[gridExtra lattice latticeExtra MASS RColorBrewer]; }; tagcloud = derive2 { name="tagcloud"; version="0.6"; sha256="04zrh029n8pjlxlr6pdd7xhqqhavbrj3fhvhj6ygzlvi2jslxnwl"; depends=[RColorBrewer Rcpp]; }; @@ -17059,8 +17107,9 @@ in with self; { tangram_pipe = derive2 { name="tangram.pipe"; version="1.1.0"; sha256="08whj66nf3idqvjnzgni5iqyqakbdwvrapdixx0zff7q8qbkar8z"; depends=[dplyr]; }; tapkee = derive2 { name="tapkee"; version="1.2"; sha256="1xgz2cv5jb1hdnl8y8zs4x6p1dk1vv8zbs4wfsj61gpfyf9gkh4f"; depends=[]; }; tapnet = derive2 { name="tapnet"; version="0.3"; sha256="1fjg98m19iwbzijs5b5l4ssrbx1shv1hmgn1166cbni9y76m44sh"; depends=[ape bipartite MPSEM phytools vegan]; }; - tarchetypes = derive2 { name="tarchetypes"; version="0.3.1"; sha256="05m27inf7sbf96z3qfaj1659pwifysav85gp2r9w8jk45da6wm49"; depends=[digest fs rlang targets tibble tidyselect vctrs withr]; }; - targets = derive2 { name="targets"; version="0.8.0"; sha256="0lcn4la6qh3ljks8s7q9il2hm2lzfhf5wzi5igxs9d0xlqxr2r8n"; depends=[callr cli codetools data_table digest igraph knitr R6 rlang tibble tidyselect vctrs withr yaml]; }; + tarchetypes = derive2 { name="tarchetypes"; version="0.3.2"; sha256="0nwxzda3nbb3m7hjyffdizdgjspzw9zmmz26gxzkgvgpz820g4p9"; depends=[digest fs rlang targets tibble tidyselect vctrs withr]; }; + targeted = derive2 { name="targeted"; version="0.2.0"; sha256="0xcw2xcvp4yz37djl2m7fwr61hfrarbrr05rcnbqkjs3y4q5p99g"; depends=[data_table digest futile_logger future_apply lava optimx progressr Rcpp RcppArmadillo]; }; + targets = derive2 { name="targets"; version="0.8.1"; sha256="09qdb9v2wzklva3g7d3cxhl2720nsxc9qn5j7v731mgb7k2l5qv9"; depends=[callr cli codetools data_table digest igraph knitr R6 rlang tibble tidyselect vctrs withr yaml]; }; tashu = derive2 { name="tashu"; version="0.1.1"; sha256="0rirjalridr79a7j3qz80l2vp6m8paqr97ac241b58756k7nr5j7"; depends=[dplyr drat ggplot2 lubridate plyr randomForest RColorBrewer reshape2]; }; tastypie = derive2 { name="tastypie"; version="0.1.0"; sha256="15ivl0rvnp1j09axk0jaf1wip5cjbnvfmx0crhqqd5y27mfa2hzd"; depends=[dplyr fmsb ggplot2 packcircles RColorBrewer scales shadowtext tibble]; }; tatest = derive2 { name="tatest"; version="1.0"; sha256="1yd9pdpdhxwpllnj5wxa7ly29qiw8qywx9lx0w3nizczlx35fgjy"; depends=[]; }; @@ -17091,7 +17140,7 @@ in with self; { tcpl = derive2 { name="tcpl"; version="2.0.2"; sha256="0xic4jy8ldawmkvvwckiyy57ai5wif9yn7hyfndbxr6mvjl3rbbc"; depends=[data_table DBI numDeriv RColorBrewer RMySQL sqldf]; }; tcplfit2 = derive2 { name="tcplfit2"; version="0.1.3"; sha256="1y69z27mgphcj5qkhlpgv0as59aralimf7mbfrdz5n6nkqfj5krr"; depends=[future future_apply numDeriv RColorBrewer stringr]; }; tcsinvest = derive2 { name="tcsinvest"; version="0.1.1"; sha256="1harmb5ni70k241aq1vww5w7fmjqmlwd6nfma2xa44f3hj7nrf52"; depends=[data_table httr jsonlite websocket]; }; - td = derive2 { name="td"; version="0.0.4"; sha256="1wv34bn86rxm2ljwz9sdy4zdssjy7mwwk56y2civji34821119q6"; depends=[RcppSimdJson]; }; + td = derive2 { name="td"; version="0.0.5"; sha256="1wbhrz0yv1zv974xbz17k25dgb30afbhgk5xa8g928zfw9hbvrqa"; depends=[RcppSimdJson]; }; tdROC = derive2 { name="tdROC"; version="1.0"; sha256="137j1m9pysjcz1gsfcym0438by3c7na21ccjlqf7xfccr1y8k2k6"; depends=[survival]; }; tdaunif = derive2 { name="tdaunif"; version="0.1.0"; sha256="0a24lqiimp54fmj4zi7bakxral8ny60n25h9arwl6m00c7cn98pl"; depends=[]; }; tdigest = derive2 { name="tdigest"; version="0.3.0"; sha256="17axsir4xig3vm3sc2gziy9n0p80b14vg52nwys23bzkfp0n63bm"; depends=[magrittr]; }; @@ -17151,11 +17200,11 @@ in with self; { texreg = derive2 { name="texreg"; version="1.37.5"; sha256="0cb3kvxfi9k9g958fkb73cgqdxx3h9bz2cnaakic4wgrkv27mk2c"; depends=[httr]; }; text = derive2 { name="text"; version="0.9.10"; sha256="1ramsv2pbg57yyxp5qjkls82gl5icda6f5116hr0w5s0w3jpajmj"; depends=[cowplot dplyr furrr future ggplot2 ggrepel magrittr parsnip purrr recipes reticulate rlang rsample stringr tibble tidyr tokenizers tune workflows yardstick]; }; text_alignment = derive2 { name="text.alignment"; version="0.1.2"; sha256="0qjnzdm7savn2jqmm23cd3rszyihnhb5rfnygc36ccfd15vav79j"; depends=[Rcpp]; }; - text2map = derive2 { name="text2map"; version="0.1.0"; sha256="1hr3wj9j86siixqa37kgjp21j3hrgk3afb9f88s5qxv2zrgjd37m"; depends=[doParallel dplyr fastmatch foreach igraph kit magrittr Matrix mlpack qgraph rlang stringi stringr text2vec tibble]; }; + text2map = derive2 { name="text2map"; version="0.1.1"; sha256="1kwbb9bp3ikksh24i69gclmanyqri3xn7rdbf1x93lhj7fxzbxrs"; depends=[doParallel dplyr fastmatch foreach igraph kit magrittr Matrix mlpack qgraph rlang stringi stringr text2vec tibble]; }; text2sdg = derive2 { name="text2sdg"; version="0.1.0"; sha256="1a4ms4bha7h8mrbjzv5rb3s4gc1s5s22x5c97ss82r9pdb2ynvck"; depends=[corpustools dplyr ggplot2 magrittr stringr tibble tidyr]; }; text2speech = derive2 { name="text2speech"; version="0.2.13"; sha256="0c0h4yfp1gzaf4snav84iy5m0fx8az0pw1h2s33239dxkwcff893"; depends=[aws_signature dplyr googleAuthR googleLanguageR httr knitr magrittr mscstts tuneR]; }; text2vec = derive2 { name="text2vec"; version="0.6"; sha256="0r75cv77x2zm1z66s95hic71dpbqmybz39n48q6mz7gfd3m7312y"; depends=[data_table digest lgr Matrix mlapi R6 Rcpp rsparse stringi]; }; - textTinyR = derive2 { name="textTinyR"; version="1.1.5"; sha256="0j3qy3f66bv839ybw1g17g9ygr099fgmxgdpi5l7md6mv1b7nlgs"; depends=[BH data_table Matrix R6 Rcpp RcppArmadillo]; }; + textTinyR = derive2 { name="textTinyR"; version="1.1.7"; sha256="17c3vciqx2i0h0jkqsiva8kp6pwcrscwgyxf804sjvdbym0pwc7d"; depends=[BH data_table Matrix R6 Rcpp RcppArmadillo]; }; textTools = derive2 { name="textTools"; version="0.1.0"; sha256="1d9j1bj17ki169h4lmlz2b2c2m60q6b95prjscz346lc4vw5160a"; depends=[data_table]; }; textcat = derive2 { name="textcat"; version="1.0-7"; sha256="1m31alkzy13acgf4ahnzpbyazflhpmry369vqdvn5f86wcsls833"; depends=[slam tau]; }; textclean = derive2 { name="textclean"; version="0.9.3"; sha256="0kgjh6c4f14qkjc4fds7q7rpf4nkma3p0igm54fplmm3p853nvrz"; depends=[data_table english glue lexicon mgsub qdapRegex stringi textshape]; }; @@ -17230,7 +17279,7 @@ in with self; { tibblify = derive2 { name="tibblify"; version="0.1.0"; sha256="0mdi9x36nrlcbchl7b2rlf4j1k0y6c7657aznm7xa0396ciij5fk"; depends=[crayon purrr rlang tibble vctrs]; }; tictactoe = derive2 { name="tictactoe"; version="0.2.2"; sha256="1fx8plj5zr04xwk5hfj3zqhcknidxlzya2q14cf0m3y33a86lx42"; depends=[hash]; }; tictoc = derive2 { name="tictoc"; version="1.0.1"; sha256="0197f540fkcxx5blx9jjnbvwgdnsdv55znmvgdizdp8pqhsib6m0"; depends=[]; }; - tidyBdE = derive2 { name="tidyBdE"; version="0.2.1"; sha256="1ygkr9l23s96l9x7wr12xbvgjkx9h9dljkl522a1j5x8l06yf6rc"; depends=[dplyr ggplot2 readr scales tibble]; }; + tidyBdE = derive2 { name="tidyBdE"; version="0.2.2"; sha256="041hwm73galrwjr4xnwzw5pzwp54g88w0464gmszrhs27lhhsr06"; depends=[dplyr ggplot2 readr scales tibble]; }; tidyCpp = derive2 { name="tidyCpp"; version="0.0.5"; sha256="1ad10m831k0askr15yv6drmjh7rlg0py1ib8zmpsgj57v5s9wx3p"; depends=[]; }; tidyHeatmap = derive2 { name="tidyHeatmap"; version="1.3.1"; sha256="107bfyjakqfiimnwdyl2nhvx1fjpzv693akvi5l0cai6vjs007wj"; depends=[circlize ComplexHeatmap dendextend dplyr lifecycle magrittr purrr RColorBrewer rlang tibble tidyr viridis]; }; tidyLPA = derive2 { name="tidyLPA"; version="1.0.8"; sha256="0jrvd92q20kzz83lid9vvdh0l3l1kbc4m77cim261gzra1p7w5y0"; depends=[dplyr ggplot2 gtable mclust mix MplusAutomation tibble]; }; @@ -17279,8 +17328,10 @@ in with self; { tidyrules = derive2 { name="tidyrules"; version="0.1.5"; sha256="04y6pnrp132sckjpp9g8yl0z7glcsx9dcfdpa8r27wsc2g491i63"; depends=[assertthat magrittr partykit purrr stringr tibble]; }; tidyselect = derive2 { name="tidyselect"; version="1.1.1"; sha256="0ss8mq05mwif64cj8zmrfx0ljgy3n0fvyv7f37782shr8rknmsqq"; depends=[ellipsis glue purrr rlang vctrs]; }; tidyseurat = derive2 { name="tidyseurat"; version="0.3.0"; sha256="19f6046z1apmj11cp481rgv53mv25izwrpijy6s4xv5iqgpczb1n"; depends=[cli dplyr ellipsis fansi ggplot2 lifecycle magrittr pillar plotly purrr rlang Seurat SeuratObject stringr tibble tidyr tidyselect]; }; + tidysmd = derive2 { name="tidysmd"; version="0.1.0"; sha256="0hbjcccs36i2cip6k56hv39awdxiljv322zlidlphkab7h95xiqc"; depends=[dplyr ellipsis glue purrr rlang smd tidyr tidyselect]; }; tidysq = derive2 { name="tidysq"; version="1.1.2-1"; sha256="14gsm4hlm9vd85wpsgvk2w5hzmjayxs5ryh1j8zx2rsp98ypxrcm"; depends=[checkmate cli crayon dplyr pillar Rcpp testthat tibble vctrs]; }; tidystats = derive2 { name="tidystats"; version="0.5"; sha256="0shvrrqd5c89d4pncbqa80kzzf9v31drm170hiivjscldphkk43h"; depends=[dplyr jsonlite purrr readr stringr tibble tidyr]; }; + tidystopwords = derive2 { name="tidystopwords"; version="0.9.1"; sha256="00kak679ddwdgvqmjs5312w9k8sapc1n7dxipgqqfjqw2xy0h1jh"; depends=[dplyr]; }; tidystringdist = derive2 { name="tidystringdist"; version="0.1.4"; sha256="1srxh5gyspcghzvnmpyq36ky608ipf71vv0s1jg01mgf2i5pdkf4"; depends=[attempt rlang stringdist tibble]; }; tidysynth = derive2 { name="tidysynth"; version="0.1.0"; sha256="0rckvp51gp22bjcwcszdhhn51bzjivwndnvjcf67h1vmyqa3zjkj"; depends=[dplyr forcats ggplot2 kernlab LowRankQP magrittr optimx rgenoud rlang tibble tidyr]; }; tidytable = derive2 { name="tidytable"; version="0.6.5"; sha256="1k8zl5hxbmizas8lhcp5nzqis7wikn9bbdjwjkc6cpzbpr722bd3"; depends=[data_table glue lifecycle magrittr pillar rlang tidyselect vctrs]; }; @@ -17337,7 +17388,7 @@ in with self; { tinyProject = derive2 { name="tinyProject"; version="0.6.1"; sha256="0cflnfp5mib3j1y3n5yvi867h5a7z6xr6163gq9y9b6nrl2skxfk"; depends=[brew R_utils]; }; tinyarray = derive2 { name="tinyarray"; version="2.2.6"; sha256="0k99i0k1l5bjh08pgsxcanq74zw7hraawc679km6bblhh7yag2az"; depends=[BiocManager clusterProfiler dplyr ggplot2 limma org_Hs_eg_db patchwork pheatmap stringr survival survminer tibble]; }; tinylabels = derive2 { name="tinylabels"; version="0.2.1"; sha256="1gvj8l6lvhjxx6fpk825jdgwq34ikm4wmjicyn486spxjc81bw85"; depends=[]; }; - tinyscholar = derive2 { name="tinyscholar"; version="0.1.3"; sha256="0m2m6x7z6vx1b4cri3si445rw9dj66mh164q7an26d20y2yfk1cb"; depends=[curl dplyr ggplot2 gt jsonlite magrittr purrr R_utils rlang rvest stringr xml2]; }; + tinyscholar = derive2 { name="tinyscholar"; version="0.1.4"; sha256="0lj5ax3m5kr18qf9xmrh6iyy00bp59wwi3ss96ynsyiajmndsajf"; depends=[curl dplyr ggplot2 gt jsonlite magrittr purrr R_utils rlang rvest stringr xml2]; }; tinyspotifyr = derive2 { name="tinyspotifyr"; version="0.2.2"; sha256="19nicp1ml73lylja2np52rcc070maxm9286fjm7bfx3zsblxmakc"; depends=[httr jsonlite]; }; tinytest = derive2 { name="tinytest"; version="1.3.1"; sha256="1mq31f7bzcz5bkgzl9khm1i80axfzra7gcjqxd2yqb4wrw1m3x4s"; depends=[]; }; tinytex = derive2 { name="tinytex"; version="0.34"; sha256="16z6v06pmvg02rbxkqyiidasg1dryy759zabnqjw6y85nybr618x"; depends=[xfun]; }; @@ -17403,7 +17454,7 @@ in with self; { torchaudio = derive2 { name="torchaudio"; version="0.2.0"; sha256="1bzx428lzjdwb9ds2pcq7nlalg75s7bvmiimjw3k8lvbq50yjlyh"; depends=[fs glue rappdirs Rcpp rlang torch withr]; }; torchdatasets = derive2 { name="torchdatasets"; version="0.1.0"; sha256="1iliz3iv143zmffd4jvvfxzsqn8bzp1sg5573rqjjbhnvy958mgg"; depends=[fs pins stringr torch torchvision withr zip]; }; torchvision = derive2 { name="torchvision"; version="0.4.0"; sha256="0ndncq6qn54lp681khlhrwhywjnhi2wwirhysjhjyky6n2y378i4"; depends=[abind fs jpeg png rappdirs rlang torch zip]; }; - tosca = derive2 { name="tosca"; version="0.3-1"; sha256="0rxf3hh2kn1hg70mabv1xljw9v4rf0zr7phyxrb69mbphcwgdbj4"; depends=[data_table htmltools lda lubridate quanteda RColorBrewer stringr tm WikipediR]; }; + tosca = derive2 { name="tosca"; version="0.3-2"; sha256="1z8svczy93lpdj7n1gk9jz8jgzkjsf886ldlkgq1mfi1j6m8557y"; depends=[data_table htmltools lda lubridate quanteda RColorBrewer stringr tm WikipediR]; }; tosls = derive2 { name="tosls"; version="1.0"; sha256="03nqwahap504yvcksvxdhykplbzmf5wdwgpzm7svn8bymdc472v2"; depends=[Formula]; }; tosr = derive2 { name="tosr"; version="0.1.0"; sha256="0ifqzddivb5xn1pm32hi0ys3lcb2ncv7ka8vl4pzmhq0yx05a7dg"; depends=[bibliometrix CINNA dplyr igraph magrittr rebus rlang stringr tibble tidyr]; }; totalcensus = derive2 { name="totalcensus"; version="0.6.6"; sha256="09c7hm9yys48p8pjp9kv3szbwrg9xb1xf47zya24yir0gxs7bfmi"; depends=[data_table magrittr purrr stringr]; }; @@ -17531,7 +17582,7 @@ in with self; { trustOptim = derive2 { name="trustOptim"; version="0.8.7.3"; sha256="11cx90zq9987i7kc86kxbip6c75bmw51shlwq2x9ywhybzk8vxl8"; depends=[Matrix Rcpp RcppEigen]; }; trustedtimestamping = derive2 { name="trustedtimestamping"; version="0.2.6"; sha256="1rx7ypy331mq5ni5hxhqcfnicvwdgg9j2pm3aj097a5hhigibdrq"; depends=[digest httr jsonlite]; }; truthiness = derive2 { name="truthiness"; version="1.2.5"; sha256="0cssqlrilx2lglr2f53yysqgf604g4y326ijf8avlg6v5l6hlcr1"; depends=[dplyr DT emmeans ez forcats ggplot2 lme4 magrittr MASS ordinal purrr Rdpack readr rmarkdown tibble tidyr]; }; - tryCatchLog = derive2 { name="tryCatchLog"; version="1.2.4"; sha256="163mjif6819s53wn818siymmzc7n0xyd031s9c5n5irgs3dicfqj"; depends=[]; }; + tryCatchLog = derive2 { name="tryCatchLog"; version="1.3.1"; sha256="0k40a48qzwmardjnkf0h5s5zryivzvdanz61kxdqdfqlil19ma0d"; depends=[]; }; ts_extend = derive2 { name="ts.extend"; version="0.1.1"; sha256="03b358nywx0zynb6006886mzvz1mbbaim6b5m641drklh6k0l6r1"; depends=[]; }; tsBSS = derive2 { name="tsBSS"; version="1.0.0"; sha256="04nsbifc6zkilqifj6iwc0vf2z84y8wcbf8pndgkzi039kk6c385"; depends=[boot BSSprep forecast ICtest JADE Rcpp RcppArmadillo xts zoo]; }; tsDyn = derive2 { name="tsDyn"; version="10-1.2"; sha256="0wwp18qaxljdy1zqww1qw9fa9ycvgwcf6j52cpx3v2f2177x7snc"; depends=[foreach forecast MASS Matrix mgcv mnormt nnet tseries tseriesChaos urca vars]; }; @@ -17539,7 +17590,7 @@ in with self; { tsPI = derive2 { name="tsPI"; version="1.0.3"; sha256="00p7275iq8qn6c6dpqjr5s9fzc0a6njqqi9gvqnh5s9lfx9mbk1v"; depends=[KFAS]; }; tsSelect = derive2 { name="tsSelect"; version="0.1.8"; sha256="0ysijzhhwaj5n7h50jacshnla6d0h61q0f6lj19ic0lwvlz4yazy"; depends=[forecast]; }; tsallisqexp = derive2 { name="tsallisqexp"; version="0.9-4"; sha256="07ymkrik1vwblcj5i0crihbrrxkrn8xjkap3lrzxy4vidgqalw3f"; depends=[]; }; - tsapp = derive2 { name="tsapp"; version="1.0.3"; sha256="1k2r8nnqbkgrhgdqg45y0svzqj521wl6vbss23yypwh1gcbddzn9"; depends=[fftwtools Matrix vars]; }; + tsapp = derive2 { name="tsapp"; version="1.0.4"; sha256="1x3f10rdg3ihq5cx6w1zyz3irv1wsgx6admz5qv3zwwlk0z6cwpx"; depends=[fftwtools hdm Matrix vars]; }; tsbox = derive2 { name="tsbox"; version="0.3.1"; sha256="0vm6w6y9j2xgzappqjv6p40nl0lrbx3jzqjya9ahhapaklhb1hx3"; depends=[anytime data_table]; }; tsc = derive2 { name="tsc"; version="1.0-3"; sha256="1acsdkxizlkix1sskwqv2a80rshw6f14zvcsjhrmmdfd4bmwh36y"; depends=[]; }; tscopula = derive2 { name="tscopula"; version="0.2.1"; sha256="01zxwncr5azprcqm801qsa3v0c5hffycm4rxkqbxkaz11wvijhj3"; depends=[arfima FitAR FKF ltsa Matrix rvinecopulib xts zoo]; }; @@ -17558,7 +17609,7 @@ in with self; { tsfngm = derive2 { name="tsfngm"; version="0.1.0"; sha256="1wx1imbvnc2bjvfal45zhgpz296fiydqffb0rk428xpjgp2dj6p7"; depends=[]; }; tsgui = derive2 { name="tsgui"; version="0.2.1"; sha256="0crm2ripxpjaz1cqz9lkj3y9xj4ia0hlq4lvz1rff0wq6d5w79dn"; depends=[RandomFieldsUtils tcltk2 tkrplot]; }; tsiR = derive2 { name="tsiR"; version="0.4.3"; sha256="0xzcfdad1z8336wnsrk9sy21psd898wwkdkndq7dshqwp2rj2kxl"; depends=[ggplot2 kernlab reshape2]; }; - tsibble = derive2 { name="tsibble"; version="1.0.1"; sha256="07c412jkybv3bw056f6xd7f5f7231qgynck31r396dqnq6aydbgp"; depends=[anytime dplyr ellipsis generics lifecycle lubridate rlang tibble tidyselect vctrs]; }; + tsibble = derive2 { name="tsibble"; version="1.1.0"; sha256="0m0hjm09y0ja3fb0nnss2692nkr9ck33n95kp6pmzglx389h7m19"; depends=[anytime dplyr ellipsis generics lifecycle lubridate rlang tibble tidyselect vctrs]; }; tsibbledata = derive2 { name="tsibbledata"; version="0.3.0"; sha256="1lz3kx0r8h9d1flp3j0fsllrk4d7m312pk4w4jdv5p4l5f2sqmnx"; depends=[tsibble]; }; tsibbletalk = derive2 { name="tsibbletalk"; version="0.1.0"; sha256="14j1gpimvlz9cgxgl1n68ngkqx4w2ai92782ifrpvc57lqy9cs7v"; depends=[crosstalk dendextend dplyr glue lubridate plotly R6 rlang shiny tsibble vctrs]; }; tsintermittent = derive2 { name="tsintermittent"; version="1.9"; sha256="1mrb6yrsjwj6j40n97sgg42ddvwhjnaiq9k7ka249bbq01gf2975"; depends=[MAPA]; }; @@ -17614,7 +17665,7 @@ in with self; { tvm = derive2 { name="tvm"; version="0.5.0"; sha256="1disznln4xgkr9q6sj978nadbwg43xv28fq3r3zyy6icg4x9h6gs"; depends=[ggplot2 reshape2 scales]; }; tvmediation = derive2 { name="tvmediation"; version="1.0.0"; sha256="16djg3ibn1i68lzwby8242qa90347iq1i9ha4nyzacaf7mjd4ysl"; depends=[dplyr ggplot2 kedd locpol]; }; tvthemes = derive2 { name="tvthemes"; version="1.1.1"; sha256="0j24hhpjab1220bmspd6a0pa2295gpyyrcxs1rxjnsr5vgn90fcq"; depends=[extrafont ggplot2 glue magick scales]; }; - twang = derive2 { name="twang"; version="2.4"; sha256="1d6ql65yymy02jq8xqkkfr5xc72scc2pm87346l9gzqc1sqfi523"; depends=[data_table gbm ggplot2 lattice latticeExtra MatrixModels survey xgboost xtable]; }; + twang = derive2 { name="twang"; version="2.5"; sha256="1raczkxbkikwx9gi4p8nzgazqxa41ilpqvfjc07nwkvyqlkmadgw"; depends=[data_table gbm ggplot2 lattice latticeExtra MatrixModels survey xgboost xtable]; }; twangContinuous = derive2 { name="twangContinuous"; version="1.0.0"; sha256="0bn1i9nid97irn820591ml3556bbmg6pw2qhm9k9vqgnqmnhcfnq"; depends=[gbm lattice Rcpp survey xtable]; }; twangMediation = derive2 { name="twangMediation"; version="1.0"; sha256="0fkj94r6ca59kziknv8pgr4lklxyylfabvhkc3swbmg3cqix3jda"; depends=[gbm gridExtra lattice latticeExtra survey twang]; }; twangRDC = derive2 { name="twangRDC"; version="1.0"; sha256="03z2c18nq6iwwb3si7wjc56npdyray3xsy6k6ifvbalib2ibv2f1"; depends=[data_table ggplot2 MatrixModels xgboost]; }; @@ -17639,10 +17690,11 @@ in with self; { typed = derive2 { name="typed"; version="0.0.1"; sha256="096rzsxjdycf55jx33cxk1284rzb2vcxvp298y4q6v9x0w36php3"; depends=[waldo]; }; typehint = derive2 { name="typehint"; version="0.1.2"; sha256="1n37qgphzf7lckrgfc8w3fq82zrjcvadx034qx8hrmbh4dynsl2s"; depends=[crayon rlist stringr]; }; types = derive2 { name="types"; version="1.0.0"; sha256="01shcin8wjbhbmzl979fj3008xqxssw90g3bjg42cnjxkmnaql59"; depends=[]; }; - tzdb = derive2 { name="tzdb"; version="0.1.2"; sha256="1sl8nacx2i1h9vcvggiyzwd2zwvgrvfvsv3xa9072br62gkpay2c"; depends=[cpp11]; }; + tzdb = derive2 { name="tzdb"; version="0.2.0"; sha256="1afmav7s29fb5cd920h6vrzg9cvc4jsidfalxpvhlh1b8mfr0df3"; depends=[cpp11]; }; tzupdater = derive2 { name="tzupdater"; version="0.1.2"; sha256="0s1simvn76m569iq24qb3w6xli0202cjf1jr3a4qy58fs4sda2kv"; depends=[]; }; u5mr = derive2 { name="u5mr"; version="0.1.1"; sha256="16znlmxanhg1m6fq28z62jv033fxgr4njzz50hgskprvgvx8svkj"; depends=[lifecycle]; }; uCAREChemSuiteCLI = derive2 { name="uCAREChemSuiteCLI"; version="0.2.0"; sha256="1nccgkxv57inhgvgmhwm4fr8cp28sj8n83za5gam9xx1f42mzsqk"; depends=[ChemmineR usethis]; }; + uFTIR = derive2 { name="uFTIR"; version="0.1.4"; sha256="1blgwn6i0dadmr7vml6rbniv103mgr9hgx2dwgcxbagfyv00ah24"; depends=[raster Rcpp RcppArmadillo sp]; }; uGMAR = derive2 { name="uGMAR"; version="3.4.0"; sha256="1n8ishsldfmqdbxz719gakrngrqr9bj7fzddq2ri86yj9krfgas1"; depends=[Brobdingnag gsl pbapply]; }; uHMM = derive2 { name="uHMM"; version="1.0"; sha256="1516ipadxi7rc1dbinr5rva2fbcr5i2zg3rlli5wy7r6naf8fzzl"; depends=[chron class cluster clValid corrplot FactoMineR HMM tcltk2 tkrplot]; }; uaparserjs = derive2 { name="uaparserjs"; version="0.3.5"; sha256="0v24smgsz1p2wa23mc2llx7dycwmgf7zyxdhwxgwplabpmy3xzhl"; depends=[progress V8]; }; @@ -17713,7 +17765,7 @@ in with self; { untb = derive2 { name="untb"; version="1.7-4"; sha256="1i7m4vfslsix98dwx4jlrsldm7fhhfp25gr7aapcxqxms7ryaby6"; depends=[Brobdingnag partitions polynom]; }; unusualprofile = derive2 { name="unusualprofile"; version="0.1.0"; sha256="0dasknh8hwbvc530d8i0xfizqxygrlz3w2bdnsgdd9sf84flqajl"; depends=[dplyr ggnormalviolin ggplot2 lavaan lifecycle magrittr patchwork purrr ragg rlang scales simstandard tibble tidyr]; }; unvotes = derive2 { name="unvotes"; version="0.3.0"; sha256="1vfyvwqfbxp29x2a0sqng6l5pkp2hc3hadp95ysnpannnsd6x0jw"; depends=[]; }; - updog = derive2 { name="updog"; version="2.0.2"; sha256="0xyr4kckg185slwrq46j1qp6z0h965zk6yy55zw2h3wd3gm0cbwa"; depends=[assertthat doParallel foreach ggplot2 ggthemes Rcpp RcppArmadillo reshape2]; }; + updog = derive2 { name="updog"; version="2.1.1"; sha256="0d5jimrsl30abi2y6023dvrnwcvygn73rzbk8agrklalg260razx"; depends=[assertthat doFuture doRNG foreach future ggplot2 ggthemes iterators Rcpp RcppArmadillo reshape2]; }; uplift = derive2 { name="uplift"; version="0.3.5"; sha256="11xikfmg6dg8mhwqq6wq9j9aw4ljh84vywpm9v0fk8r5a1wyy2f6"; depends=[coin MASS penalized RItools tables]; }; uplifteval = derive2 { name="uplifteval"; version="0.1.0"; sha256="1gnn40c47rpx40j210bz6fb48d70p6spv3drr8hd5b3vzfz6686c"; depends=[dplyr ggplot2 gridExtra whisker]; }; upsetjs = derive2 { name="upsetjs"; version="1.9.0"; sha256="0xyy3022810yw0yb8n0cn1gaapizyq1vxadj5inrry5azk8a1kig"; depends=[htmlwidgets magrittr]; }; @@ -17738,7 +17790,7 @@ in with self; { usefun = derive2 { name="usefun"; version="0.4.8"; sha256="0jbwfr04y65rlc2aa6483w9qcdqa4bmcx76j4rp9fracfszjb1hg"; depends=[dplyr]; }; usemodels = derive2 { name="usemodels"; version="0.1.0"; sha256="17cnjg7vw3f2jxkqlfvxh6kn891h49waf5k5a5vb4yaa2ay6nhp3"; depends=[cli dplyr purrr recipes rlang tidyr tune]; }; usethat = derive2 { name="usethat"; version="0.3.0"; sha256="0i6nw3vgll6i31l95iflhq88ssw86pmz46jgw8g6k6f58rgnykmc"; depends=[microservices purrr usethis withr]; }; - usethis = derive2 { name="usethis"; version="2.1.0"; sha256="1s40rbr2z9bilsldp8pv5abrr7n0ixyxi2qqbf4hfhs14rhigncy"; depends=[cli clipr crayon curl desc ellipsis fs gert gh glue jsonlite lifecycle purrr rappdirs rlang rprojroot rstudioapi whisker withr yaml]; }; + usethis = derive2 { name="usethis"; version="2.1.3"; sha256="1gwvirp53pa0zychd7d47d56a2vfdzz7l3p61l8m9n270ac7bc1d"; depends=[cli clipr crayon curl desc fs gert gh glue jsonlite lifecycle purrr rappdirs rlang rprojroot rstudioapi whisker withr yaml]; }; usfertilizer = derive2 { name="usfertilizer"; version="0.1.5"; sha256="05zjn39hqjjzzp4v4b1zbqq59205s7k0kikms951h57kbyvjz6vk"; depends=[tidyverse]; }; ushr = derive2 { name="ushr"; version="0.2.3"; sha256="1ygyqgxw849165lpk81f114kgx9015b9a9dngavjy3ffqzrbb41k"; depends=[dplyr ggplot2 tidyr]; }; uskewFactors = derive2 { name="uskewFactors"; version="2.0"; sha256="0ndi5987ak8sa7krgiglsibfg0k7z9j8fg47hg1m8ar0sq4r1yj6"; depends=[MASS MCMCpack mvtnorm tmvtnorm]; }; @@ -17756,7 +17808,7 @@ in with self; { utilsIPEA = derive2 { name="utilsIPEA"; version="0.0.6"; sha256="07avc0j6qkzqmznbydn0zdg743g7g7kn2bcx5n03m3wg0fqyggr7"; depends=[data_table dplyr RCurl stringdist stringr]; }; utiml = derive2 { name="utiml"; version="0.1.7"; sha256="16l64scyipj7plwyv6whv3h040sgvzxx43jhjxyhrcdci4pqwh94"; depends=[mldr ROCR]; }; utr_annotation = derive2 { name="utr.annotation"; version="1.0.4"; sha256="0lldkd5fw86qxngjfvigmkdzynz0712wsk9p51xliqlavivvnpny"; depends=[AnnotationFilter AnnotationHub BiocGenerics biomaRt Biostrings data_table doParallel dplyr ensembldb foreach GenomicFeatures GenomicRanges IRanges keras readr rtracklayer stringr tidyr vcfR xml2]; }; - uuid = derive2 { name="uuid"; version="0.1-4"; sha256="0gm9ii7ncvllxbvyk6srsiinjmqyj7lmh84w43x4nhqpvafj9q4q"; depends=[]; }; + uuid = derive2 { name="uuid"; version="1.0-2"; sha256="0yiqlrvsh93k361a89gn6jrnlp6gicnil733if0kw4lqw8zimv8b"; depends=[]; }; uwo4419 = derive2 { name="uwo4419"; version="0.3.0"; sha256="0hk5qhyarjxz7ngj5ak37vx0rak6xv0hfb4sdrsbci3kv5fqijv7"; depends=[DescTools dplyr ggplot2 gmodels haven magrittr psych RColorBrewer rio tibble tidyr]; }; uwot = derive2 { name="uwot"; version="0.1.10"; sha256="08vxh085wnrxgwy35ksb4cr7ccjvd98pyr2zlgarqryfgc1bdqbf"; depends=[dqrng FNN irlba Matrix Rcpp RcppAnnoy RcppProgress RSpectra]; }; vICC = derive2 { name="vICC"; version="1.0.0"; sha256="13lcs7wwj1xfbjf3q7r8ssf00jg5hr1vjp2pyw0r42iz7mx47xjv"; depends=[coda ggplot2 nlme Rdpack rjags]; }; @@ -17792,7 +17844,7 @@ in with self; { varImp = derive2 { name="varImp"; version="0.4"; sha256="1bxlfqxi8iiv6raawl9668yhlmbak96ahd0ljzwrilnciqbclc2b"; depends=[measures party]; }; varSel = derive2 { name="varSel"; version="0.2"; sha256="05dk2s4lzd4sxrwsfs2yqsj08qrdrfwx1fs07nb9a8sd0in6vlpj"; depends=[]; }; varSelRF = derive2 { name="varSelRF"; version="0.7-8"; sha256="0h49rl1j13yfh97rsfsyh9s2c4wajny4rzms2qw77d0cavxqg53i"; depends=[randomForest]; }; - varTestnlme = derive2 { name="varTestnlme"; version="1.1.0"; sha256="0zg88lapxik6imvhla14gwk4l025hhp1jrzkqwgv8510fnr130k9"; depends=[alabama anocva corpcor doParallel foreach lme4 lmeresampler Matrix matrixcalc merDeriv msm mvtnorm nlme quadprog saemix]; }; + varTestnlme = derive2 { name="varTestnlme"; version="1.1.1"; sha256="02i15pr6jaanqb3a4vbpsgd7zkgcmkgmdsf6cbkx6mh0zib7mpj3"; depends=[alabama anocva corpcor doParallel foreach lme4 lmeresampler Matrix merDeriv msm mvtnorm nlme quadprog saemix]; }; varband = derive2 { name="varband"; version="0.9.0"; sha256="16z66rx7xq5zan8pnw100c9r5syw1ml4hgzi9mch52aia23v21p9"; depends=[Rcpp RcppArmadillo]; }; varbin = derive2 { name="varbin"; version="0.2.1"; sha256="0gcynwc0vx7qlp3z0pcc4i7mjlnxkwy8ydxz2wr244fw32qgp4kq"; depends=[rpart]; }; varbvs = derive2 { name="varbvs"; version="2.5-16"; sha256="0pji7vqpbih01y7n0q6zpxhfszznzig4z3hmmpr4jqpdplv13x8d"; depends=[lattice latticeExtra Matrix nor1mix Rcpp]; }; @@ -18000,7 +18052,7 @@ in with self; { wbsd = derive2 { name="wbsd"; version="1.0.0"; sha256="16jhimsq8symf6f2awczqkaqkdmlkzhmgk01iimhkvqlx8g2v219"; depends=[Rcpp RcppEigen]; }; wbstats = derive2 { name="wbstats"; version="1.0.4"; sha256="1va3lrksr5zg4k729xvbh176f8zcp9vfrvwxcp04znyh1rvmh6vz"; depends=[dplyr httr jsonlite lifecycle lubridate magrittr readr rlang stringr tibble tidyr]; }; wbsts = derive2 { name="wbsts"; version="2.1"; sha256="07h3wqmb9ya878fwdj49r0npks0pnd3jlnzri1cmf27c691hwka4"; depends=[mvtnorm Rcpp wavelets]; }; - wcde = derive2 { name="wcde"; version="0.0.2"; sha256="0jd7ffj0w3c200zrg3garb4ifpzj784j164vzc00brs80lnlnb57"; depends=[countrycode dplyr forcats lemon magrittr progress purrr readr stringr tibble tidyr tidyverse]; }; + wcde = derive2 { name="wcde"; version="0.0.3"; sha256="0nj3p2wbx2canpn1wfm6jw8p5ymwfyihvyy8hm9svmw5xk10kir8"; depends=[countrycode dplyr forcats magrittr progress purrr readr stringr tibble tidyr]; }; wcep = derive2 { name="wcep"; version="1.0.0"; sha256="1hpakygvh3b64i5hwkriwq5g8vnvghvgdj0jn9m59j43050k32cy"; depends=[coin dplyr progress tidyr]; }; wdm = derive2 { name="wdm"; version="0.2.2"; sha256="1pidlfp67x3wnmkp0qgna4vz29qx09xsy7gfbqzrjqkdi7q1dihi"; depends=[Rcpp]; }; wdman = derive2 { name="wdman"; version="0.2.5"; sha256="1yf41lsrr9dbf5n4f5hv9mlmzl736fhnp9gxkm2g9apws6gsig02"; depends=[assertthat binman processx semver yaml]; }; @@ -18078,9 +18130,9 @@ in with self; { wildviz = derive2 { name="wildviz"; version="0.1.2"; sha256="03vhacaxp5fahq5afcf1q0qvmndpqc6a63pnins7h3p8ryvlpx14"; depends=[DBI dplyr ggplot2 ggthemes httr jsonlite lubridate plotly purrr rnoaa RSQLite shiny shinythemes tibble tidyr]; }; wilson = derive2 { name="wilson"; version="2.4.2"; sha256="050hi6rigs024is1ry0yymqapgqfhzpp0ghk5ya028k71k22lksx"; depends=[circlize colourpicker ComplexHeatmap data_table DESeq2 DT factoextra FactoMineR ggplot2 ggrepel gplots heatmaply log4r openssl plotly plyr R6 RColorBrewer reshape rintrojs rje rjson RJSONIO scales shiny shinycssloaders shinydashboard shinyjs shinyWidgets viridis zip]; }; winRatioAnalysis = derive2 { name="winRatioAnalysis"; version="0.1.0"; sha256="1msvc06bfzw9clinxbvr5fdw38dff0c0xii46182nwnk5kj0libr"; depends=[data_table JM Matrix MLEcens mvtnorm nlme plyr pssm survival]; }; - winch = derive2 { name="winch"; version="0.0.6"; sha256="1mjkbji4618f4sf4hj2lsc6r62pjlvzsvncql9ihcjj52mih9j29"; depends=[procmaps]; }; + winch = derive2 { name="winch"; version="0.0.7"; sha256="0h9xf4qpc1xk04q92dn4n1pjvlwz2sxg0rcv6nkwyp9qj67m6h88"; depends=[procmaps]; }; windAC = derive2 { name="windAC"; version="1.2.6"; sha256="0yx0jiz3c4slv366sic01k8l460idh4n6a797biy7wyrp6jj241x"; depends=[mvtnorm sf]; }; - windex = derive2 { name="windex"; version="2.0.2"; sha256="1zcxddf9dfkjdrlg5j2n34nmpia5vhw2s0hb28pf3wf4m1z2vrf9"; depends=[ape geiger phangorn scatterplot3d]; }; + windex = derive2 { name="windex"; version="2.0.3"; sha256="063lhxpa8gwkaxa5p61dac239s6b11mv53d8dcah5h1q04inshm0"; depends=[ape geiger phangorn scatterplot3d]; }; windsoraiR = derive2 { name="windsoraiR"; version="0.1.2"; sha256="1smd3zw5ra1fba6mds3diadcmbw59jlvmrvfzzi4fss91wv50jql"; depends=[jsonlite]; }; winfapReader = derive2 { name="winfapReader"; version="0.1-3"; sha256="1g5z9kg5ws9cdixky2y0c7dw3f7lmh3ykjxrh3jjmkm75gzgs7p0"; depends=[lubridate]; }; wingui = derive2 { name="wingui"; version="0.2"; sha256="0yf6k33qpcjzyb7ckwsxpdw3pcsja2wsf08vaca7qw27yxrbmaa3"; depends=[Rcpp]; }; @@ -18135,7 +18187,7 @@ in with self; { wql = derive2 { name="wql"; version="0.4.9"; sha256="0m16l807mhcjkbqhlzhc24pw4hl78fjyykiszlg337x3qs803fg2"; depends=[ggplot2 reshape2 zoo]; }; wqs = derive2 { name="wqs"; version="0.0.1"; sha256="14qaa9g9v4nqrv897laflib3wwhflyfaf9wpllmbi5xfv9223rcg"; depends=[glm2 Rsolnp]; }; wrGraph = derive2 { name="wrGraph"; version="1.3.0"; sha256="1zw9c3dl5lwksggvxsch1a9brzy7a5m6yi513h4fxf31njpc5s7g"; depends=[lattice RColorBrewer wrMisc]; }; - wrMisc = derive2 { name="wrMisc"; version="1.6.2"; sha256="1wpd1pa19b5ly4fixsfavr7rpsq8a0bcw4r6wbn5cwmdl66dsknp"; depends=[MASS]; }; + wrMisc = derive2 { name="wrMisc"; version="1.7.0"; sha256="0yhrgybvhi500m8hfcf52id3xfvbmgjl6kfg0qa7ll4bfjvzrfqx"; depends=[MASS]; }; wrProteo = derive2 { name="wrProteo"; version="1.4.3"; sha256="1gqmj8lmc37brbzlzci37zpn9v6shs4ahy65kbx25zgdw19bdd1n"; depends=[knitr limma wrMisc]; }; wrTopDownFrag = derive2 { name="wrTopDownFrag"; version="1.0.2"; sha256="1rdg6rzjz2h514i3c8z89mvj2j3h1s7rr5fry2mq3xvrwrgd3738"; depends=[wrMisc wrProteo]; }; wrangle = derive2 { name="wrangle"; version="0.5.2"; sha256="1b6qgwdjvwbrarp9ylgkb5ia1p5a5g7ws0jyqrwc6hii8z5yj2qb"; depends=[dplyr lazyeval magrittr rlang tidyr]; }; @@ -18263,7 +18315,7 @@ in with self; { zeallot = derive2 { name="zeallot"; version="0.1.0"; sha256="1sd1igcfnv27pa3bqxlbyxchi562h7grnjg1l7wxx3bwr49i57s3"; depends=[]; }; zebu = derive2 { name="zebu"; version="0.1.3.0"; sha256="1rlcrvhic110h8r0mqwhkzq8w566jfymxpcwv63bvs7fd8j98vsv"; depends=[foreach ggplot2 iterators plyr reshape2]; }; zeitgebr = derive2 { name="zeitgebr"; version="0.3.5"; sha256="1h2zx3ah1xdyyag40ragrv7gvpnlzqmappbnjp971dn9khqdxfqs"; depends=[behavr data_table lomb pracma WaveletComp]; }; - zen4R = derive2 { name="zen4R"; version="0.5"; sha256="074isxa7i4867cb849ibiw67l8j1f201j4ys7y7w7lb87gyaf8x2"; depends=[httr jsonlite keyring R6 xml2]; }; + zen4R = derive2 { name="zen4R"; version="0.5-1"; sha256="08h1f5jld8qgn96d1ckd6g7hbkcm8djr1jjd7x6ji396sbf9jvcw"; depends=[httr jsonlite keyring R6 xml2]; }; zendeskR = derive2 { name="zendeskR"; version="0.4"; sha256="06cjwk08w3x6dx717123psinid5bx6c563jnfn890373jw6xnfrk"; depends=[RCurl rjson]; }; zenplots = derive2 { name="zenplots"; version="1.0.4"; sha256="1r105ay0p00wfly8z54dg18i1fq7ppvxzri49i7zrlimqawzv19s"; depends=[graph loon MASS PairViz]; }; zeroEQpart = derive2 { name="zeroEQpart"; version="0.1.0"; sha256="1n24nqyl0irpyspwx4b73xy228a84aa8zsn9fcf2lrlni5vyzmm0"; depends=[MASS ppcor]; }; @@ -18306,14 +18358,12 @@ in with self; { AnimalAPD = derive2 { name="AnimalAPD"; version="1.0.0"; sha256="1csa6disrg11hpxg4zw0jay15srw9lsgbhl1xgl7hpdr3nqsv3s7"; depends=[activityGCMM brms circular ggplot2 gridExtra loo overlap]; broken = true; }; BNN = derive2 { name="BNN"; version="1.0.2"; sha256="13h9xqfdqnc9d8brx1xlmvb4nrkpwncwjz98y7i3wijih85wkikd"; depends=[mvtnorm]; broken = true; }; BayesPostEst = derive2 { name="BayesPostEst"; version="0.3.1"; sha256="0pfildzmqdwnj6h2k692ym9i37lwc65jqgjcx6h3cz8spcmzxm8y"; depends=[carData caTools coda dplyr ggplot2 ggridges HDInterval reshape2 rlang ROCR texreg tidyr]; broken = true; }; - CoordinateCleaner = derive2 { name="CoordinateCleaner"; version="2.0-18"; sha256="0gdvna1a43p419hrs78afas9w7xhiqaqr4yivbkjms3l9cr5zb87"; depends=[dplyr geosphere ggplot2 raster rgbif rgdal rgeos rnaturalearth sp tidyselect]; broken = true; }; CytobankAPIstats = derive2 { name="CytobankAPIstats"; version="2.0"; sha256="0xczcgaxd8dv6fd1j5c8y4il852lq8859d1y16sxs8a3gqn9fbz2"; depends=[CytobankAPI pheatmap shiny shinyFiles xlsx]; broken = true; }; - DMCfun = derive2 { name="DMCfun"; version="2.0.0"; sha256="130j380sqy8p0yiw0x3ax3krh0n178bad1v1y9rsg6i973m654am"; depends=[BH DEoptim dplyr pbapply Rcpp shiny tidyr]; broken = true; }; DNH4 = derive2 { name="DNH4"; version="0.1.11"; sha256="15a1hq8f8nz200apbm28dwyphl18rhicmf7irsdj0z1n1j898c44"; depends=[httr rvest tibble tidyr xml2]; broken = true; }; + EGAnet = derive2 { name="EGAnet"; version="0.9.8"; sha256="1mdvp67wnbgmdhdwlgq8p20vhbv4m3fyvdw3zrcxy9zd8mchjydh"; depends=[dplyr GGally glasso igraph lavaan Matrix network NetworkToolbox qgraph semPlot]; broken = true; }; EPP = derive2 { name="EPP"; version="0.3.3"; sha256="0wwiz9i6azy60vhgqs0d4pwd2w5gxp8wj724lw6zmldnk3n6vb0k"; depends=[assertthat curl deldir dplyr flexclust leaflet leaflet_extras maptools nngeo osrm plyr rgdal rgeos sf sp tibble]; broken = true; }; EpiSignalDetection = derive2 { name="EpiSignalDetection"; version="0.1.1"; sha256="04bagnx9fs0r3167hmwgc389fl5hq7l4j6kdjjmi360vcaimx9qi"; depends=[dplyr DT ggplot2 ISOweek knitr pander rmarkdown shiny surveillance]; broken = true; }; Eunomia = derive2 { name="Eunomia"; version="1.0.1"; sha256="06a42qsf3nx1pbynikkdvmbhh1rmgnfmiggdn86b3a0ij6cq0p2r"; depends=[DatabaseConnector RSQLite SqlRender]; broken = true; }; - FORTLS = derive2 { name="FORTLS"; version="1.0.3"; sha256="0awc485r5vzxmd966gp4qrjqmiv4mvq7bfd5sa9s75vdvzcwvxf1"; depends=[dbscan Distance ggvoronoi htmlwidgets lidR moments plotly progress raster Rcpp RcppEigen scales sp tidyr vroom]; broken = true; }; GEVACO = derive2 { name="GEVACO"; version="1.0.0"; sha256="0rslnxqbj1pbbnp849pdn6l9dyfib9w19a1q3fw7kdjfir76gk6a"; depends=[nlme RLRsim]; broken = true; }; GLIDE = derive2 { name="GLIDE"; version="1.0.2"; sha256="1z5h8br6aig24g5gsh8h6npm269id3h5gjjyf5avs4v08b51rpcv"; depends=[doParallel foreach MASS]; broken = true; }; GPSeqClus = derive2 { name="GPSeqClus"; version="1.0.0"; sha256="1zxihac4hd2b1vvrb36v2c6lhn8pfs8q4zgzi2flyb0dnb5di09r"; depends=[geosphere leaflet leaflet_extras plotKML plyr purrr rgdal sp spacetime suncalc]; broken = true; }; @@ -18326,9 +18376,11 @@ in with self; { LexisNexisTools = derive2 { name="LexisNexisTools"; version="0.3.4"; sha256="08v160s9znvv808wcw7319p3dk189bmpypg2wkdzzgkdby4gj3fr"; depends=[data_table pbapply quanteda quanteda_textstats stringdist stringi tibble]; broken = true; }; MAFDash = derive2 { name="MAFDash"; version="0.1.0"; sha256="0xk9zbdwmm597jck8v3w76d2s72k6amv8ya94y7jbnik60ndwnda"; depends=[bsplus canvasXpress circlize ComplexHeatmap crosstalk data_table dplyr DT ensurer flexdashboard GenomicRanges ggbeeswarm ggplot2 htmltools IRanges knitr maftools pheatmap plotly RColorBrewer reshape2 rmarkdown TCGAbiolinks]; broken = true; }; MHTcop = derive2 { name="MHTcop"; version="0.1.1"; sha256="1mr8y8brsi37b5qx3fqm0bj90dgknzzwhxfmvyd9kxbxh19whgxq"; depends=[copula matrixStats MCMCpack mvtnorm stabledist]; broken = true; }; + MIMSunit = derive2 { name="MIMSunit"; version="0.11.0"; sha256="03mzjf86qs9kqpqn9vqspfv4jkx52s3yvgr3nk1p28w5qhdi2nq5"; depends=[caTools dplyr dygraphs ggplot2 lubridate magrittr matlab plyr R_utils RColorBrewer readr shiny signal stringr tibble xts]; broken = true; }; MLPA = derive2 { name="MLPA"; version="1.10.0"; sha256="1w8vhvs8ri8iyh068g59chz3mn0wapa4jr1wmhjlzwa2c651q2cx"; depends=[]; broken = true; }; MRMR = derive2 { name="MRMR"; version="0.1.4"; sha256="0dgbhlynaaka7mdzl6igwgcdzvy6cm2y8mbxaf9pfla8w3z8y0lq"; depends=[ggplot2 lmtest lubridate plyr reshape2]; broken = true; }; MVT = derive2 { name="MVT"; version="0.3"; sha256="0vinlv3d5daf8q7pd9xgs51nxz2njgdba5750vygmv883srlzi9d"; depends=[]; broken = true; }; + MedianaDesigner = derive2 { name="MedianaDesigner"; version="0.5"; sha256="1nd6sgqxx76yz6fyvdlvqvk7bg7dq8w4laamkabnzha35fsz567y"; depends=[devEMF flextable mvtnorm officer Rcpp RcppEigen RcppNumerical shiny shinydashboard shinyMatrix]; broken = true; }; MetaboLouise = derive2 { name="MetaboLouise"; version="1.0.0"; sha256="1agcp520in0wpxv3x2jvvmv61hasazdymnvjhzl66nwv8lifl98z"; depends=[igraph]; broken = true; }; MoBPS = derive2 { name="MoBPS"; version="1.6.54"; sha256="1r15ag7c56bi54mby8kxb74l5v4qihdj7cr3i5vg8p5qpmvsff8m"; depends=[]; broken = true; }; Myrrix = derive2 { name="Myrrix"; version="1.2"; sha256="05x2h4ppjhfm0wlpwyp8ycjg59qj3gv0yqdilxrzb1lkrzln92xb"; depends=[Myrrixjars rJava]; broken = true; }; @@ -18338,56 +18390,69 @@ in with self; { OligoSpecificitySystem = derive2 { name="OligoSpecificitySystem"; version="1.3"; sha256="17mspf1ph2ybv046zckykfdcbrsiz40hrs6ib5mpwkfnrvsp1w7l"; depends=[tkrplot]; broken = true; }; OpenMPController = derive2 { name="OpenMPController"; version="0.2-5"; sha256="00hs8v47pr2d726z8izkfrgmayw147hdm16rr9rw1zs3ad216zjj"; depends=[]; broken = true; }; POPdemog = derive2 { name="POPdemog"; version="1.0.3"; sha256="0j83c853ligmw8ag4pb0vj46sfn2w2ynh4wvgkabzs688hxxni8r"; depends=[]; broken = true; }; + Plasmode = derive2 { name="Plasmode"; version="0.1.0"; sha256="1qcni9zdckhsnw616jn7rdfd09kbl5wd4hljdja0w73jz1wd1z14"; depends=[arm epiDisplay foreign gbm glm2 lattice latticeExtra lme4 MASS Matrix mgcv nlme nnet RColorBrewer survey survival twang xtable]; broken = true; }; QuantumClone = derive2 { name="QuantumClone"; version="1.0.0.6"; sha256="1520jgkzp8g7gv7ggqhvlrdnpdyhygqjgsd1my5jq30afdqj6qmp"; depends=[DEoptim doParallel foreach fpc ggplot2 gridExtra NbClust optimx]; broken = true; }; RDFTensor = derive2 { name="RDFTensor"; version="1.3"; sha256="1kfhhn0lb1r61bkgxn7rv1smgk8b7vxbc8y97hdmg5argiywc65i"; depends=[doParallel foreach Matrix pracma]; broken = true; }; RNAsmc = derive2 { name="RNAsmc"; version="0.6.0"; sha256="0q4b24baabzx41zqygy6l2jnyzc4m7knmlnhra4hhc5f5cl5ab8r"; depends=[circlize RRNA]; broken = true; }; + RNRCS = derive2 { name="RNRCS"; version="0.2.5"; sha256="19q78l8mh4701vqvr36vqc87n39s5ivzhiy5lvnxbd4dgibk1jr2"; depends=[ggplot2 magrittr rvest xml2]; broken = true; }; RSCABS = derive2 { name="RSCABS"; version="0.9.5"; sha256="193wbf1v18xv098i6abpglb239788d9gjzqbn8p3aai0la6y1pk3"; depends=[gWidgets2 gWidgets2RGtk2 R2HTML RGtk2]; broken = true; }; RefFreeEWAS = derive2 { name="RefFreeEWAS"; version="2.2"; sha256="1aya34iz5v3xfpj86x9ab998m7fdwl138ly007mgdayacvqi4a6y"; depends=[quadprog]; broken = true; }; SDLfilter = derive2 { name="SDLfilter"; version="2.1.1"; sha256="1lyigd578ngsmqpkbbf6jv7lnffnccydlcd6vk9nvvynnx5x8r5a"; depends=[data_table dplyr ggmap ggplot2 ggsn gridExtra lubridate maps plotKML plyr pracma raster sp trip]; broken = true; }; SEAA = derive2 { name="SEAA"; version="0.9.6"; sha256="0f1j8pq3a0liyjxjlc91v8nm5y0fr8fq7qlhdayvkf1fx96srqs2"; depends=[clusterProfiler ggforce ggplot2 ggpubr ggrepel gridExtra org_Hs_eg_db org_Mm_eg_db reshape2 Rsubread tidyr]; broken = true; }; StatCharrms = derive2 { name="StatCharrms"; version="0.90.96"; sha256="1451aj1476qjpmxhpbgd8g55i7rp2msml64xsiy25h7x9g6d9w05"; depends=[cairoDevice car clinfun coxme gWidgets2 gWidgets2RGtk2 lattice multcomp nlme R2HTML RGtk2 RSCABS survival]; broken = true; }; TLBC = derive2 { name="TLBC"; version="1.0"; sha256="08w187akbhfbz6nrrf7avf02lrhgj7bbrjmim9gkh4wlbjhzvw67"; depends=[caret HMM randomForest signal stringr]; broken = true; }; + TNRS = derive2 { name="TNRS"; version="0.1.0"; sha256="146shb1dg4iyaanrdr1l8nqpiqf05la1ai34w74z6wsd1mpcchqy"; depends=[jsonlite RCurl rjson]; broken = true; }; TrafficBDE = derive2 { name="TrafficBDE"; version="0.1.0"; sha256="1lnh9lbjxaradivnd1dkd2szggjh2r4v7klpyxb862dxsmdxxrqw"; depends=[caret data_table dplyr lubridate neuralnet RCurl zoo]; broken = true; }; Tushare = derive2 { name="Tushare"; version="0.1.3"; sha256="12aabkwlifc82yiym3yijpfpjhmhfwpw8mz4fb11qm6n4igr1yhg"; depends=[data_table forecast httr tidyverse]; broken = true; }; TwoPhaseInd = derive2 { name="TwoPhaseInd"; version="1.1.1"; sha256="0xsqiq4x7vmhif9j8zi1smbchwm4fsbgb10i4vxi0biijybizk9z"; depends=[survival]; broken = true; }; UKB_COVID19 = derive2 { name="UKB.COVID19"; version="0.1.1"; sha256="0626cix3v5j2nflqy6g0dc2101pif3p8x3r62d5kmn1si5p171gn"; depends=[data_table dplyr here magrittr questionr tidyverse]; broken = true; }; UncertainInterval = derive2 { name="UncertainInterval"; version="0.7.0"; sha256="1lywwjkbmlbxhp2ahmsw2f47i0p848cky7xx1lxrg5ydfzq9kzl5"; depends=[car MASS nloptr psych reshape2 shiny zoo]; broken = true; }; + XPolaris = derive2 { name="XPolaris"; version="1.0.2"; sha256="1l05svscgkv9bzkawi2kp9zhchrhxxma3271b828j34pkrnnmq5m"; depends=[curl dplyr ggplot2 httr magrittr purrr raster sf tidyr]; broken = true; }; adoption = derive2 { name="adoption"; version="0.6.4"; sha256="1xjkvj1ys2xmjgswqfsrry27zyqcc9hk9khl0j4s72gcc8az8sz6"; depends=[quadprog RandomFieldsUtils tkrplot]; broken = true; }; + aghq = derive2 { name="aghq"; version="0.2.1"; sha256="0c4yk2vcycxryrs0g5jnfsbwr0f2nwq660mmx3vsfsdqml2qdv5w"; depends=[Matrix mvQuad polynom rlang]; broken = true; }; amber = derive2 { name="amber"; version="1.0.3"; sha256="0kc7g5rb0wrs1id1k0qay56063gpffwvcll38983b1l3k215mxiv"; depends=[classInt doParallel foreach Hmisc latex2exp ncdf4 raster rgdal rgeos scico sp viridis xtable]; broken = true; }; anominate = derive2 { name="anominate"; version="0.6"; sha256="01p2qkqf88bzhwywyass5r8dwg2ycflmkbzmsps7fzy0kv3xyb02"; depends=[coda MCMCpack pscl wnominate]; broken = true; }; aptg = derive2 { name="aptg"; version="0.1.1"; sha256="0mdhgc0jrl2za3k2awm92vky2ghcssqq1x2h57ns9b17lwdrsdl4"; depends=[ape brranching phytools taxize xml2]; broken = true; }; artemis = derive2 { name="artemis"; version="1.1.1"; sha256="1v875xn0mvw7p7jdp6d3hpc4cp8yq2aq0b80rq1c619n9rkjq4ks"; depends=[BH ggplot2 lme4 loo Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; broken = true; }; + aspline = derive2 { name="aspline"; version="0.1.0"; sha256="1xywp471ly6f0n88lwhpwlg54fizdkjxksli9c60vbi8r56n46mr"; depends=[dplyr fda ggplot2 magrittr Matrix mgcv pryr pspline Rcpp reshape2 rlang splines2 tidyr]; broken = true; }; ausplotsR = derive2 { name="ausplotsR"; version="1.2.6"; sha256="1vnf1rhg5frv1kc5bdssvljww6bw2q1cj29y4304851fifk8l502"; depends=[betapart curl ggplot2 gtools httr jose jsonlite mapdata maps maptools plyr R_utils simba sp vegan]; broken = true; }; batchr = derive2 { name="batchr"; version="0.0.2"; sha256="0fkrv6dlyla7bbl00f16lypnz5idyjz9kdqslgbx3pnfwx5hngwx"; depends=[chk cli furrr hms hmstimer yesno]; broken = true; }; biblio = derive2 { name="biblio"; version="0.0.2"; sha256="1yx90cmkcm5vran3n0p8l3hz9sqny7bhzgvnlsa8f4fddh0ah78p"; depends=[stringr yamlme]; broken = true; }; binomialMix = derive2 { name="binomialMix"; version="1.0.1"; sha256="1ak3h0lgjmrv9miwn7fl6jvcp8xdld53swjz71q67q999s42np0m"; depends=[dplyr gmp lubridate MASS rlang Rmpfr stringr]; broken = true; }; + boostr = derive2 { name="boostr"; version="1.0.0"; sha256="123ag8m042i1dhd4i5pqayqxbkfdj4z0kq2fyhxfy92a7550gib2"; depends=[foreach iterators stringr]; broken = true; }; caliver = derive2 { name="caliver"; version="2.0.0"; sha256="04qa3zrk70c8ak70djfh23jyfxs8293s8wzkk6cs0nyrknhaxzzj"; depends=[ggplot2 lubridate ncdf4 raster rworldmap]; broken = true; }; cjbart = derive2 { name="cjbart"; version="0.1.0"; sha256="1lpqwm6py0xwmcj87crk9ivd96wy3kzfhkinv064d6dx5n4m4fax"; depends=[BART ggplot2 rlang tidyr]; broken = true; }; + compstatr = derive2 { name="compstatr"; version="0.2.1"; sha256="0pg8yacfb7jvg9xr0gmis8a4g339isd77h6wr8dd6w900q47xac0"; depends=[dplyr fs httr janitor lubridate purrr readr rlang rvest sf stringr tibble tidyr xml2]; broken = true; }; connections = derive2 { name="connections"; version="0.1.1"; sha256="08fbyzyp26nh1a46p0zi3q0wzgl0cd9bjp4lhw2bwv1bv7yayamp"; depends=[DBI dbplyr dplyr pins rscontract uuid]; broken = true; }; contextual = derive2 { name="contextual"; version="0.9.8.4"; sha256="0lww36nymg2cla83jdvl7a42cwn0il20apciz0ddplq8rw2i0a91"; depends=[data_table doParallel foreach Formula iterators itertools R_devices R6 rjson]; broken = true; }; cuml = derive2 { name="cuml"; version="0.2.1"; sha256="1dmk1gvvzkwfra63qslax9cgqjbsiqam5wcjl955wpb0wdqpa54k"; depends=[ellipsis hardhat magrittr parsnip Rcpp rlang]; broken = true; }; danstat = derive2 { name="danstat"; version="0.1.0"; sha256="1wb4v4s9qc7qna7jgd1kk0xvyaqmxhnmjvr5wlk5jjl355lhjxbc"; depends=[httr jsonlite readr]; broken = true; }; + dataReporter = derive2 { name="dataReporter"; version="1.0.0"; sha256="12rwjd46h35cydvfx5qhb4rssqpm94b628zr06gy9nhwydnajn5x"; depends=[ggplot2 gridExtra haven htmltools magrittr pander rmarkdown robustbase stringi whoami]; broken = true; }; diffman = derive2 { name="diffman"; version="0.1.1"; sha256="08b4kqxfg8pmyl2xg8flb581s9wnkdcy5rrmrxp8a89y265qmirx"; depends=[data_table dplyr igraph Matrix progress Rcpp sf tidyverse]; broken = true; }; dpa = derive2 { name="dpa"; version="1.0-3"; sha256="0dmwi68riddi1q4b10c12wx6n7pqfmv30ix5x72zpdbgm72v343h"; depends=[igraph sem]; broken = true; }; dynamicGraph = derive2 { name="dynamicGraph"; version="0.2.2.6"; sha256="1xnsp8mr3is4yyn0pyrvqhl893gdx2y1zv8d2d55aah2xbfk0fjj"; depends=[ggm]; broken = true; }; dynatopmodel = derive2 { name="dynatopmodel"; version="1.2.1"; sha256="0lpfhj69bvagqzzg2kjqvn9xx8f93ii34flrrns20z3bxla6gds9"; depends=[deSolve lubridate maptools raster rgdal rgeos sp topmodel xts zoo]; broken = true; }; elo = derive2 { name="elo"; version="2.1.1"; sha256="1i6qcw2plw12v065142kx58d911zr1gcsd1xic152zxvh89nmhxx"; depends=[pROC Rcpp]; broken = true; }; endogMNP = derive2 { name="endogMNP"; version="0.2-1"; sha256="0maxcp321ngbxrg0i23nlwhj849v771xahh53367x928ss4f8v7i"; depends=[]; broken = true; }; + evaluator = derive2 { name="evaluator"; version="0.4.3"; sha256="1gccymjb1ad3xw3kmqafchazv9rid6v6c3h8w96ai5b2jh8zlgwk"; depends=[cli crayon dplyr extrafont ggplot2 magrittr mc2d purrr readr readxl rlang rstudioapi scales stringi tibble tidyr vctrs viridis]; broken = true; }; expands = derive2 { name="expands"; version="2.1.3"; sha256="00zb57gmpj86c7rvpqywpn4c5wl51immps935n3hd2fyk73vqljh"; depends=[ape commonsMath flexclust flexmix gplots matlab moments NbClust plyr RColorBrewer rJava]; broken = true; }; + fabisearch = derive2 { name="fabisearch"; version="0.0.3.6"; sha256="0gaw9hk7il4fsc0mklb3pfxl6kg7amydvqar8m2524hcb7ar835z"; depends=[doParallel doRNG foreach NMF reshape2 rgl]; broken = true; }; feedeR = derive2 { name="feedeR"; version="0.0.10"; sha256="1p64c7ibwn6k5k3vsjxrcjr84czild7g8bqw0yv4axk52vk5jfkx"; depends=[digest dplyr lubridate readr stringr tibble xml2]; broken = true; }; fpmoutliers = derive2 { name="fpmoutliers"; version="0.1.0"; sha256="108bp3smk9jnckd5237xly4ywmal03rq1kidq5z61l6zrhc3yfh9"; depends=[arules doParallel foreach Matrix pmml pryr R_utils XML]; broken = true; }; fuzzyreg = derive2 { name="fuzzyreg"; version="0.5.1"; sha256="19ppb1m655z3n7h4wcd5bwjciw4ynjbi883ki50mr5di3zy64n4r"; depends=[limSolve quadprog]; broken = true; }; - garma = derive2 { name="garma"; version="0.9.8"; sha256="07c0pv8dpp0ll6zxx4k60r47nfx7i3iv1ygjq5vvb3had9hcad0f"; depends=[BB crayon dfoptim FKF forecast GA ggplot2 lubridate nloptr pracma pso Rsolnp signal tswge zoo]; broken = true; }; gdmp = derive2 { name="gdmp"; version="0.2.0"; sha256="0fy8x9l6swrb78apwq9d9msz2y8dkfd2fkyp1pkmzxwdb85lmcdm"; depends=[]; broken = true; }; - gen3sis = derive2 { name="gen3sis"; version="1.3"; sha256="1s0214a0fp356fw0mqlddlgsqpw4prkkfhrzdkqkv3nqswcx1x08"; depends=[BH gdistance Matrix raster Rcpp sp stringr]; broken = true; }; gfmR = derive2 { name="gfmR"; version="1.1-0"; sha256="0qzzbcra1fnbp0h31b1as20yhmqmi7p62xrhikj64an9avg9b277"; depends=[faraway nnet]; broken = true; }; + ggguitar = derive2 { name="ggguitar"; version="0.1.1"; sha256="1lmfs54h91gzcxin37v4flkywbq3fs648mm1h9ak03xlj5nagzsi"; depends=[dplyr ggplot2 gridExtra lazyeval readr tibble]; broken = true; }; glinvci = derive2 { name="glinvci"; version="1.1.4"; sha256="0s8qmrqajsrmzp30xgi49n96ks22dxxa0c5psqkw67n66h39njlh"; depends=[ape BB lbfgsb3c numDeriv plyr Rcgmin rlang]; broken = true; }; gorica = derive2 { name="gorica"; version="0.1.1"; sha256="06022nkdqmd653bxi81ks4lq5gx3j9jxbwkx1wjmmj4ph6qabkmn"; depends=[bain lavaan limSolve lme4 MASS mvtnorm quadprog]; broken = true; }; graphscan = derive2 { name="graphscan"; version="1.1.1"; sha256="1dgjb0grdymhimdgwnddjcivgy2i9r1i1nni4v9mx0447skcahk9"; depends=[ape rgl snowfall sp]; broken = true; }; happybiRthday = derive2 { name="happybiRthday"; version="0.0.1"; sha256="0rrvi5kx09p74xwxvqcwibbh4qjlk4jxb89grx74chjxk9ak2yv8"; depends=[data_table dplyr gh lubridate tidyr]; broken = true; }; + hdpGLM = derive2 { name="hdpGLM"; version="1.0.0"; sha256="04mn0cbbx66218rsd273yh29h28f1xl8k0whwlyn6hrg035mlk0x"; depends=[coda data_table dplyr formula_tools ggjoy ggplot2 ggpubr ggridges Hmisc isotone LaplacesDemon magrittr MASS MCMCpack mvtnorm purrr questionr Rcpp RcppArmadillo rprojroot stringr tibble tidyr tidyverse]; broken = true; }; healthforum = derive2 { name="healthforum"; version="0.1.0"; sha256="13ih00amv9hrpngm6pxc8vzqzhx8c0yqgaprxdcp5li90lg5r3av"; depends=[magrittr purrr rvest stringr tokenizers xml2]; broken = true; }; + hockeyR = derive2 { name="hockeyR"; version="0.1.1"; sha256="1rzm67ib4i7qa0x302g9k5bm5vabg39l1da5brnkkh9fp6v37lb6"; depends=[dplyr glue httr janitor jsonlite lubridate magrittr polite purrr rvest stringr tidyr zoo]; broken = true; }; incadata = derive2 { name="incadata"; version="0.9.1"; sha256="0987zazkp3cxvk88i3yqb70s2i1cg108vc8wyhh2867s3rqdrpgh"; depends=[decoder rvest sweidnumbr xml2]; broken = true; }; ipmisc = derive2 { name="ipmisc"; version="6.0.2"; sha256="1dn815p2k1v371pv5fra6541zwc1hyjzxlx11m8pgfcyrfgmicyk"; depends=[dplyr magrittr rlang tibble tidyr zeallot]; broken = true; }; + jdx = derive2 { name="jdx"; version="0.1.4"; sha256="0jqf0nkdyv9g4rifzlkls0n64fdcma2yphwl478772jlgfmxm2jb"; depends=[rJava]; broken = true; }; jsr223 = derive2 { name="jsr223"; version="0.3.4"; sha256="0rir9v0qhnbl2rgkx1qz2ydj68ba9ccbdzsg6y1acczdhpl03j51"; depends=[curl jdx R6 rJava]; broken = true; }; lass0 = derive2 { name="lass0"; version="1.1.0"; sha256="01fafgyhi3fw8ldjw2gf0z9w1si7il3ailwm197fxmw4wqgys9fl"; depends=[doRNG foreach ismev lpSolve]; broken = true; }; libproj = derive2 { name="libproj"; version="8.1.0-1"; sha256="16mavs0kpbn1lskfgyzgw5ns270kdvvh2991c8w26cyl23zrcys6"; depends=[cpp11 rappdirs]; broken = true; }; @@ -18398,25 +18463,25 @@ in with self; { miraculix = derive2 { name="miraculix"; version="0.9.23"; sha256="0i08v5hq43296k3sa7akpq4h5dmvpkgn7cfpqwdyp0qaxkqk0k0s"; depends=[RandomFieldsUtils]; broken = true; }; mnlogit = derive2 { name="mnlogit"; version="1.2.6"; sha256="0dfwpkl8g7ap5xr48smiv8vdbamd2r1liy9nwpsn0kcsr9cj65n9"; depends=[Formula lmtest mlogit]; broken = true; }; nCal = derive2 { name="nCal"; version="2021.9-12"; sha256="133dpy2rp8sabwdlk0wjxs9rzixzcja73im94qaw26z5xsnaydhf"; depends=[drc gdata gWidgets2 kyotil]; broken = true; }; + ndtv = derive2 { name="ndtv"; version="0.13.1"; sha256="18d51xp62fis63p2prybhigxx03yhbrzs0k1yhh9j21548wzhb2l"; depends=[animation base64 jsonlite MASS network networkDynamic sna statnet_common]; broken = true; }; ntwk = derive2 { name="ntwk"; version="1.0.0"; sha256="1c12c3pq992f02z3ikx17zv2djq9d9ly232ha0j5jswsksqzx024"; depends=[assertthat copCAR ghyp Matrix mvtnorm pracma zoo]; broken = true; }; oc = derive2 { name="oc"; version="1.2"; sha256="0cw1gvz6gk8j718zmywqp03h9cnzn132nwbv45gr00xg2s9h7dk7"; depends=[pscl]; broken = true; }; + occCite = derive2 { name="occCite"; version="0.5.0"; sha256="09y1vqjshrh8mbw1xsmcfrcxy5ccx14gf6p5mfzlwm3ywsi84hcc"; depends=[bib2df BIEN DBI dplyr ggplot2 htmltools httr leaflet lubridate RColorBrewer rgbif rlang RPostgreSQL stringr taxize tidyr viridis waffle]; broken = true; }; pairwiseComparisons = derive2 { name="pairwiseComparisons"; version="3.1.6"; sha256="0aiq8gr33pr5lia6cf6ak7zy5z81am5j5a0py0a2m9ljgmsgmn4s"; depends=[BayesFactor dplyr insight ipmisc parameters PMCMRplus purrr rlang WRS2]; broken = true; }; + pct = derive2 { name="pct"; version="0.9.1"; sha256="0chqvaa8cfv3s3zf940hzca90967raakxndyxcg08acysvfq6fir"; depends=[boot readr sf stplanr]; broken = true; }; pedometrics = derive2 { name="pedometrics"; version="0.7.0"; sha256="0rqldc67yrcg16i5q9wrmfmh3lw3qrfdxwdb4mxkjxx18v4fv737"; depends=[lattice latticeExtra Rcpp]; broken = true; }; - plotKML = derive2 { name="plotKML"; version="0.8-1"; sha256="0a6hrhcsw4zm1y8ksvhf3h9pz0gm0k2fn5r7gsmnxix9p5iv7rkx"; depends=[aqp classInt colorRamps colorspace dismo gstat landmap pixmap plotrix plyr raster RColorBrewer rgdal RSAGA scales sf sp spacetime stars stringr XML zoo]; broken = true; }; pm4py = derive2 { name="pm4py"; version="1.2.7"; sha256="11xbsmsc9pxd98fy28l3nxzhb6c2pwvh1gmm34jnqn0rjbpb2n9i"; depends=[bupaR petrinetR purrr reticulate stringr]; broken = true; }; pmdplyr = derive2 { name="pmdplyr"; version="0.3.3"; sha256="1grnqqydi84hnig1522lv4xbh9ds32wnq7sha7jn1q4186wlz1qa"; depends=[dplyr lubridate magrittr pillar rlang tibble tidyr tidyselect vctrs]; broken = true; }; + podr = derive2 { name="podr"; version="0.0.5"; sha256="135nq0dw1x6ngf6mxy3yds3xsxhaf5rnv1cmhavlrklhdfygc0a4"; depends=[assertthat DBI dplyr lubridate magrittr odbc plogr RPostgres rstudioapi shiny stringr tibble]; broken = true; }; polyglot = derive2 { name="polyglot"; version="0.3.0"; sha256="1mmmdqaq882qys41lmm009ncg9s9h5x1q8psv0v3pwpar0d7vgff"; depends=[magick pins]; broken = true; }; - popEpi = derive2 { name="popEpi"; version="0.4.8"; sha256="1gc7kyik0209pc8mvl6c69lzb3dnkif0mby4l4pq8zfdz73lmi06"; depends=[data_table Epi survival]; broken = true; }; - prioritizr = derive2 { name="prioritizr"; version="7.0.1"; sha256="1902anqfii32mh12y6777bgv6z50cis8h5zwvzlhk8gbwj8ffs6g"; depends=[ape assertthat BH data_table doParallel exactextractr fasterize igraph magrittr Matrix plyr proto raster Rcpp RcppArmadillo rgeos sf slam sp tibble uuid withr]; broken = true; }; psyosphere = derive2 { name="psyosphere"; version="0.1.6"; sha256="1hcas3jk2n11lyw1ysmci0sysxf7qg9h2msqqg7q9nqp5gbf90np"; depends=[geosphere ggplot2 Hmisc lubridate plyr rgdal RgoogleMaps sp]; broken = true; }; qbld = derive2 { name="qbld"; version="1.0.1"; sha256="0agx32f2pf1hzs3and40zd7kfkjml7qjbnn0im4dr2v10h1jz6c0"; depends=[knitr mcmcse Rcpp RcppArmadillo RcppDist rmarkdown stableGR]; broken = true; }; qoma_smuggler = derive2 { name="qoma.smuggler"; version="0.0.1"; sha256="03p9i0kr6i3adpb9lcszcmdr9p26nfy7f8hw2sbydazglaw4hscr"; depends=[lubridate rhli tibble]; broken = true; }; rModeling = derive2 { name="rModeling"; version="0.0.3"; sha256="0xrjxayp59f31wwcqqkzs5my2j2lpbv1f4pp709fmqxz02vbdzhv"; depends=[caret e1071 MASS]; broken = true; }; + rabhit = derive2 { name="rabhit"; version="0.1.5"; sha256="0dqzcv241g2b2slygq87w4qkdxalr58zs61k7485b8745xansxmv"; depends=[alakazam cowplot data_table dendextend dplyr fastmatch ggdendro ggplot2 gridExtra gtable gtools htmlwidgets plotly plyr RColorBrewer reshape2 rlang splitstackshape stringi tidyr tigger]; broken = true; }; rdaemon = derive2 { name="rdaemon"; version="1.0.6"; sha256="1qr6v7kgk9nd5qp96667x51331xmpp1yz1r190dgd1fqigw735s5"; depends=[base64enc futile_logger Rcpp]; broken = true; }; rdomains = derive2 { name="rdomains"; version="0.1.9"; sha256="0pfz438qiz8mqh391nlhz2q2r8830y5i0sg1ajhppj1hq2cgqqbg"; depends=[aws_alexa curl devtools glmnet httr jsonlite Matrix rlang urltools virustotal XML xml2]; broken = true; }; rijkspalette = derive2 { name="rijkspalette"; version="1.0.2"; sha256="00726q8s36si08ghd9sgi7ikadcj11xqwhgv8f3cml6lvwz7ppzz"; depends=[crayon imager jsonlite]; broken = true; }; - rnpn = derive2 { name="rnpn"; version="1.2.2"; sha256="1vijss973b6qxwvljrjcggjhv4wbssazn153phbidjy44kfyw3ky"; depends=[curl data_table httr jsonlite magrittr plyr raster rgdal sp tibble XML]; broken = true; }; - robcp = derive2 { name="robcp"; version="0.3.2"; sha256="081dxq8hcaa7xdz6n5ri4lchx30ma7c844bcirkankkmpz73igcv"; depends=[Rcpp]; broken = true; }; seedwater = derive2 { name="seedwater"; version="2.0"; sha256="1q6q612245hqqx89jzlp77f73vj2baxi0bghd9l8kpjz4ydh6rv8"; depends=[rpanel]; broken = true; }; shinyypr = derive2 { name="shinyypr"; version="0.0.2"; sha256="1k6jsw6gnpwk90hkpa9grki0b68cab57vbd0h6ldjqr11giwcz8z"; depends=[bsplus chk dplyr DT ggplot2 lifecycle magrittr purrr readr shiny shinyjs waiter ypr]; broken = true; }; simLife = derive2 { name="simLife"; version="0.5.2"; sha256="1dhrjszfgxr0j4dkc2bwykyj515ji5rkb572nmnyjgkyi652j01v"; depends=[splancs]; broken = true; }; @@ -18424,14 +18489,12 @@ in with self; { slga = derive2 { name="slga"; version="1.2.0"; sha256="0n96vqczpzc51ln2nraxz0846amasfbm541sy0wf0dsng283mh13"; depends=[httr raster s2 sf xml2]; broken = true; }; soilphysics = derive2 { name="soilphysics"; version="4.0"; sha256="0b4fkc1plmafjdlad7s4pvca6lafmrswwpfddvsh73734s7cslmq"; depends=[boot fields MASS shiny shinydashboard]; broken = true; }; spsann = derive2 { name="spsann"; version="2.2.0"; sha256="00nlrwk50ch128brzvfxld0pcpq1syks9rvwdrcf1i2pcxnva7d0"; depends=[pedometrics Rcpp sp SpatialTools]; broken = true; }; - starvars = derive2 { name="starvars"; version="1.1.7"; sha256="0m8f104s49k2wh89c7k8pz1c5x4xm7qy9hf90fk2kh84nw6jxnbs"; depends=[doSNOW foreach ks lessR MASS matrixcalc optimParallel quantmod vars xts zoo]; broken = true; }; - stats19 = derive2 { name="stats19"; version="1.4.3"; sha256="1kbc02c8h7mqdx8sx6c5qhj2c8wx12jcq9vyqxr9zyj4mjx5ayqs"; depends=[readr sf]; broken = true; }; + stplanr = derive2 { name="stplanr"; version="0.8.4"; sha256="0mkkaz47a3cfbi4jqm930j8dyg3y5j9njqp9za121arsyv0jp3zf"; depends=[curl data_table dplyr geosphere httr igraph jsonlite lwgeom magrittr maptools nabor pbapply raster Rcpp RcppArmadillo rgeos rlang sf sfheaders sp stringr]; broken = true; }; stratifyR = derive2 { name="stratifyR"; version="1.0-2"; sha256="10qlxkdbym206bvl2wc8ig00fvj1n7553vmjk6rs2n4p945qd47g"; depends=[actuar fitdistrplus mc2d triangle zipfR]; broken = true; }; supc = derive2 { name="supc"; version="0.2.5"; sha256="1qj7a1zcj3mf0a40anifjyq851yjksygrpj4vsf0dm4yfwl5viwx"; depends=[BH Rcpp]; broken = true; }; - supernova = derive2 { name="supernova"; version="2.4.2"; sha256="0xbly0jbzhffd3zrgp1rnlr7miyzwk6zagw7lbnhn5l4nq9n6hx7"; depends=[backports cli ggplot2 magrittr pillar purrr rlang stringr tibble vctrs]; broken = true; }; swissparl = derive2 { name="swissparl"; version="0.2.1"; sha256="0181ls1gw68kfz3yqf8m2nwhah87i9m164rlbycy1kxq9adi93cs"; depends=[crayon dplyr ggplot2 httr jsonlite lubridate magrittr purrr stringr tibble tidyr]; broken = true; }; - targeted = derive2 { name="targeted"; version="0.1.1"; sha256="09y4lhwfh7rzk343hc2pjr334x3978q6vyhsvpana0db8plas7aw"; depends=[futile_logger lava optimx Rcpp RcppArmadillo]; broken = true; }; - uFTIR = derive2 { name="uFTIR"; version="0.1.3"; sha256="188zw6hcdp62idczkx454xya90alnpk5bzpv9756lg129r6j4rlk"; depends=[raster Rcpp RcppArmadillo sp]; broken = true; }; + tabulizer = derive2 { name="tabulizer"; version="0.2.2"; sha256="0zd5cfqwgirqchw1mvziscxvzl8pb1y6rbfywkn9i9pxfydkm5vi"; depends=[png rJava tabulizerjars]; broken = true; }; + tabulizerjars = derive2 { name="tabulizerjars"; version="1.0.1"; sha256="005n2gyzzmq8h0mpj8xs6ri6llzwag7nqzpm4vnzp81vwy8kmf92"; depends=[rJava]; broken = true; }; unfoldr = derive2 { name="unfoldr"; version="0.7.1"; sha256="1khas7d04g4y2kwldnsja5xk1n5mys2s66pln3l0gqlsbk67na12"; depends=[]; broken = true; }; usethis2 = derive2 { name="usethis2"; version="0.2.0"; sha256="0ljvfgwg73y71yvyz2pp4c1rzgiqk1x7kmgswxa1ay05zwdgyi0x"; depends=[microservices purrr usethis withr]; broken = true; }; viewshed3d = derive2 { name="viewshed3d"; version="4.0.0"; sha256="039xx39w3k3hckf0qci7j1364s47vja5s18siqjh6c5yy1w8q737"; depends=[data_table hyper_fit lidR nabor pkgcond plotrix pracma raster rgl sp viridis]; broken = true; }; diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index 264969c8c118..f48d41e25f2b 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -309,6 +309,7 @@ let gert = [ pkgs.libgit2 ]; haven = with pkgs; [ libiconv zlib.dev ]; h5vc = [ pkgs.zlib.dev ]; + HDF5Array = [ pkgs.zlib.dev ]; HiCseg = [ pkgs.gsl ]; imager = [ pkgs.x11 ]; iBMQ = [ pkgs.gsl ]; @@ -337,7 +338,6 @@ let phytools = [ pkgs.which ]; PKI = [ pkgs.openssl.dev ]; png = [ pkgs.libpng.dev ]; - proj4 = [ pkgs.proj ]; protolite = [ pkgs.protobuf ]; R2SWF = with pkgs; [ zlib libpng freetype.dev ]; RAppArmor = [ pkgs.libapparmor ]; @@ -449,6 +449,11 @@ let RDieHarder = [ pkgs.gsl ]; QF = [ pkgs.gsl ]; PICS = [ pkgs.gsl ]; + RcppCWB = [ pkgs.pkg-config ]; + rrd = [ pkgs.pkg-config ]; + trackViewer = [ pkgs.zlib.dev ]; + themetagenomics = [ pkgs.zlib.dev ]; + NanoMethViz = [ pkgs.zlib.dev ]; }; packagesWithBuildInputs = { @@ -571,6 +576,31 @@ let sparkwarc = [ pkgs.zlib.dev ]; RoBMA = [ pkgs.jags ]; rGEDI = with pkgs; [ libgeotiff.dev libaec zlib.dev hdf5.dev ]; + rawrr = [ pkgs.mono ]; + HDF5Array = [ pkgs.zlib.dev ]; + FLAMES = [ pkgs.zlib.dev ]; + ncdfFlow = [ pkgs.zlib.dev ]; + proj4 = [ pkgs.proj.dev ]; + rtmpt = [ pkgs.gsl ]; + mixcat = [ pkgs.gsl ]; + libstableR = [ pkgs.gsl ]; + landsepi = [ pkgs.gsl ]; + flan = [ pkgs.gsl ]; + econetwork = [ pkgs.gsl ]; + crandep = [ pkgs.gsl ]; + catSurv = [ pkgs.gsl ]; + ccfindR = [ pkgs.gsl ]; + SPARSEMODr = [ pkgs.gsl ]; + RKHSMetaMod = [ pkgs.gsl ]; + LCMCR = [ pkgs.gsl ]; + BNSP = [ pkgs.gsl ]; + scModels = [ pkgs.mpfr.dev ]; + multibridge = [ pkgs.mpfr.dev ]; + RcppCWB = with pkgs; [ pcre.dev glib.dev ]; + RmecabKo = [ pkgs.mecab ]; + PoissonBinomial = [ pkgs.fftw.dev ]; + rrd = [ pkgs.rrdtool ]; + flowWorkspace = [ pkgs.zlib.dev ]; }; packagesRequiringX = [ @@ -804,6 +834,9 @@ let "CoTiMA" "TBRDist" "Rogue" + "fixest" + "paxtoolsr" + "systemPipeShiny" ]; packagesToSkipCheck = [ @@ -817,11 +850,15 @@ let "av" "rgl" "NetLogoR" - "proj4" "x13binary" + "valse" + "HierO" # Impure network access during build "waddR" + "tiledb" + "x13binary" + "switchr" # ExperimentHub dependents, require net access during build "DuoClustering2018" @@ -844,6 +881,7 @@ let "muscData" "org_Mxanthus_db" "scpdata" + "nullrangesData" ]; otherOverrides = old: new: { @@ -1182,6 +1220,24 @@ let ''; }); + arrow = old.arrow.overrideDerivation (attrs: { + preConfigure = '' + patchShebangs configure + ''; + }); + + proj4 = old.proj4.overrideDerivation (attrs: { + preConfigure = '' + substituteInPlace configure \ + --replace "-lsqlite3" "-L${lib.makeLibraryPath [ pkgs.sqlite ]} -lsqlite3" + ''; + }); + + rrd = old.rrd.overrideDerivation (attrs: { + preConfigure = '' + patchShebangs configure + ''; + }); }; in self diff --git a/pkgs/development/ruby-modules/gem-config/default.nix b/pkgs/development/ruby-modules/gem-config/default.nix index d06b362e2ce4..f389ebb4578e 100644 --- a/pkgs/development/ruby-modules/gem-config/default.nix +++ b/pkgs/development/ruby-modules/gem-config/default.nix @@ -437,7 +437,10 @@ in "--with-xslt-include=${libxslt.dev}/include" "--with-exslt-lib=${libxslt.out}/lib" "--with-exslt-include=${libxslt.dev}/include" - ] ++ lib.optional stdenv.isDarwin "--with-iconv-dir=${libiconv}"; + ] ++ lib.optionals stdenv.isDarwin [ + "--with-iconv-dir=${libiconv}" + "--with-opt-include=${libiconv}/include" + ]; }; openssl = attrs: { diff --git a/pkgs/development/tools/ammonite/default.nix b/pkgs/development/tools/ammonite/default.nix index 157ee78d53cc..a31a6478a761 100644 --- a/pkgs/development/tools/ammonite/default.nix +++ b/pkgs/development/tools/ammonite/default.nix @@ -1,5 +1,5 @@ -{ lib, stdenv, fetchurl, jre, writeScript, common-updater-scripts -, git, nixfmt, nix, coreutils, gnused, disableRemoteLogging ? true }: +{ lib, stdenv, fetchurl, jre, writeScript, common-updater-scripts, git, nixfmt +, nix, coreutils, gnused, disableRemoteLogging ? true }: with lib; @@ -9,7 +9,7 @@ let common = { scalaVersion, sha256 }: stdenv.mkDerivation rec { pname = "ammonite"; - version = "2.4.0"; + version = "2.4.1"; src = fetchurl { url = @@ -61,7 +61,7 @@ let installCheckPhase = '' runHook preInstallCheck - $out/bin/amm -c 'val foo = 21; println(foo * 2)' | grep 42 + $out/bin/amm -h "$PWD" -c 'val foo = 21; println(foo * 2)' | grep 42 runHook postInstallCheck ''; @@ -83,10 +83,10 @@ let in { ammonite_2_12 = common { scalaVersion = "2.12"; - sha256 = "K8JII6SAmnBjMWQ9a3NqSLLuP1OLcbwobj3G+OCiLdA="; + sha256 = "5n9q/7d/PwDJfBPITYyDua24+fci6bi1oG5dSw8A244="; }; ammonite_2_13 = common { scalaVersion = "2.13"; - sha256 = "2F35qhWI6hNb+Eh9ZTDznqo116yN7MZIGVchaAIM36A="; + sha256 = "RIuNyWvwNM39/rczUH328K5ky5hePflokW/VP603j+I="; }; } diff --git a/pkgs/development/tools/analysis/cargo-tarpaulin/default.nix b/pkgs/development/tools/analysis/cargo-tarpaulin/default.nix index bb06e269aeb1..6402f90d5676 100644 --- a/pkgs/development/tools/analysis/cargo-tarpaulin/default.nix +++ b/pkgs/development/tools/analysis/cargo-tarpaulin/default.nix @@ -2,13 +2,13 @@ rustPlatform.buildRustPackage rec { pname = "cargo-tarpaulin"; - version = "0.18.2"; + version = "0.18.3"; src = fetchFromGitHub { owner = "xd009642"; repo = "tarpaulin"; rev = version; - sha256 = "sha256-3ep90G6LW83XGyS9b465u8/SznJRZBhEV/YQU8fua1s="; + sha256 = "sha256-n43n9rmLWmGF7JXz/jspT6Stn0fQnkbkxqbuqXiZLHA="; }; nativeBuildInputs = [ @@ -17,7 +17,7 @@ rustPlatform.buildRustPackage rec { buildInputs = [ openssl ] ++ lib.optionals stdenv.isDarwin [ curl Security ]; - cargoSha256 = "sha256-UtFGuJ6HEUtonH43iuum1hrhnYesQpkyqPTVcqWAoiA="; + cargoSha256 = "sha256-dJey7z0gRUu5MRKOfR909eQNTt3zpZnoWYvRhHzZlGs="; #checkFlags = [ "--test-threads" "1" ]; doCheck = false; diff --git a/pkgs/development/tools/analysis/checkov/default.nix b/pkgs/development/tools/analysis/checkov/default.nix index 19ca44143ff6..7a6ced8b3062 100644 --- a/pkgs/development/tools/analysis/checkov/default.nix +++ b/pkgs/development/tools/analysis/checkov/default.nix @@ -56,15 +56,13 @@ with py.pkgs; buildPythonApplication rec { pname = "checkov"; - version = "2.0.528"; - - disabled = python3.pythonOlder "3.7"; + version = "2.0.568"; src = fetchFromGitHub { owner = "bridgecrewio"; repo = pname; rev = version; - sha256 = "sha256-RcQVm3ppe3c4G/32Dgf6UhwtxJyQWgS4vD5wMYIfwKY="; + sha256 = "sha256-V1YHD0+gXx5wLfhrfze6kAgF1egxXbjf4c2zEc/oT1A="; }; nativeBuildInputs = with py.pkgs; [ diff --git a/pkgs/development/tools/analysis/rr/zen_workaround.nix b/pkgs/development/tools/analysis/rr/zen_workaround.nix index a79c70821558..193e70d0d95d 100644 --- a/pkgs/development/tools/analysis/rr/zen_workaround.nix +++ b/pkgs/development/tools/analysis/rr/zen_workaround.nix @@ -2,7 +2,7 @@ /* The python script shouldn't be needed for users of this kernel module. https://github.com/rr-debugger/rr/blob/master/scripts/zen_workaround.py - The module itself is called "zen_workaround" (a bit generic unfortunatelly). + The module itself is called "zen_workaround" (a bit generic unfortunately). */ stdenv.mkDerivation rec { pname = "rr-zen_workaround"; @@ -39,7 +39,7 @@ stdenv.mkDerivation rec { homepage = "https://github.com/rr-debugger/rr/wiki/Zen#kernel-module"; license = licenses.gpl2; maintainers = [ maintainers.vcunat ]; - platforms = platforms.linux; + platforms = [ "x86_64-linux" ]; broken = versionOlder kernel.version "4.19"; # 4.14 breaks and 4.19 works }; } diff --git a/pkgs/development/tools/analysis/sparse/default.nix b/pkgs/development/tools/analysis/sparse/default.nix index 75541dc112a8..780ae828e28c 100644 --- a/pkgs/development/tools/analysis/sparse/default.nix +++ b/pkgs/development/tools/analysis/sparse/default.nix @@ -4,11 +4,11 @@ let GCC_BASE = "${stdenv.cc.cc}/lib/gcc/${stdenv.hostPlatform.uname.processor}-unknown-linux-gnu/${stdenv.cc.cc.version}"; in stdenv.mkDerivation rec { pname = "sparse"; - version = "0.6.3"; + version = "0.6.4"; src = fetchurl { url = "mirror://kernel/software/devel/sparse/dist/${pname}-${version}.tar.xz"; - sha256 = "16d8c4dhipjzjf8z4z7pix1pdpqydz0v4r7i345f5s09hjnxpxnl"; + sha256 = "sha256-arKLSZG8au29c1UCkTYKpqs99B9ZIGqb3paQIIpuOHw="; }; preConfigure = '' diff --git a/pkgs/development/tools/analysis/tflint/default.nix b/pkgs/development/tools/analysis/tflint/default.nix index f287d10ff42d..3d5eec0d9373 100644 --- a/pkgs/development/tools/analysis/tflint/default.nix +++ b/pkgs/development/tools/analysis/tflint/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "tflint"; - version = "0.33.0"; + version = "0.33.1"; src = fetchFromGitHub { owner = "terraform-linters"; repo = pname; rev = "v${version}"; - sha256 = "1cq84ggp32xx79sgrxyqysqs34lhzyv8jdg7d46d9hdvjcwjb5af"; + sha256 = "1n1xw2h544r6bap2drgrip9i8nl5zg5gcdic8qj3y93ppisgzqml"; }; - vendorSha256 = "1ay3vf4dqlbizq98nxz2cgi67ck1c6lw7wi28w56607qzbx0yvmg"; + vendorSha256 = "0fq4nbd0w1nb98g321mns76a60dwwhf4w7g589qz87z29vdy0jbk"; doCheck = false; diff --git a/pkgs/development/tools/analysis/tfsec/default.nix b/pkgs/development/tools/analysis/tfsec/default.nix index 3e4c4e237cd3..ac4173c514ab 100644 --- a/pkgs/development/tools/analysis/tfsec/default.nix +++ b/pkgs/development/tools/analysis/tfsec/default.nix @@ -5,13 +5,13 @@ buildGoPackage rec { pname = "tfsec"; - version = "0.58.14"; + version = "0.59.0"; src = fetchFromGitHub { owner = "aquasecurity"; repo = pname; rev = "v${version}"; - sha256 = "sha256-NbuhZkU3QYoqeVVh7/G6P+IeixuakD0+7QXU6YC1VN4="; + sha256 = "sha256-j/JHHkS4mIuDv76HtIFbrf2VRqGINyB9OODaM+fJsJc="; }; goPackagePath = "github.com/aquasecurity/tfsec"; diff --git a/pkgs/development/tools/analysis/valgrind/default.nix b/pkgs/development/tools/analysis/valgrind/default.nix index 5d747317e453..3137679cc324 100644 --- a/pkgs/development/tools/analysis/valgrind/default.nix +++ b/pkgs/development/tools/analysis/valgrind/default.nix @@ -87,6 +87,6 @@ stdenv.mkDerivation rec { "riscv32-linux" "riscv64-linux" "alpha-linux" ]; - broken = stdenv.isDarwin; # https://hydra.nixos.org/build/128521440/nixlog/2 + broken = stdenv.isDarwin || stdenv.hostPlatform.isStatic; # https://hydra.nixos.org/build/128521440/nixlog/2 }; } diff --git a/pkgs/development/tools/avro-tools/default.nix b/pkgs/development/tools/avro-tools/default.nix index 5dd058614c10..c7a96ce247eb 100644 --- a/pkgs/development/tools/avro-tools/default.nix +++ b/pkgs/development/tools/avro-tools/default.nix @@ -6,7 +6,7 @@ stdenv.mkDerivation rec { src = fetchurl { url = - "https://repo1.maven.org/maven2/org/apache/avro/avro-tools/${version}/${pname}-${version}.jar"; + "mirror://maven/org/apache/avro/avro-tools/${version}/${pname}-${version}.jar"; sha256 = "169cv4fjsj69fa2s87gh1i7wk0xzh3l7sx5yyz3cgyjalg4a12n1"; }; diff --git a/pkgs/development/tools/aws-sam-cli/default.nix b/pkgs/development/tools/aws-sam-cli/default.nix index c370cddbe436..7b0500400296 100644 --- a/pkgs/development/tools/aws-sam-cli/default.nix +++ b/pkgs/development/tools/aws-sam-cli/default.nix @@ -5,11 +5,11 @@ python3.pkgs.buildPythonApplication rec { pname = "aws-sam-cli"; - version = "1.29.0"; + version = "1.35.0"; src = python3.pkgs.fetchPypi { inherit pname version; - sha256 = "sha256-JXphjERqY5Vj8j2F4Z7FrFJJEpBgK/5236pYfQRVdco="; + sha256 = "sha256-ojJoC8UuZDVm6CDmYbPoO0e+1QAYa0UcekYEd/MGFRM="; }; # Tests are not included in the PyPI package @@ -30,6 +30,8 @@ python3.pkgs.buildPythonApplication rec { serverlessrepo tomlkit watchdog + typing-extensions + regex ]; postFixup = if enableTelemetry then "echo aws-sam-cli TELEMETRY IS ENABLED" else '' @@ -42,10 +44,14 @@ python3.pkgs.buildPythonApplication rec { substituteInPlace requirements/base.txt \ --replace "click~=7.1" "click~=8.0" \ --replace "Flask~=1.1.2" "Flask~=2.0" \ - --replace "dateparser~=0.7" "dateparser>=0.7" \ + --replace "dateparser~=1.0" "dateparser>=0.7" \ --replace "docker~=4.2.0" "docker>=4.2.0" \ --replace "requests==" "requests #" \ - --replace "watchdog==" "watchdog #" + --replace "watchdog==" "watchdog #" \ + --replace "aws_lambda_builders==" "aws-lambda-builders #" \ + --replace "typing_extensions==" "typing-extensions #" \ + --replace "regex==" "regex #" \ + --replace "tzlocal==3.0" "tzlocal==2.*" ''; meta = with lib; { diff --git a/pkgs/development/tools/azcopy/default.nix b/pkgs/development/tools/azcopy/default.nix index 5e00f1bc3949..27d1c866725a 100644 --- a/pkgs/development/tools/azcopy/default.nix +++ b/pkgs/development/tools/azcopy/default.nix @@ -2,18 +2,18 @@ buildGoModule rec { pname = "azure-storage-azcopy"; - version = "10.12.2"; + version = "10.13.0"; src = fetchFromGitHub { owner = "Azure"; repo = "azure-storage-azcopy"; rev = "v${version}"; - sha256 = "sha256-NmWCaTmQlCAKaVDumDlubHQhUjhY7uYawkjrP2ggczk="; + sha256 = "sha256-L5gfS2hwk1uaWEygn+liupdANL9qizHAjxNz25KBwaY="; }; subPackages = [ "." ]; - vendorSha256 = "sha256-4Jz57VjdQX+LJexEZau4pd8nIQPt0HGzCjHRj7uPox4="; + vendorSha256 = "sha256-ePEpc18Y99Moe/aj8n1+no6D70vZoIEjC023Uup98Uo="; doCheck = false; diff --git a/pkgs/development/tools/bazel-gazelle/default.nix b/pkgs/development/tools/bazel-gazelle/default.nix index a3838283c5eb..f78125ae990b 100644 --- a/pkgs/development/tools/bazel-gazelle/default.nix +++ b/pkgs/development/tools/bazel-gazelle/default.nix @@ -5,13 +5,13 @@ buildGoModule rec { pname = "bazel-gazelle"; - version = "0.21.1"; + version = "0.24.0"; src = fetchFromGitHub { owner = "bazelbuild"; repo = pname; rev = "v${version}"; - sha256 = "12ffrildgx4lah7bdnhr7i8z5jp05lll6gmmpzshmzz8dsgf39y4"; + sha256 = "sha256-WWAOhV1H/OnARjhoWQYNmd9/y8pD3bRkhncmzt/36mA="; }; vendorSha256 = null; diff --git a/pkgs/development/tools/buf/default.nix b/pkgs/development/tools/buf/default.nix index d2b84ee3f6ee..7914af6ec808 100644 --- a/pkgs/development/tools/buf/default.nix +++ b/pkgs/development/tools/buf/default.nix @@ -9,15 +9,15 @@ buildGoModule rec { pname = "buf"; - version = "0.54.1"; + version = "1.0.0-rc8"; src = fetchFromGitHub { owner = "bufbuild"; repo = pname; rev = "v${version}"; - sha256 = "sha256-v8n1K2YrN8o4IPA2u6Sg5zsOM08nppg29vlU6ycMj9U="; + sha256 = "sha256-Oye+nYvKdT9t36hAMJSAJZCOQ2L3rHSjhjIu9gU2MWo="; }; - vendorSha256 = "sha256-WLQ8Bw/UgRVTFEKpDbv6VZkMHQm2tgxekH3J7Sd5vC8="; + vendorSha256 = "sha256-aZv44ZPW/bJ8TEXU79ExREj2DH6j7J1+E/E1yh13Hvc="; patches = [ # Skip a test that requires networking to be available to work. @@ -47,9 +47,7 @@ buildGoModule rec { for FILE in \ "buf" \ "protoc-gen-buf-breaking" \ - "protoc-gen-buf-lint" \ - "protoc-gen-buf-check-breaking" \ - "protoc-gen-buf-check-lint"; do + "protoc-gen-buf-lint"; do cp "$GOPATH/bin/$FILE" "$out/bin/" done @@ -63,6 +61,6 @@ buildGoModule rec { changelog = "https://github.com/bufbuild/buf/releases/tag/v${version}"; description = "Create consistent Protobuf APIs that preserve compatibility and comply with design best-practices"; license = licenses.asl20; - maintainers = with maintainers; [ raboof jk ]; + maintainers = with maintainers; [ raboof jk lrewega ]; }; } diff --git a/pkgs/development/tools/build-managers/bazel/bazel_0_29/default.nix b/pkgs/development/tools/build-managers/bazel/bazel_0_29/default.nix index 92bbbd452145..3a3a39b3eeee 100644 --- a/pkgs/development/tools/build-managers/bazel/bazel_0_29/default.nix +++ b/pkgs/development/tools/build-managers/bazel/bazel_0_29/default.nix @@ -37,7 +37,7 @@ let srcDeps = lib.attrsets.attrValues srcDepsSet; srcDepsSet = let - srcs = (builtins.fromJSON (builtins.readFile ./src-deps.json)); + srcs = lib.importJSON ./src-deps.json; toFetchurl = d: lib.attrsets.nameValuePair d.name (fetchurl { urls = d.urls; sha256 = d.sha256; diff --git a/pkgs/development/tools/build-managers/bazel/bazel_1/default.nix b/pkgs/development/tools/build-managers/bazel/bazel_1/default.nix index 5eb0926503c8..ee39a7c6f7b2 100644 --- a/pkgs/development/tools/build-managers/bazel/bazel_1/default.nix +++ b/pkgs/development/tools/build-managers/bazel/bazel_1/default.nix @@ -37,7 +37,7 @@ let srcDeps = lib.attrsets.attrValues srcDepsSet; srcDepsSet = let - srcs = (builtins.fromJSON (builtins.readFile ./src-deps.json)); + srcs = lib.importJSON ./src-deps.json; toFetchurl = d: lib.attrsets.nameValuePair d.name (fetchurl { urls = d.urls; sha256 = d.sha256; diff --git a/pkgs/development/tools/build-managers/bazel/bazel_3/default.nix b/pkgs/development/tools/build-managers/bazel/bazel_3/default.nix index fd29102b7e58..a08f7a62eae6 100644 --- a/pkgs/development/tools/build-managers/bazel/bazel_3/default.nix +++ b/pkgs/development/tools/build-managers/bazel/bazel_3/default.nix @@ -37,7 +37,7 @@ let srcDeps = lib.attrsets.attrValues srcDepsSet; srcDepsSet = let - srcs = (builtins.fromJSON (builtins.readFile ./src-deps.json)); + srcs = lib.importJSON ./src-deps.json; toFetchurl = d: lib.attrsets.nameValuePair d.name (fetchurl { urls = d.urls; sha256 = d.sha256; @@ -405,8 +405,8 @@ stdenv.mkDerivation rec { substituteInPlace tools/objc/j2objc_dead_code_pruner.py --replace "$!/usr/bin/python2.7" "#!${python27}/bin/python" # md5sum is part of coreutils - sed -i 's|/sbin/md5|md5sum|' \ - src/BUILD + sed -i 's|/sbin/md5|md5sum|g' \ + src/BUILD third_party/ijar/test/testenv.sh tools/objc/libtool.sh # replace initial value of pythonShebang variable in BazelPythonSemantics.java substituteInPlace src/main/java/com/google/devtools/build/lib/bazel/rules/python/BazelPythonSemantics.java \ diff --git a/pkgs/development/tools/build-managers/bazel/bazel_4/default.nix b/pkgs/development/tools/build-managers/bazel/bazel_4/default.nix index 47e01c5ad807..0e021d05ac37 100644 --- a/pkgs/development/tools/build-managers/bazel/bazel_4/default.nix +++ b/pkgs/development/tools/build-managers/bazel/bazel_4/default.nix @@ -40,7 +40,7 @@ let srcDeps = lib.attrsets.attrValues srcDepsSet; srcDepsSet = let - srcs = (builtins.fromJSON (builtins.readFile ./src-deps.json)); + srcs = lib.importJSON ./src-deps.json; toFetchurl = d: lib.attrsets.nameValuePair d.name (fetchurl { urls = d.urls; sha256 = d.sha256; @@ -434,8 +434,8 @@ stdenv.mkDerivation rec { substituteInPlace tools/objc/j2objc_dead_code_pruner.py --replace "$!/usr/bin/python2.7" "#!${python27}/bin/python" # md5sum is part of coreutils - sed -i 's|/sbin/md5|md5sum|' \ - src/BUILD + sed -i 's|/sbin/md5|md5sum|g' \ + src/BUILD third_party/ijar/test/testenv.sh tools/objc/libtool.sh # replace initial value of pythonShebang variable in BazelPythonSemantics.java substituteInPlace src/main/java/com/google/devtools/build/lib/bazel/rules/python/BazelPythonSemantics.java \ @@ -617,7 +617,9 @@ stdenv.mkDerivation rec { ./bazel_src/output/bazel-complete.fish ''; - doInstallCheck = true; + # Install check fails on `aarch64-darwin` + # https://github.com/NixOS/nixpkgs/issues/145587 + doInstallCheck = stdenv.hostPlatform.system != "aarch64-darwin"; installCheckPhase = '' export TEST_TMPDIR=$(pwd) diff --git a/pkgs/development/tools/build-managers/bear/default.nix b/pkgs/development/tools/build-managers/bear/default.nix index a81a57235408..552cb0573665 100644 --- a/pkgs/development/tools/build-managers/bear/default.nix +++ b/pkgs/development/tools/build-managers/bear/default.nix @@ -7,7 +7,6 @@ , openssl , nlohmann_json , gtest -, fmt , spdlog , c-ares , abseil-cpp @@ -35,7 +34,6 @@ stdenv.mkDerivation rec { openssl nlohmann_json gtest - fmt spdlog c-ares abseil-cpp diff --git a/pkgs/development/tools/build-managers/dub/default.nix b/pkgs/development/tools/build-managers/dub/default.nix index fb85c1f33269..ec67bcd691ed 100644 --- a/pkgs/development/tools/build-managers/dub/default.nix +++ b/pkgs/development/tools/build-managers/dub/default.nix @@ -150,6 +150,6 @@ stdenv.mkDerivation rec { homepage = "https://code.dlang.org/"; license = licenses.mit; maintainers = with maintainers; [ ThomasMader ]; - platforms = [ "x86_64-linux" "i686-linux" "x86_64-darwin" ]; + platforms = [ "x86_64-linux" "i686-linux" "x86_64-darwin" "aarch64-darwin" ]; }; } diff --git a/pkgs/development/tools/build-managers/go-mk/default.nix b/pkgs/development/tools/build-managers/go-mk/default.nix new file mode 100644 index 000000000000..f543d60da957 --- /dev/null +++ b/pkgs/development/tools/build-managers/go-mk/default.nix @@ -0,0 +1,31 @@ +{ lib +, buildGoPackage +, fetchFromGitHub +}: + +buildGoPackage rec { + pname = "go-mk"; + version = "0.pre+date=2015-03-24"; + + src = fetchFromGitHub { + owner = "dcjones"; + repo = "mk"; + rev = "73d1b31466c16d0a13a220e5fad7cd8ef6d984d1"; + hash = "sha256-fk2Qd3LDMx+RapKi1M9yCuxpS0IB6xlbEWW+H6t94AI="; + }; + + goPackagePath = "github.com/dcjones/mk"; + + meta = with lib; { + inherit (src.meta) homepage; + description = "A reboot of Plan9's mk, written in Go"; + longDescription = '' + Mk is a reboot of the Plan 9 mk command, which itself is a successor to + make. This tool is for anyone who loves make, but hates all its stupid + bullshit. + ''; + license = licenses.bsd2; + maintainers = with maintainers; [ AndersonTorres ]; + platforms = platforms.unix; + }; +} diff --git a/pkgs/development/tools/build-managers/gradle/default.nix b/pkgs/development/tools/build-managers/gradle/default.nix index 5e2ef7ef9442..877f28419055 100644 --- a/pkgs/development/tools/build-managers/gradle/default.nix +++ b/pkgs/development/tools/build-managers/gradle/default.nix @@ -47,7 +47,7 @@ rec { nativeBuildInputs = [ makeWrapper unzip ]; buildInputs = [ java ]; - meta = { + meta = with lib; { description = "Enterprise-grade build system"; longDescription = '' Gradle is a build system which offers you ease, power and freedom. @@ -58,31 +58,24 @@ rec { build-by-convention behavior. ''; homepage = "http://www.gradle.org/"; - license = lib.licenses.asl20; - platforms = lib.platforms.unix; + license = licenses.asl20; + platforms = platforms.unix; + maintainers = with maintainers; [ lorenzleutgeb ]; }; }; - gradle_latest = gradle_7; - - gradle_7 = gradleGen (gradleSpec { - version = "7.2"; - nativeVersion = "0.22-milestone-21"; - sha256 = "1pg6w5czysywsgdvmll5bwd2p6y99cn5sn3gw69cps9mkjd710gm"; - }); - - gradle_6_8 = gradleGen (gradleSpec { - version = "6.8.3"; - nativeVersion = "0.22-milestone-9"; - sha256 = "01fjrk5nfdp6mldyblfmnkq2gv1rz1818kzgr0k2i1wzfsc73akz"; - }); + gradle_latest = gradle_7_3; + gradle_7_3 = gradleGen (gradleSpec (import ./gradle-7.3-spec.nix)); + gradle_6_9 = gradleGen (gradleSpec (import ./gradle-6.9.1-spec.nix)); + # NOTE: No GitHub Release for this release, so update.sh does not work. gradle_5_6 = gradleGen (gradleSpec { version = "5.6.4"; nativeVersion = "0.18"; - sha256 = "1f3067073041bc44554d0efe5d402a33bc3d3c93cc39ab684f308586d732a80d"; + sha256 = "03d86bbqd19h9xlanffcjcy3vg1k5905vzhf9mal9g21603nfc0z"; }); + # NOTE: No GitHub Release for this release, so update.sh does not work. gradle_4_10 = gradleGen (gradleSpec { version = "4.10.3"; nativeVersion = "0.14"; diff --git a/pkgs/development/tools/build-managers/gradle/gradle-6.9.1-spec.nix b/pkgs/development/tools/build-managers/gradle/gradle-6.9.1-spec.nix new file mode 100644 index 000000000000..d343d6bf2726 --- /dev/null +++ b/pkgs/development/tools/build-managers/gradle/gradle-6.9.1-spec.nix @@ -0,0 +1,5 @@ +{ + version = "6.9.1"; + nativeVersion = "0.22-milestone-20"; + sha256 = "1zmjfwlh34b65rdx9izgavw3qwqqwm39h5siyj2bf0m55111a4lc"; +} diff --git a/pkgs/development/tools/build-managers/gradle/gradle-7.2-spec.nix b/pkgs/development/tools/build-managers/gradle/gradle-7.2-spec.nix new file mode 100644 index 000000000000..1237fb562bdb --- /dev/null +++ b/pkgs/development/tools/build-managers/gradle/gradle-7.2-spec.nix @@ -0,0 +1,5 @@ +{ + version = "7.2"; + nativeVersion = "0.22-milestone-21"; + sha256 = "1pg6w5czysywsgdvmll5bwd2p6y99cn5sn3gw69cps9mkjd710gm"; +} diff --git a/pkgs/development/tools/build-managers/gradle/gradle-7.3-spec.nix b/pkgs/development/tools/build-managers/gradle/gradle-7.3-spec.nix new file mode 100644 index 000000000000..2e7b00732970 --- /dev/null +++ b/pkgs/development/tools/build-managers/gradle/gradle-7.3-spec.nix @@ -0,0 +1,5 @@ +{ + version = "7.3"; + nativeVersion = "0.22-milestone-21"; + sha256 = "04741q7avmn7rv9h5s6dqj4ibnvdylxrlhvj9wb5kixx96nm53yy"; +} diff --git a/pkgs/development/tools/build-managers/gradle/update.sh b/pkgs/development/tools/build-managers/gradle/update.sh new file mode 100755 index 000000000000..03c914bbdaf4 --- /dev/null +++ b/pkgs/development/tools/build-managers/gradle/update.sh @@ -0,0 +1,57 @@ +#!/usr/bin/env nix-shell +#!nix-shell -i bash -p nix-prefetch curl jq + +# Generates Gradle release specs from GitHub Releases. +# +# As of 2021-11, this script has very poor error handling, +# it is expected to be run by maintainers as one-off job +# only. +# +# NOTE: The earliest Gradle release that has a +# corresponding entry as GitHub Release is 6.8-rc-1. + +for v in $(curl -s "https://api.github.com/repos/gradle/gradle/releases" | jq -r '.[].tag_name' | sort -n -r) +do + # Tag names and download filenames are not the same, + # we modify the tag name slightly to translate it + # to the naming scheme of download filenames. + # This translation assumes a tag naming scheme. + # As of 2021-11 it works from 6.8-rc-1 to 7.3-rc-3. + + # Remove first letter (assumed to be "v"). + v=${v:1} + + # To lower case. + v=${v,,} + + # Add dash after "rc". + v=${v/-rc/-rc-} + + # Remove trailing ".0" + v=${v%.0} + + # Remove trailing ".0" for release candidates. + v=${v/.0-rc/-rc} + + f="gradle-${v}-spec.nix" + + if [ -f "$f" ] + then + echo "$v SKIP" + continue + fi + + url="https://services.gradle.org/distributions/gradle-${v}-bin.zip" + read -d "\n" gradle_hash gradle_path < <(nix-prefetch-url --print-path $url) + + # Prefix and suffix for "native-platform" dependency. + gradle_native_prefix="gradle-$v/lib/native-native-" + gradle_native_suffix=".jar" + gradle_native=$(zipinfo -1 "$gradle_path" "$gradle_native_prefix*$gradle_native_suffix" | head -n1) + gradle_native=${gradle_native#"$gradle_native_prefix"} + gradle_native=${gradle_native%"$gradle_native_suffix"} + + echo -e "{\\n version = \"$v\";\\n nativeVersion = \"$gradle_native\";\\n sha256 = \"$gradle_hash\";\\n}" > $f + + echo "$v DONE" +done diff --git a/pkgs/development/tools/build-managers/mk/builder.sh b/pkgs/development/tools/build-managers/mk/builder.sh deleted file mode 100644 index 73678ae9f5cc..000000000000 --- a/pkgs/development/tools/build-managers/mk/builder.sh +++ /dev/null @@ -1,4 +0,0 @@ -source $stdenv/setup -installFlags="PREFIX=$out" -preInstall="mkdir -p $out/man/man1 $out/bin" -genericBuild diff --git a/pkgs/development/tools/build-managers/mk/default.nix b/pkgs/development/tools/build-managers/mk/default.nix deleted file mode 100644 index afc0b6f1ec01..000000000000 --- a/pkgs/development/tools/build-managers/mk/default.nix +++ /dev/null @@ -1,15 +0,0 @@ -{lib, stdenv, fetchurl}: - -stdenv.mkDerivation rec { - pname = "mk"; - version = "unstable-2006-01-31"; - src = fetchurl { - url = "http://tarballs.nixos.org/${pname}-20060131.tar.gz"; - sha256 = "0za8dp1211bdp4584xb59liqpww7w1ql0cmlv34p9y928nibcxsr"; - }; - builder = ./builder.sh; - - meta = { - platforms = lib.platforms.unix; - }; -} diff --git a/pkgs/development/tools/build-managers/scala-cli/default.nix b/pkgs/development/tools/build-managers/scala-cli/default.nix new file mode 100644 index 000000000000..7d7e084a79ff --- /dev/null +++ b/pkgs/development/tools/build-managers/scala-cli/default.nix @@ -0,0 +1,65 @@ +{ stdenv, coreutils, lib, installShellFiles, zlib, autoPatchelfHook, fetchurl }: + +let + version = "0.0.8"; + assets = { + x86_64-darwin = { + asset = "scala-cli-x86_64-apple-darwin.gz"; + sha256 = "14bf1zwvfq86vh00qlf8jf4sb82p9jakrmwqhnv9p0x13lq56xm5"; + }; + x86_64-linux = { + asset = "scala-cli-x86_64-pc-linux.gz"; + sha256 = "01dhcj6q9c87aqpz8vy1kwaa1qqq9bh43rkx2sabhnfrzj4vypjr"; + }; + }; +in +stdenv.mkDerivation { + pname = "scala-cli"; + inherit version; + nativeBuildInputs = [ autoPatchelfHook installShellFiles ]; + buildInputs = [ coreutils zlib stdenv.cc.cc ]; + src = + let + asset = assets."${stdenv.hostPlatform.system}" or (throw "Unsupported platform ${stdenv.hostPlatform.system}"); + in + fetchurl { + url = "https://github.com/Virtuslab/scala-cli/releases/download/v${version}/${asset.asset}"; + sha256 = asset.sha256; + }; + + unpackPhase = '' + runHook preUnpack + gzip -d < $src > scala-cli + runHook postUnpack + ''; + + installPhase = '' + runHook preInstall + install -Dm755 scala-cli $out/bin/scala-cli + runHook postInstall + ''; + + # We need to call autopatchelf before generating completions + dontAutoPatchelf = true; + + postFixup = '' + autoPatchelf $out + + # hack to ensure the completion function looks right + # as $0 is used to generate the compdef directive + PATH="$out/bin:$PATH" + + installShellCompletion --cmd scala-cli \ + --bash <(scala-cli completions bash) \ + --zsh <(scala-cli completions zsh) + ''; + + meta = with lib; { + homepage = "https://scala-cli.virtuslab.org"; + downloadPage = "https://github.com/VirtusLab/scala-cli/releases/v${version}"; + license = licenses.asl20; + description = "Command-line tool to interact with the Scala language"; + maintainers = [ maintainers.kubukoz ]; + platforms = builtins.attrNames assets; + }; +} diff --git a/pkgs/development/tools/cargo-flamegraph/default.nix b/pkgs/development/tools/cargo-flamegraph/default.nix index 65a49551035d..33c3a20e2d86 100644 --- a/pkgs/development/tools/cargo-flamegraph/default.nix +++ b/pkgs/development/tools/cargo-flamegraph/default.nix @@ -4,16 +4,16 @@ rustPlatform.buildRustPackage rec { pname = "cargo-flamegraph"; - version = "0.4.0"; + version = "0.5.0"; src = fetchFromGitHub { owner = "flamegraph-rs"; repo = "flamegraph"; rev = "v${version}"; - sha256 = "sha256-IpmvFUWNaFQ1ls7u625vvj1TnRYXR+X1mAGdBcwRFLk="; + sha256 = "sha256-qxUYqqz6dlpkw6MGHH8iPfZcbc3/ZF1E+C8arISSTdY="; }; - cargoSha256 = "sha256-ccy5ZFS2Gp4Dwo8gsS6vzHHO1siicOp7uZTsCh6SKsM="; + cargoSha256 = "sha256-qJEhcqa78QW9X5ZD3Jy2BfRh/SkOhqBLzTT00u4DM0Q="; nativeBuildInputs = lib.optionals stdenv.isLinux [ makeWrapper ]; buildInputs = lib.optionals stdenv.isDarwin [ diff --git a/pkgs/development/tools/checkmake/default.nix b/pkgs/development/tools/checkmake/default.nix index 3c21af8ff38d..78d193a12925 100644 --- a/pkgs/development/tools/checkmake/default.nix +++ b/pkgs/development/tools/checkmake/default.nix @@ -37,7 +37,7 @@ buildGoPackage rec { meta = with lib; { description = "Experimental tool for linting and checking Makefiles"; - homepage = https://github.com/mrtazz/checkmake; + homepage = "https://github.com/mrtazz/checkmake"; license = licenses.mit; maintainers = with maintainers; [ vidbina ]; platforms = platforms.linux; diff --git a/pkgs/development/tools/continuous-integration/github-runner/default.nix b/pkgs/development/tools/continuous-integration/github-runner/default.nix index d9d7cfd55442..97312c835f51 100644 --- a/pkgs/development/tools/continuous-integration/github-runner/default.nix +++ b/pkgs/development/tools/continuous-integration/github-runner/default.nix @@ -37,13 +37,13 @@ let in stdenv.mkDerivation rec { pname = "github-runner"; - version = "2.283.3"; + version = "2.284.0"; src = fetchFromGitHub { owner = "actions"; repo = "runner"; rev = "v${version}"; - sha256 = "sha256-B2dn3AIGk+xMFqRsKv4pvlZ6K4xySsS0klk8vN8giso="; + sha256 = "sha256-JR0OzbT5gGhO/dxb/eSjP/d/VxW/aLmTs/oPwN8b8Rc="; }; nativeBuildInputs = [ diff --git a/pkgs/development/tools/continuous-integration/hci/default.nix b/pkgs/development/tools/continuous-integration/hci/default.nix index dfca0c4d388e..5c0c59845ce6 100644 --- a/pkgs/development/tools/continuous-integration/hci/default.nix +++ b/pkgs/development/tools/continuous-integration/hci/default.nix @@ -1,13 +1,12 @@ { haskell, haskellPackages, lib, makeWrapper, runc, stdenv }: let - inherit (haskell.lib) overrideCabal addBuildDepends; + inherit (haskell.lib.compose) overrideCabal addBuildDepends justStaticExecutables; inherit (lib) makeBinPath; bundledBins = lib.optional stdenv.isLinux runc; pkg = # justStaticExecutables is needed due to https://github.com/NixOS/nix/issues/2990 overrideCabal - (addBuildDepends (haskell.lib.justStaticExecutables haskellPackages.hercules-ci-cli) [ makeWrapper ]) (o: { postInstall = '' ${o.postInstall or ""} @@ -15,7 +14,8 @@ let mv $out/bin/hci $out/libexec makeWrapper $out/libexec/hci $out/bin/hci --prefix PATH : ${makeBinPath bundledBins} ''; - }); + }) + (addBuildDepends [ makeWrapper ] (justStaticExecutables haskellPackages.hercules-ci-cli)); in pkg // { meta = pkg.meta // { position = toString ./default.nix + ":1"; diff --git a/pkgs/development/tools/continuous-integration/hercules-ci-agent/default.nix b/pkgs/development/tools/continuous-integration/hercules-ci-agent/default.nix index bc464c2024e4..00ae501e5348 100644 --- a/pkgs/development/tools/continuous-integration/hercules-ci-agent/default.nix +++ b/pkgs/development/tools/continuous-integration/hercules-ci-agent/default.nix @@ -1,13 +1,12 @@ { gnutar, gzip, git, haskell, haskellPackages, lib, makeWrapper, nixos, runc, stdenv }: let - inherit (haskell.lib) overrideCabal addBuildDepends; + inherit (haskell.lib.compose) overrideCabal addBuildDepends justStaticExecutables; inherit (lib) makeBinPath; bundledBins = [ gnutar gzip git ] ++ lib.optional stdenv.isLinux runc; pkg = # justStaticExecutables is needed due to https://github.com/NixOS/nix/issues/2990 overrideCabal - (addBuildDepends (haskell.lib.justStaticExecutables haskellPackages.hercules-ci-agent) [ makeWrapper ]) (o: { postInstall = '' ${o.postInstall or ""} @@ -15,7 +14,8 @@ let mv $out/bin/hercules-ci-agent $out/libexec makeWrapper $out/libexec/hercules-ci-agent $out/bin/hercules-ci-agent --prefix PATH : ${makeBinPath bundledBins} ''; - }); + }) + (addBuildDepends [ makeWrapper ] (justStaticExecutables haskellPackages.hercules-ci-agent)); in pkg.overrideAttrs (o: { meta = o.meta // { position = toString ./default.nix + ":1"; diff --git a/pkgs/development/tools/database/litestream/default.nix b/pkgs/development/tools/database/litestream/default.nix index 3f70f39da951..7468aa55d618 100644 --- a/pkgs/development/tools/database/litestream/default.nix +++ b/pkgs/development/tools/database/litestream/default.nix @@ -4,13 +4,13 @@ }: buildGoModule rec { pname = "litestream"; - version = "0.3.5"; + version = "0.3.6"; src = fetchFromGitHub { owner = "benbjohnson"; repo = pname; rev = "v${version}"; - sha256 = "sha256-OQ8j0FOUWU5TfCl4AZpmX5tuhtHAbrhvzT6ve6AJNn0="; + sha256 = "sha256-A1okmeX3njyRXFKcXJPSV7Hg8Q/P7WqpGz2HThDdUQo="; }; ldflags = [ diff --git a/pkgs/development/tools/database/pgcli/default.nix b/pkgs/development/tools/database/pgcli/default.nix index bb8e983fa715..9fa8685734e8 100644 --- a/pkgs/development/tools/database/pgcli/default.nix +++ b/pkgs/development/tools/database/pgcli/default.nix @@ -46,7 +46,11 @@ buildPythonApplication rec { checkInputs = [ pytestCheckHook mock ]; - disabledTests = lib.optionals stdenv.isDarwin [ "test_application_name_db_uri" ]; + disabledTests = [ + # tests that expect output from an older version of cli-helpers + "test_format_output" + "test_format_output_auto_expand" + ] ++ lib.optionals stdenv.isDarwin [ "test_application_name_db_uri" ]; meta = with lib; { description = "Command-line interface for PostgreSQL"; diff --git a/pkgs/development/tools/database/prisma-engines/default.nix b/pkgs/development/tools/database/prisma-engines/default.nix index 977f05aea5c6..91681a5a9a0b 100644 --- a/pkgs/development/tools/database/prisma-engines/default.nix +++ b/pkgs/development/tools/database/prisma-engines/default.nix @@ -10,19 +10,19 @@ rustPlatform.buildRustPackage rec { pname = "prisma-engines"; - version = "3.2.0"; + version = "3.4.0"; src = fetchFromGitHub { owner = "prisma"; repo = "prisma-engines"; rev = version; - sha256 = "sha256-q0MF6LyIB7dCotYlXiZ4rXl2xMOLqXe5Y+zO+bpoCoY="; + sha256 = "sha256-EuGGGTHBXm6crnoh5h0DYZZHUtzY4W0wlNgMAxbEb5w="; }; # Use system openssl. OPENSSL_NO_VENDOR = 1; - cargoSha256 = "sha256-NAXoKz+tZmjmZ/PkDaXEp9D++iu/3Knp0Yy6NJWEoDM="; + cargoSha256 = "sha256-CwNe4Qsswh+jMFMpg7DEM9Hq2YeEMcN4UTFMd8AEekw="; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/development/tools/database/sqlfluff/default.nix b/pkgs/development/tools/database/sqlfluff/default.nix index ada19ed158fa..559aeb18c267 100644 --- a/pkgs/development/tools/database/sqlfluff/default.nix +++ b/pkgs/development/tools/database/sqlfluff/default.nix @@ -5,14 +5,14 @@ python3.pkgs.buildPythonApplication rec { pname = "sqlfluff"; - version = "0.7.1"; + version = "0.8.1"; disabled = python3.pythonOlder "3.6"; src = fetchFromGitHub { owner = pname; repo = pname; rev = version; - sha256 = "sha256-kNoUoelD4EiNWZlXvOrWNPX+wsLCwY3329rJf83l7Wg="; + sha256 = "sha256-p2vRHJ7IDjGpAqWLkAHIjNCFRvUfpkvwVtixz8wWR8I="; }; propagatedBuildInputs = with python3.pkgs; [ @@ -28,6 +28,7 @@ python3.pkgs.buildPythonApplication rec { pytest tblib toml + tqdm typing-extensions ] ++ lib.optionals (pythonOlder "3.7") [ dataclasses diff --git a/pkgs/development/tools/database/sqlitebrowser/default.nix b/pkgs/development/tools/database/sqlitebrowser/default.nix index 0a4df4bd21b7..aa5e2d8f6e0e 100644 --- a/pkgs/development/tools/database/sqlitebrowser/default.nix +++ b/pkgs/development/tools/database/sqlitebrowser/default.nix @@ -1,5 +1,6 @@ -{ mkDerivation, lib, fetchFromGitHub, cmake -, qtbase, qttools, sqlcipher, wrapGAppsHook }: +{ lib, stdenv, mkDerivation, fetchFromGitHub, cmake +, qtbase, qttools, sqlcipher, wrapGAppsHook, qtmacextras +}: mkDerivation rec { pname = "sqlitebrowser"; @@ -16,7 +17,7 @@ mkDerivation rec { # but qscintilla is currently in a bit of a mess as some consumers expect a # -qt4 or -qt5 prefix while others do not. # We *really* should get that cleaned up. - buildInputs = [ qtbase sqlcipher ]; + buildInputs = [ qtbase sqlcipher ] ++ lib.optionals stdenv.isDarwin [ qtmacextras ]; nativeBuildInputs = [ cmake qttools wrapGAppsHook ]; diff --git a/pkgs/development/tools/dstp/default.nix b/pkgs/development/tools/dstp/default.nix new file mode 100644 index 000000000000..89661612b4ee --- /dev/null +++ b/pkgs/development/tools/dstp/default.nix @@ -0,0 +1,25 @@ +{ lib, buildGo117Module, fetchFromGitHub }: + +buildGo117Module rec { + pname = "dstp"; + version = "0.3.0"; + + src = fetchFromGitHub { + owner = "ycd"; + repo = pname; + rev = "v${version}"; + sha256 = "1pxzaz2a261lsnbdbr9km1214a4jzq2wgkdfvf9g966gsa4nqfl6"; + }; + + vendorSha256 = "1n1kx4zcskndikjl44vwmckr6x5cv6cacwdwfwjjsf6aqgagpld8"; + + # Tests require network connection, but is not allowed by nix + doCheck = false; + + meta = with lib; { + description = "Run common networking tests against your site"; + homepage = "https://github.com/ycd/dstp"; + license = licenses.mit; + maintainers = with maintainers; [ jlesquembre ]; + }; +} diff --git a/pkgs/development/tools/esbuild/default.nix b/pkgs/development/tools/esbuild/default.nix index 33e3e11f4770..2c8e18f062e3 100644 --- a/pkgs/development/tools/esbuild/default.nix +++ b/pkgs/development/tools/esbuild/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "esbuild"; - version = "0.13.11"; + version = "0.13.12"; src = fetchFromGitHub { owner = "evanw"; repo = "esbuild"; rev = "v${version}"; - sha256 = "sha256-QaSH3TgUgfBrmryAFwxjqCMORu3VwcDkqEHNQ0nX73o="; + sha256 = "sha256-1SjLbrOYEh0g9weVEqcOT7hMr9asxgSr+rKDNP75Sc4="; }; vendorSha256 = "sha256-QPkBR+FscUc3jOvH7olcGUhM6OW4vxawmNJuRQxPuGs="; diff --git a/pkgs/development/tools/faas-cli/default.nix b/pkgs/development/tools/faas-cli/default.nix index d74e9b35a2b6..425d79219c8d 100644 --- a/pkgs/development/tools/faas-cli/default.nix +++ b/pkgs/development/tools/faas-cli/default.nix @@ -4,20 +4,20 @@ let let cpuName = platform.parsed.cpu.name; in { "aarch64" = "arm64"; "armv7l" = "armhf"; + "armv6l" = "armhf"; }.${cpuName} or cpuName; in buildGoModule rec { pname = "faas-cli"; # When updating version change rev. - version = "0.13.13"; - rev = "72816d486cf76c3089b915dfb0b66b85cf096634"; - platform = faasPlatform stdenv.targetPlatform; + version = "0.13.15"; + rev = "b562392b12a78a11bcff9c6fca5a47146ea2ba0a"; src = fetchFromGitHub { owner = "openfaas"; repo = "faas-cli"; rev = version; - sha256 = "0mmrakyy2qmkldld7pxf5bx6whdadq2r52b68f9p9z7yqrdimix8"; + sha256 = "15kjxn0p8nz8147vsm9q5q6wr2w5ssybvn247kynj2n7139iva2f"; }; CGO_ENABLED = 0; @@ -30,7 +30,7 @@ buildGoModule rec { "-s" "-w" "-X github.com/openfaas/faas-cli/version.GitCommit=${rev}" "-X github.com/openfaas/faas-cli/version.Version=${version}" - "-X github.com/openfaas/faas-cli/commands.Platform=${platform}" + "-X github.com/openfaas/faas-cli/commands.Platform=${faasPlatform stdenv.targetPlatform}" ]; meta = with lib; { @@ -38,5 +38,13 @@ buildGoModule rec { description = "Official CLI for OpenFaaS "; license = licenses.mit; maintainers = with maintainers; [ welteki ]; + platforms = [ + "x86_64-linux" + "x86_64-darwin" + "aarch64-linux" + "aarch64-darwin" + "armv7l-linux" + "armv6l-linux" + ]; }; } diff --git a/pkgs/development/tools/flyway/default.nix b/pkgs/development/tools/flyway/default.nix index 4674ae5170ae..0e1d18d2eb1c 100644 --- a/pkgs/development/tools/flyway/default.nix +++ b/pkgs/development/tools/flyway/default.nix @@ -3,7 +3,7 @@ stdenv.mkDerivation rec{ pname = "flyway"; version = "7.13.0"; src = fetchurl { - url = "https://repo1.maven.org/maven2/org/flywaydb/flyway-commandline/${version}/flyway-commandline-${version}.tar.gz"; + url = "mirror://maven/org/flywaydb/flyway-commandline/${version}/flyway-commandline-${version}.tar.gz"; sha256 = "sha256-rZUVxswJdCFKwuXlzko+t+ZO1plRgH2VcZFJ5kkiM2s="; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/development/tools/fortran-language-server/default.nix b/pkgs/development/tools/fortran-language-server/default.nix new file mode 100644 index 000000000000..2c606ab715b5 --- /dev/null +++ b/pkgs/development/tools/fortran-language-server/default.nix @@ -0,0 +1,21 @@ +{ lib, fetchPypi, buildPythonApplication }: + +buildPythonApplication rec { + pname = "fortran-language-server"; + version = "1.12.0"; + + src = fetchPypi { + inherit pname version; + sha256 = "7Dkh7yPX4rULkzfJFxg47YxrCaxuHk+k3TOINHS9T5A="; + }; + + checkPhase = "$out/bin/fortls --help 1>/dev/null"; + pythonImportsCheck = [ "fortls" ]; + + meta = with lib; { + description = "FORTRAN Language Server for the Language Server Protocol"; + homepage = "https://pypi.org/project/fortran-language-server/"; + license = [ licenses.mit ]; + maintainers = [ maintainers.sheepforce ]; + }; +} diff --git a/pkgs/development/tools/git-aggregator/default.nix b/pkgs/development/tools/git-aggregator/default.nix index a6599c667c86..9b2465366f67 100644 --- a/pkgs/development/tools/git-aggregator/default.nix +++ b/pkgs/development/tools/git-aggregator/default.nix @@ -1,17 +1,18 @@ -{ git, lib, python3Packages }: +{ lib, git, python3Packages }: python3Packages.buildPythonApplication rec { pname = "git-aggregator"; - version = "1.8.1"; + version = "2.1.0"; src = python3Packages.fetchPypi { inherit pname version; - hash = "sha256-LLsyhyhPmOOvPzwEEJwkhrDfBMFueA7kuDlnrqwr08k="; + sha256 = "sha256-79xNPzYP1j71sU5wZM5e2xTqQExqQEdxXPxbk4T/Scw="; }; nativeBuildInputs = with python3Packages; [ setuptools-scm ]; + propagatedBuildInputs = with python3Packages; [ argcomplete colorama @@ -25,13 +26,15 @@ python3Packages.buildPythonApplication rec { ]; preCheck = '' - export HOME=`mktemp -d` + export HOME="$(mktemp -d)" git config --global user.name John git config --global user.email john@localhost + git config --global init.defaultBranch master + git config --global pull.rebase false ''; meta = with lib; { - description = "Manage the aggregation of git branches from different remotes to build a consolidated one."; + description = "Manage the aggregation of git branches from different remotes to build a consolidated one"; homepage = "https://github.com/acsone/git-aggregator"; license = licenses.agpl3Plus; maintainers = with maintainers; [ lourkeur ]; diff --git a/pkgs/development/tools/golangci-lint/default.nix b/pkgs/development/tools/golangci-lint/default.nix index 2c37a5281b73..a142d9a9d9bf 100644 --- a/pkgs/development/tools/golangci-lint/default.nix +++ b/pkgs/development/tools/golangci-lint/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "golangci-lint"; - version = "1.42.1"; + version = "1.43.0"; src = fetchFromGitHub { owner = "golangci"; repo = "golangci-lint"; rev = "v${version}"; - sha256 = "sha256-lhpljK4odn+j+Cb3sp1/cMnBRrLNhWxVoRIO2PDqMHo="; + sha256 = "sha256-8aIKFLP1x9B5IMuyQ12LLIq79of4XwCdmDwae4T5MPg="; }; - vendorSha256 = "sha256-Z4lNGWLKagKHbVOy6MiKyuSlXwUCYlkvnvk5zS4vl1A="; + vendorSha256 = "sha256-Mxy9VFBwcxyQtnhwuOFWK+0y0pQQDdqtoj0e2UXEo5k="; doCheck = false; diff --git a/pkgs/development/tools/halfempty/default.nix b/pkgs/development/tools/halfempty/default.nix index 5b96d338f52f..35fdf7702a87 100644 --- a/pkgs/development/tools/halfempty/default.nix +++ b/pkgs/development/tools/halfempty/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchFromGitHub, pkg-config, glib, util-linux, scowl }: +{ lib, stdenv, fetchFromGitHub, fetchpatch, pkg-config, glib, util-linux, scowl }: stdenv.mkDerivation rec { pname = "halfempty"; @@ -16,6 +16,14 @@ stdenv.mkDerivation rec { enableParallelBuilding = true; + patches = [ + (fetchpatch { + name = "fix-bash-specific-syntax.patch"; + url = "https://github.com/googleprojectzero/halfempty/commit/ad15964d0fcaba12e5aca65c8935ebe3f37d7ea3.patch"; + sha256 = "sha256:0hgdci0wwi5wyw8i57w0545cxjmsmswm1y6g4vhykap0y40zizav"; + }) + ]; + postPatch = '' substituteInPlace test/Makefile \ --replace '/usr/share/dict/words' '${scowl}/share/dict/words.txt' diff --git a/pkgs/development/tools/haskell/dconf2nix/default.nix b/pkgs/development/tools/haskell/dconf2nix/default.nix index cfd391866ee3..4cc137b54f75 100644 --- a/pkgs/development/tools/haskell/dconf2nix/default.nix +++ b/pkgs/development/tools/haskell/dconf2nix/default.nix @@ -2,12 +2,12 @@ let dconf2nix = - haskell.lib.justStaticExecutables - (haskell.lib.overrideCabal haskellPackages.dconf2nix (oldAttrs: { + haskell.lib.compose.justStaticExecutables + (haskell.lib.compose.overrideCabal (oldAttrs: { maintainers = (oldAttrs.maintainers or []) ++ [ lib.maintainers.gvolpe ]; - })); + }) haskellPackages.dconf2nix); in dconf2nix.overrideAttrs (oldAttrs: { diff --git a/pkgs/development/tools/haskell/haskell-language-server/withWrapper.nix b/pkgs/development/tools/haskell/haskell-language-server/withWrapper.nix index 7e8839b2e726..9f67317d71f0 100644 --- a/pkgs/development/tools/haskell/haskell-language-server/withWrapper.nix +++ b/pkgs/development/tools/haskell/haskell-language-server/withWrapper.nix @@ -11,8 +11,8 @@ let inherit (lib) concatStringsSep concatMapStringsSep take splitString; getPackages = version: haskell.packages."ghc${version}"; tunedHls = hsPkgs: - haskell.lib.justStaticExecutables - (haskell.lib.overrideCabal hsPkgs.haskell-language-server (old: { + haskell.lib.compose.justStaticExecutables + (haskell.lib.compose.overrideCabal (old: { postInstall = '' remove-references-to -t ${hsPkgs.ghc} $out/bin/haskell-language-server remove-references-to -t ${hsPkgs.shake.data} $out/bin/haskell-language-server @@ -20,7 +20,7 @@ let remove-references-to -t ${hsPkgs.js-dgtable.data} $out/bin/haskell-language-server remove-references-to -t ${hsPkgs.js-flot.data} $out/bin/haskell-language-server ''; - })); + }) hsPkgs.haskell-language-server); targets = version: let packages = getPackages version; in [ diff --git a/pkgs/development/tools/haskell/hyper-haskell/default.nix b/pkgs/development/tools/haskell/hyper-haskell/default.nix index 2b3fb76903e5..331f78f7a1e2 100644 --- a/pkgs/development/tools/haskell/hyper-haskell/default.nix +++ b/pkgs/development/tools/haskell/hyper-haskell/default.nix @@ -49,5 +49,8 @@ in stdenvNoCC.mkDerivation rec { homepage = "https://github.com/HeinrichApfelmus/hyper-haskell"; license = licenses.bsd3; maintainers = [ maintainers.rvl ]; + # depends on electron-10.4.7 which is marked as insecure: + # https://github.com/NixOS/nixpkgs/pull/142641#issuecomment-957358476 + broken = true; }; } diff --git a/pkgs/development/tools/haskell/lambdabot/default.nix b/pkgs/development/tools/haskell/lambdabot/default.nix index 5e372b4f3874..0b0a9778c361 100644 --- a/pkgs/development/tools/haskell/lambdabot/default.nix +++ b/pkgs/development/tools/haskell/lambdabot/default.nix @@ -23,7 +23,7 @@ let allPkgs = pkgs: mueval.defaultPkgs pkgs ++ [ pkgs.lambdabot-trusted ] ++ pac modulesStr = lib.replaceChars ["\n"] [" "] modules; configStr = lib.replaceChars ["\n"] [" "] configuration; -in haskellLib.overrideCabal haskellPackages.lambdabot (self: { +in haskellLib.overrideCabal (self: { patches = (self.patches or []) ++ [ ./custom-config.patch ]; postPatch = (self.postPatch or "") + '' substituteInPlace src/Main.hs \ @@ -38,4 +38,4 @@ in haskellLib.overrideCabal haskellPackages.lambdabot (self: { wrapProgram $out/bin/lambdabot \ --prefix PATH ":" '${bins}' ''; -}) +}) haskellPackages.lambdabot diff --git a/pkgs/development/tools/img/default.nix b/pkgs/development/tools/img/default.nix index 5b0a40adf232..17daf49ff230 100644 --- a/pkgs/development/tools/img/default.nix +++ b/pkgs/development/tools/img/default.nix @@ -50,6 +50,6 @@ buildGoModule rec { description = "Standalone, daemon-less, unprivileged Dockerfile and OCI compatible container image builder. "; license = licenses.mit; homepage = "https://github.com/genuinetools/img"; - maintainers = with maintainers; [ ]; + maintainers = with maintainers; [ bryanasdev000 ]; }; } diff --git a/pkgs/development/tools/java/dex2jar/default.nix b/pkgs/development/tools/java/dex2jar/default.nix index b20a80355a02..6ac1d0dbb1ca 100644 --- a/pkgs/development/tools/java/dex2jar/default.nix +++ b/pkgs/development/tools/java/dex2jar/default.nix @@ -35,7 +35,7 @@ stdenv.mkDerivation rec { ''; meta = with lib; { - homepage = https://sourceforge.net/projects/dex2jar/; + homepage = "https://sourceforge.net/projects/dex2jar/"; description = "Tools to work with android .dex and java .class files"; maintainers = with maintainers; [ makefu ]; license = licenses.asl20; diff --git a/pkgs/development/tools/jbang/default.nix b/pkgs/development/tools/jbang/default.nix index b1263379369f..0bbd46b4294c 100644 --- a/pkgs/development/tools/jbang/default.nix +++ b/pkgs/development/tools/jbang/default.nix @@ -1,12 +1,12 @@ { stdenv, lib, fetchzip, jdk, makeWrapper, coreutils, curl }: stdenv.mkDerivation rec { - version = "0.80.1"; + version = "0.82.1"; pname = "jbang"; src = fetchzip { url = "https://github.com/jbangdev/jbang/releases/download/v${version}/${pname}-${version}.tar"; - sha256 = "sha256-Hc0/4nN67FqmcLmAUU0GbWYwnPFiDHSwCRrlqbphWHA="; + sha256 = "sha256-C2zsIJvna7iqcaCM4phJonbA9TALL89rACms5II9hhU="; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/development/tools/jet/default.nix b/pkgs/development/tools/jet/default.nix new file mode 100644 index 000000000000..9ba85cb8fc4f --- /dev/null +++ b/pkgs/development/tools/jet/default.nix @@ -0,0 +1,59 @@ +{ stdenv, lib, graalvm11-ce, fetchurl }: + +stdenv.mkDerivation rec { + pname = "jet"; + version = "0.1.0"; + + src = fetchurl { + url = "https://github.com/borkdude/${pname}/releases/download/v${version}/${pname}-${version}-standalone.jar"; + sha256 = "sha256-RCEIIZfPmOLW3akjEgaEas4xOtYxL6lQsxDv2szB8K4"; + }; + + reflectionJson = fetchurl { + url = "https://raw.githubusercontent.com/borkdude/${pname}/v${version}/reflection.json"; + sha256 = "sha256-mOUiKEM5tYhtpBpm7KtslyPYFsJ+Wr+4ul6Zi4aS09Q="; + }; + + dontUnpack = true; + + buildInputs = [ graalvm11-ce ]; + + buildPhase = '' + runHook preBuild + + # https://github.com/borkdude/jet/blob/v0.1.0/script/compile#L16-L29 + args=("-jar" "$src" + "-H:CLibraryPath=${graalvm11-ce.lib}/lib" + # Required to build jet on darwin. Do not remove. + "${lib.optionalString stdenv.isDarwin "-H:-CheckToolchain"}" + "-H:Name=jet" + "-H:+ReportExceptionStackTraces" + "-J-Dclojure.spec.skip-macros=true" + "-J-Dclojure.compiler.direct-linking=true" + "-H:IncludeResources=JET_VERSION" + "-H:ReflectionConfigurationFiles=${reflectionJson}" + "--initialize-at-build-time" + "-H:Log=registerResource:" + "--verbose" + "--no-fallback" + "--no-server" + "-J-Xmx3g") + + native-image ''${args[@]} + + runHook postBuild + ''; + + installPhase = '' + mkdir -p $out/bin + cp jet $out/bin/jet + ''; + + meta = with lib; { + description = "CLI to transform between JSON, EDN and Transit, powered with a minimal query language"; + homepage = "https://github.com/borkdude/jet"; + license = licenses.epl10; + platforms = graalvm11-ce.meta.platforms; + maintainers = with maintainers; [ ericdallo ]; + }; +} diff --git a/pkgs/development/tools/just/default.nix b/pkgs/development/tools/just/default.nix index 8306092c5318..2d78ec338ac3 100644 --- a/pkgs/development/tools/just/default.nix +++ b/pkgs/development/tools/just/default.nix @@ -2,15 +2,15 @@ rustPlatform.buildRustPackage rec { pname = "just"; - version = "0.10.2"; + version = "0.10.3"; src = fetchFromGitHub { owner = "casey"; repo = pname; rev = version; - sha256 = "sha256-AR1bNsyex+kfXdiSF3QgeqK8qwIssLfaaY0qNhnp7ak="; + sha256 = "sha256-r6kP1LbT8ZQoxSuy7jpnHD2/RgcPvmTNfjKzj5ceXRc="; }; - cargoSha256 = "sha256-Ukhp8mPXD/dDolfSugOCVwRMgkjmDRCoNzthgqrN6p0="; + cargoSha256 = "sha256-y6RcFH2qDoM3wWnZ6ewC9QyRD3mFsoakToRmon4bAnE="; nativeBuildInputs = [ installShellFiles ]; buildInputs = lib.optionals stdenv.isDarwin [ libiconv ]; diff --git a/pkgs/development/tools/krew/default.nix b/pkgs/development/tools/krew/default.nix index f0d0f1865114..69efbb3d209b 100644 --- a/pkgs/development/tools/krew/default.nix +++ b/pkgs/development/tools/krew/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "krew"; - version = "0.4.1"; + version = "0.4.2"; src = fetchFromGitHub { owner = "kubernetes-sigs"; repo = "krew"; rev = "v${version}"; - sha256 = "sha256-+YwBkXrj5sWlMA01GfBhu12st+es5YygkD16jc+blt8="; + sha256 = "sha256-P4b8HMkqxzYKz9OgI4pNCjR9Wakh+kIIAnUAkayzGEo="; }; - vendorSha256 = "sha256-49kWaU5dYqd86DvHi3mh5jYUQVmFlI8zsWtAFseYriE="; + vendorSha256 = "sha256-FQQCHq9f0yY8vSsvWIR7WKq+0c+dgGEnoQmXtoN6Ep0="; subPackages = [ "cmd/krew" ]; diff --git a/pkgs/development/tools/kubeprompt/default.nix b/pkgs/development/tools/kubeprompt/default.nix index 7b60e870958e..3624a45f9340 100644 --- a/pkgs/development/tools/kubeprompt/default.nix +++ b/pkgs/development/tools/kubeprompt/default.nix @@ -2,17 +2,18 @@ buildGoModule rec { pname = "kubeprompt"; - version = "0.3.0"; + version = "0.4.0"; src = fetchFromGitHub { owner = "jlesquembre"; repo = pname; rev = version; - sha256 = "1a0xi31bd7n2zrx2z4srhvixlbj028h63dlrjzqxgmgn2w6akbz2"; + sha256 = "0ib61af6fwsl35gmid9jj0fp8zxgzrw4qk32r03hxzkh9g7r3kla"; }; ldflags = [ - "-w" "-s" + "-w" + "-s" "-X github.com/jlesquembre/kubeprompt/pkg/version.Version=${version}" ]; diff --git a/pkgs/development/tools/kubepug/default.nix b/pkgs/development/tools/kubepug/default.nix index df619086861d..4795d35e7e6c 100644 --- a/pkgs/development/tools/kubepug/default.nix +++ b/pkgs/development/tools/kubepug/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "kubepug"; - version = "1.1.3"; + version = "1.2.2"; src = fetchFromGitHub { owner = "rikatz"; repo = "kubepug"; rev = "v${version}"; - sha256 = "094c1qfmsdmy963bxs6lq3xh1zpfdfh16vlhfwi9yywmgcynb3b6"; + sha256 = "sha256-jQ/LzwxYxfCKiu+2VhjQ3YWwLEqZkYrH7+olBOMUA1A="; }; - vendorSha256 = "0jzry4znq4kcl6i9jcawilyjm8av1zxbml6nlr96v8x47ijxav5j"; + vendorSha256 = "sha256-P5HoU9AAGFrSrp9iymjW+r8w5L90KUOrmaXM8p+Wn44="; ldflags = [ "-s" "-w" "-X=github.com/rikatz/kubepug/version.Version=${src.rev}" diff --git a/pkgs/development/tools/lazygit/default.nix b/pkgs/development/tools/lazygit/default.nix index 21d9f9903d26..7f335d744f69 100644 --- a/pkgs/development/tools/lazygit/default.nix +++ b/pkgs/development/tools/lazygit/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "lazygit"; - version = "0.29"; + version = "0.30.1"; src = fetchFromGitHub { owner = "jesseduffield"; repo = pname; rev = "v${version}"; - sha256 = "sha256-rw03K21Ay/+XKs06cUBybXLp8Rxrlz8T8YKrSGroyDU="; + sha256 = "sha256-8oyUI8jqJOJT1bZE25HlFA39gs3dcZbTL/vrL40K1IM="; }; vendorSha256 = null; diff --git a/pkgs/development/tools/metal-cli/default.nix b/pkgs/development/tools/metal-cli/default.nix index 92aca00259fe..c5488cdb900a 100644 --- a/pkgs/development/tools/metal-cli/default.nix +++ b/pkgs/development/tools/metal-cli/default.nix @@ -13,10 +13,6 @@ buildGoModule rec { vendorSha256 = "sha256-ifSfeJjrZI1Hrsq64zAGBiLVc8GKvq+Ddg26gQooyTs="; - postInstall = '' - ln -s $out/bin/metal-cli $out/bin/metal - ''; - doCheck = false; meta = with lib; { diff --git a/pkgs/development/tools/metals/default.nix b/pkgs/development/tools/metals/default.nix index fc074da137ac..a5b8540db45a 100644 --- a/pkgs/development/tools/metals/default.nix +++ b/pkgs/development/tools/metals/default.nix @@ -2,7 +2,7 @@ stdenv.mkDerivation rec { pname = "metals"; - version = "0.10.8"; + version = "0.10.9"; deps = stdenv.mkDerivation { name = "${pname}-deps-${version}"; @@ -16,7 +16,7 @@ stdenv.mkDerivation rec { ''; outputHashMode = "recursive"; outputHashAlgo = "sha256"; - outputHash = "sha256-K/Pjo5VD9w4knelK0YwXFoZOzJDzjzlMjHF6fJZo524="; + outputHash = "sha256-Z0wngo7FP5sHpmPkTwitqTvNL0IEqqWwccy3mZpTIKU="; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/development/tools/misc/clojure-lsp/default.nix b/pkgs/development/tools/misc/clojure-lsp/default.nix index 30028375420b..9128b3f190e1 100644 --- a/pkgs/development/tools/misc/clojure-lsp/default.nix +++ b/pkgs/development/tools/misc/clojure-lsp/default.nix @@ -2,33 +2,37 @@ stdenv.mkDerivation rec { pname = "clojure-lsp"; - version = "2021.09.30-15.28.01"; + version = "2021.11.02-15.24.47"; src = fetchFromGitHub { owner = pname; repo = pname; rev = version; - sha256 = "i7HCVcQa35pRnk7uXf+8PQ4IMpdSVrT7FKvguvzOvj4="; + sha256 = "sha256-PBbo8yx4g4SsViUA1jnwqF8q9Dfn3lrgK2CP026Bm4Q="; }; jar = fetchurl { url = "https://github.com/clojure-lsp/clojure-lsp/releases/download/${version}/clojure-lsp.jar"; - sha256 = "27a1ca0ca96cf0b5177a76679c6b7d09e6e02dca4c85fd252f7b2c43ef39b89a"; + sha256 = "sha256-k0mzibcLAspklCPE6f2qsUm9bwSvcJRgWecMBq7mpF0="; }; GRAALVM_HOME = graalvm11-ce; CLOJURE_LSP_JAR = jar; - CLOJURE_LSP_XMX = "-J-Xmx4g"; + CLOJURE_LSP_XMX = "-J-Xmx6g"; buildInputs = [ graalvm11-ce clojure ]; buildPhase = with lib; '' runHook preBuild - # https://github.com/clojure-lsp/clojure-lsp/blob/2021.09.30-15.28.01/graalvm/native-unix-compile.sh#L19-L24 + # https://github.com/clojure-lsp/clojure-lsp/blob/2021.11.02-15.24.47/graalvm/native-unix-compile.sh#L18-L27 + DTLV_LIB_EXTRACT_DIR=$(mktemp -d) + export DTLV_LIB_EXTRACT_DIR=$DTLV_LIB_EXTRACT_DIR + args=("-jar" "$CLOJURE_LSP_JAR" - "-H:CLibraryPath=${graalvm11-ce.lib}/lib" "-H:+ReportExceptionStackTraces" + "-H:CLibraryPath=${graalvm11-ce.lib}/lib" + "-H:CLibraryPath=$DTLV_LIB_EXTRACT_DIR" "--verbose" "--no-fallback" "--native-image-info" @@ -85,5 +89,8 @@ stdenv.mkDerivation rec { license = licenses.mit; maintainers = with maintainers; [ ericdallo babariviere ]; platforms = graalvm11-ce.meta.platforms; + # Depends on datalevin that is x86_64 only + # https://github.com/juji-io/datalevin/blob/bb7d9328f4739cddea5d272b5cd6d6dcb5345da6/native/src/java/datalevin/ni/Lib.java#L86-L102 + broken = !stdenv.isx86_64; }; } diff --git a/pkgs/development/tools/misc/coreboot-toolchain/default.nix b/pkgs/development/tools/misc/coreboot-toolchain/default.nix index fc8277625a9d..8042fc2522b3 100644 --- a/pkgs/development/tools/misc/coreboot-toolchain/default.nix +++ b/pkgs/development/tools/misc/coreboot-toolchain/default.nix @@ -1,16 +1,32 @@ -{ callPackage, fetchgit, lib, stdenvNoCC -, bison, curl, git, perl -, flex, gnat11, zlib +{ bison +, callPackage +, curl +, fetchgit +, flex +, getopt +, git +, gnat11 +, lib +, perl +, stdenvNoCC +, zlib }: stdenvNoCC.mkDerivation rec { pname = "coreboot-toolchain"; - version = "4.14"; + version = "4.15"; src = fetchgit { url = "https://review.coreboot.org/coreboot"; rev = version; - sha256 = "00xr74yc0kj9rrqa1a8b7bih865qlp9i4zs67ysavkfrjrwwssxm"; + sha256 = "1qsb2ca22h5f0iwc254qsfm7qcn8967ir8aybdxa1pakgmnfsyp9"; + fetchSubmodules = false; + leaveDotGit = true; + postFetch = '' + patchShebangs $out/util/crossgcc/buildgcc + PATH=${lib.makeBinPath [ getopt ]}:$PATH $out/util/crossgcc/buildgcc -W > $out/.crossgcc_version + rm -rf $out/.git + ''; }; nativeBuildInputs = [ bison curl git perl ]; @@ -28,10 +44,11 @@ stdenvNoCC.mkDerivation rec { ) (callPackage ./stable.nix { }) } - patchShebangs util/genbuild_h/genbuild_h.sh util/crossgcc/buildgcc + patchShebangs util/genbuild_h/genbuild_h.sh ''; buildPhase = '' + export CROSSGCC_VERSION=$(cat .crossgcc_version) make crossgcc-i386 CPUS=$NIX_BUILD_CORES DEST=$out ''; diff --git a/pkgs/development/tools/misc/coreboot-toolchain/stable.nix b/pkgs/development/tools/misc/coreboot-toolchain/stable.nix index 62c3043cc6cb..9460353873e4 100644 --- a/pkgs/development/tools/misc/coreboot-toolchain/stable.nix +++ b/pkgs/development/tools/misc/coreboot-toolchain/stable.nix @@ -1,9 +1,9 @@ { fetchurl }: [ { - name = "gmp-6.2.0.tar.xz"; + name = "gmp-6.2.1.tar.xz"; archive = fetchurl { - sha256 = "09hmg8k63mbfrx1x3yy6y1yzbbq85kw5avbibhcgrg9z3ganr3i5"; - url = "mirror://gnu/gmp/gmp-6.2.0.tar.xz"; + sha256 = "1wml97fdmpcynsbw9yl77rj29qibfp652d0w3222zlfx5j8jjj7x"; + url = "mirror://gnu/gmp/gmp-6.2.1.tar.xz"; }; } { @@ -14,31 +14,31 @@ }; } { - name = "mpc-1.2.0.tar.gz"; + name = "mpc-1.2.1.tar.gz"; archive = fetchurl { - sha256 = "19pxx3gwhwl588v496g3aylhcw91z1dk1d5x3a8ik71sancjs3z9"; - url = "mirror://gnu/mpc/mpc-1.2.0.tar.gz"; + sha256 = "0n846hqfqvmsmim7qdlms0qr86f1hck19p12nq3g3z2x74n3sl0p"; + url = "mirror://gnu/mpc/mpc-1.2.1.tar.gz"; }; } { - name = "gcc-8.3.0.tar.xz"; + name = "gcc-11.2.0.tar.xz"; archive = fetchurl { - sha256 = "0b3xv411xhlnjmin2979nxcbnidgvzqdf4nbhix99x60dkzavfk4"; - url = "mirror://gnu/gcc/gcc-8.3.0/gcc-8.3.0.tar.xz"; + sha256 = "12zs6vd2rapp42x154m479hg3h3lsafn3xhg06hp5hsldd9xr3nh"; + url = "mirror://gnu/gcc/gcc-11.2.0/gcc-11.2.0.tar.xz"; }; } { - name = "binutils-2.35.1.tar.xz"; + name = "binutils-2.37.tar.xz"; archive = fetchurl { - sha256 = "01w6xvfy7sjpw8j08k111bnkl27j760bdsi0wjvq44ghkgdr3v9w"; - url = "mirror://gnu/binutils/binutils-2.35.1.tar.xz"; + sha256 = "0b53hhgfnafw27y0c3nbmlfidny2cc5km29pnfffd8r0y0j9f3c2"; + url = "mirror://gnu/binutils/binutils-2.37.tar.xz"; }; } { - name = "acpica-unix2-20200925.tar.gz"; + name = "acpica-unix2-20210331.tar.gz"; archive = fetchurl { - sha256 = "18n6129fkgj85piid7v4zxxksv3h0amqp4p977vcl9xg3bq0zd2w"; - url = "https://acpica.org/sites/acpica/files/acpica-unix2-20200925.tar.gz"; + sha256 = "1h98pvc9iy1c49cid0ppjwk5zsy2m1xbvfqb72pkwkrd4rn35arx"; + url = "https://acpica.org/sites/acpica/files/acpica-unix2-20210331.tar.gz"; }; } { diff --git a/pkgs/development/tools/misc/coreboot-toolchain/update.sh b/pkgs/development/tools/misc/coreboot-toolchain/update.sh index 6f248359c69b..d4c348a5d0c7 100755 --- a/pkgs/development/tools/misc/coreboot-toolchain/update.sh +++ b/pkgs/development/tools/misc/coreboot-toolchain/update.sh @@ -1,9 +1,14 @@ #!/usr/bin/env nix-shell #!nix-shell --pure -i bash -p nix cacert git getopt -rootdir="../../../../../" +if [ ! -d .git ]; then + echo "This script needs to be run from the root directory of nixpkgs. Exiting." + exit 1 +fi -src="$(nix-build $rootdir --no-out-link -A coreboot-toolchain.src)" +pkg_dir="$(dirname "$0")" + +src="$(nix-build . --no-out-link -A coreboot-toolchain.src)" urls=$($src/util/crossgcc/buildgcc -u) tmp=$(mktemp) @@ -28,4 +33,4 @@ echo ']' >> $tmp sed -ie 's/https\:\/\/ftpmirror\.gnu\.org/mirror\:\/\/gnu/g' $tmp -mv $tmp sources.nix +mv $tmp $pkg_dir/sources.nix diff --git a/pkgs/development/tools/misc/intel-gpu-tools/default.nix b/pkgs/development/tools/misc/intel-gpu-tools/default.nix index 62d350593b16..eca59819ba09 100644 --- a/pkgs/development/tools/misc/intel-gpu-tools/default.nix +++ b/pkgs/development/tools/misc/intel-gpu-tools/default.nix @@ -1,37 +1,85 @@ -{ lib, stdenv, fetchurl, pkg-config, libdrm, libpciaccess, cairo, xorgproto, udev -, libX11, libXext, libXv, libXrandr, glib, bison, libunwind, python3, kmod -, procps, utilmacros, gtk-doc, openssl, peg, elfutils +{ lib +, stdenv +, fetchurl +, pkg-config +, libdrm +, libpciaccess +, cairo +, xorgproto +, udev +, libX11 +, libXext +, libXv +, libXrandr +, glib +, bison +, libunwind +, python3 +, kmod +, procps +, utilmacros +, gtk-doc +, docbook_xsl +, openssl +, peg +, elfutils +, meson +, ninja +, valgrind +, xmlrpc_c +, gsl +, alsa-lib +, curl +, json_c +, liboping +, flex +, docutils }: stdenv.mkDerivation rec { pname = "intel-gpu-tools"; - version = "1.25"; + version = "1.26"; src = fetchurl { url = "https://xorg.freedesktop.org/archive/individual/app/igt-gpu-tools-${version}.tar.xz"; - sha256 = "04fx7xclhick3k7fyk9c4mn8mxzf1253j1r0hrvj9sl40j7lsia0"; + sha256 = "1dwvxh1yplsh1a7h3gpp40g91v12cfxy6yy99s1v9yr2kwxikm1n"; }; - nativeBuildInputs = [ pkg-config utilmacros ]; - buildInputs = [ libdrm libpciaccess cairo xorgproto udev libX11 kmod - libXext libXv libXrandr glib bison libunwind python3 procps - gtk-doc openssl peg elfutils ]; + nativeBuildInputs = [ pkg-config utilmacros meson ninja flex bison gtk-doc docutils docbook_xsl ]; + buildInputs = [ + libdrm + libpciaccess + cairo + xorgproto + udev + libX11 + kmod + libXext + libXv + libXrandr + glib + libunwind + python3 + procps + openssl + peg + elfutils + valgrind + xmlrpc_c + gsl + alsa-lib + curl + json_c + liboping + ]; NIX_CFLAGS_COMPILE = [ "-Wno-error=array-bounds" ]; preConfigure = '' - ./autogen.sh + patchShebangs tests man ''; - preBuild = '' - patchShebangs tests - - patchShebangs debugger/system_routine/pre_cpp.py - substituteInPlace tools/Makefile.am --replace '$(CAIRO_CFLAGS)' '$(CAIRO_CFLAGS) $(GLIB_CFLAGS)' - substituteInPlace tests/Makefile.am --replace '$(CAIRO_CFLAGS)' '$(CAIRO_CFLAGS) $(GLIB_CFLAGS)' - ''; - - enableParallelBuilding = true; + hardeningDisable = [ "bindnow" ]; meta = with lib; { homepage = "https://01.org/linuxgraphics/"; diff --git a/pkgs/development/tools/misc/kibana/7.x.nix b/pkgs/development/tools/misc/kibana/7.x.nix index a2b6f740db4c..7a2e0d1d3647 100644 --- a/pkgs/development/tools/misc/kibana/7.x.nix +++ b/pkgs/development/tools/misc/kibana/7.x.nix @@ -4,32 +4,27 @@ , stdenv , makeWrapper , fetchurl -, nodejs-10_x +, nodejs-14_x , coreutils , which }: with lib; let - nodejs = nodejs-10_x; + nodejs = nodejs-14_x; inherit (builtins) elemAt; info = splitString "-" stdenv.hostPlatform.system; arch = elemAt info 0; plat = elemAt info 1; shas = - if enableUnfree - then { - x86_64-linux = "sha256-lTPBppKm51zgKSQtSdO0PgZ/aomvaStwqwYYGNPY4Bo="; - x86_64-darwin = "sha256-d7xHmoASiywDlZCJX/CfUX1VIi4iOcDrqvK0su54MJc="; - } - else { - x86_64-linux = "sha256-+pkKpiXBpLHs72KKNtMJbqipw6eu5XC1xu/iLFCHGRQ="; - x86_64-darwin = "sha256-CyJ5iRXaPgXO2lyy+E24OcGtb9V3e1gMZRIu25bVyzk="; + { + x86_64-linux = "19p9s4sir982bb1zcldrbphhwfs9i11p0q28vgc421iqg10kjlf1"; + x86_64-darwin = "0qq557ngwwakifidyrccga4cadj9k9pzhjwy4msmbcgf5pb86qyc"; + aarch64-linux = "183cp1h8d3n7xfcpcys4hf36palczxa409afyp62kzyzckngy0j8"; }; -in -stdenv.mkDerivation rec { - pname = "kibana${optionalString (!enableUnfree) "-oss"}"; +in stdenv.mkDerivation rec { + pname = "kibana"; version = elk7Version; src = fetchurl { @@ -58,7 +53,7 @@ stdenv.mkDerivation rec { meta = { description = "Visualize logs and time-stamped data"; homepage = "http://www.elasticsearch.org/overview/kibana"; - license = if enableUnfree then licenses.elastic else licenses.asl20; + license = licenses.elastic; maintainers = with maintainers; [ offline basvandijk ]; platforms = with platforms; unix; }; diff --git a/pkgs/development/tools/misc/netcoredbg/default.nix b/pkgs/development/tools/misc/netcoredbg/default.nix new file mode 100644 index 000000000000..1907eb8b3637 --- /dev/null +++ b/pkgs/development/tools/misc/netcoredbg/default.nix @@ -0,0 +1,78 @@ +{ lib, clangStdenv, stdenvNoCC, cmake, fetchFromGitHub, dotnetCorePackages, buildDotnetModule }: +let + pname = "netcoredbg"; + version = "1.2.0-825"; + + # according to CMakeLists.txt, this should be 3.1 even when building for .NET 5 + coreclr-version = "3.1.19"; + coreclr-src = fetchFromGitHub { + owner = "dotnet"; + repo = "coreclr"; + rev = "v${coreclr-version}"; + sha256 = "o1KafmXqNjX9axr6sSxPKrfUX0e+b/4ANiVQt4T2ybw="; + }; + + dotnet-sdk = dotnetCorePackages.sdk_5_0; + + src = fetchFromGitHub { + owner = "Samsung"; + repo = pname; + rev = version; + sha256 = "JQhDI1+bVbOIFNkXixZnFB/5+dzqCbInR0zJvykcFCg="; + }; + + unmanaged = clangStdenv.mkDerivation rec { + inherit src pname version; + + nativeBuildInputs = [ cmake ]; + + # Building the "unmanaged part" still involves compiling C# code. + preBuild = '' + export HOME=$(mktemp -d) + export DOTNET_CLI_TELEMETRY_OPTOUT=1 + export DOTNET_SKIP_FIRST_TIME_EXPERIENCE=1 + ''; + + hardeningDisable = [ "strictoverflow" ]; + + preConfigure = '' + dotnetVersion="$(${dotnet-sdk}/bin/dotnet --list-runtimes | grep -Po '^Microsoft.NETCore.App \K.*?(?= )')" + cmakeFlagsArray+=( + "-DDBGSHIM_RUNTIME_DIR=${dotnet-sdk}/shared/Microsoft.NETCore.App/$dotnetVersion" + ) + ''; + + cmakeFlags = [ + "-DCORECLR_DIR=${coreclr-src}" + "-DDOTNET_DIR=${dotnet-sdk}" + "-DBUILD_MANAGED=0" + ]; + }; + + managed = buildDotnetModule { + inherit pname version src dotnet-sdk; + + projectFile = "src/managed/ManagedPart.csproj"; + nugetDeps = ./deps.nix; + + executables = [ ]; + }; +in +stdenvNoCC.mkDerivation { + inherit pname version; + + buildCommand = '' + mkdir -p $out/share/netcoredbg $out/bin + cp ${unmanaged}/* $out/share/netcoredbg + cp ${managed}/lib/netcoredbg/* $out/share/netcoredbg + ln -s $out/share/netcoredbg/netcoredbg $out/bin/netcoredbg + ''; + + meta = with lib; { + description = "Managed code debugger with MI interface for CoreCLR"; + homepage = "https://github.com/Samsung/netcoredbg"; + license = licenses.mit; + platforms = platforms.unix; + maintainers = [ maintainers.leo60228 ]; + }; +} diff --git a/pkgs/development/tools/misc/netcoredbg/deps.nix b/pkgs/development/tools/misc/netcoredbg/deps.nix new file mode 100644 index 000000000000..cbcef4c1720b --- /dev/null +++ b/pkgs/development/tools/misc/netcoredbg/deps.nix @@ -0,0 +1,84 @@ +{ fetchNuGet }: [ + (fetchNuGet { name = "Microsoft.CodeAnalysis.Analyzers"; version = "1.1.0"; sha256 = "08r667hj2259wbim1p3al5qxkshydykmb7nd9ygbjlg4mmydkapc"; }) + (fetchNuGet { name = "Microsoft.CodeAnalysis.Common"; version = "2.3.0"; sha256 = "1p29v4499qpyh7k7fv1li2y3c688zg95ic8gq9if1nqmjciz5w7p"; }) + (fetchNuGet { name = "Microsoft.CodeAnalysis.CSharp"; version = "2.3.0"; sha256 = "1g893rqc8hmd59hdigq0fwm3w261i7cm1h2wciqp7406f0gz67x5"; }) + (fetchNuGet { name = "Microsoft.CodeAnalysis.CSharp.Scripting"; version = "2.3.0"; sha256 = "121dhnfjd5jzm410dk79s8xk5jvd09xa0w5q3lbpqc7bs4wxmq4p"; }) + (fetchNuGet { name = "Microsoft.CodeAnalysis.Scripting.Common"; version = "2.3.0"; sha256 = "11f11kvgrdgs86ykz4104jx1iw78v6af48hpdrhmr7y7h5334ziq"; }) + (fetchNuGet { name = "Microsoft.CSharp"; version = "4.4.0"; sha256 = "1niyzqqfyhvh4zpxn8bcyyldynqlw0rfr1apwry4b3yrdnjh1hhh"; }) + (fetchNuGet { name = "Microsoft.NETCore.Platforms"; version = "1.1.0"; sha256 = "08vh1r12g6ykjygq5d3vq09zylgb84l63k49jc4v8faw9g93iqqm"; }) + (fetchNuGet { name = "Microsoft.NETCore.Targets"; version = "1.1.0"; sha256 = "193xwf33fbm0ni3idxzbr5fdq3i2dlfgihsac9jj7whj0gd902nh"; }) + (fetchNuGet { name = "NETStandard.Library"; version = "2.0.3"; sha256 = "1fn9fxppfcg4jgypp2pmrpr6awl3qz1xmnri0cygpkwvyx27df1y"; }) + (fetchNuGet { name = "runtime.debian.8-x64.runtime.native.System.Security.Cryptography.OpenSsl"; version = "4.3.0"; sha256 = "16rnxzpk5dpbbl1x354yrlsbvwylrq456xzpsha1n9y3glnhyx9d"; }) + (fetchNuGet { name = "runtime.fedora.23-x64.runtime.native.System.Security.Cryptography.OpenSsl"; version = "4.3.0"; sha256 = "0hkg03sgm2wyq8nqk6dbm9jh5vcq57ry42lkqdmfklrw89lsmr59"; }) + (fetchNuGet { name = "runtime.fedora.24-x64.runtime.native.System.Security.Cryptography.OpenSsl"; version = "4.3.0"; sha256 = "0c2p354hjx58xhhz7wv6div8xpi90sc6ibdm40qin21bvi7ymcaa"; }) + (fetchNuGet { name = "runtime.native.System"; version = "4.3.0"; sha256 = "15hgf6zaq9b8br2wi1i3x0zvmk410nlmsmva9p0bbg73v6hml5k4"; }) + (fetchNuGet { name = "runtime.native.System.IO.Compression"; version = "4.3.0"; sha256 = "1vvivbqsk6y4hzcid27pqpm5bsi6sc50hvqwbcx8aap5ifrxfs8d"; 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version = "4.3.0"; sha256 = "084zc82yi6yllgda0zkgl2ys48sypiswbiwrv7irb3r0ai1fp4vz"; }) + (fetchNuGet { name = "System.IO.FileSystem"; version = "4.3.0"; sha256 = "0z2dfrbra9i6y16mm9v1v6k47f0fm617vlb7s5iybjjsz6g1ilmw"; }) + (fetchNuGet { name = "System.IO.FileSystem.Primitives"; version = "4.3.0"; sha256 = "0j6ndgglcf4brg2lz4wzsh1av1gh8xrzdsn9f0yznskhqn1xzj9c"; }) + (fetchNuGet { name = "System.Linq"; version = "4.3.0"; sha256 = "1w0gmba695rbr80l1k2h4mrwzbzsyfl2z4klmpbsvsg5pm4a56s7"; }) + (fetchNuGet { name = "System.Linq.Expressions"; version = "4.3.0"; sha256 = "0ky2nrcvh70rqq88m9a5yqabsl4fyd17bpr63iy2mbivjs2nyypv"; }) + (fetchNuGet { name = "System.ObjectModel"; version = "4.3.0"; sha256 = "191p63zy5rpqx7dnrb3h7prvgixmk168fhvvkkvhlazncf8r3nc2"; }) + (fetchNuGet { name = "System.Reflection"; version = "4.3.0"; sha256 = "0xl55k0mw8cd8ra6dxzh974nxif58s3k1rjv1vbd7gjbjr39j11m"; }) + (fetchNuGet { name = "System.Reflection.Emit"; version = "4.3.0"; sha256 = "11f8y3qfysfcrscjpjym9msk7lsfxkk4fmz9qq95kn3jd0769f74"; }) + (fetchNuGet { name = "System.Reflection.Emit.ILGeneration"; version = "4.3.0"; sha256 = "0w1n67glpv8241vnpz1kl14sy7zlnw414aqwj4hcx5nd86f6994q"; }) + (fetchNuGet { name = "System.Reflection.Emit.Lightweight"; version = "4.3.0"; sha256 = "0ql7lcakycrvzgi9kxz1b3lljd990az1x6c4jsiwcacrvimpib5c"; }) + (fetchNuGet { name = "System.Reflection.Extensions"; version = "4.3.0"; sha256 = "02bly8bdc98gs22lqsfx9xicblszr2yan7v2mmw3g7hy6miq5hwq"; }) + (fetchNuGet { name = "System.Reflection.Metadata"; version = "1.4.2"; sha256 = "08b7b43vczlliv8k7q43jinjfrxwpljsglw7sxmc6sd7d54pd1vi"; }) + (fetchNuGet { name = "System.Reflection.Primitives"; version = "4.3.0"; sha256 = "04xqa33bld78yv5r93a8n76shvc8wwcdgr1qvvjh959g3rc31276"; }) + (fetchNuGet { name = "System.Reflection.TypeExtensions"; version = "4.3.0"; sha256 = "0y2ssg08d817p0vdag98vn238gyrrynjdj4181hdg780sif3ykp1"; }) + (fetchNuGet { name = "System.Resources.ResourceManager"; version = "4.3.0"; sha256 = "0sjqlzsryb0mg4y4xzf35xi523s4is4hz9q4qgdvlvgivl7qxn49"; }) + (fetchNuGet { name = "System.Runtime"; version = "4.3.0"; sha256 = "066ixvgbf2c929kgknshcxqj6539ax7b9m570cp8n179cpfkapz7"; }) + (fetchNuGet { name = "System.Runtime.Extensions"; version = "4.3.0"; sha256 = "1ykp3dnhwvm48nap8q23893hagf665k0kn3cbgsqpwzbijdcgc60"; }) + (fetchNuGet { name = "System.Runtime.Handles"; version = "4.3.0"; sha256 = "0sw2gfj2xr7sw9qjn0j3l9yw07x73lcs97p8xfc9w1x9h5g5m7i8"; }) + (fetchNuGet { name = "System.Runtime.InteropServices"; version = "4.3.0"; sha256 = "00hywrn4g7hva1b2qri2s6rabzwgxnbpw9zfxmz28z09cpwwgh7j"; }) + (fetchNuGet { name = "System.Runtime.Numerics"; version = "4.3.0"; sha256 = "19rav39sr5dky7afygh309qamqqmi9kcwvz3i0c5700v0c5cg61z"; }) + (fetchNuGet { name = "System.Security.Cryptography.Algorithms"; version = "4.3.0"; sha256 = "03sq183pfl5kp7gkvq77myv7kbpdnq3y0xj7vi4q1kaw54sny0ml"; }) + (fetchNuGet { name = "System.Security.Cryptography.Cng"; version = "4.3.0"; sha256 = "1k468aswafdgf56ab6yrn7649kfqx2wm9aslywjam1hdmk5yypmv"; }) + (fetchNuGet { name = "System.Security.Cryptography.Csp"; version = "4.3.0"; sha256 = "1x5wcrddf2s3hb8j78cry7yalca4lb5vfnkrysagbn6r9x6xvrx1"; }) + (fetchNuGet { name = "System.Security.Cryptography.Encoding"; version = "4.3.0"; sha256 = "1jr6w70igqn07k5zs1ph6xja97hxnb3mqbspdrff6cvssgrixs32"; }) + (fetchNuGet { name = "System.Security.Cryptography.OpenSsl"; version = "4.3.0"; sha256 = "0givpvvj8yc7gv4lhb6s1prq6p2c4147204a0wib89inqzd87gqc"; }) + (fetchNuGet { name = "System.Security.Cryptography.Primitives"; version = "4.3.0"; sha256 = "0pyzncsv48zwly3lw4f2dayqswcfvdwq2nz0dgwmi7fj3pn64wby"; }) + (fetchNuGet { name = "System.Security.Cryptography.X509Certificates"; version = "4.3.0"; sha256 = "0valjcz5wksbvijylxijjxb1mp38mdhv03r533vnx1q3ikzdav9h"; }) + (fetchNuGet { name = "System.Text.Encoding"; version = "4.3.0"; sha256 = "1f04lkir4iladpp51sdgmis9dj4y8v08cka0mbmsy0frc9a4gjqr"; }) + (fetchNuGet { name = "System.Text.Encoding.CodePages"; version = "4.3.0"; sha256 = "0lgxg1gn7pg7j0f942pfdc9q7wamzxsgq3ng248ikdasxz0iadkv"; }) + (fetchNuGet { name = "System.Text.Encoding.Extensions"; version = "4.3.0"; sha256 = "11q1y8hh5hrp5a3kw25cb6l00v5l5dvirkz8jr3sq00h1xgcgrxy"; }) + (fetchNuGet { name = "System.Text.RegularExpressions"; version = "4.3.0"; sha256 = "1bgq51k7fwld0njylfn7qc5fmwrk2137gdq7djqdsw347paa9c2l"; }) + (fetchNuGet { name = "System.Threading"; version = "4.3.0"; sha256 = "0rw9wfamvhayp5zh3j7p1yfmx9b5khbf4q50d8k5rk993rskfd34"; }) + (fetchNuGet { name = "System.Threading.Tasks"; version = "4.3.0"; sha256 = "134z3v9abw3a6jsw17xl3f6hqjpak5l682k2vz39spj4kmydg6k7"; }) + (fetchNuGet { name = "System.Threading.Tasks.Extensions"; version = "4.3.0"; sha256 = "1xxcx2xh8jin360yjwm4x4cf5y3a2bwpn2ygkfkwkicz7zk50s2z"; }) + (fetchNuGet { name = "System.Threading.Tasks.Parallel"; version = "4.3.0"; sha256 = "1rr3qa4hxwyj531s4nb3bwrxnxxwz617i0n9gh6x7nr7dd3ayzgh"; }) + (fetchNuGet { name = "System.Threading.Thread"; version = "4.3.0"; sha256 = "0y2xiwdfcph7znm2ysxanrhbqqss6a3shi1z3c779pj2s523mjx4"; }) + (fetchNuGet { name = "System.ValueTuple"; version = "4.3.0"; sha256 = "1227k7fxbxapq7dms4lvwwjdf3pr1jcsmhy2nzzhj6g6hs530hxn"; }) + (fetchNuGet { name = "System.Xml.ReaderWriter"; version = "4.3.0"; sha256 = "0c47yllxifzmh8gq6rq6l36zzvw4kjvlszkqa9wq3fr59n0hl3s1"; }) + (fetchNuGet { name = "System.Xml.XDocument"; version = "4.3.0"; sha256 = "08h8fm4l77n0nd4i4fk2386y809bfbwqb7ih9d7564ifcxr5ssxd"; }) + (fetchNuGet { name = "System.Xml.XmlDocument"; version = "4.3.0"; sha256 = "0bmz1l06dihx52jxjr22dyv5mxv6pj4852lx68grjm7bivhrbfwi"; }) + (fetchNuGet { name = "System.Xml.XPath"; version = "4.3.0"; sha256 = "1cv2m0p70774a0sd1zxc8fm8jk3i5zk2bla3riqvi8gsm0r4kpci"; }) + (fetchNuGet { name = "System.Xml.XPath.XDocument"; version = "4.3.0"; sha256 = "1wxckyb7n1pi433xzz0qcwcbl1swpra64065mbwwi8dhdc4kiabn"; }) +] diff --git a/pkgs/development/tools/misc/saleae-logic-2/default.nix b/pkgs/development/tools/misc/saleae-logic-2/default.nix index 57a513a63d80..02927667775a 100644 --- a/pkgs/development/tools/misc/saleae-logic-2/default.nix +++ b/pkgs/development/tools/misc/saleae-logic-2/default.nix @@ -1,10 +1,10 @@ { lib, fetchurl, makeDesktopItem, appimageTools, gtk3 }: let name = "saleae-logic-2"; - version = "2.3.38"; + version = "2.3.39"; src = fetchurl { url = "https://downloads.saleae.com/logic2/Logic-${version}-master.AppImage"; - sha256 = "0y3ys3q6gd9fxgaf36q5av0kgvy7jv5anyjxb4cva8d95l4k3ask"; + sha256 = "1p31i8xillc5vrl2nli74b7p7cv2yz2qafp2gnyjfn0nbx5ij52g"; }; desktopItem = makeDesktopItem { inherit name; diff --git a/pkgs/development/tools/ocaml/merlin/4.x.nix b/pkgs/development/tools/ocaml/merlin/4.x.nix index eda2bb4960c6..5554ce163502 100644 --- a/pkgs/development/tools/ocaml/merlin/4.x.nix +++ b/pkgs/development/tools/ocaml/merlin/4.x.nix @@ -47,6 +47,9 @@ buildDunePackage { dot_merlin_reader = "${dot-merlin-reader}/bin/dot-merlin-reader"; dune = "${dune_2}/bin/dune"; }) + # This fixes the test-suite on macOS + # See https://github.com/ocaml/merlin/pull/1399 + ./test.patch ]; useDune2 = true; diff --git a/pkgs/development/tools/ocaml/merlin/test.patch b/pkgs/development/tools/ocaml/merlin/test.patch new file mode 100644 index 000000000000..0101e825b967 --- /dev/null +++ b/pkgs/development/tools/ocaml/merlin/test.patch @@ -0,0 +1,19 @@ +commit 282eed37f39ff216add8d53766fd59f3737eb87f +Author: Vincent Laporte <Vincent.Laporte@gmail.com> +Date: Thu Nov 4 06:24:07 2021 +0100 + + Ignore dune stderr in tests + +diff --git a/tests/test-dirs/document/src-documentation.t/run.t b/tests/test-dirs/document/src-documentation.t/run.t +index 2c9e1419..4f4c4327 100644 +--- a/tests/test-dirs/document/src-documentation.t/run.t ++++ b/tests/test-dirs/document/src-documentation.t/run.t +@@ -42,7 +42,7 @@ documentation for the non-last defined value (in the same file) is show + > jq '.value' + " List reversal. " + +- $ dune build --root=. ./doc.exe ++ $ dune build --root=. ./doc.exe 2> /dev/null + $ cat >.merlin <<EOF + > B _build/default/.doc.eobjs/byte + > S . diff --git a/pkgs/development/tools/ocaml/opam/default.nix b/pkgs/development/tools/ocaml/opam/default.nix index eb0d284c0821..05c555a6e141 100644 --- a/pkgs/development/tools/ocaml/opam/default.nix +++ b/pkgs/development/tools/ocaml/opam/default.nix @@ -19,12 +19,12 @@ let sha256 = "17ajdzrnmnyfig3s6hinb56mcmhywbssxhsq32dz0v90dhz3wmfv"; }; "cudf" = fetchurl { - url = "https://gforge.inria.fr/frs/download.php/36602/cudf-0.9.tar.gz"; + url = "https://github.com/ocaml/opam-source-archives/raw/main/cudf-0.9.tar.gz"; sha256 = "0771lwljqwwn3cryl0plny5a5dyyrj4z6bw66ha5n8yfbpcy8clr"; }; "dose3" = fetchurl { - url = "https://gforge.inria.fr/frs/download.php/file/36063/dose3-5.0.1.tar.gz"; - sha256 = "00yvyfm4j423zqndvgc1ycnmiffaa2l9ab40cyg23pf51qmzk2jm"; + url = "https://gitlab.com/irill/dose3/-/archive/5.0.1/dose3-5.0.1.tar.gz"; + sha256 = "1mh6fv8qbf8xx4h2dc0dpv2lzygvikzjhw1idrknibbwsjw3jg9c"; }; "dune-local" = fetchurl { url = "https://github.com/ocaml/dune/releases/download/2.9.0/dune-2.9.0.tbz"; @@ -67,13 +67,13 @@ let sha256 = "0jnqsv6pqp5b5g7lcjwgd75zqqvcwcl5a32zi03zg1kvj79p5gxs"; }; opam = fetchurl { - url = "https://github.com/ocaml/opam/archive/2.1.0.zip"; - sha256 = "063df5gsvp4yrbqbnd8k7a1f04cf12prc5wh4f1200acs3jwjxwb"; + url = "https://github.com/ocaml/opam/archive/2.1.1.zip"; + sha256 = "0sm9a7yh1iqcd51j5wdrc34w71iga619hvmgyy5fq1hwvgmfssrj"; }; }; in stdenv.mkDerivation { pname = "opam"; - version = "2.1.0"; + version = "2.1.1"; nativeBuildInputs = [ makeWrapper unzip ]; buildInputs = [ curl ncurses ocaml getconf ] ++ lib.optional stdenv.isLinux bubblewrap; @@ -133,4 +133,4 @@ in stdenv.mkDerivation { platforms = platforms.all; }; } -# Generated by: ./opam.nix.pl -v 2.1.0 -p opam-shebangs.patch +# Generated by: ./opam.nix.pl -v 2.1.1 -p opam-shebangs.patch diff --git a/pkgs/development/tools/omnisharp-roslyn/create-deps.sh b/pkgs/development/tools/omnisharp-roslyn/create-deps.sh index 25ced7b95fd3..4e4291a55602 100755 --- a/pkgs/development/tools/omnisharp-roslyn/create-deps.sh +++ b/pkgs/development/tools/omnisharp-roslyn/create-deps.sh @@ -1,5 +1,5 @@ #!/usr/bin/env nix-shell -#!nix-shell -i bash -p msbuild -p jq -p xmlstarlet -p curl +#!nix-shell -I nixpkgs=../../../../.. -i bash -p msbuild dotnet-sdk_3 jq xmlstarlet curl set -euo pipefail cat << EOL @@ -20,7 +20,6 @@ mapfile -t repos < <( msbuild -t:restore -p:Configuration=Release -p:RestorePackagesPath="$tmpdir" \ -p:RestoreNoCache=true -p:RestoreForce=true \ - -p:NuGetPackageVersion=5.9.1-rc.8 \ src/OmniSharp.Stdio.Driver/OmniSharp.Stdio.Driver.csproj >&2 cd "$tmpdir" diff --git a/pkgs/development/tools/omnisharp-roslyn/default.nix b/pkgs/development/tools/omnisharp-roslyn/default.nix index 25f7ce4e7aa6..e2d3b236cdc5 100644 --- a/pkgs/development/tools/omnisharp-roslyn/default.nix +++ b/pkgs/development/tools/omnisharp-roslyn/default.nix @@ -68,26 +68,23 @@ let in stdenv.mkDerivation rec { pname = "omnisharp-roslyn"; - version = "1.37.12"; + version = "1.37.15"; src = fetchFromGitHub { owner = "OmniSharp"; repo = pname; rev = "v${version}"; - sha256 = "0gyy49v3pslr0l0q6h8hzah4s0iwkhkyckyrj3g2cg08w20b10gw"; + sha256 = "070wqs667si3f78fy6w4rrfm8qncnabg0yckjhll0yv1pzbj9q42"; }; nativeBuildInputs = [ makeWrapper msbuild ]; - # NuGetPackageVersion is overridden to be to be compatible with msbuild 16.10, - # it needs to be kept in sync with ./create-deps.sh buildPhase = '' runHook preBuild HOME=$(pwd)/fake-home msbuild -r \ -p:Configuration=Release \ -p:RestoreConfigFile=${nuget-config} \ - -p:NuGetPackageVersion=5.9.1-rc.8 \ src/OmniSharp.Stdio.Driver/OmniSharp.Stdio.Driver.csproj runHook postBuild diff --git a/pkgs/development/tools/omnisharp-roslyn/deps.nix b/pkgs/development/tools/omnisharp-roslyn/deps.nix index e90424dd781b..305246ce984d 100644 --- a/pkgs/development/tools/omnisharp-roslyn/deps.nix +++ b/pkgs/development/tools/omnisharp-roslyn/deps.nix @@ -49,10 +49,10 @@ } { name = "mcmaster.extensions.commandlineutils"; - version = "2.2.4"; + version = "3.1.0"; src = fetchurl { - url = "https://api.nuget.org/v3-flatcontainer/mcmaster.extensions.commandlineutils/2.2.4/mcmaster.extensions.commandlineutils.2.2.4.nupkg"; - sha256 = "0hy45iacm9zlrj6p2j2i2gkbs4k52mncnlnjvwgh6b6523p9msfy"; + url = "https://api.nuget.org/v3-flatcontainer/mcmaster.extensions.commandlineutils/3.1.0/mcmaster.extensions.commandlineutils.3.1.0.nupkg"; + sha256 = "075n1mfsxwz514r94l8i3ax0wp43c3xb4f9w25a96h6xxnj0k2hd"; }; } { @@ -87,6 +87,14 @@ sha256 = "196swfxaz7l26hiyfv1mix0y80amhlq48krc4g5p9894wx1az3c3"; }; } + { + name = "microsoft.aspnetcore.app.ref"; + version = "3.1.10"; + src = fetchurl { + url = "https://api.nuget.org/v3-flatcontainer/microsoft.aspnetcore.app.ref/3.1.10/microsoft.aspnetcore.app.ref.3.1.10.nupkg"; + sha256 = "0xn4zh7shvijqlr03fqsmps6gz856isd9bg9rk4z2c4599ggal77"; + }; + } { name = "microsoft.bcl.asyncinterfaces"; version = "1.1.0"; @@ -177,82 +185,82 @@ } { name = "microsoft.codeanalysis.common"; - version = "4.0.0-2.21322.50"; + version = "4.0.0-4.21427.11"; src = fetchurl { - url = "https://pkgs.dev.azure.com/dnceng/9ee6d478-d288-47f7-aacc-f6e6d082ae6d/_packaging/d1622942-d16f-48e5-bc83-96f4539e7601/nuget/v3/flat2/microsoft.codeanalysis.common/4.0.0-2.21322.50/microsoft.codeanalysis.common.4.0.0-2.21322.50.nupkg"; - sha256 = "1j9yl7m0lr03fjklzjyiac1lrgs8541frqmi4xlldn8a2sx3h97x"; + url = "https://pkgs.dev.azure.com/dnceng/9ee6d478-d288-47f7-aacc-f6e6d082ae6d/_packaging/d1622942-d16f-48e5-bc83-96f4539e7601/nuget/v3/flat2/microsoft.codeanalysis.common/4.0.0-4.21427.11/microsoft.codeanalysis.common.4.0.0-4.21427.11.nupkg"; + sha256 = "15q6a2z3ms2vyrfk4y7biniygy0brr3ddb8mn700zg4sl84vphcz"; }; } { name = "microsoft.codeanalysis.csharp"; - version = "4.0.0-2.21322.50"; + version = "4.0.0-4.21427.11"; src = fetchurl { - url = "https://pkgs.dev.azure.com/dnceng/9ee6d478-d288-47f7-aacc-f6e6d082ae6d/_packaging/d1622942-d16f-48e5-bc83-96f4539e7601/nuget/v3/flat2/microsoft.codeanalysis.csharp/4.0.0-2.21322.50/microsoft.codeanalysis.csharp.4.0.0-2.21322.50.nupkg"; - sha256 = "1mmcl4rj3n1q7zh1n9b9ph3lvm8i51sdm87q3sgiczv2pxrihzs6"; + url = "https://pkgs.dev.azure.com/dnceng/9ee6d478-d288-47f7-aacc-f6e6d082ae6d/_packaging/d1622942-d16f-48e5-bc83-96f4539e7601/nuget/v3/flat2/microsoft.codeanalysis.csharp/4.0.0-4.21427.11/microsoft.codeanalysis.csharp.4.0.0-4.21427.11.nupkg"; + sha256 = "0x3l774higkpbbk4f1naf57c039g8qvvdvb3963m7g54qn4zhvdh"; }; } { name = "microsoft.codeanalysis.csharp.features"; - version = "4.0.0-2.21322.50"; + version = "4.0.0-4.21427.11"; src = fetchurl { - url = "https://pkgs.dev.azure.com/dnceng/9ee6d478-d288-47f7-aacc-f6e6d082ae6d/_packaging/d1622942-d16f-48e5-bc83-96f4539e7601/nuget/v3/flat2/microsoft.codeanalysis.csharp.features/4.0.0-2.21322.50/microsoft.codeanalysis.csharp.features.4.0.0-2.21322.50.nupkg"; - sha256 = "11pzbswlznz71m248c1p4fi4i3zzvpc4a71px9j2lhnm57zy2lvy"; + url = "https://pkgs.dev.azure.com/dnceng/9ee6d478-d288-47f7-aacc-f6e6d082ae6d/_packaging/d1622942-d16f-48e5-bc83-96f4539e7601/nuget/v3/flat2/microsoft.codeanalysis.csharp.features/4.0.0-4.21427.11/microsoft.codeanalysis.csharp.features.4.0.0-4.21427.11.nupkg"; + sha256 = "0w0wrssv0ix4z9609a34k6a5kc4p85gy76p676fdg6hyf6pzd78m"; }; } { name = "microsoft.codeanalysis.csharp.scripting"; - version = "4.0.0-2.21322.50"; + version = "4.0.0-4.21427.11"; src = fetchurl { - url = "https://pkgs.dev.azure.com/dnceng/9ee6d478-d288-47f7-aacc-f6e6d082ae6d/_packaging/d1622942-d16f-48e5-bc83-96f4539e7601/nuget/v3/flat2/microsoft.codeanalysis.csharp.scripting/4.0.0-2.21322.50/microsoft.codeanalysis.csharp.scripting.4.0.0-2.21322.50.nupkg"; - sha256 = "0piiyg1l27cy6s4ii80phrdsyhl8zvwbj9aljqkg53gki520x19p"; + url = "https://pkgs.dev.azure.com/dnceng/9ee6d478-d288-47f7-aacc-f6e6d082ae6d/_packaging/d1622942-d16f-48e5-bc83-96f4539e7601/nuget/v3/flat2/microsoft.codeanalysis.csharp.scripting/4.0.0-4.21427.11/microsoft.codeanalysis.csharp.scripting.4.0.0-4.21427.11.nupkg"; + sha256 = "0lmfbkxqp8p52wg2lsyxpavabk318s6ci02cxzgmxydc2pd9r70v"; }; } { name = "microsoft.codeanalysis.csharp.workspaces"; - version = "4.0.0-2.21322.50"; + version = "4.0.0-4.21427.11"; src = fetchurl { - url = "https://pkgs.dev.azure.com/dnceng/9ee6d478-d288-47f7-aacc-f6e6d082ae6d/_packaging/d1622942-d16f-48e5-bc83-96f4539e7601/nuget/v3/flat2/microsoft.codeanalysis.csharp.workspaces/4.0.0-2.21322.50/microsoft.codeanalysis.csharp.workspaces.4.0.0-2.21322.50.nupkg"; - sha256 = "0q6jkgjh1dylmjx8a79ighgbai1jr2fhls9m7khi87anzc3wdcl2"; + url = "https://pkgs.dev.azure.com/dnceng/9ee6d478-d288-47f7-aacc-f6e6d082ae6d/_packaging/d1622942-d16f-48e5-bc83-96f4539e7601/nuget/v3/flat2/microsoft.codeanalysis.csharp.workspaces/4.0.0-4.21427.11/microsoft.codeanalysis.csharp.workspaces.4.0.0-4.21427.11.nupkg"; + sha256 = "0j5c9v4nfahvnasz895czk1cp46b2d98px1gdar2ik9c5630vxwi"; }; } { name = "microsoft.codeanalysis.externalaccess.omnisharp"; - version = "4.0.0-2.21322.50"; + version = "4.0.0-4.21427.11"; src = fetchurl { - url = "https://pkgs.dev.azure.com/dnceng/9ee6d478-d288-47f7-aacc-f6e6d082ae6d/_packaging/d1622942-d16f-48e5-bc83-96f4539e7601/nuget/v3/flat2/microsoft.codeanalysis.externalaccess.omnisharp/4.0.0-2.21322.50/microsoft.codeanalysis.externalaccess.omnisharp.4.0.0-2.21322.50.nupkg"; - sha256 = "1rv5qsj8lsfqxdzd6zazrzwzaxwmj6szd9hv2ckbb4lypkn8ifs8"; + url = "https://pkgs.dev.azure.com/dnceng/9ee6d478-d288-47f7-aacc-f6e6d082ae6d/_packaging/d1622942-d16f-48e5-bc83-96f4539e7601/nuget/v3/flat2/microsoft.codeanalysis.externalaccess.omnisharp/4.0.0-4.21427.11/microsoft.codeanalysis.externalaccess.omnisharp.4.0.0-4.21427.11.nupkg"; + sha256 = "0qy8xiv1j8awmbbgy16b2y9rhymxhx8kcmfylhxi1ryqql4mrpg2"; }; } { name = "microsoft.codeanalysis.externalaccess.omnisharp.csharp"; - 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sha256 = "1grkql2wcqsqlmqnfchw6wxynwpz4x9wgqd00zpc1g04z9lqimq6"; + url = "https://pkgs.dev.azure.com/dnceng/9ee6d478-d288-47f7-aacc-f6e6d082ae6d/_packaging/d1622942-d16f-48e5-bc83-96f4539e7601/nuget/v3/flat2/microsoft.codeanalysis.features/4.0.0-4.21427.11/microsoft.codeanalysis.features.4.0.0-4.21427.11.nupkg"; + sha256 = "03vclmmxch3jrjamr9lg899s9wsfxw9yf53p9yfwvcr8wml4cwpz"; }; } { name = "microsoft.codeanalysis.scripting.common"; - version = "4.0.0-2.21322.50"; + version = "4.0.0-4.21427.11"; src = fetchurl { - url = "https://pkgs.dev.azure.com/dnceng/9ee6d478-d288-47f7-aacc-f6e6d082ae6d/_packaging/d1622942-d16f-48e5-bc83-96f4539e7601/nuget/v3/flat2/microsoft.codeanalysis.scripting.common/4.0.0-2.21322.50/microsoft.codeanalysis.scripting.common.4.0.0-2.21322.50.nupkg"; - sha256 = "1c14bg99ywxdvlp5zc08ijc030rxmpb3171kz2z6f5kr02vf296x"; + url = "https://pkgs.dev.azure.com/dnceng/9ee6d478-d288-47f7-aacc-f6e6d082ae6d/_packaging/d1622942-d16f-48e5-bc83-96f4539e7601/nuget/v3/flat2/microsoft.codeanalysis.scripting.common/4.0.0-4.21427.11/microsoft.codeanalysis.scripting.common.4.0.0-4.21427.11.nupkg"; + sha256 = "15fkbw651v9lliqdmg1k61dqzasrssahyhrhwg24m111rgh86fbn"; }; } { name = "microsoft.codeanalysis.workspaces.common"; - version = "4.0.0-2.21322.50"; + version = "4.0.0-4.21427.11"; src = fetchurl { - url = "https://pkgs.dev.azure.com/dnceng/9ee6d478-d288-47f7-aacc-f6e6d082ae6d/_packaging/d1622942-d16f-48e5-bc83-96f4539e7601/nuget/v3/flat2/microsoft.codeanalysis.workspaces.common/4.0.0-2.21322.50/microsoft.codeanalysis.workspaces.common.4.0.0-2.21322.50.nupkg"; - sha256 = "1c0m5pg156x8zh50x7rp25p8cn09gbv50wpbz2p1nc5ff5dyavf5"; + url = "https://pkgs.dev.azure.com/dnceng/9ee6d478-d288-47f7-aacc-f6e6d082ae6d/_packaging/d1622942-d16f-48e5-bc83-96f4539e7601/nuget/v3/flat2/microsoft.codeanalysis.workspaces.common/4.0.0-4.21427.11/microsoft.codeanalysis.workspaces.common.4.0.0-4.21427.11.nupkg"; + sha256 = "0k4qjkkg4mllizialzm463ssm3faqcqjnw19kbcnrzm5cd72i7cy"; }; } { @@ -544,35 +552,11 @@ }; } { - name = "microsoft.netcore.app"; - version = "2.1.0"; + name = "microsoft.netcore.app.ref"; + version = "3.1.0"; src = fetchurl { - url = "https://api.nuget.org/v3-flatcontainer/microsoft.netcore.app/2.1.0/microsoft.netcore.app.2.1.0.nupkg"; - sha256 = "1qgw6njwz30l5cwkvgf2fbsjqkc9vy0w3939c24iabmvjnzjr6a4"; - }; - } - { - name = "microsoft.netcore.dotnetapphost"; - version = "2.1.0"; - src = fetchurl { - url = "https://api.nuget.org/v3-flatcontainer/microsoft.netcore.dotnetapphost/2.1.0/microsoft.netcore.dotnetapphost.2.1.0.nupkg"; - sha256 = "10hnhkix2av0c7djp2q88pw407m8gk3im4r06x762a3cs6f2jprd"; - }; - } - { - name = "microsoft.netcore.dotnethostpolicy"; - version = "2.1.0"; - src = fetchurl { - url = "https://api.nuget.org/v3-flatcontainer/microsoft.netcore.dotnethostpolicy/2.1.0/microsoft.netcore.dotnethostpolicy.2.1.0.nupkg"; - sha256 = "1xh8ij7zyfkrk20rgpwqs00mxdy2qiwr7qar2xk397zk2bh2d90n"; - }; - } - { - name = "microsoft.netcore.dotnethostresolver"; - version = "2.1.0"; - src = fetchurl { - url = "https://api.nuget.org/v3-flatcontainer/microsoft.netcore.dotnethostresolver/2.1.0/microsoft.netcore.dotnethostresolver.2.1.0.nupkg"; - sha256 = "1384k3cg4sjcn3hyalcm43fhmlfj5pnywpzd9zpgc4jsr2c16x76"; + url = "https://api.nuget.org/v3-flatcontainer/microsoft.netcore.app.ref/3.1.0/microsoft.netcore.app.ref.3.1.0.nupkg"; + sha256 = "08svsiilx9spvjamcnjswv0dlpdrgryhr3asdz7cvnl914gjzq4y"; }; } { @@ -599,14 +583,6 @@ sha256 = "1fk2fk2639i7nzy58m9dvpdnzql4vb8yl8vr19r2fp8lmj9w2jr0"; }; } - { - name = "microsoft.netcore.platforms"; - version = "2.1.0"; - src = fetchurl { - url = "https://api.nuget.org/v3-flatcontainer/microsoft.netcore.platforms/2.1.0/microsoft.netcore.platforms.2.1.0.nupkg"; - sha256 = "0nmdnkmwyxj8cp746hs9an57zspqlmqdm55b00i7yk8a22s6akxz"; - }; - } { name = "microsoft.netcore.platforms"; version = "2.1.2"; @@ -639,14 +615,6 @@ sha256 = "193xwf33fbm0ni3idxzbr5fdq3i2dlfgihsac9jj7whj0gd902nh"; }; } - { - name = "microsoft.netcore.targets"; - version = "2.1.0"; - src = fetchurl { - url = "https://api.nuget.org/v3-flatcontainer/microsoft.netcore.targets/2.1.0/microsoft.netcore.targets.2.1.0.nupkg"; - sha256 = "1dav8x5551nwdqfigxf9zfsml5l9lakg86x38s9dvps81xs5d9zq"; - }; - } { name = "microsoft.netframework.referenceassemblies"; version = "1.0.0"; @@ -705,10 +673,10 @@ } { name = "microsoft.visualstudio.debugger.contracts"; - version = "17.2.0-beta.21262.1"; + version = "17.2.0-beta.21417.1"; src = fetchurl { - url = "https://api.nuget.org/v3-flatcontainer/microsoft.visualstudio.debugger.contracts/17.2.0-beta.21262.1/microsoft.visualstudio.debugger.contracts.17.2.0-beta.21262.1.nupkg"; - sha256 = "148gb4k28fch1rhh6kr82dajl7qnvjxvkxvc8igy7zra70nvbx74"; + url = "https://pkgs.dev.azure.com/azure-public/3ccf6661-f8ce-4e8a-bb2e-eff943ddd3c7/_packaging/78665e4c-b767-412b-9804-2b1ef7a48b8a/nuget/v3/flat2/microsoft.visualstudio.debugger.contracts/17.2.0-beta.21417.1/microsoft.visualstudio.debugger.contracts.17.2.0-beta.21417.1.nupkg"; + sha256 = "14v8d0hp6p1jn4i6b12r6vx4cvxycpb37a0zh0amz0qkg4afr12d"; }; } { @@ -783,6 +751,14 @@ sha256 = "0i4y782yrqqyx85pg597m20gm0v126w0j9ddk5z7xb3crx4z9f2s"; }; } + { + name = "microsoft.win32.systemevents"; + version = "4.7.0"; + src = fetchurl { + url = "https://api.nuget.org/v3-flatcontainer/microsoft.win32.systemevents/4.7.0/microsoft.win32.systemevents.4.7.0.nupkg"; + sha256 = "0pjll2a62hc576hd4wgyasva0lp733yllmk54n37svz5ac7nfz0q"; + }; + } { name = "nerdbank.streams"; version = "2.6.81"; @@ -831,6 +807,14 @@ sha256 = "0mcy0i7pnfpqm4pcaiyzzji4g0c8i3a5gjz28rrr28110np8304r"; }; } + { + name = "nuget.common"; + version = "5.10.0"; + src = fetchurl { + url = "https://api.nuget.org/v3-flatcontainer/nuget.common/5.10.0/nuget.common.5.10.0.nupkg"; + sha256 = "0qy6blgppgvxpfcricmvva3qzddk18dza5vy851jrbqshvf9g7kx"; + }; + } { name = "nuget.common"; version = "5.2.0"; @@ -840,11 +824,11 @@ }; } { - name = "nuget.common"; - version = "5.9.1-rc.8"; + name = "nuget.configuration"; + version = "5.10.0"; src = fetchurl { - url = "https://pkgs.dev.azure.com/dnceng/9ee6d478-d288-47f7-aacc-f6e6d082ae6d/_packaging/d1622942-d16f-48e5-bc83-96f4539e7601/nuget/v3/flat2/nuget.common/5.9.1-rc.8/nuget.common.5.9.1-rc.8.nupkg"; - sha256 = "056b1h4fvik6z2qc2s6qzz0s4acbipc50af14fbr7hd9h2fxya4c"; + url = "https://api.nuget.org/v3-flatcontainer/nuget.configuration/5.10.0/nuget.configuration.5.10.0.nupkg"; + sha256 = "0xb1n94lrwa6k83i9xcsq68202086p2gj74gzlbhlvb8c2pw6lbb"; }; } { @@ -856,11 +840,11 @@ }; } { - name = "nuget.configuration"; - version = "5.9.1-rc.8"; + name = "nuget.dependencyresolver.core"; + version = "5.10.0"; src = fetchurl { - url = "https://pkgs.dev.azure.com/dnceng/9ee6d478-d288-47f7-aacc-f6e6d082ae6d/_packaging/d1622942-d16f-48e5-bc83-96f4539e7601/nuget/v3/flat2/nuget.configuration/5.9.1-rc.8/nuget.configuration.5.9.1-rc.8.nupkg"; - sha256 = "0x8vigf0sfp6kf1i98xcr4k84vci596x16hmajdm0zgv3p1w2kvk"; + url = "https://api.nuget.org/v3-flatcontainer/nuget.dependencyresolver.core/5.10.0/nuget.dependencyresolver.core.5.10.0.nupkg"; + sha256 = "0dhhclm281ihpfsjzxw34l6zlw49nwzyjiynkmsbcj9icfkp3y4r"; }; } { @@ -871,14 +855,6 @@ sha256 = "156yjfsk9pzqviiwy69lxfqf61yyj4hn4vdgfcbqvw4d567i150r"; }; } - { - name = "nuget.dependencyresolver.core"; - version = "5.9.1-rc.8"; - src = fetchurl { - url = "https://pkgs.dev.azure.com/dnceng/9ee6d478-d288-47f7-aacc-f6e6d082ae6d/_packaging/d1622942-d16f-48e5-bc83-96f4539e7601/nuget/v3/flat2/nuget.dependencyresolver.core/5.9.1-rc.8/nuget.dependencyresolver.core.5.9.1-rc.8.nupkg"; - sha256 = "1q9a97s1z3a6fb4p82ag2lqnzl53895prbqwlbvckdw9c3rpz3gc"; - }; - } { name = "nuget.frameworks"; version = "5.0.0"; @@ -887,6 +863,14 @@ sha256 = "18ijvmj13cwjdrrm52c8fpq021531zaz4mj4b4zapxaqzzxf2qjr"; }; } + { + name = "nuget.frameworks"; + version = "5.10.0"; + src = fetchurl { + url = "https://api.nuget.org/v3-flatcontainer/nuget.frameworks/5.10.0/nuget.frameworks.5.10.0.nupkg"; + sha256 = "0gb6n8rg2jpjp52icgpb3wjdfs3qllh5vbcz8hbcix3l7dncy3v2"; + }; + } { name = "nuget.frameworks"; version = "5.2.0"; @@ -896,11 +880,11 @@ }; } { - name = "nuget.frameworks"; - version = "5.9.1-rc.8"; + name = "nuget.librarymodel"; + version = "5.10.0"; src = fetchurl { - url = "https://pkgs.dev.azure.com/dnceng/9ee6d478-d288-47f7-aacc-f6e6d082ae6d/_packaging/d1622942-d16f-48e5-bc83-96f4539e7601/nuget/v3/flat2/nuget.frameworks/5.9.1-rc.8/nuget.frameworks.5.9.1-rc.8.nupkg"; - sha256 = "1n3mp9ns79yq4dwgj7h2av3b485mzgsw0qlj8z7p47krwlzp5hiv"; + url = "https://api.nuget.org/v3-flatcontainer/nuget.librarymodel/5.10.0/nuget.librarymodel.5.10.0.nupkg"; + sha256 = "0b6mmq2mqfr06ypc772dmcd8bz55gkyfrgn0j3nrgkcdww4fzf9q"; }; } { @@ -912,11 +896,11 @@ }; } { - name = "nuget.librarymodel"; - version = "5.9.1-rc.8"; + name = "nuget.packaging"; + version = "5.10.0"; src = fetchurl { - url = "https://pkgs.dev.azure.com/dnceng/9ee6d478-d288-47f7-aacc-f6e6d082ae6d/_packaging/d1622942-d16f-48e5-bc83-96f4539e7601/nuget/v3/flat2/nuget.librarymodel/5.9.1-rc.8/nuget.librarymodel.5.9.1-rc.8.nupkg"; - sha256 = "0sy8422c94wcg8ka85lnawq26mpixl79avk9m6y44lshrpga5v4v"; + url = "https://api.nuget.org/v3-flatcontainer/nuget.packaging/5.10.0/nuget.packaging.5.10.0.nupkg"; + sha256 = "11g0v061axhp0nisclq5cm2mc92d69z92giz9l40ih478c5nishw"; }; } { @@ -928,19 +912,19 @@ }; } { - name = "nuget.packaging"; - version = "5.9.1-rc.8"; + name = "nuget.packaging.core"; + version = "5.10.0"; src = fetchurl { - url = "https://pkgs.dev.azure.com/dnceng/9ee6d478-d288-47f7-aacc-f6e6d082ae6d/_packaging/d1622942-d16f-48e5-bc83-96f4539e7601/nuget/v3/flat2/nuget.packaging/5.9.1-rc.8/nuget.packaging.5.9.1-rc.8.nupkg"; - sha256 = "0x9c3v741nn6m2xgidna88fa4xj5avhv6asj73hqv4pzpdprlrhv"; + url = "https://api.nuget.org/v3-flatcontainer/nuget.packaging.core/5.10.0/nuget.packaging.core.5.10.0.nupkg"; + sha256 = "1frxwwl583qwsj84rjgvd7il6icgxzxxps6yng75qx8ppf99dsr6"; }; } { - name = "nuget.packaging.core"; - version = "5.9.1-rc.8"; + name = "nuget.projectmodel"; + version = "5.10.0"; src = fetchurl { - url = "https://pkgs.dev.azure.com/dnceng/9ee6d478-d288-47f7-aacc-f6e6d082ae6d/_packaging/d1622942-d16f-48e5-bc83-96f4539e7601/nuget/v3/flat2/nuget.packaging.core/5.9.1-rc.8/nuget.packaging.core.5.9.1-rc.8.nupkg"; - sha256 = "0vsaixmla4zh277xpn5ngbmi2f52hb26aqzr0z9l4a3mlpi4l5nx"; + url = "https://api.nuget.org/v3-flatcontainer/nuget.projectmodel/5.10.0/nuget.projectmodel.5.10.0.nupkg"; + sha256 = "1cqg319n986wciskrqsfawfhqp1d7a7i2qjd0qplpckyw8msng2i"; }; } { @@ -952,11 +936,11 @@ }; } { - name = "nuget.projectmodel"; - version = "5.9.1-rc.8"; + name = "nuget.protocol"; + version = "5.10.0"; src = fetchurl { - url = "https://pkgs.dev.azure.com/dnceng/9ee6d478-d288-47f7-aacc-f6e6d082ae6d/_packaging/d1622942-d16f-48e5-bc83-96f4539e7601/nuget/v3/flat2/nuget.projectmodel/5.9.1-rc.8/nuget.projectmodel.5.9.1-rc.8.nupkg"; - sha256 = "1xjh7isw467nkc7dkfj3wlw69vi2cns66z152jrzjdmxmia3i3pv"; + url = "https://api.nuget.org/v3-flatcontainer/nuget.protocol/5.10.0/nuget.protocol.5.10.0.nupkg"; + sha256 = "0cs9qp169zx6g2w5bzrlhxv0q1i8mb8dxlb2nkiq7pkvah86rxkc"; }; } { @@ -968,11 +952,11 @@ }; } { - name = "nuget.protocol"; - version = "5.9.1-rc.8"; + name = "nuget.versioning"; + version = "5.10.0"; src = fetchurl { - url = "https://pkgs.dev.azure.com/dnceng/9ee6d478-d288-47f7-aacc-f6e6d082ae6d/_packaging/d1622942-d16f-48e5-bc83-96f4539e7601/nuget/v3/flat2/nuget.protocol/5.9.1-rc.8/nuget.protocol.5.9.1-rc.8.nupkg"; - sha256 = "1rnrxzaciqhhgwd4by0dhkvfrm1h161vvmkvlcwaz2589sqq2dzq"; + url = "https://api.nuget.org/v3-flatcontainer/nuget.versioning/5.10.0/nuget.versioning.5.10.0.nupkg"; + sha256 = "10vvw6vjpx0c26rlxh7dnpyp4prahn25717ccd8bzkjmyzhm90cs"; }; } { @@ -983,14 +967,6 @@ sha256 = "08ay8bhddj9yiq6h9lk814l65fpx5gh1iprkl7pcp78g57a6k45k"; }; } - { - name = "nuget.versioning"; - version = "5.9.1-rc.8"; - src = fetchurl { - url = "https://pkgs.dev.azure.com/dnceng/9ee6d478-d288-47f7-aacc-f6e6d082ae6d/_packaging/d1622942-d16f-48e5-bc83-96f4539e7601/nuget/v3/flat2/nuget.versioning/5.9.1-rc.8/nuget.versioning.5.9.1-rc.8.nupkg"; - sha256 = "1vv7z122ilsk2rsvjm6j3hpifb45g8wa1mgnq1kwi9k8b2dbb6vv"; - }; - } { name = "omnisharp.extensions.jsonrpc"; version = "0.19.0"; @@ -1407,6 +1383,22 @@ sha256 = "1m3bx6c2s958qligl67q7grkwfz3w53hpy7nc97mh6f7j5k168c4"; }; } + { + name = "system.drawing.common"; + version = "4.7.0"; + src = fetchurl { + url = "https://api.nuget.org/v3-flatcontainer/system.drawing.common/4.7.0/system.drawing.common.4.7.0.nupkg"; + sha256 = "0yfw7cpl54mgfcylvlpvrl0c8r1b0zca6p7r3rcwkvqy23xqcyhg"; + }; + } + { + name = "system.formats.asn1"; + version = "5.0.0"; + src = fetchurl { + url = "https://api.nuget.org/v3-flatcontainer/system.formats.asn1/5.0.0/system.formats.asn1.5.0.0.nupkg"; + sha256 = "1axc8z0839yvqi2cb63l73l6d9j6wd20lsbdymwddz9hvrsgfwpn"; + }; + } { name = "system.globalization"; version = "4.0.11"; @@ -2231,14 +2223,6 @@ sha256 = "1nx773nsx6z5whv8kaa1wjh037id2f1cxhb69pvgv12hd2b6qs56"; }; } - { - name = "system.valuetuple"; - version = "4.4.0"; - src = fetchurl { - url = "https://api.nuget.org/v3-flatcontainer/system.valuetuple/4.4.0/system.valuetuple.4.4.0.nupkg"; - sha256 = "1wydfgszs00yxga57sam66vzv9fshk2pw7gim57saplsnkfliaif"; - }; - } { name = "system.valuetuple"; version = "4.5.0"; @@ -2247,6 +2231,14 @@ sha256 = "00k8ja51d0f9wrq4vv5z2jhq8hy31kac2rg0rv06prylcybzl8cy"; }; } + { + name = "system.windows.extensions"; + version = "4.7.0"; + src = fetchurl { + url = "https://api.nuget.org/v3-flatcontainer/system.windows.extensions/4.7.0/system.windows.extensions.4.7.0.nupkg"; + sha256 = "11dmyx3j0jafjx5r9mkj1v4w2a4rzrdn8fgwm2d1g7fs1ayqcvy9"; + }; + } { name = "system.xml.readerwriter"; version = "4.3.0"; diff --git a/pkgs/development/tools/open-policy-agent/default.nix b/pkgs/development/tools/open-policy-agent/default.nix index 044a44c42fad..824b9dc44d6e 100644 --- a/pkgs/development/tools/open-policy-agent/default.nix +++ b/pkgs/development/tools/open-policy-agent/default.nix @@ -8,13 +8,13 @@ buildGoModule rec { pname = "open-policy-agent"; - version = "0.33.1"; + version = "0.34.0"; src = fetchFromGitHub { owner = "open-policy-agent"; repo = "opa"; rev = "v${version}"; - sha256 = "sha256-n0VuzYlgn9IGiaxzDeuVjMqFbDwTe3UjExk7BT2DNZc="; + sha256 = "sha256-T8eFCFzDU0GTd7n141XKT34lRXoU2LOrl0Rlh1WLsmo="; }; vendorSha256 = null; diff --git a/pkgs/development/tools/packer/default.nix b/pkgs/development/tools/packer/default.nix index eafa2b7b85dc..aea34c5d57c1 100644 --- a/pkgs/development/tools/packer/default.nix +++ b/pkgs/development/tools/packer/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "packer"; - version = "1.7.6"; + version = "1.7.8"; src = fetchFromGitHub { owner = "hashicorp"; repo = "packer"; rev = "v${version}"; - sha256 = "sha256-nZeOtV6sbgzUhDOlWJ5eLzOh0gsaukXFrPg3y8x9ce4="; + sha256 = "sha256-VLHibkyuB8H2zfUCAuk7lBKbW5bl2kJOkwpo/iqsdm8="; }; - vendorSha256 = "sha256-zg4mVFvP/SciCLDF9FopqzeiE5dfpxfZJ6BYjcj2BZ0="; + vendorSha256 = "sha256-NB3oD4IB2xC9+d2eghPa1hnJM7Eop88zvRFlHdQDn38="; subPackages = [ "." ]; diff --git a/pkgs/development/tools/pactorio/default.nix b/pkgs/development/tools/pactorio/default.nix index 63c3c10ca36d..e9ff420eea29 100644 --- a/pkgs/development/tools/pactorio/default.nix +++ b/pkgs/development/tools/pactorio/default.nix @@ -1,28 +1,36 @@ -{ fetchFromGitHub, installShellFiles, lib, stdenv, rustPlatform, Security }: +{ lib +, rustPlatform +, fetchFromGitHub +, installShellFiles +, pkg-config +, bzip2 +, stdenv +, Security +}: rustPlatform.buildRustPackage rec { pname = "pactorio"; - version = "0.5.1"; + version = "0.5.2"; src = fetchFromGitHub { owner = "figsoda"; repo = pname; rev = "v${version}"; - sha256 = "07h9hywz0pc29411myhxjq6pks4p6q6czbqjv7fxf3xkb1mg9grq"; + sha256 = "sha256-tRmchXDg8flvByjg6GLwwdwQgp/5NdZIgnjYgPLcLP8="; }; - cargoSha256 = "1rac2s36j88vm231aji8d0ndfbaa2gzxwsrxrvsi0zp9cqisc6rh"; + cargoSha256 = "sha256-FIn+6wflDAjshP2Vz/rXRTrrjPQFW63XtXo8hBHMdkg="; - nativeBuildInputs = [ installShellFiles ]; - buildInputs = lib.optional stdenv.isDarwin Security; + nativeBuildInputs = [ installShellFiles pkg-config ]; - preFixup = '' + buildInputs = [ bzip2 ] ++ lib.optional stdenv.isDarwin Security; + + postInstall = '' completions=($releaseDir/build/pactorio-*/out/completions) - installShellCompletion ''${completions[0]}/pactorio.{bash,fish} - installShellCompletion --zsh ''${completions[0]}/_pactorio + installShellCompletion $completions/pactorio.{bash,fish} --zsh $completions/_pactorio ''; - GEN_COMPLETIONS = "1"; + GEN_COMPLETIONS = 1; meta = with lib; { description = "Mod packager for factorio"; diff --git a/pkgs/development/tools/pandoc/default.nix b/pkgs/development/tools/pandoc/default.nix index 7c286218d8e2..475fa6a93e4e 100644 --- a/pkgs/development/tools/pandoc/default.nix +++ b/pkgs/development/tools/pandoc/default.nix @@ -1,10 +1,10 @@ { haskellPackages, fetchpatch, haskell, removeReferencesTo }: let - static = haskell.lib.justStaticExecutables haskellPackages.pandoc; + static = haskell.lib.compose.justStaticExecutables haskellPackages.pandoc; in - (haskell.lib.overrideCabal static (drv: { + (haskell.lib.compose.overrideCabal (drv: { configureFlags = drv.configureFlags or [] ++ ["-fembed_data_files"]; buildDepends = drv.buildDepends or [] ++ [haskellPackages.file-embed]; buildTools = (drv.buildTools or []) ++ [ removeReferencesTo ]; @@ -16,7 +16,7 @@ in sha256 = "gOtrWVylzwgu0YLD4SztqlXxtaXXGOf8nTqLwUBS7qs="; }) ]; - })).overrideAttrs (drv: { + }) static).overrideAttrs (drv: { # These libraries are still referenced, because they generate # a `Paths_*` module for figuring out their version. diff --git a/pkgs/development/tools/parsing/flex/2.6.1.nix b/pkgs/development/tools/parsing/flex/2.6.1.nix deleted file mode 100644 index aeb141649772..000000000000 --- a/pkgs/development/tools/parsing/flex/2.6.1.nix +++ /dev/null @@ -1,36 +0,0 @@ -{ lib, stdenv, fetchurl, bison, m4 }: - -stdenv.mkDerivation { - name = "flex-2.6.1"; - - src = fetchurl { - url = "https://github.com/westes/flex/releases/download/v2.6.1/flex-2.6.1.tar.gz"; - sha256 = "0fy14c35yz2m1n1m4f02by3501fn0cca37zn7jp8lpp4b3kgjhrw"; - }; - - postPatch = '' - patchShebangs tests - '' + lib.optionalString (stdenv.hostPlatform != stdenv.buildPlatform) '' - substituteInPlace Makefile.in --replace "tests" " "; - ''; - - buildInputs = [ bison ]; - - propagatedBuildInputs = [ m4 ]; - - preConfigure = lib.optionalString (stdenv.hostPlatform != stdenv.buildPlatform) '' - ac_cv_func_malloc_0_nonnull=yes - ac_cv_func_realloc_0_nonnull=yes - ''; - - postConfigure = lib.optionalString (stdenv.isDarwin || stdenv.isCygwin) '' - sed -i Makefile -e 's/-no-undefined//;' - ''; - - meta = with lib; { - homepage = "https://github.com/westes/flex"; - description = "A fast lexical analyser generator"; - license = licenses.bsd2; - platforms = platforms.unix; - }; -} diff --git a/pkgs/development/tools/parsing/tree-sitter/default.nix b/pkgs/development/tools/parsing/tree-sitter/default.nix index 0b38d1d8e267..33d440d6d8a4 100644 --- a/pkgs/development/tools/parsing/tree-sitter/default.nix +++ b/pkgs/development/tools/parsing/tree-sitter/default.nix @@ -51,7 +51,7 @@ let mkdir $out '' + (lib.concatStrings (lib.mapAttrsToList (name: grammar: "ln -s ${fetchGrammar grammar} $out/${name}\n") - (import ./grammars)))); + (import ./grammars { inherit lib; })))); builtGrammars = let @@ -62,7 +62,7 @@ let source = fetchGrammar grammar; location = if grammar ? location then grammar.location else null; }; - grammars' = (import ./grammars); + grammars' = (import ./grammars { inherit lib; }); grammars = grammars' // { tree-sitter-ocaml = grammars'.tree-sitter-ocaml // { location = "ocaml"; }; } // { tree-sitter-ocaml-interface = grammars'.tree-sitter-ocaml // { location = "interface"; }; } // diff --git a/pkgs/development/tools/parsing/tree-sitter/grammar.nix b/pkgs/development/tools/parsing/tree-sitter/grammar.nix index d0265a584b37..96486c0c2b50 100644 --- a/pkgs/development/tools/parsing/tree-sitter/grammar.nix +++ b/pkgs/development/tools/parsing/tree-sitter/grammar.nix @@ -51,10 +51,10 @@ stdenv.mkDerivation rec { runHook postInstall ''; - # Auto strip cannot detect files missing extension. - fixupPhase = '' + # Strip failed on darwin: strip: error: symbols referenced by indirect symbol table entries that can't be stripped + fixupPhase = lib.optionalString stdenv.isLinux '' runHook preFixup - strip -s $out/parser + $STRIP $out/parser runHook postFixup ''; } diff --git a/pkgs/development/tools/parsing/tree-sitter/grammars/default.nix b/pkgs/development/tools/parsing/tree-sitter/grammars/default.nix index aa9329874360..2ecb55f5a7ae 100644 --- a/pkgs/development/tools/parsing/tree-sitter/grammars/default.nix +++ b/pkgs/development/tools/parsing/tree-sitter/grammars/default.nix @@ -1,49 +1,52 @@ +{ lib }: + { - tree-sitter-agda = (builtins.fromJSON (builtins.readFile ./tree-sitter-agda.json)); - tree-sitter-bash = (builtins.fromJSON (builtins.readFile ./tree-sitter-bash.json)); - tree-sitter-c = (builtins.fromJSON (builtins.readFile ./tree-sitter-c.json)); - tree-sitter-c-sharp = (builtins.fromJSON (builtins.readFile ./tree-sitter-c-sharp.json)); - tree-sitter-clojure = (builtins.fromJSON (builtins.readFile ./tree-sitter-clojure.json)); - tree-sitter-comment = (builtins.fromJSON (builtins.readFile ./tree-sitter-comment.json)); - tree-sitter-cpp = (builtins.fromJSON (builtins.readFile ./tree-sitter-cpp.json)); - tree-sitter-css = (builtins.fromJSON (builtins.readFile ./tree-sitter-css.json)); - tree-sitter-dart = (builtins.fromJSON (builtins.readFile ./tree-sitter-dart.json)); - tree-sitter-dot = (builtins.fromJSON (builtins.readFile ./tree-sitter-dot.json)); - tree-sitter-elisp = (builtins.fromJSON (builtins.readFile ./tree-sitter-elisp.json)); - tree-sitter-embedded-template = (builtins.fromJSON (builtins.readFile ./tree-sitter-embedded-template.json)); - tree-sitter-fennel = (builtins.fromJSON (builtins.readFile ./tree-sitter-fennel.json)); - tree-sitter-fish = (builtins.fromJSON (builtins.readFile ./tree-sitter-fish.json)); - tree-sitter-fluent = (builtins.fromJSON (builtins.readFile ./tree-sitter-fluent.json)); - tree-sitter-go = (builtins.fromJSON (builtins.readFile ./tree-sitter-go.json)); - tree-sitter-haskell = (builtins.fromJSON (builtins.readFile ./tree-sitter-haskell.json)); - tree-sitter-html = (builtins.fromJSON (builtins.readFile ./tree-sitter-html.json)); - tree-sitter-java = (builtins.fromJSON (builtins.readFile ./tree-sitter-java.json)); - tree-sitter-javascript = (builtins.fromJSON (builtins.readFile ./tree-sitter-javascript.json)); - tree-sitter-jsdoc = (builtins.fromJSON (builtins.readFile ./tree-sitter-jsdoc.json)); - tree-sitter-json = (builtins.fromJSON (builtins.readFile ./tree-sitter-json.json)); - tree-sitter-julia = (builtins.fromJSON (builtins.readFile ./tree-sitter-julia.json)); - tree-sitter-latex = (builtins.fromJSON (builtins.readFile ./tree-sitter-latex.json)); - tree-sitter-lua = (builtins.fromJSON (builtins.readFile ./tree-sitter-lua.json)); - tree-sitter-make = (builtins.fromJSON (builtins.readFile ./tree-sitter-make.json)); - tree-sitter-markdown = (builtins.fromJSON (builtins.readFile ./tree-sitter-markdown.json)); - tree-sitter-nix = (builtins.fromJSON (builtins.readFile ./tree-sitter-nix.json)); - tree-sitter-norg = (builtins.fromJSON (builtins.readFile ./tree-sitter-norg.json)); - tree-sitter-ocaml = (builtins.fromJSON (builtins.readFile ./tree-sitter-ocaml.json)); - tree-sitter-php = (builtins.fromJSON (builtins.readFile ./tree-sitter-php.json)); - tree-sitter-python = (builtins.fromJSON (builtins.readFile ./tree-sitter-python.json)); - tree-sitter-ql = (builtins.fromJSON (builtins.readFile ./tree-sitter-ql.json)); - tree-sitter-regex = (builtins.fromJSON (builtins.readFile ./tree-sitter-regex.json)); - tree-sitter-rst = (builtins.fromJSON (builtins.readFile ./tree-sitter-rst.json)); - tree-sitter-ruby = (builtins.fromJSON (builtins.readFile ./tree-sitter-ruby.json)); - tree-sitter-rust = (builtins.fromJSON (builtins.readFile ./tree-sitter-rust.json)); - tree-sitter-scala = (builtins.fromJSON (builtins.readFile ./tree-sitter-scala.json)); - tree-sitter-svelte = (builtins.fromJSON (builtins.readFile ./tree-sitter-svelte.json)); - tree-sitter-swift = (builtins.fromJSON (builtins.readFile ./tree-sitter-swift.json)); - tree-sitter-toml = (builtins.fromJSON (builtins.readFile ./tree-sitter-toml.json)); - tree-sitter-tsq = (builtins.fromJSON (builtins.readFile ./tree-sitter-tsq.json)); - tree-sitter-typescript = (builtins.fromJSON (builtins.readFile ./tree-sitter-typescript.json)); - tree-sitter-verilog = (builtins.fromJSON (builtins.readFile ./tree-sitter-verilog.json)); - tree-sitter-vim = (builtins.fromJSON (builtins.readFile ./tree-sitter-vim.json)); - tree-sitter-yaml = (builtins.fromJSON (builtins.readFile ./tree-sitter-yaml.json)); - tree-sitter-zig = (builtins.fromJSON (builtins.readFile ./tree-sitter-zig.json)); + tree-sitter-agda = lib.importJSON ./tree-sitter-agda.json; + tree-sitter-bash = lib.importJSON ./tree-sitter-bash.json; + tree-sitter-beancount = lib.importJSON ./tree-sitter-beancount.json; + tree-sitter-c = lib.importJSON ./tree-sitter-c.json; + tree-sitter-c-sharp = lib.importJSON ./tree-sitter-c-sharp.json; + tree-sitter-clojure = lib.importJSON ./tree-sitter-clojure.json; + tree-sitter-comment = lib.importJSON ./tree-sitter-comment.json; + tree-sitter-cpp = lib.importJSON ./tree-sitter-cpp.json; + tree-sitter-css = lib.importJSON ./tree-sitter-css.json; + tree-sitter-dart = lib.importJSON ./tree-sitter-dart.json; + tree-sitter-dot = lib.importJSON ./tree-sitter-dot.json; + tree-sitter-elisp = lib.importJSON ./tree-sitter-elisp.json; + tree-sitter-embedded-template = lib.importJSON ./tree-sitter-embedded-template.json; + tree-sitter-fennel = lib.importJSON ./tree-sitter-fennel.json; + tree-sitter-fish = lib.importJSON ./tree-sitter-fish.json; + tree-sitter-fluent = lib.importJSON ./tree-sitter-fluent.json; + tree-sitter-go = lib.importJSON ./tree-sitter-go.json; + tree-sitter-haskell = lib.importJSON ./tree-sitter-haskell.json; + tree-sitter-html = lib.importJSON ./tree-sitter-html.json; + tree-sitter-java = lib.importJSON ./tree-sitter-java.json; + tree-sitter-javascript = lib.importJSON ./tree-sitter-javascript.json; + tree-sitter-jsdoc = lib.importJSON ./tree-sitter-jsdoc.json; + tree-sitter-json = lib.importJSON ./tree-sitter-json.json; + tree-sitter-julia = lib.importJSON ./tree-sitter-julia.json; + tree-sitter-latex = lib.importJSON ./tree-sitter-latex.json; + tree-sitter-lua = lib.importJSON ./tree-sitter-lua.json; + tree-sitter-make = lib.importJSON ./tree-sitter-make.json; + tree-sitter-markdown = lib.importJSON ./tree-sitter-markdown.json; + tree-sitter-nix = lib.importJSON ./tree-sitter-nix.json; + tree-sitter-norg = lib.importJSON ./tree-sitter-norg.json; + tree-sitter-ocaml = lib.importJSON ./tree-sitter-ocaml.json; + tree-sitter-php = lib.importJSON ./tree-sitter-php.json; + tree-sitter-python = lib.importJSON ./tree-sitter-python.json; + tree-sitter-ql = lib.importJSON ./tree-sitter-ql.json; + tree-sitter-regex = lib.importJSON ./tree-sitter-regex.json; + tree-sitter-rst = lib.importJSON ./tree-sitter-rst.json; + tree-sitter-ruby = lib.importJSON ./tree-sitter-ruby.json; + tree-sitter-rust = lib.importJSON ./tree-sitter-rust.json; + tree-sitter-scala = lib.importJSON ./tree-sitter-scala.json; + tree-sitter-svelte = lib.importJSON ./tree-sitter-svelte.json; + tree-sitter-swift = lib.importJSON ./tree-sitter-swift.json; + tree-sitter-toml = lib.importJSON ./tree-sitter-toml.json; + tree-sitter-tsq = lib.importJSON ./tree-sitter-tsq.json; + tree-sitter-typescript = lib.importJSON ./tree-sitter-typescript.json; + tree-sitter-verilog = lib.importJSON ./tree-sitter-verilog.json; + tree-sitter-vim = lib.importJSON ./tree-sitter-vim.json; + tree-sitter-yaml = lib.importJSON ./tree-sitter-yaml.json; + tree-sitter-zig = lib.importJSON ./tree-sitter-zig.json; } diff --git a/pkgs/development/tools/parsing/tree-sitter/grammars/tree-sitter-beancount.json b/pkgs/development/tools/parsing/tree-sitter/grammars/tree-sitter-beancount.json new file mode 100644 index 000000000000..efd10efd90fb --- /dev/null +++ b/pkgs/development/tools/parsing/tree-sitter/grammars/tree-sitter-beancount.json @@ -0,0 +1,11 @@ +{ + "url": "https://github.com/polarmutex/tree-sitter-beancount", + "rev": "79ae7c1f2654a2a6936b0f37bf754e5ff59c9186", + "date": "2021-09-07T00:09:23-04:00", + "path": "/nix/store/adv2yl8kr4pk6430iclkppirhb5ibcqc-tree-sitter-beancount", + "sha256": "1g2p2dnxm50l7npg2cbycwcfz9c9682bj02nrlycyjhwl4may9dn", + "fetchLFS": false, + "fetchSubmodules": false, + "deepClone": false, + "leaveDotGit": false +} diff --git a/pkgs/development/tools/parsing/tree-sitter/grammars/tree-sitter-c-sharp.json b/pkgs/development/tools/parsing/tree-sitter/grammars/tree-sitter-c-sharp.json index 9c5e3744605c..ad7e72f61d12 100644 --- a/pkgs/development/tools/parsing/tree-sitter/grammars/tree-sitter-c-sharp.json +++ b/pkgs/development/tools/parsing/tree-sitter/grammars/tree-sitter-c-sharp.json @@ -1,9 +1,9 @@ { "url": "https://github.com/tree-sitter/tree-sitter-c-sharp", - "rev": "1b01d838cc2c0435eef59bc4ee9d0c77eea458d0", - "date": "2021-10-07T21:04:41+01:00", - "path": "/nix/store/ghx94r76acsnz4q11nhvfwf4pmslpwz8-tree-sitter-c-sharp", - "sha256": "03in0smvj6f12mmc744nk772myhrd5qjswfad1vvmmhd50y35ygx", + "rev": "69921685a7688361626600543a2beaf82b67a64d", + "date": "2021-11-03T12:36:17+00:00", + "path": "/nix/store/f4rd6avwf2flqr9yv0dvy9288qrgn2bs-tree-sitter-c-sharp", + "sha256": "18yzr0yvkbp5wf2slcfn04fc23jn0ray72ica0jyv92jkp5pxc03", "fetchLFS": false, "fetchSubmodules": false, "deepClone": false, diff --git a/pkgs/development/tools/parsing/tree-sitter/grammars/tree-sitter-cpp.json b/pkgs/development/tools/parsing/tree-sitter/grammars/tree-sitter-cpp.json index 9802cd93e8a6..32f4a9cd64f8 100644 --- a/pkgs/development/tools/parsing/tree-sitter/grammars/tree-sitter-cpp.json +++ b/pkgs/development/tools/parsing/tree-sitter/grammars/tree-sitter-cpp.json @@ -1,9 +1,9 @@ { "url": "https://github.com/tree-sitter/tree-sitter-cpp", - "rev": "f44509141e7e483323d2ec178f2d2e6c0fc041c1", - "date": "2021-10-25T11:23:25-07:00", - "path": "/nix/store/v6034ry75lfdwsiqydff601zla6xb7a2-tree-sitter-cpp", - "sha256": "0hxcpdvyyig8njga1mxp4qcnbbnr1d0aiy27vahijwbh98b081nr", + "rev": "e8dcc9d2b404c542fd236ea5f7208f90be8a6e89", + "date": "2021-10-28T08:16:36-05:00", + "path": "/nix/store/d08ymiv4qjs9hnc8b0yw700da47879wb-tree-sitter-cpp", + "sha256": "1h0q4prr8yf714abz16i2ym41sskmilmga521sxv9d75kqhyb3wl", "fetchLFS": false, "fetchSubmodules": false, "deepClone": false, diff --git a/pkgs/development/tools/parsing/tree-sitter/grammars/tree-sitter-haskell.json b/pkgs/development/tools/parsing/tree-sitter/grammars/tree-sitter-haskell.json index 807c09a70fe5..e6bc3a784224 100644 --- a/pkgs/development/tools/parsing/tree-sitter/grammars/tree-sitter-haskell.json +++ b/pkgs/development/tools/parsing/tree-sitter/grammars/tree-sitter-haskell.json @@ -1,9 +1,9 @@ { "url": "https://github.com/tree-sitter/tree-sitter-haskell", - "rev": "bf7d643b494b7c7eed909ed7fbd8447231152cb0", - "date": "2021-09-09T20:07:38+02:00", - "path": "/nix/store/nkx9qf63nwl1ql6gl3q1fm4ykqax1isx-tree-sitter-haskell", - "sha256": "1wlp6kncjadhfz8y2wn90gkbqf35iidrn0y1ga360l5wyzx1mpid", + "rev": "6668085e7d3dc6205a3ef27e6293988cf4a10419", + "date": "2021-11-08T00:39:03+01:00", + "path": "/nix/store/srhxv4hmg6if8diww64fi9spaanfkpy2-tree-sitter-haskell", + "sha256": "0bw0hszac5krw52ywzdvgb9jm2s8669ym7sb6vivxihr46inwkr2", "fetchLFS": false, "fetchSubmodules": false, "deepClone": false, diff --git a/pkgs/development/tools/parsing/tree-sitter/grammars/tree-sitter-norg.json b/pkgs/development/tools/parsing/tree-sitter/grammars/tree-sitter-norg.json index 040505918080..dbf88190fb39 100644 --- a/pkgs/development/tools/parsing/tree-sitter/grammars/tree-sitter-norg.json +++ b/pkgs/development/tools/parsing/tree-sitter/grammars/tree-sitter-norg.json @@ -1,9 +1,9 @@ { "url": "https://github.com/nvim-neorg/tree-sitter-norg", - "rev": "ff9ba2caf2c600f327370d516464d3222b9aa1f0", - "date": "2021-10-14T12:18:22+02:00", - "path": "/nix/store/4142dr4yy1jnbs7lf5kqmsn0rwyr1q7y-tree-sitter-norg", - "sha256": "0n74ad636p8q046sw94jxmfd640vabnzqzqjbqypyfw4fx95zwkj", + "rev": "995d7e0be4dc2a9655d2285405c0ef3fededf63c", + "date": "2021-11-05T21:28:42+01:00", + "path": "/nix/store/1l5dq21x6sln1gvixf20gx3pkadjad4d-tree-sitter-norg", + "sha256": "181y8p91hl5j7mrff0pmnx91d9vr24nvklgx12qvc0297vdp8c5v", "fetchLFS": false, "fetchSubmodules": false, "deepClone": false, diff --git a/pkgs/development/tools/parsing/tree-sitter/grammars/tree-sitter-rst.json b/pkgs/development/tools/parsing/tree-sitter/grammars/tree-sitter-rst.json index 4d3596b7c399..23506e55ede9 100644 --- a/pkgs/development/tools/parsing/tree-sitter/grammars/tree-sitter-rst.json +++ b/pkgs/development/tools/parsing/tree-sitter/grammars/tree-sitter-rst.json @@ -1,9 +1,9 @@ { "url": "https://github.com/stsewd/tree-sitter-rst", - "rev": "632596b1fe5816315cafa90cdf8f8000e30c93e4", - "date": "2021-10-01T17:00:56-05:00", - "path": "/nix/store/pnbw1j9ynj4zgjqxjnhq9hgqp3nxm77j-tree-sitter-rst", - "sha256": "1l831aw4a080qin7dkq04b28nnyxs1r8zqrbp92d7j4y2lz31dla", + "rev": "a5514617ae3644effa80d4696be428e4a371c01a", + "date": "2021-11-05T20:58:51-05:00", + "path": "/nix/store/is0j0cpd3i7q7liqlcrfdflabmm9rnlg-tree-sitter-rst", + "sha256": "1bw0yry968qz4arzckxpyz5zkw6ajyirrxyf78m9lr1zmz1vnivy", "fetchLFS": false, "fetchSubmodules": false, "deepClone": false, diff --git a/pkgs/development/tools/parsing/tree-sitter/grammars/tree-sitter-svelte.json b/pkgs/development/tools/parsing/tree-sitter/grammars/tree-sitter-svelte.json index d3ea25aad8f2..0052b3f8e718 100644 --- a/pkgs/development/tools/parsing/tree-sitter/grammars/tree-sitter-svelte.json +++ b/pkgs/development/tools/parsing/tree-sitter/grammars/tree-sitter-svelte.json @@ -1,9 +1,9 @@ { "url": "https://github.com/Himujjal/tree-sitter-svelte", - "rev": "c696a13a587b0595baf7998f1fb9e95c42750263", - "date": "2021-03-20T16:45:11+05:30", - "path": "/nix/store/8krdxqwpi95ljrb5jgalwgygz3aljqr8-tree-sitter-svelte", - "sha256": "0ckmss5gmvffm6danlsvgh6gwvrlznxsqf6i6ipkn7k5lxg1awg3", + "rev": "98274d94ec33e994e8354d9ddfdef58cca471294", + "date": "2021-10-28T16:53:33+05:30", + "path": "/nix/store/q3dapi6k6zdnnr0lki2ic9l6cbxdi2rq-tree-sitter-svelte", + "sha256": "1kav0h755sa1j9j930kjrykb17aih017mbi0a97ncjjrlc6nyak5", "fetchLFS": false, "fetchSubmodules": false, "deepClone": false, diff --git a/pkgs/development/tools/parsing/tree-sitter/grammars/tree-sitter-typescript.json b/pkgs/development/tools/parsing/tree-sitter/grammars/tree-sitter-typescript.json index 88ebe94afc13..68241bab540a 100644 --- a/pkgs/development/tools/parsing/tree-sitter/grammars/tree-sitter-typescript.json +++ b/pkgs/development/tools/parsing/tree-sitter/grammars/tree-sitter-typescript.json @@ -1,9 +1,9 @@ { "url": "https://github.com/tree-sitter/tree-sitter-typescript", - "rev": "11f8f151327e99361c1ff6764599daeef8633615", - "date": "2021-10-21T09:23:26-07:00", - "path": "/nix/store/r7vpx7g7d1hdxzqyigmr3v9yp5cmmzsg-tree-sitter-typescript", - "sha256": "18gk00glysqapys883hq9v33ca9x6nzgy8lk26wa5pip3spzcsm0", + "rev": "cc745b774e3986aa3a7dfd6b7a0fc01ddc853bf8", + "date": "2021-10-29T14:55:07-07:00", + "path": "/nix/store/c0a2j72pfsb7zw44jqlk73vrhvkzk2db-tree-sitter-typescript", + "sha256": "0nc8wr04h0wz169p60x4zai37yd351qj9mim7099g1fmbd1w7hq9", "fetchLFS": false, "fetchSubmodules": false, "deepClone": false, diff --git a/pkgs/development/tools/parsing/tree-sitter/update.nix b/pkgs/development/tools/parsing/tree-sitter/update.nix index bb1736b3ce71..0f7c61b37bb5 100644 --- a/pkgs/development/tools/parsing/tree-sitter/update.nix +++ b/pkgs/development/tools/parsing/tree-sitter/update.nix @@ -70,6 +70,10 @@ let # If you need a grammar that already exists in the official orga, # make sure to give it a different name. otherGrammars = { + "tree-sitter-beancount" = { + orga = "polarmutex"; + repo = "tree-sitter-beancount"; + }; "tree-sitter-clojure" = { orga = "sogaiu"; repo = "tree-sitter-clojure"; @@ -261,7 +265,7 @@ let ${foreachSh allGrammars ({name, ...}: '' # indentation hack - printf " %s = (builtins.fromJSON (builtins.readFile ./%s.json));\n" "${name}" "${name}"'')} + printf " %s = lib.importJSON ./%s.json;\n" "${name}" "${name}"'')} echo "}" ) \ > "$outputDir/default.nix" ''; diff --git a/pkgs/development/tools/pipenv/default.nix b/pkgs/development/tools/pipenv/default.nix index a3b41aa03e26..67f6b3a76f3b 100644 --- a/pkgs/development/tools/pipenv/default.nix +++ b/pkgs/development/tools/pipenv/default.nix @@ -18,11 +18,11 @@ let in buildPythonApplication rec { pname = "pipenv"; - version = "2021.5.29"; + version = "2021.11.9"; src = fetchPypi { inherit pname version; - sha256 = "05958fadcd70b2de6a27542fcd2bd72dd5c59c6d35307fdac3e06361fb06e30e"; + sha256 = "7662399162bc887ee86e96d0baa6984236228af9c1fd6594be0b18910225579d"; }; LC_ALL = "en_US.UTF-8"; diff --git a/pkgs/development/tools/poetry2nix/poetry2nix/overrides.nix b/pkgs/development/tools/poetry2nix/poetry2nix/overrides.nix index ab1a5324c98e..e464a08c849c 100644 --- a/pkgs/development/tools/poetry2nix/poetry2nix/overrides.nix +++ b/pkgs/development/tools/poetry2nix/poetry2nix/overrides.nix @@ -1700,7 +1700,7 @@ self: super: if (!enableCuda) then '' export USE_CUDA=0 '' else '' - export LD_LIBRARY_PATH="$LD_LIBRARY_PATH:${cudatoolkit}/targets/x86_64-linux/lib" + export LD_LIBRARY_PATH="$LD_LIBRARY_PATH''${LD_LIBRARY_PATH:+:}${cudatoolkit}/targets/x86_64-linux/lib" ''; preFixup = lib.optionalString (!enableCuda) '' # For some reason pytorch retains a reference to libcuda even if it @@ -1739,9 +1739,9 @@ self: super: ]; preConfigure = if (enableCuda) then '' - export LD_LIBRARY_PATH="$LD_LIBRARY_PATH:${self.torch}/${self.python.sitePackages}/torch/lib:${lib.makeLibraryPath [ cudatoolkit "${cudatoolkit}" ]}" + export LD_LIBRARY_PATH="$LD_LIBRARY_PATH''${LD_LIBRARY_PATH:+:}${self.torch}/${self.python.sitePackages}/torch/lib:${lib.makeLibraryPath [ cudatoolkit "${cudatoolkit}" ]}" '' else '' - export LD_LIBRARY_PATH="$LD_LIBRARY_PATH:${self.torch}/${self.python.sitePackages}/torch/lib" + export LD_LIBRARY_PATH="$LD_LIBRARY_PATH''${LD_LIBRARY_PATH:+:}${self.torch}/${self.python.sitePackages}/torch/lib" ''; })) { }; diff --git a/pkgs/development/tools/pretty-simple/default.nix b/pkgs/development/tools/pretty-simple/default.nix index c55e176176d9..0a33b6e6b2ea 100644 --- a/pkgs/development/tools/pretty-simple/default.nix +++ b/pkgs/development/tools/pretty-simple/default.nix @@ -1,6 +1,6 @@ { haskell, haskellPackages, lib }: -haskell.lib.justStaticExecutables (haskell.lib.overrideCabal haskellPackages.pretty-simple (oldAttrs: { +haskell.lib.compose.justStaticExecutables (haskell.lib.compose.overrideCabal (oldAttrs: { maintainers = (oldAttrs.maintainers or []) ++ [ lib.maintainers.cdepillabout ]; @@ -8,5 +8,5 @@ haskell.lib.justStaticExecutables (haskell.lib.overrideCabal haskellPackages.pre configureFlags = (oldAttrs.configureFlags or []) ++ ["-fbuildexe"]; buildDepends = (oldAttrs.buildDepends or []) ++ [haskellPackages.optparse-applicative]; -})) +}) haskellPackages.pretty-simple) diff --git a/pkgs/development/tools/profiling/EZTrace/default.nix b/pkgs/development/tools/profiling/EZTrace/default.nix index e057fc8ebe18..41b343cdf1c5 100644 --- a/pkgs/development/tools/profiling/EZTrace/default.nix +++ b/pkgs/development/tools/profiling/EZTrace/default.nix @@ -1,31 +1,33 @@ -{ lib, stdenv -, fetchurl, autoconf, gfortran -, libelf, libiberty, zlib, libbfd, libopcodes -, buildPackages +{ lib, + stdenv, + fetchFromGitLab, + gfortran, + libelf, + libiberty, + zlib, + libbfd, + libopcodes, + buildPackages, + autoreconfHook }: stdenv.mkDerivation rec { - version = "1.1-7"; pname = "EZTrace"; + version = "1.1-11"; - src = fetchurl { - url = "https://gforge.inria.fr/frs/download.php/file/37155/eztrace-${version}.tar.gz"; - sha256 = "0cr2d4fdv4ljvag55dsz3rpha1jan2gc3jhr06ycyk43450pl58p"; + src = fetchFromGitLab { + owner = "eztrace"; + repo = "eztrace"; + rev = "eztrace-${version}"; + sha256 = "sha256-A6HMr4ib5Ka1lTbbTQOdq3kIdCoN/CwAKRdXdv9wpfU="; }; - # Goes past the rpl_malloc linking failure; fixes silent file breakage - preConfigure = '' - export ac_cv_func_malloc_0_nonnull=yes - substituteInPlace ./configure \ - --replace "/usr/bin/file" "${buildPackages.file}/bin/file" - ''; - - nativeBuildInputs = [ autoconf gfortran ]; + nativeBuildInputs = [ gfortran autoreconfHook ]; buildInputs = [ libelf libiberty zlib libbfd libopcodes ]; - meta = { + meta = with lib; { description = "Tool that aims at generating automatically execution trace from HPC programs"; - license = lib.licenses.cecill-b; - maintainers = with lib.maintainers; [ ]; + license = licenses.cecill-b; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/development/tools/pscale/default.nix b/pkgs/development/tools/pscale/default.nix index 71977d1a74ef..e5b5f9b06076 100644 --- a/pkgs/development/tools/pscale/default.nix +++ b/pkgs/development/tools/pscale/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "pscale"; - version = "0.76.0"; + version = "0.85.0"; src = fetchFromGitHub { owner = "planetscale"; repo = "cli"; rev = "v${version}"; - sha256 = "sha256-yfTfWMyRo1QP0QCbJOxNC1eAYmJQ/yKvWjThXd7r7Bc="; + sha256 = "sha256-I2t5tuBlO2RpY8+zWSTIDOziriqE6PGKVIwPdmvXuKo="; }; - vendorSha256 = "sha256-dD+8ZraY0RvoGxJZSWG31Iif+R5CDNtQ9H7J8Ty0x7U="; + vendorSha256 = "sha256-V7iXPM2WTR5zls/EFxpoLKrconP88om6y2CFNiuS6g4="; meta = with lib; { homepage = "https://www.planetscale.com/"; diff --git a/pkgs/development/tools/puppet/puppet-lint/Gemfile.lock b/pkgs/development/tools/puppet/puppet-lint/Gemfile.lock index 870652b567a4..7569b5e2d13c 100644 --- a/pkgs/development/tools/puppet/puppet-lint/Gemfile.lock +++ b/pkgs/development/tools/puppet/puppet-lint/Gemfile.lock @@ -1,7 +1,7 @@ GEM remote: https://rubygems.org/ specs: - puppet-lint (2.3.6) + puppet-lint (2.5.2) PLATFORMS ruby @@ -10,4 +10,4 @@ DEPENDENCIES puppet-lint BUNDLED WITH - 2.1.4 + 2.2.24 diff --git a/pkgs/development/tools/puppet/puppet-lint/gemset.nix b/pkgs/development/tools/puppet/puppet-lint/gemset.nix index d42626f1cd59..e3911e63536a 100644 --- a/pkgs/development/tools/puppet/puppet-lint/gemset.nix +++ b/pkgs/development/tools/puppet/puppet-lint/gemset.nix @@ -1,10 +1,12 @@ { puppet-lint = { + groups = ["default"]; + platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1wyk2l440d96ps3x127r52n51kqpqi2nzb3xlg92qn6aksqhnkis"; + sha256 = "1rcj3cb6lf90g6vvhh3c9p8yn7pgibglf9k5878bzd6pn5ag0h9v"; type = "gem"; }; - version = "2.3.6"; + version = "2.5.2"; }; } diff --git a/pkgs/development/python-modules/pur/default.nix b/pkgs/development/tools/pur/default.nix similarity index 53% rename from pkgs/development/python-modules/pur/default.nix rename to pkgs/development/tools/pur/default.nix index d2bc7d5824dc..dc37e3fa20f1 100644 --- a/pkgs/development/python-modules/pur/default.nix +++ b/pkgs/development/tools/pur/default.nix @@ -1,19 +1,27 @@ { lib -, buildPythonPackage -, click +, python3 , fetchFromGitHub -, pytestCheckHook }: -buildPythonPackage rec { +let + py = python3.override { + packageOverrides = self: super: { + # newest version doesn't support click >8.0 https://github.com/alanhamlett/pip-update-requirements/issues/38 + click = self.callPackage ../../../development/python-modules/click/7.nix { }; + }; + }; + inherit (py.pkgs) buildPythonApplication click pytestCheckHook; +in + +buildPythonApplication rec { pname = "pur"; - version = "5.4.1"; + version = "5.4.2"; src = fetchFromGitHub { owner = "alanhamlett"; repo = "pip-update-requirements"; rev = version; - sha256 = "sha256-a2wViLJW+UXgHcURxr4irFVkH8STH84AVcwQIkvH+Fg="; + sha256 = "sha256-coJO9AYm0Qx0arMf/e+pZFG/VxK6bnxxXRgw7x7V2hY="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/tools/purescript/spago/default.nix b/pkgs/development/tools/purescript/spago/default.nix index 980bca0fa2db..51516ed5b256 100644 --- a/pkgs/development/tools/purescript/spago/default.nix +++ b/pkgs/development/tools/purescript/spago/default.nix @@ -12,14 +12,14 @@ let spago = - haskell.lib.justStaticExecutables - (haskell.lib.overrideCabal haskellPackages.spago (oldAttrs: { + haskell.lib.compose.justStaticExecutables + (haskell.lib.compose.overrideCabal (oldAttrs: { maintainers = (oldAttrs.maintainers or []) ++ [ lib.maintainers.cdepillabout ]; changelog = "https://github.com/purescript/spago/releases/tag/${oldAttrs.version}"; - })); + }) haskellPackages.spago); in spago.overrideAttrs (oldAttrs: { diff --git a/pkgs/development/tools/py-spy/default.nix b/pkgs/development/tools/py-spy/default.nix index 3a31d772cd23..ed1f7aa0f795 100644 --- a/pkgs/development/tools/py-spy/default.nix +++ b/pkgs/development/tools/py-spy/default.nix @@ -2,13 +2,13 @@ rustPlatform.buildRustPackage rec { pname = "py-spy"; - version = "0.3.9"; + version = "0.3.10"; src = fetchFromGitHub { owner = "benfred"; repo = "py-spy"; rev = "v${version}"; - sha256 = "sha256-jGHTt3MMSNBVi9W3JRWxKrao1OXrV8mB1pXoiZcQ7SU="; + sha256 = "sha256-OiYYWLbdDrte0+YeJklt5pX2u2f4PnWJ4dyGWJBiTmQ="; }; NIX_CFLAGS_COMPILE = "-L${libunwind}/lib"; @@ -20,7 +20,7 @@ rustPlatform.buildRustPackage rec { checkInputs = [ python3 ]; - cargoSha256 = "sha256-UW8fqauuE2e6NPsJP2YtjU8bwi60UWJvGvZ7dglmPA0="; + cargoSha256 = "sha256-Dn+1C+RRjxu8onejeKB9WsVGtthTy3Uit9jm2JtyN1w="; meta = with lib; { description = "Sampling profiler for Python programs"; diff --git a/pkgs/development/tools/pypi-mirror/default.nix b/pkgs/development/tools/pypi-mirror/default.nix index 945fafa7648c..54bc09d6b9a3 100644 --- a/pkgs/development/tools/pypi-mirror/default.nix +++ b/pkgs/development/tools/pypi-mirror/default.nix @@ -4,13 +4,13 @@ }: python3.pkgs.buildPythonApplication rec { pname = "pypi-mirror"; - version = "4.0.7"; + version = "4.1.0"; src = fetchFromGitHub { owner = "montag451"; repo = pname; rev = "v${version}"; - sha256 = "0sjzjvq2jnsr5mfyvkww3rfk3k5xcl8wa07q614850m0sn907laz"; + sha256 = "077f3asi5fdbb2j2ll4xdwv7ndfbfr81bpn3zi55h6idfdc7zzc0"; }; pythonImportsCheck = [ "pypi_mirror" ]; diff --git a/pkgs/development/tools/rust/cargo-deadlinks/default.nix b/pkgs/development/tools/rust/cargo-deadlinks/default.nix index a7c1b885a6e4..446f3cec37d9 100644 --- a/pkgs/development/tools/rust/cargo-deadlinks/default.nix +++ b/pkgs/development/tools/rust/cargo-deadlinks/default.nix @@ -16,7 +16,9 @@ rustPlatform.buildRustPackage rec { checkFlags = [ # uses internet "--skip non_existent_http_link --skip working_http_check" - ]; + ] ++ lib.optional (stdenv.hostPlatform.system != "x86_64-linux") + # assumes the target is x86_64-unknown-linux-gnu + "--skip simple_project::it_checks_okay_project_correctly"; buildInputs = lib.optional stdenv.isDarwin Security; diff --git a/pkgs/development/tools/rust/cargo-deny/default.nix b/pkgs/development/tools/rust/cargo-deny/default.nix index ba151a17549d..7fe476c842c5 100644 --- a/pkgs/development/tools/rust/cargo-deny/default.nix +++ b/pkgs/development/tools/rust/cargo-deny/default.nix @@ -1,36 +1,42 @@ -{ stdenv -, lib +{ lib , rustPlatform , fetchFromGitHub -, perl, pkg-config, openssl, Security, libiconv, curl +, pkg-config +, openssl +, stdenv +, curl +, Security }: rustPlatform.buildRustPackage rec { pname = "cargo-deny"; - version = "0.10.0"; + version = "0.10.1"; src = fetchFromGitHub { owner = "EmbarkStudios"; repo = pname; rev = version; - sha256 = "sha256-YXIEM8COtjc3yD8gxoeoJwkGyJwMCCn40591iO6ERxc="; + sha256 = "sha256-ZpTwqwxh1/Yz5MBlv1KvD/sBTaFb5m7cQXLkUAGZegc="; }; - cargoSha256 = "sha256-4PcYnpoRvl01n4Y4usrlLejWwcB5BJnFGqqfbqLD1gI="; + cargoSha256 = "sha256-JwljoLTEolKCaob7IPYan5N9YIZvnlj1uRZ1mNACGbQ="; doCheck = false; - nativeBuildInputs = [ perl pkg-config ]; + nativeBuildInputs = [ pkg-config ]; - buildInputs = [ openssl ] - ++ lib.optionals stdenv.isDarwin [ Security libiconv curl ]; + buildInputs = [ openssl ] + ++ lib.optionals stdenv.isDarwin [ curl Security ]; + + cargoBuildFlags = [ "--no-default-features" ]; + + cargoTestFlags = cargoBuildFlags; meta = with lib; { description = "Cargo plugin to generate list of all licenses for a crate"; homepage = "https://github.com/EmbarkStudios/cargo-deny"; - license = licenses.asl20; - platforms = platforms.unix; - maintainers = with maintainers; [ matthiasbeyer ]; + changelog = "https://github.com/EmbarkStudios/cargo-deny/blob/${version}/CHANGELOG.md"; + license = with licenses; [ asl20 /* or */ mit ]; + maintainers = with maintainers; [ figsoda matthiasbeyer ]; }; } - diff --git a/pkgs/development/tools/rust/cargo-modules/default.nix b/pkgs/development/tools/rust/cargo-modules/default.nix index f894915c24ec..5ef0168383c5 100644 --- a/pkgs/development/tools/rust/cargo-modules/default.nix +++ b/pkgs/development/tools/rust/cargo-modules/default.nix @@ -1,22 +1,27 @@ -{ lib, rustPlatform, fetchFromGitHub }: +{ lib, rustPlatform, fetchFromGitHub, stdenv, CoreFoundation, CoreServices }: rustPlatform.buildRustPackage rec { pname = "cargo-modules"; - version = "0.5.0"; + version = "0.5.6"; src = fetchFromGitHub { owner = "regexident"; repo = pname; rev = version; - sha256 = "0y6ag8nar85l2fh2ca41fglkzc74cv1p5szxrhk1jdqnd2qzhvjp"; + sha256 = "sha256-bLljwxNrCmg1ZWfSninIxJIFIn2oHY8dmbHYPdwtD+M="; }; - cargoSha256 = "0m5r36p57w4vw2g3hg12s38ay328swjb0qfl381xwb2xqx10g8kx"; + cargoSha256 = "sha256-heyVeQwEIOA9qtyXnHY8lPo06YgIUJaWCtaht9dWLoo="; + + buildInputs = lib.optionals stdenv.isDarwin [ + CoreFoundation + CoreServices + ]; meta = with lib; { description = "A cargo plugin for showing a tree-like overview of a crate's modules"; homepage = "https://github.com/regexident/cargo-modules"; license = with licenses; [ mpl20 ]; - maintainers = with maintainers; [ rvarago ]; + maintainers = with maintainers; [ figsoda rvarago ]; }; } diff --git a/pkgs/development/tools/rust/cargo-spellcheck/default.nix b/pkgs/development/tools/rust/cargo-spellcheck/default.nix index 92863d76de9a..43571a26ab6f 100644 --- a/pkgs/development/tools/rust/cargo-spellcheck/default.nix +++ b/pkgs/development/tools/rust/cargo-spellcheck/default.nix @@ -2,6 +2,8 @@ , rustPlatform , fetchFromGitHub , libclang +, stdenv +, Security }: rustPlatform.buildRustPackage rec { @@ -17,6 +19,8 @@ rustPlatform.buildRustPackage rec { cargoSha256 = "1p4iirblk6idvfhn8954v8lbxlzj0gbd8fv4wq03hfrdqisjqcsn"; + buildInputs = lib.optional stdenv.isDarwin Security; + LIBCLANG_PATH = "${libclang.lib}/lib"; checkFlags = [ diff --git a/pkgs/development/tools/rust/racer/default.nix b/pkgs/development/tools/rust/racer/default.nix index e0e22f0f504f..f6717b36b203 100644 --- a/pkgs/development/tools/rust/racer/default.nix +++ b/pkgs/development/tools/rust/racer/default.nix @@ -1,17 +1,15 @@ -{ lib, stdenv, fetchFromGitHub, rustPlatform, makeWrapper, substituteAll, Security }: +{ lib, rustPlatform, fetchCrate, makeWrapper, stdenv, Security }: rustPlatform.buildRustPackage rec { pname = "racer"; - version = "2.1.46"; + version = "2.1.48"; - src = fetchFromGitHub { - owner = "racer-rust"; - repo = "racer"; - rev = "v${version}"; - sha256 = "sha256-7h1w5Yyt5VN6+pYuTTbdM1Nrd8aDEhPLusxuIsdS+mQ="; + src = fetchCrate { + inherit pname version; + sha256 = "sha256-lat5s9+AMFI3VXiWqjLESZrtq3IwOZhlt+5BhYoonfA="; }; - cargoSha256 = "sha256-fllhB+so6H36b+joW0l+NBtz3PefOKdj6C8qKQPuJpk="; + cargoSha256 = "sha256-jGsvCmrPGVzWdx7V3J4bBK+SF2o+icORmVKuwqYxdh4="; nativeBuildInputs = [ makeWrapper ]; buildInputs = lib.optional stdenv.isDarwin Security; @@ -44,5 +42,7 @@ rustPlatform.buildRustPackage rec { homepage = "https://github.com/racer-rust/racer"; license = licenses.mit; maintainers = with maintainers; [ jagajaga ]; + # error[E0199]: implementing the trait `Step` is not unsafe + broken = true; }; } diff --git a/pkgs/development/tools/rust/rust-script/default.nix b/pkgs/development/tools/rust/rust-script/default.nix index b13a1f66db2d..947b4721b0a3 100644 --- a/pkgs/development/tools/rust/rust-script/default.nix +++ b/pkgs/development/tools/rust/rust-script/default.nix @@ -2,19 +2,18 @@ rustPlatform.buildRustPackage rec { pname = "rust-script"; - version = "0.17.0"; + version = "0.18.0"; src = fetchFromGitHub { owner = "fornwall"; repo = pname; rev = "v${version}"; - sha256 = "0jz8hlvl31c5h8whd6pnpmslw6w6alkxijd9lhgric1yypiym9x3"; + sha256 = "sha256-B/xh0eYRJxjjIEXdxmLz6usQvo4v/HQK5VNnnjcDBjM="; }; - cargoSha256 = "sha256-hg0QtxR1qm/x8G6HoN7xAyOwh9jiQvX2wWYjUR8YvMs="; + cargoSha256 = "sha256-7qMrrs6K+mJVDHNkGQDb6abM18RyBPToseTNM7ogdQ0="; - # TODO: switch to `cargoCheckType = "false"` after #138822 is merged - # tests only work in debug mode + # tests require network access doCheck = false; meta = with lib; { diff --git a/pkgs/development/tools/scenebuilder/default.nix b/pkgs/development/tools/scenebuilder/default.nix index 6bac5a95fcb7..b2e1e69487ed 100644 --- a/pkgs/development/tools/scenebuilder/default.nix +++ b/pkgs/development/tools/scenebuilder/default.nix @@ -1,6 +1,6 @@ { lib, stdenv, fetchFromGitHub, jdk11, gradleGen, makeDesktopItem, copyDesktopItems, perl, writeText, runtimeShell, makeWrapper, glib, wrapGAppsHook }: let - gradle = (gradleGen.override (old: { java = jdk11; })).gradle_6_8; + gradle = (gradleGen.override (old: { java = jdk11; })).gradle_6_9; pname = "scenebuilder"; version = "15.0.1"; diff --git a/pkgs/development/tools/selene/default.nix b/pkgs/development/tools/selene/default.nix index 810eee56cd19..2f6e731ea332 100644 --- a/pkgs/development/tools/selene/default.nix +++ b/pkgs/development/tools/selene/default.nix @@ -10,16 +10,16 @@ rustPlatform.buildRustPackage rec { pname = "selene"; - version = "0.14.0"; + version = "0.15.0"; src = fetchFromGitHub { owner = "kampfkarren"; repo = pname; rev = version; - sha256 = "0c228aakwf679wyxir0jwry3khv7phlaf77w675gn1wr4fxdg5gr"; + sha256 = "sha256-tA1exZ97N2tAagAljt+MOSGh6objOiqbZXUaBZ62Sls="; }; - cargoSha256 = "sha256-5GODuqjVo3b1SzRgXVBIKec2tSS335EAUAmRlcpbClE="; + cargoSha256 = "sha256-4vCKiTWwnibNK6/S1GOYRurgm2Aq1e9o4rAmp0hqGeA="; nativeBuildInputs = lib.optional robloxSupport pkg-config; diff --git a/pkgs/development/tools/sentry-cli/default.nix b/pkgs/development/tools/sentry-cli/default.nix index 32f362a834b8..c832f39b0832 100644 --- a/pkgs/development/tools/sentry-cli/default.nix +++ b/pkgs/development/tools/sentry-cli/default.nix @@ -9,13 +9,13 @@ }: rustPlatform.buildRustPackage rec { pname = "sentry-cli"; - version = "1.68.0"; + version = "1.71.0"; src = fetchFromGitHub { owner = "getsentry"; repo = "sentry-cli"; rev = version; - sha256 = "sha256-JhKRfeAaSs4KwfcI88UbqIXNw0aZytPkIxkwrg1d2xM="; + sha256 = "0iw6skcxnqqa0vj5q1ra855gxgjj9a26hj85nm9p49ai5l85bkgv"; }; doCheck = false; @@ -25,7 +25,7 @@ rustPlatform.buildRustPackage rec { buildInputs = [ openssl ] ++ lib.optionals stdenv.isDarwin [ Security SystemConfiguration ]; nativeBuildInputs = [ pkg-config ]; - cargoSha256 = "sha256-iV3D4ka8Sg1FMRne3A6npmZm3hFP9Qi/NdmT62BtO+8="; + cargoSha256 = "0n9354mm97z3n001airipq8k58i7lg20p2m9yfx9y0zhsagyhmj8"; meta = with lib; { homepage = "https://docs.sentry.io/cli/"; diff --git a/pkgs/development/tools/shellcheck/default.nix b/pkgs/development/tools/shellcheck/default.nix index 284ce6d817a9..cf767515082e 100644 --- a/pkgs/development/tools/shellcheck/default.nix +++ b/pkgs/development/tools/shellcheck/default.nix @@ -15,7 +15,7 @@ let }; in drv' // { meta = meta' // overrideFn meta'; }; - bin = haskell.lib.justStaticExecutables haskellPackages.ShellCheck; + bin = haskell.lib.compose.justStaticExecutables haskellPackages.ShellCheck; shellcheck = stdenv.mkDerivation { pname = "shellcheck"; diff --git a/pkgs/development/tools/shellharden/default.nix b/pkgs/development/tools/shellharden/default.nix index 09c77f087d26..d444a3685c5c 100644 --- a/pkgs/development/tools/shellharden/default.nix +++ b/pkgs/development/tools/shellharden/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "shellharden"; - version = "4.1.2"; + version = "4.1.3"; src = fetchFromGitHub { owner = "anordal"; repo = pname; rev = "v${version}"; - sha256 = "1003kgnql0z158d3rzz8s3i7s7rx9hjqqvp3li8xhzrgszvkgqk4"; + sha256 = "04pgmkaqjb1lmlwjjipcrqh9qcyjjkr39vi3h5fl9sr71c8g7dnd"; }; - cargoSha256 = "1h4wp9xs9nq90ml2km9gd0afrzri6fbgskz6d15jqykm2fw72l88"; + cargoSha256 = "0bjqgw49msl288yfa7bl31bfa9kdy4zh1q3j0lyw4vvkv2r14pf5"; postPatch = "patchShebangs moduletests/run"; diff --git a/pkgs/development/tools/skaffold/default.nix b/pkgs/development/tools/skaffold/default.nix index af590bff1557..5921f8d19d47 100644 --- a/pkgs/development/tools/skaffold/default.nix +++ b/pkgs/development/tools/skaffold/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "skaffold"; - version = "1.32.0"; + version = "1.34.0"; src = fetchFromGitHub { owner = "GoogleContainerTools"; repo = "skaffold"; rev = "v${version}"; - sha256 = "sha256-LvTAM3uYzSEhX7zz7Z+VcMYV5p80EnyaEIu0CmAUaSg="; + sha256 = "sha256-y9y1aUy2fDvMuYCKU2g2lBSmX53NDy9v0XImHXqdJqM="; }; - vendorSha256 = "sha256-TUpHg4yvZ0WKcUFXjWh4Q4/gRtJ93xNa/gLkj5PYo/w="; + vendorSha256 = "sha256-h5UybTcvr9Zxpfw7zBCeSAG2oAZzFWpuYugqXUCMtjs="; subPackages = ["cmd/skaffold"]; diff --git a/pkgs/development/tools/skopeo/default.nix b/pkgs/development/tools/skopeo/default.nix index 42afb791ddf1..556b9c4a2587 100644 --- a/pkgs/development/tools/skopeo/default.nix +++ b/pkgs/development/tools/skopeo/default.nix @@ -14,13 +14,13 @@ buildGoModule rec { pname = "skopeo"; - version = "1.5.0"; + version = "1.5.1"; src = fetchFromGitHub { rev = "v${version}"; owner = "containers"; repo = "skopeo"; - sha256 = "sha256-75zrOYiwlpHbEgmpJ9THYKbF4sL4Jp009/+Fw12Wvys="; + sha256 = "sha256-GaOfONUAN+bNSyodDbZyahMheU5fnjuAp4/94jy+9Hg="; }; outputs = [ "out" "man" ]; diff --git a/pkgs/development/tools/stylua/default.nix b/pkgs/development/tools/stylua/default.nix index 1dcb32401283..229cc9dd4d82 100644 --- a/pkgs/development/tools/stylua/default.nix +++ b/pkgs/development/tools/stylua/default.nix @@ -8,16 +8,16 @@ rustPlatform.buildRustPackage rec { pname = "stylua"; - version = "0.11.0"; + version = "0.11.1"; src = fetchFromGitHub { owner = "johnnymorganz"; repo = pname; rev = "v${version}"; - sha256 = "sha256-mHmLwgAyLEWfhSVy7WmJN1Z5BdA+3hoHujbKn2Q9fxI="; + sha256 = "sha256-+5c8baeToaT4k/2VSK/XQki0NPsWTnS6Ap3NpWvj+yI="; }; - cargoSha256 = "sha256-1aze1U6NrL8KPK5v5NYCdyTTqoczkg32xR5V0jApQWw="; + cargoSha256 = "sha256-uIcP5ZNb8K5pySw0Qq46hev9VUbq8XVqmzBBGPagUfE="; cargoBuildFlags = lib.optionals lua52Support [ "--features" "lua52" ] ++ lib.optionals luauSupport [ "--features" "luau" ]; diff --git a/pkgs/development/tools/sumneko-lua-language-server/default.nix b/pkgs/development/tools/sumneko-lua-language-server/default.nix index 1290da858746..80071b1d0606 100644 --- a/pkgs/development/tools/sumneko-lua-language-server/default.nix +++ b/pkgs/development/tools/sumneko-lua-language-server/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "sumneko-lua-language-server"; - version = "2.4.5"; + version = "2.4.7"; src = fetchFromGitHub { owner = "sumneko"; repo = "lua-language-server"; rev = version; - sha256 = "sha256-7eTYHZDJLmYTwe0K+RJMRl4tRz9o0DeniHD5+v9f1Jw="; + sha256 = "sha256-lO+FUuU7uihbRLI1X9qhOvgukRGfhDeSM/JdIqr96Fk="; fetchSubmodules = true; }; @@ -38,6 +38,9 @@ stdenv.mkDerivation rec { install -m644 -t "$out"/share/lua-language-server {debugger,main}.lua cp -r locale meta script "$out"/share/lua-language-server + # necessary for --version to work: + install -m644 -t "$out"/share/lua-language-server changelog.md + makeWrapper "$out"/share/lua-language-server/bin/Linux/lua-language-server \ $out/bin/lua-language-server \ --add-flags "-E $out/share/lua-language-server/main.lua \ diff --git a/pkgs/development/tools/vagrant/default.nix b/pkgs/development/tools/vagrant/default.nix index 259ca5cfc94c..3920e4fcac04 100644 --- a/pkgs/development/tools/vagrant/default.nix +++ b/pkgs/development/tools/vagrant/default.nix @@ -5,9 +5,9 @@ let # NOTE: bumping the version and updating the hash is insufficient; # you must use bundix to generate a new gemset.nix in the Vagrant source. - version = "2.2.18"; + version = "2.2.19"; url = "https://github.com/hashicorp/vagrant/archive/v${version}.tar.gz"; - sha256 = "sha256-NQiwkGuDLXMXyNNiIHmOwnS3IefvY9DPmRxo8Z2drpA="; + sha256 = "sha256-Tw5rHUZuJt6taCxNSEPo9koBLrpL6RUGrmxtNNPZyPk="; deps = bundlerEnv rec { name = "${pname}-${version}"; diff --git a/pkgs/development/tools/vagrant/gemset.nix b/pkgs/development/tools/vagrant/gemset.nix index a4014789b061..dae14cb5e7a5 100644 --- a/pkgs/development/tools/vagrant/gemset.nix +++ b/pkgs/development/tools/vagrant/gemset.nix @@ -64,20 +64,20 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1iykfw2j6dd26rhgid3a17zghrmbmi68ppf3a7cdkvii68p4f37a"; + sha256 = "15yrwawhvkjvfg0dsf8z81876ddj6161q0wh5s7pw4sim8z8pspr"; type = "gem"; }; - version = "0.85.0"; + version = "0.88.0"; }; ffi = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1wgvaclp4h9y8zkrgz8p2hqkrgr4j7kz0366mik0970w532cbmcq"; + sha256 = "0ssxcywmb3flxsjdg13is6k01807zgzasdhj4j48dm7ac59cmksn"; type = "gem"; }; - version = "1.15.3"; + version = "1.15.4"; }; gssapi = { dependencies = ["ffi"]; @@ -127,10 +127,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0g2fnag935zn2ggm5cn6k4s4xvv53v2givj1j90szmvavlpya96a"; + sha256 = "0vdd1kii40qhbr9n8qx71k2gskq6rkl8ygy8hw5hfj8bb5a364xf"; type = "gem"; }; - version = "1.8.10"; + version = "1.8.11"; }; listen = { dependencies = ["rb-fsevent" "rb-inotify"]; @@ -138,10 +138,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1dq7yd4s9accpjiq0f92sgikw3whc5wnjn065laggkpqcqgx75gh"; + sha256 = "0ncfhdkjiwq9l1pm87ax2pa20kz2j0dz56vi74cnr5a6cfk0qb5p"; type = "gem"; }; - version = "3.6.0"; + version = "3.7.0"; }; little-plugger = { groups = ["default"]; @@ -190,10 +190,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0dlxwc75iy0dj23x824cxpvpa7c8aqcpskksrmb32j6m66h5mkcy"; + sha256 = "1z5wvk6qi4ws1kjh7xn1rfirqw5m72bwvqacck1fjpbh33pcrwxv"; type = "gem"; }; - version = "3.2021.0704"; + version = "3.2021.0901"; }; multi_json = { groups = ["default"]; @@ -274,10 +274,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1rmm9ym3qxysrmvgnrad28llnzj6wj9ljir8zaw9myas7m8vhvsq"; + sha256 = "0wpn2m28qs7s95nqg67dn5vpyh05q7d0w6sm4svhflm41cd0akr4"; type = "gem"; }; - version = "0.2.6"; + version = "0.2.7"; }; rexml = { groups = ["default"]; diff --git a/pkgs/development/tools/wabt/default.nix b/pkgs/development/tools/wabt/default.nix index aaffa4f82130..344ab9fe9f74 100644 --- a/pkgs/development/tools/wabt/default.nix +++ b/pkgs/development/tools/wabt/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "wabt"; - version = "1.0.23"; + version = "1.0.24"; src = fetchFromGitHub { owner = "WebAssembly"; repo = "wabt"; rev = version; - sha256 = "1drjngcqkaahzk92jysrzv86fhj02c074xffd7kn3k6q8fxc0976"; + sha256 = "sha256-/blukivL6+xsnChxDp5gCr5w8S3bBuhO459YkLGxYmA="; fetchSubmodules = true; }; diff --git a/pkgs/development/tools/wrangler/default.nix b/pkgs/development/tools/wrangler/default.nix index 3c16977ae7ba..1a0bd1ffe13c 100644 --- a/pkgs/development/tools/wrangler/default.nix +++ b/pkgs/development/tools/wrangler/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "wrangler"; - version = "1.19.4"; + version = "1.19.5"; src = fetchFromGitHub { owner = "cloudflare"; repo = pname; rev = "v${version}"; - sha256 = "sha256-Qe/bl5H+ieHGC2GXdWlXCR+ZI1SNfy4l+VIGMy193lk="; + sha256 = "sha256-r8Ni6r1NpHJ0UVEV+aG1RkGn0GQijTiWWZyQWJRXPi8="; }; - cargoSha256 = "sha256-KYxqir/wxvyn9sgLF0OjM2Zn42Wt9eUqIX0Xbsvq1c4="; + cargoSha256 = "sha256-GWBY4diq6VFpBcb1ROmJcXX/zJGwanja8eoaxxm+ij8="; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/development/tools/yarn/default.nix b/pkgs/development/tools/yarn/default.nix index 518b98021079..50d29cb4a1d4 100644 --- a/pkgs/development/tools/yarn/default.nix +++ b/pkgs/development/tools/yarn/default.nix @@ -1,12 +1,12 @@ -{ lib, stdenv, nodejs, fetchzip }: +{ lib, stdenv, nodejs, fetchzip, testVersion, yarn }: stdenv.mkDerivation rec { pname = "yarn"; - version = "1.22.15"; + version = "1.22.17"; src = fetchzip { url = "https://github.com/yarnpkg/yarn/releases/download/v${version}/yarn-v${version}.tar.gz"; - sha256 = "1xw9z55wvij6x0dns6z0xydywvlc80kgvsh3w4xxkq9cbiman1v6"; + sha256 = "1skzlyv2976bl1063f94422jbjy4ns1nxl622biizq31z4821yvj"; }; buildInputs = [ nodejs ]; @@ -18,6 +18,8 @@ stdenv.mkDerivation rec { ln -s $out/libexec/yarn/bin/yarn.js $out/bin/yarnpkg ''; + passthru.tests = testVersion { package = yarn; }; + meta = with lib; { homepage = "https://yarnpkg.com/"; description = "Fast, reliable, and secure dependency management for javascript"; diff --git a/pkgs/development/web/netlify-cli/default.nix b/pkgs/development/web/netlify-cli/default.nix index f16cce4c1511..6c3e8dd4e86e 100644 --- a/pkgs/development/web/netlify-cli/default.nix +++ b/pkgs/development/web/netlify-cli/default.nix @@ -6,7 +6,7 @@ in preRebuild = '' export ESBUILD_BINARY_PATH="${pkgs.esbuild_netlify}/bin/esbuild" ''; - src = fetchFromGitHub (builtins.fromJSON (builtins.readFile ./netlify-cli.json)); + src = fetchFromGitHub (lib.importJSON ./netlify-cli.json); bypassCache = true; reconstructLock = true; passthru.tests.test = callPackage ./test.nix { }; diff --git a/pkgs/development/web/netlify-cli/generate.sh b/pkgs/development/web/netlify-cli/generate.sh index 41858cd98097..5d12fde8689e 100755 --- a/pkgs/development/web/netlify-cli/generate.sh +++ b/pkgs/development/web/netlify-cli/generate.sh @@ -2,7 +2,7 @@ set -eu -o pipefail cd "$( dirname "${BASH_SOURCE[0]}" )" rm -f ./node-env.nix -src="$(nix-build --expr '(import ../../../.. {}).fetchFromGitHub (builtins.fromJSON (builtins.readFile ./netlify-cli.json))')" +src="$(nix-build --expr '(import ../../../.. {}).fetchFromGitHub (lib.importJSON ./netlify-cli.json)')" echo $src node2nix \ --input $src/package.json \ diff --git a/pkgs/development/web/nodejs/nodejs.nix b/pkgs/development/web/nodejs/nodejs.nix index 7b88b0f8fd37..3f0f0e78e07a 100644 --- a/pkgs/development/web/nodejs/nodejs.nix +++ b/pkgs/development/web/nodejs/nodejs.nix @@ -1,5 +1,7 @@ { lib, stdenv, fetchurl, openssl, python, zlib, libuv, util-linux, http-parser , pkg-config, which +# for `.pkgs` attribute +, callPackage # Updater dependencies , writeScript, coreutils, gnugrep, jq, curl, common-updater-scripts, nix, runtimeShell , gnupg @@ -40,9 +42,7 @@ let (builtins.attrNames sharedLibDeps); extraConfigFlags = optionals (!enableNpm) [ "--without-npm" ]; -in - - stdenv.mkDerivation { + self = stdenv.mkDerivation { inherit version; name = "${baseName}-${version}"; @@ -83,6 +83,10 @@ in passthru.interpreterName = "nodejs"; + passthru.pkgs = callPackage ../../node-packages/default.nix { + nodejs = self; + }; + setupHook = ./setup-hook.sh; pos = builtins.unsafeGetAttrPos "version" args; @@ -147,4 +151,5 @@ in }; passthru.python = python; # to ensure nodeEnv uses the same version -} + }; +in self diff --git a/pkgs/games/bastet/default.nix b/pkgs/games/bastet/default.nix index 053eca57528b..0b9f41507303 100644 --- a/pkgs/games/bastet/default.nix +++ b/pkgs/games/bastet/default.nix @@ -18,6 +18,14 @@ stdenv.mkDerivation rec { url = "https://github.com/fph/bastet/commit/0e03f8d4d6bc6949cf1c447e632ce0d1b98c4be1.patch"; sha256 = "1475hisbm44jirsrhdlnddppsyn83xmvcx09gfkm9drcix05alzj"; }) + + # Fix pending upstream inclusion for ncurses-6.3: + # https://github.com/fph/bastet/pull/21 + (fetchpatch { + name = "ncurses-6.3.patch"; + url = "https://github.com/fph/bastet/commit/54a6d127351ea2c62f50efafe97c5b02e23e86a7.patch"; + sha256 = "14v95b0m16m6ycd82i3wpp81kbmj6qz029b1m5483dkk6mwz98iy"; + }) ]; installPhase = '' diff --git a/pkgs/games/ddnet/default.nix b/pkgs/games/ddnet/default.nix index 51a242a6cfdf..c639f31ae648 100644 --- a/pkgs/games/ddnet/default.nix +++ b/pkgs/games/ddnet/default.nix @@ -20,13 +20,13 @@ stdenv.mkDerivation rec { pname = "ddnet"; - version = "15.5.4"; + version = "15.6.2"; src = fetchFromGitHub { owner = "ddnet"; repo = pname; rev = version; - sha256 = "sha256-vJMYPaLK2CK+nbojLstXgxqIUaf7jNynpklFgtIpvGM="; + sha256 = "sha256-nWouBe1qptDHedrSw5KDuGYyT7Bvf3cfwMynAfQALVY="; }; nativeBuildInputs = [ cmake ninja pkg-config ]; diff --git a/pkgs/games/devilutionx/default.nix b/pkgs/games/devilutionx/default.nix index fa457b1f1bcc..7a6dc2808805 100644 --- a/pkgs/games/devilutionx/default.nix +++ b/pkgs/games/devilutionx/default.nix @@ -1,32 +1,87 @@ -{ lib, stdenv, fetchFromGitHub, cmake, SDL2, SDL2_mixer, SDL2_ttf, libsodium, pkg-config }: +{ lib +, stdenv +, fetchFromGitHub +, fetchpatch +, fetchurl +, fetchzip +, cmake +, pkg-config +, gettext +, SDL2 +, SDL2_image +, fmt +, libpng +, smpq +}: + +let + # TODO: submit a PR upstream to allow system copies of these libraries where possible + asio = fetchurl { + url = "https://github.com/diasurgical/asio/archive/ebeff99f539da23d27c2e8d4bdbc1ee011968644.tar.gz"; + sha256 = "0vhb4cig40mm0a98i74grpmfkcmby8zxg6vqa38dpryxpgvp5fw8"; + }; + + SDL_audiolib = fetchurl { + url = "https://github.com/realnc/SDL_audiolib/archive/aa79660eba4467a44f9dcaecf26b0f0a000abfd7.tar.gz"; + sha256 = "0z4rizncp6gqsy72b3709zc9fr915wgcwnlx1fhhy7mrczsly630"; + }; + + simpleini = fetchzip { + url = "https://github.com/brofield/simpleini/archive/7bca74f6535a37846162383e52071f380c99a43a.zip"; + sha256 = "07kf1jjbc9v04hsysa6v2wh1m9csf5qz0b1wmlkf9sj00kf47zj7"; + }; +in stdenv.mkDerivation rec { pname = "devilutionx"; - version = "1.2.1"; + version = "1.3.0"; src = fetchFromGitHub { owner = "diasurgical"; repo = "devilutionX"; rev = version; - sha256 = "sha256-PgYlNO1p78d0uiL474bDJOL++SxJfeBLK65czdaylHU="; + sha256 = "0acrkqi0pr3cbr5i1a1vfrnxv1n3xmql5d86bm2gywvpdb94xads"; }; + patches = [ + # allow building with system SDL2_image instead of vendored version + # this patch can be removed on the next release of devilutionx + # see https://github.com/diasurgical/devilutionX/pull/3386 + (fetchpatch { + url = "https://github.com/diasurgical/devilutionX/commit/41ff03e94c02477bffb2d62764e8624c0e06854d.patch"; + sha256 = "1lrnb9d0dcdyd78rix5rl4p8kkwbnl91llr9fgb86ysm3q58qkvj"; + }) + ]; + postPatch = '' substituteInPlace Source/init.cpp --replace "/usr/share/diasurgical/devilutionx/" "${placeholder "out"}/share/diasurgical/devilutionx/" - ''; - NIX_CFLAGS_COMPILE = [ - "-I${SDL2_ttf}/include/SDL2" - ''-DTTF_FONT_PATH="${placeholder "out"}/share/fonts/truetype/CharisSILB.ttf"'' - ]; + # download dependencies ahead of time + substituteInPlace 3rdParty/asio/CMakeLists.txt --replace "https://github.com/diasurgical/asio/archive/ebeff99f539da23d27c2e8d4bdbc1ee011968644.tar.gz" "${asio}" + substituteInPlace 3rdParty/SDL_audiolib/CMakeLists.txt --replace "https://github.com/realnc/SDL_audiolib/archive/aa79660eba4467a44f9dcaecf26b0f0a000abfd7.tar.gz" "${SDL_audiolib}" + substituteInPlace 3rdParty/simpleini/CMakeLists.txt --replace "https://github.com/brofield/simpleini/archive/7bca74f6535a37846162383e52071f380c99a43a.zip" "${simpleini}" + ''; cmakeFlags = [ "-DBINARY_RELEASE=ON" "-DVERSION_NUM=${version}" + "-DPACKET_ENCRYPTION=OFF" # FIXME: build with libsodium + "-DDISABLE_ZERO_TIER=ON" # FIXME: build with libzt ]; - nativeBuildInputs = [ pkg-config cmake ]; - buildInputs = [ libsodium SDL2 SDL2_mixer SDL2_ttf ]; + nativeBuildInputs = [ + cmake + pkg-config + gettext + smpq # used to build devilutionx.mpq + ]; + + buildInputs = [ + fmt + libpng + SDL2 + SDL2_image + ]; installPhase = '' runHook preInstall @@ -36,10 +91,10 @@ stdenv.mkDerivation rec { mv devilutionx.app $out/Applications '' else '' install -Dm755 -t $out/bin devilutionx - install -Dt $out/share/fonts/truetype ../Packaging/resources/CharisSILB.ttf - install -Dt $out/share/diasurgical/devilutionx ../Packaging/resources/devilutionx.mpq - - # TODO: icons and .desktop (see Packages/{debian,fedora}/*) + install -Dm755 -t $out/share/diasurgical/devilutionx devilutionx.mpq + install -Dm755 -t $out/share/applications ../Packaging/nix/devilutionx-hellfire.desktop ../Packaging/nix/devilutionx.desktop + install -Dm755 ../Packaging/resources/icon.png $out/share/icons/hicolor/512x512/apps/devilution.png + install -Dm755 ../Packaging/resources/hellfire.png $out/share/icons/hicolor/512x512/apps/devilution-hellfire.png '') + '' runHook postInstall @@ -50,7 +105,7 @@ stdenv.mkDerivation rec { description = "Diablo build for modern operating systems"; longDescription = "In order to play this game a copy of diabdat.mpq is required. Place a copy of diabdat.mpq in ~/.local/share/diasurgical/devilution before executing the game."; license = licenses.unlicense; - maintainers = [ maintainers.karolchmist ]; + maintainers = with maintainers; [ karolchmist aanderse ]; platforms = platforms.linux ++ platforms.windows; }; } diff --git a/pkgs/games/domination/default.nix b/pkgs/games/domination/default.nix index 2fc4f8d36cb4..0dde8ab16413 100644 --- a/pkgs/games/domination/default.nix +++ b/pkgs/games/domination/default.nix @@ -6,6 +6,7 @@ , ant , makeWrapper , makeDesktopItem +, nixosTests }: let @@ -26,7 +27,7 @@ let in stdenv.mkDerivation { pname = "domination"; - version = "1.2.3"; + version = "1.2.4"; # The .zip releases do not contain the build.xml file src = fetchsvn { @@ -34,8 +35,8 @@ in stdenv.mkDerivation { # There are no tags in the repository. # Look for commits like "new version x.y.z info on website" # or "website update for x.y.z". - rev = "1964"; - sha256 = "0718gns8d69a1dfq3ywc9kddl1khnrmxqyal7brckbjgay8dq42f"; + rev = "2109"; + sha256 = "sha256-awTaEkv0zUXgrKVKuFzi5sgHgrfiNmAFMODO5U0DL6I="; }; nativeBuildInputs = [ @@ -44,7 +45,10 @@ in stdenv.mkDerivation { makeWrapper ]; - buildPhase = "ant"; + buildPhase = '' + cd swingUI + ant + ''; installPhase = '' # Remove unnecessary files and launchers (they'd need to be wrapped anyway) @@ -76,6 +80,10 @@ in stdenv.mkDerivation { install -Dm644 build/game/resources/icon.png $out/share/pixmaps/domination.png ''; + passthru.tests = { + domination-starts = nixosTests.domination; + }; + meta = with lib; { homepage = "http://domination.sourceforge.net/"; downloadPage = "http://domination.sourceforge.net/download.shtml"; diff --git a/pkgs/games/dwarf-fortress/default.nix b/pkgs/games/dwarf-fortress/default.nix index 7fd3dc61dd42..4f9688c844ff 100644 --- a/pkgs/games/dwarf-fortress/default.nix +++ b/pkgs/games/dwarf-fortress/default.nix @@ -95,7 +95,7 @@ let (lib.attrNames self.df-hashes)); self = rec { - df-hashes = builtins.fromJSON (builtins.readFile ./game.json); + df-hashes = lib.importJSON ./game.json; # Aliases for the latest Dwarf Fortress and the selected Therapist install dwarf-fortress = getAttr (versionToName latestVersion) df-games; diff --git a/pkgs/games/factorio/versions.json b/pkgs/games/factorio/versions.json index 5d985854229d..0c159d6773ec 100644 --- a/pkgs/games/factorio/versions.json +++ b/pkgs/games/factorio/versions.json @@ -10,22 +10,22 @@ "version": "1.1.45" }, "stable": { - "name": "factorio_alpha_x64-1.1.42.tar.xz", + "name": "factorio_alpha_x64-1.1.46.tar.xz", "needsAuth": true, - "sha256": "08h2pxzsk7sigjqnqm1jxya3i9i5g2mgl378gmbp2jcy2mnn4dvm", + "sha256": "sha256-ikvtD5X0WRBVMsByXLXC5jtVZeIFQIsWlZ9vzomYdGU=", "tarDirectory": "x64", - "url": "https://factorio.com/get-download/1.1.42/alpha/linux64", - "version": "1.1.42" + "url": "https://factorio.com/get-download/1.1.46/alpha/linux64", + "version": "1.1.46" } }, "demo": { "stable": { - "name": "factorio_demo_x64-1.1.42.tar.xz", + "name": "factorio_demo_x64-1.1.46.tar.xz", "needsAuth": false, - "sha256": "155m1ijdbc7szhpdw8f8g82ysd7av9zb6llqq4z96nn834px9m2d", + "sha256": "sha256-CJVk1b3GXqs8xV2a7Pa6p6JxEOy86xAnRfz6kphCDHk=", "tarDirectory": "x64", - "url": "https://factorio.com/get-download/1.1.42/demo/linux64", - "version": "1.1.42" + "url": "https://factorio.com/get-download/1.1.46/demo/linux64", + "version": "1.1.46" } }, "headless": { @@ -38,12 +38,12 @@ "version": "1.1.45" }, "stable": { - "name": "factorio_headless_x64-1.1.42.tar.xz", + "name": "factorio_headless_x64-1.1.46.tar.xz", "needsAuth": false, - "sha256": "1l217fcjcwfi0g5dilsi703cl0wyxsqdqn422hwdbp2ql839k422", + "sha256": "sha256-xJ/NBwQR6tdwoAz/1RZmcGwutqETWgzyAlpg5ls2ba0=", "tarDirectory": "x64", - "url": "https://factorio.com/get-download/1.1.42/headless/linux64", - "version": "1.1.42" + "url": "https://factorio.com/get-download/1.1.46/headless/linux64", + "version": "1.1.46" } } } diff --git a/pkgs/games/fheroes2/default.nix b/pkgs/games/fheroes2/default.nix index 799557c4c149..e7b065d6741f 100644 --- a/pkgs/games/fheroes2/default.nix +++ b/pkgs/games/fheroes2/default.nix @@ -4,13 +4,13 @@ stdenv.mkDerivation rec { pname = "fheroes2"; - version = "0.9.7"; + version = "0.9.9"; src = fetchFromGitHub { owner = "ihhub"; repo = "fheroes2"; rev = version; - sha256 = "sha256-1hnkcsz+uGK3knWEryOvltBTmBm+zl0ym9F1jxSCf2w="; + sha256 = "sha256-vm9/jHRrG7qSP4GKksUrcK0qC3BW9LXlOnH4/pRyEww="; }; buildInputs = [ gettext libpng SDL2 SDL2_image SDL2_mixer SDL2_ttf zlib ]; diff --git a/pkgs/games/flightgear/default.nix b/pkgs/games/flightgear/default.nix index bfbb705da387..6f4a57587de9 100644 --- a/pkgs/games/flightgear/default.nix +++ b/pkgs/games/flightgear/default.nix @@ -6,7 +6,7 @@ }: let - version = "2020.3.8"; + version = "2020.3.11"; shortVersion = builtins.substring 0 6 version; data = stdenv.mkDerivation rec { pname = "flightgear-data"; @@ -14,7 +14,7 @@ let src = fetchurl { url = "mirror://sourceforge/flightgear/release-${shortVersion}/FlightGear-${version}-data.txz"; - sha256 = "sha256-/KFumHRkmRvsU/L1i11jG/KbqobnOEP7l4lyPMKHycA="; + sha256 = "sha256-Ej8VGywPQiDw3VXodcpXpOw4qU9x+MBMWMrqwHfitVg="; }; dontUnpack = true; @@ -32,7 +32,7 @@ stdenv.mkDerivation rec { src = fetchurl { url = "mirror://sourceforge/flightgear/release-${shortVersion}/${pname}-${version}.tar.bz2"; - sha256 = "XXDqhZ9nR+FwQ3LauZe8iGxOjlyDXDrEtj61BQGVDYc="; + sha256 = "sha256-/icGx3B+pzq8URR3PeRfKYYasPj1NWVq8EKO0EnKSpc="; }; # Of all the files in the source and data archives, there doesn't seem to be diff --git a/pkgs/games/grapejuice/default.nix b/pkgs/games/grapejuice/default.nix index 4c360b2040ad..931de10c18f4 100644 --- a/pkgs/games/grapejuice/default.nix +++ b/pkgs/games/grapejuice/default.nix @@ -49,7 +49,7 @@ python3Packages.buildPythonApplication rec { makeWrapperArgs = [ "\${gappsWrapperArgs[@]}" - "--prefix PATH : ${lib.makeBinPath [ xdg-user-dirs xdg-utils wine (winetricks.override { wine = wine; }) ]}" + "--prefix PATH : ${lib.makeBinPath [ xdg-user-dirs xdg-utils wine winetricks ]}" ]; postPatch = '' diff --git a/pkgs/games/mindustry/default.nix b/pkgs/games/mindustry/default.nix index 732079238395..2dbf32e82575 100644 --- a/pkgs/games/mindustry/default.nix +++ b/pkgs/games/mindustry/default.nix @@ -88,7 +88,7 @@ let ''; # The default one still uses jdk8 (#89731) - gradle_6 = (gradleGen.override (old: { java = jdk; })).gradle_6_8; + gradle_6 = (gradleGen.override (old: { java = jdk; })).gradle_6_9; # fake build to pre-download deps into fixed-output derivation deps = stdenv.mkDerivation { diff --git a/pkgs/games/nudoku/default.nix b/pkgs/games/nudoku/default.nix index aaa6d3248094..d3e3d039d986 100644 --- a/pkgs/games/nudoku/default.nix +++ b/pkgs/games/nudoku/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchFromGitHub, autoreconfHook, pkg-config, gettext, ncurses }: +{ lib, stdenv, fetchFromGitHub, fetchpatch, autoreconfHook, pkg-config, gettext, ncurses }: stdenv.mkDerivation rec { pname = "nudoku"; @@ -11,6 +11,15 @@ stdenv.mkDerivation rec { sha256 = "12v00z3p0ymi8f3w4b4bgl4c76irawn3kmd147r0ap6s9ssx2q6m"; }; + patches = [ + # Pull upstream fix for ncurses-6.3 + (fetchpatch { + name = "ncurses-6.3.patch"; + url = "https://github.com/jubalh/nudoku/commit/93899a0fd72e04b9f257e5f54af53466106b5959.patch"; + sha256 = "1h3za0dnx8fk3vshql5mhcici8aw8j0vr7ra81p3r1rii4c479lm"; + }) + ]; + # Allow gettext 0.20 postPatch = '' substituteInPlace configure.ac --replace 0.19 0.20 diff --git a/pkgs/games/opendungeons/cmakepaths.patch b/pkgs/games/opendungeons/cmakepaths.patch index bcffd7a22bcf..a3e7ba7d6c8d 100644 --- a/pkgs/games/opendungeons/cmakepaths.patch +++ b/pkgs/games/opendungeons/cmakepaths.patch @@ -1,13 +1,16 @@ ---- ../CMakeLists.txt -+++ ../CMakeLists.txt -@@ -31,12 +31,12 @@ - set(OD_PLUGINS_CFG_PATH ".") +diff --git a/CMakeLists.txt b/CMakeLists.txt +index f8ff3c28..b57ee337 100644 +--- a/CMakeLists.txt ++++ b/CMakeLists.txt +@@ -30,13 +30,13 @@ if(WIN32) + set(OD_BIN_PATH ${CMAKE_INSTALL_PREFIX}) else() # Set binary and data install locations if we want to use the installer - set(OD_BIN_PATH ${CMAKE_INSTALL_PREFIX}/games CACHE PATH "Absolute path to the game binary directory") + set(OD_BIN_PATH ${CMAKE_INSTALL_PREFIX}/bin CACHE PATH "Absolute path to the game binary directory") set(OD_DATA_PATH ${CMAKE_INSTALL_PREFIX}/share/games/${PROJECT_NAME} CACHE PATH "Absolute path to the game data directory") set(OD_SHARE_PATH ${CMAKE_INSTALL_PREFIX}/share CACHE PATH "Absolute path to the shared data directory (desktop file, icons, etc.)") + set(OD_MAN_PATH ${OD_SHARE_PATH}/man CACHE PATH "Absolute path to the manpages directory") # Set the plugins.cfg file path to a common but architecture-dependent location. # Because the plugins.cfg Ogre plugins path path may vary depending on the architecture used. - set(OD_PLUGINS_CFG_PATH /etc/${PROJECT_NAME} CACHE PATH "Absolute path to the Ogre plugins.cfg file") diff --git a/pkgs/games/opendungeons/default.nix b/pkgs/games/opendungeons/default.nix index d18682b8807f..734be8e999ae 100644 --- a/pkgs/games/opendungeons/default.nix +++ b/pkgs/games/opendungeons/default.nix @@ -2,20 +2,19 @@ stdenv.mkDerivation rec { pname = "opendungeons"; - version = "0.7.1"; + version = "unstable-2021-11-06"; src = fetchFromGitHub { owner = "OpenDungeons"; repo = "OpenDungeons"; - rev = version; - sha256 = "0nipb2h0gn628yxlahjgnfhmpfqa19mjdbj3aqabimdfqds9pryh"; + rev = "c180ed1864eab5fbe847d1dd5c5c936c4e45444e"; + sha256 = "0xf7gkpy8ll1h59wyaljf0hr8prg7p4ixz80mxqwcnm9cglpgn63"; }; patches = [ ./cmakepaths.patch ]; nativeBuildInputs = [ cmake pkg-config ]; buildInputs = [ ogre cegui boost sfml openal ois ]; - NIX_LDFLAGS = "-lpthread"; meta = with lib; { description = "An open source, real time strategy game sharing game elements with the Dungeon Keeper series and Evil Genius"; diff --git a/pkgs/games/openmw/default.nix b/pkgs/games/openmw/default.nix index cfde63ac7264..edc8147a2b77 100644 --- a/pkgs/games/openmw/default.nix +++ b/pkgs/games/openmw/default.nix @@ -13,29 +13,46 @@ , unshield , openal , libXt +, lz4 +, recastnavigation }: let - openscenegraph_ = openscenegraph.overrideDerivation (self: { + openscenegraph_openmw = (openscenegraph.override { colladaSupport = true; }) + .overrideDerivation (self: { + src = fetchFromGitHub { + owner = "OpenMW"; + repo = "osg"; + rev = "bbe61c3bc510a4f5bb4aea21cce506519c2d24e6"; + sha256 = "sha256-t3smLqstp7wWfi9HXJoBCek+3acqt/ySBYF8RJOG6Mo="; + }; + }); + + bullet_openmw = bullet.overrideDerivation (old: rec { + version = "3.17"; src = fetchFromGitHub { - owner = "OpenMW"; - repo = "osg"; - # commit does not exist on any branch on the target repository - rev = "1556cd7966ebc1c80b6626988d2b25fb43a744cf"; - sha256 = "0d74hijzmj82nx3jkv5qmr3pkgvplra0b8fbjx1y3vmzxamb0axd"; + owner = "bulletphysics"; + repo = "bullet3"; + rev = version; + sha256 = "sha256-uQ4X8F8nmagbcFh0KexrmnhHIXFSB3A1CCnjPVeHL3Q="; }; + patches = []; + cmakeFlags = (old.cmakeFlags or []) ++ [ + "-DUSE_DOUBLE_PRECISION=ON" + "-DBULLET2_MULTITHREADING=ON" + ]; }); in mkDerivation rec { - version = "0.46.0"; pname = "openmw"; + version = "0.47.0"; src = fetchFromGitHub { owner = "OpenMW"; repo = "openmw"; rev = "${pname}-${version}"; - sha256 = "0rm32zsmxvr6b0jjihfj543skhicbw5kg6shjx312clhlm035w2x"; + sha256 = "sha256-Xq9hDUTCQr79Zzjk0CsiXclVTHK6nrSowukIQqVdrKY="; }; nativeBuildInputs = [ cmake pkg-config wrapQtAppsHook ]; @@ -43,26 +60,28 @@ mkDerivation rec { buildInputs = [ SDL2 boost - bullet + bullet_openmw ffmpeg libXt mygui openal - openscenegraph_ + openscenegraph_openmw unshield + lz4 + recastnavigation ]; cmakeFlags = [ - "-DDESIRED_QT_VERSION:INT=5" # as of 0.46, openmw is broken with GLVND "-DOpenGL_GL_PREFERENCE=LEGACY" + "-DOPENMW_USE_SYSTEM_RECASTNAVIGATION=1" ]; meta = with lib; { description = "An unofficial open source engine reimplementation of the game Morrowind"; - homepage = "http://openmw.org"; + homepage = "https://openmw.org"; license = licenses.gpl3Plus; - maintainers = with maintainers; [ abbradar ]; + maintainers = with maintainers; [ abbradar marius851000 ]; platforms = platforms.linux; }; } diff --git a/pkgs/games/openmw/tes3mp.nix b/pkgs/games/openmw/tes3mp.nix index 72b698ceb730..37ad603d7cf5 100644 --- a/pkgs/games/openmw/tes3mp.nix +++ b/pkgs/games/openmw/tes3mp.nix @@ -9,6 +9,7 @@ , symlinkJoin , mygui , crudini +, bullet }: # revisions are taken from https://github.com/GrimKriegor/TES3MP-deploy @@ -70,7 +71,8 @@ let nativeBuildInputs = oldAttrs.nativeBuildInputs ++ [ makeWrapper ]; - buildInputs = oldAttrs.buildInputs ++ [ luajit ]; + buildInputs = (builtins.map (x: if x.pname or "" == "bullet" then bullet else x) oldAttrs.buildInputs) + ++ [ luajit ]; cmakeFlags = oldAttrs.cmakeFlags ++ [ "-DBUILD_OPENCS=OFF" @@ -79,6 +81,11 @@ let "-DRakNet_LIBRARY_DEBUG=${raknet}/lib/libRakNetLibStatic.a" ]; + prePatch = '' + substituteInPlace components/process/processinvoker.cpp \ + --replace "\"./\"" "\"$out/bin/\"" + ''; + # https://github.com/TES3MP/openmw-tes3mp/issues/552 patches = [ ./tes3mp.patch ]; diff --git a/pkgs/games/openrw/default.nix b/pkgs/games/openrw/default.nix index 4064023fafd3..f1bcab2895fb 100644 --- a/pkgs/games/openrw/default.nix +++ b/pkgs/games/openrw/default.nix @@ -1,21 +1,37 @@ -{ lib, stdenv, fetchgit, cmake, sfml, libGLU, libGL, bullet, glm, libmad, xlibsWrapper, openal -, SDL2, boost, ffmpeg_3, Cocoa, OpenAL }: +{ lib +, stdenv +, fetchFromGitHub +, cmake +, sfml +, libGLU +, libGL +, bullet +, glm +, libmad +, xlibsWrapper +, openal +, SDL2 +, boost +, ffmpeg +, Cocoa +, OpenAL }: stdenv.mkDerivation { - version = "2019-10-26"; + version = "unstable-2021-10-14"; pname = "openrw"; - src = fetchgit { - url = "https://github.com/rwengine/openrw"; - rev = "51b7264744d1aaa20de3b86a7a4e92a9930881ba"; - sha256 = "04s088wfxkfmb4dxdvad611yxj8smxlnxdm5xy81zldfzybvx8dg"; + src = fetchFromGitHub { + owner = "rwengine"; + repo = "openrw"; + rev = "0f83c16f6518c427a4f156497c3edc843610c402"; + sha256 = "0i6nx9g0xb8sziak5swi8636fszcjjx8n2jwgz570izw2fl698ff"; fetchSubmodules = true; }; nativeBuildInputs = [ cmake ]; buildInputs = [ - sfml libGLU libGL bullet glm libmad xlibsWrapper openal SDL2 boost ffmpeg_3 + sfml libGLU libGL bullet glm libmad xlibsWrapper openal SDL2 boost ffmpeg ] ++ lib.optionals stdenv.isDarwin [ OpenAL Cocoa ]; meta = with lib; { diff --git a/pkgs/games/openttd/default.nix b/pkgs/games/openttd/default.nix index 8953ff94e16c..3219ec50760d 100644 --- a/pkgs/games/openttd/default.nix +++ b/pkgs/games/openttd/default.nix @@ -11,8 +11,8 @@ let }; opensfx = fetchzip { - url = "https://cdn.openttd.org/opensfx-releases/1.0.2/opensfx-1.0.2-all.zip"; - sha256 = "sha256-yRCb49/k8uUUAe9VzUG0LQaBDFP7n9QdrLSJDIthdbA="; + url = "https://cdn.openttd.org/opensfx-releases/1.0.3/opensfx-1.0.3-all.zip"; + sha256 = "sha256-QmfXizrRTu/fUcVOY7tCndv4t4BVW+fb0yUi8LgSYzM="; }; openmsx = fetchzip { @@ -29,11 +29,11 @@ let in stdenv.mkDerivation rec { pname = "openttd"; - version = "12.0"; + version = "12.1"; src = fetchurl { url = "https://cdn.openttd.org/openttd-releases/${version}/${pname}-${version}-source.tar.xz"; - sha256 = "sha256-u6D9OADfA3AlnmQtJR82LHwAtHii41Mfa6f4TBwrMtw="; + sha256 = "sha256-JYv1uZgwEIkLoQUYtQa8SrgPfAjM7FlJfpulWkqj5+M="; }; nativeBuildInputs = [ cmake makeWrapper ]; diff --git a/pkgs/games/openttd/jgrpp.nix b/pkgs/games/openttd/jgrpp.nix index 280665389598..19f50ab780e3 100644 --- a/pkgs/games/openttd/jgrpp.nix +++ b/pkgs/games/openttd/jgrpp.nix @@ -2,12 +2,12 @@ openttd.overrideAttrs (oldAttrs: rec { pname = "openttd-jgrpp"; - version = "0.43.1"; + version = "0.44.0"; src = fetchFromGitHub rec { owner = "JGRennison"; repo = "OpenTTD-patches"; rev = "jgrpp-${version}"; - sha256 = "sha256-nCZ3UN2BdpDGbW0CKX/ijxlA3cQ7FPflajQ5TBM1Hdk="; + sha256 = "sha256-/kqwMZGXUYWlCnjk6uShJ5UARtvBSZWPExVel5o4xA8="; }; }) diff --git a/pkgs/games/osu-lazer/default.nix b/pkgs/games/osu-lazer/default.nix index bcf1c24ce1f2..423ac7b1111d 100644 --- a/pkgs/games/osu-lazer/default.nix +++ b/pkgs/games/osu-lazer/default.nix @@ -16,13 +16,13 @@ let in stdenv.mkDerivation rec { pname = "osu-lazer"; - version = "2021.1028.0"; + version = "2021.1105.0"; src = fetchFromGitHub { owner = "ppy"; repo = "osu"; rev = version; - sha256 = "QXdhdZ0M09Fg7owEQG2BACZYeZzBgCsg7MtS7NIU2Z4="; + sha256 = "0dhxbpqm49691hrxj0in9gb22snbb7svdrvp9664fkvvp3m3cywb"; }; nativeBuildInputs = [ diff --git a/pkgs/games/osu-lazer/deps.nix b/pkgs/games/osu-lazer/deps.nix index 04ac6b28c772..42b92cc90582 100644 --- a/pkgs/games/osu-lazer/deps.nix +++ b/pkgs/games/osu-lazer/deps.nix @@ -7,9 +7,6 @@ (fetchNuGet { name = "Fody"; version = "6.5.3"; sha256 = "14yj3xj4jh2ayl8jsyypxv9af0xbw30946kn14m0bfmlyl027wkp"; }) (fetchNuGet { name = "HidSharpCore"; version = "1.2.1.1"; sha256 = "1zkndglmz0s8rblfhnqcvv90rkq2i7lf4bc380g7z8h1avf2ikll"; }) (fetchNuGet { name = "HtmlAgilityPack"; version = "1.11.37"; sha256 = "1q0kkw2rhvxi67hqv18ziv2dvmhi7f68745gcs1253mwv5da4vy6"; }) - (fetchNuGet { name = "Humanizer"; version = "2.11.10"; sha256 = "057pqzvdxsbpnnc5f1xkqg7j3ywp68ggia3w74fgqp0158dm6rdk"; }) - (fetchNuGet { name = "Humanizer.Core"; version = "2.11.10"; sha256 = "0z7kmd5rh1sb6izq0vssk6c2p63n00xglk45s7ga9z18z9aaskxv"; }) - (fetchNuGet { name = "Humanizer.Core"; version = "2.2.0"; sha256 = "08mzg65y9d3zvq16rsmpapcdan71ggq2mpks6k777h3wlm2sh3p5"; }) (fetchNuGet { name = "Humanizer.Core.af"; version = "2.11.10"; sha256 = "18fiixfvjwn8m1i8z2cz4aqykzylvfdqmmpwc2zcd8sr1a2xm86z"; }) (fetchNuGet { name = "Humanizer.Core.ar"; version = "2.11.10"; sha256 = "009fpm4jd325izm82ipipsvlwd31824gvskda68bdwi4yqmycz4p"; }) (fetchNuGet { name = "Humanizer.Core.az"; version = "2.11.10"; sha256 = "144b9diwprabxwgi5a98k5iy95ajq4p7356phdqi2lhzwbz7b6a9"; }) @@ -22,8 +19,8 @@ (fetchNuGet { name = "Humanizer.Core.es"; version = "2.11.10"; sha256 = "07bw07qy8nyzlgxl7l2lxv9f78qmkfppgzx7iyq5ikrcnpvc7i9q"; }) (fetchNuGet { name = "Humanizer.Core.fa"; version = "2.11.10"; sha256 = "00d4hc1pfmhfkc5wmx9p7i00lgi4r0k6wfcns9kl1syjxv3bs5f2"; }) (fetchNuGet { name = "Humanizer.Core.fi-FI"; version = "2.11.10"; sha256 = "0z4is7pl5jpi4pfdvd2zvx5mp00bj26d9l9ksqyc0liax8nfzyik"; }) - (fetchNuGet { name = "Humanizer.Core.fr"; version = "2.11.10"; sha256 = "0sybpg6kbbhrnk7gxcdk7ppan89lsfqsdssrg4i1dm8w48wgicap"; }) (fetchNuGet { name = "Humanizer.Core.fr-BE"; version = "2.11.10"; sha256 = "1s25c86nl9wpsn6fydzwv4rfmdx5sm0vgyd7xhw5344k20gazvhv"; }) + (fetchNuGet { name = "Humanizer.Core.fr"; version = "2.11.10"; sha256 = "0sybpg6kbbhrnk7gxcdk7ppan89lsfqsdssrg4i1dm8w48wgicap"; }) (fetchNuGet { name = "Humanizer.Core.he"; version = "2.11.10"; sha256 = "1nx61qkjd6p9r36dmnm4942khyv35fpdqmb2w69gz6463g4d7z29"; }) (fetchNuGet { name = "Humanizer.Core.hr"; version = "2.11.10"; sha256 = "02jhcyj72prkqsjxyilv04drm0bknqjh2r893jlbsfi9vjg2zay3"; }) (fetchNuGet { name = "Humanizer.Core.hu"; version = "2.11.10"; sha256 = "0yb6ly4s1wdyaf96h2dvifqyb575aid6irwl3qx8gcvrs0xpcxdp"; }) @@ -36,8 +33,8 @@ (fetchNuGet { name = "Humanizer.Core.lv"; version = "2.11.10"; sha256 = "0czxx4b9g0w7agykdl82wds09zasa9y58dmgjm925amlfz4wkyzs"; }) (fetchNuGet { name = "Humanizer.Core.ms-MY"; version = "2.11.10"; sha256 = "0kix95nbw94fx0dziyz80y59i7ii7d21b63f7f94niarljjq36i3"; }) (fetchNuGet { name = "Humanizer.Core.mt"; version = "2.11.10"; sha256 = "1rwy6m22pq65gxn86xlr9lv818fp5kb0wz98zxxfljc2iviw1f4p"; }) - (fetchNuGet { name = "Humanizer.Core.nb"; version = "2.11.10"; sha256 = "0ra2cl0avvv4sylha7z76jxnb4pdiqfbpr5m477snr04dsjxd9q9"; }) (fetchNuGet { name = "Humanizer.Core.nb-NO"; version = "2.11.10"; sha256 = "1qszib03pvmjkrg8za7jjd2vzrs9p4fn2rmy82abnzldkhvifipq"; }) + (fetchNuGet { name = "Humanizer.Core.nb"; version = "2.11.10"; sha256 = "0ra2cl0avvv4sylha7z76jxnb4pdiqfbpr5m477snr04dsjxd9q9"; }) (fetchNuGet { name = "Humanizer.Core.nl"; version = "2.11.10"; sha256 = "1i9bvy0i2yyasl9mgxiiwrkmfpm2c53d3wwdp9270r6120sxyy63"; }) (fetchNuGet { name = "Humanizer.Core.pl"; version = "2.11.10"; sha256 = "0kggh4wgcic7wzgxy548n6w61schss2ccf9kz8alqshfi42xifby"; }) (fetchNuGet { name = "Humanizer.Core.pt"; version = "2.11.10"; sha256 = "09j90s8x1lpvhfiy3syfnj8slkgcacf3xjy3pnkgxa6g4mi4f4bd"; }) @@ -45,8 +42,8 @@ (fetchNuGet { name = "Humanizer.Core.ru"; version = "2.11.10"; sha256 = "13mmlh0ibxfyc85xrz3vx4mcg56mkzqql184iwdryq94p0g5ahil"; }) (fetchNuGet { name = "Humanizer.Core.sk"; version = "2.11.10"; sha256 = "04ja06y5jaz1jwkwn117wx9cib04gpbi0vysn58a8sd5jrxmxai5"; }) (fetchNuGet { name = "Humanizer.Core.sl"; version = "2.11.10"; sha256 = "05hxk9v3a7fn7s4g9jp5zxk2z6a33b9fkavyb1hjqnl2i37q2wja"; }) - (fetchNuGet { name = "Humanizer.Core.sr"; version = "2.11.10"; sha256 = "0x6l2msimrx72iywa1g0rqklgy209sdwg0r77i2lz0s1rvk5klm5"; }) (fetchNuGet { name = "Humanizer.Core.sr-Latn"; version = "2.11.10"; sha256 = "01hdyn7mmbyy7f3aglawgnsj3nblcdpqjgzdcvniy73l536mira0"; }) + (fetchNuGet { name = "Humanizer.Core.sr"; version = "2.11.10"; sha256 = "0x6l2msimrx72iywa1g0rqklgy209sdwg0r77i2lz0s1rvk5klm5"; }) (fetchNuGet { name = "Humanizer.Core.sv"; version = "2.11.10"; sha256 = "0cbgchivw3d5ndib1zmgzmnymhyvfh9g9f0hijc860g5vaa9fkvh"; }) (fetchNuGet { name = "Humanizer.Core.th-TH"; version = "2.11.10"; sha256 = "1v7f9x3b04iwhz9lb3ir8az8128nvcw1gi4park5zh3fg0f3mni0"; }) (fetchNuGet { name = "Humanizer.Core.tr"; version = "2.11.10"; sha256 = "02c4ky0dskxkdrkc7vy8yzmvwjr1wqll1kzx0k21afhlx8xynjd4"; }) @@ -57,35 +54,38 @@ (fetchNuGet { name = "Humanizer.Core.zh-CN"; version = "2.11.10"; sha256 = "01dy5kf6ai8id77px92ji4kcxjc8haj39ivv55xy1afcg3qiy7mh"; }) (fetchNuGet { name = "Humanizer.Core.zh-Hans"; version = "2.11.10"; sha256 = "16gcxgw2g6gck3nc2hxzlkbsg7wkfaqsjl87kasibxxh47zdqqv2"; }) (fetchNuGet { name = "Humanizer.Core.zh-Hant"; version = "2.11.10"; sha256 = "1rjg2xvkwjjw3c7z9mdjjvbnl9lcvvhh4fr7l61rla2ynzdk46cj"; }) - (fetchNuGet { name = "JetBrains.Annotations"; version = "2021.2.0"; sha256 = "0krvmg2h5ibh6mzs9yn7c8cdxgvr5hm7l884i49hlhnc1aiy5m1n"; }) - (fetchNuGet { name = "ManagedBass"; version = "3.0.0"; sha256 = "1yh1s36w465z8gcj4xs6q048g63z7m3nyfy1vvw1lgh7k6hqqgma"; }) + (fetchNuGet { name = "Humanizer.Core"; version = "2.11.10"; sha256 = "0z7kmd5rh1sb6izq0vssk6c2p63n00xglk45s7ga9z18z9aaskxv"; }) + (fetchNuGet { name = "Humanizer.Core"; version = "2.2.0"; sha256 = "08mzg65y9d3zvq16rsmpapcdan71ggq2mpks6k777h3wlm2sh3p5"; }) + (fetchNuGet { name = "Humanizer"; version = "2.11.10"; sha256 = "057pqzvdxsbpnnc5f1xkqg7j3ywp68ggia3w74fgqp0158dm6rdk"; }) + (fetchNuGet { name = "JetBrains.Annotations"; version = "2021.3.0"; sha256 = "01ssylllbwpana2w3iybi533zlvcsbhzjc8kr0g4kg307kjbfn8v"; }) + (fetchNuGet { name = "managed-midi"; version = "1.9.14"; sha256 = "025jh146zy98699y4civ7nxlkx312lwkl4sr8pha626q7q1kg89h"; }) (fetchNuGet { name = "ManagedBass.Fx"; version = "3.0.0"; sha256 = "0sck1wmjlcy8q941bamk1i0k4yrklyilsgg6c832xdh96sdc049s"; }) (fetchNuGet { name = "ManagedBass.Mix"; version = "3.0.0"; sha256 = "0brnm0ry96b81hgffbaj52s53bsn9c8cx4q24j0whsvmcqqxhs4v"; }) - (fetchNuGet { name = "managed-midi"; version = "1.9.14"; sha256 = "025jh146zy98699y4civ7nxlkx312lwkl4sr8pha626q7q1kg89h"; }) + (fetchNuGet { name = "ManagedBass"; version = "3.0.0"; sha256 = "1yh1s36w465z8gcj4xs6q048g63z7m3nyfy1vvw1lgh7k6hqqgma"; }) (fetchNuGet { name = "Markdig"; version = "0.26.0"; sha256 = "1pg0yica8h1c2kx10pqzc5iclmlfll5wbw1bxa8l251w1qnfglv2"; }) - (fetchNuGet { name = "MessagePack"; version = "2.3.85"; sha256 = "0n7kv4i6knhv1dd35cv45sfpidsiy9albfdmbrdschykd1mzxmiy"; }) (fetchNuGet { name = "MessagePack.Annotations"; version = "2.3.85"; sha256 = "0axjgy9r533bw00lflnc6acjyza76mf2x1nn6fw7qacvak9rqxm3"; }) + (fetchNuGet { name = "MessagePack"; version = "2.3.85"; sha256 = "0n7kv4i6knhv1dd35cv45sfpidsiy9albfdmbrdschykd1mzxmiy"; }) (fetchNuGet { name = "Microsoft.AspNetCore.App.Runtime.linux-x64"; version = "5.0.10"; sha256 = "1zlcdqscbgqz5yqfgn21l711ybplid97c6wg0gqbbd6920qmpidd"; }) - (fetchNuGet { name = "Microsoft.AspNetCore.Connections.Abstractions"; version = "5.0.10"; sha256 = "11pp78728irwdc7l8pc1972ipap3ghzw4f33jqklg4vnywc8qcdl"; }) - (fetchNuGet { name = "Microsoft.AspNetCore.Http.Connections.Client"; version = "5.0.10"; sha256 = "0hn5w6vpyz6x49glallp0x2l4q52bvw9xx5g2syisw67a0hphdkn"; }) - (fetchNuGet { name = "Microsoft.AspNetCore.Http.Connections.Common"; version = "5.0.10"; sha256 = "11nm7m1cw26vswdyjcxwbvf3jj8n84378q9n233mw0fmjkz1sb33"; }) - (fetchNuGet { name = "Microsoft.AspNetCore.Http.Features"; version = "5.0.10"; sha256 = "1lzjg799kn8cr6jfz5cxjqnisisvas1dgc1jnsk20m5xanik8r94"; }) - (fetchNuGet { name = "Microsoft.AspNetCore.SignalR.Client"; version = "5.0.10"; sha256 = "126ypvmrsi8gbwdahvz48rw5m850y5z9cyxlqyf35xanql3jvln8"; }) - (fetchNuGet { name = "Microsoft.AspNetCore.SignalR.Client.Core"; version = "5.0.10"; sha256 = "1rq9ayaa6m0vcksbvqx52kmfbdvd6jkilmg4p9b8x18nkycf36pc"; }) - (fetchNuGet { name = "Microsoft.AspNetCore.SignalR.Common"; version = "5.0.10"; sha256 = "158iiijqkingba7s01gyrcc6dbsqnbg5834nrj3whi3wj2dbr01q"; }) - (fetchNuGet { name = "Microsoft.AspNetCore.SignalR.Protocols.Json"; version = "5.0.10"; sha256 = "0ypbfrv9xq947p7612gzda7fl2vsml44fv46j0d3f2glxdzkwzci"; }) - (fetchNuGet { name = "Microsoft.AspNetCore.SignalR.Protocols.MessagePack"; version = "5.0.10"; sha256 = "08xv5w4r9fm0xqsfn4m3gj8v2bizx6qb5vs9ds9mcd3f94a66z4v"; }) - (fetchNuGet { name = "Microsoft.AspNetCore.SignalR.Protocols.NewtonsoftJson"; version = "5.0.10"; sha256 = "064qrjfj4j63v4181g45dxbshjbmafcp8mkya9hdsmja4vq5phb2"; }) + (fetchNuGet { name = "Microsoft.AspNetCore.Connections.Abstractions"; version = "5.0.11"; sha256 = "0x6c6m8s4mq1j21sys8j1xp8sqvy5n3shcpcm0yyx4r2ld2cpdkr"; }) + (fetchNuGet { name = "Microsoft.AspNetCore.Http.Connections.Client"; version = "5.0.11"; sha256 = "1b60rhlbn8s4c39nl2kb1xfq0m3kzy407hdvz2s5r9qc8y9p55ps"; }) + (fetchNuGet { name = "Microsoft.AspNetCore.Http.Connections.Common"; version = "5.0.11"; sha256 = "1rq6lildicnz6ngrf1m46ynya0hbn0hzazdqp6c3lkmkw3pgd8wp"; }) + (fetchNuGet { name = "Microsoft.AspNetCore.Http.Features"; version = "5.0.11"; sha256 = "0n09fldmy60ggffznfwzr99hfpa0p9qxq4hp2zy4j94cmqkqm1pg"; }) + (fetchNuGet { name = "Microsoft.AspNetCore.SignalR.Client.Core"; version = "5.0.11"; sha256 = "13hpp6sq0ad56v1l09gq4mnmj5y1f9lykd2x12hjrdpk3g7gqdix"; }) + (fetchNuGet { name = "Microsoft.AspNetCore.SignalR.Client"; version = "5.0.11"; sha256 = "1iyxkr2lks5xfay4h70z94dnjm5dpbygyyi9krrx1lin1na235ly"; }) + (fetchNuGet { name = "Microsoft.AspNetCore.SignalR.Common"; version = "5.0.11"; sha256 = "1vsskslaz7428f13q0hjf81hvfxip9wsc53z5j37ysk9qmixlnyd"; }) + (fetchNuGet { name = "Microsoft.AspNetCore.SignalR.Protocols.Json"; version = "5.0.11"; sha256 = "0vdr2n9lfjybkv0m21lhpnxv0shlyfnyffv32vziiglhssdza15g"; }) + (fetchNuGet { name = "Microsoft.AspNetCore.SignalR.Protocols.MessagePack"; version = "5.0.11"; sha256 = "0w60z54wxv1nndv7mz9rqswdh8k4rxmgihnxkirp4gr0idr7ln7j"; }) + (fetchNuGet { name = "Microsoft.AspNetCore.SignalR.Protocols.NewtonsoftJson"; version = "5.0.11"; sha256 = "1qrmrkdrzm4bn5zq6a1dk88rpb6pajcs6jh23h43yny68y80jcnr"; }) (fetchNuGet { name = "Microsoft.Bcl.AsyncInterfaces"; version = "1.0.0"; sha256 = "00dx5armvkqjxvkldz3invdlck9nj7w21dlsr2aqp1rqbyrbsbbh"; }) (fetchNuGet { name = "Microsoft.Bcl.AsyncInterfaces"; version = "1.1.0"; sha256 = "1dq5yw7cy6s42193yl4iqscfw5vzkjkgv0zyy32scr4jza6ni1a1"; }) (fetchNuGet { name = "Microsoft.Bcl.AsyncInterfaces"; version = "5.0.0"; sha256 = "0cp5jbax2mf6xr3dqiljzlwi05fv6n9a35z337s92jcljiq674kf"; }) (fetchNuGet { name = "Microsoft.Build.Framework"; version = "16.5.0"; sha256 = "1xgr02r7s9i6s70n237hss4yi9zicssia3zd2ny6s8vyxb7jpdyb"; }) (fetchNuGet { name = "Microsoft.Build.Locator"; version = "1.4.1"; sha256 = "0j119rri7a401rca67cxdyrn3rprzdl1b2wrblqc23xsff1xvlrx"; }) (fetchNuGet { name = "Microsoft.CodeAnalysis.Analyzers"; version = "3.3.2"; sha256 = "162vb5894zxps0cf5n9gc08an7gwybzz87allx3lsszvllr9ldx4"; }) - (fetchNuGet { name = "Microsoft.CodeAnalysis.BannedApiAnalyzers"; version = "3.3.2"; sha256 = "1r8mfbpfy8jdinhfviwhv2vjsz950wn2vwz17lfw5kya1n13nj56"; }) + (fetchNuGet { name = "Microsoft.CodeAnalysis.BannedApiAnalyzers"; version = "3.3.3"; sha256 = "1z6x0d8lpcfjr3sxy25493i17vvcg5bsay6c03qan6mnj5aqzw2k"; }) (fetchNuGet { name = "Microsoft.CodeAnalysis.Common"; version = "3.11.0"; sha256 = "0pwidgg4ifm7cirdy3hf61dyvg6lk4vgb6q7lyb4y0h0b6mvkrcl"; }) - (fetchNuGet { name = "Microsoft.CodeAnalysis.CSharp"; version = "3.11.0"; sha256 = "1h16b7dsp1mq7d7picyfhkssqr6xiyywi5x1fd4jwclyrvanyl81"; }) (fetchNuGet { name = "Microsoft.CodeAnalysis.CSharp.Workspaces"; version = "3.11.0"; sha256 = "16myshcix4a37c4vlig4gi9jnhb6p6py171xgn6b0ab6wz020r71"; }) + (fetchNuGet { name = "Microsoft.CodeAnalysis.CSharp"; version = "3.11.0"; sha256 = "1h16b7dsp1mq7d7picyfhkssqr6xiyywi5x1fd4jwclyrvanyl81"; }) (fetchNuGet { name = "Microsoft.CodeAnalysis.NetAnalyzers"; version = "5.0.3"; sha256 = "1l0zg9wl8yapjq9g2d979zhsmdkr8kfybmxnl7kvgkgldf114fbg"; }) (fetchNuGet { name = "Microsoft.CodeAnalysis.Workspaces.Common"; version = "3.11.0"; sha256 = "07iaqjdhp55cw3y159i3h4j30l9s69gn5q6rv08bkizv8yk7yhls"; }) (fetchNuGet { name = "Microsoft.CodeAnalysis.Workspaces.MSBuild"; version = "3.11.0"; sha256 = "0jmcjx37b3649b16kisg9pjmz3m86pba9b1p1y0vlq1r4hyzvn3m"; }) @@ -96,28 +96,28 @@ (fetchNuGet { name = "Microsoft.Diagnostics.NETCore.Client"; version = "0.2.221401"; sha256 = "1k55l60bg8lj5ayl3kixbzvx2684xd7a9nzha5fiqjgp85cimb3r"; }) (fetchNuGet { name = "Microsoft.Diagnostics.Runtime"; version = "2.0.226801"; sha256 = "1w8ahqkv8nbq2ch17aa9axhqqnybmc9bsxpdhpiy52ix70mr72w1"; }) (fetchNuGet { name = "Microsoft.DotNet.PlatformAbstractions"; version = "2.1.0"; sha256 = "1qydvyyinj3b5mraazjal3n2k7jqhn05b6n1a2f3qjkqkxi63dmy"; }) - (fetchNuGet { name = "Microsoft.EntityFrameworkCore"; version = "2.2.6"; sha256 = "18j2cr50wsikwv7gy3vrjvmpdxckvv537qma8afdpr3yn2klayh5"; }) (fetchNuGet { name = "Microsoft.EntityFrameworkCore.Abstractions"; version = "2.2.6"; sha256 = "1dyxb5ibx24frlgbqy7zch0falq9p1189zvlbxgl94m0hvpml5j3"; 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}) - (fetchNuGet { name = "System.Threading.Tasks"; version = "4.3.0"; sha256 = "134z3v9abw3a6jsw17xl3f6hqjpak5l682k2vz39spj4kmydg6k7"; }) (fetchNuGet { name = "System.Threading.Tasks.Extensions"; version = "4.0.0"; sha256 = "1cb51z062mvc2i8blpzmpn9d9mm4y307xrwi65di8ri18cz5r1zr"; }) (fetchNuGet { name = "System.Threading.Tasks.Extensions"; version = "4.3.0"; sha256 = "1xxcx2xh8jin360yjwm4x4cf5y3a2bwpn2ygkfkwkicz7zk50s2z"; }) (fetchNuGet { name = "System.Threading.Tasks.Extensions"; version = "4.5.2"; sha256 = "1sh63dz0dymqcwmprp0nadm77b83vmm7lyllpv578c397bslb8hj"; }) (fetchNuGet { name = "System.Threading.Tasks.Extensions"; version = "4.5.3"; sha256 = "0g7r6hm572ax8v28axrdxz1gnsblg6kszq17g51pj14a5rn2af7i"; }) (fetchNuGet { name = "System.Threading.Tasks.Extensions"; version = "4.5.4"; sha256 = "0y6ncasgfcgnjrhynaf0lwpkpkmv4a07sswwkwbwb5h7riisj153"; }) + (fetchNuGet { name = "System.Threading.Tasks"; version = "4.0.11"; sha256 = "0nr1r41rak82qfa5m0lhk9mp0k93bvfd7bbd9sdzwx9mb36g28p5"; }) + (fetchNuGet { name = "System.Threading.Tasks"; version = "4.3.0"; sha256 = "134z3v9abw3a6jsw17xl3f6hqjpak5l682k2vz39spj4kmydg6k7"; }) (fetchNuGet { name = "System.Threading.Thread"; version = "4.0.0"; sha256 = "1gxxm5fl36pjjpnx1k688dcw8m9l7nmf802nxis6swdaw8k54jzc"; }) (fetchNuGet { name = "System.Threading.Timer"; version = "4.0.1"; sha256 = "15n54f1f8nn3mjcjrlzdg6q3520571y012mx7v991x2fvp73lmg6"; }) (fetchNuGet { name = "System.Threading.Timer"; version = "4.3.0"; sha256 = "1nx773nsx6z5whv8kaa1wjh037id2f1cxhb69pvgv12hd2b6qs56"; }) + (fetchNuGet { name = "System.Threading"; version = "4.0.11"; sha256 = "19x946h926bzvbsgj28csn46gak2crv2skpwsx80hbgazmkgb1ls"; }) + (fetchNuGet { name = "System.Threading"; version = "4.3.0"; sha256 = "0rw9wfamvhayp5zh3j7p1yfmx9b5khbf4q50d8k5rk993rskfd34"; }) (fetchNuGet { name = "System.Xml.ReaderWriter"; version = "4.0.11"; sha256 = "0c6ky1jk5ada9m94wcadih98l6k1fvf6vi7vhn1msjixaha419l5"; }) (fetchNuGet { name = "System.Xml.ReaderWriter"; version = "4.3.0"; sha256 = "0c47yllxifzmh8gq6rq6l36zzvw4kjvlszkqa9wq3fr59n0hl3s1"; }) (fetchNuGet { name = "System.Xml.XDocument"; version = "4.0.11"; sha256 = "0n4lvpqzy9kc7qy1a4acwwd7b7pnvygv895az5640idl2y9zbz18"; }) diff --git a/pkgs/games/portmod/default.nix b/pkgs/games/portmod/default.nix index b677c63defeb..27e00a746486 100644 --- a/pkgs/games/portmod/default.nix +++ b/pkgs/games/portmod/default.nix @@ -1,22 +1,22 @@ -{ lib, callPackage, python3Packages, fetchFromGitLab, cacert, - rustPlatform, bubblewrap, git, perlPackages, imagemagick, fetchurl, fetchzip, - jre, makeWrapper, tr-patcher, tes3cmd, fetchpatch }: +{ lib, callPackage, python3Packages, fetchFromGitLab, cacert +, rustPlatform, bubblewrap, git, perlPackages, imagemagick, fetchurl, fetchzip +, jre, makeWrapper, tr-patcher, tes3cmd, openmw }: let - version = "2.0.3"; + version = "2.1.0"; src = fetchFromGitLab { owner = "portmod"; repo = "Portmod"; rev = "v${version}"; - sha256 = "sha256-vMdyaI1Ps7bFoRvwdVNVG9vPFEiGb7CPvKEWfxiM128="; + sha256 = "sha256-b/ENApFovMPNUMbJhwY+TZCnSzpr1e/IKJ/5XAGTQjE="; }; portmod-rust = rustPlatform.buildRustPackage rec { inherit src version; pname = "portmod-rust"; - cargoHash = "sha256-tAghZmlg34jHr8gtNgL3MQ8EI7K6/TfDcTbBjxdWLr0="; + cargoHash = "sha256-3EfMMpSWSYsB3nXaoGGDuKQ9duyCKzbrT6oeATnzqLE="; nativeBuildInputs = [ python3Packages.python ]; @@ -30,6 +30,7 @@ let tr-patcher tes3cmd imagemagick + openmw ]; in @@ -47,15 +48,6 @@ python3Packages.buildPythonApplication rec { --replace "RustExtension(\"portmodlib.portmod\", binding=Binding.PyO3, strip=True)" "" ''; - patches = [ - (fetchpatch { - # fix error when symlinks are present in the path (https://gitlab.com/portmod/portmod/-/merge_requests/393) - # happen with ~/.nix-profile - url = "https://gitlab.com/portmod/portmod/-/merge_requests/393.patch"; - sha256 = "sha256-XHifwD/Nh7UiMZdvSNudVF7qpBOpjGTKSr4VVdJqUdA="; - }) - ]; - propagatedBuildInputs = with python3Packages; [ setuptools-scm setuptools diff --git a/pkgs/games/quake2/yquake2/default.nix b/pkgs/games/quake2/yquake2/default.nix index 57405d9abd38..d251c48d3823 100644 --- a/pkgs/games/quake2/yquake2/default.nix +++ b/pkgs/games/quake2/yquake2/default.nix @@ -15,15 +15,20 @@ let yquake2 = stdenv.mkDerivation rec { pname = "yquake2"; - version = "7.43"; + version = "8.00"; src = fetchFromGitHub { owner = "yquake2"; repo = "yquake2"; rev = "QUAKE2_${builtins.replaceStrings ["."] ["_"] version}"; - sha256 = "1dszbvxlh1npq4nv9s4wv4lcyfgb01k92ncxrrczsxy1dddg86pp"; + sha256 = "0xnpmh0pl1095dykhc76rp242x587yh9zh6wayqzaam6cn3xlz3w"; }; + postPatch = '' + substituteInPlace src/common/filesystem.c \ + --replace /usr/share/games/quake2 $out/share/games/quake2 + ''; + nativeBuildInputs = [ cmake ]; buildInputs = [ SDL2 libGL curl ] diff --git a/pkgs/games/quake3/ioquake/default.nix b/pkgs/games/quake3/ioquake/default.nix index 1ac8a41ca1a7..2bbbb43c963c 100644 --- a/pkgs/games/quake3/ioquake/default.nix +++ b/pkgs/games/quake3/ioquake/default.nix @@ -1,10 +1,25 @@ -{ lib, stdenv, fetchFromGitHub, which, pkg-config, SDL2, libGL, openalSoft -, curl, speex, opusfile, libogg, libvorbis, libopus, libjpeg, mumble, freetype +{ lib +, stdenv +, fetchFromGitHub +, which +, pkg-config +, SDL2 +, libGL +, openalSoft +, curl +, speex +, opusfile +, libogg +, libvorbis +, libopus +, libjpeg +, mumble +, freetype }: stdenv.mkDerivation { - pname = "ioquake3-git"; - version = "2021-07-20"; + pname = "ioquake3"; + version = "unstable-2021-07-20"; src = fetchFromGitHub { owner = "ioquake"; @@ -15,8 +30,18 @@ stdenv.mkDerivation { nativeBuildInputs = [ which pkg-config ]; buildInputs = [ - SDL2 libGL openalSoft curl speex opusfile libogg libvorbis libopus libjpeg - freetype mumble + SDL2 + libGL + openalSoft + curl + speex + opusfile + libogg + libvorbis + libopus + libjpeg + freetype + mumble ]; enableParallelBuilding = true; diff --git a/pkgs/games/soldat-unstable/default.nix b/pkgs/games/soldat-unstable/default.nix index 496d51e31c41..b3ae3b58cfe7 100644 --- a/pkgs/games/soldat-unstable/default.nix +++ b/pkgs/games/soldat-unstable/default.nix @@ -1,19 +1,19 @@ { lib, stdenv, fetchFromGitHub, fpc, zip, makeWrapper , SDL2, freetype, physfs, openal, gamenetworkingsockets -, xorg, autoPatchelfHook +, xorg, autoPatchelfHook, cmake }: let base = stdenv.mkDerivation rec { pname = "soldat-base"; - version = "unstable-2020-11-26"; + version = "unstable-2021-09-05"; src = fetchFromGitHub { name = "base"; owner = "Soldat"; repo = "base"; - rev = "e5f9c35ec12562595b248a7a921dd3458b36b605"; - sha256 = "0qg0p2adb5v6di44iqczswldhypdqvn1nl96vxkfkxdg9i8x90w3"; + rev = "6c74d768d511663e026e015dde788006c74406b5"; + sha256 = "175gmkdccy8rnkd95h2zqldqfydyji1hfby8b1qbnl8wz4dh08mz"; }; nativeBuildInputs = [ zip ]; @@ -39,55 +39,37 @@ in stdenv.mkDerivation rec { pname = "soldat"; - version = "unstable-2021-04-27"; + version = "unstable-2021-11-01"; src = fetchFromGitHub { name = "soldat"; owner = "Soldat"; repo = "soldat"; - rev = "4d17667c316ff08934e97448b7f290a8dc434e81"; - sha256 = "1pf557psmhfaagblfwdn36cw80j7bgs0lgjq8hmjbv58dysw3jdb"; + rev = "7780d2948b724970af9f2aaf4fb4e4350d5438d9"; + sha256 = "0r39d1394q7kabsgq6vpdlzwsajxafsg23i0r273nggfvs3m805z"; }; - nativeBuildInputs = [ fpc makeWrapper autoPatchelfHook ]; + patches = [ + # Don't build GameNetworkingSockets as an ExternalProject, + # see https://github.com/Soldat/soldat/issues/73 + ./gamenetworkingsockets-no-external.patch + ]; + + nativeBuildInputs = [ fpc makeWrapper autoPatchelfHook cmake ]; + + cmakeFlags = [ + "-DADD_ASSETS=OFF" # We provide base's smods via nix + ]; buildInputs = [ SDL2 freetype physfs openal gamenetworkingsockets ]; + # TODO(@sternenseemann): set proper rpath via cmake, so we don't need autoPatchelfHook runtimeDependencies = [ xorg.libX11 ]; - buildPhase = '' - runHook preBuild - - mkdir -p client/build server/build - - # build .so from stb headers - pushd client/libs/stb - make - popd - - # build client - pushd client - make mode=release - popd - - # build server - pushd server - make mode=release - popd - - runHook postBuild - ''; - - installPhase = '' - runHook preInstall - - install -Dm644 client/libs/stb/libstb.so -t $out/lib - install -Dm755 client/build/soldat_* $out/bin/soldat - install -Dm755 server/build/soldatserver_* $out/bin/soldatserver - - # make sure soldat{,server} find their game archive, - # let them write their state and configuration files - # to $XDG_CONFIG_HOME/soldat/soldat{,server} unless - # the user specifies otherwise. + # make sure soldat{,server} find their game archive, + # let them write their state and configuration files + # to $XDG_CONFIG_HOME/soldat/soldat{,server} unless + # the user specifies otherwise. + postInstall = '' for p in $out/bin/soldatserver $out/bin/soldat; do configDir="\''${XDG_CONFIG_HOME:-\$HOME/.config}/soldat/$(basename "$p")" @@ -97,8 +79,6 @@ stdenv.mkDerivation rec { --add-flags "-fs_userpath \"$configDir\"" \ --add-flags "-fs_basepath \"${base}/share/soldat\"" done - - runHook postInstall ''; meta = with lib; { @@ -106,7 +86,7 @@ stdenv.mkDerivation rec { license = [ licenses.mit base.meta.license ]; inherit (src.meta) homepage; maintainers = [ maintainers.sternenseemann ]; - platforms = platforms.x86_64 ++ platforms.i686; + platforms = [ "x86_64-linux" "i686-linux" ]; # portability currently mainly limited by fpc # in nixpkgs which doesn't work on darwin, # aarch64 and arm support should be possible: diff --git a/pkgs/games/soldat-unstable/gamenetworkingsockets-no-external.patch b/pkgs/games/soldat-unstable/gamenetworkingsockets-no-external.patch new file mode 100644 index 000000000000..629ca6c67518 --- /dev/null +++ b/pkgs/games/soldat-unstable/gamenetworkingsockets-no-external.patch @@ -0,0 +1,14 @@ +diff --git a/CMakeLists.txt b/CMakeLists.txt +index 1084048..1ea4c84 100644 +--- a/CMakeLists.txt ++++ b/CMakeLists.txt +@@ -143,7 +143,8 @@ if(BUILD_CLIENT OR BUILD_SERVER) + file(WRITE ${PROJECT_BINARY_DIR}/bin/steam_appid.txt "638490") + else() + # GameNetworkingSockets +- add_subdirectory(shared/libs/GameNetworkingSockets) ++ # add_subdirectory(shared/libs/GameNetworkingSockets) ++ find_package(GameNetworkingSockets REQUIRED) + endif() + endif() + diff --git a/pkgs/games/stepmania/0001-fix-build-with-ffmpeg-4.patch b/pkgs/games/stepmania/0001-fix-build-with-ffmpeg-4.patch new file mode 100644 index 000000000000..65686f5546c4 --- /dev/null +++ b/pkgs/games/stepmania/0001-fix-build-with-ffmpeg-4.patch @@ -0,0 +1,136 @@ +From 33d928c54f4b35f8877cacd1e2c77b68b4dddc06 Mon Sep 17 00:00:00 2001 +From: Zane van Iperen <zane@zanevaniperen.com> +Date: Sun, 7 Nov 2021 15:46:37 +1000 +Subject: [PATCH] fix build with ffmpeg 4 + +--- + src/arch/MovieTexture/MovieTexture_FFMpeg.cpp | 5 +---- + src/arch/MovieTexture/MovieTexture_FFMpeg.h | 22 +++++++++---------- + 2 files changed, 12 insertions(+), 15 deletions(-) + +diff --git a/src/arch/MovieTexture/MovieTexture_FFMpeg.cpp b/src/arch/MovieTexture/MovieTexture_FFMpeg.cpp +index bdf2356..f79fea2 100644 +--- a/src/arch/MovieTexture/MovieTexture_FFMpeg.cpp ++++ b/src/arch/MovieTexture/MovieTexture_FFMpeg.cpp +@@ -445,7 +445,7 @@ RString MovieDecoder_FFMpeg::Open( RString sFile ) + return "Couldn't find any video streams"; + m_pStream = m_fctx->streams[stream_idx]; + +- if( m_pStream->codec->codec_id == avcodec::CODEC_ID_NONE ) ++ if( m_pStream->codec->codec_id == avcodec::AV_CODEC_ID_NONE ) + return ssprintf( "Unsupported codec %08x", m_pStream->codec->codec_tag ); + + RString sError = OpenCodec(); +@@ -474,9 +474,6 @@ RString MovieDecoder_FFMpeg::OpenCodec() + m_pStream->codec->idct_algo = FF_IDCT_AUTO; + m_pStream->codec->error_concealment = 3; + +- if( pCodec->capabilities & CODEC_CAP_DR1 ) +- m_pStream->codec->flags |= CODEC_FLAG_EMU_EDGE; +- + LOG->Trace("Opening codec %s", pCodec->name ); + + int ret = avcodec::avcodec_open2( m_pStream->codec, pCodec, NULL ); +diff --git a/src/arch/MovieTexture/MovieTexture_FFMpeg.h b/src/arch/MovieTexture/MovieTexture_FFMpeg.h +index f4d25ef..32564e5 100644 +--- a/src/arch/MovieTexture/MovieTexture_FFMpeg.h ++++ b/src/arch/MovieTexture/MovieTexture_FFMpeg.h +@@ -64,7 +64,7 @@ private: + + avcodec::AVStream *m_pStream; + avcodec::AVFrame *m_Frame; +- avcodec::PixelFormat m_AVTexfmt; /* PixelFormat of output surface */ ++ avcodec::AVPixelFormat m_AVTexfmt; /* PixelFormat of output surface */ + avcodec::SwsContext *m_swsctx; + + avcodec::AVFormatContext *m_fctx; +@@ -90,7 +90,7 @@ static struct AVPixelFormat_t + { + int bpp; + uint32_t masks[4]; +- avcodec::PixelFormat pf; ++ avcodec::AVPixelFormat pf; + bool bHighColor; + bool bByteSwapOnLittleEndian; + MovieDecoderPixelFormatYCbCr YUV; +@@ -101,7 +101,7 @@ static struct AVPixelFormat_t + 0x00FF0000, + 0x0000FF00, + 0x000000FF }, +- avcodec::PIX_FMT_YUYV422, ++ avcodec::AV_PIX_FMT_YUYV422, + false, /* N/A */ + true, + PixelFormatYCbCr_YUYV422, +@@ -112,7 +112,7 @@ static struct AVPixelFormat_t + 0x00FF0000, + 0xFF000000, + 0x000000FF }, +- avcodec::PIX_FMT_BGRA, ++ avcodec::AV_PIX_FMT_BGRA, + true, + true, + PixelFormatYCbCr_Invalid, +@@ -123,7 +123,7 @@ static struct AVPixelFormat_t + 0x0000FF00, + 0x000000FF, + 0xFF000000 }, +- avcodec::PIX_FMT_ARGB, ++ avcodec::AV_PIX_FMT_ARGB, + true, + true, + PixelFormatYCbCr_Invalid, +@@ -135,7 +135,7 @@ static struct AVPixelFormat_t + 0x0000FF00, + 0x00FF0000, + 0xFF000000 }, +- avcodec::PIX_FMT_ABGR, ++ avcodec::AV_PIX_FMT_ABGR, + true, + true, + PixelFormatYCbCr_Invalid, +@@ -146,7 +146,7 @@ static struct AVPixelFormat_t + 0x00FF0000, + 0x0000FF00, + 0x000000FF }, +- avcodec::PIX_FMT_RGBA, ++ avcodec::AV_PIX_FMT_RGBA, + true, + true, + PixelFormatYCbCr_Invalid, +@@ -157,7 +157,7 @@ static struct AVPixelFormat_t + 0x00FF00, + 0x0000FF, + 0x000000 }, +- avcodec::PIX_FMT_RGB24, ++ avcodec::AV_PIX_FMT_RGB24, + true, + true, + PixelFormatYCbCr_Invalid, +@@ -168,7 +168,7 @@ static struct AVPixelFormat_t + 0x00FF00, + 0xFF0000, + 0x000000 }, +- avcodec::PIX_FMT_BGR24, ++ avcodec::AV_PIX_FMT_BGR24, + true, + true, + PixelFormatYCbCr_Invalid, +@@ -179,12 +179,12 @@ static struct AVPixelFormat_t + 0x03E0, + 0x001F, + 0x0000 }, +- avcodec::PIX_FMT_RGB555, ++ avcodec::AV_PIX_FMT_RGB555, + false, + false, + PixelFormatYCbCr_Invalid, + }, +- { 0, { 0,0,0,0 }, avcodec::PIX_FMT_NB, true, false, PixelFormatYCbCr_Invalid } ++ { 0, { 0,0,0,0 }, avcodec::AV_PIX_FMT_NB, true, false, PixelFormatYCbCr_Invalid } + }; + + #endif +-- +2.31.1 + diff --git a/pkgs/games/stepmania/default.nix b/pkgs/games/stepmania/default.nix index 70e1acb1f34f..c7f8f0d7a27f 100644 --- a/pkgs/games/stepmania/default.nix +++ b/pkgs/games/stepmania/default.nix @@ -14,6 +14,10 @@ stdenv.mkDerivation rec { sha256 = "0a7y9l7xm510vgnpmj1is7p9m6d6yd0fcaxrjcickz295k5w3rdn"; }; + patches = [ + ./0001-fix-build-with-ffmpeg-4.patch + ]; + nativeBuildInputs = [ cmake nasm ]; buildInputs = [ diff --git a/pkgs/games/stockfish/default.nix b/pkgs/games/stockfish/default.nix index 05caaaed63e7..5a35ac51754c 100644 --- a/pkgs/games/stockfish/default.nix +++ b/pkgs/games/stockfish/default.nix @@ -11,23 +11,23 @@ let if stdenv.isAarch64 then "armv8" else "unknown"; - nnueFile = "nn-3475407dc199.nnue"; + nnueFile = "nn-13406b1dcbe0.nnue"; nnue = fetchurl { name = nnueFile; url = "https://tests.stockfishchess.org/api/nn/${nnueFile}"; - sha256 = "sha256-NHVAfcGZc+pERnZ4Y0zOAj1iDkGXcMERzIk3/maJ7Ic="; + sha256 = "sha256-E0BrHcvgo238XgfaUdjbOLekXX2kMHjsJadiTCuDI28="; }; in stdenv.mkDerivation rec { pname = "stockfish"; - version = "14"; + version = "14.1"; src = fetchFromGitHub { owner = "official-stockfish"; repo = "Stockfish"; rev = "sf_${version}"; - sha256 = "sha256-fX0Tr1yqjmNRSxmisFRKUY1E5//qF3zAfJ8innAeyxA="; + sha256 = "sha256-bb62yezHKXu0J7NKavX8xhHghaUjUFYNG5U6dh/D+Co="; }; # This addresses a linker issue with Darwin @@ -56,7 +56,7 @@ stdenv.mkDerivation rec { ''; maintainers = with maintainers; [ luispedro siraben ]; platforms = ["x86_64-linux" "i686-linux" "x86_64-darwin" "aarch64-linux"]; - license = licenses.gpl2; + license = licenses.gpl3Only; }; } diff --git a/pkgs/games/the-powder-toy/default.nix b/pkgs/games/the-powder-toy/default.nix index 6d7b4bccc955..ba2112617bbb 100644 --- a/pkgs/games/the-powder-toy/default.nix +++ b/pkgs/games/the-powder-toy/default.nix @@ -18,6 +18,10 @@ stdenv.mkDerivation rec { installPhase = '' install -Dm 755 powder $out/bin/powder + + mkdir -p $out/share/applications + mv ../resources/powder.desktop $out/share/applications + mv ../resources $out/share ''; propagatedBuildInputs = lib.optionals stdenv.isDarwin [ darwin.apple_sdk.frameworks.Cocoa ]; diff --git a/pkgs/games/vdrift/default.nix b/pkgs/games/vdrift/default.nix index 407603687ba5..04f65cf79379 100644 --- a/pkgs/games/vdrift/default.nix +++ b/pkgs/games/vdrift/default.nix @@ -1,5 +1,18 @@ -{ lib, stdenv, fetchFromGitHub, fetchsvn, pkg-config, sconsPackages, libGLU, libGL, SDL2, SDL2_image -, libvorbis, bullet, curl, gettext, writeTextFile +{ lib +, stdenv +, fetchFromGitHub +, fetchsvn +, pkg-config +, sconsPackages +, libGLU +, libGL +, SDL2 +, SDL2_image +, libvorbis +, bullet +, curl +, gettext +, writeTextFile , data ? fetchsvn { url = "svn://svn.code.sf.net/p/vdrift/code/vdrift-data"; @@ -8,7 +21,7 @@ } }: let - version = "git"; + version = "unstable-2017-12-09"; bin = stdenv.mkDerivation { pname = "vdrift"; inherit version; @@ -36,7 +49,7 @@ let description = "Car racing game"; homepage = "http://vdrift.net/"; license = lib.licenses.gpl2Plus; - maintainers = with lib.maintainers; [viric]; + maintainers = with lib.maintainers; [ viric ]; platforms = lib.platforms.linux; }; }; @@ -54,7 +67,7 @@ in writeTextFile { ''; } // { meta = bin.meta // { - hydraPlatforms = []; + hydraPlatforms = [ ]; }; unwrapped = bin; inherit bin data; diff --git a/pkgs/games/warzone2100/default.nix b/pkgs/games/warzone2100/default.nix index 28a4b7d1a97c..0c5c5112f506 100644 --- a/pkgs/games/warzone2100/default.nix +++ b/pkgs/games/warzone2100/default.nix @@ -39,11 +39,11 @@ in stdenv.mkDerivation rec { inherit pname; - version = "4.2.0"; + version = "4.2.1"; src = fetchurl { url = "mirror://sourceforge/${pname}/releases/${version}/${pname}_src.tar.xz"; - sha256 = "sha256-1M77zuAqunfAjK2Jvu08Z7inCMdBYX92AmyMD9eaue8="; + sha256 = "sha256-N9D4K3+/Nt3N3/uHDD+jD6tzL0FMwmV7l+WGjGYa3Yk="; }; buildInputs = [ diff --git a/pkgs/misc/ananicy-cpp/default.nix b/pkgs/misc/ananicy-cpp/default.nix new file mode 100644 index 000000000000..25bcaec13267 --- /dev/null +++ b/pkgs/misc/ananicy-cpp/default.nix @@ -0,0 +1,46 @@ +{ lib +, gcc11Stdenv +, fetchFromGitLab +, makeWrapper +, cmake +, spdlog +, nlohmann_json +, systemd +}: + +gcc11Stdenv.mkDerivation rec { + pname = "ananicy-cpp"; + version = "unstable-2021-10-13"; + + src = fetchFromGitLab { + owner = "ananicy-cpp"; + repo = "ananicy-cpp"; + rev = "6a14fe7353221c89347eddbbcafb35cf5fee4758"; + sha256 = "sha256-V0QPXC17ZD2c4MK3DAkzoPgKOU5V5BjfQKUk7I6f8WM="; + }; + + nativeBuildInputs = [ + makeWrapper + cmake + ]; + + buildInputs = [ + spdlog + nlohmann_json + systemd + ]; + + cmakeFlags = [ + "-DUSE_EXTERNAL_JSON=yON" + "-DUSE_EXTERNAL_SPDLOG=ON" + "-DUSE_EXTERNAL_FMTLIB=ON" + ]; + + meta = with lib; { + homepage = "https://gitlab.com/ananicy-cpp/ananicy-cpp"; + description = "Rewrite of ananicy in c++ for lower cpu and memory usage"; + license = licenses.gpl3Only; + platforms = platforms.linux; + maintainers = with maintainers; [ artturin ]; + }; +} diff --git a/pkgs/misc/ananicy/default.nix b/pkgs/misc/ananicy/default.nix new file mode 100644 index 000000000000..3c2392df731d --- /dev/null +++ b/pkgs/misc/ananicy/default.nix @@ -0,0 +1,58 @@ +{ lib, stdenv, python3, fetchFromGitHub, makeWrapper, schedtool, sysctl, util-linux, fetchpatch }: + +stdenv.mkDerivation rec { + pname = "ananicy"; + version = "unstable-2021-11-05"; + + src = fetchFromGitHub { + owner = "nefelim4ag"; + repo = "ananicy"; + rev = "b8968e9b32b0e4e6a01dc2314e43de8fee9da691"; + sha256 = "sha256-tlPY81xdUpZrDYdApXooZ0Mst0n7ARVHyUrmymqg0rk="; + }; + + patches = [ + # https://github.com/Nefelim4ag/Ananicy/pull/437 + # fix makefile destinations + (fetchpatch { + url = "https://github.com/Nefelim4ag/Ananicy/commit/dbda0f50670de3f249991706ef1cc107c5197a2f.patch"; + sha256 = "sha256-vMcJxekg2QUbm253CLAv3tmo5kedSlw+/PI/LamNWwc="; + # only used for debian packaging. lets exclude it so the patch applies even when that file is changed + excludes = [ "package.sh" ]; + }) + # https://github.com/Nefelim4ag/Ananicy/pull/439 + # fix syntax error + (fetchpatch { + url = "https://github.com/Nefelim4ag/Ananicy/commit/0f8b809298ccfd88d0e2ab952d6e4131865246da.patch"; + sha256 = "sha256-PWE4F0G97gecgc9HnG7ScA78+QVc8u8aF9u74qVChX0="; + }) + ]; + + nativeBuildInputs = [ makeWrapper ]; + buildInputs = [ python3 ]; + + makeFlags = [ + "PREFIX=$(out)" + "SYSCONFDIR=${placeholder "out"}/etc" + ]; + + dontConfigure = true; + dontBuild = true; + + postInstall = '' + wrapProgram $out/bin/ananicy \ + --prefix PATH : ${lib.makeBinPath [ schedtool util-linux ]} + + substituteInPlace $out/lib/systemd/system/ananicy.service \ + --replace "/sbin/sysctl" "${sysctl}/bin/sysctl" \ + --replace "/usr/bin/ananicy" "$out/bin/ananicy" + ''; + + meta = with lib; { + homepage = "https://github.com/Nefelim4ag/Ananicy"; + description = "Another auto nice daemon, with community rules support"; + license = licenses.gpl3Only; + platforms = platforms.linux; + maintainers = with maintainers; [ artturin ]; + }; +} diff --git a/pkgs/misc/arm-trusted-firmware/default.nix b/pkgs/misc/arm-trusted-firmware/default.nix index 49d27487bae7..60ddd621a05a 100644 --- a/pkgs/misc/arm-trusted-firmware/default.nix +++ b/pkgs/misc/arm-trusted-firmware/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchFromGitHub, fetchpatch, openssl, pkgsCross, buildPackages }: +{ lib, stdenv, fetchFromGitHub, openssl, pkgsCross, buildPackages }: let buildArmTrustedFirmware = { filesToInstall diff --git a/pkgs/misc/cliscord/default.nix b/pkgs/misc/cliscord/default.nix new file mode 100644 index 000000000000..7307fc607009 --- /dev/null +++ b/pkgs/misc/cliscord/default.nix @@ -0,0 +1,27 @@ +{ lib, rustPlatform, openssl, pkg-config, fetchFromGitHub }: + +rustPlatform.buildRustPackage rec { + pname = "cliscord"; + version = "unstable-2020-12-08"; + + src = fetchFromGitHub { + owner = "somebody1234"; + repo = pname; + rev = "b02fbe5516fd7f153d0b0e3c7d5d11e2ab651b43"; + sha256 = "sha256-hzZozgOkw8kFppuHiX9TQxHhxKRv8utWWbhEOIzKDLo="; + }; + + buildInputs = [ openssl ]; + + nativeBuildInputs = [ pkg-config ]; + + cargoSha256 = "12zfwdssyv0j83bff6s4376d99pv7z8ya8q8adwmf5ayvgmj4xz4"; + + meta = with lib; { + description = "Simple command-line tool to send text and files to discord"; + homepage = "https://github.com/somebody1234/cliscord"; + license = licenses.mit; + maintainers = with maintainers; [ legendofmiracles ]; + mainProgram = "cliscord"; + }; +} diff --git a/pkgs/misc/drivers/epson-alc1100/default.nix b/pkgs/misc/drivers/epson-alc1100/default.nix index 5551f734138c..641d68d39479 100644 --- a/pkgs/misc/drivers/epson-alc1100/default.nix +++ b/pkgs/misc/drivers/epson-alc1100/default.nix @@ -4,7 +4,7 @@ let version = "1.2-0"; libstdcpp5 = fetchurl { - url = "http://old-releases.ubuntu.com/ubuntu/pool/universe/g/gcc-3.3/libstdc++5_3.3.6-17ubuntu1_i386.deb"; + url = "mirror://ubuntu/pool/universe/g/gcc-3.3/libstdc++5_3.3.6-17ubuntu1_i386.deb"; sha256 = "10f8zcmqaa7skvg2bz94mnlgqpan4iscvi8913r6iawjh7hiisjy"; }; in diff --git a/pkgs/misc/drivers/gutenprint/bin.nix b/pkgs/misc/drivers/gutenprint/bin.nix index 891421d3312c..e1fcb838957c 100644 --- a/pkgs/misc/drivers/gutenprint/bin.nix +++ b/pkgs/misc/drivers/gutenprint/bin.nix @@ -25,7 +25,8 @@ TODO tidy this all up. Find source instead of binary. Fix paths ... Find out how */ stdenv.mkDerivation { - name = "cups-gutenprint-binary-5.0.1"; + pname = "cups-gutenprint-binary"; + version = "5.0.1"; src = if stdenv.hostPlatform.system == "x86_64-linux" then fetchurl { url = "https://www.openprinting.org/download/printdriver/debian/dists/lsb3.1/main/binary-amd64/gutenprint_5.0.1-1lsb3.1_amd64.deb"; diff --git a/pkgs/misc/drivers/hplip/3.16.11.nix b/pkgs/misc/drivers/hplip/3.16.11.nix index 37609a66c944..07a9f807772b 100644 --- a/pkgs/misc/drivers/hplip/3.16.11.nix +++ b/pkgs/misc/drivers/hplip/3.16.11.nix @@ -2,7 +2,7 @@ , pkg-config , cups, libjpeg, libusb1, python2Packages, sane-backends, dbus, usbutils , net-snmp, openssl, nettools -, bash, coreutils, util-linux +, bash, util-linux , qtSupport ? true , withPlugin ? false }: diff --git a/pkgs/misc/drivers/hplip/default.nix b/pkgs/misc/drivers/hplip/default.nix index f33ca5024383..adfe889e02d9 100644 --- a/pkgs/misc/drivers/hplip/default.nix +++ b/pkgs/misc/drivers/hplip/default.nix @@ -3,7 +3,7 @@ , cups, zlib, libjpeg, libusb1, python3Packages, sane-backends , dbus, file, ghostscript, usbutils , net-snmp, openssl, perl, nettools, avahi -, bash, coreutils, util-linux +, bash, util-linux # To remove references to gcc-unwrapped , removeReferencesTo, qt5 , withQt5 ? true diff --git a/pkgs/misc/drivers/moltengamepad/default.nix b/pkgs/misc/drivers/moltengamepad/default.nix index 486e4e96dd41..747866b9cfc9 100644 --- a/pkgs/misc/drivers/moltengamepad/default.nix +++ b/pkgs/misc/drivers/moltengamepad/default.nix @@ -1,8 +1,8 @@ { lib, stdenv, fetchFromGitHub, udev }: stdenv.mkDerivation { - pname = "moltengamepad-git"; - version = "2016-05-04"; + pname = "moltengamepad"; + version = "unstable-2016-05-04"; src = fetchFromGitHub { owner = "jgeumlek"; diff --git a/pkgs/misc/drivers/utsushi/default.nix b/pkgs/misc/drivers/utsushi/default.nix index ae3a083148ba..46a72fdd0dad 100644 --- a/pkgs/misc/drivers/utsushi/default.nix +++ b/pkgs/misc/drivers/utsushi/default.nix @@ -1,6 +1,6 @@ { lib, stdenv, writeScriptBin, fetchFromGitLab, autoreconfHook, pkg-config , autoconf-archive, libxslt, boost , gtkmm2 , imagemagick, sane-backends -, tesseract4, udev, libusb1, gnum4 }: +, tesseract4, udev, libusb1 }: let diff --git a/pkgs/misc/emulators/cdemu/vhba.nix b/pkgs/misc/emulators/cdemu/vhba.nix index 1a4357b543b1..6e7cb08e449a 100644 --- a/pkgs/misc/emulators/cdemu/vhba.nix +++ b/pkgs/misc/emulators/cdemu/vhba.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "vhba"; - version = "20210418"; + version = "20211023"; src = fetchurl { url = "mirror://sourceforge/cdemu/vhba-module-${version}.tar.xz"; - sha256 = "119zgav6caialmf3hr096wkf72l9h76sqc9w5dhx26kj4yp85g8q"; + sha256 = "sha256-YAh7qqkozvoG1WhHBv7z1IcSrP75LLMq/FB6sZrevxA="; }; makeFlags = [ "KDIR=${kernel.dev}/lib/modules/${kernel.modDirVersion}/build" "INSTALL_MOD_PATH=$(out)" ]; diff --git a/pkgs/misc/emulators/citra/default.nix b/pkgs/misc/emulators/citra/default.nix index 5efe27770b60..c1d4724cee9b 100644 --- a/pkgs/misc/emulators/citra/default.nix +++ b/pkgs/misc/emulators/citra/default.nix @@ -1,27 +1,76 @@ -{ mkDerivation, lib, fetchgit, cmake, SDL2, qtbase, qtmultimedia, boost -, wrapQtAppsHook }: +{ lib +, stdenv +, fetchFromGitHub +, cmake +, wrapQtAppsHook +, SDL2 +, qtbase +, qtmultimedia +, boost17x +, libpulseaudio +, pkg-config +, libusb1 +, zstd +, libressl +, alsa-lib +, rapidjson +, aacHleDecoding ? true +, fdk_aac +, ffmpeg-full +}: -mkDerivation { +stdenv.mkDerivation { pname = "citra"; version = "2021-11-01"; - # Submodules - src = fetchgit { - url = "https://github.com/citra-emu/citra"; + src = fetchFromGitHub { + owner = "citra-emu"; + repo = "citra"; rev = "5a7d80172dd115ad9bc6e8e85cee6ed9511c48d0"; sha256 = "sha256-vy2JMizBsnRK9NBEZ1dxT7fP/HFhOZSsC+5P+Dzi27s="; + fetchSubmodules = true; }; - nativeBuildInputs = [ cmake wrapQtAppsHook ]; - buildInputs = [ SDL2 qtbase qtmultimedia boost ]; + nativeBuildInputs = [ cmake wrapQtAppsHook pkg-config ]; + buildInputs = [ + SDL2 + qtbase + qtmultimedia + libpulseaudio + boost17x + libusb1 + alsa-lib + rapidjson # for discord-rpc + ] ++ lib.optional aacHleDecoding [ fdk_aac ffmpeg-full ]; + + cmakeFlags = [ + "-DUSE_SYSTEM_BOOST=ON" + "-DUSE_DISCORD_PRESENCE=ON" + ] ++ lib.optionals aacHleDecoding [ + "-DENABLE_FFMPEG_AUDIO_DECODER=ON" + "-DCITRA_USE_BUNDLED_FFMPEG=OFF" + ]; + + postPatch = '' + # we already know the submodules are present + substituteInPlace CMakeLists.txt \ + --replace "check_submodules_present()" "" - preConfigure = '' # Trick configure system. sed -n 's,^ *path = \(.*\),\1,p' .gitmodules | while read path; do - mkdir "$path/.git" + mkdir "$path/.git" done + + rm -rf externals/zstd externals/libressl + cp -r ${zstd.src} externals/zstd + tar xf ${libressl.src} -C externals/ + mv externals/${libressl.name} externals/libressl + chmod -R a+w externals/zstd ''; + # Todo: cubeb audio backend (the default one) doesn't work on the SDL interface. + # Note that the two interfaces have two separate configuration files. + meta = with lib; { homepage = "https://citra-emu.org"; description = "An open-source emulator for the Nintendo 3DS"; diff --git a/pkgs/misc/emulators/commanderx16/run.nix b/pkgs/misc/emulators/commanderx16/run.nix index cf14252b487c..1f14fdb223c7 100644 --- a/pkgs/misc/emulators/commanderx16/run.nix +++ b/pkgs/misc/emulators/commanderx16/run.nix @@ -1,6 +1,4 @@ -{ lib -, stdenv -, runtimeShell +{ runtimeShell , symlinkJoin , writeTextFile }: diff --git a/pkgs/misc/emulators/dgen-sdl/default.nix b/pkgs/misc/emulators/dgen-sdl/default.nix index 4a76ee0df026..e56ca12a4e96 100644 --- a/pkgs/misc/emulators/dgen-sdl/default.nix +++ b/pkgs/misc/emulators/dgen-sdl/default.nix @@ -1,7 +1,6 @@ { lib, stdenv , fetchurl , libarchive -, doxygen , SDL }: diff --git a/pkgs/misc/emulators/dolphin-emu/master.nix b/pkgs/misc/emulators/dolphin-emu/master.nix index 06b1221dccb8..d5133c8618d7 100644 --- a/pkgs/misc/emulators/dolphin-emu/master.nix +++ b/pkgs/misc/emulators/dolphin-emu/master.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchFromGitHub, makeDesktopItem, pkg-config, cmake +{ lib, stdenv, fetchFromGitHub, pkg-config, cmake , wrapQtAppsHook, qtbase, bluez, ffmpeg, libao, libGLU, libGL, pcre, gettext , libXrandr, libusb1, lzo, libpthreadstubs, libXext, libXxf86vm, libXinerama , libSM, libXdmcp, readline, openal, udev, libevdev, portaudio, curl, alsa-lib @@ -8,18 +8,7 @@ # - Inputs used for Darwin , CoreBluetooth, ForceFeedback, IOKit, OpenGL, libpng, hidapi }: -let - desktopItem = makeDesktopItem { - name = "dolphin-emu-master"; - exec = "dolphin-emu-master"; - icon = "dolphin-emu"; - comment = "A Wii/GameCube Emulator"; - desktopName = "Dolphin Emulator (master)"; - genericName = "Wii/GameCube Emulator"; - categories = "Game;Emulator;"; - startupNotify = "false"; - }; -in stdenv.mkDerivation rec { +stdenv.mkDerivation rec { pname = "dolphin-emu"; version = "5.0-15260"; @@ -57,6 +46,9 @@ in stdenv.mkDerivation rec { qtWrapperArgs = lib.optionals stdenv.isLinux [ "--prefix LD_LIBRARY_PATH : ${vulkan-loader}/lib" + # https://bugs.dolphin-emu.org/issues/11807 + # The .desktop file should already set this, but Dolphin may be launched in other ways + "--set QT_QPA_PLATFORM xcb" ]; # - Allow Dolphin to use nix-provided libraries instead of building them @@ -68,10 +60,7 @@ in stdenv.mkDerivation rec { CMakeLists.txt ''; - postInstall = '' - cp -r ${desktopItem}/share/applications $out/share - ln -sf $out/bin/dolphin-emu $out/bin/dolphin-emu-master - '' + lib.optionalString stdenv.hostPlatform.isLinux '' + postInstall = lib.optionalString stdenv.hostPlatform.isLinux '' install -D $src/Data/51-usb-device.rules $out/etc/udev/rules.d/51-usb-device.rules ''; diff --git a/pkgs/misc/emulators/mgba/default.nix b/pkgs/misc/emulators/mgba/default.nix index c15c8a0ad76a..be0911aaab10 100644 --- a/pkgs/misc/emulators/mgba/default.nix +++ b/pkgs/misc/emulators/mgba/default.nix @@ -9,7 +9,6 @@ , libedit , libelf , libzip -, copyDesktopItems , makeDesktopItem , minizip , pkg-config diff --git a/pkgs/misc/emulators/pcsxr/0001-libpcsxcore-fix-build-with-ffmpeg-4.patch b/pkgs/misc/emulators/pcsxr/0001-libpcsxcore-fix-build-with-ffmpeg-4.patch new file mode 100644 index 000000000000..0edc6281a7ef --- /dev/null +++ b/pkgs/misc/emulators/pcsxr/0001-libpcsxcore-fix-build-with-ffmpeg-4.patch @@ -0,0 +1,76 @@ +From 351be6b3f2ad10d86ec4ae711db5a1067acc592a Mon Sep 17 00:00:00 2001 +From: Zane van Iperen <zane@zanevaniperen.com> +Date: Sun, 7 Nov 2021 15:17:07 +1000 +Subject: [PATCH] libpcsxcore: fix build with ffmpeg 4 + +--- + libpcsxcore/cdriso.c | 16 ++++++++-------- + 1 file changed, 8 insertions(+), 8 deletions(-) + +diff --git a/libpcsxcore/cdriso.c b/libpcsxcore/cdriso.c +index f89678e..6314482 100644 +--- a/libpcsxcore/cdriso.c ++++ b/libpcsxcore/cdriso.c +@@ -266,14 +266,14 @@ static int decode_compressed_cdda_track(FILE* outfile, const char* infilepath, s + } + + if (!decoded_frame) { +- if (!(decoded_frame = avcodec_alloc_frame())) { ++ if (!(decoded_frame = av_frame_alloc())) { + SysMessage(_(" -> Error allocating audio frame buffer. This track will not be available.")); + avformat_close_input(&inAudioFormat); +- avcodec_free_frame(&decoded_frame); ++ av_frame_free(&decoded_frame); + return 1; // error decoding frame + } + } else { +- avcodec_get_frame_defaults(decoded_frame); ++ av_frame_unref(decoded_frame); + } + len = avcodec_decode_audio4(c, decoded_frame, &got_frame, &avpkt); + if (len > 0 && got_frame) { +@@ -285,7 +285,7 @@ static int decode_compressed_cdda_track(FILE* outfile, const char* infilepath, s + fwrite(decoded_frame->data[0], 1, data_size, outfile); + } + av_free_packet(&avpkt); +- //avcodec_free_frame(&decoded_frame); ++ //av_frame_free(&decoded_frame); + } while (moreFrames >= 0); // TODO: check for possible leaks + + // file will be closed later on, now just flush it +@@ -294,7 +294,7 @@ static int decode_compressed_cdda_track(FILE* outfile, const char* infilepath, s + avformat_close_input(&inAudioFormat); + //avcodec_close(c); + //av_free(c); +- avcodec_free_frame(&decoded_frame); ++ av_frame_free(&decoded_frame); + return 0; + } + #endif +@@ -340,12 +340,12 @@ static int decode_compressed_cdda_track(FILE* outfile, FILE* infile, enum AVCode + while (avpkt.size > 0) { + int got_frame = 0; + if (!decoded_frame) { +- if (!(decoded_frame = avcodec_alloc_frame())) { ++ if (!(decoded_frame = av_frame_alloc())) { + SysPrintf(" -> Error allocating audio frame buffer. Track will not be available."); + return 1; // error decoding frame + } + } else { +- avcodec_get_frame_defaults(decoded_frame); ++ av_frame_unref(decoded_frame); + } + + len = avcodec_decode_audio4(c, decoded_frame, &got_frame, &avpkt); +@@ -383,7 +383,7 @@ static int decode_compressed_cdda_track(FILE* outfile, FILE* infile, enum AVCode + + avcodec_close(c); + av_free(c); +- avcodec_free_frame(&decoded_frame); ++ av_frame_free(&decoded_frame); + return 0; + } + #endif +-- +2.31.1 + diff --git a/pkgs/misc/emulators/pcsxr/default.nix b/pkgs/misc/emulators/pcsxr/default.nix index 099795c63fd1..e3126efe82db 100644 --- a/pkgs/misc/emulators/pcsxr/default.nix +++ b/pkgs/misc/emulators/pcsxr/default.nix @@ -47,6 +47,7 @@ stdenv.mkDerivation rec { }) ./uncompress2.patch + ./0001-libpcsxcore-fix-build-with-ffmpeg-4.patch ]; nativeBuildInputs = [ autoreconfHook intltool pkg-config wrapGAppsHook ]; diff --git a/pkgs/misc/emulators/retroarch/cores.nix b/pkgs/misc/emulators/retroarch/cores.nix index bddabede0a07..715f33421210 100644 --- a/pkgs/misc/emulators/retroarch/cores.nix +++ b/pkgs/misc/emulators/retroarch/cores.nix @@ -1,18 +1,18 @@ -{ lib, stdenv, fetchgit, fetchFromGitHub, fetchFromGitLab, fetchpatch, cmake, pkg-config, makeWrapper, python27, python3, retroarch -, alsa-lib, fluidsynth, curl, hidapi, libGLU, gettext, glib, gtk2, portaudio, SDL, SDL_net, SDL2, SDL2_image, libGL +{ lib, stdenv, fetchgit, fetchFromGitHub, fetchpatch, cmake, pkg-config, makeWrapper, python27, python3, retroarch +, alsa-lib, fluidsynth, curl, hidapi, libGLU, gettext, portaudio, SDL, SDL2, libGL , ffmpeg, pcre, libevdev, libpng, libjpeg, libzip, udev, libvorbis, snappy, which, hexdump -, miniupnpc, sfml, xorg, zlib, nasm, libpcap, boost, icu, openssl +, sfml, xorg, zlib, nasm, libpcap, boost, icu, openssl , buildPackages }: let d2u = lib.replaceChars ["-"] ["_"]; - mkLibRetroCore = { core, src, description, license, broken ? false, ... }@a: + mkLibRetroCore = { core, src, description, license, broken ? false, version ? "2020-03-06", ... }@a: lib.makeOverridable stdenv.mkDerivation ((rec { name = "libretro-${a.core}-${version}"; - version = "2020-03-06"; + inherit version; inherit (a) src; buildInputs = [ zlib ] ++ a.extraBuildInputs or []; @@ -334,10 +334,11 @@ in with lib.licenses; dolphin = mkLibRetroCore { core = "dolphin"; + version = "2021-11-01"; src = fetchRetro { repo = "dolphin"; - rev = "1fbd59911d1b718c142d6448dee3ede98152e395"; - sha256 = "1rymsvs034l1hbxc3w8zi9lhmgka2qaj3jynjy152dccd480nnd4"; + rev = "3370f7693be95c23ac779e5172ff52b7eb2861a7"; + sha256 = "0ylxi25kbv0h2p24aid7z4i0w6drf7h92q02hjdl3h3gni98lk9i"; }; description = "Port of Dolphin to libretro"; license = gpl2Plus; diff --git a/pkgs/misc/emulators/retroarch/default.nix b/pkgs/misc/emulators/retroarch/default.nix index 86ca803d965a..f5db3d427f9e 100644 --- a/pkgs/misc/emulators/retroarch/default.nix +++ b/pkgs/misc/emulators/retroarch/default.nix @@ -14,7 +14,6 @@ , udev ? null , enableNvidiaCgToolkit ? false, nvidia_cg_toolkit ? null , withVulkan ? stdenv.isLinux, vulkan-loader ? null -, fetchurl , wayland , libxkbcommon }: diff --git a/pkgs/misc/emulators/rpcs3/default.nix b/pkgs/misc/emulators/rpcs3/default.nix index bf1dc1c95732..25a6d6befad1 100644 --- a/pkgs/misc/emulators/rpcs3/default.nix +++ b/pkgs/misc/emulators/rpcs3/default.nix @@ -1,6 +1,6 @@ -{ mkDerivation, lib, fetchFromGitHub, cmake, pkg-config, git -, qtbase, qtquickcontrols, openal, glew, vulkan-headers, vulkan-loader, libpng -, ffmpeg, libevdev, libusb1, zlib, curl, python3 +{ gcc11Stdenv, lib, fetchFromGitHub, wrapQtAppsHook, cmake, pkg-config, git +, qtbase, qtquickcontrols, qtmultimedia, openal, glew, vulkan-headers, vulkan-loader, libpng +, ffmpeg, libevdev, libusb1, zlib, curl, wolfssl, python3, pugixml, faudio, flatbuffers , sdl2Support ? true, SDL2 , pulseaudioSupport ? true, libpulseaudio , waylandSupport ? true, wayland @@ -8,21 +8,23 @@ }: let - majorVersion = "0.0.16"; - gitVersion = "12235-a4f4b81e6"; # echo $(git rev-list HEAD --count)-$(git rev-parse --short HEAD) + majorVersion = "0.0.19"; + gitVersion = "12975-37383f421"; in -mkDerivation { +gcc11Stdenv.mkDerivation { pname = "rpcs3"; version = "${majorVersion}-${gitVersion}"; src = fetchFromGitHub { owner = "RPCS3"; repo = "rpcs3"; - rev = "a4f4b81e6b0c00f4c30f9f5f182e5fe56f9fb03c"; + rev = "37383f4217e1c510a543e100d0ca495800b3361a"; fetchSubmodules = true; - sha256 = "1d70nljl1kmpbk50jpjki7dglw1bbxd7x4qzg6nz5np2sdsbpckd"; + sha256 = "1pm1r4j4cdcmr8xmslyv2n6iwcjldnr396by4r6lgf4mdlnwahhm"; }; + passthru.updateScript = ./update.sh; + preConfigure = '' cat > ./rpcs3/git-version.h <<EOF #define RPCS3_GIT_VERSION "${gitVersion}" @@ -38,16 +40,18 @@ mkDerivation { "-DUSE_SYSTEM_LIBPNG=ON" "-DUSE_SYSTEM_FFMPEG=ON" "-DUSE_SYSTEM_CURL=ON" - # NB: Can't use this yet, our CMake doesn't include FindWolfSSL.cmake - #"-DUSE_SYSTEM_WOLFSSL=ON" + "-DUSE_SYSTEM_WOLFSSL=ON" + "-DUSE_SYSTEM_FAUDIO=ON" + "-DUSE_SYSTEM_PUGIXML=ON" + "-DUSE_SYSTEM_FLATBUFFERS=ON" "-DUSE_NATIVE_INSTRUCTIONS=OFF" ]; - nativeBuildInputs = [ cmake pkg-config git ]; + nativeBuildInputs = [ cmake pkg-config git wrapQtAppsHook ]; buildInputs = [ - qtbase qtquickcontrols openal glew vulkan-headers vulkan-loader libpng ffmpeg - libevdev zlib libusb1 curl python3 + qtbase qtquickcontrols qtmultimedia openal glew vulkan-headers vulkan-loader libpng ffmpeg + libevdev zlib libusb1 curl wolfssl python3 pugixml faudio flatbuffers ] ++ lib.optional sdl2Support SDL2 ++ lib.optional pulseaudioSupport libpulseaudio ++ lib.optional alsaSupport alsa-lib @@ -56,7 +60,7 @@ mkDerivation { meta = with lib; { description = "PS3 emulator/debugger"; homepage = "https://rpcs3.net/"; - maintainers = with maintainers; [ abbradar neonfuz ilian ]; + maintainers = with maintainers; [ abbradar neonfuz ilian zane ]; license = licenses.gpl2Only; platforms = [ "x86_64-linux" ]; }; diff --git a/pkgs/misc/emulators/rpcs3/update.sh b/pkgs/misc/emulators/rpcs3/update.sh new file mode 100755 index 000000000000..05be4dfeda1d --- /dev/null +++ b/pkgs/misc/emulators/rpcs3/update.sh @@ -0,0 +1,56 @@ +#!/usr/bin/env nix-shell +#!nix-shell -i bash -p gnused jq nix-prefetch-git curl + +set -eou pipefail + +ROOT="$(dirname "$(readlink -f "$0")")" +if [[ ! "$(basename $ROOT)" == "rpcs3" || ! -f "$ROOT/default.nix" ]]; then + echo "ERROR: Not in the rpcs3 folder" + exit 1 +fi + +if [[ ! -v GITHUB_TOKEN ]]; then + echo "ERROR: \$GITHUB_TOKEN not set" + exit 1 +fi + +PAYLOAD=$(jq -cn --rawfile query /dev/stdin '{"query": $query}' <<EOF | curl -s -H "Authorization: bearer $GITHUB_TOKEN" -d '@-' https://api.github.com/graphql +{ + repository(owner: "RPCS3", name: "rpcs3") { + branch: ref(qualifiedName: "refs/heads/master") { + target { + oid + ... on Commit { + history { + totalCount + } + } + } + } + + tag: refs(refPrefix: "refs/tags/", first: 1, orderBy: {field: TAG_COMMIT_DATE, direction: DESC}) { + nodes { + name + } + } + } +} +EOF +) +RPCS3_COMMIT=$(jq -r .data.repository.branch.target.oid <<< "$PAYLOAD") +RPCS3_MAJORVER=$(jq -r .data.repository.tag.nodes[0].name <<< "$PAYLOAD" | sed 's/^v//g') +RPCS3_COUNT=$(jq -r .data.repository.branch.target.history.totalCount <<< "$PAYLOAD") + +RPCS3_GITVER="$RPCS3_COUNT-${RPCS3_COMMIT::9}" +echo "INFO: Latest commit is $RPCS3_COMMIT" +echo "INFO: Latest version is $RPCS3_MAJORVER-$RPCS3_GITVER" + +RPCS3_SHA256=$(nix-prefetch-git --quiet --fetch-submodules https://github.com/RPCS3/rpcs3.git "$RPCS3_COMMIT" | jq -r .sha256) +echo "INFO: SHA256 is $RPCS3_SHA256" + +sed -i -E \ + -e "s/majorVersion\s+.+$/majorVersion = \"${RPCS3_MAJORVER}\";/g" \ + -e "s/gitVersion\s+.+$/gitVersion = \"${RPCS3_GITVER}\";/g" \ + -e "s/rev\s*=\s*\"[a-z0-9]+\";$/rev = \"${RPCS3_COMMIT}\";/g" \ + -e "s/sha256\s*=\s*\"[a-z0-9]+\";$/sha256 = \"${RPCS3_SHA256}\";/g" \ + "$ROOT/default.nix" diff --git a/pkgs/misc/emulators/sameboy/default.nix b/pkgs/misc/emulators/sameboy/default.nix index db300274f908..f1e41e77eafd 100644 --- a/pkgs/misc/emulators/sameboy/default.nix +++ b/pkgs/misc/emulators/sameboy/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "sameboy"; - version = "0.14.5"; + version = "0.14.6"; src = fetchFromGitHub { owner = "LIJI32"; repo = "SameBoy"; rev = "v${version}"; - sha256 = "sha256-o2aH9rfga4f4yrf6r01wnrC0foYtD5EwdKFUPf2KGWM="; + sha256 = "sha256-KNAT36XLVtlFT3AKPTqP+GvgfOj0Y2SQ9PNVQv2HVwY="; }; enableParallelBuilding = true; diff --git a/pkgs/misc/emulators/wine/sources.nix b/pkgs/misc/emulators/wine/sources.nix index 3c7d5c29770f..647185c8b9ba 100644 --- a/pkgs/misc/emulators/wine/sources.nix +++ b/pkgs/misc/emulators/wine/sources.nix @@ -19,14 +19,14 @@ in rec { ## see http://wiki.winehq.org/Gecko gecko32 = fetchurl rec { - version = "2.47.1"; + version = "2.47.2"; url = "https://dl.winehq.org/wine/wine-gecko/${version}/wine-gecko-${version}-x86.msi"; - sha256 = "0ld03pjm65xkpgqkvfsmk6h9krjsqbgxw4b8rvl2fj20j8l0w2zh"; + sha256 = "07d6nrk2g0614kvwdjym1wq21d2bwy3pscwikk80qhnd6rrww875"; }; gecko64 = fetchurl rec { - version = "2.47.1"; + version = "2.47.2"; url = "https://dl.winehq.org/wine/wine-gecko/${version}/wine-gecko-${version}-x86_64.msi"; - sha256 = "0jj7azmpy07319238g52a8m4nkdwj9g010i355ykxnl8m5wjwcb9"; + sha256 = "0iffhvdawc499nbn4k99k33cr7g8sdfcvq8k3z1g6gw24h87d5h5"; }; ## see http://wiki.winehq.org/Mono diff --git a/pkgs/misc/emulators/wine/winetricks.nix b/pkgs/misc/emulators/wine/winetricks.nix index cfde64fc33ac..26c141a71e74 100644 --- a/pkgs/misc/emulators/wine/winetricks.nix +++ b/pkgs/misc/emulators/wine/winetricks.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, callPackage, wine, perl, which, coreutils, zenity, curl +{ lib, stdenv, callPackage, perl, which, coreutils, zenity, curl , cabextract, unzip, p7zip, gnused, gnugrep, bash } : stdenv.mkDerivation rec { @@ -9,9 +9,9 @@ stdenv.mkDerivation rec { buildInputs = [ perl which ]; # coreutils is for sha1sum - pathAdd = lib.concatMapStringsSep ":" (x: x + "/bin") - (lib.filter (x: x != null) - [ wine perl which coreutils zenity curl cabextract unzip p7zip gnused gnugrep bash ]); + pathAdd = lib.makeBinPath [ + perl which coreutils zenity curl cabextract unzip p7zip gnused gnugrep bash + ]; makeFlags = [ "PREFIX=$(out)" ]; diff --git a/pkgs/misc/ghostscript/test-corpus-render.nix b/pkgs/misc/ghostscript/test-corpus-render.nix index 544392090ff7..97a2a834232c 100644 --- a/pkgs/misc/ghostscript/test-corpus-render.nix +++ b/pkgs/misc/ghostscript/test-corpus-render.nix @@ -1,5 +1,4 @@ -{ lib -, stdenv +{ stdenv , fetchgit , ghostscript }: diff --git a/pkgs/misc/gnash/0001-fix-build-with-ffmepg-4.patch b/pkgs/misc/gnash/0001-fix-build-with-ffmepg-4.patch new file mode 100644 index 000000000000..f6316ae972fd --- /dev/null +++ b/pkgs/misc/gnash/0001-fix-build-with-ffmepg-4.patch @@ -0,0 +1,57 @@ +From cb13c20332526a4db99e7fd0818b9a75829affad Mon Sep 17 00:00:00 2001 +From: Zane van Iperen <zane@zanevaniperen.com> +Date: Sun, 7 Nov 2021 15:36:02 +1000 +Subject: [PATCH] fix build with ffmepg 4 + +--- + libmedia/ffmpeg/MediaHandlerFfmpeg.cpp | 2 +- + libmedia/ffmpeg/MediaParserFfmpeg.cpp | 6 +++--- + 2 files changed, 4 insertions(+), 4 deletions(-) + +diff --git a/libmedia/ffmpeg/MediaHandlerFfmpeg.cpp b/libmedia/ffmpeg/MediaHandlerFfmpeg.cpp +index 127aaaa..216d96b 100644 +--- a/libmedia/ffmpeg/MediaHandlerFfmpeg.cpp ++++ b/libmedia/ffmpeg/MediaHandlerFfmpeg.cpp +@@ -149,7 +149,7 @@ MediaHandlerFfmpeg::cameraNames(std::vector<std::string>& /*names*/) const + size_t + MediaHandlerFfmpeg::getInputPaddingSize() const + { +- return FF_INPUT_BUFFER_PADDING_SIZE; ++ return AV_INPUT_BUFFER_PADDING_SIZE; + } + + } // gnash.media.ffmpeg namespace +diff --git a/libmedia/ffmpeg/MediaParserFfmpeg.cpp b/libmedia/ffmpeg/MediaParserFfmpeg.cpp +index 9ceb8b0..a27ca56 100644 +--- a/libmedia/ffmpeg/MediaParserFfmpeg.cpp ++++ b/libmedia/ffmpeg/MediaParserFfmpeg.cpp +@@ -64,7 +64,7 @@ AVInputFormat* + MediaParserFfmpeg::probeStream() + { + const size_t probeSize = 4096; +- const size_t bufSize = probeSize + FF_INPUT_BUFFER_PADDING_SIZE; ++ const size_t bufSize = probeSize + AV_INPUT_BUFFER_PADDING_SIZE; + + std::unique_ptr<std::uint8_t[]> buffer(new std::uint8_t[bufSize]); + +@@ -173,7 +173,7 @@ MediaParserFfmpeg::parseVideoFrame(AVPacket& packet) + + // TODO: We might avoid the copy as a whole by making EncodedVideoFrame + // virtual. +- size_t allocSize = packet.size + FF_INPUT_BUFFER_PADDING_SIZE; ++ size_t allocSize = packet.size + AV_INPUT_BUFFER_PADDING_SIZE; + std::uint8_t* data = new std::uint8_t[allocSize]; + std::copy(packet.data, packet.data+packet.size, data); + std::unique_ptr<EncodedVideoFrame> frame(new EncodedVideoFrame(data, packet.size, 0, timestamp)); +@@ -221,7 +221,7 @@ MediaParserFfmpeg::parseAudioFrame(AVPacket& packet) + + // TODO: We might avoid the copy as a whole by making EncodedAudioFrame + // virtual. +- size_t allocSize = packet.size + FF_INPUT_BUFFER_PADDING_SIZE; ++ size_t allocSize = packet.size + AV_INPUT_BUFFER_PADDING_SIZE; + std::uint8_t* data = new std::uint8_t[allocSize]; + std::copy(packet.data, packet.data+packet.size, data); + +-- +2.31.1 + diff --git a/pkgs/misc/gnash/default.nix b/pkgs/misc/gnash/default.nix index 9f5f022b8538..fc7148b40489 100644 --- a/pkgs/misc/gnash/default.nix +++ b/pkgs/misc/gnash/default.nix @@ -16,7 +16,7 @@ , enableQt ? false, qt4 ? null # media -, enableFFmpeg ? true, ffmpeg_2 ? null +, enableFFmpeg ? true, ffmpeg ? null # misc , enableJemalloc ? true, jemalloc ? null @@ -55,7 +55,7 @@ assert enableSDL -> available SDL; assert enableQt -> available qt4; # media libraries -assert enableFFmpeg -> available ffmpeg_2 ; +assert enableFFmpeg -> available ffmpeg ; # misc assert enableJemalloc -> available jemalloc; @@ -88,7 +88,7 @@ stdenv.mkDerivation { ] ++ optional enableAGG agg ++ optional enableCairo cairo ++ optional enableQt qt4 - ++ optional enableFFmpeg ffmpeg_2 + ++ optional enableFFmpeg ffmpeg ++ optional enableJemalloc jemalloc ++ optional enableHwAccel [ libGL libGLU ] ++ optionals enableOpenGL [ libGL libGLU ] @@ -107,6 +107,8 @@ stdenv.mkDerivation { url = "https://savannah.gnu.org/file/0001-Do-not-depend-on-pangox.patch?file_id=48366"; sha256 = "02x7sl5zwd1ld2n4b6bp16c5gk91qsap0spfbb5iwpglq3galv2l"; }) + + ./0001-fix-build-with-ffmepg-4.patch ]; configureFlags = with lib; [ diff --git a/pkgs/misc/jackaudio/default.nix b/pkgs/misc/jackaudio/default.nix index 7474a304f032..92574231549e 100644 --- a/pkgs/misc/jackaudio/default.nix +++ b/pkgs/misc/jackaudio/default.nix @@ -26,14 +26,14 @@ let optLibopus = shouldUsePkg libopus; in stdenv.mkDerivation rec { - name = "${prefix}jack2-${version}"; - version = "1.9.17"; + pname = "${prefix}jack2"; + version = "1.9.19"; src = fetchFromGitHub { owner = "jackaudio"; repo = "jack2"; rev = "v${version}"; - sha256 = "sha256-T6UJpLsXrsIL3HaChfVP52w0v9DCs/sJqty2/kAWNfE="; + sha256 = "01s8i64qczxqawgrzrw19asaqmcspf5l2h3203xzg56wnnhhzcw7"; }; nativeBuildInputs = [ pkg-config python makeWrapper wafHook ]; diff --git a/pkgs/misc/logging/beats/7.x.nix b/pkgs/misc/logging/beats/7.x.nix index 99a79fecedc5..b8b82ed4b308 100644 --- a/pkgs/misc/logging/beats/7.x.nix +++ b/pkgs/misc/logging/beats/7.x.nix @@ -8,10 +8,10 @@ let beat = package: extraArgs: buildGoModule (rec { owner = "elastic"; repo = "beats"; rev = "v${version}"; - sha256 = "sha256-zr0a0LBR4G9okS2pUixDYtYZ0yCp4G6j08jx/zlIKOA="; + sha256 = "0gjyzprgj9nskvlkm2bf125b7qn3608llz4kh1fyzsvrw6zb7sm8"; }; - vendorSha256 = "sha256-xmw432vY1T2EixkDcXdGrnMdc8fYOI4R2lEjbkav3JQ="; + vendorSha256 = "04cwf96fh60ld3ndjzzssgirc9ssb53yq71j6ksx36m3y1x7fq9c"; subPackages = [ package ]; diff --git a/pkgs/misc/present/default.nix b/pkgs/misc/present/default.nix new file mode 100644 index 000000000000..e087db6f8d2e --- /dev/null +++ b/pkgs/misc/present/default.nix @@ -0,0 +1,31 @@ +{ lib, python3Packages }: + +python3Packages.buildPythonPackage rec { + pname = "present"; + version = "0.6.0"; + + src = python3Packages.fetchPypi { + inherit pname version; + sha256 = "sha256-l9W5L4LD9qRo3rLBkgd2I/aDaj+ucib5UYg+X4RYg6c="; + }; + + propagatedBuildInputs = with python3Packages; [ + click + pyyaml + pyfiglet + asciimatics + mistune_2_0 + ]; + + pythonImportsCheck = [ "present" ]; + + # TypeError: don't know how to make test from: 0.6.0 + doCheck = false; + + meta = with lib; { + description = "A terminal-based presentation tool with colors and effects."; + homepage = "https://github.com/vinayak-mehta/present"; + license = licenses.asl20; + maintainers = with maintainers; [ legendofmiracles ]; + }; +} diff --git a/pkgs/misc/pylode/default.nix b/pkgs/misc/pylode/default.nix index 18e112346912..b37ff2366694 100644 --- a/pkgs/misc/pylode/default.nix +++ b/pkgs/misc/pylode/default.nix @@ -1,11 +1,14 @@ { lib -, python3Packages +, python3 , fetchFromGitHub }: -python3Packages.buildPythonApplication rec { - pname = "pyLODE"; +python3.pkgs.buildPythonApplication rec { + pname = "pylode"; version = "2.12.0"; + format = "setuptools"; + + disabled = python3.pythonOlder "3.6"; src = fetchFromGitHub { owner = "RDFLib"; @@ -14,22 +17,32 @@ python3Packages.buildPythonApplication rec { sha256 = "sha256-X/YiJduAJNiceIrlCFwD2PFiMn3HVlzr9NzyDvYcql8="; }; - propagatedBuildInputs = with python3Packages; [ - python-dateutil + propagatedBuildInputs = with python3.pkgs; [ + beautifulsoup4 falcon - gunicorn - isodate jinja2 markdown + python-dateutil rdflib requests - six - beautifulsoup4 + ]; + + postPatch = '' + substituteInPlace requirements.txt \ + --replace "rdflib==6.0.0" "rdflib" + ''; + + # Path issues with the tests + doCheck = false; + + pythonImportsCheck = [ + "pylode" ]; meta = with lib; { - description = "An OWL ontology documentation tool using Python and templating, based on LODE"; + description = "OWL ontology documentation tool using Python and templating, based on LODE"; homepage = "https://github.com/RDFLib/pyLODE"; + # Next release will move to BSD3 license = licenses.gpl3Only; maintainers = with maintainers; [ koslambrou ]; }; diff --git a/pkgs/misc/scrcpy/default.nix b/pkgs/misc/scrcpy/default.nix index 755d778e545e..4ffbee147158 100644 --- a/pkgs/misc/scrcpy/default.nix +++ b/pkgs/misc/scrcpy/default.nix @@ -2,7 +2,6 @@ , meson , ninja , pkg-config -, fetchpatch , platform-tools , ffmpeg diff --git a/pkgs/misc/screensavers/pipes-rs/default.nix b/pkgs/misc/screensavers/pipes-rs/default.nix index 22443dc11732..3e2f4179d8ed 100644 --- a/pkgs/misc/screensavers/pipes-rs/default.nix +++ b/pkgs/misc/screensavers/pipes-rs/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "pipes-rs"; - version = "1.4.5"; + version = "1.4.6"; src = fetchFromGitHub { owner = "lhvy"; repo = pname; rev = "v${version}"; - sha256 = "sha256-BC6QqSZ7siDVSO8oOH7DimTe6RFnCBygmvtPrQgsC/Q="; + sha256 = "sha256-HtwUYYQqldEtE9VkQAJscW8jp/u8Cb4/G5d2uqanOjI="; }; - cargoSha256 = "sha256-nctkc2vDE7WXm84g/EkGKc1/ju/Xy9d/nc8NPIVFl58="; + cargoSha256 = "sha256-o/aPB0jfZfg2sDkgCBlLlCK3gbjjHZeiG8OxRXKXJyY="; doInstallCheck = true; diff --git a/pkgs/misc/screensavers/xscreensaver/default.nix b/pkgs/misc/screensavers/xscreensaver/default.nix index 81f37b0bc41a..b90f75f6a042 100644 --- a/pkgs/misc/screensavers/xscreensaver/default.nix +++ b/pkgs/misc/screensavers/xscreensaver/default.nix @@ -37,6 +37,9 @@ stdenv.mkDerivation rec { "--with-app-defaults=${placeholder "out"}/share/xscreensaver/app-defaults" ]; + # "marbling" has NEON code that mixes signed and unsigned vector types + NIX_CFLAGS_COMPILE = lib.optional (with stdenv.hostPlatform; isAarch64 || isAarch32) "-flax-vector-conversions"; + postInstall = '' for bin in $out/bin/*; do wrapProgram "$bin" \ diff --git a/pkgs/misc/vim-plugins/aliases.nix b/pkgs/misc/vim-plugins/aliases.nix index b880c15d790a..8f3308a122be 100644 --- a/pkgs/misc/vim-plugins/aliases.nix +++ b/pkgs/misc/vim-plugins/aliases.nix @@ -32,7 +32,7 @@ let deprecations = lib.mapAttrs (old: info: throw "${old} was renamed to ${info.new} on ${info.date}. Please update to ${info.new}." - ) (builtins.fromJSON (builtins.readFile ./deprecated.json)); + ) (lib.importJSON ./deprecated.json); in mapAliases (with prev; { diff --git a/pkgs/misc/vim-plugins/generated.nix b/pkgs/misc/vim-plugins/generated.nix index e4df5a8446e4..f1f61212f24d 100644 --- a/pkgs/misc/vim-plugins/generated.nix +++ b/pkgs/misc/vim-plugins/generated.nix @@ -41,24 +41,24 @@ final: prev: aerial-nvim = buildVimPluginFrom2Nix { pname = "aerial.nvim"; - version = "2021-10-07"; + version = "2021-10-23"; src = fetchFromGitHub { owner = "stevearc"; repo = "aerial.nvim"; - rev = "eeae1b63602ac360d24cc6a22376fa103d0228cc"; - sha256 = "1mfqqkvijpc89d2szi30jry5mrzlgrnqvy7h0qkldgd7r3476vhs"; + rev = "0430d20508157d97fac4e14400b648346a7cba94"; + sha256 = "0viqw73iyqv2vzskrfj9mfajvk4hslsl8w707km11509mv473d7h"; }; meta.homepage = "https://github.com/stevearc/aerial.nvim/"; }; agda-vim = buildVimPluginFrom2Nix { pname = "agda-vim"; - version = "2021-10-02"; + version = "2021-10-28"; src = fetchFromGitHub { owner = "derekelkins"; repo = "agda-vim"; - rev = "a25cbab0cb60b57b734a2dd9248675724963d63b"; - sha256 = "0yxsxraszcpfb11b2lmgjhz947lmrs5b6r8gy1swi1678w8rbifq"; + rev = "4a0f475aaef756702222bdd5b01e25f814f5691f"; + sha256 = "0d4gwgdy4y52gycz33y5ar9rj0r2y6bkjnyns3br2iy0x4rzghff"; }; meta.homepage = "https://github.com/derekelkins/agda-vim/"; }; @@ -77,12 +77,12 @@ final: prev: ale = buildVimPluginFrom2Nix { pname = "ale"; - version = "2021-10-24"; + version = "2021-11-12"; src = fetchFromGitHub { owner = "dense-analysis"; repo = "ale"; - rev = "92f08b5af2f6316312c95c5160c6e02b76370e04"; - sha256 = "17p8bbqqsjw17b50p8pxrv30mf8n6495gwzvlfpj51yz2vvk66wv"; + rev = "76c2293e68a6cad3b192062743d25b8daa082205"; + sha256 = "1fcc3qy425fp5qrhcgi8gagl2b33wa5m8r9xzqqawk47rkpjx5d0"; }; meta.homepage = "https://github.com/dense-analysis/ale/"; }; @@ -113,12 +113,12 @@ final: prev: ansible-vim = buildVimPluginFrom2Nix { pname = "ansible-vim"; - version = "2021-10-07"; + version = "2021-11-08"; src = fetchFromGitHub { owner = "pearofducks"; repo = "ansible-vim"; - rev = "c84f8bb203c49d9da28e4ea7a32d951ccde1d40f"; - sha256 = "1ii58rvc8mvv33kbfnn7b66mpf08hn3vm2swjgaaw4dwvzffzi71"; + rev = "469e55b101d85ff82687d975349b356b362194a6"; + sha256 = "0z2iqb974drs0nc3cxk32z5xlbdl8bgbsc8564sz13ayqbdms4nk"; }; meta.homepage = "https://github.com/pearofducks/ansible-vim/"; }; @@ -197,12 +197,12 @@ final: prev: aurora = buildVimPluginFrom2Nix { pname = "aurora"; - version = "2021-10-13"; + version = "2021-11-06"; src = fetchFromGitHub { owner = "ray-x"; repo = "aurora"; - rev = "6ea04b2b1a01e2c00e1b126af2b43a15c2fab441"; - sha256 = "1lzv98cjqla7py5xh4qk7p89qqlfadyspj20vfblv9gsxnhl5acy"; + rev = "ea1b3e8398acde2659e4430b17f3084c33829fcb"; + sha256 = "1xwhp8fzasiyym5yqnhdfzrbh59vjf5jl1cc10xrf00kv2l2kvwx"; }; meta.homepage = "https://github.com/ray-x/aurora/"; }; @@ -233,12 +233,12 @@ final: prev: auto-session = buildVimPluginFrom2Nix { pname = "auto-session"; - version = "2021-10-24"; + version = "2021-10-30"; src = fetchFromGitHub { owner = "rmagatti"; repo = "auto-session"; - rev = "2d25cc543e828acddaa54ad4129553477e2ed22f"; - sha256 = "0hhq8ajb9biki2kbcc0vdwbgpck0fcaf7xjdi1j8jglsmqk4xw1h"; + rev = "5f2a9d7e45133be33a1dae3580089e257824a907"; + sha256 = "1gm6f9pnvv1kghxsm3082vxng81jg2srfnwczjik2m2m9bypdd4s"; }; meta.homepage = "https://github.com/rmagatti/auto-session/"; }; @@ -351,6 +351,18 @@ final: prev: meta.homepage = "https://github.com/euclidianAce/BetterLua.vim/"; }; + blueballs-neovim = buildVimPluginFrom2Nix { + pname = "blueballs-neovim"; + version = "2021-09-09"; + src = fetchFromGitHub { + owner = "blueballs-theme"; + repo = "blueballs-neovim"; + rev = "e0d73d553f663a12539682d89130d71df2db9099"; + sha256 = "02x374wgbw3fmqlyrlxspf1n3ajik5y53g232r44y6093ly8wsw1"; + }; + meta.homepage = "https://github.com/blueballs-theme/blueballs-neovim/"; + }; + bracey-vim = buildVimPluginFrom2Nix { pname = "bracey.vim"; version = "2021-08-20"; @@ -401,12 +413,12 @@ final: prev: bufferline-nvim = buildVimPluginFrom2Nix { pname = "bufferline.nvim"; - version = "2021-10-21"; + version = "2021-11-01"; src = fetchFromGitHub { owner = "akinsho"; repo = "bufferline.nvim"; - rev = "58e8d9b7c9aaf603f1093f808628b5a8f03493af"; - sha256 = "19l7sh0xfxg4lra1zww3msawy3a4y74b3xr4qrjais8wm8wc4nb4"; + rev = "782fab8a2352e872dc991c42f806dae18e848b2d"; + sha256 = "0j5r0cgcdgnqdd0fd6y9b0nh301xyb6b2vgqc34rdk30gam7h5d1"; }; meta.homepage = "https://github.com/akinsho/bufferline.nvim/"; }; @@ -461,12 +473,12 @@ final: prev: chadtree = buildVimPluginFrom2Nix { pname = "chadtree"; - version = "2021-10-25"; + version = "2021-11-12"; src = fetchFromGitHub { owner = "ms-jpq"; repo = "chadtree"; - rev = "3693a1aeda4ba419d4a849d1955d6b4c39a3b565"; - sha256 = "0jsjk145y5j83l48fm6n6bvyvnjzm7l50w8b6sy9h06kzs0wh2ic"; + rev = "ba07c14d05f08853a1055c06f71ce5dec60a669f"; + sha256 = "1ncac73d20sh0d8z0cbp5bv6xy98bm1zpld0164rdw626bmh5gx3"; }; meta.homepage = "https://github.com/ms-jpq/chadtree/"; }; @@ -569,12 +581,12 @@ final: prev: cmp-buffer = buildVimPluginFrom2Nix { pname = "cmp-buffer"; - version = "2021-09-02"; + version = "2021-11-10"; src = fetchFromGitHub { owner = "hrsh7th"; repo = "cmp-buffer"; - rev = "5dde5430757696be4169ad409210cf5088554ed6"; - sha256 = "0fdywbv4b0z1kjnkx9vxzvc4cvjyp9mnyv4xi14zndwjgf1gmcwl"; + rev = "2d85e76c725a389b72067f86fc3c65f3868b9a59"; + sha256 = "0lvx58nchrl08jjp2gvyfrxkqdqnyi97zj86nnx184vnx8a5qcqh"; }; meta.homepage = "https://github.com/hrsh7th/cmp-buffer/"; }; @@ -591,6 +603,18 @@ final: prev: meta.homepage = "https://github.com/hrsh7th/cmp-calc/"; }; + cmp-cmdline = buildVimPluginFrom2Nix { + pname = "cmp-cmdline"; + version = "2021-11-08"; + src = fetchFromGitHub { + owner = "hrsh7th"; + repo = "cmp-cmdline"; + rev = "0ca73c3a50b72c2ca168d8904b39aba34d0c4227"; + sha256 = "1777rv9mh3bar8lp5i4af7kip5j3s4ib8a83b67clga8pcdjla4d"; + }; + meta.homepage = "https://github.com/hrsh7th/cmp-cmdline/"; + }; + cmp-conjure = buildVimPluginFrom2Nix { pname = "cmp-conjure"; version = "2021-10-09"; @@ -629,16 +653,28 @@ final: prev: cmp-nvim-lsp = buildVimPluginFrom2Nix { pname = "cmp-nvim-lsp"; - version = "2021-10-17"; + version = "2021-11-10"; src = fetchFromGitHub { owner = "hrsh7th"; repo = "cmp-nvim-lsp"; - rev = "accbe6d97548d8d3471c04d512d36fa61d0e4be8"; - sha256 = "1dqx6yrd60x9ncjnpja87wv5zgnij7qmzbyh5xfyslk67c0i6mwm"; + rev = "134117299ff9e34adde30a735cd8ca9cf8f3db81"; + sha256 = "1jnspl08ilz9ggkdddk0saxp3wzf05lll5msdfb4770q3bixddwc"; }; meta.homepage = "https://github.com/hrsh7th/cmp-nvim-lsp/"; }; + cmp-nvim-lsp-document-symbol = buildVimPluginFrom2Nix { + pname = "cmp-nvim-lsp-document-symbol"; + version = "2021-10-28"; + src = fetchFromGitHub { + owner = "hrsh7th"; + repo = "cmp-nvim-lsp-document-symbol"; + rev = "29d12e55cf49ee07b829114ad39b161cad2544ab"; + sha256 = "0w4m34467j3cg4dj69r12115p5k1i2lbjzmwx5hmd5x6xzb5qycb"; + }; + meta.homepage = "https://github.com/hrsh7th/cmp-nvim-lsp-document-symbol/"; + }; + cmp-nvim-lua = buildVimPluginFrom2Nix { pname = "cmp-nvim-lua"; version = "2021-10-11"; @@ -677,12 +713,12 @@ final: prev: cmp-path = buildVimPluginFrom2Nix { pname = "cmp-path"; - version = "2021-10-22"; + version = "2021-11-10"; src = fetchFromGitHub { owner = "hrsh7th"; repo = "cmp-path"; - rev = "387b740fc1a038a434f18f7d7a66fc6c52a3de35"; - sha256 = "0xxfdswrl2lg9drvaqrdqj2djp0ifnr5v6x271nk4d9m46cr6x4q"; + rev = "98ded32b9c4d95aa95af70b9979b767f39073f0e"; + sha256 = "1axx401sikh9ylji3d6cmgn4xsrzzfmlc1akfv1q709chv0a6r2h"; }; meta.homepage = "https://github.com/hrsh7th/cmp-path/"; }; @@ -713,48 +749,48 @@ final: prev: cmp-treesitter = buildVimPluginFrom2Nix { pname = "cmp-treesitter"; - version = "2021-10-24"; + version = "2021-10-31"; src = fetchFromGitHub { owner = "ray-x"; repo = "cmp-treesitter"; - rev = "0ba0a99b43420789740642f85e3fd076f1259418"; - sha256 = "030s5qgl6fg73w16w6p7ss767w2hrsfhq7nf6nsr4hibc07wj9m9"; + rev = "fb1964fa6347467e1685507c4c9f56b25c266fb5"; + sha256 = "196lk52ljsf5msgf1kxslgb5agk6dd9nwz4ms92wz2jg3qlnmbjm"; }; meta.homepage = "https://github.com/ray-x/cmp-treesitter/"; }; cmp-under-comparator = buildVimPluginFrom2Nix { pname = "cmp-under-comparator"; - version = "2021-10-22"; + version = "2021-11-11"; src = fetchFromGitHub { owner = "lukas-reineke"; repo = "cmp-under-comparator"; - rev = "69e88636a3f7a1630a6e1199b4039a5f110caf81"; - sha256 = "1af4l8vf66sz4vhyzlnkrg0hpwx2f7096g9rszralxq0nad1i12d"; + rev = "6857f10272c3cfe930cece2afa2406e1385bfef8"; + sha256 = "18kcxl9rg6qrg5wv6bb0hv0sjafspjhy57irf8gyaa66svwmgxmh"; }; meta.homepage = "https://github.com/lukas-reineke/cmp-under-comparator/"; }; cmp-vsnip = buildVimPluginFrom2Nix { pname = "cmp-vsnip"; - version = "2021-08-25"; + version = "2021-11-10"; src = fetchFromGitHub { owner = "hrsh7th"; repo = "cmp-vsnip"; - rev = "1588c35bf8f637e8f5287477f31895781858f970"; - sha256 = "0q3z0f7d53cbqidx8qd3z48b46a83l5ay54iw525w22j1kki3aaw"; + rev = "0abfa1860f5e095a07c477da940cfcb0d273b700"; + sha256 = "1vhw2qx8284bskivc2jyijl93g1b1z9hzzbq2l9b4aw6r23frbgc"; }; meta.homepage = "https://github.com/hrsh7th/cmp-vsnip/"; }; cmp_luasnip = buildVimPluginFrom2Nix { pname = "cmp_luasnip"; - version = "2021-10-18"; + version = "2021-10-28"; src = fetchFromGitHub { owner = "saadparwaiz1"; repo = "cmp_luasnip"; - rev = "0347dddd1d88484aadbc39a34c98567708e4b7e0"; - sha256 = "1kiwav1gds9xcibm21vmvnpfkyvgqrjwwrbcm1bb9dvq82nvd1b5"; + rev = "16832bb50e760223a403ffa3042859845dd9ef9d"; + sha256 = "0hc6flnvdgd7a93p8y9msp92bc1r10nh00wvw9msr40442m8viqc"; }; meta.homepage = "https://github.com/saadparwaiz1/cmp_luasnip/"; }; @@ -785,24 +821,24 @@ final: prev: coc-fzf = buildVimPluginFrom2Nix { pname = "coc-fzf"; - version = "2021-10-23"; + version = "2021-11-11"; src = fetchFromGitHub { owner = "antoinemadec"; repo = "coc-fzf"; - rev = "9fc34a66e6744f52769bb0b95cba851723964faf"; - sha256 = "0lhvaygicayqpabgmdya6fq7yybch5nd7myjydmcdnpmivzh7mk8"; + rev = "60828294b9ba846c78893389d4772021043d2fa1"; + sha256 = "1y7rslksa558fdh3m4m626vpvs424pvxkkk70mr57is47cminm3m"; }; meta.homepage = "https://github.com/antoinemadec/coc-fzf/"; }; coc-lua = buildVimPluginFrom2Nix { pname = "coc-lua"; - version = "2021-10-16"; + version = "2021-11-09"; src = fetchFromGitHub { owner = "josa42"; repo = "coc-lua"; - rev = "ee767ef4db8e5606c8c4edc304a75053ac943804"; - sha256 = "1rv47115xbbsnkzs18bp60advhd3mz16w1aigfxk30cmajfydwvg"; + rev = "9672c9cde3cce32720fafbdb65618d817b7022d8"; + sha256 = "1y35xqzd17c8cvlrqfa10lninql2xkkkgy40wl1bwfzl5awk9rm7"; }; meta.homepage = "https://github.com/josa42/coc-lua/"; }; @@ -857,12 +893,12 @@ final: prev: colorbuddy-nvim = buildVimPluginFrom2Nix { pname = "colorbuddy.nvim"; - version = "2021-04-16"; + version = "2021-10-25"; src = fetchFromGitHub { owner = "tjdevries"; repo = "colorbuddy.nvim"; - rev = "87c80e3f4a590d0387d9b128d1f1fc456759408a"; - sha256 = "19gfmyhmwpr8gi03w44zm056zrzaj74hplpl4psy9mylvb0ghf0k"; + rev = "e231f7ebb9b81b082adb0d312eb8817b2c5d2505"; + sha256 = "0j87harnc1j997rq1qwh0iys89r6mj1vaskdkbxf1nk2l6gjs6n4"; }; meta.homepage = "https://github.com/tjdevries/colorbuddy.nvim/"; }; @@ -906,12 +942,12 @@ final: prev: comment-nvim = buildVimPluginFrom2Nix { pname = "comment.nvim"; - version = "2021-10-24"; + version = "2021-11-05"; src = fetchFromGitHub { owner = "numtostr"; repo = "comment.nvim"; - rev = "1e01f4556be5472ddfbc9d9cb42bd9b958d4a24e"; - sha256 = "1d6w13mw8sb0c5bkg3nn8snjw7vrnjhr5pmgmbx4pv6g8yqr2zj4"; + rev = "620445b87a0d1640fac6991f9c3338af8dec1884"; + sha256 = "1mw6862njjfpl3h4kaq9vkl1gddi4bdah2kzrijgq0gykiqkjpks"; }; meta.homepage = "https://github.com/numtostr/comment.nvim/"; }; @@ -966,12 +1002,12 @@ final: prev: compe-tmux = buildVimPluginFrom2Nix { pname = "compe-tmux"; - version = "2021-09-16"; + version = "2021-10-30"; src = fetchFromGitHub { owner = "andersevenrud"; repo = "compe-tmux"; - rev = "b80706c31711db5ef0fab9e141733a7e95203d22"; - sha256 = "1874rzhxylqqkbv7sdkfq5dpbpqzpwf0r90yx3gxa4mipnjd22sm"; + rev = "ef911e2ee6f7d537ae5f5090c84112ce747c6eb5"; + sha256 = "1xqbhbcahgpwhm9zl8pxxv7qkicl68qd4acvm5d0k0xg1zg672rq"; }; meta.homepage = "https://github.com/andersevenrud/compe-tmux/"; }; @@ -1098,12 +1134,12 @@ final: prev: Coqtail = buildVimPluginFrom2Nix { pname = "Coqtail"; - version = "2021-10-25"; + version = "2021-11-11"; src = fetchFromGitHub { owner = "whonore"; repo = "Coqtail"; - rev = "8afb9c8b78fa22913179e35a5711d52ea323e182"; - sha256 = "1g0zqfvr70bg8i07rpy1bdgyzsm9rgvc4fhyhw8cb5pk9y7m9bpj"; + rev = "91112aff209866d679fc89ca7d0697938f80e59f"; + sha256 = "0gp0a56zd1pf31z99yzwjrjq8zhinr68izqx9klj70r0h61hsm2z"; }; meta.homepage = "https://github.com/whonore/Coqtail/"; }; @@ -1134,12 +1170,12 @@ final: prev: crates-nvim = buildVimPluginFrom2Nix { pname = "crates.nvim"; - version = "2021-10-25"; + version = "2021-11-10"; src = fetchFromGitHub { owner = "saecki"; repo = "crates.nvim"; - rev = "805a2c5cbb587a2a3f7532b59dc2eb205d6e1832"; - sha256 = "1rpslni5zvymnq06drjv7w6rap2z8md31r98s8fgvxxymgmzflys"; + rev = "0b17e2bb069cb388ba22d156bbe1b3b3b3585312"; + sha256 = "1d7gssvw2sl1girj8svbdzlrhxsjgp9rkfkjrr2jd7p5ilhry27a"; }; meta.homepage = "https://github.com/saecki/crates.nvim/"; }; @@ -1158,12 +1194,12 @@ final: prev: csv-vim = buildVimPluginFrom2Nix { pname = "csv.vim"; - version = "2021-06-29"; + version = "2021-11-05"; src = fetchFromGitHub { owner = "chrisbra"; repo = "csv.vim"; - rev = "7555c28930686b36071c96cca51477f332224231"; - sha256 = "0dr4yvv319aydcfaww8xyrvrh1x7g99c3k7wvvayfa1qwsi2w0bl"; + rev = "9ab092187a7046a8d0eedc7fbbce8fac38d10563"; + sha256 = "0ji3lg9hl50cg3kdvrr3bahfiaw0ij5aj80365nymrfj8s48m9kl"; }; meta.homepage = "https://github.com/chrisbra/csv.vim/"; }; @@ -1266,12 +1302,12 @@ final: prev: defx-nvim = buildVimPluginFrom2Nix { pname = "defx.nvim"; - version = "2021-10-24"; + version = "2021-10-26"; src = fetchFromGitHub { owner = "Shougo"; repo = "defx.nvim"; - rev = "b9d82e63a2f5f162d84b57d12ba346d8cd5eef5d"; - sha256 = "1klysn6c8mp8s9aw5x1zxqkdb1kwbirnrm627m9mhlmyms89djzm"; + rev = "2d7ddef50659f2b622e803f068a991656a66e6f8"; + sha256 = "18dzlg5lm6z4nmcx0p51687s8yx4ygxwlpcc24l6yd6lbr0z0xwr"; }; meta.homepage = "https://github.com/Shougo/defx.nvim/"; }; @@ -1314,24 +1350,24 @@ final: prev: denite-nvim = buildVimPluginFrom2Nix { pname = "denite.nvim"; - version = "2021-10-06"; + version = "2021-11-06"; src = fetchFromGitHub { owner = "Shougo"; repo = "denite.nvim"; - rev = "3f9df74f2d7e698e6479c5cff8a02da95016f403"; - sha256 = "1bniby3qr0d4k7j17y2z83ppx7gmah2gb5qn3vx7gw50i89j6gls"; + rev = "7e14c6c4d645c891b07c73d294ba9aadb08a9843"; + sha256 = "10b4ip39mx0r0xj16lysxr042gsdr0x3vh87yv5c2m5hn5jp9fq9"; }; meta.homepage = "https://github.com/Shougo/denite.nvim/"; }; deol-nvim = buildVimPluginFrom2Nix { pname = "deol.nvim"; - version = "2021-10-11"; + version = "2021-11-06"; src = fetchFromGitHub { owner = "Shougo"; repo = "deol.nvim"; - rev = "b39664490b640bb4b80f5d2490e03ffa4947d736"; - sha256 = "11j70qwl2amxiw39602anx1vxqzjk5vfidpk3vcarlcfxm750aj2"; + rev = "feb1269a56628accc1ec74f4d5e0ea91b80fe9f9"; + sha256 = "0nnbj538vd99rb4cjfs6xxx6c1n7aflpw92zkz9if1xhfw4jqfzc"; }; meta.homepage = "https://github.com/Shougo/deol.nvim/"; }; @@ -1544,12 +1580,12 @@ final: prev: deoplete-nvim = buildVimPluginFrom2Nix { pname = "deoplete.nvim"; - version = "2021-09-02"; + version = "2021-11-02"; src = fetchFromGitHub { owner = "Shougo"; repo = "deoplete.nvim"; - rev = "18788fc822abd1ac1ffc1a8189afbfae15d06cf9"; - sha256 = "1w962pwfzfn7j1y8lbdkbsv64cb6l9iyaazpdlvgqwvl2hvi6cwz"; + rev = "1c40f648d2b00e70beb4c473b7c0e32b633bd9ae"; + sha256 = "1256k6pi6vx7zvh74px4p4kyd9rnsipjrf59mydix3a39k2xfyld"; }; meta.homepage = "https://github.com/Shougo/deoplete.nvim/"; }; @@ -1604,12 +1640,12 @@ final: prev: diffview-nvim = buildVimPluginFrom2Nix { pname = "diffview.nvim"; - version = "2021-10-22"; + version = "2021-11-11"; src = fetchFromGitHub { owner = "sindrets"; repo = "diffview.nvim"; - rev = "d4ee04c9eb8951dcf1aa83d7a896bededfc68228"; - sha256 = "0wfrbhnal7y82bhrf446igc6g9avavk2jx0idk5sbv24bqhi9b60"; + rev = "a38306ddf893b95b55c6cd881605b3232c658e42"; + sha256 = "1c55zhxzf3zps7fzqs4vsd81z9la2x3blvjwh45abs93rnqik8nx"; }; meta.homepage = "https://github.com/sindrets/diffview.nvim/"; }; @@ -1628,12 +1664,12 @@ final: prev: doki-theme-vim = buildVimPluginFrom2Nix { pname = "doki-theme-vim"; - version = "2021-09-28"; + version = "2021-10-27"; src = fetchFromGitHub { owner = "doki-theme"; repo = "doki-theme-vim"; - rev = "f1ef4c045b2a6042615b01f05a9bbf8ed597203a"; - sha256 = "0f2pqyggr0svc9v0hkr0hz77avrz1yvsxv8h3qzakbwba18dfi5w"; + rev = "f5f5adbc563120e80201e17196d625e758691a13"; + sha256 = "0y09j8jl48hldmnwli69shq3lfphg7mifnmis0c5k371lznbi08s"; }; meta.homepage = "https://github.com/doki-theme/doki-theme-vim/"; }; @@ -1676,12 +1712,12 @@ final: prev: edge = buildVimPluginFrom2Nix { pname = "edge"; - version = "2021-10-12"; + version = "2021-11-11"; src = fetchFromGitHub { owner = "sainnhe"; repo = "edge"; - rev = "1a91fe0efc1bb1c4564140b6a5be7e3bf5ac0873"; - sha256 = "17a9lnhwf8vsfx2pm5bwzd6khfb3w954kx1w72msfmqf46v3d1ah"; + rev = "f2c8e3d2a72f3763e3ea9c620a118e73e2146fb1"; + sha256 = "08v10j0hirqcj2r2fcw8b04v8bpwj1kp887pq8vs5f57ncqzl8x7"; }; meta.homepage = "https://github.com/sainnhe/edge/"; }; @@ -1701,12 +1737,12 @@ final: prev: editorconfig-nvim = buildVimPluginFrom2Nix { pname = "editorconfig.nvim"; - version = "2021-09-30"; + version = "2021-11-02"; src = fetchFromGitHub { owner = "gpanders"; repo = "editorconfig.nvim"; - rev = "ae3586771996b2fb1662eb0c17f5d1f4f5759bb7"; - sha256 = "1xqsaw76wnx0rjx88mqqgggnhvjvw2zp8q0qj4ljpvdj9sklfjhy"; + rev = "de419f22817fd93c7c09bf7d47838945761a2c9c"; + sha256 = "0k6qdqmh5irjz1lyyy49pgdwa4fz4yyq4fxfx60dacjf6g99d19s"; }; meta.homepage = "https://github.com/gpanders/editorconfig.nvim/"; }; @@ -1786,12 +1822,12 @@ final: prev: falcon = buildVimPluginFrom2Nix { pname = "falcon"; - version = "2021-10-25"; + version = "2021-11-03"; src = fetchFromGitHub { owner = "fenetikm"; repo = "falcon"; - rev = "0ecdf0fbeb441d7c4134fb28f9f5f6a3cfc1e837"; - sha256 = "1nnxps0aa5bv6gkz5gfj7a0yaj9a4f81grfaijvanlw0cxa2f51w"; + rev = "7d08b7ceb9ac34f131b3125849476960876798b6"; + sha256 = "0p9w78w9q8l2428rh5p53hs6p0zia7ffmyll8kcll7qbixf1sp2s"; }; meta.homepage = "https://github.com/fenetikm/falcon/"; }; @@ -1822,12 +1858,12 @@ final: prev: fcitx-vim = buildVimPluginFrom2Nix { pname = "fcitx.vim"; - version = "2021-08-20"; + version = "2021-10-26"; src = fetchFromGitHub { owner = "lilydjwg"; repo = "fcitx.vim"; - rev = "3554b279a09f0edf31129ad162613e5954097fd0"; - sha256 = "1bhjylsw6b44nhmsiy0xvligrdnh9gnz27cwriqxp7lfv5pcz0ch"; + rev = "c689083ffb1d1076dd3fb9b587fd3c6d9f9d6b5a"; + sha256 = "1hcg6lkgnx87qnqj8qc3gvpcfyav2v79mi5mjkjqkfw2f339gc5c"; }; meta.homepage = "https://github.com/lilydjwg/fcitx.vim/"; }; @@ -1858,12 +1894,12 @@ final: prev: fern-vim = buildVimPluginFrom2Nix { pname = "fern.vim"; - version = "2021-10-24"; + version = "2021-11-11"; src = fetchFromGitHub { owner = "lambdalisue"; repo = "fern.vim"; - rev = "338c7190a535cc5cf82e9d7443964b2e4f8bf97f"; - sha256 = "1d74k0mgf8axsnksq5dh3zlangabwdx7vwfi05wx0q7vkxm545d4"; + rev = "dd365ec17e9ff1d87a5ce4ade8abf123ecfd007a"; + sha256 = "0s5gygvbz9ffnaxaikqj8mi16ip1gqxa19ijvjsjc8rv6jpkylsd"; }; meta.homepage = "https://github.com/lambdalisue/fern.vim/"; }; @@ -1894,12 +1930,12 @@ final: prev: FixCursorHold-nvim = buildVimPluginFrom2Nix { pname = "FixCursorHold.nvim"; - version = "2021-10-15"; + version = "2021-11-02"; src = fetchFromGitHub { owner = "antoinemadec"; repo = "FixCursorHold.nvim"; - rev = "f2572b0163d7b19b4e8a7c76a3eb084921d736de"; - sha256 = "06agspmka503yn75873kk0g5v2m91df1zblsh96gkc4h6wm52liv"; + rev = "0e4e22d21975da60b0fd2d302285b3b603f9f71e"; + sha256 = "1qrf6ig1gbrbq6wrxqkabnqx6zqwjw7wqacl7q2ckw4sy6sam7mz"; }; meta.homepage = "https://github.com/antoinemadec/FixCursorHold.nvim/"; }; @@ -1955,12 +1991,12 @@ final: prev: formatter-nvim = buildVimPluginFrom2Nix { pname = "formatter.nvim"; - version = "2021-09-20"; + version = "2021-11-03"; src = fetchFromGitHub { owner = "mhartington"; repo = "formatter.nvim"; - rev = "2b187813f63d22f572ebe406711e2d0e81272f8e"; - sha256 = "0vbwagbx2wzalf9sp3w6fr06fllvj936id4yvafk73gp6ihsn1wj"; + rev = "0cdce2da8762ee01ee7d8df047b6e569d58c1ba3"; + sha256 = "1169xj5k04l7gfhxqa4afq9khf6yv5bcihir21sgzpym4z69axh7"; }; meta.homepage = "https://github.com/mhartington/formatter.nvim/"; }; @@ -1979,12 +2015,12 @@ final: prev: friendly-snippets = buildVimPluginFrom2Nix { pname = "friendly-snippets"; - version = "2021-10-12"; + version = "2021-11-12"; src = fetchFromGitHub { owner = "rafamadriz"; repo = "friendly-snippets"; - rev = "59507a9773ea1a24072342da357da0708b303ef9"; - sha256 = "1d5ragvg9jxs3axln3cqj7i37c0vxdyfwl4ll06yslghb77krf6w"; + rev = "05bfa7681b8f11b664fab657001c2efb6f3ec85e"; + sha256 = "1133f32q4g990mmvdrbnjxggk8y96w0c5zlvh553cz9j626a4zks"; }; meta.homepage = "https://github.com/rafamadriz/friendly-snippets/"; }; @@ -2051,24 +2087,24 @@ final: prev: fzf-lsp-nvim = buildVimPluginFrom2Nix { pname = "fzf-lsp.nvim"; - version = "2021-10-21"; + version = "2021-11-07"; src = fetchFromGitHub { owner = "gfanto"; repo = "fzf-lsp.nvim"; - rev = "34bddd8a31441435f1d29eef0452576d12144da7"; - sha256 = "1ijqnqmdlm2f3jkjh68baif05lf27rww43vvndix2icypnd16vcp"; + rev = "19a6f405e4a6eb74788393390d945bd156d559b3"; + sha256 = "0nq9nfviyly136xhjzdvmhvj7flz44pl5as0npa4d13ng3gs451p"; }; meta.homepage = "https://github.com/gfanto/fzf-lsp.nvim/"; }; fzf-vim = buildVimPluginFrom2Nix { pname = "fzf.vim"; - version = "2021-10-10"; + version = "2021-11-02"; src = fetchFromGitHub { owner = "junegunn"; repo = "fzf.vim"; - rev = "0452b71830b1a219b8cdc68141ee58ec288ea711"; - sha256 = "0z2p1j9ri71f0ynwppjg7d4gi3srcg58km5ggc55s0dwwwndb8k4"; + rev = "d6aa21476b2854694e6aa7b0941b8992a906c5ec"; + sha256 = "058jczzwnbb7nc0a6iqp26gw5hrv7mkn1bazmlg2s6jkirasra7i"; }; meta.homepage = "https://github.com/junegunn/fzf.vim/"; }; @@ -2099,12 +2135,12 @@ final: prev: gentoo-syntax = buildVimPluginFrom2Nix { pname = "gentoo-syntax"; - version = "2021-09-11"; + version = "2021-11-06"; src = fetchFromGitHub { owner = "gentoo"; repo = "gentoo-syntax"; - rev = "c38b35cb2b5c8b1a60b5cfd61749ec3b7268218b"; - sha256 = "1m43bq5cq8k9m71hha76pd1kq8nf9cs7jrgk25m15fc5ywaz4fag"; + rev = "b3014c2205200b6e52a3093b1053b69a0228f878"; + sha256 = "081b7d8vhhvrarfbv4681vf68vrxnlfagmglyg90wzpjiasf6vb2"; }; meta.homepage = "https://github.com/gentoo/gentoo-syntax/"; }; @@ -2171,12 +2207,12 @@ final: prev: git-worktree-nvim = buildVimPluginFrom2Nix { pname = "git-worktree.nvim"; - version = "2021-08-24"; + version = "2021-11-09"; src = fetchFromGitHub { owner = "ThePrimeagen"; repo = "git-worktree.nvim"; - rev = "e562d8a3baa6c96d148944592a2d7c88f48927f2"; - sha256 = "1c78pjycvnkq28ar7bp0xiadyd3jml596hsw0fsxvbdwba4a7ikk"; + rev = "14d4be5f9db5c5cce7b4c1ee10c70d663c367373"; + sha256 = "11gzz2dc75b0sqkkxsiw9yramfwhcrv4vq39mxlzmxxzbzk11dv2"; }; meta.homepage = "https://github.com/ThePrimeagen/git-worktree.nvim/"; }; @@ -2207,12 +2243,12 @@ final: prev: gitsigns-nvim = buildVimPluginFrom2Nix { pname = "gitsigns.nvim"; - version = "2021-10-22"; + version = "2021-11-11"; src = fetchFromGitHub { owner = "lewis6991"; repo = "gitsigns.nvim"; - rev = "d12442a924dc431467149f1fcb33e1c648116803"; - sha256 = "0gpnp3vp0418hhjlwdawxc7slyh6p8pmdvycjm6rmyr0xjxx7ipm"; + rev = "e6775fa32e4904cc8bbd098ba9807db9606e816e"; + sha256 = "1w7vq9jbw3lhd8i9wbf71q344235iwcigff7jrrh3fbcq6kk7m12"; }; meta.homepage = "https://github.com/lewis6991/gitsigns.nvim/"; }; @@ -2243,12 +2279,12 @@ final: prev: glow-nvim = buildVimPluginFrom2Nix { pname = "glow.nvim"; - version = "2021-09-05"; + version = "2021-11-05"; src = fetchFromGitHub { owner = "ellisonleao"; repo = "glow.nvim"; - rev = "ae61bac7a4ec720b247d016473d6214d0e8aa0cc"; - sha256 = "0ykydvv4pd6annkm41lv8c22pnwfai5m65v412l8dbgnll43vviz"; + rev = "708d3f3aca0f4e6bc9a6b9188bc7b37a828b8fa7"; + sha256 = "01a9n27h0gna73amhaxsyj607a948nvhjk5b55ramzz0iippvkp0"; }; meta.homepage = "https://github.com/ellisonleao/glow.nvim/"; }; @@ -2279,12 +2315,12 @@ final: prev: goto-preview = buildVimPluginFrom2Nix { pname = "goto-preview"; - version = "2021-10-18"; + version = "2021-11-09"; src = fetchFromGitHub { owner = "rmagatti"; repo = "goto-preview"; - rev = "05383bbbfccbf4fd6a4527ef8383270d03dde833"; - sha256 = "0djcvbj94k4qp09bvzvcnwwybsincc4lvdz84vw9jyzkz3pgxmy5"; + rev = "b930629c018c6b30d42e8d271a32a37e0360c628"; + sha256 = "0mly30sqbs43xmkda04jzk4knxcv7f42sddm87ky6j8ii67147ys"; }; meta.homepage = "https://github.com/rmagatti/goto-preview/"; }; @@ -2339,24 +2375,24 @@ final: prev: gruvbox-material = buildVimPluginFrom2Nix { pname = "gruvbox-material"; - version = "2021-10-12"; + version = "2021-11-11"; src = fetchFromGitHub { owner = "sainnhe"; repo = "gruvbox-material"; - rev = "fa709b95ba0cbc35310125bc2e42ffeb2576bd4d"; - sha256 = "06vzhcciifb8vwzmkbwy4hnzwrj2rgz3zl91xh8dbf1g4fh54w8x"; + rev = "a25c5294013d58e4fde6b72d94a5f77e3330f0cc"; + sha256 = "0k4baphl8x6fy8hqidr7g8mw6w1cjhwsgjmsd9v72a9ikl4z22vq"; }; meta.homepage = "https://github.com/sainnhe/gruvbox-material/"; }; gruvbox-nvim = buildVimPluginFrom2Nix { pname = "gruvbox.nvim"; - version = "2021-09-24"; + version = "2021-11-12"; src = fetchFromGitHub { owner = "ellisonleao"; repo = "gruvbox.nvim"; - rev = "88202213fea9e2e081ad6a40bfb975b2b9434733"; - sha256 = "1vwjq6wgayh7n7lxaj5qqyf7xjqfgqp9mb9jlnqyfxl4b6phm2aa"; + rev = "dc7c63320c523997610ced545007935c72d81942"; + sha256 = "16nvlli0vmqxdbcx2d8p2nsl0865444l1d3ji23z9cbz4i171rsw"; }; meta.homepage = "https://github.com/ellisonleao/gruvbox.nvim/"; }; @@ -2385,6 +2421,18 @@ final: prev: meta.homepage = "https://github.com/junegunn/gv.vim/"; }; + harpoon = buildVimPluginFrom2Nix { + pname = "harpoon"; + version = "2021-11-09"; + src = fetchFromGitHub { + owner = "ThePrimeagen"; + repo = "harpoon"; + rev = "57819752e62251f9488a95fea1690bb62547bd2a"; + sha256 = "0x5x6jmz31aclai0l2dplr0y16f97jb40cgvnrx8mr5gb0s5i7sc"; + }; + meta.homepage = "https://github.com/ThePrimeagen/harpoon/"; + }; + haskell-vim = buildVimPluginFrom2Nix { pname = "haskell-vim"; version = "2021-01-19"; @@ -2459,12 +2507,12 @@ final: prev: hop-nvim = buildVimPluginFrom2Nix { pname = "hop.nvim"; - version = "2021-10-23"; + version = "2021-11-07"; src = fetchFromGitHub { owner = "phaazon"; repo = "hop.nvim"; - rev = "4a7cadead26bc3094318415cdeb693840f518383"; - sha256 = "00vf4g9is4080mkdycpz2ra4lp9nm635987wg20zp21v1mrh2xzz"; + rev = "f0eaff8cc4e66820b17a08c518c22c687f714bb5"; + sha256 = "0a67fv1vabik4g7w5h2nl9h6j8jc2jb0yd92gzhbmfi4jjj2j19a"; }; meta.homepage = "https://github.com/phaazon/hop.nvim/"; }; @@ -2567,12 +2615,12 @@ final: prev: indent-blankline-nvim = buildVimPluginFrom2Nix { pname = "indent-blankline.nvim"; - version = "2021-10-24"; + version = "2021-11-12"; src = fetchFromGitHub { owner = "lukas-reineke"; repo = "indent-blankline.nvim"; - rev = "ec24675a055f34ba3fa30e5e2855b2e4480347ca"; - sha256 = "1k3zj75lz72arx13hm08azdpqlkfjjdpsl2cb5b78bknm3prwnr5"; + rev = "9f663d31d4ee0672f24cd5b26ca3863665048a25"; + sha256 = "1lzdi3pgw9hf8pkmh3y8w3lrl27kac18hq4ryk0mghqyb8saabzw"; }; meta.homepage = "https://github.com/lukas-reineke/indent-blankline.nvim/"; }; @@ -2772,12 +2820,12 @@ final: prev: kotlin-vim = buildVimPluginFrom2Nix { pname = "kotlin-vim"; - version = "2021-07-03"; + version = "2021-11-08"; src = fetchFromGitHub { owner = "udalov"; repo = "kotlin-vim"; - rev = "9122b2805499fbde06f27116f4b7a2a30d6996f5"; - sha256 = "0xq156vqzwix87ndq8nfwqmvwp251fnp553zxjlqhccbbyr70pky"; + rev = "6fec676fe552cb30165dc8977dab9353c4c3ab26"; + sha256 = "08sz0fmlk4bzzkg5j0zbjd1dki1ykigar4rzyc05xfynvkcxh4fg"; }; meta.homepage = "https://github.com/udalov/kotlin-vim/"; }; @@ -2844,12 +2892,12 @@ final: prev: lazygit-nvim = buildVimPluginFrom2Nix { pname = "lazygit.nvim"; - version = "2021-08-07"; + version = "2021-10-31"; src = fetchFromGitHub { owner = "kdheepak"; repo = "lazygit.nvim"; - rev = "b1ebb53902a4f5d8c565f7485d4e57d937f89b91"; - sha256 = "1fjzrrr0i0yvl2q65r1v922iza13zy8chfcz998hi499sizviwmq"; + rev = "bcd111df61abe90b133cb08ea577c02af44ca5ce"; + sha256 = "08sbigblq42kb5qhn5z4i856p7sj5i86hcqlqpm0fidxr8c6xsf9"; }; meta.homepage = "https://github.com/kdheepak/lazygit.nvim/"; }; @@ -2868,12 +2916,12 @@ final: prev: lean-nvim = buildVimPluginFrom2Nix { pname = "lean.nvim"; - version = "2021-10-30"; + version = "2021-11-11"; src = fetchFromGitHub { owner = "Julian"; repo = "lean.nvim"; - rev = "e586b463cb0ac841556e53f5b71e3ef109007378"; - sha256 = "0caq2vab9hn2i39f5848zk1d3fl1zfpcadnqnm4gwnzga3cnfpbz"; + rev = "f8f64e9d6af3f054c1044831e689ee96a31ef3fb"; + sha256 = "10jkibn2gzkzyvmib8zfsy5220hssk4f0rkgliqyjvbsnv1mxka6"; }; meta.homepage = "https://github.com/Julian/lean.nvim/"; }; @@ -2916,28 +2964,16 @@ final: prev: lexima-vim = buildVimPluginFrom2Nix { pname = "lexima.vim"; - version = "2021-08-12"; + version = "2021-11-11"; src = fetchFromGitHub { owner = "cohama"; repo = "lexima.vim"; - rev = "6b716e2118d842a26620387f0845e57cfd69ffaf"; - sha256 = "1az40rjfyvwg9zkk822abrf0v0ccm29rp5290capirnfna5w71d6"; + rev = "99ece6758ec49b04de983873e4117a390121fbb8"; + sha256 = "00sjngkscry6ln9d94w9b2466d1y2prxivaxn8hqxpng1wyhhlay"; }; meta.homepage = "https://github.com/cohama/lexima.vim/"; }; - lingua-franca-vim = buildVimPluginFrom2Nix { - pname = "lingua-franca"; - version = "2021-9-5"; - src = fetchFromGitHub { - owner = "lf-lang"; - repo = "lingua-franca.vim"; - rev = "439b92a13744ee21cb3cd9c399e179efbcaa2967"; - sha256 = "sha256-Bf2MabUe3fy0meL6zIYgal/yFxtLKsg3b/BUI/AVlrM="; - }; - meta.homepage = "https://github.com/lf-lang/lingua-franca.vim"; - }; - lf-vim = buildVimPluginFrom2Nix { pname = "lf.vim"; version = "2021-02-18"; @@ -3024,12 +3060,12 @@ final: prev: lightspeed-nvim = buildVimPluginFrom2Nix { pname = "lightspeed.nvim"; - version = "2021-10-24"; + version = "2021-11-11"; src = fetchFromGitHub { owner = "ggandor"; repo = "lightspeed.nvim"; - rev = "0a40c82fea060709b95b926cd0fe1bf1229e2900"; - sha256 = "1wvcd4nix9variddhfpn9mak5m2rskhc4vgfwy4pi3hrrwixjlyh"; + rev = "6429028c58a2a64916cb9132743e5301af460c1c"; + sha256 = "0qhx7axm5vg1xh5j2mg0x3l7154f4n55k28pajrak4yw7ws82232"; }; meta.homepage = "https://github.com/ggandor/lightspeed.nvim/"; }; @@ -3046,14 +3082,26 @@ final: prev: meta.homepage = "https://github.com/junegunn/limelight.vim/"; }; + lingua-franca-vim = buildVimPluginFrom2Nix { + pname = "lingua-franca.vim"; + version = "2021-09-05"; + src = fetchFromGitHub { + owner = "lf-lang"; + repo = "lingua-franca.vim"; + rev = "439b92a13744ee21cb3cd9c399e179efbcaa2967"; + sha256 = "1cwn2pq26m7hdwvwhajb3cbz4pva423cryp2k6sgrp8ynmlqrz85"; + }; + meta.homepage = "https://github.com/lf-lang/lingua-franca.vim/"; + }; + lir-nvim = buildVimPluginFrom2Nix { pname = "lir.nvim"; - version = "2021-10-19"; + version = "2021-11-03"; src = fetchFromGitHub { owner = "tamago324"; repo = "lir.nvim"; - rev = "e33a669824ea160a03b77357ba7f1a2617a3f16d"; - sha256 = "1l5syicgdcd6badrrpxji8nig98mwq9dv0nq6abjyg4scip251li"; + rev = "e340f4ee25c74aaa6d67d84a5f48024a8f6422a0"; + sha256 = "08wbfpdirmdjnj7l7kd008iwcp466skflb3rr3rzqshmqfv7vqfk"; }; meta.homepage = "https://github.com/tamago324/lir.nvim/"; }; @@ -3120,24 +3168,24 @@ final: prev: lsp_signature-nvim = buildVimPluginFrom2Nix { pname = "lsp_signature.nvim"; - version = "2021-10-25"; + version = "2021-11-06"; src = fetchFromGitHub { owner = "ray-x"; repo = "lsp_signature.nvim"; - rev = "6469c55ce7afc8cdfb6d0b6b3fbfd331bcc26410"; - sha256 = "05gwpgzxb8swb4x5brwqipbdmc24v1j9zc2x0nv4ivwchlal6n48"; + rev = "e5bd090b6d01af8f5d171f4183ff01aaa63a2b99"; + sha256 = "133bapazws12g2axzw8v9vkigpsdxc708hjlnzfkg0rwbm1pw9sc"; }; meta.homepage = "https://github.com/ray-x/lsp_signature.nvim/"; }; lspkind-nvim = buildVimPluginFrom2Nix { pname = "lspkind-nvim"; - version = "2021-10-11"; + version = "2021-10-25"; src = fetchFromGitHub { owner = "onsails"; repo = "lspkind-nvim"; - rev = "0f7851772ebdd5cb67a04b3d3cda5281a1eb83c1"; - sha256 = "0jk1xlp8x6vw40dl96zvmdxv0p8100rzx7za58xpahz10232lckx"; + rev = "1557ce5b3b8e497c1cb1d0b9d967a873136b0c23"; + sha256 = "0qrfrwd7mz311hjmpkjfjg1d2dkar675vflizpj0p09b5dp8zkbv"; }; meta.homepage = "https://github.com/onsails/lspkind-nvim/"; }; @@ -3168,36 +3216,36 @@ final: prev: lualine-nvim = buildVimPluginFrom2Nix { pname = "lualine.nvim"; - version = "2021-10-23"; + version = "2021-11-11"; src = fetchFromGitHub { owner = "nvim-lualine"; repo = "lualine.nvim"; - rev = "ef063f72b48caf9c31dec670ddc489f05bad0949"; - sha256 = "003r00b38z5njmraj9rhrw1ci6ifl6rb9sa2592csa6y5cx5wayy"; + rev = "df46c1e70a0aeb234aa9d2048d14f626a1cca317"; + sha256 = "0khkkicwcnrwpd9scdsggia916ws6hvpyx0gnszg43zq74q5h27q"; }; meta.homepage = "https://github.com/nvim-lualine/lualine.nvim/"; }; luasnip = buildVimPluginFrom2Nix { pname = "luasnip"; - version = "2021-10-22"; + version = "2021-11-09"; src = fetchFromGitHub { owner = "l3mon4d3"; repo = "luasnip"; - rev = "3dc04d379f82b7263b26565c74748ea68879b022"; - sha256 = "1wn6wa03xq3gsp79wsxwml14sxrg4540b3g4rvqhxilyi30m3kdn"; + rev = "366fd76ea226bed11966cd8b1a229cba08fa4394"; + sha256 = "17jla5yvi0vzgi0himl8fyfmc8sl8xg1k5bzl58iq0d2ycmr08as"; }; meta.homepage = "https://github.com/l3mon4d3/luasnip/"; }; lush-nvim = buildVimPluginFrom2Nix { pname = "lush.nvim"; - version = "2021-10-19"; + version = "2021-11-06"; src = fetchFromGitHub { owner = "rktjmp"; repo = "lush.nvim"; - rev = "40d92a16a8d639b6cb928f9d49710711892fbf77"; - sha256 = "0316lvwffkm4cgzgk4pxnmr6hc1ypgdiswb4yhg4wx9pfq8pccxb"; + rev = "57e9f310b7ddde27664c3e1a5ec3517df235124b"; + sha256 = "0y38id1dj15snx79sazh0kvs2c3jb1h6kyzr90zhm0130m7x6nri"; }; meta.homepage = "https://github.com/rktjmp/lush.nvim/"; }; @@ -3228,12 +3276,12 @@ final: prev: marks-nvim = buildVimPluginFrom2Nix { pname = "marks.nvim"; - version = "2021-10-23"; + version = "2021-11-07"; src = fetchFromGitHub { owner = "chentau"; repo = "marks.nvim"; - rev = "15b6960d0ad9c578fd23b8caa5acfee0d09e4600"; - sha256 = "0khw541h2x39q4a1cx96019gdfmy1m0xgkbbfqhagr02gkm8dzy4"; + rev = "f43e349601b439b4b07bec1d996cfd70d48d09fb"; + sha256 = "0xnrklam85yva82ncfbpymhs8wa0g9vcks4dzdpvnj8f21la1f3d"; }; meta.homepage = "https://github.com/chentau/marks.nvim/"; }; @@ -3576,12 +3624,12 @@ final: prev: neco-vim = buildVimPluginFrom2Nix { pname = "neco-vim"; - version = "2021-10-20"; + version = "2021-10-25"; src = fetchFromGitHub { owner = "Shougo"; repo = "neco-vim"; - rev = "8d45fc9266d005929a964b099c8f9f61e526ec10"; - sha256 = "06skc44r4nccq0nfklm079b9yf99d9qfl8jp1ndn513hrnv8v5fp"; + rev = "ac084414cf1e0de86f5abaab6269b940806e8c6e"; + sha256 = "0456mvm8yzpfcfqrn9affj8s70bc2r13q07hkrlmix7d0g8mwlg7"; }; meta.homepage = "https://github.com/Shougo/neco-vim/"; }; @@ -3612,24 +3660,24 @@ final: prev: neoformat = buildVimPluginFrom2Nix { pname = "neoformat"; - version = "2021-10-23"; + version = "2021-11-09"; src = fetchFromGitHub { owner = "sbdchd"; repo = "neoformat"; - rev = "27cc8b028993c285e4c2d02cd0384940caabf753"; - sha256 = "05lpaipn6bnxxx6i5rap6m137kjlknqdbz9cikfx5p2fq61w6li0"; + rev = "f1b6cd506b72be0a2aaf529105320ec929683920"; + sha256 = "0idj1l5962vfzqhksifxi4qa8d2w8mnhdqa2z5wwpphjiparfqrg"; }; meta.homepage = "https://github.com/sbdchd/neoformat/"; }; neogit = buildVimPluginFrom2Nix { pname = "neogit"; - version = "2021-10-25"; + version = "2021-11-09"; src = fetchFromGitHub { owner = "TimUntersberger"; repo = "neogit"; - rev = "86f4a4daa278a00a311765eac17fb45e1e5688ae"; - sha256 = "16xax1gyni7qrrscq2lqsgsd271sb6y667rg395wwqhrgq98zd6j"; + rev = "807e4a795dc6c2383b281fc27bd1bc6c197d98cd"; + sha256 = "126kdn9dfvk0ggzh00439zwrq1jldnxvk0nsf7g371qkbbnc4qal"; }; meta.homepage = "https://github.com/TimUntersberger/neogit/"; }; @@ -3684,12 +3732,12 @@ final: prev: neorg = buildVimPluginFrom2Nix { pname = "neorg"; - version = "2021-10-10"; + version = "2021-10-26"; src = fetchFromGitHub { owner = "nvim-neorg"; repo = "neorg"; - rev = "376e3e6087dacaf24467bc8aad3a97ea15b98245"; - sha256 = "0cy85239glpcw9ndyskvnw507f1laq7fr2pwnvmpijr7pjhfsik8"; + rev = "592fb0c9c220ca53238e6de7685c3151fe3a3085"; + sha256 = "1s1bwa2aq28gzn3jws0nv8wr45b5mhx2wz0pld10qxmvpm7l32js"; }; meta.homepage = "https://github.com/nvim-neorg/neorg/"; }; @@ -3816,12 +3864,12 @@ final: prev: nerdtree = buildVimPluginFrom2Nix { pname = "nerdtree"; - version = "2021-09-28"; + version = "2021-10-29"; src = fetchFromGitHub { owner = "preservim"; repo = "nerdtree"; - rev = "9310f91476a94ee9c2f3a587171893743a343e26"; - sha256 = "1si8qla86ng8cffbmfrk9gss0i3912yw0f1ph4bsiq0kk837lccp"; + rev = "eed488b1cd1867bd25f19f90e10440c5cc7d6424"; + sha256 = "0hlyn2l9ppjn92zaiw51i6d15li15z5083m13m0710giqx05qrak"; }; meta.homepage = "https://github.com/preservim/nerdtree/"; }; @@ -3840,12 +3888,12 @@ final: prev: neuron-nvim = buildVimPluginFrom2Nix { pname = "neuron.nvim"; - version = "2021-10-18"; + version = "2021-11-08"; src = fetchFromGitHub { owner = "oberblastmeister"; repo = "neuron.nvim"; - rev = "10b189437c3e080502ca14ed0e7bc041274e0610"; - sha256 = "11p6n33c642z6q89j2a71czffp3d3mzhp9mdygw2gadar9g4fvl8"; + rev = "a7280d4923f51c8af8cecc53aa06ed49cbbd412d"; + sha256 = "0qanc7r9z5ry3xxbvpv9xbmxnx0f8yj10fi887yhrcms7kj73al9"; }; meta.homepage = "https://github.com/oberblastmeister/neuron.nvim/"; }; @@ -3876,24 +3924,24 @@ final: prev: nightfox-nvim = buildVimPluginFrom2Nix { pname = "nightfox.nvim"; - version = "2021-10-23"; + version = "2021-11-01"; src = fetchFromGitHub { owner = "EdenEast"; repo = "nightfox.nvim"; - rev = "21935c25fe681d43e381d49b0a44c9298d204841"; - sha256 = "0d1ims59a90avd45338m02219pmplnadssksa24r03h3kh4x5pdi"; + rev = "6df32a7283f86c5ec7cf50a6996b39d3db5c1ac2"; + sha256 = "000vf833ajysbl5210a40kg9iq43mw77k7pnf4rg84pxjx49kvvd"; }; meta.homepage = "https://github.com/EdenEast/nightfox.nvim/"; }; nim-vim = buildVimPluginFrom2Nix { pname = "nim.vim"; - version = "2020-10-16"; + version = "2021-11-11"; src = fetchFromGitHub { owner = "zah"; repo = "nim.vim"; - rev = "7a8737a4532239c06116ebde0329d8156f3d3b55"; - sha256 = "05xhac416c8zsgqlchc80f7gbjxbyngi6cxziqagdhr6kccc73gi"; + rev = "a15714fea392b0f06ff2b282921a68c7033e39a2"; + sha256 = "1vf3af8b85rjsccvclkb6aw9zgkwfpxd43jgnkbx6wrsv9bfz034"; }; meta.homepage = "https://github.com/zah/nim.vim/"; }; @@ -3912,12 +3960,12 @@ final: prev: nnn-vim = buildVimPluginFrom2Nix { pname = "nnn.vim"; - version = "2021-10-23"; + version = "2021-11-05"; src = fetchFromGitHub { owner = "mcchrish"; repo = "nnn.vim"; - rev = "de9dced7f0b10dde5938f53643baa3586b7941d8"; - sha256 = "0sdqgivlsjl5558dyakrh7vzpcnwkma5paz4i8zis1cj3zc0s78p"; + rev = "98b00d03ba1df60aa7f2fe8e21d40250bd67109b"; + sha256 = "0slvmz25ics4bbqfcfv23mplkkpvbwhyalh8qkl1gs0klmdp1lj1"; }; meta.homepage = "https://github.com/mcchrish/nnn.vim/"; }; @@ -3936,12 +3984,12 @@ final: prev: nord-nvim = buildVimPluginFrom2Nix { pname = "nord.nvim"; - version = "2021-10-20"; + version = "2021-11-07"; src = fetchFromGitHub { owner = "shaunsingh"; repo = "nord.nvim"; - rev = "9db1b2f034a90f5038a55bb0c9627599d6ea3900"; - sha256 = "0av212d3rf8fawbkjj0x2f9qs3pdvxjzdxl8zf6slw14knqpydc3"; + rev = "c9265653e7fbf70326d671b37c7c89e4fa2b8093"; + sha256 = "0cn8gxzk9l4nmfxr97xrcz8sd0vrzv827mw499nlpai1z8xqj318"; }; meta.homepage = "https://github.com/shaunsingh/nord.nvim/"; }; @@ -3960,24 +4008,36 @@ final: prev: nterm-nvim = buildVimPluginFrom2Nix { pname = "nterm.nvim"; - version = "2021-09-21"; + version = "2021-11-10"; src = fetchFromGitHub { owner = "jlesquembre"; repo = "nterm.nvim"; - rev = "fb16fc215702b075574f83c0e332d47575da642e"; - sha256 = "1kcdkw4i1q889hnil70fjqqikzlzqcrhf0i5ab6y8mh5vpg6cp96"; + rev = "14d16c83aa1d165724f7780f470c4dcde5addcb6"; + sha256 = "0y883fpjfk7lki8nfscxhfw0wr7xm1d22zgf52zqmc9pjznjz9my"; }; meta.homepage = "https://github.com/jlesquembre/nterm.nvim/"; }; + nui-nvim = buildVimPluginFrom2Nix { + pname = "nui.nvim"; + version = "2021-11-11"; + src = fetchFromGitHub { + owner = "MunifTanjim"; + repo = "nui.nvim"; + rev = "e940b57f30f6035df690fb24b1e5c93ae6aafcd6"; + sha256 = "0nvg3zsgqbk0gs978gzfkc57xn3wcn1mcsf6qrgc1xz4jxdd582m"; + }; + meta.homepage = "https://github.com/MunifTanjim/nui.nvim/"; + }; + null-ls-nvim = buildVimPluginFrom2Nix { pname = "null-ls.nvim"; - version = "2021-10-21"; + version = "2021-11-12"; src = fetchFromGitHub { owner = "jose-elias-alvarez"; repo = "null-ls.nvim"; - rev = "4a7ac163de30d04ab697eeea86b7ea773100b8e4"; - sha256 = "0chgqap87v2ar7jj1n0g6haqiprz5lhkny9jy4imi5qgf7hb5f6i"; + rev = "8a99a75a1cf3243ebec09b1fa13be51ea56151ec"; + sha256 = "1c2s3vp10km5x3q5n63ljlgyc7cmf72mjd31ybqzknfy8pfk7g6z"; }; meta.homepage = "https://github.com/jose-elias-alvarez/null-ls.nvim/"; }; @@ -4008,48 +4068,48 @@ final: prev: nvim-ale-diagnostic = buildVimPluginFrom2Nix { pname = "nvim-ale-diagnostic"; - version = "2021-10-08"; + version = "2021-11-06"; src = fetchFromGitHub { owner = "nathanmsmith"; repo = "nvim-ale-diagnostic"; - rev = "8ac8c4c44108ab294a89927e2a5848b2b05c52e7"; - sha256 = "0la2wsm89r3a3n003hsljlshyby68shiwp86yc8vkmlcgmqn6wpb"; + rev = "5c81828853ffd138be0ae482e3441c35976529f6"; + sha256 = "1bs9qkpphrkcf9y5xig23igcgdb8xj2vsil5pc7qh4bwkp2njbp0"; }; meta.homepage = "https://github.com/nathanmsmith/nvim-ale-diagnostic/"; }; nvim-autopairs = buildVimPluginFrom2Nix { pname = "nvim-autopairs"; - version = "2021-10-25"; + version = "2021-11-09"; src = fetchFromGitHub { owner = "windwp"; repo = "nvim-autopairs"; - rev = "fdeb794ee7c4bbf4ea13b23cea3beb823f6ce88a"; - sha256 = "1dgm3krnz476lpj96z3sw2lqgpfrfg9hhbbc628nh6w3zsk9npyk"; + rev = "f4f1c9f27d8514885cd851b3ae0a648e1eb15a17"; + sha256 = "0ipb2pvkc28zp5pdb5ih5rcnzj4wkwg5i59lb3ll4cv0yj398kr9"; }; meta.homepage = "https://github.com/windwp/nvim-autopairs/"; }; nvim-base16 = buildVimPluginFrom2Nix { pname = "nvim-base16"; - version = "2021-10-02"; + version = "2021-11-03"; src = fetchFromGitHub { owner = "RRethy"; repo = "nvim-base16"; - rev = "dc4fad8f5f3d6f4ae3f58a6917fbb89cd84f82b2"; - sha256 = "13akplwcsndp8a7n9jvzs19b2906g5a9zb1zy9lx4q8anw6fyaq2"; + rev = "e26952fbb030865c6d44e9875467177d7d0e1db7"; + sha256 = "0mxf7ikqzqx54j5dc74v6c146vmhahbcbv9apshvkb6vdm23i3wq"; }; meta.homepage = "https://github.com/RRethy/nvim-base16/"; }; nvim-bqf = buildVimPluginFrom2Nix { pname = "nvim-bqf"; - version = "2021-10-24"; + version = "2021-11-12"; src = fetchFromGitHub { owner = "kevinhwang91"; repo = "nvim-bqf"; - rev = "ead9c8d0e56454475de5b07acdb175d913190940"; - sha256 = "1zj2gxq5vys5fnp8qnk9w2x0g3s106ml423k931mzad2451n57h9"; + rev = "257b3ab8b78df52b2dc7f2ba3806a9bf2f1c4c08"; + sha256 = "0crmb6prvyy6fnjf1axm9mqm282xhypmkvfzwyw508rm9xq3g7yk"; }; meta.homepage = "https://github.com/kevinhwang91/nvim-bqf/"; }; @@ -4080,24 +4140,24 @@ final: prev: nvim-cmp = buildVimPluginFrom2Nix { pname = "nvim-cmp"; - version = "2021-10-25"; + version = "2021-11-11"; src = fetchFromGitHub { owner = "hrsh7th"; repo = "nvim-cmp"; - rev = "ea6dde8081be16b334fa614930a8772d6088ec9b"; - sha256 = "0ry1iy5d4ij77b9ib4viqqmbs3yi4i92pr8sj9yzd3yn7dwl1hda"; + rev = "af06bd4b440c4da6b363ec2c3feb49bc0cda5510"; + sha256 = "0ckvm3kggnfqv4ngaxpl4zikbs2pwbqgy5x9fqzrdj2vydfm85wp"; }; meta.homepage = "https://github.com/hrsh7th/nvim-cmp/"; }; nvim-code-action-menu = buildVimPluginFrom2Nix { pname = "nvim-code-action-menu"; - version = "2021-10-15"; + version = "2021-10-28"; src = fetchFromGitHub { owner = "weilbith"; repo = "nvim-code-action-menu"; - rev = "977abc8bbf83c5e1c7c476223bcec7b7036c0b5a"; - sha256 = "0jf0kiawhslk5y8h14p9abxsp7iigni6jps3gcirswvxw8clhpxl"; + rev = "32a02caf1cb6d5d31167945a2df9d371d68b1009"; + sha256 = "1cpl29lz2c3fahrrz8lf9dccwy2iwdj4mn71xgn12kq3qarjijdv"; }; meta.homepage = "https://github.com/weilbith/nvim-code-action-menu/"; }; @@ -4152,36 +4212,36 @@ final: prev: nvim-dap = buildVimPluginFrom2Nix { pname = "nvim-dap"; - version = "2021-10-14"; + version = "2021-10-29"; src = fetchFromGitHub { owner = "mfussenegger"; repo = "nvim-dap"; - rev = "fafd7f9a7ab70fd2cb519a98b594859ba4eefcd7"; - sha256 = "11ky72s1vk9bnf6dji913hiifxdvih0a17yljxs03qhnynvlc5p9"; + rev = "dd778f65dc95323f781f291fb7c5bf3c17d057b1"; + sha256 = "1nvn03rx7gvrdvfmgsmwm2ncgsyizqyvgv92v7cvfa3jv30vfb0a"; }; meta.homepage = "https://github.com/mfussenegger/nvim-dap/"; }; nvim-dap-ui = buildVimPluginFrom2Nix { pname = "nvim-dap-ui"; - version = "2021-09-27"; + version = "2021-11-06"; src = fetchFromGitHub { owner = "rcarriga"; repo = "nvim-dap-ui"; - rev = "547635e7ba1dace13189386c98c3c7b064d585c4"; - sha256 = "00i55cccg65r0zz58ap6if6wgrsm1n6r0clgf959sigmj8q9559h"; + rev = "649e0fee4f0b8dc6305dd29065c7623c3dc6a032"; + sha256 = "110qf4gp3v6k9q2232hm2arz3c1jpb20s5vd69iqhq8nh3zvrl6a"; }; meta.homepage = "https://github.com/rcarriga/nvim-dap-ui/"; }; nvim-dap-virtual-text = buildVimPluginFrom2Nix { pname = "nvim-dap-virtual-text"; - version = "2021-10-19"; + version = "2021-11-02"; src = fetchFromGitHub { owner = "theHamsta"; repo = "nvim-dap-virtual-text"; - rev = "5fb1dea489fee93fb30751860f98d3e0e6641b33"; - sha256 = "14l98a3j8wb4d0952x1ids6ba6k9960bx07dqzzp8yvd38hxas80"; + rev = "7ceb1a76a5049741cdd2d4d34963132737e1b5aa"; + sha256 = "0baa746w1v9g2q3mnpq32vv1jifwx3dc04z55kjiwrf8h0qzrg0p"; }; meta.homepage = "https://github.com/theHamsta/nvim-dap-virtual-text/"; }; @@ -4212,36 +4272,36 @@ final: prev: nvim-gps = buildVimPluginFrom2Nix { pname = "nvim-gps"; - version = "2021-10-13"; + version = "2021-11-12"; src = fetchFromGitHub { owner = "smiteshp"; repo = "nvim-gps"; - rev = "5576661c8ddd3c881b5f97446b919090033ce74f"; - sha256 = "1zvbiys1wgyc5figabw9p8dvz3jj756wgjdjg7k44cfn5c0vld42"; + rev = "6ccc6b7853e24f1ba987c61e7a9dd7f1046b2af8"; + sha256 = "1740xic22cd1lrpz1d6y55ab6s1phvqfp7iwg9bwj26x8x8gi392"; }; meta.homepage = "https://github.com/smiteshp/nvim-gps/"; }; nvim-highlite = buildVimPluginFrom2Nix { pname = "nvim-highlite"; - version = "2021-10-10"; + version = "2021-11-11"; src = fetchFromGitHub { owner = "Iron-E"; repo = "nvim-highlite"; - rev = "50fa45e42a2cedf14e9d406ec7f1e68270c7f467"; - sha256 = "0q9llakdn52qdcqx2zv5byszvyadfh0kgzqv2zdjf5qffvbg9hl3"; + rev = "c0f6d68ea245fd2efb527fe1b7874c48084d8150"; + sha256 = "1nai09x1sc9wvz2m5j4rj6wjpdhwk88v4sapdmvb5pqvrqqylg60"; }; meta.homepage = "https://github.com/Iron-E/nvim-highlite/"; }; nvim-hlslens = buildVimPluginFrom2Nix { pname = "nvim-hlslens"; - version = "2021-10-17"; + version = "2021-11-03"; src = fetchFromGitHub { owner = "kevinhwang91"; repo = "nvim-hlslens"; - rev = "5217443bb675539d87b90133a91a7e36ad1e517d"; - sha256 = "17p3x7s50r5fj1fhzx7nm7hk81h85hihk6svsgp99a1cjys6w9zk"; + rev = "4eec69c189a170bb99825e70f39c321da7baf67f"; + sha256 = "0kwvwx2qvxgzfgzk9qp6ci0436qmcpkxxs0l2l8lyx9qghh5rbv4"; }; meta.homepage = "https://github.com/kevinhwang91/nvim-hlslens/"; }; @@ -4260,12 +4320,12 @@ final: prev: nvim-jdtls = buildVimPluginFrom2Nix { pname = "nvim-jdtls"; - version = "2021-10-18"; + version = "2021-11-02"; src = fetchFromGitHub { owner = "mfussenegger"; repo = "nvim-jdtls"; - rev = "914530792c9fbe4c87eca4aa6d4eebe8fe46717c"; - sha256 = "0wkv5vwmwq9ij7h23qfzwv81f0z585w6q8i0qliizszfiik15lph"; + rev = "aac715eedc278b437d6885c7171f8bdec6e1d6ea"; + sha256 = "1vr119w5vcid59rz4vspk3gszcv91aps0ig36ysirhnqmz1j29di"; }; meta.homepage = "https://github.com/mfussenegger/nvim-jdtls/"; }; @@ -4284,24 +4344,24 @@ final: prev: nvim-lsp-ts-utils = buildVimPluginFrom2Nix { pname = "nvim-lsp-ts-utils"; - version = "2021-10-21"; + version = "2021-11-11"; src = fetchFromGitHub { owner = "jose-elias-alvarez"; repo = "nvim-lsp-ts-utils"; - rev = "ab8d54f206cff9fc7e686407be1c02ee58a3727f"; - sha256 = "05npzvf40w0z0n2snn15vr055gkxhvyrhg451yppzqnx1af10skx"; + rev = "1af2922c3ab7f80654c09932c55bd5d70f13f1e3"; + sha256 = "1qcska723k2ajimmib7i57clhdbrbqlcp4b18capsrrnxsl92pq0"; }; meta.homepage = "https://github.com/jose-elias-alvarez/nvim-lsp-ts-utils/"; }; nvim-lspconfig = buildVimPluginFrom2Nix { pname = "nvim-lspconfig"; - version = "2021-10-24"; + version = "2021-11-12"; src = fetchFromGitHub { owner = "neovim"; repo = "nvim-lspconfig"; - rev = "7dc04ca9ae28bded22f4c78cb29dce09b6643f38"; - sha256 = "0bs66idzq4f0infbazr1w1pl9h2chm13lds06znxvfgi30ispd32"; + rev = "98db21bbd4ef6f2bcd30903e32529976c1db33c5"; + sha256 = "18jnrnf6sgqmvsmql27yd8zi7n0plh69fiycw3gv7qf5fy29gvif"; }; meta.homepage = "https://github.com/neovim/nvim-lspconfig/"; }; @@ -4332,12 +4392,12 @@ final: prev: nvim-notify = buildVimPluginFrom2Nix { pname = "nvim-notify"; - version = "2021-10-22"; + version = "2021-11-02"; src = fetchFromGitHub { owner = "rcarriga"; repo = "nvim-notify"; - rev = "8b2ef65a6e9f7060cba82bcd7eab1d626f5bfb3f"; - sha256 = "0yhj3p3zsyxxwjj2p0h7aymgn1wsaa8999r8s58w76pvh6syg0ca"; + rev = "ee79a5e2f8bde0ebdf99880a98d1312da83a3caa"; + sha256 = "1krpd6jqy73kqf63yyyp4crkrnb80hi23wks6rf31mag6ry1xr27"; }; meta.homepage = "https://github.com/rcarriga/nvim-notify/"; }; @@ -4368,24 +4428,24 @@ final: prev: nvim-solarized-lua = buildVimPluginFrom2Nix { pname = "nvim-solarized-lua"; - version = "2021-10-23"; + version = "2021-11-10"; src = fetchFromGitHub { owner = "ishan9299"; repo = "nvim-solarized-lua"; - rev = "39ed6d841a71de0fcc51d6665638e864e42116cb"; - sha256 = "11v8vxz3daj2sl13hgvd8cadh7h5kij5kg43km917an5k1cw293j"; + rev = "05433b58825e13465b82430f2cc7b0414df2ba6c"; + sha256 = "1w2n8zj17dj87xfbacz9kgkcws2cihnfa3640s6393gli20782kq"; }; meta.homepage = "https://github.com/ishan9299/nvim-solarized-lua/"; }; nvim-spectre = buildVimPluginFrom2Nix { pname = "nvim-spectre"; - version = "2021-09-28"; + version = "2021-11-10"; src = fetchFromGitHub { owner = "windwp"; repo = "nvim-spectre"; - rev = "b755466cb3efe2b8c2c0e5f06f850b49b7ac2e79"; - sha256 = "0xn6n01s9smhpwl4w1d8i2hhwckw2slaq9pdyl2gm2dpmvk7sb2f"; + rev = "9502f162a43d18d03f6d11e2152aee39b1ed5adb"; + sha256 = "1czj2jbls3ci35mbvvzb7x2zzh3aw2rz42bvfx45ibpw6iabdgky"; }; meta.homepage = "https://github.com/windwp/nvim-spectre/"; }; @@ -4404,12 +4464,12 @@ final: prev: nvim-tree-lua = buildVimPluginFrom2Nix { pname = "nvim-tree.lua"; - version = "2021-10-24"; + version = "2021-10-31"; src = fetchFromGitHub { owner = "kyazdani42"; repo = "nvim-tree.lua"; - rev = "fd3969ec986d739d9ab01b8ec5de051c45b475d2"; - sha256 = "05d4d0x2cgls4a9j9r3gxkvyq2l66qfw5yxx9qzvnp06852j2azl"; + rev = "5d8453dfbd34ab00cb3e8ce39660f9a54cdd35f3"; + sha256 = "1r2qzajbraqv244kqd006f6rz586rdppi94wssvx8b03v56v8nb7"; }; meta.homepage = "https://github.com/kyazdani42/nvim-tree.lua/"; }; @@ -4476,24 +4536,24 @@ final: prev: nvim-ts-context-commentstring = buildVimPluginFrom2Nix { pname = "nvim-ts-context-commentstring"; - version = "2021-09-09"; + version = "2021-11-09"; src = fetchFromGitHub { owner = "joosepalviste"; repo = "nvim-ts-context-commentstring"; - rev = "a2283cfc9f4aa892349004153ab54dfe8911241c"; - sha256 = "1zf9jfzxpc9n7vd40lm8c8yys8lsyq0rnv9ywwdwsfai4pjj3x0z"; + rev = "ce74852c36008b11dda451bfe6c2ed71c535152b"; + sha256 = "04hd5wg3f39sn4qc958fw9inmkaj18mkgvmwkxni4qnb2y8qs9pi"; }; meta.homepage = "https://github.com/joosepalviste/nvim-ts-context-commentstring/"; }; nvim-ts-rainbow = buildVimPluginFrom2Nix { pname = "nvim-ts-rainbow"; - version = "2021-10-21"; + version = "2021-11-10"; src = fetchFromGitHub { owner = "p00f"; repo = "nvim-ts-rainbow"; - rev = "3e6597b4e560404ef5d2f1d5fb0ce3307b5d57f7"; - sha256 = "0kkk16yl219p6p6bvyfgsipfsh1s15l2p80c2x88wqjvpk78wxmw"; + rev = "5cef624eb407449a313b63cdda66720e9860821f"; + sha256 = "0r39ahrk54smb9ngb4s11kxjncrsarclrdjvaazdi82260saxgb9"; }; meta.homepage = "https://github.com/p00f/nvim-ts-rainbow/"; }; @@ -4536,12 +4596,12 @@ final: prev: nvim_context_vt = buildVimPluginFrom2Nix { pname = "nvim_context_vt"; - version = "2021-08-31"; + version = "2021-11-09"; src = fetchFromGitHub { owner = "haringsrob"; repo = "nvim_context_vt"; - rev = "df026a7186e33e20c4b8f98f8f94a5caecc345af"; - sha256 = "0lxkmld4rg3vzxbx23v3r3hxkgj572kngddvy4l83068gwmdr08m"; + rev = "8db258aeff84adee646afab970980c745286a1e6"; + sha256 = "0jbkms1alssp9399nhbzilqap0yji6sxpy207v3vmk1haf27cqz4"; }; meta.homepage = "https://github.com/haringsrob/nvim_context_vt/"; }; @@ -4608,12 +4668,12 @@ final: prev: onedarkpro-nvim = buildVimPluginFrom2Nix { pname = "onedarkpro.nvim"; - version = "2021-10-24"; + version = "2021-11-08"; src = fetchFromGitHub { owner = "olimorris"; repo = "onedarkpro.nvim"; - rev = "7d5dbd596e359e9402fa8f06753458c0fc77342a"; - sha256 = "0klp9pj75rlka5qizc5jyikffikxcxr5987snapc6ra52f9ik2qi"; + rev = "9015d8a1313b16cf3792830eb8d77553765adb80"; + sha256 = "19mhfr8ih2hp9jadgphwq0g576qsbnggiknv6ipkl60d8jrhxflk"; }; meta.homepage = "https://github.com/olimorris/onedarkpro.nvim/"; }; @@ -4656,24 +4716,36 @@ final: prev: orgmode-nvim = buildVimPluginFrom2Nix { pname = "orgmode.nvim"; - version = "2021-10-19"; + version = "2021-11-10"; src = fetchFromGitHub { owner = "kristijanhusak"; repo = "orgmode.nvim"; - rev = "7592652e72cb1a69bd147e118fc05d373f09045b"; - sha256 = "12r73q94m5cpgdm7rslz7p214nwlrhzm1rnvlbhhmvm3mq1g68ij"; + rev = "93779c1eed34da14ab8082933fb1e3d47869d07f"; + sha256 = "145460q9a9f4jp8l8pfqi5rf12vvz05g4jfd70h65i7i55l2v37j"; }; meta.homepage = "https://github.com/kristijanhusak/orgmode.nvim/"; }; + package-info-nvim = buildVimPluginFrom2Nix { + pname = "package-info.nvim"; + version = "2021-11-09"; + src = fetchFromGitHub { + owner = "vuki656"; + repo = "package-info.nvim"; + rev = "037bedfa881d60f0ece93c31f31d04cf3ca29a87"; + sha256 = "0gflgccj0ymgv89paq9dp54f56g0wwz7m56sdfdycjii491q5hm4"; + }; + meta.homepage = "https://github.com/vuki656/package-info.nvim/"; + }; + packer-nvim = buildVimPluginFrom2Nix { pname = "packer.nvim"; - version = "2021-10-19"; + version = "2021-11-03"; src = fetchFromGitHub { owner = "wbthomason"; repo = "packer.nvim"; - rev = "797f15afd80dcfe213d421e969f9f5f62af3a728"; - sha256 = "1zi6f7yabz9bvzyj2zwrl5fwbnzjhalacqznj09n8a4l0gxm0x7j"; + rev = "7f62848f3a92eac61ae61def5f59ddb5e2cc6823"; + sha256 = "1sgrwm271pnvw9anl1y8x94bz0w7qvi3bdiqh1wpwvsqic73frq3"; }; meta.homepage = "https://github.com/wbthomason/packer.nvim/"; }; @@ -4776,12 +4848,12 @@ final: prev: plenary-nvim = buildVimPluginFrom2Nix { pname = "plenary.nvim"; - version = "2021-10-24"; + version = "2021-11-08"; src = fetchFromGitHub { owner = "nvim-lua"; repo = "plenary.nvim"; - rev = "b8c8d23c453b73856a4857da8f35a9219c8b0ba0"; - sha256 = "1vnlq4xhpl30zmm3qawz21bs2ndn7qfizn9s011yqc76jbnk5w89"; + rev = "b42e0cfe22ad3a0cac35cf14315e9dc22cea2ec9"; + sha256 = "09is80vcmnp0w42nahsqwliiyiyv64s9x459rl2dk4mnr7hgi7fm"; }; meta.homepage = "https://github.com/nvim-lua/plenary.nvim/"; }; @@ -4969,12 +5041,12 @@ final: prev: rainbow = buildVimPluginFrom2Nix { pname = "rainbow"; - version = "2021-10-25"; + version = "2021-11-08"; src = fetchFromGitHub { owner = "luochen1990"; repo = "rainbow"; - rev = "54c79a24725af3a15d3aad20f70a56c7abbd46c3"; - sha256 = "1bd8nqlcyhxxf02p4a16gayqkdh1010b7mnlfvzy69iaf2xclyx5"; + rev = "f1cb0d3d4a4785428f7ccec9f0e69ad314d748d9"; + sha256 = "15227jrbhagbyvd56cq1byc32hwgbsh293r9fb96419pa3rm9j1l"; }; meta.homepage = "https://github.com/luochen1990/rainbow/"; }; @@ -5053,12 +5125,12 @@ final: prev: refactoring-nvim = buildVimPluginFrom2Nix { pname = "refactoring.nvim"; - version = "2021-10-20"; + version = "2021-11-12"; src = fetchFromGitHub { owner = "theprimeagen"; repo = "refactoring.nvim"; - rev = "b572093519ccfae919e8d0d1e85fbbd11a1b127c"; - sha256 = "1n7qi7xsg34x3dgbl5qbmsgkfdrscgfddn2rpimvcc6krdr1jzn2"; + rev = "2fbbae64c6c27dfab5c9fae2e520bef9f778bdd8"; + sha256 = "02mi4jbpiya3sdx1f69wyhilmjis5w7bqx562335xmw7z84ksmz7"; }; meta.homepage = "https://github.com/theprimeagen/refactoring.nvim/"; }; @@ -5113,12 +5185,12 @@ final: prev: rnvimr = buildVimPluginFrom2Nix { pname = "rnvimr"; - version = "2021-10-21"; + version = "2021-11-04"; src = fetchFromGitHub { owner = "kevinhwang91"; repo = "rnvimr"; - rev = "58fe5d6fae9a56e8d16a5184a12eff322803108d"; - sha256 = "0q5pji0iwawzqq0g97vd816bj6p8p8i59wwlwvc0vnf21cfrmymz"; + rev = "ded689fbf40d8ab939d2596427cdb623fbc0e88d"; + sha256 = "0jd3ffkgmcl2brdgz68zdwaifgfvvph3j58xmm4yq8dpl1h7k4xr"; }; meta.homepage = "https://github.com/kevinhwang91/rnvimr/"; }; @@ -5135,6 +5207,18 @@ final: prev: meta.homepage = "https://github.com/mfukar/robotframework-vim/"; }; + ron-vim = buildVimPluginFrom2Nix { + pname = "ron.vim"; + version = "2020-08-22"; + src = fetchFromGitHub { + owner = "ron-rs"; + repo = "ron.vim"; + rev = "04004b3395d219f95a533c4badd5ba831b7b7c07"; + sha256 = "1xlr8slwcr6b9p33awf8xzdp04myv6dcsxwi50val4vzvzcgyrcl"; + }; + meta.homepage = "https://github.com/ron-rs/ron.vim/"; + }; + rspec-vim = buildVimPluginFrom2Nix { pname = "rspec.vim"; version = "2020-08-20"; @@ -5161,12 +5245,12 @@ final: prev: rust-tools-nvim = buildVimPluginFrom2Nix { pname = "rust-tools.nvim"; - version = "2021-10-22"; + version = "2021-11-12"; src = fetchFromGitHub { owner = "simrat39"; repo = "rust-tools.nvim"; - rev = "04e471c8ba7b32ebc2a127ed7cb8a9e48788a898"; - sha256 = "1h38zxnsdzswrdibwlxadb7ba6207n3v4q1lxi8k702z8p6ls5p6"; + rev = "edbaeefde4f1619e51c73a4d5126b09caf66c4e6"; + sha256 = "0qzbbsqa1yxvldl3lw29pc4lwkylq4g2iymw9myfc2665b6ax4xb"; }; meta.homepage = "https://github.com/simrat39/rust-tools.nvim/"; }; @@ -5207,6 +5291,18 @@ final: prev: meta.homepage = "https://github.com/saltstack/salt-vim/"; }; + SchemaStore-nvim = buildVimPluginFrom2Nix { + pname = "SchemaStore.nvim"; + version = "2021-11-09"; + src = fetchFromGitHub { + owner = "b0o"; + repo = "SchemaStore.nvim"; + rev = "6b3ec7db13a9935d5d948fb0985707181e07979d"; + sha256 = "18inch8c1n9b835igw8brvmxh4c8pl9cq8qiv3v64fry2pv59mqd"; + }; + meta.homepage = "https://github.com/b0o/SchemaStore.nvim/"; + }; + scrollbar-nvim = buildVimPluginFrom2Nix { pname = "scrollbar.nvim"; version = "2021-06-04"; @@ -5269,12 +5365,12 @@ final: prev: seoul256-vim = buildVimPluginFrom2Nix { pname = "seoul256.vim"; - version = "2020-06-21"; + version = "2021-11-08"; src = fetchFromGitHub { owner = "junegunn"; repo = "seoul256.vim"; - rev = "24ed467ca6ef9ce7ede56c9ffb1c6b30cd0ee906"; - sha256 = "0ihs5nxdyx3jr1n96l2yx4b5gc48x7qbyxv6dc53ihw2vpn783fx"; + rev = "538742074ec5cac2e84c383f02b85b368d35df9c"; + sha256 = "0pcgx5ng3snfvcspfi62qbsg5pd10y79r3j21cn1g5rr5ck7zl7a"; }; meta.homepage = "https://github.com/junegunn/seoul256.vim/"; }; @@ -5330,12 +5426,12 @@ final: prev: SimpylFold = buildVimPluginFrom2Nix { pname = "SimpylFold"; - version = "2020-09-09"; + version = "2021-11-04"; src = fetchFromGitHub { owner = "tmhedberg"; repo = "SimpylFold"; - rev = "0459df8a0bbfc8ef1bfd88db889e881626f65914"; - sha256 = "1lydkm86d84fsmbklwcgnlb95vczri9a8d898hrnfvskyx050y2w"; + rev = "b4a87e509c3d873238a39d1c85d0b97d6819f283"; + sha256 = "0ff5x7ay67wn9c0mi8sb6110i93zrf97c4whg0bd7pr2nmadpvk0"; }; meta.homepage = "https://github.com/tmhedberg/SimpylFold/"; }; @@ -5390,12 +5486,12 @@ final: prev: snap = buildVimPluginFrom2Nix { pname = "snap"; - version = "2021-07-04"; + version = "2021-11-01"; src = fetchFromGitHub { owner = "camspiers"; repo = "snap"; - rev = "4ed8f920f437138b7da38d5ad9003a1e2ca2ddb3"; - sha256 = "15cxx8yz522kb8wdgcs95irqy7hlfniipzyxyd16hg69wycl64gx"; + rev = "500f97650136d4c5a00179d7f80dd614e13efdbe"; + sha256 = "0gqqrci4wz6f19afg60hfbb54yj824nfar0n69gfj4sra7wjgqix"; }; meta.homepage = "https://github.com/camspiers/snap/"; }; @@ -5414,12 +5510,12 @@ final: prev: sonokai = buildVimPluginFrom2Nix { pname = "sonokai"; - version = "2021-10-13"; + version = "2021-11-11"; src = fetchFromGitHub { owner = "sainnhe"; repo = "sonokai"; - rev = "995c6d30ac2846c8230488246057c1ad1aa0b908"; - sha256 = "0vbw5sbm1ldqb38g5if1p1wn41n1vra6lnqc1crz4vl3wiqra6v5"; + rev = "30dd4ae6f844ab0f53ba93eea61068f87886eb03"; + sha256 = "0hwcar6c6n3fvli9pmx1ycvk4128f47hl07c7y7hxzy2rks7s3j8"; }; meta.homepage = "https://github.com/sainnhe/sonokai/"; }; @@ -5522,12 +5618,12 @@ final: prev: splitjoin-vim = buildVimPluginFrom2Nix { pname = "splitjoin.vim"; - version = "2021-10-03"; + version = "2021-11-03"; src = fetchFromGitHub { owner = "AndrewRadev"; repo = "splitjoin.vim"; - rev = "48af03733f4e7a7d0449fdbb15aa70539faef7ad"; - sha256 = "0z5vcjfnrs18plcqy311qwrl1l4h9xi4r3fbijc8ald38hw6p7dk"; + rev = "0f45bfd7d6a8acb7d6ac126001a27190851bf3f5"; + sha256 = "1a5y8qj8gyrmaxh4si3k30v19yh8chws4h9k41ra1jzslrilm9ai"; fetchSubmodules = true; }; meta.homepage = "https://github.com/AndrewRadev/splitjoin.vim/"; @@ -5569,6 +5665,18 @@ final: prev: meta.homepage = "https://github.com/chr4/sslsecure.vim/"; }; + stabilize-nvim = buildVimPluginFrom2Nix { + pname = "stabilize.nvim"; + version = "2021-11-11"; + src = fetchFromGitHub { + owner = "luukvbaal"; + repo = "stabilize.nvim"; + rev = "10bb37c82e94122be082651ee6ee58b5b2e51cb5"; + sha256 = "0667yh9yprym7vakm83x174srb2x2ch9q97137qlj28acks3wnqh"; + }; + meta.homepage = "https://github.com/luukvbaal/stabilize.nvim/"; + }; + stan-vim = buildVimPluginFrom2Nix { pname = "stan-vim"; version = "2021-05-28"; @@ -5667,12 +5775,12 @@ final: prev: syntastic = buildVimPluginFrom2Nix { pname = "syntastic"; - version = "2021-10-18"; + version = "2021-11-11"; src = fetchFromGitHub { owner = "vim-syntastic"; repo = "syntastic"; - rev = "d086f49d389e1c2d58211b1f92cf20c9f63dc325"; - sha256 = "0cnd2m1dnx69657dpckiiy1slx2fpnpggm3qs0nzm5rm3qpzx185"; + rev = "2c4b33f6e6679fb5f3824d9cd38d4813c71a19a3"; + sha256 = "18lb4rs9zrgn35b2x6b7pycd3h64virkadlidcy3xhzhsynlvwgr"; }; meta.homepage = "https://github.com/vim-syntastic/syntastic/"; }; @@ -5933,12 +6041,12 @@ final: prev: telescope-nvim = buildVimPluginFrom2Nix { pname = "telescope.nvim"; - version = "2021-10-24"; + version = "2021-11-10"; src = fetchFromGitHub { owner = "nvim-telescope"; repo = "telescope.nvim"; - rev = "782d802d44077e07f80189560f91c86370f11e39"; - sha256 = "12ycl2mf1k838aj566zrzisvsl5050iwqjnqz002hg5qpvphc48y"; + rev = "f3ef5920725d719ed23195a457a86015826d3e1d"; + sha256 = "1dhczp84lhsz1ikqprg552wqi0hncigvhfb726iz01cr9y25b8mg"; }; meta.homepage = "https://github.com/nvim-telescope/telescope.nvim/"; }; @@ -6078,12 +6186,12 @@ final: prev: toggleterm-nvim = buildVimPluginFrom2Nix { pname = "toggleterm.nvim"; - version = "2021-09-28"; + version = "2021-11-07"; src = fetchFromGitHub { owner = "akinsho"; repo = "toggleterm.nvim"; - rev = "9cdc5e9bb2affb25af5d4bda930738144193bd36"; - sha256 = "0mnixgkckq1miw8cdg3887hc43l1qkjjkk2bk8idvyp6y7z8y29i"; + rev = "0b6d65d8b45e261bc17176e86abb3f631c88fc1b"; + sha256 = "07qj7z2rrdz2n5gks7nh1xvapvdc5s641vsvg0nm54q4y72lp2ds"; }; meta.homepage = "https://github.com/akinsho/toggleterm.nvim/"; }; @@ -6306,12 +6414,12 @@ final: prev: vifm-vim = buildVimPluginFrom2Nix { pname = "vifm.vim"; - version = "2021-10-07"; + version = "2021-11-04"; src = fetchFromGitHub { owner = "vifm"; repo = "vifm.vim"; - rev = "8b8b5541fa35cd39c652e451796589ff0bf289cc"; - sha256 = "02451hgzyjrjkidsjycsxvbwr3wi350dns6swfyfalyix76fhfsw"; + rev = "7aee389c0ada5677eff5872195c0e3a47c20cb76"; + sha256 = "17hph035igj8b0m8dc3qw76w7mq47rzbm7n513npfy367vicably"; }; meta.homepage = "https://github.com/vifm/vifm.vim/"; }; @@ -6570,12 +6678,12 @@ final: prev: vim-airline = buildVimPluginFrom2Nix { pname = "vim-airline"; - version = "2021-09-21"; + version = "2021-11-12"; src = fetchFromGitHub { owner = "vim-airline"; repo = "vim-airline"; - rev = "26f922753a288df639b8d05d13ed62b9b04a26bc"; - sha256 = "0ikjcdx7c0k8skl6mwywpnqdprp64fhvpkvzz0v95s1p7pmjbl83"; + rev = "4b96f58902a34abda87fd3105e9d47a08801a891"; + sha256 = "05fn2485098kml90n5wc0qla7wwjcrz0lkhkr9qgdv4bvc9g3hyn"; }; meta.homepage = "https://github.com/vim-airline/vim-airline/"; }; @@ -6702,12 +6810,12 @@ final: prev: vim-autoformat = buildVimPluginFrom2Nix { pname = "vim-autoformat"; - version = "2021-10-07"; + version = "2021-11-07"; src = fetchFromGitHub { owner = "vim-autoformat"; repo = "vim-autoformat"; - rev = "d8a6962524ed4afbf7c92e7678bacf91d66f097d"; - sha256 = "0sscvgj6fwa9yy2p999rr7chp1xgg8japzwpfwwnzw77x3ikv3cp"; + rev = "bb11f30377985e45e2eecef570856d42dbabb8b0"; + sha256 = "1lx5lrb0hjijvwngvgsgchww70c1bgqf5qxj8lhvk11dvxn3k087"; }; meta.homepage = "https://github.com/vim-autoformat/vim-autoformat/"; }; @@ -6894,24 +7002,24 @@ final: prev: vim-clang-format = buildVimPluginFrom2Nix { pname = "vim-clang-format"; - version = "2019-05-15"; + version = "2021-11-11"; src = fetchFromGitHub { owner = "rhysd"; repo = "vim-clang-format"; - rev = "95593b67723f23979cd7344ecfd049f2f917830f"; - sha256 = "0n0k13k63l8n0ixs4zrhlz923apvdp2mldadxqlhmvsvncmlqmpn"; + rev = "261d02c305f3ed361c39e3b9ca5d66b5b45df4c7"; + sha256 = "1lbfxb91s3951j3zhpmc7jj8xnsd2qcrd6d5xm35xarcsxwl5rvh"; }; meta.homepage = "https://github.com/rhysd/vim-clang-format/"; }; vim-clap = buildVimPluginFrom2Nix { pname = "vim-clap"; - version = "2021-10-19"; + version = "2021-11-02"; src = fetchFromGitHub { owner = "liuchengxu"; repo = "vim-clap"; - rev = "582ced5e7b75d68418ae893b346aac3123b9a31e"; - sha256 = "1541mv5ivqj6nf79csr39pg03bm65fn9agw1wmikph3afplwx96c"; + rev = "72e1f7b1e35b6f79708e004367546701e646d64d"; + sha256 = "19zlfjwzalrm8i6ilgm7pidcji9qk1i1acsysl87d2h5gpqqd6v5"; }; meta.homepage = "https://github.com/liuchengxu/vim-clap/"; }; @@ -7031,7 +7139,7 @@ final: prev: owner = "flazz"; repo = "vim-colorschemes"; rev = "fd8f122cef604330c96a6a6e434682dbdfb878c9"; - sha256 = "1cg8q7w0vgl73aw1b9zz0zh5vw5d2pm8pm54fhfzva4azg56f416"; + sha256 = "0kpsf6j20fgblc8vhqn7ymr52v2d1h52vc7rbxmxfwdm80nvv3g5"; }; meta.homepage = "https://github.com/flazz/vim-colorschemes/"; }; @@ -7710,16 +7818,28 @@ final: prev: vim-fugitive = buildVimPluginFrom2Nix { pname = "vim-fugitive"; - version = "2021-10-19"; + version = "2021-11-11"; src = fetchFromGitHub { owner = "tpope"; repo = "vim-fugitive"; - rev = "30933405bbc77877d714260f4ad1cd4dadf34532"; - sha256 = "147dpafl5g5h1y47gry26lqw6b7c480qddam1l5npp5bnv58swv4"; + rev = "2e4ee0b5d6e61c6b3bc48e844343f89615dfc6e0"; + sha256 = "0ibks13hicpv5syk6lgrzjfbacwxfp02cmp23ry8wjm2dkzmv81s"; }; meta.homepage = "https://github.com/tpope/vim-fugitive/"; }; + vim-fzf-coauthorship = buildVimPluginFrom2Nix { + pname = "vim-fzf-coauthorship"; + version = "2021-07-14"; + src = fetchFromGitHub { + owner = "maxjacobson"; + repo = "vim-fzf-coauthorship"; + rev = "c5df55743a274a2c2d6370008f199176dabae0bd"; + sha256 = "0v52w9jiyg0q6fmsh0dq8gd6m48vhhj2fy95v7lvqyr7pnr1wqaa"; + }; + meta.homepage = "https://github.com/maxjacobson/vim-fzf-coauthorship/"; + }; + vim-gh-line = buildVimPluginFrom2Nix { pname = "vim-gh-line"; version = "2021-03-25"; @@ -7746,12 +7866,12 @@ final: prev: vim-gist = buildVimPluginFrom2Nix { pname = "vim-gist"; - version = "2020-10-04"; + version = "2021-11-04"; src = fetchFromGitHub { owner = "mattn"; repo = "vim-gist"; - rev = "4a210316550577c1b6a5cb13b09ce79fba602b9c"; - sha256 = "1c3k2yfaxijg0c8fvh70jqmrc6zyhh57hid7rm77v2kymvimvazg"; + rev = "34e0f0aad5cc21cb3087a5d92ae1aa108019ecda"; + sha256 = "1dlsml47nh2mdllahh2nicnpqxk271p62cp3xsjd4dbbr0lallds"; }; meta.homepage = "https://github.com/mattn/vim-gist/"; }; @@ -7842,12 +7962,12 @@ final: prev: vim-go = buildVimPluginFrom2Nix { pname = "vim-go"; - version = "2021-10-23"; + version = "2021-11-08"; src = fetchFromGitHub { owner = "fatih"; repo = "vim-go"; - rev = "2831f4872431685d28fbe3e567cd539a455fe750"; - sha256 = "1cirvsx7z6qnqp8nq6iidy881kzkz6bfck1zkdrwss8skhjpw1hc"; + rev = "96b74acc8747d667247fd8d30eb15f6b44778f6f"; + sha256 = "1cd5kzjsylg5if1fqs7ll5s47jmmbhpw3dxn1k7cyf9wkkmy0di8"; }; meta.homepage = "https://github.com/fatih/vim-go/"; }; @@ -8251,12 +8371,12 @@ final: prev: vim-javacomplete2 = buildVimPluginFrom2Nix { pname = "vim-javacomplete2"; - version = "2021-08-21"; + version = "2021-11-09"; src = fetchFromGitHub { owner = "artur-shaik"; repo = "vim-javacomplete2"; - rev = "54a4b02edef78509621d180794df0c6924e48b3b"; - sha256 = "08hi6r1cspkklir9qa6x4h4a3zs404hvcwsspylysv7asnv8jncf"; + rev = "19aec7d63eda429d056586d9bcc98f61f860c668"; + sha256 = "055f58342ai117gq0021zwhv8ck5sca8bxrqqixbv5cjywck0r17"; }; meta.homepage = "https://github.com/artur-shaik/vim-javacomplete2/"; }; @@ -8420,12 +8540,12 @@ final: prev: vim-lawrencium = buildVimPluginFrom2Nix { pname = "vim-lawrencium"; - version = "2020-10-10"; + version = "2021-11-08"; src = fetchFromGitHub { owner = "ludovicchabant"; repo = "vim-lawrencium"; - rev = "4592f24a50386e02870fa8d508cc7ba8454dc102"; - sha256 = "158hslq4chlqr9mhdpcrbxnygjk4j1pc2caqc3zrwqh9qdk8mvha"; + rev = "eee52c9da9a58c1f079adb4a3134a0620bc6e945"; + sha256 = "12431h344dhjswg0pm8nvfszy8hp8b61nm0r8gsry9a6w1j1a86b"; }; meta.homepage = "https://github.com/ludovicchabant/vim-lawrencium/"; }; @@ -8516,12 +8636,12 @@ final: prev: vim-localvimrc = buildVimPluginFrom2Nix { pname = "vim-localvimrc"; - version = "2021-09-06"; + version = "2021-11-01"; src = fetchFromGitHub { owner = "embear"; repo = "vim-localvimrc"; - rev = "e7acc32cdc1b70db0d42856ecde9ccf362720bd5"; - sha256 = "02giz39c5qdsvsfdfydyz9a6dznh82x84mm2acblyw4hhx5yvpcq"; + rev = "f09bf7c61e4aa03293622792eaeadb315b91e77f"; + sha256 = "0rskyxi507b339ipgam3kbf4ymj6bcbw75xpc2cf32xzdlpairln"; }; meta.homepage = "https://github.com/embear/vim-localvimrc/"; }; @@ -8564,12 +8684,12 @@ final: prev: vim-lsp = buildVimPluginFrom2Nix { pname = "vim-lsp"; - version = "2021-09-28"; + version = "2021-11-02"; src = fetchFromGitHub { owner = "prabirshrestha"; repo = "vim-lsp"; - rev = "7b9da239da68e21aacc96cb77b44b5a669038b2b"; - sha256 = "13kh5r8cxinir5xmdk3avag9jgxn7jap71as55iafkf8zr4kk7mr"; + rev = "0c8a35d899202f7a7d94aefd290f3c7a1590e9c5"; + sha256 = "02h2z8j1w083hjvgafxrclz0a1r2q4lrsc56yllswpk8yq1x30pb"; }; meta.homepage = "https://github.com/prabirshrestha/vim-lsp/"; }; @@ -8673,12 +8793,12 @@ final: prev: vim-matchup = buildVimPluginFrom2Nix { pname = "vim-matchup"; - version = "2021-10-21"; + version = "2021-11-05"; src = fetchFromGitHub { owner = "andymass"; repo = "vim-matchup"; - rev = "42c91ec8cc69f47c384c9b9e0aa12918da2e313c"; - sha256 = "151xx3v95g0qlvxc8k52crnvakvjf0yq25qygwbp5bwh1jf1fbkd"; + rev = "50cadec5e6fbc3e3e30ef2057d169cbc61a6ae9c"; + sha256 = "1kz0i4sir8fa42m606bcspf0alkvwz91xi2z9a9c64r9b3ixdpmr"; }; meta.homepage = "https://github.com/andymass/vim-matchup/"; }; @@ -8793,12 +8913,12 @@ final: prev: vim-mundo = buildVimPluginFrom2Nix { pname = "vim-mundo"; - version = "2021-07-13"; + version = "2021-11-09"; src = fetchFromGitHub { owner = "simnalamburt"; repo = "vim-mundo"; - rev = "8b4bccebf7a16938c77073983d643ba22aa04079"; - sha256 = "11livwi2pvnrxj7mildh46a6rli6hibpbffc9a5q6vxkvn9s6v29"; + rev = "e193f185bad3aa58446e771f8f2739abf11d3262"; + sha256 = "1q2j88rcg0slvm2bfdri4fy42h5a2md9bbqsspb3kzx5yrhgawhp"; }; meta.homepage = "https://github.com/simnalamburt/vim-mundo/"; }; @@ -8925,12 +9045,12 @@ final: prev: vim-ocaml = buildVimPluginFrom2Nix { pname = "vim-ocaml"; - version = "2021-09-27"; + version = "2021-10-25"; src = fetchFromGitHub { owner = "ocaml"; repo = "vim-ocaml"; - rev = "71a92858d614e1682db36fc414ca54c7d7199a24"; - sha256 = "08q84zvj2mbkc0bxgyxzmkjd7j0jahbi4fhw5b2xjxdavi4f18n2"; + rev = "2ebddd0ef575193e2aac31172f8f3a5f543f530f"; + sha256 = "1n2k6picc99j5vs036mp2ws6v8iyal812k7s653zxv8qgvn676mi"; }; meta.homepage = "https://github.com/ocaml/vim-ocaml/"; }; @@ -9177,12 +9297,12 @@ final: prev: vim-phabricator = buildVimPluginFrom2Nix { pname = "vim-phabricator"; - version = "2020-09-16"; + version = "2021-11-06"; src = fetchFromGitHub { owner = "jparise"; repo = "vim-phabricator"; - rev = "d5c0571f44f2c44ba32df2d12e52b4dfcd4921ed"; - sha256 = "003zi8dvyyhvlb30zz8ah7iai8pmwmsk2jwa38386ff0jfm6dkpq"; + rev = "898c55068a2066973eafe2b2eba09d7c8db5dd98"; + sha256 = "1dzgfiiyfam2rzn69bn5agarw89rabbcx286q152bk3wym6bzj9s"; }; meta.homepage = "https://github.com/jparise/vim-phabricator/"; }; @@ -9417,12 +9537,12 @@ final: prev: vim-quickrun = buildVimPluginFrom2Nix { pname = "vim-quickrun"; - version = "2021-10-03"; + version = "2021-11-07"; src = fetchFromGitHub { owner = "thinca"; repo = "vim-quickrun"; - rev = "7745ddb2a48d6f3f2305a0ab83d22ce2c0ded677"; - sha256 = "09hnjcpd573v0cfsqp4a5fnqrj7chl80vb26nknh96ypg2iw455h"; + rev = "4f2f5628098efba5db2ae152dc3ac0d9b310659a"; + sha256 = "03db4xyzhsjdfa940bhkh7s8bka7rrpw6l1sscjk9s1mqs5ypjcl"; }; meta.homepage = "https://github.com/thinca/vim-quickrun/"; }; @@ -9561,12 +9681,12 @@ final: prev: vim-ruby = buildVimPluginFrom2Nix { pname = "vim-ruby"; - version = "2021-09-10"; + version = "2021-11-03"; src = fetchFromGitHub { owner = "vim-ruby"; repo = "vim-ruby"; - rev = "a2b8e9151a5a753fc93ed86e3d1e030c65553874"; - sha256 = "0mmzwqlfc3kc4fqrwy69p97nmdlscjxalnn552qdvbb1nvxv7czi"; + rev = "ee99a4cdb6931a5409b17c8f0f397a5c5dd6a035"; + sha256 = "0gg57jrsm86fhhyrw44pzm5jmnpllqm9sv2j0ajjkyxbzhb9m18m"; }; meta.homepage = "https://github.com/vim-ruby/vim-ruby/"; }; @@ -9633,12 +9753,12 @@ final: prev: vim-scriptease = buildVimPluginFrom2Nix { pname = "vim-scriptease"; - version = "2021-03-25"; + version = "2021-11-05"; src = fetchFromGitHub { owner = "tpope"; repo = "vim-scriptease"; - rev = "dbdc88f2ca38613a089354823fb2cec4d87d104d"; - sha256 = "0i89vrnfphr32qcix9ah9cf68xnw6n8jm03xmgys29gkfim4v7sq"; + rev = "710fe7c2f3c636fae0b5cac041ff8da028a0777f"; + sha256 = "0m3nsy0ks3rljwmaiygb4v3m58a2xnhavawzmms0fh1lsyyzcp1d"; }; meta.homepage = "https://github.com/tpope/vim-scriptease/"; }; @@ -9753,12 +9873,12 @@ final: prev: vim-slime = buildVimPluginFrom2Nix { pname = "vim-slime"; - version = "2021-03-04"; + version = "2021-11-03"; src = fetchFromGitHub { owner = "jpalardy"; repo = "vim-slime"; - rev = "a522fed677e50175f52efc5848cc35209af33216"; - sha256 = "0k4b629jn6xlxyjxdl3cgm06v9dmx967rqnslv5m82c9kscwpyh4"; + rev = "e80be3ba286ea83fe39d2261cdc74ed2ca5e951a"; + sha256 = "1qgrmsjcrfnkjh4an6m08x9anh2kjn4bx9mckr26mgskrglxykp9"; }; meta.homepage = "https://github.com/jpalardy/vim-slime/"; }; @@ -9837,12 +9957,12 @@ final: prev: vim-snippets = buildVimPluginFrom2Nix { pname = "vim-snippets"; - version = "2021-10-24"; + version = "2021-11-06"; src = fetchFromGitHub { owner = "honza"; repo = "vim-snippets"; - rev = "48863461962c731cc3f701abd558ccad73a30951"; - sha256 = "1nnn6wzppxxrb72gz1sfj1r9djs69fz5vk95xigk564sp70wn8cl"; + rev = "43ed873ba09ac2d71992e773c68c75c6b85686c7"; + sha256 = "02mdlicjzqqy40rsi8kkkix5ldj0fhbbbckr0yz4srnbw3wznsa8"; }; meta.homepage = "https://github.com/honza/vim-snippets/"; }; @@ -10017,12 +10137,12 @@ final: prev: vim-table-mode = buildVimPluginFrom2Nix { pname = "vim-table-mode"; - version = "2021-10-07"; + version = "2021-10-26"; src = fetchFromGitHub { owner = "dhruvasagar"; repo = "vim-table-mode"; - rev = "2e95bc699179f505d4b66b2904a475a3614cf8cb"; - sha256 = "1w4v4zmi714x54vkqfflvf4p56xpc8cd06skg1j6y3rnrvjqqx5d"; + rev = "01a395df00adbb57813e852f2e83ffb12375f1b6"; + sha256 = "1lrlwlrrvgbjlgdz1ywsz4ayhrrf905idkh6lh29j91m2118gvfj"; }; meta.homepage = "https://github.com/dhruvasagar/vim-table-mode/"; }; @@ -10078,12 +10198,12 @@ final: prev: vim-test = buildVimPluginFrom2Nix { pname = "vim-test"; - version = "2021-10-17"; + version = "2021-11-10"; src = fetchFromGitHub { owner = "vim-test"; repo = "vim-test"; - rev = "2052bd926c37b5c828dd07c47ac676102ca34a0e"; - sha256 = "1lyx57jryxx5r9s60hg3v6y0kx5p2qc408nl8zhffqhzzmxvkgp9"; + rev = "8d942aa3b0eea1d53cccd1ee87a241b651f485ee"; + sha256 = "03s5m19j19xjnwnfknfff4nj3wpzb11fbkf95bif1rrms9v8kw2i"; }; meta.homepage = "https://github.com/vim-test/vim-test/"; }; @@ -10258,12 +10378,12 @@ final: prev: vim-tpipeline = buildVimPluginFrom2Nix { pname = "vim-tpipeline"; - version = "2021-10-24"; + version = "2021-11-12"; src = fetchFromGitHub { owner = "vimpostor"; repo = "vim-tpipeline"; - rev = "7471de1e3d7db039886a2e6317513e21f9ad482a"; - sha256 = "0rdn4548za44kzyddh6w0kgjgdxvim0k2s3ap37c5g062vka4dj4"; + rev = "be9cd2c8cd007088f69019f18fb61aff457adb8c"; + sha256 = "1r2wvkgziil4bik3g7b19cscg17skhx98pgsvm2m00czrrfdxq6v"; }; meta.homepage = "https://github.com/vimpostor/vim-tpipeline/"; }; @@ -10318,12 +10438,12 @@ final: prev: vim-ultest = buildVimPluginFrom2Nix { pname = "vim-ultest"; - version = "2021-10-17"; + version = "2021-10-28"; src = fetchFromGitHub { owner = "rcarriga"; repo = "vim-ultest"; - rev = "71290da8930cddb946758e108f01a9546c5dda75"; - sha256 = "0jjb8b20dy65rjfmhhxq4jlcpdfqvmi4ianc6h2m6n08h5a4iw61"; + rev = "97afe58821129e88d420ca318fd171cc54518263"; + sha256 = "123rv36b5i84yk50xl5400za8g1pfypb2c5k3yv0pn0s4n0fm1pb"; }; meta.homepage = "https://github.com/rcarriga/vim-ultest/"; }; @@ -10414,12 +10534,12 @@ final: prev: vim-vsnip = buildVimPluginFrom2Nix { pname = "vim-vsnip"; - version = "2021-10-16"; + version = "2021-11-02"; src = fetchFromGitHub { owner = "hrsh7th"; repo = "vim-vsnip"; - rev = "32ddc125ec6f5a07fe59b3ab6b4b5f50093102ee"; - sha256 = "0jis4zxs1fjczyj9c38mbicsnpyvxr4hlxg0292zk6qhmgwd8dd6"; + rev = "4d57a1f4efce38e0d05196f9beba4bcc6e9d1ed5"; + sha256 = "0p6bqhddbqnfcd0wq1wy3ix082phhgiqrx593wq54fjx4wqg9xvi"; }; meta.homepage = "https://github.com/hrsh7th/vim-vsnip/"; }; @@ -10450,12 +10570,12 @@ final: prev: vim-wakatime = buildVimPluginFrom2Nix { pname = "vim-wakatime"; - version = "2021-09-27"; + version = "2021-11-05"; src = fetchFromGitHub { owner = "wakatime"; repo = "vim-wakatime"; - rev = "a59c321ed5043ccbd47b3d00185890fa13035ce3"; - sha256 = "1ni6hdqiwswg1f5igqxikk18n45p1rabzahx9zwz9dzk2clrinfs"; + rev = "2464b7a65c002b3ec92f8a8fc300d52582e9eefd"; + sha256 = "06i33hk0q41dvcr75kqq57jr88sqczqiwfhmssyxifhxfhcb6x2r"; }; meta.homepage = "https://github.com/wakatime/vim-wakatime/"; }; @@ -10486,12 +10606,12 @@ final: prev: vim-which-key = buildVimPluginFrom2Nix { pname = "vim-which-key"; - version = "2021-09-22"; + version = "2021-11-12"; src = fetchFromGitHub { owner = "liuchengxu"; repo = "vim-which-key"; - rev = "2c915b6de918c073fbd83809e51343651f00f9a8"; - sha256 = "05jdjmpyczcgqsm5mznyb79bq10ianv7v3rhxy9wrklkama3jrgs"; + rev = "7e3819a91a7710ce561a9c11a22a82b9437a2533"; + sha256 = "0hx5ar663ai25jj7p44sl2nn2n0jj2iif5ybx5ic7cxz4qy477wn"; }; meta.homepage = "https://github.com/liuchengxu/vim-which-key/"; }; @@ -10594,12 +10714,12 @@ final: prev: vim_current_word = buildVimPluginFrom2Nix { pname = "vim_current_word"; - version = "2021-09-26"; + version = "2021-11-09"; src = fetchFromGitHub { owner = "dominikduda"; repo = "vim_current_word"; - rev = "5cfee50ec35d011478c4ec9805a0e5d9a92f09ea"; - sha256 = "0l543hg5wyrbqykbm8vvhcb8wq9gwkc8y4nq9f7qy5a2qssvvd31"; + rev = "961d54dd53a1da7a9402dc92098a8a8c75d79ac6"; + sha256 = "1qa8pnr8fjxy0d3kf4vhjzwqlj1yszj2r21phmw4f3yl1hl72hc0"; }; meta.homepage = "https://github.com/dominikduda/vim_current_word/"; }; @@ -10618,12 +10738,12 @@ final: prev: vimade = buildVimPluginFrom2Nix { pname = "vimade"; - version = "2021-09-01"; + version = "2021-11-09"; src = fetchFromGitHub { owner = "TaDaa"; repo = "vimade"; - rev = "f01d758cf59842b0a562617184fa16e511f72547"; - sha256 = "02glk6llrzl3xj1rsaiivxmqy05cc954sidc8h21ssmkn9zyj1m3"; + rev = "25ac9e6e3b8f127ab81dc996c69bb7a2c8f26329"; + sha256 = "1nkqmxvamziyavpfqlpn24wqzmrjwzb0s53avkw06h437mpzxzgy"; }; meta.homepage = "https://github.com/TaDaa/vimade/"; }; @@ -10738,12 +10858,12 @@ final: prev: vimspector = buildVimPluginFrom2Nix { pname = "vimspector"; - version = "2021-10-20"; + version = "2021-11-04"; src = fetchFromGitHub { owner = "puremourning"; repo = "vimspector"; - rev = "c1fca028b3f15779a6447c8be65dbdb9acce31ef"; - sha256 = "0bq0i1skyrvbbksz3wv8l2021bxxzqbv8q56fc1mi1j9rj8bc459"; + rev = "15eddb7445c6dc9131058631a03140d03443647a"; + sha256 = "0xv1afx1yah867ksxf5a60v3fk1qg5g3vn72bhybqmcjidxz29p8"; fetchSubmodules = true; }; meta.homepage = "https://github.com/puremourning/vimspector/"; @@ -10751,12 +10871,12 @@ final: prev: vimtex = buildVimPluginFrom2Nix { pname = "vimtex"; - version = "2021-10-25"; + version = "2021-11-12"; src = fetchFromGitHub { owner = "lervag"; repo = "vimtex"; - rev = "3bbd6ea0c7ecb2b95d6d720a9a2f2e8e5802c5ff"; - sha256 = "1rr65xh3pb8zgrfdqh1794qk1lj4nq5772v9cj4x3g318lfll55y"; + rev = "8dad88059f7d712c1f6ff83c6aaa2ef9645a3787"; + sha256 = "0z9smsl20fag4h7iv7jsbh8sshkc97d53r2whl4hyllq04w1jjr7"; }; meta.homepage = "https://github.com/lervag/vimtex/"; }; @@ -10811,12 +10931,12 @@ final: prev: vista-vim = buildVimPluginFrom2Nix { pname = "vista.vim"; - version = "2021-09-20"; + version = "2021-10-26"; src = fetchFromGitHub { owner = "liuchengxu"; repo = "vista.vim"; - rev = "f49ca3dbf334ac33d2629c510524285335031706"; - sha256 = "1pb6njvshml5vwk4wf1w62dgf2ph2farccka2ly2wwiij8ajk6qk"; + rev = "587b6b2de244491c3fbe118ebe6739a90f3c91b2"; + sha256 = "14qxc1f8nx5ahc8809ywgrzcq08v0qkyw6hnrd9ps7mjxqgrsppf"; }; meta.homepage = "https://github.com/liuchengxu/vista.vim/"; }; @@ -10871,12 +10991,12 @@ final: prev: wilder-nvim = buildVimPluginFrom2Nix { pname = "wilder.nvim"; - version = "2021-10-20"; + version = "2021-10-31"; src = fetchFromGitHub { owner = "gelguy"; repo = "wilder.nvim"; - rev = "e08642c862bd73828f50c4f701286cae3c81fe4f"; - sha256 = "0v8jfldjvg7rybs2jgyzrv2mfbda5rgd3x2g4zz8kli6p1513zfp"; + rev = "f7071a649e8eff744b36b055f02bbb952efc4cbb"; + sha256 = "0f3r9l2brk75qs9m8rn6sxlbmg80n51cmh7j3ss66k7al52xpphc"; }; meta.homepage = "https://github.com/gelguy/wilder.nvim/"; }; @@ -10979,12 +11099,12 @@ final: prev: yats-vim = buildVimPluginFrom2Nix { pname = "yats.vim"; - version = "2021-09-05"; + version = "2021-11-02"; src = fetchFromGitHub { owner = "HerringtonDarkholme"; repo = "yats.vim"; - rev = "3188778d38c736f11161cf6fafc33572cb055816"; - sha256 = "04hy09rzn8s56wxacs5x4j74v9xdixkbskm57bsrxys96n2n1kyb"; + rev = "7cf70a6c9ef0ce6657aede257e9c42a03b8f86a9"; + sha256 = "01insbxp68vxhcmqcajy7b6hzj6va4l8f5rqyflphh9pnxrc8pyp"; fetchSubmodules = true; }; meta.homepage = "https://github.com/HerringtonDarkholme/yats.vim/"; @@ -10992,12 +11112,12 @@ final: prev: YouCompleteMe = buildVimPluginFrom2Nix { pname = "YouCompleteMe"; - version = "2021-10-20"; + version = "2021-11-05"; src = fetchFromGitHub { owner = "ycm-core"; repo = "YouCompleteMe"; - rev = "f35a30d4e22783050944c89b666e481d016cd4e1"; - sha256 = "1daj2p2gcpyasdik6chib7crz5spi410fy8vdd84xaak8g9s2b9b"; + rev = "166f499cb1e7c0f445d0ffd8d280329f3942b93b"; + sha256 = "10p7nfjv76q5lf367a56dn4k2f70xdz28r3w0c28laym49jfm5wd"; fetchSubmodules = true; }; meta.homepage = "https://github.com/ycm-core/YouCompleteMe/"; diff --git a/pkgs/misc/vim-plugins/overrides.nix b/pkgs/misc/vim-plugins/overrides.nix index a1b4b81cdd3b..d9a0adcdbb18 100644 --- a/pkgs/misc/vim-plugins/overrides.nix +++ b/pkgs/misc/vim-plugins/overrides.nix @@ -178,6 +178,10 @@ self: super: { ''; }); + crates-nvim = super.crates-nvim.overrideAttrs (old: { + dependencies = with self; [ plenary-nvim ]; + }); + ctrlp-cmatcher = super.ctrlp-cmatcher.overrideAttrs (old: { buildInputs = [ python ]; buildPhase = '' @@ -772,6 +776,10 @@ self: super: { ]; }); + vim-fzf-coauthorship = super.vim-fzf-coauthorship.overrideAttrs (old: { + dependencies = with self; [ fzf-vim ]; + }); + # change the go_bin_path to point to a path in the nix store. See the code in # fatih/vim-go here # https://github.com/fatih/vim-go/blob/155836d47052ea9c9bac81ba3e937f6f22c8e384/autoload/go/path.vim#L154-L159 diff --git a/pkgs/misc/vim-plugins/update-shell.nix b/pkgs/misc/vim-plugins/update-shell.nix index b26620677039..e1b727c49e04 100644 --- a/pkgs/misc/vim-plugins/update-shell.nix +++ b/pkgs/misc/vim-plugins/update-shell.nix @@ -1,8 +1,10 @@ -{ nixpkgs ? import ../../.. { } }: -with nixpkgs; +{ pkgs ? import ../../.. { } }: + +with pkgs; let - pyEnv = python3.withPackages(ps: [ ps.GitPython ]); + pyEnv = python3.withPackages (ps: [ ps.GitPython ]); in + mkShell { packages = [ bash @@ -11,4 +13,3 @@ mkShell { nix-prefetch-scripts ]; } - diff --git a/pkgs/misc/vim-plugins/vim-plugin-names b/pkgs/misc/vim-plugins/vim-plugin-names index a8893994a39e..938f02e1640b 100644 --- a/pkgs/misc/vim-plugins/vim-plugin-names +++ b/pkgs/misc/vim-plugins/vim-plugin-names @@ -36,6 +36,7 @@ artur-shaik/vim-javacomplete2 autozimu/LanguageClient-neovim axelf4/vim-strip-trailing-whitespace ayu-theme/ayu-vim +b0o/SchemaStore.nvim@main b3nj5m1n/kommentary@main bakpakin/fennel.vim bazelbuild/vim-bazel @@ -46,6 +47,7 @@ bhurlow/vim-parinfer bitc/vim-hdevtools bkad/camelcasemotion bling/vim-bufferline +blueballs-theme/blueballs-neovim blueyed/vim-diminactive bogado/file-line bohlender/vim-smt2 @@ -227,7 +229,9 @@ honza/vim-snippets hotwatermorning/auto-git-diff hrsh7th/cmp-buffer@main hrsh7th/cmp-calc@main +hrsh7th/cmp-cmdline@main hrsh7th/cmp-emoji@main +hrsh7th/cmp-nvim-lsp-document-symbol@main hrsh7th/cmp-nvim-lsp@main hrsh7th/cmp-nvim-lua@main hrsh7th/cmp-omni@main @@ -380,7 +384,7 @@ ledger/vim-ledger lepture/vim-jinja lervag/vimtex lewis6991/gitsigns.nvim@main -lf-lang/lingua-franca.vim +lf-lang/lingua-franca.vim@main lfe-support/vim-lfe lfilho/cosco.vim lifepillar/vim-gruvbox8 @@ -403,6 +407,7 @@ lukas-reineke/indent-blankline.nvim lukaszkorecki/workflowish lumiliet/vim-twig luochen1990/rainbow +luukvbaal/stabilize.nvim lyokha/vim-xkbswitch machakann/vim-highlightedyank machakann/vim-sandwich @@ -437,6 +442,7 @@ mattn/webapi-vim matze/vim-move max397574/better-escape.nvim maximbaz/lightline-ale +maxjacobson/vim-fzf-coauthorship MaxMEllon/vim-jsx-pretty mbbill/undotree mboughaba/i3config.vim @@ -473,6 +479,7 @@ motus/pig.vim mpickering/hlint-refactor-vim ms-jpq/chadtree@chad mtikekar/vim-bsv +MunifTanjim/nui.nvim@main mzlogin/vim-markdown-toc mzlogin/vim-smali nacro90/numb.nvim @@ -645,6 +652,7 @@ romainl/vim-qlist roman/golden-ratio romgrk/barbar.nvim romgrk/nvim-treesitter-context +ron-rs/ron.vim ron89/thesaurus_query.vim roxma/nvim-cm-racer roxma/nvim-completion-manager @@ -741,6 +749,7 @@ tex/vimpreviewpandoc Th3Whit3Wolf/one-nvim@main theHamsta/nvim-dap-virtual-text ThePrimeagen/git-worktree.nvim +ThePrimeagen/harpoon theprimeagen/refactoring.nvim ThePrimeagen/vim-apm thinca/vim-ft-diff_fold @@ -880,6 +889,7 @@ vmchale/ats-vim vmchale/dhall-vim vn-ki/coc-clap voldikss/vim-floaterm +vuki656/package-info.nvim VundleVim/Vundle.vim w0ng/vim-hybrid wakatime/vim-wakatime diff --git a/pkgs/misc/vim-plugins/vim-utils.nix b/pkgs/misc/vim-plugins/vim-utils.nix index 01c32b2a3996..aa97f6b60985 100644 --- a/pkgs/misc/vim-plugins/vim-utils.nix +++ b/pkgs/misc/vim-plugins/vim-utils.nix @@ -198,8 +198,8 @@ let ''; linkVimlPlugin = plugin: packageName: dir: '' - mkdir -p $out/pack/${packageName}/${dir}/${lib.getName plugin} - ln -sf ${plugin}/${rtpPath}/* $out/pack/${packageName}/${dir}/${lib.getName plugin} + mkdir -p $out/pack/${packageName}/${dir} + ln -sf ${plugin}/${rtpPath} $out/pack/${packageName}/${dir}/${lib.getName plugin} ''; link = pluginPath: if hasLuaModule pluginPath diff --git a/pkgs/misc/vscode-extensions/cpptools/default.nix b/pkgs/misc/vscode-extensions/cpptools/default.nix index 188da860530a..077c3807ecaa 100644 --- a/pkgs/misc/vscode-extensions/cpptools/default.nix +++ b/pkgs/misc/vscode-extensions/cpptools/default.nix @@ -1,12 +1,9 @@ { lib, vscode-utils -, fetchurl, unzip -, mono, writeScript, runtimeShell +, fetchurl, mono, writeScript, runtimeShell , jq, clang-tools , gdbUseFixed ? true, gdb # The gdb default setting will be fixed to specified. Use version from `PATH` otherwise. }: -assert gdbUseFixed -> null != gdb; - /* Note that this version of the extension still has some nix specific issues which could not be fixed merely by patching (inside a C# dll). @@ -50,13 +47,13 @@ vscode-utils.buildVscodeMarketplaceExtension rec { mktplcRef = { name = "cpptools"; publisher = "ms-vscode"; - version = "1.0.1"; + version = "1.7.1"; }; vsix = fetchurl { name = "${mktplcRef.publisher}-${mktplcRef.name}.zip"; url = "https://github.com/microsoft/vscode-cpptools/releases/download/${mktplcRef.version}/cpptools-linux.vsix"; - sha256 = "1lb5pza2ny1ydan19596amabs1np10nq08yqsfbvvfw7zbg4gnyc"; + sha256 = "sha256-LqndG/vv8LgVPEX6dGkikDB6M6ISneo2UJ78izXVFbk="; }; buildInputs = [ @@ -77,8 +74,8 @@ vscode-utils.buildVscodeMarketplaceExtension rec { touch "./install.lock" # Mono runtimes from nix package (used by generated `OpenDebugAD7`). - mv ./debugAdapters/OpenDebugAD7 ./debugAdapters/OpenDebugAD7_orig - cp -p "${openDebugAD7Script}" "./debugAdapters/OpenDebugAD7" + mv ./debugAdapters/bin/OpenDebugAD7 ./debugAdapters/bin/OpenDebugAD7_orig + cp -p "${openDebugAD7Script}" "./debugAdapters/bin/OpenDebugAD7" # Clang-format from nix package. mv ./LLVM/ ./LLVM_orig diff --git a/pkgs/misc/vscode-extensions/default.nix b/pkgs/misc/vscode-extensions/default.nix index 714d53cc290f..f1107d866cc2 100644 --- a/pkgs/misc/vscode-extensions/default.nix +++ b/pkgs/misc/vscode-extensions/default.nix @@ -1,6 +1,6 @@ { config , lib -, buildEnv +, fetchurl , callPackage , vscode-utils , asciidoctor @@ -971,19 +971,19 @@ let }; jnoortheen.nix-ide = buildVscodeMarketplaceExtension { + mktplcRef = { + name = "nix-ide"; + publisher = "jnoortheen"; + version = "0.1.18"; + sha256 = "sha256-dmmx/u+hRQfY/MCIaSdcVtbYnf5cLCDUwr75heQxcuw="; + }; meta = with lib; { changelog = "https://marketplace.visualstudio.com/items/jnoortheen.nix-ide/changelog"; description = "Nix language support with formatting and error report"; downloadPage = "https://marketplace.visualstudio.com/items?itemName=jnoortheen.nix-ide"; homepage = "https://github.com/jnoortheen/vscode-nix-ide"; license = licenses.mit; - maintainers = with maintainers; [ ]; - }; - mktplcRef = { - name = "nix-ide"; - publisher = "jnoortheen"; - version = "0.1.16"; - sha256 = "04ky1mzyjjr1mrwv3sxz4mgjcq5ylh6n01lvhb19h3fmwafkdxbp"; + maintainers = with maintainers; [ SuperSandro2000 ]; }; }; @@ -1435,6 +1435,18 @@ let }; }; + stkb.rewrap = buildVscodeMarketplaceExtension { + mktplcRef = { + publisher = "stkb"; + name = "rewrap"; + version = "1.14.0"; + sha256 = "qRwKX36a1aLzE1tqaOkH7JfE//pvKdPZ07zasPF3Dl4="; + }; + meta = with lib; { + license = licenses.asl20; + }; + }; + streetsidesoftware.code-spell-checker = buildVscodeMarketplaceExtension { mktplcRef = { name = "code-spell-checker"; @@ -1597,6 +1609,34 @@ let vadimcn.vscode-lldb = callPackage ./vscode-lldb { }; + valentjn.vscode-ltex = vscode-utils.buildVscodeMarketplaceExtension rec { + mktplcRef = { + name = "vscode-ltex"; + publisher = "valentjn"; + version = "13.0.0"; + }; + + vsix = fetchurl { + name = "${mktplcRef.publisher}-${mktplcRef.name}.zip"; + url = "https://github.com/valentjn/vscode-ltex/releases/download/${mktplcRef.version}/vscode-ltex-${mktplcRef.version}-offline-linux-x64.vsix"; + sha256 = "6db4846dee4e394f7bcfb7e29520d45d6bc1534482ba73cf40cd5edf3f6ec266"; + }; + + nativeBuildInputs = [ jq moreutils ]; + + buildInputs = [ jdk ]; + + postInstall = '' + cd "$out/$installPrefix" + jq '.contributes.configuration.properties."ltex.java.path".default = "${jdk}"' package.json | sponge package.json + ''; + + meta = with lib; { + license = licenses.mpl20; + maintainers = [ maintainers._0xbe7a ]; + }; + }; + viktorqvarfordt.vscode-pitch-black-theme = buildVscodeMarketplaceExtension { mktplcRef = { name = "vscode-pitch-black-theme"; diff --git a/pkgs/misc/vscode-extensions/ms-dotnettools-csharp/default.nix b/pkgs/misc/vscode-extensions/ms-dotnettools-csharp/default.nix index 8683da040d73..393ea0f44502 100644 --- a/pkgs/misc/vscode-extensions/ms-dotnettools-csharp/default.nix +++ b/pkgs/misc/vscode-extensions/ms-dotnettools-csharp/default.nix @@ -13,7 +13,7 @@ let # Get as close as possible as the `package.json` required version. # This is what drives omnisharp. - rtDepsSrcsFromJson = builtins.fromJSON (builtins.readFile ./rt-deps-bin-srcs.json); + rtDepsSrcsFromJson = lib.importJSON ./rt-deps-bin-srcs.json; rtDepsBinSrcs = builtins.mapAttrs (k: v: let diff --git a/pkgs/misc/vscode-extensions/python/default.nix b/pkgs/misc/vscode-extensions/python/default.nix index 4a03c46dce4a..beaa8d557a75 100644 --- a/pkgs/misc/vscode-extensions/python/default.nix +++ b/pkgs/misc/vscode-extensions/python/default.nix @@ -59,13 +59,13 @@ in vscode-utils.buildVscodeMarketplaceExtension rec { mktplcRef = { name = "python"; publisher = "ms-python"; - version = "2021.5.829140558"; + version = "2021.11.1422169775"; }; vsix = fetchurl { name = "${mktplcRef.publisher}-${mktplcRef.name}.zip"; url = "https://github.com/microsoft/vscode-python/releases/download/${mktplcRef.version}/ms-python-release.vsix"; - sha256 = "0y2HN4WGYUUXBfqp8Xb4oaA0hbLZmE3kDUXMBAOjvPQ="; + sha256 = "sha256-Y8Wbpuieca/edIWqgq+lGSUMABOGvO/GuujGlEGmoKs="; }; buildInputs = [ diff --git a/pkgs/misc/vscode-extensions/remote-ssh/default.nix b/pkgs/misc/vscode-extensions/remote-ssh/default.nix index ab59527d82bc..3bfc94bb6ea4 100644 --- a/pkgs/misc/vscode-extensions/remote-ssh/default.nix +++ b/pkgs/misc/vscode-extensions/remote-ssh/default.nix @@ -1,6 +1,7 @@ { lib , vscode-utils -, useLocalExtensions ? false}: +, useLocalExtensions ? false +}: # Note that useLocalExtensions requires that vscode-server is not running # on host. If it is, you'll need to remove $HOME/.vscode-server, # and redo the install by running "Connect to host" on client @@ -32,24 +33,22 @@ let ''} ''; in - buildVscodeMarketplaceExtension { - mktplcRef = { - name = "remote-ssh"; - publisher = "ms-vscode-remote"; - version = "0.65.7"; - sha256 = "ae86c4be79fc5af747bb1f1aa5841221af80ee7476cc2f1c9ac277fa2fa1d683"; - }; +buildVscodeMarketplaceExtension { + mktplcRef = { + name = "remote-ssh"; + publisher = "ms-vscode-remote"; + version = "0.66.1"; + sha256 = "sha256-+v4UnGRG5xOc8k0IzvHUBHa128fhgd3jcmEuciiMQmI="; + }; - postPatch = '' - substituteInPlace "out/extension.js" \ - --replace "# install extensions" '${patch}' - ''; + postPatch = '' + substituteInPlace "out/extension.js" \ + --replace "# install extensions" '${patch}' + ''; - meta = with lib; { - description ="Use any remote machine with a SSH server as your development environment."; - license = licenses.unfree; - maintainers = with maintainers; [ - tbenst - ]; - }; - } + meta = with lib; { + description = "Use any remote machine with a SSH server as your development environment."; + license = licenses.unfree; + maintainers = with maintainers; [ SuperSandro2000 tbenst ]; + }; +} diff --git a/pkgs/misc/vscode-extensions/wakatime/default.nix b/pkgs/misc/vscode-extensions/wakatime/default.nix index 7290c04342ea..9832b16f7473 100644 --- a/pkgs/misc/vscode-extensions/wakatime/default.nix +++ b/pkgs/misc/vscode-extensions/wakatime/default.nix @@ -1,5 +1,5 @@ { lib -, wakatime, vscode-utils }: +, vscode-utils }: let inherit (vscode-utils) buildVscodeMarketplaceExtension; @@ -8,23 +8,15 @@ in mktplcRef = { name = "vscode-wakatime"; publisher = "WakaTime"; - version = "4.0.9"; - sha256 = "0sm2fr9zbk1759r52dpnz9r7xbvxladlpinlf2i0hyaa06bhp3b1"; + version = "17.1.0"; + sha256 = "177q8angrn702pxrrpk1fzggzlnnaymq32v55qpjgjb74rhg4dzw"; }; - postPatch = '' - mkdir wakatime-cli - ln -s ${wakatime}/bin/wakatime ./wakatime-cli/wakatime-cli - ''; - meta = with lib; { description = '' Visual Studio Code plugin for automatic time tracking and metrics generated from your programming activity ''; license = licenses.bsd3; - maintainers = with maintainers; [ - eadwu - ]; }; } diff --git a/pkgs/misc/wiki-tui/default.nix b/pkgs/misc/wiki-tui/default.nix index b07dd8c731b1..13bc877ea8fc 100644 --- a/pkgs/misc/wiki-tui/default.nix +++ b/pkgs/misc/wiki-tui/default.nix @@ -1,19 +1,25 @@ -{ lib, rustPlatform, fetchCrate, ncurses, openssl, pkg-config }: +{ lib, rustPlatform, fetchFromGitHub, ncurses, openssl, pkg-config, stdenv, nix-update-script, Security }: rustPlatform.buildRustPackage rec { pname = "wiki-tui"; - version = "0.3.4"; + version = "0.4.2"; - src = fetchCrate { - inherit pname version; - sha256 = "sha256-H+C1AbZ2zUhw6TNlSPaNaNuY5iNf39JW4q2g6uolevM="; + src = fetchFromGitHub { + owner = "Builditluc"; + repo = pname; + rev = "v${version}"; + sha256 = "sha256-TWpCmHG07dv0/hXGpo71Ie0uDRqs6yywHzcv0Hpi8Sc="; }; - buildInputs = [ ncurses openssl ]; + buildInputs = [ ncurses openssl ] ++ lib.optional stdenv.isDarwin Security; nativeBuildInputs = [ pkg-config ]; - cargoSha256 = "sha256-PIt592nGtNEREQMukqRl/6KSJ/P32fWucHEMyOOc7BA="; + cargoSha256 = "sha256-tJhbIsmh4zw1Dhvc2jE0N1cTE4//DOe3rDzDVNiTigA="; + + passthru.updateScript = nix-update-script { + attrPath = pname; + }; meta = with lib; { description = "A simple and easy to use Wikipedia Text User Interface"; diff --git a/pkgs/os-specific/bsd/netbsd/default.nix b/pkgs/os-specific/bsd/netbsd/default.nix index 8f24d28409f9..5fd9bbc51a0f 100644 --- a/pkgs/os-specific/bsd/netbsd/default.nix +++ b/pkgs/os-specific/bsd/netbsd/default.nix @@ -508,7 +508,7 @@ in lib.makeScopeWithSplicing nativeBuildInputs = with buildPackages.netbsd; [ bsdSetupHook netbsdSetupHook makeMinimal - install mandoc groff nbperf + install mandoc groff nbperf rsync ]; makeFlags = defaultMakeFlags ++ [ "TOOLDIR=$(out)" ]; extraPaths = with self; [ @@ -674,7 +674,7 @@ in lib.makeScopeWithSplicing nativeBuildInputs = with buildPackages.netbsd; [ bsdSetupHook netbsdSetupHook makeMinimal - byacc install tsort lorder mandoc statHook + byacc install tsort lorder mandoc statHook rsync ]; buildInputs = with self; [ headers ]; SHLIBINSTALLDIR = "$(out)/lib"; @@ -707,7 +707,7 @@ in lib.makeScopeWithSplicing sha256 = "0pq05k3dj0dfsczv07frnnji92mazmy2qqngqbx2zgqc1x251414"; nativeBuildInputs = with buildPackages.netbsd; [ bsdSetupHook netbsdSetupHook - makeMinimal install tsort lorder mandoc statHook nbperf tic + makeMinimal install tsort lorder mandoc statHook nbperf tic rsync ]; buildInputs = with self; compatIfNeeded; SHLIBINSTALLDIR = "$(out)/lib"; diff --git a/pkgs/os-specific/darwin/DarwinTools/default.nix b/pkgs/os-specific/darwin/DarwinTools/default.nix index 588769c7bfc6..f648435eed27 100644 --- a/pkgs/os-specific/darwin/DarwinTools/default.nix +++ b/pkgs/os-specific/darwin/DarwinTools/default.nix @@ -1,10 +1,11 @@ { lib, stdenv, fetchurl }: stdenv.mkDerivation rec { - name = "DarwinTools-1"; + pname = "DarwinTools"; + version = "1"; src = fetchurl { - url = "https://opensource.apple.com/tarballs/DarwinTools/${name}.tar.gz"; + url = "https://opensource.apple.com/tarballs/DarwinTools/DarwinTools-${version}.tar.gz"; sha256 = "0hh4jl590jv3v830p77r3jcrnpndy7p2b8ajai3ldpnx2913jfhp"; }; diff --git a/pkgs/os-specific/darwin/insert_dylib/default.nix b/pkgs/os-specific/darwin/insert_dylib/default.nix index 07e8886e3e63..7ab9692f0d42 100644 --- a/pkgs/os-specific/darwin/insert_dylib/default.nix +++ b/pkgs/os-specific/darwin/insert_dylib/default.nix @@ -1,18 +1,22 @@ { lib, stdenv, fetchFromGitHub, xcbuildHook }: -stdenv.mkDerivation - { name = "insert_dylib-2016.08.28"; - src = fetchFromGitHub - { owner = "Tyilo"; - repo = "insert_dylib"; - rev = "c8beef66a08688c2feeee2c9b6eaf1061c2e67a9"; - sha256 = "0az38y06pvvy9jf2wnzdwp9mp98lj6nr0ldv0cs1df5p9x2qvbya"; - }; - nativeBuildInputs = [ xcbuildHook ]; - installPhase = - '' - mkdir -p $out/bin - install -m755 Products/Release/insert_dylib $out/bin - ''; - meta.platforms = lib.platforms.darwin; - } +stdenv.mkDerivation { + pname = "insert_dylib"; + version = "unstable-2016-08-28"; + + src = fetchFromGitHub { + owner = "Tyilo"; + repo = "insert_dylib"; + rev = "c8beef66a08688c2feeee2c9b6eaf1061c2e67a9"; + sha256 = "0az38y06pvvy9jf2wnzdwp9mp98lj6nr0ldv0cs1df5p9x2qvbya"; + }; + + nativeBuildInputs = [ xcbuildHook ]; + + installPhase = '' + mkdir -p $out/bin + install -m755 Products/Release/insert_dylib $out/bin + ''; + + meta.platforms = lib.platforms.darwin; +} diff --git a/pkgs/os-specific/darwin/maloader/default.nix b/pkgs/os-specific/darwin/maloader/default.nix index 9142484e043c..bcd9fe6488d2 100644 --- a/pkgs/os-specific/darwin/maloader/default.nix +++ b/pkgs/os-specific/darwin/maloader/default.nix @@ -1,7 +1,8 @@ { lib, stdenv, fetchgit, opencflite, clang, libcxx }: stdenv.mkDerivation { - name = "maloader-0git"; + pname = "maloader"; + version = "unstable-2014-02-25"; src = fetchgit { url = "git://github.com/shinh/maloader.git"; diff --git a/pkgs/os-specific/darwin/rewrite-tbd/default.nix b/pkgs/os-specific/darwin/rewrite-tbd/default.nix index f41b81b3bc90..e5ef118e514c 100644 --- a/pkgs/os-specific/darwin/rewrite-tbd/default.nix +++ b/pkgs/os-specific/darwin/rewrite-tbd/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchFromGitHub, cmake, pkg-config, libyaml }: +{ stdenv, lib, fetchFromGitHub, cmake, pkg-config, libyaml }: stdenv.mkDerivation { pname = "rewrite-tbd"; @@ -13,4 +13,11 @@ stdenv.mkDerivation { nativeBuildInputs = [ cmake pkg-config ]; buildInputs = [ libyaml ]; + + meta = with lib; { + homepage = "https://github.com/thefloweringash/rewrite-tbd/"; + description = "Rewrite filepath in .tbd to Nix applicable format"; + platforms = platforms.darwin; + license = licenses.mit; + }; } diff --git a/pkgs/os-specific/linux/bridge-utils/add-ip6-header.patch b/pkgs/os-specific/linux/bridge-utils/add-ip6-header.patch deleted file mode 100644 index c9149bfec386..000000000000 --- a/pkgs/os-specific/linux/bridge-utils/add-ip6-header.patch +++ /dev/null @@ -1,11 +0,0 @@ -diff --git a/libbridge/libbridge.h b/libbridge/libbridge.h -index 39964f2..dd14bae 100644 ---- a/libbridge/libbridge.h -+++ b/libbridge/libbridge.h -@@ -20,6 +20,7 @@ - #define _LIBBRIDGE_H - - #include <sys/socket.h> -+#include <netinet/in.h> - #include <linux/if.h> - #include <linux/if_bridge.h> diff --git a/pkgs/os-specific/linux/bridge-utils/autoconf-ar.patch b/pkgs/os-specific/linux/bridge-utils/autoconf-ar.patch index efa41075644d..21b089179ce1 100644 --- a/pkgs/os-specific/linux/bridge-utils/autoconf-ar.patch +++ b/pkgs/os-specific/linux/bridge-utils/autoconf-ar.patch @@ -1,7 +1,5 @@ -diff --git a/configure.in b/configure.in -index 5e3f89b..19be6d9 100644 ---- a/configure.in -+++ b/configure.in +--- a/configure.ac ++++ b/configure.ac @@ -9,6 +9,7 @@ dnl Checks for programs. AC_PROG_CC AC_PROG_INSTALL @@ -10,8 +8,6 @@ index 5e3f89b..19be6d9 100644 dnl Checks for header files. AC_HEADER_STDC -diff --git a/libbridge/Makefile.in b/libbridge/Makefile.in -index 20512c4..83c802b 100644 --- a/libbridge/Makefile.in +++ b/libbridge/Makefile.in @@ -1,7 +1,7 @@ diff --git a/pkgs/os-specific/linux/bridge-utils/default.nix b/pkgs/os-specific/linux/bridge-utils/default.nix index 92e7606c9bdb..cbbf77c67c8a 100644 --- a/pkgs/os-specific/linux/bridge-utils/default.nix +++ b/pkgs/os-specific/linux/bridge-utils/default.nix @@ -2,29 +2,19 @@ stdenv.mkDerivation rec { pname = "bridge-utils"; - version = "1.5"; + version = "1.7.1"; src = fetchurl { - url = "mirror://sourceforge/bridge/bridge-utils-${version}.tar.gz"; - sha256 = "42f9e5fb8f6c52e63a98a43b81bd281c227c529f194913e1c51ec48a393b6688"; + url = "https://kernel.org/pub/linux/utils/net/bridge-utils/bridge-utils-${version}.tar.xz"; + sha256 = "sha256-ph2L5PGhQFxgyO841UTwwYwFszubB+W0sxAzU2Fl5g4="; }; - patches = [ - ./autoconf-ar.patch - ./add-ip6-header.patch # Remove patch once the kernel headers are updated - ]; + patches = [ ./autoconf-ar.patch ]; nativeBuildInputs = [ autoreconfHook ]; - postInstall = '' - # The bridge utils build does not fail even if the brctl binary - # is not build. This test ensures that we fail if we don't produce a brctl - # binary. - test -f $out/sbin/brctl - ''; - meta = { - description = "https://sourceforge.net/projects/bridge/"; + description = "An userspace tool to configure linux bridges (deprecated in favour or iproute2)."; homepage = "https://wiki.linuxfoundation.org/networking/bridge"; license = lib.licenses.gpl2Plus; platforms = lib.platforms.linux; diff --git a/pkgs/os-specific/linux/cpuid/default.nix b/pkgs/os-specific/linux/cpuid/default.nix index ea9ae06130ec..a434501d5126 100644 --- a/pkgs/os-specific/linux/cpuid/default.nix +++ b/pkgs/os-specific/linux/cpuid/default.nix @@ -1,20 +1,27 @@ -{ lib, stdenv, fetchurl, perl }: +{ lib +, stdenv +, fetchurl +, perl +}: stdenv.mkDerivation rec { pname = "cpuid"; - version = "20201006"; + version = "20211031"; src = fetchurl { - name = "${pname}-${version}.src.tar.gz"; url = "http://etallen.com/cpuid/${pname}-${version}.src.tar.gz"; - sha256 = "19jnkh57f979b78ak5mpxmdvnkgc33r55cw9shgd2hc380b3zi8k"; + sha256 = "13sxb2ar4gypiv0l87lr7hf3qjccwgsg1r92adv9jvrfxcv36pbn"; }; # For pod2man during the build process. - nativeBuildInputs = [ perl ]; + nativeBuildInputs = [ + perl + ]; # As runtime dependency for cpuinfo2cpuid. - buildInputs = [ perl ]; + buildInputs = [ + perl + ]; # The Makefile hardcodes $(BUILDROOT)/usr as installation # destination. Just nuke all mentions of /usr to get the right @@ -32,7 +39,7 @@ stdenv.mkDerivation rec { fi ''; - meta = { + meta = with lib; { description = "Linux tool to dump x86 CPUID information about the CPU"; longDescription = '' cpuid dumps detailed information about the CPU(s) gathered from the CPUID @@ -40,11 +47,10 @@ stdenv.mkDerivation rec { Intel, AMD, VIA, Hygon, and Zhaoxin CPUs, as well as older Transmeta, Cyrix, UMC, NexGen, Rise, and SiS CPUs. ''; - platforms = [ "i686-linux" "x86_64-linux" ]; - license = lib.licenses.gpl2; + license = licenses.gpl2Plus; homepage = "http://etallen.com/cpuid.html"; - maintainers = with lib.maintainers; [ blitz ]; + maintainers = with maintainers; [ blitz ]; }; } diff --git a/pkgs/os-specific/linux/ddcci/default.nix b/pkgs/os-specific/linux/ddcci/default.nix index 5ee5eafb0207..27de98611006 100644 --- a/pkgs/os-specific/linux/ddcci/default.nix +++ b/pkgs/os-specific/linux/ddcci/default.nix @@ -38,6 +38,6 @@ stdenv.mkDerivation rec { license = licenses.gpl2Plus; maintainers = with maintainers; [ ]; platforms = platforms.linux; - broken = kernel.kernelOlder "5.1"; + broken = kernel.kernelOlder "5.1" || kernel.kernelAtLeast "5.15"; }; } diff --git a/pkgs/os-specific/linux/displaylink/default.nix b/pkgs/os-specific/linux/displaylink/default.nix index ca3e38c2e707..6cc22c25602b 100644 --- a/pkgs/os-specific/linux/displaylink/default.nix +++ b/pkgs/os-specific/linux/displaylink/default.nix @@ -20,17 +20,17 @@ let in stdenv.mkDerivation rec { pname = "displaylink"; - version = "5.4.0-55.153"; + version = "5.4.1-55.174"; src = requireFile rec { name = "displaylink.zip"; - sha256 = "1m2l3bnlfwfp94w7khr05npsbysg9mcyi7hi85n78xkd0xdcxml8"; + sha256 = "1biswvjz91gmx7xf9g05h3ra463hf2yv9mr2nkxclyrd283iiiqc"; message = '' In order to install the DisplayLink drivers, you must first comply with DisplayLink's EULA and download the binaries and sources from here: - https://www.synaptics.com/node/3751 + https://www.synaptics.com/products/displaylink-graphics/downloads/ubuntu-5.4.1 Once you have downloaded the file, please use the following commands and re-run the installation: diff --git a/pkgs/os-specific/linux/ena/default.nix b/pkgs/os-specific/linux/ena/default.nix index 1ff0b9a154a4..1257217a5206 100644 --- a/pkgs/os-specific/linux/ena/default.nix +++ b/pkgs/os-specific/linux/ena/default.nix @@ -41,6 +41,6 @@ stdenv.mkDerivation rec { license = licenses.gpl2Only; maintainers = [ maintainers.eelco ]; platforms = platforms.linux; - broken = kernel.kernelOlder "4.5"; + broken = kernel.kernelOlder "4.5" || kernel.kernelAtLeast "5.15"; }; } diff --git a/pkgs/os-specific/linux/eudev/default.nix b/pkgs/os-specific/linux/eudev/default.nix index 1fdd0647557d..b642314737c9 100644 --- a/pkgs/os-specific/linux/eudev/default.nix +++ b/pkgs/os-specific/linux/eudev/default.nix @@ -9,9 +9,9 @@ let sha256 = "sha256-h7sCjUcP0bhRaTSbRMVdW3M3M9wtUN3xGW4CZyXq0DQ="; }; - nativeBuildInputs = [ pkg-config ]; + nativeBuildInputs = [ pkg-config gperf ]; buildInputs = [ - glib gperf util-linux kmod + glib util-linux kmod ]; in stdenv.mkDerivation { diff --git a/pkgs/os-specific/linux/evdi/default.nix b/pkgs/os-specific/linux/evdi/default.nix index c1b624386c39..e0d1c46d64ad 100644 --- a/pkgs/os-specific/linux/evdi/default.nix +++ b/pkgs/os-specific/linux/evdi/default.nix @@ -33,6 +33,6 @@ stdenv.mkDerivation rec { platforms = platforms.linux; license = with licenses; [ lgpl21Only gpl2Only ]; homepage = "https://www.displaylink.com/"; - broken = kernel.kernelOlder "4.19" || stdenv.isAarch64; + broken = kernel.kernelOlder "4.19" || kernel.kernelAtLeast "5.15" || stdenv.isAarch64; }; } diff --git a/pkgs/os-specific/linux/fbterm/default.nix b/pkgs/os-specific/linux/fbterm/default.nix index 72e886b91f55..4fdbb06c5217 100644 --- a/pkgs/os-specific/linux/fbterm/default.nix +++ b/pkgs/os-specific/linux/fbterm/default.nix @@ -1,19 +1,18 @@ -{stdenv, lib, fetchurl, gpm, freetype, fontconfig, pkg-config, ncurses, libx86}: +{ stdenv, lib, fetchurl, gpm, freetype, fontconfig, pkg-config, ncurses, libx86 }: let s = # Generated upstream information - { - baseName="fbterm"; - version="1.7.0"; - name="fbterm-1.7.0"; - hash="0pciv5by989vzvjxsv1jsv4bdp4m8j0nfbl29jm5fwi12w4603vj"; - url = "https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/fbterm/fbterm-1.7.0.tar.gz"; - sha256="0pciv5by989vzvjxsv1jsv4bdp4m8j0nfbl29jm5fwi12w4603vj"; - }; - buildInputs = [gpm freetype fontconfig ncurses] + { + version = "1.7.0"; + pname = "fbterm"; + hash = "0pciv5by989vzvjxsv1jsv4bdp4m8j0nfbl29jm5fwi12w4603vj"; + url = "https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/fbterm/fbterm-1.7.0.tar.gz"; + sha256 = "0pciv5by989vzvjxsv1jsv4bdp4m8j0nfbl29jm5fwi12w4603vj"; + }; + buildInputs = [ gpm freetype fontconfig ncurses ] ++ lib.optional (stdenv.isi686 || stdenv.isx86_64) libx86; in stdenv.mkDerivation { - inherit (s) name version; + inherit (s) pname version; src = fetchurl { inherit (s) url sha256; }; diff --git a/pkgs/os-specific/linux/firmware/fwupd-efi/default.nix b/pkgs/os-specific/linux/firmware/fwupd-efi/default.nix new file mode 100644 index 000000000000..0e74b32b3b6b --- /dev/null +++ b/pkgs/os-specific/linux/firmware/fwupd-efi/default.nix @@ -0,0 +1,56 @@ +{ lib +, stdenv +, fetchurl +, fetchFromGitHub +, substituteAll +, pkg-config +, meson +, ninja +, gnu-efi +, python3 +}: + +stdenv.mkDerivation rec { + pname = "fwupd-efi"; + version = "1.1"; + + src = fetchurl { + url = "https://people.freedesktop.org/~hughsient/releases/${pname}-${version}.tar.xz"; + sha256 = "1w879qxlnsaz5xyp168a08f2p8yrgfpkfycls28jw8qxmz6g20aw"; + }; + + nativeBuildInputs = [ + meson + ninja + pkg-config + python3 + ]; + + buildInputs = [ + gnu-efi + ]; + + postPatch = '' + patchShebangs \ + efi/generate_binary.py \ + efi/generate_sbat.py + ''; + + mesonFlags = [ + "-Defi-includedir=${gnu-efi}/include/efi" + "-Defi-libdir=${gnu-efi}/lib" + "-Defi-ldsdir=${gnu-efi}/lib" + "-Defi_sbat_distro_id=nixos" + "-Defi_sbat_distro_summary=NixOS" + "-Defi_sbat_distro_pkgname=${pname}" + "-Defi_sbat_distro_version=${version}" + "-Defi_sbat_distro_url=https://search.nixos.org/packages?channel=unstable&show=fwupd-efi&from=0&size=50&sort=relevance&query=fwupd-efi" + ]; + + meta = with lib; { + homepage = "https://fwupd.org/"; + maintainers = with maintainers; [ maxeaubrey ]; + license = licenses.lgpl21Plus; + platforms = platforms.linux; + }; +} diff --git a/pkgs/os-specific/linux/firmware/fwupd/add-option-for-installation-sysconfdir.patch b/pkgs/os-specific/linux/firmware/fwupd/add-option-for-installation-sysconfdir.patch index cd42f2f44e20..66194430b251 100644 --- a/pkgs/os-specific/linux/firmware/fwupd/add-option-for-installation-sysconfdir.patch +++ b/pkgs/os-specific/linux/firmware/fwupd/add-option-for-installation-sysconfdir.patch @@ -1,21 +1,21 @@ diff --git a/data/meson.build b/data/meson.build -index 50154569..f8058a8e 100644 +index f10d4ff6..2dc66fb6 100644 --- a/data/meson.build +++ b/data/meson.build -@@ -17,7 +17,7 @@ endif +@@ -21,7 +21,7 @@ endif if build_standalone install_data(['daemon.conf'], - install_dir : join_paths(sysconfdir, 'fwupd') + install_dir : join_paths(sysconfdir_install, 'fwupd') ) - endif - + install_data(['power.quirk'], + install_dir: join_paths(datadir, 'fwupd', 'quirks.d')) diff --git a/data/pki/meson.build b/data/pki/meson.build -index 94bb0b6f..1ea6a9ac 100644 +index dcd9e128..ff137f3a 100644 --- a/data/pki/meson.build +++ b/data/pki/meson.build -@@ -3,24 +3,23 @@ install_data([ +@@ -2,24 +2,23 @@ install_data([ 'GPG-KEY-Linux-Foundation-Firmware', 'GPG-KEY-Linux-Vendor-Firmware-Service', ], @@ -45,19 +45,28 @@ index 94bb0b6f..1ea6a9ac 100644 ) - diff --git a/data/remotes.d/meson.build b/data/remotes.d/meson.build -index 826a3c1d..b78db663 100644 +index 02d8777b..2c89d593 100644 --- a/data/remotes.d/meson.build +++ b/data/remotes.d/meson.build -@@ -3,7 +3,7 @@ if build_daemon and get_option('lvfs') - 'lvfs.conf', +@@ -2,7 +2,7 @@ if build_standalone and get_option('lvfs') != 'false' + install_data([ 'lvfs-testing.conf', ], - install_dir : join_paths(sysconfdir, 'fwupd', 'remotes.d') + install_dir : join_paths(sysconfdir_install, 'fwupd', 'remotes.d') + ) + con3 = configuration_data() + if get_option('lvfs') == 'disabled' +@@ -15,7 +15,7 @@ if build_standalone and get_option('lvfs') != 'false' + output : 'lvfs.conf', + configuration : con3, + install: true, +- install_dir: join_paths(sysconfdir, 'fwupd', 'remotes.d'), ++ install_dir: join_paths(sysconfdir_install, 'fwupd', 'remotes.d'), ) i18n.merge_file( input: 'lvfs.metainfo.xml', -@@ -37,12 +37,12 @@ configure_file( +@@ -49,12 +49,12 @@ configure_file( output : 'vendor.conf', configuration : con2, install: true, @@ -73,10 +82,10 @@ index 826a3c1d..b78db663 100644 + install_dir: join_paths(sysconfdir_install, 'fwupd', 'remotes.d'), ) diff --git a/meson.build b/meson.build -index b075ca89..8d504d3c 100644 +index 7557cd4a..4c98de6d 100644 --- a/meson.build +++ b/meson.build -@@ -194,6 +194,12 @@ endif +@@ -190,6 +190,12 @@ endif mandir = join_paths(prefix, get_option('mandir')) localedir = join_paths(prefix, get_option('localedir')) @@ -90,43 +99,44 @@ index b075ca89..8d504d3c 100644 gio = dependency('gio-2.0', version : '>= 2.45.8') giounix = dependency('gio-unix-2.0', version : '>= 2.45.8', required: false) diff --git a/meson_options.txt b/meson_options.txt -index bc76c0ab..8a67d012 100644 +index 94f73898..5de6cc7b 100644 --- a/meson_options.txt +++ b/meson_options.txt @@ -1,3 +1,4 @@ +option('sysconfdir_install', type: 'string', value: '', description: 'sysconfdir to use during installation') option('build', type : 'combo', choices : ['all', 'standalone', 'library'], value : 'all', description : 'build type') - option('agent', type : 'boolean', value : true, description : 'enable the fwupd agent') option('consolekit', type : 'boolean', value : true, description : 'enable ConsoleKit support') + option('firmware-packager', type : 'boolean', value : true, description : 'enable firmware-packager installation') diff --git a/plugins/dell-esrt/meson.build b/plugins/dell-esrt/meson.build -index ed4eee70..76dbdb1d 100644 +index e9f12879..a0126dbb 100644 --- a/plugins/dell-esrt/meson.build +++ b/plugins/dell-esrt/meson.build -@@ -37,5 +37,5 @@ configure_file( +@@ -38,6 +38,6 @@ configure_file( output : 'dell-esrt.conf', configuration : con2, install: true, - install_dir: join_paths(sysconfdir, 'fwupd', 'remotes.d'), + install_dir: join_paths(sysconfdir_install, 'fwupd', 'remotes.d'), ) + endif diff --git a/plugins/redfish/meson.build b/plugins/redfish/meson.build -index 205d1394..3223f404 100644 +index 5263048c..c46fac64 100644 --- a/plugins/redfish/meson.build +++ b/plugins/redfish/meson.build -@@ -27,7 +27,7 @@ shared_module('fu_plugin_redfish', +@@ -53,7 +53,7 @@ shared_module('fu_plugin_redfish', ) install_data(['redfish.conf'], -- install_dir: join_paths(sysconfdir, 'fwupd') -+ install_dir: join_paths(sysconfdir_install, 'fwupd') +- install_dir: join_paths(sysconfdir, 'fwupd'), ++ install_dir: join_paths(sysconfdir_install, 'fwupd'), + install_mode: 'rw-r-----', ) - if get_option('tests') diff --git a/plugins/thunderbolt/meson.build b/plugins/thunderbolt/meson.build -index 6b2368fb..2bd06fed 100644 +index 646ed6cb..8d7c59aa 100644 --- a/plugins/thunderbolt/meson.build +++ b/plugins/thunderbolt/meson.build -@@ -31,7 +31,7 @@ fu_plugin_thunderbolt = shared_module('fu_plugin_thunderbolt', +@@ -35,7 +35,7 @@ fu_plugin_thunderbolt = shared_module('fu_plugin_thunderbolt', ) install_data(['thunderbolt.conf'], @@ -136,10 +146,19 @@ index 6b2368fb..2bd06fed 100644 # we use functions from 2.52 in the tests if get_option('tests') and umockdev.found() and gio.version().version_compare('>= 2.52') diff --git a/plugins/uefi-capsule/meson.build b/plugins/uefi-capsule/meson.build -index 0b793a07..ebd3e5ea 100644 +index 708586b0..f29536b1 100644 --- a/plugins/uefi-capsule/meson.build +++ b/plugins/uefi-capsule/meson.build -@@ -97,7 +97,7 @@ if get_option('man') +@@ -21,7 +21,7 @@ if host_machine.system() == 'linux' + output : '35_fwupd', + configuration : con2, + install: true, +- install_dir: join_paths(sysconfdir, 'grub.d') ++ install_dir: join_paths(sysconfdir_install, 'grub.d') + ) + elif host_machine.system() == 'freebsd' + backend_srcs += 'fu-uefi-backend-freebsd.c' +@@ -116,7 +116,7 @@ if get_option('man') endif install_data(['uefi_capsule.conf'], @@ -147,15 +166,4 @@ index 0b793a07..ebd3e5ea 100644 + install_dir: join_paths(sysconfdir_install, 'fwupd') ) - if get_option('tests') -diff --git a/plugins/upower/meson.build b/plugins/upower/meson.build -index 290a3eb6..9ab2f452 100644 ---- a/plugins/upower/meson.build -+++ b/plugins/upower/meson.build -@@ -23,5 +23,5 @@ shared_module('fu_plugin_upower', - ) - - install_data(['upower.conf'], -- install_dir: join_paths(sysconfdir, 'fwupd') -+ install_dir: join_paths(sysconfdir_install, 'fwupd') - ) + # add all the .po files as inputs to watch diff --git a/pkgs/os-specific/linux/firmware/fwupd/default.nix b/pkgs/os-specific/linux/firmware/fwupd/default.nix index 4f3c3a79f5b0..0333a9e43105 100644 --- a/pkgs/os-specific/linux/firmware/fwupd/default.nix +++ b/pkgs/os-specific/linux/firmware/fwupd/default.nix @@ -1,9 +1,10 @@ # Updating? Keep $out/etc synchronized with passthru keys -{ lib, stdenv +{ stdenv +, lib , fetchurl +, fetchpatch , fetchFromGitHub -, substituteAll , gtk-doc , pkg-config , gobject-introspection @@ -15,13 +16,11 @@ , sqlite , libarchive , curl -, help2man , libjcat , libxslt , elfutils , libsmbios , efivar -, gnu-efi , valgrind , meson , libuuid @@ -31,6 +30,7 @@ , ninja , gcab , gnutls +, protobufc , python3 , wrapGAppsHook , json-glib @@ -40,32 +40,24 @@ , vala , makeFontsConf , freefont_ttf -, cairo -, freetype -, fontconfig , pango , tpm2-tss , bubblewrap , efibootmgr , flashrom , tpm2-tools +, fwupd-efi , nixosTests , runCommand +, unstableGitUpdater }: let python = python3.withPackages (p: with p; [ pygobject3 - pycairo - pillow setuptools ]); - installedTestsPython = python3.withPackages (p: with p; [ - pygobject3 - requests - ]); - isx86 = stdenv.isx86_64 || stdenv.isi686; # Dell isn't supported on Aarch64 @@ -89,9 +81,38 @@ let exec python3 -c "$buildCommandPython" ''; + test-firmware = + let + version = "unstable-2021-11-02"; + src = fetchFromGitHub { + name = "fwupd-test-firmware-${version}"; + owner = "fwupd"; + repo = "fwupd-test-firmware"; + rev = "aaa2f9fd68a40684c256dd85b86093cba38ffd9d"; + sha256 = "Slk7CNfkmvmOh3WtIBkPs3NYT96co6i8PwqcbpeVFgA="; + passthru = { + inherit src version; # For update script + updateScript = unstableGitUpdater { + url = "${test-firmware.meta.homepage}.git"; + }; + }; + }; + in + src // { + meta = src.meta // { + # For update script + position = + let + pos = builtins.unsafeGetAttrPos "updateScript" test-firmware; + in + pos.file + ":" + toString pos.line; + }; + }; + + self = stdenv.mkDerivation rec { pname = "fwupd"; - version = "1.5.12"; + version = "1.7.1"; # libfwupd goes to lib # daemon, plug-ins and libfwupdplugin go to out @@ -100,27 +121,27 @@ let src = fetchurl { url = "https://people.freedesktop.org/~hughsient/releases/fwupd-${version}.tar.xz"; - sha256 = "sha256-BluwLlm6s/2H/USARQpAvDR0+X8WP/q0h8VvxA6Qftc="; + sha256 = "sha256-rlbOtEt4byH1TRM6xwvF2cuM1L2gFnM5xmmiKNpn+jw="; }; patches = [ - # Do not try to create useless paths in /var. - ./fix-paths.patch - - # Allow installing + # Since /etc is the domain of NixOS, not Nix, + # we cannot install files there. + # Let’s install the files to $prefix/etc + # while still reading them from /etc. + # NixOS module for fwupd will take take care of copying the files appropriately. ./add-option-for-installation-sysconfdir.patch - # Install plug-ins and libfwupdplugin to out, + # Install plug-ins and libfwupdplugin to $out output, # they are not really part of the library. ./install-fwupdplugin-to-out.patch # Installed tests are installed to different output # we also cannot have fwupd-tests.conf in $out/etc since it would form a cycle. - (substituteAll { - src = ./installed-tests-path.patch; - # Needs a different set of modules than po/make-images. - inherit installedTestsPython; - }) + ./installed-tests-path.patch + + # Tests detect fwupd is installed when prefix is /usr. + ./fix-install-detection.patch ]; nativeBuildInputs = [ @@ -136,8 +157,8 @@ let gnutls docbook_xml_dtd_43 docbook-xsl-nons - help2man libxslt + protobufc # for protoc python wrapGAppsHook vala @@ -151,7 +172,6 @@ let libarchive curl elfutils - gnu-efi libgudev colord libjcat @@ -159,18 +179,17 @@ let json-glib umockdev bash-completion - cairo - freetype - fontconfig pango tpm2-tss efivar + fwupd-efi + protobufc ] ++ lib.optionals haveDell [ libsmbios ]; mesonFlags = [ - "-Dgtkdoc=true" + "-Ddocs=gtkdoc" "-Dplugin_dummy=true" # We are building the official releases. "-Dsupported_build=true" @@ -180,17 +199,10 @@ let "-Dudevdir=lib/udev" "-Dsystemd_root_prefix=${placeholder "out"}" "-Dinstalled_test_prefix=${placeholder "installedTests"}" - "-Defi-libdir=${gnu-efi}/lib" - "-Defi-ldsdir=${gnu-efi}/lib" - "-Defi-includedir=${gnu-efi}/include/efi" - "-Defi_sbat_distro_id=nixos" - "-Defi_sbat_distro_summary=NixOS" - "-Defi_sbat_distro_pkgname=fwupd" - "-Defi_sbat_distro_version=${version}" - "-Defi_sbat_distro_url=https://search.nixos.org/packages?channel=unstable&show=fwupd&from=0&size=50&sort=relevance&query=fwupd" "--localstatedir=/var" "--sysconfdir=/etc" "-Dsysconfdir_install=${placeholder "out"}/etc" + "-Defi_os_dir=nixos" # We do not want to place the daemon into lib (cyclic reference) "--libexecdir=${placeholder "out"}/libexec" @@ -232,13 +244,8 @@ let postPatch = '' patchShebangs \ - contrib/get-version.py \ contrib/generate-version-script.py \ meson_post_install.sh \ - plugins/uefi-capsule/efi/generate_sbat.py \ - plugins/uefi-capsule/efi/generate_binary.py \ - po/make-images \ - po/make-images.sh \ po/test-deps ''; @@ -246,18 +253,20 @@ let addToSearchPath XDG_DATA_DIRS "${shared-mime-info}/share" ''; - postInstall = - let - testFw = fetchFromGitHub { - owner = "fwupd"; - repo = "fwupd-test-firmware"; - rev = "c13bfb26cae5f4f115dd4e08f9f00b3cb9acc25e"; - sha256 = "US81i7mtLEe85KdWz5r+fQTk61IhqjVkzykBaBPuKL4="; - }; - in '' - # These files have weird licenses so they are shipped separately. - cp --recursive --dereference "${testFw}/installed-tests/tests" "$installedTests/libexec/installed-tests/fwupd" - ''; + preInstall = '' + # We have pkexec on PATH so Meson will try to use it when installation fails + # due to being unable to write to e.g. /etc. + # Let’s pretend we already ran pkexec – + # the pkexec on PATH would complain it lacks setuid bit, + # obscuring the underlying error. + # https://github.com/mesonbuild/meson/blob/492cc9bf95d573e037155b588dc5110ded4d9a35/mesonbuild/minstall.py#L558 + export PKEXEC_UID=-1 + ''; + + postInstall = '' + # These files have weird licenses so they are shipped separately. + cp --recursive --dereference "${test-firmware}/installed-tests/tests" "$installedTests/libexec/installed-tests/fwupd" + ''; preFixup = let binPath = [ @@ -294,7 +303,6 @@ let "fwupd/remotes.d/vendor.conf" "fwupd/remotes.d/vendor-directory.conf" "fwupd/thunderbolt.conf" - "fwupd/upower.conf" "fwupd/uefi_capsule.conf" "pki/fwupd/GPG-KEY-Linux-Foundation-Firmware" "pki/fwupd/GPG-KEY-Linux-Vendor-Firmware-Service" @@ -302,6 +310,7 @@ let "pki/fwupd-metadata/GPG-KEY-Linux-Foundation-Metadata" "pki/fwupd-metadata/GPG-KEY-Linux-Vendor-Firmware-Service" "pki/fwupd-metadata/LVFS-CA.pem" + "grub.d/35_fwupd" ] ++ lib.optionals haveDell [ "fwupd/remotes.d/dell-esrt.conf" ] ++ lib.optionals haveRedfish [ @@ -315,6 +324,9 @@ let "invalid" ]; + # For updating. + inherit test-firmware; + tests = let listToPy = list: "[${lib.concatMapStringsSep ", " (f: "'${f}'") list}]"; in { diff --git a/pkgs/os-specific/linux/firmware/fwupd/fix-install-detection.patch b/pkgs/os-specific/linux/firmware/fwupd/fix-install-detection.patch new file mode 100644 index 000000000000..56d7def5c16a --- /dev/null +++ b/pkgs/os-specific/linux/firmware/fwupd/fix-install-detection.patch @@ -0,0 +1,13 @@ +diff --git a/plugins/redfish/fu-self-test.c b/plugins/redfish/fu-self-test.c +index 4710c769..1c68fdb9 100644 +--- a/plugins/redfish/fu-self-test.c ++++ b/plugins/redfish/fu-self-test.c +@@ -27,7 +27,7 @@ fu_test_is_installed_test(void) + const gchar *builddir = g_getenv("G_TEST_BUILDDIR"); + if (builddir == NULL) + return FALSE; +- return g_str_has_prefix(builddir, "/usr"); ++ return g_str_has_prefix(builddir, "/nix"); + } + + static void diff --git a/pkgs/os-specific/linux/firmware/fwupd/fix-paths.patch b/pkgs/os-specific/linux/firmware/fwupd/fix-paths.patch deleted file mode 100644 index 474b250097d0..000000000000 --- a/pkgs/os-specific/linux/firmware/fwupd/fix-paths.patch +++ /dev/null @@ -1,8 +0,0 @@ -diff --git a/data/builder/meson.build b/data/builder/meson.build -index c7a430c0..e69de29b 100644 ---- a/data/builder/meson.build -+++ b/data/builder/meson.build -@@ -1,3 +0,0 @@ --install_data('README.md', -- install_dir : join_paths(localstatedir, 'lib', 'fwupd', 'builder') --) diff --git a/pkgs/os-specific/linux/firmware/fwupd/install-fwupdplugin-to-out.patch b/pkgs/os-specific/linux/firmware/fwupd/install-fwupdplugin-to-out.patch index 347b6862146d..6667156e831c 100644 --- a/pkgs/os-specific/linux/firmware/fwupd/install-fwupdplugin-to-out.patch +++ b/pkgs/os-specific/linux/firmware/fwupd/install-fwupdplugin-to-out.patch @@ -1,8 +1,8 @@ diff --git a/libfwupdplugin/meson.build b/libfwupdplugin/meson.build -index 0abcd45c..51cbc912 100644 +index d6a2ed68..12c82a95 100644 --- a/libfwupdplugin/meson.build +++ b/libfwupdplugin/meson.build -@@ -114,7 +114,8 @@ +@@ -216,7 +216,8 @@ fwupdplugin = library( ], link_args : vflag, link_depends : fwupdplugin_mapfile, @@ -12,26 +12,26 @@ index 0abcd45c..51cbc912 100644 ) fwupdplugin_pkgg = import('pkgconfig') -@@ -167,7 +168,8 @@ - 'GUsb-1.0', +@@ -276,7 +277,8 @@ if get_option('introspection') + girtargets, fwupd_gir[0], ], - install : true + install : true, + install_dir_typelib : bindir / '..' / 'lib' / 'girepository-1.0', ) - gnome.generate_vapi('fwupdplugin', - sources : fwupd_gir[0], + + # Verify the map file is correct -- note we can't actually use the generated diff --git a/meson.build b/meson.build -index b1a523d2..00125997 100644 +index 38aa36b0..3fb7e579 100644 --- a/meson.build +++ b/meson.build -@@ -389,7 +389,7 @@ +@@ -521,7 +521,7 @@ if build_standalone if host_machine.system() == 'windows' - plugin_dir = 'fwupd-plugins-3' + plugin_dir = 'fwupd-plugins-@0@'.format(libfwupdplugin_lt_current) else -- plugin_dir = join_paths(libdir, 'fwupd-plugins-3') -+ plugin_dir = join_paths(bindir, '..', 'lib', 'fwupd-plugins-3') +- plugin_dir = join_paths(libdir, 'fwupd-plugins-@0@'.format(libfwupdplugin_lt_current)) ++ plugin_dir = join_paths(bindir, '..', 'lib', 'fwupd-plugins-@0@'.format(libfwupdplugin_lt_current)) endif conf.set_quoted('FWUPD_PLUGINDIR', plugin_dir) endif diff --git a/pkgs/os-specific/linux/firmware/fwupd/installed-tests-path.patch b/pkgs/os-specific/linux/firmware/fwupd/installed-tests-path.patch index d8f1a533b824..2024e84b0a83 100644 --- a/pkgs/os-specific/linux/firmware/fwupd/installed-tests-path.patch +++ b/pkgs/os-specific/linux/firmware/fwupd/installed-tests-path.patch @@ -1,13 +1,3 @@ -diff --git a/data/device-tests/hardware.py b/data/device-tests/hardware.py -index 7f1e1907..10fee1b8 100755 ---- a/data/device-tests/hardware.py -+++ b/data/device-tests/hardware.py -@@ -1,4 +1,4 @@ --#!/usr/bin/python3 -+#!@installedTestsPython@/bin/python3 - # pylint: disable=wrong-import-position,too-many-locals,unused-argument,wrong-import-order - # - # Copyright (C) 2017 Richard Hughes <richard@hughsie.com> diff --git a/data/installed-tests/meson.build b/data/installed-tests/meson.build index adadbcdd..1b51bb9c 100644 --- a/data/installed-tests/meson.build diff --git a/pkgs/os-specific/linux/fscryptctl/default.nix b/pkgs/os-specific/linux/fscryptctl/default.nix index bd1b414f4cba..2a2a9b41c9c2 100644 --- a/pkgs/os-specific/linux/fscryptctl/default.nix +++ b/pkgs/os-specific/linux/fscryptctl/default.nix @@ -32,7 +32,7 @@ stdenv.mkDerivation rec { documentation for filesystem encryption before using fscryptctl. ''; inherit (src.meta) homepage; - changelog = "https://github.com/google/fscryptctl/releases/tag/v{version}"; + changelog = "https://github.com/google/fscryptctl/releases/tag/v${version}"; license = licenses.asl20; platforms = platforms.linux; maintainers = with maintainers; [ primeos ]; diff --git a/pkgs/os-specific/linux/fscryptctl/legacy.nix b/pkgs/os-specific/linux/fscryptctl/legacy.nix deleted file mode 100644 index 64a409fb58bf..000000000000 --- a/pkgs/os-specific/linux/fscryptctl/legacy.nix +++ /dev/null @@ -1,51 +0,0 @@ -{ lib, stdenv, fetchFromGitHub }: - -# Don't use this for anything important! -# TODO: Drop fscryptctl-experimental after the NixOS 21.03/21.05 release. - -stdenv.mkDerivation rec { - pname = "fscryptctl"; - version = "0.1.0"; - - goPackagePath = "github.com/google/fscrypt"; - - src = fetchFromGitHub { - owner = "google"; - repo = "fscryptctl"; - rev = "v${version}"; - sha256 = "1853hlpklisbqnkb7a921dsf0vp2nr2im26zpmrs592cnpsvk3hb"; - }; - - makeFlags = [ "DESTDIR=$(out)/bin" ]; - - meta = with lib; { - description = "Small C tool for Linux filesystem encryption"; - longDescription = '' - fscryptctl is a low-level tool written in C that handles raw keys and - manages policies for Linux filesystem encryption, specifically the - "fscrypt" kernel interface which is supported by the ext4, f2fs, and - UBIFS filesystems. - fscryptctl is mainly intended for embedded systems which can't use the - full-featured fscrypt tool, or for testing or experimenting with the - kernel interface to Linux filesystem encryption. fscryptctl does not - handle key generation, key stretching, key wrapping, or PAM integration. - Most users should use the fscrypt tool instead, which supports these - features and generally is much easier to use. - As fscryptctl is intended for advanced users, you should read the kernel - documentation for filesystem encryption before using fscryptctl. - ''; - inherit (src.meta) homepage; - license = licenses.asl20; - platforms = platforms.linux; - maintainers = with maintainers; [ primeos ]; - knownVulnerabilities = [ '' - fscryptctl version 1.0.0 was released and now uses v2 encryption - policies. fscryptctl-experimental will remain at version 0.1.0 which - still supports the v1 encryption policies. Please try to switch from the - "fscryptctl-experimental" package to "fscryptctl". The v1 encryption - policies can be insecure, are hard to use correctly, and have different - semantics from v2 policies (which is why they are no longer supported in - fscryptctl 1.0.0+). - '' ]; - }; -} diff --git a/pkgs/os-specific/linux/intel-cmt-cat/default.nix b/pkgs/os-specific/linux/intel-cmt-cat/default.nix new file mode 100644 index 000000000000..748ae5b52670 --- /dev/null +++ b/pkgs/os-specific/linux/intel-cmt-cat/default.nix @@ -0,0 +1,25 @@ +{ lib, stdenv, fetchFromGitHub }: + +stdenv.mkDerivation rec { + version = "4.2.0"; + pname = "intel-cmt-cat"; + + src = fetchFromGitHub { + owner = "intel"; + repo = "intel-cmt-cat"; + rev = "v${version}"; + sha256 = "sha256-k66FZI76d9HcWEMwEgOlObdPmRhuK5h2GKXOzUY0BKQ="; + }; + + enableParallelBuilding = true; + + makeFlags = [ "PREFIX=$(out)" "NOLDCONFIG=y" ]; + + meta = with lib; { + description = "User space software for Intel(R) Resource Director Technology"; + homepage = "https://github.com/intel/intel-cmt-cat"; + license = licenses.bsd3; + maintainers = with maintainers; [ arkivm ]; + platforms = [ "x86_64-linux" ]; + }; +} diff --git a/pkgs/os-specific/linux/iotop-c/default.nix b/pkgs/os-specific/linux/iotop-c/default.nix index ea40ff79f64a..680bc53bd91b 100644 --- a/pkgs/os-specific/linux/iotop-c/default.nix +++ b/pkgs/os-specific/linux/iotop-c/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "iotop-c"; - version = "1.19"; + version = "1.20"; src = fetchFromGitHub { owner = "Tomas-M"; repo = "iotop"; rev = "v${version}"; - sha256 = "sha256-CuZwOIhjl6fpEvfw/4CTjKQkxazLL/NGujmNcx1Jrbc="; + sha256 = "sha256-6Pg2CLWzsD6EPRKD2xMMgKFkpbSheiMMkd0BvHh9onA="; }; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/os-specific/linux/iptstate/default.nix b/pkgs/os-specific/linux/iptstate/default.nix index 94693f1559e5..4e3693aba6f1 100644 --- a/pkgs/os-specific/linux/iptstate/default.nix +++ b/pkgs/os-specific/linux/iptstate/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "iptstate"; - version = "2.2.6"; + version = "2.2.7"; src = fetchurl { url = "https://github.com/jaymzh/iptstate/releases/download/v${version}/${pname}-${version}.tar.bz2"; - sha256 = "bef8eb67a4533e53079f397b71e91dd34da23f8cbd65cb2d5b67cb907b00c068"; + sha256 = "sha256-iW3wYCiFRWomMfeV1jT8ITEeUF+MkQNI5jEoYPIJeVU="; }; buildInputs = [ libnetfilter_conntrack ncurses ]; diff --git a/pkgs/os-specific/linux/irqbalance/default.nix b/pkgs/os-specific/linux/irqbalance/default.nix index 4b7a4527e2c7..b11be3f27353 100644 --- a/pkgs/os-specific/linux/irqbalance/default.nix +++ b/pkgs/os-specific/linux/irqbalance/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchFromGitHub, autoreconfHook, pkg-config, glib, ncurses, libcap_ng }: +{ lib, stdenv, fetchFromGitHub, fetchpatch, autoreconfHook, pkg-config, glib, ncurses, libcap_ng }: stdenv.mkDerivation rec { pname = "irqbalance"; @@ -11,6 +11,16 @@ stdenv.mkDerivation rec { sha256 = "sha256-K+Nv6HqBZb0pwfNV127QDq+suaUD7TTV413S6j8NdUU="; }; + patches = [ + # pull pending upstream inclusion fix for ncurses-6.3: + # https://github.com/Irqbalance/irqbalance/pull/194 + (fetchpatch { + name = "ncurses-6.3.patch"; + url = "https://github.com/Irqbalance/irqbalance/commit/f8bdd0e64284d841544fd3ebe22f4652902ba8d2.patch"; + sha256 = "sha256-QJIXr8BiKmn/81suuhNJsBRhY2as19/e480lsp2wd6g="; + }) + ]; + nativeBuildInputs = [ autoreconfHook pkg-config ]; buildInputs = [ glib ncurses libcap_ng ]; diff --git a/pkgs/os-specific/linux/kernel/common-config.nix b/pkgs/os-specific/linux/kernel/common-config.nix index b1df3c6df3dd..3dce97951a78 100644 --- a/pkgs/os-specific/linux/kernel/common-config.nix +++ b/pkgs/os-specific/linux/kernel/common-config.nix @@ -750,6 +750,7 @@ let SERIAL_DEV_BUS = whenAtLeast "4.11" yes; # enables support for serial devices SERIAL_DEV_CTRL_TTYPORT = whenAtLeast "4.11" yes; # enables support for TTY serial devices + BT_HCIBTUSB_MTK = whenAtLeast "5.3" yes; # MediaTek protocol support BT_HCIUART_QCA = whenAtLeast "4.3" yes; # Qualcomm Atheros protocol support BT_HCIUART_SERDEV = whenAtLeast "4.12" yes; # required by BT_HCIUART_QCA BT_HCIUART = whenAtLeast "2.5.45" module; # required for BT devices with serial port interface (QCA6390) @@ -866,6 +867,8 @@ let LIRC = mkMerge [ (whenOlder "4.16" module) (whenAtLeast "4.17" yes) ]; + SCHED_CORE = whenAtLeast "5.14" yes; + } // optionalAttrs (stdenv.hostPlatform.system == "x86_64-linux" || stdenv.hostPlatform.system == "aarch64-linux") { # Enable CPU/memory hotplug support # Allows you to dynamically add & remove CPUs/memory to a VM client running NixOS without requiring a reboot diff --git a/pkgs/os-specific/linux/kernel/hardened/patches.json b/pkgs/os-specific/linux/kernel/hardened/patches.json index c0f9882cc145..f6c95acf4c6f 100644 --- a/pkgs/os-specific/linux/kernel/hardened/patches.json +++ b/pkgs/os-specific/linux/kernel/hardened/patches.json @@ -2,51 +2,51 @@ "4.14": { "patch": { "extra": "-hardened1", - "name": "linux-hardened-4.14.252-hardened1.patch", - "sha256": "1isqlqg4diz0i3f77rigvb07fs2p1v9w2h5165l0rnkb6h26i1gn", - "url": "https://github.com/anthraxx/linux-hardened/releases/download/4.14.252-hardened1/linux-hardened-4.14.252-hardened1.patch" + "name": "linux-hardened-4.14.254-hardened1.patch", + "sha256": "1mg4zims7ckb0ddnnahk1cj73lhdh7x7xkjz4cgsvwndw0qvmhdi", + "url": "https://github.com/anthraxx/linux-hardened/releases/download/4.14.254-hardened1/linux-hardened-4.14.254-hardened1.patch" }, - "sha256": "022rw51s8fzz6wcxa9xq6h60fglfx0hq7bmqgs5dlrci6plv4fwk", - "version": "4.14.252" + "sha256": "0ihdlsg4jg9wwhhcbjjmrcchnl9pc0szh21nwmbhwnxgqcdmrnfz", + "version": "4.14.254" }, "4.19": { "patch": { "extra": "-hardened1", - "name": "linux-hardened-4.19.213-hardened1.patch", - "sha256": "03lk4m6sm3545s0xxx0w4sqgrsvrxqm8qg7swn05s36jj20viprm", - "url": "https://github.com/anthraxx/linux-hardened/releases/download/4.19.213-hardened1/linux-hardened-4.19.213-hardened1.patch" + "name": "linux-hardened-4.19.216-hardened1.patch", + "sha256": "0a8rg0lc0pj6zlkbrd3fjrjgg3f18918zzs8q4nld092hqjfjbsm", + "url": "https://github.com/anthraxx/linux-hardened/releases/download/4.19.216-hardened1/linux-hardened-4.19.216-hardened1.patch" }, - "sha256": "162f5y3jplql3ca5xy889mq6izjinryx2kx16zp582yvsqf8rwiq", - "version": "4.19.213" + "sha256": "0cs8yy5jfbvvi5j9f3kzyc4j0fjylxdj1641f53ga6gkmjmayv3d", + "version": "4.19.216" }, "5.10": { "patch": { "extra": "-hardened1", - "name": "linux-hardened-5.10.75-hardened1.patch", - "sha256": "17gm50aislxihfnmr4vi0p0gpg13m2pbldjpi81clnx93a7rrfw2", - "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.10.75-hardened1/linux-hardened-5.10.75-hardened1.patch" + "name": "linux-hardened-5.10.78-hardened1.patch", + "sha256": "06jbxx6vcd6xa0f8y80im14cdwb8dsk21kx18q7c77gjw628b1i1", + "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.10.78-hardened1/linux-hardened-5.10.78-hardened1.patch" }, - "sha256": "0jrhhk89587caw54nhnwms93kq33qdm75x5f18cp61xrxxgjyaqa", - "version": "5.10.75" + "sha256": "03q5lrv8gr9hnm7984pxi9kwsvxrn21qwykj60amisi2wac6r05y", + "version": "5.10.78" }, "5.14": { "patch": { "extra": "-hardened1", - "name": "linux-hardened-5.14.14-hardened1.patch", - "sha256": "1hx5yal8jqnxr9c9ikvc6d0xp99kqjarj67720v9d4wvlmgsfabj", - "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.14.14-hardened1/linux-hardened-5.14.14-hardened1.patch" + "name": "linux-hardened-5.14.17-hardened1.patch", + "sha256": "08s26hmmaji51aczh9spbg8ngbxz5mr067dgi05djp3cgs2hl5pw", + "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.14.17-hardened1/linux-hardened-5.14.17-hardened1.patch" }, - "sha256": "0snh17ah49wmfmazy6x42rhvl484h657y0iq4l09a885sjb4xzsd", - "version": "5.14.14" + "sha256": "0q7df51yk6di1m8ky0gplkyx6smlr9inxrd569qv3ww3ykg933sd", + "version": "5.14.17" }, "5.4": { "patch": { "extra": "-hardened1", - "name": "linux-hardened-5.4.155-hardened1.patch", - "sha256": "0l8h9i6asiypgbxl90370kzfsyyc3f4vwl2r191arvrsgw863bid", - "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.4.155-hardened1/linux-hardened-5.4.155-hardened1.patch" + "name": "linux-hardened-5.4.158-hardened1.patch", + "sha256": "1pnxwvy5x04b95bfia63916qlrj5mrp2d54dcc4hg5k29vm0z6a5", + "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.4.158-hardened1/linux-hardened-5.4.158-hardened1.patch" }, - "sha256": "0f2hfz76rnhmv99zhbh7n1z48316ilxrxrnh4b5m3lj84y80y36c", - "version": "5.4.155" + "sha256": "0ncdkf1iz49458k3dvq3dc5b2r9dp21jsn3ffm9lbhlgvkn8y0bf", + "version": "5.4.158" } } diff --git a/pkgs/os-specific/linux/kernel/linux-4.14.nix b/pkgs/os-specific/linux/kernel/linux-4.14.nix index 5fc975b8c6f0..2073d28f078f 100644 --- a/pkgs/os-specific/linux/kernel/linux-4.14.nix +++ b/pkgs/os-specific/linux/kernel/linux-4.14.nix @@ -3,7 +3,7 @@ with lib; buildLinux (args // rec { - version = "4.14.253"; + version = "4.14.255"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed modDirVersion = if (modDirVersionArg == null) then concatStringsSep "." (take 3 (splitVersion "${version}.0")) else modDirVersionArg; @@ -13,6 +13,6 @@ buildLinux (args // rec { src = fetchurl { url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz"; - sha256 = "1mgl55c8fa2ry4qp0phkdkzjhwfnkbhvi266n348kyjyqnjl234f"; + sha256 = "1mxjwqijnlvrdbpd973kdycz1dwklfkj9vpnj1cihgsf880q02zh"; }; } // (args.argsOverride or {})) diff --git a/pkgs/os-specific/linux/kernel/linux-4.19.nix b/pkgs/os-specific/linux/kernel/linux-4.19.nix index afd34eaf9020..1e813076d1f9 100644 --- a/pkgs/os-specific/linux/kernel/linux-4.19.nix +++ b/pkgs/os-specific/linux/kernel/linux-4.19.nix @@ -3,7 +3,7 @@ with lib; buildLinux (args // rec { - version = "4.19.214"; + version = "4.19.217"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed modDirVersion = if (modDirVersionArg == null) then concatStringsSep "." (take 3 (splitVersion "${version}.0")) else modDirVersionArg; @@ -13,6 +13,6 @@ buildLinux (args // rec { src = fetchurl { url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz"; - sha256 = "0i08np4gxiks7chp6j328pdqb02apbba53mj4zvxb9v37qpxzqgz"; + sha256 = "01500jcjvhbkn7xcan564jw0nnwc12cf8hhvl8118jqqqw612lc5"; }; } // (args.argsOverride or {})) diff --git a/pkgs/os-specific/linux/kernel/linux-4.4.nix b/pkgs/os-specific/linux/kernel/linux-4.4.nix index e5672de557ac..f39340b59bca 100644 --- a/pkgs/os-specific/linux/kernel/linux-4.4.nix +++ b/pkgs/os-specific/linux/kernel/linux-4.4.nix @@ -1,12 +1,12 @@ { buildPackages, fetchurl, perl, buildLinux, nixosTests, stdenv, ... } @ args: buildLinux (args // rec { - version = "4.4.290"; + version = "4.4.292"; extraMeta.branch = "4.4"; extraMeta.broken = stdenv.isAarch64; src = fetchurl { url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz"; - sha256 = "1dcx58nmzkcc5nz2b5b7mgw4w7y28v3s9wd8h78czdqfa0kxrl20"; + sha256 = "0v5rz8na1d458grc49x3j1951mhvxvqzjq5g9rv1hi0p9rjala97"; }; } // (args.argsOverride or {})) diff --git a/pkgs/os-specific/linux/kernel/linux-4.9.nix b/pkgs/os-specific/linux/kernel/linux-4.9.nix index b929e930eb03..f58f7c4a7e4d 100644 --- a/pkgs/os-specific/linux/kernel/linux-4.9.nix +++ b/pkgs/os-specific/linux/kernel/linux-4.9.nix @@ -1,12 +1,12 @@ { buildPackages, fetchurl, perl, buildLinux, nixosTests, stdenv, ... } @ args: buildLinux (args // rec { - version = "4.9.288"; + version = "4.9.290"; extraMeta.branch = "4.9"; extraMeta.broken = stdenv.isAarch64; src = fetchurl { url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz"; - sha256 = "0v5592v565bl924c23m1n7p5zddr0w7zn8m97pmikk6p7cyhjq9n"; + sha256 = "1ns0xbcgv0ix4b3xkcws8g3ks1a31kzc5whmkf9arz1k8si5mpnd"; }; } // (args.argsOverride or {})) diff --git a/pkgs/os-specific/linux/kernel/linux-5.10.nix b/pkgs/os-specific/linux/kernel/linux-5.10.nix index 3376f30212a7..05f2b07ecc22 100644 --- a/pkgs/os-specific/linux/kernel/linux-5.10.nix +++ b/pkgs/os-specific/linux/kernel/linux-5.10.nix @@ -3,7 +3,7 @@ with lib; buildLinux (args // rec { - version = "5.10.76"; + version = "5.10.79"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed modDirVersion = if (modDirVersionArg == null) then concatStringsSep "." (take 3 (splitVersion "${version}.0")) else modDirVersionArg; @@ -13,6 +13,6 @@ buildLinux (args // rec { src = fetchurl { url = "mirror://kernel/linux/kernel/v5.x/linux-${version}.tar.xz"; - sha256 = "140qkvs88b5zh6mxxzpf36z1r8bbvyh3yigripqjz1k236x0j2j8"; + sha256 = "1bd86ywff2mv73sybjdjlvvvhnmsv891jlm17h5nvqifdbhmb6g4"; }; } // (args.argsOverride or {})) diff --git a/pkgs/os-specific/linux/kernel/linux-5.14.nix b/pkgs/os-specific/linux/kernel/linux-5.14.nix index e9d10e5d4683..66bbb131d8c1 100644 --- a/pkgs/os-specific/linux/kernel/linux-5.14.nix +++ b/pkgs/os-specific/linux/kernel/linux-5.14.nix @@ -3,7 +3,7 @@ with lib; buildLinux (args // rec { - version = "5.14.15"; + version = "5.14.18"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed modDirVersion = if (modDirVersionArg == null) then concatStringsSep "." (take 3 (splitVersion "${version}.0")) else modDirVersionArg; @@ -13,6 +13,6 @@ buildLinux (args // rec { src = fetchurl { url = "mirror://kernel/linux/kernel/v5.x/linux-${version}.tar.xz"; - sha256 = "01m4qw1z7xn3ngsbm1bvcvikqpkjjr9n8585556wkmz9d469mwvl"; + sha256 = "1pr7qh2wjw7h6r3fixg9ia5r3na7vdb6b4sp9wnbifnqckahzwis"; }; } // (args.argsOverride or { })) diff --git a/pkgs/os-specific/linux/kernel/linux-5.15.nix b/pkgs/os-specific/linux/kernel/linux-5.15.nix index 739a31f635c6..e6ec3549aeb5 100644 --- a/pkgs/os-specific/linux/kernel/linux-5.15.nix +++ b/pkgs/os-specific/linux/kernel/linux-5.15.nix @@ -3,7 +3,7 @@ with lib; buildLinux (args // rec { - version = "5.15"; + version = "5.15.2"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed modDirVersion = if (modDirVersionArg == null) then concatStringsSep "." (take 3 (splitVersion "${version}.0")) else modDirVersionArg; @@ -13,6 +13,6 @@ buildLinux (args // rec { src = fetchurl { url = "mirror://kernel/linux/kernel/v5.x/linux-${version}.tar.xz"; - sha256 = "sha256-V7LPaZGRDjtnobNJACLooGdLaWXHTBLaHpnRONGZHug="; + sha256 = "0xdi799k15l7l9kxlq4qbp79mp1c38vxal4z4p9l5gl194x06d2n"; }; } // (args.argsOverride or { })) diff --git a/pkgs/os-specific/linux/kernel/linux-5.4.nix b/pkgs/os-specific/linux/kernel/linux-5.4.nix index 3c19d6314388..a3cd3c0f9db2 100644 --- a/pkgs/os-specific/linux/kernel/linux-5.4.nix +++ b/pkgs/os-specific/linux/kernel/linux-5.4.nix @@ -3,7 +3,7 @@ with lib; buildLinux (args // rec { - version = "5.4.156"; + version = "5.4.159"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed modDirVersion = if (modDirVersionArg == null) then concatStringsSep "." (take 3 (splitVersion "${version}.0")) else modDirVersionArg; @@ -13,6 +13,6 @@ buildLinux (args // rec { src = fetchurl { url = "mirror://kernel/linux/kernel/v5.x/linux-${version}.tar.xz"; - sha256 = "1zkpqfhrc5n0yiij3jzvzywgabva53c8668f1ly1pkrzcbj77zh6"; + sha256 = "0hw68yjf0c8kahwra8hq863318cbyqc89f429z75scmb9rgk466p"; }; } // (args.argsOverride or {})) diff --git a/pkgs/os-specific/linux/kernel/linux-libre.nix b/pkgs/os-specific/linux/kernel/linux-libre.nix index 85456ad49f7e..19608cb56579 100644 --- a/pkgs/os-specific/linux/kernel/linux-libre.nix +++ b/pkgs/os-specific/linux/kernel/linux-libre.nix @@ -1,8 +1,8 @@ { stdenv, lib, fetchsvn, linux , scripts ? fetchsvn { url = "https://www.fsfla.org/svn/fsfla/software/linux-libre/releases/branches/"; - rev = "18413"; - sha256 = "1s0nr3pnczr1ijv86307mfhmkk7xn5ah46wx6jrx857agcd73fzq"; + rev = "18452"; + sha256 = "0l9xnblid2nv6afp4d8g6kwlhwbw72cnqfaf2lix65bqc1ivdpl9"; } , ... }: diff --git a/pkgs/os-specific/linux/kernel/linux-lqx.nix b/pkgs/os-specific/linux/kernel/linux-lqx.nix index 8c8b764a8812..98a340cf9480 100644 --- a/pkgs/os-specific/linux/kernel/linux-lqx.nix +++ b/pkgs/os-specific/linux/kernel/linux-lqx.nix @@ -1,7 +1,7 @@ { lib, fetchFromGitHub, buildLinux, linux_zen, ... } @ args: let - version = "5.14.14"; + version = "5.14.16"; suffix = "lqx1"; in @@ -14,7 +14,7 @@ buildLinux (args // { owner = "zen-kernel"; repo = "zen-kernel"; rev = "v${version}-${suffix}"; - sha256 = "sha256-gwWZNGHmbKQajMP4mu3XT2Xf93MkcNpAXW8h94O4pNM="; + sha256 = "sha256-nWeHvKnVo/ln8sTLdFTK1pG09HMTdZ75a+3Ehxjd5pc="; }; extraMeta = { diff --git a/pkgs/os-specific/linux/kernel/linux-testing-bcachefs.nix b/pkgs/os-specific/linux/kernel/linux-testing-bcachefs.nix index 48f1a22475fc..37b03bc28ff9 100644 --- a/pkgs/os-specific/linux/kernel/linux-testing-bcachefs.nix +++ b/pkgs/os-specific/linux/kernel/linux-testing-bcachefs.nix @@ -1,9 +1,9 @@ { lib , fetchpatch , kernel -, date ? "2021-07-08" -, commit ? "3693b2ca83ff9eda49660b31299d2bebe3a1075f" -, diffHash ? "1sfq3vwc2kxa761s292f2cqrm0vvqvkdx6drpyn5yaxwnapwidcw" +, date ? "2021-11-06" +, commit ? "10669a2c540de3276c8d2fc0e43be62f2886f377" +, diffHash ? "1rn72wd8jg919j74x8banl70b2bdd6r9fgvnw693j20dq96j5cnw" , kernelPatches # must always be defined in bcachefs' all-packages.nix entry because it's also a top-level attribute supplied by callPackage , argsOverride ? {} , ... @@ -16,7 +16,6 @@ extraMeta = { branch = "master"; maintainers = with lib.maintainers; [ davidak chiiruno ]; - platforms = [ "x86_64-linux" ]; }; } // argsOverride; @@ -30,4 +29,4 @@ extraConfig = "BCACHEFS_FS m"; } ] ++ kernelPatches; -})).overrideAttrs ({ meta ? {}, ... }: { meta = meta // { broken = true; }; }) +})) diff --git a/pkgs/os-specific/linux/kernel/linux-xanmod.nix b/pkgs/os-specific/linux/kernel/linux-xanmod.nix index e21530cba4fa..f28f6c0cef55 100644 --- a/pkgs/os-specific/linux/kernel/linux-xanmod.nix +++ b/pkgs/os-specific/linux/kernel/linux-xanmod.nix @@ -1,7 +1,7 @@ { lib, stdenv, buildLinux, fetchFromGitHub, ... } @ args: let - version = "5.14.15"; + version = "5.14.16"; release = "1"; suffix = "xanmod${release}-cacule"; in @@ -13,7 +13,7 @@ buildLinux (args // rec { owner = "xanmod"; repo = "linux"; rev = modDirVersion; - sha256 = "sha256-Z0A2D2t9rDUav4VpG3XdI13LConfWWs7PtsVfLyEQI8="; + sha256 = "sha256-ro7WnN0BPxW/8sajUyGTnvmbemKJEadSBcFmjZ+Wtrs="; }; structuredExtraConfig = with lib.kernel; { diff --git a/pkgs/os-specific/linux/kernel/linux-zen.nix b/pkgs/os-specific/linux/kernel/linux-zen.nix index 5b354bee7aad..e259ec04f28a 100644 --- a/pkgs/os-specific/linux/kernel/linux-zen.nix +++ b/pkgs/os-specific/linux/kernel/linux-zen.nix @@ -2,7 +2,7 @@ let # having the full version string here makes it easier to update - modDirVersion = "5.14.14-zen1"; + modDirVersion = "5.15.2-zen1"; parts = lib.splitString "-" modDirVersion; version = lib.elemAt parts 0; suffix = lib.elemAt parts 1; @@ -19,7 +19,7 @@ buildLinux (args // { owner = "zen-kernel"; repo = "zen-kernel"; rev = "v${modDirVersion}"; - sha256 = "sha256-cW3i672F7dmU3tzR1cJCkrm8T6F9uYt4DyMFDL37Fpo="; + sha256 = "sha256-6cYKlRAd8kbphIThmTdWieH322Rj1KSmCJCmYRt8o2w="; }; structuredExtraConfig = with lib.kernel; { diff --git a/pkgs/os-specific/linux/kernel/patches.nix b/pkgs/os-specific/linux/kernel/patches.nix index b818ddc5f2ac..f64a0a0ef158 100644 --- a/pkgs/os-specific/linux/kernel/patches.nix +++ b/pkgs/os-specific/linux/kernel/patches.nix @@ -53,7 +53,7 @@ extra = src.extra; inherit version sha256; }; - patches = builtins.fromJSON (builtins.readFile ./hardened/patches.json); + patches = lib.importJSON ./hardened/patches.json; in lib.mapAttrs mkPatch patches; # https://bugzilla.kernel.org/show_bug.cgi?id=197591#c6 diff --git a/pkgs/os-specific/linux/kvmfr/default.nix b/pkgs/os-specific/linux/kvmfr/default.nix index a7949c85c2ee..6b5f31a1d350 100644 --- a/pkgs/os-specific/linux/kvmfr/default.nix +++ b/pkgs/os-specific/linux/kvmfr/default.nix @@ -28,5 +28,6 @@ stdenv.mkDerivation rec { license = licenses.gpl2Plus; maintainers = with maintainers; [ j-brn ]; platforms = [ "x86_64-linux" ]; + broken = kernel.kernelOlder "5.3"; }; } diff --git a/pkgs/os-specific/linux/libsemanage/default.nix b/pkgs/os-specific/linux/libsemanage/default.nix index 11a6f2755d4c..0f9f26c8c5b0 100644 --- a/pkgs/os-specific/linux/libsemanage/default.nix +++ b/pkgs/os-specific/linux/libsemanage/default.nix @@ -16,9 +16,11 @@ stdenv.mkDerivation rec { outputs = [ "out" "dev" "man" ] ++ optional enablePython "py"; - nativeBuildInputs = [ bison flex pkg-config ]; + strictDeps = true; + + nativeBuildInputs = [ bison flex pkg-config ] ++ optional enablePython swig; buildInputs = [ libsepol libselinux bzip2 audit ] - ++ optionals enablePython [ swig python ]; + ++ optional enablePython python; makeFlags = [ "PREFIX=$(out)" @@ -26,6 +28,7 @@ stdenv.mkDerivation rec { "MAN3DIR=$(man)/share/man/man3" "MAN5DIR=$(man)/share/man/man5" "PYTHON=python" + "PYPREFIX=python" "PYTHONLIBDIR=$(py)/${python.sitePackages}" "DEFAULT_SEMANAGE_CONF_LOCATION=$(out)/etc/selinux/semanage.conf" ]; @@ -42,6 +45,8 @@ stdenv.mkDerivation rec { installTargets = [ "install" ] ++ optionals enablePython [ "install-pywrap" ]; + enableParallelBuilding = true; + meta = removeAttrs libsepol.meta ["outputsToInstall"] // { description = "Policy management tools for SELinux"; license = lib.licenses.lgpl21; diff --git a/pkgs/os-specific/linux/msr/000-include-sysmacros.patch b/pkgs/os-specific/linux/msr/000-include-sysmacros.patch new file mode 100644 index 000000000000..5fa96cd14699 --- /dev/null +++ b/pkgs/os-specific/linux/msr/000-include-sysmacros.patch @@ -0,0 +1,11 @@ +diff -Naur msr-old/msr.c msr-20060208/msr.c +--- msr-old/msr.c 1969-12-31 21:00:01.000000000 -0300 ++++ msr-20060208/msr.c 2021-11-02 21:19:34.576722617 -0300 +@@ -19,6 +19,7 @@ + #include <stdio.h> + #include <sys/types.h> + #include <sys/stat.h> ++#include <sys/sysmacros.h> + #include <fcntl.h> + #include <errno.h> + #include <unistd.h> diff --git a/pkgs/os-specific/linux/msr/default.nix b/pkgs/os-specific/linux/msr/default.nix new file mode 100644 index 000000000000..0ffc46012096 --- /dev/null +++ b/pkgs/os-specific/linux/msr/default.nix @@ -0,0 +1,40 @@ +{ lib +, stdenv +, fetchzip +, installShellFiles +}: + +stdenv.mkDerivation rec { + pname = "msr"; + version = "20060208"; + + src = fetchzip { + name = "${pname}-${version}"; + url = "http://www.etallen.com/msr/${pname}-${version}.src.tar.gz"; + hash = "sha256-e01qYWbOALkXp5NpexuVodMxA3EBySejJ6ZBpZjyT+E="; + }; + + nativeBuildInputs = [ + installShellFiles + ]; + + patches = [ + ./000-include-sysmacros.patch + ]; + + installPhase = '' + runHook preInstall + mkdir -p $out/bin/ + cp msr $out/bin/ + installManPage msr.man + runHook postInstall + ''; + + meta = with lib; { + homepage = "http://www.etallen.com/msr.html"; + description = "Linux tool to display or modify x86 model-specific registers (MSRs)"; + license = licenses.bsd0; + maintainers = with maintainers; [ AndersonTorres ]; + platforms = [ "i686-linux" "x86_64-linux" ]; + }; +} diff --git a/pkgs/os-specific/linux/mwprocapture/default.nix b/pkgs/os-specific/linux/mwprocapture/default.nix index ca5b82b87858..769bb1e43b44 100644 --- a/pkgs/os-specific/linux/mwprocapture/default.nix +++ b/pkgs/os-specific/linux/mwprocapture/default.nix @@ -4,25 +4,25 @@ with lib; let bits = - if stdenv.is64bit then "64" - else "32"; + if stdenv.is64bit then "64" + else "32"; libpath = makeLibraryPath [ stdenv.cc.cc stdenv.glibc alsa-lib ]; in stdenv.mkDerivation rec { - name = "mwprocapture-1.3.0.${version}-${kernel.version}"; - version = "4236"; + pname = "mwprocapture"; + subVersion = "4236"; + version = "1.3.0.${subVersion}-${kernel.version}"; src = fetchurl { - url = "https://www.magewell.com/files/drivers/ProCaptureForLinux_${version}.tar.gz"; + url = "https://www.magewell.com/files/drivers/ProCaptureForLinux_${subVersion}.tar.gz"; sha256 = "1mfgj84km276sq5i8dny1vqp2ycqpvgplrmpbqwnk230d0w3qs74"; }; nativeBuildInputs = kernel.moduleBuildDependencies; - preConfigure = - '' + preConfigure = '' cd ./src export INSTALL_MOD_PATH="$out" ''; diff --git a/pkgs/os-specific/linux/nftables/default.nix b/pkgs/os-specific/linux/nftables/default.nix index 73adcd786057..ebca6b2623c6 100644 --- a/pkgs/os-specific/linux/nftables/default.nix +++ b/pkgs/os-specific/linux/nftables/default.nix @@ -43,7 +43,7 @@ stdenv.mkDerivation rec { meta = { description = "The project that aims to replace the existing {ip,ip6,arp,eb}tables framework"; homepage = "https://netfilter.org/projects/nftables/"; - license = licenses.gpl2; + license = licenses.gpl2Only; platforms = platforms.linux; maintainers = with maintainers; [ izorkin ]; }; diff --git a/pkgs/os-specific/linux/nvidia-x11/builder.sh b/pkgs/os-specific/linux/nvidia-x11/builder.sh index 51bd4d725a8b..d108ca0d0060 100755 --- a/pkgs/os-specific/linux/nvidia-x11/builder.sh +++ b/pkgs/os-specific/linux/nvidia-x11/builder.sh @@ -106,8 +106,16 @@ installPhase() { sed -E "s#(libEGL_nvidia)#$i/lib/\\1#" 10_nvidia.json > 10_nvidia.json.fixed sed -E "s#(libnvidia-egl-wayland)#$i/lib/\\1#" 10_nvidia_wayland.json > 10_nvidia_wayland.json.fixed - install -Dm644 10_nvidia.json.fixed $i/share/glvnd/egl_vendor.d/nvidia.json - install -Dm644 10_nvidia_wayland.json.fixed $i/share/glvnd/egl_vendor.d/nvidia_wayland.json + install -Dm644 10_nvidia.json.fixed $i/share/glvnd/egl_vendor.d/10_nvidia.json + install -Dm644 10_nvidia_wayland.json.fixed $i/share/egl/egl_external_platform.d/10_nvidia_wayland.json + + if [[ -f "15_nvidia_gbm.json" ]]; then + sed -E "s#(libnvidia-egl-gbm)#$i/lib/\\1#" 15_nvidia_gbm.json > 15_nvidia_gbm.json.fixed + install -Dm644 15_nvidia_gbm.json.fixed $i/share/egl/egl_external_platform.d/15_nvidia_gbm.json + + mkdir -p $i/lib/gbm + ln -s $i/lib/libnvidia-allocator.so $i/lib/gbm/nvidia-drm_gbm.so + fi fi done diff --git a/pkgs/os-specific/linux/nvidia-x11/default.nix b/pkgs/os-specific/linux/nvidia-x11/default.nix index 268a0b09c261..d88d18b85caf 100644 --- a/pkgs/os-specific/linux/nvidia-x11/default.nix +++ b/pkgs/os-specific/linux/nvidia-x11/default.nix @@ -45,12 +45,16 @@ rec { url = "https://developer.nvidia.com/vulkan-beta-${lib.concatStrings (lib.splitString "." version)}-linux"; }; + # Update note: + # If you add a legacy driver here, also update `top-level/linux-kernels.nix`, + # adding to the `nvidia_x11_legacy*` entries. + # Last one supporting Kepler architecture legacy_470 = generic { - version = "470.82.00"; - sha256_64bit = "sha256:0i35frgil917ig1s2qsgqww58h66gabnxz3q39vcl3rlwb0pmgfh"; - settingsSha256 = "sha256:1kacgifzqqi2zjq62m404w99iv168j5a4xg7xbfnll62vzx7yr5j"; - persistencedSha256 = "sha256:06qsjp0n872b37wvhnwaddn1nrwn668zskmkcmpx33bv1940apsk"; + version = "470.86"; + sha256_64bit = "sha256:0krwcxc0j19vjnk8sv6mx1lin2rm8hcfhc2hg266846jvcws1dsg"; + settingsSha256 = "sha256:1lnj5hwmfkzs664fxlhljqy323394s1i7qzlpsjyrpm07sa93bky"; + persistencedSha256 = "sha256:0apj764zc81ayb8nm9bf7cdicfinarv0gfijy2dxynbwz2xdlyvq"; }; # Last one supporting x86 diff --git a/pkgs/os-specific/linux/nvidia-x11/generic.nix b/pkgs/os-specific/linux/nvidia-x11/generic.nix index 6f58e3e8f1d9..ed8c2a050955 100644 --- a/pkgs/os-specific/linux/nvidia-x11/generic.nix +++ b/pkgs/os-specific/linux/nvidia-x11/generic.nix @@ -41,7 +41,7 @@ let i686bundled = versionAtLeast version "391" && !disable32Bit; libPathFor = pkgs: pkgs.lib.makeLibraryPath [ pkgs.libdrm pkgs.xorg.libXext pkgs.xorg.libX11 - pkgs.xorg.libXv pkgs.xorg.libXrandr pkgs.xorg.libxcb pkgs.zlib pkgs.stdenv.cc.cc ]; + pkgs.xorg.libXv pkgs.xorg.libXrandr pkgs.xorg.libxcb pkgs.zlib pkgs.stdenv.cc.cc pkgs.wayland ]; self = stdenv.mkDerivation { name = "nvidia-x11-${version}${nameSuffix}"; diff --git a/pkgs/os-specific/linux/pax-utils/default.nix b/pkgs/os-specific/linux/pax-utils/default.nix index db5763029977..4bc5266cadc4 100644 --- a/pkgs/os-specific/linux/pax-utils/default.nix +++ b/pkgs/os-specific/linux/pax-utils/default.nix @@ -5,7 +5,7 @@ stdenv.mkDerivation rec { version = "1.3.3"; src = fetchurl { - url = "http://distfiles.gentoo.org/distfiles/${pname}-${version}.tar.xz"; + url = "mirror://gentoo/distfiles/${pname}-${version}.tar.xz"; sha256 = "sha256-7sp/vZi8Zr6tSncADCAl2fF+qCAbhCRYgkBs4AubaxQ="; }; diff --git a/pkgs/os-specific/linux/rtl8188eus-aircrack/default.nix b/pkgs/os-specific/linux/rtl8188eus-aircrack/default.nix index 100683ed37ba..f9f3ce47cb32 100644 --- a/pkgs/os-specific/linux/rtl8188eus-aircrack/default.nix +++ b/pkgs/os-specific/linux/rtl8188eus-aircrack/default.nix @@ -36,6 +36,6 @@ stdenv.mkDerivation { homepage = "https://github.com/aircrack-ng/rtl8188eus"; license = licenses.gpl2Only; maintainers = with maintainers; [ fortuneteller2k ]; - broken = kernel.isHardened; + broken = kernel.kernelAtLeast "5.15" || kernel.isHardened; }; } diff --git a/pkgs/os-specific/linux/rtl8192eu/default.nix b/pkgs/os-specific/linux/rtl8192eu/default.nix index b66a56a8f8bf..b33330611b88 100644 --- a/pkgs/os-specific/linux/rtl8192eu/default.nix +++ b/pkgs/os-specific/linux/rtl8192eu/default.nix @@ -6,13 +6,13 @@ let modDestDir = "$out/lib/modules/${kernel.modDirVersion}/kernel/drivers/net/wi in stdenv.mkDerivation rec { pname = "rtl8192eu"; - version = "${kernel.version}-4.4.1.20210403"; + version = "${kernel.version}-4.4.1.20211023"; src = fetchFromGitHub { owner = "Mange"; repo = "rtl8192eu-linux-driver"; - rev = "ab35c7e9672f37d75b7559758c99f6d027607687"; - sha256 = "sha256-sTIaye4oWNYEnNuXlrTLobaFKXzBLsfJXdJuc10EdJI="; + rev = "744bbe52976e51895fce2c1d4075f97a98dca2b2"; + sha256 = "1ayb3fljvpljwcgi47h8vj2d2w5imqyjxc7mvmfrvmilzg5d5cj7"; }; hardeningDisable = [ "pic" ]; diff --git a/pkgs/os-specific/linux/rtl8812au/default.nix b/pkgs/os-specific/linux/rtl8812au/default.nix index 7fa5ee42670d..1aab3e03cd95 100644 --- a/pkgs/os-specific/linux/rtl8812au/default.nix +++ b/pkgs/os-specific/linux/rtl8812au/default.nix @@ -50,6 +50,6 @@ stdenv.mkDerivation rec { license = licenses.gpl2Only; platforms = platforms.linux; maintainers = with maintainers; [ fortuneteller2k ]; - broken = kernel.kernelOlder "4.10" || kernel.isHardened; + broken = kernel.kernelOlder "4.10" || kernel.kernelAtLeast "5.15" || kernel.isHardened; }; } diff --git a/pkgs/os-specific/linux/rtl8814au/default.nix b/pkgs/os-specific/linux/rtl8814au/default.nix index f8c74f9d22e2..f9ca60b1112b 100644 --- a/pkgs/os-specific/linux/rtl8814au/default.nix +++ b/pkgs/os-specific/linux/rtl8814au/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation { pname = "rtl8814au"; - version = "${kernel.version}-unstable-2021-05-18"; + version = "${kernel.version}-unstable-2021-10-25"; src = fetchFromGitHub { owner = "morrownr"; repo = "8814au"; - rev = "388786c864f9b1437fc4d934b1eccf6d7f1e1355"; - sha256 = "sha256-2EnheODPFWTGN/fz45LWRSOGeV6pTENEUrehahj+PJ4="; + rev = "d36c0874716b0776ac6c7dcd6110598ef0f6dd53"; + sha256 = "0lk3ldff489ggbqmlfi4zvnp1cvxj1b06m0fhpzai82070klzzmj"; }; buildInputs = kernel.moduleBuildDependencies; diff --git a/pkgs/os-specific/linux/rtl8821au/default.nix b/pkgs/os-specific/linux/rtl8821au/default.nix index 1f7d07f7326d..5800405f2839 100644 --- a/pkgs/os-specific/linux/rtl8821au/default.nix +++ b/pkgs/os-specific/linux/rtl8821au/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "rtl8821au"; - version = "${kernel.version}-unstable-2021-05-18"; + version = "${kernel.version}-unstable-2021-11-05"; src = fetchFromGitHub { owner = "morrownr"; - repo = "8821au"; - rev = "6f6a9d5772bb2b75f18374c01c82c6b3e8e3244d"; - sha256 = "sha256-RqtLR3sNcLXhUrNloSTRKubL1SVwzbVe73AsBYYSXNE="; + repo = "8821au-20210708"; + rev = "dd9f442d86535fb749ab06f38f97160484d9f04b"; + sha256 = "0d90zd45b8934wxy51q1x39lx4n3i28zjm6jcq98wkm4lypgphxv"; }; nativeBuildInputs = [ bc nukeReferences ]; diff --git a/pkgs/os-specific/linux/rtl8821cu/default.nix b/pkgs/os-specific/linux/rtl8821cu/default.nix index 2ea555ff0b8a..9229a3c13069 100644 --- a/pkgs/os-specific/linux/rtl8821cu/default.nix +++ b/pkgs/os-specific/linux/rtl8821cu/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "rtl8821cu"; - version = "${kernel.version}-unstable-2021-05-19"; + version = "${kernel.version}-unstable-2021-10-21"; src = fetchFromGitHub { owner = "morrownr"; repo = "8821cu"; - rev = "2430c354c9b15fa6193a263c99ce57211d50c66f"; - sha256 = "sha256-PkrpwebZYh/hBukqDQf6pxfbkVyA+CpYtte5pmzgLtw="; + rev = "4e2d84c5e70245f850877f355e8bf293f252f61c"; + sha256 = "1j32psvfgzfs5b1pdff6xk76iz7j8scakji6zm3vgqb2ssbxx1k1"; }; hardeningDisable = [ "pic" ]; diff --git a/pkgs/os-specific/linux/rtl88x2bu/default.nix b/pkgs/os-specific/linux/rtl88x2bu/default.nix index cbd604b72ed1..310dac3933f1 100644 --- a/pkgs/os-specific/linux/rtl88x2bu/default.nix +++ b/pkgs/os-specific/linux/rtl88x2bu/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "rtl88x2bu"; - version = "${kernel.version}-unstable-2021-05-18"; + version = "${kernel.version}-unstable-2021-11-04"; src = fetchFromGitHub { owner = "morrownr"; repo = "88x2bu"; - rev = "80b03962e33f86f99e898305d8d597140503de03"; - sha256 = "sha256-C7XOpKgwxM9UbfW3wHteInTmAUM3FFqN1MHMKxP8gBA="; + rev = "745d134080b74b92389ffe59c03dcfd6658f8655"; + sha256 = "0f1hsfdw3ar78kqzr4hi04kpp5wnx0hd29f9rm698k0drxaw1g44"; }; hardeningDisable = [ "pic" ]; diff --git a/pkgs/os-specific/linux/rtl88xxau-aircrack/default.nix b/pkgs/os-specific/linux/rtl88xxau-aircrack/default.nix index 8d3340e16fb3..25dd61bc8a0b 100644 --- a/pkgs/os-specific/linux/rtl88xxau-aircrack/default.nix +++ b/pkgs/os-specific/linux/rtl88xxau-aircrack/default.nix @@ -1,7 +1,7 @@ -{ lib, stdenv, fetchFromGitHub, fetchpatch, kernel }: +{ lib, stdenv, fetchFromGitHub, kernel }: let - rev = "3a64331a1c809bbbc21eca63b825970f213ec5ac"; + rev = "307d694076b056588c652c2bdaa543a89eb255d9"; in stdenv.mkDerivation rec { pname = "rtl88xxau-aircrack"; @@ -11,7 +11,7 @@ stdenv.mkDerivation rec { owner = "aircrack-ng"; repo = "rtl8812au"; inherit rev; - sha256 = "sha256-goaN80imfCeUwiHokJd10CFKskE3iL5BO/xOQk6PtHE="; + sha256 = "sha256-iSJnKWc+LxGHUhb/wbFSMh7w6Oi9v4v5V+R+LI96X7w="; }; buildInputs = kernel.moduleBuildDependencies; @@ -20,14 +20,6 @@ stdenv.mkDerivation rec { NIX_CFLAGS_COMPILE="-Wno-error=incompatible-pointer-types"; - # Fix build for 5.12 kernels - patches = [ - (fetchpatch { - url = "https://github.com/aircrack-ng/rtl8812au/commit/9b4c60a89c2a55f36454b950a86246b6b86a9681.patch"; - sha256 = "sha256-HPhTLstqAePF3H6WeM9Fu4/8UjNL+9xl4L8xq3NOWuM="; - }) - ]; - prePatch = '' substituteInPlace ./Makefile \ --replace /lib/modules/ "${kernel.dev}/lib/modules/" \ diff --git a/pkgs/os-specific/linux/seturgent/default.nix b/pkgs/os-specific/linux/seturgent/default.nix index 2e9e445eddc5..da494f08ca2e 100644 --- a/pkgs/os-specific/linux/seturgent/default.nix +++ b/pkgs/os-specific/linux/seturgent/default.nix @@ -1,7 +1,8 @@ { lib, stdenv, fetchurl, libX11, xorgproto, unzip }: stdenv.mkDerivation { - name = "seturgent-2012-08-17"; + pname = "seturgent"; + version = "unstable-2012-08-17"; src = fetchurl { url = "https://github.com/hiltjo/seturgent/archive/ada70dcb15865391e5cdcab27a0739a304a17e03.zip"; @@ -10,7 +11,8 @@ stdenv.mkDerivation { nativeBuildInputs = [ unzip ]; buildInputs = [ - libX11 xorgproto + libX11 + xorgproto ]; installPhase = '' @@ -19,10 +21,10 @@ stdenv.mkDerivation { ''; meta = { - platforms = lib.platforms.linux; - description = "Set an application's urgency hint (or not)"; - maintainers = [ lib.maintainers.yarr ]; - homepage = "https://github.com/hiltjo/seturgent"; - license = lib.licenses.mit; + platforms = lib.platforms.linux; + description = "Set an application's urgency hint (or not)"; + maintainers = [ lib.maintainers.yarr ]; + homepage = "https://github.com/hiltjo/seturgent"; + license = lib.licenses.mit; }; } diff --git a/pkgs/os-specific/linux/sgx-sdk/default.nix b/pkgs/os-specific/linux/sgx-sdk/default.nix new file mode 100644 index 000000000000..130fd12cbb91 --- /dev/null +++ b/pkgs/os-specific/linux/sgx-sdk/default.nix @@ -0,0 +1,159 @@ +{ lib +, stdenv +, fetchpatch +, fetchurl +, fetchFromGitHub +, callPackage +, autoconf +, automake +, binutils +, cmake +, file +, git +, libtool +, nasm +, ncurses +, ocaml +, ocamlPackages +, openssl +, perl +, python3 +, texinfo +, which +, writeShellScript +}: + +stdenv.mkDerivation rec { + pname = "sgx-sdk"; + version = "2.14"; + + src = fetchFromGitHub { + owner = "intel"; + repo = "linux-sgx"; + rev = "0cea078f17a24fb807e706409972d77f7a958db9"; + sha256 = "1cr2mkk459s270ng0yddgcryi0zc3dfmg9rmdrdh9mhy2mc1kx0g"; + fetchSubmodules = true; + }; + + patches = [ + (fetchpatch { + name = "replace-bin-cp-with-cp.patch"; + url = "https://github.com/intel/linux-sgx/commit/e0db5291d46d1c124980719d63829d65f89cf2c7.patch"; + sha256 = "0xwlpm1r4rl4anfhjkr6fgz0gcyhr0ng46fv8iw9hfsh891yqb7z"; + }) + (fetchpatch { + name = "sgx_ippcp.h.patch"; + url = "https://github.com/intel/linux-sgx/commit/e5929083f8161a8e7404afc0577936003fbb9d0b.patch"; + sha256 = "12bgs9rxlq82hn5prl9qz2r4mwypink8hzdz4cki4k4cmkw961f5"; + }) + ]; + postPatch = '' + patchShebangs ./linux/installer/bin/build-installpkg.sh \ + ./linux/installer/common/sdk/createTarball.sh \ + ./linux/installer/common/sdk/install.sh + ''; + + dontConfigure = true; + + # SDK built with stackprotector produces broken enclaves which crash at runtime. + # Disable all to be safe, SDK build configures compiler mitigations manually. + hardeningDisable = [ "all" ]; + + nativeBuildInputs = [ + cmake + git + ocaml + ocamlPackages.ocamlbuild + perl + python3 + texinfo + nasm + file + ncurses + autoconf + automake + ]; + + buildInputs = [ + libtool + openssl + ]; + + BINUTILS_DIR = "${binutils}/bin"; + + # Build external/ippcp_internal first. The Makefile is rewritten to make the + # build faster by splitting different versions of ipp-crypto builds and to + # avoid patching the Makefile for reproducibility issues. + buildPhase = let + ipp-crypto-no_mitigation = callPackage (import ./ipp-crypto.nix) {}; + + sgx-asm-pp = "python ${src}/build-scripts/sgx-asm-pp.py --assembler=nasm"; + + nasm-load = writeShellScript "nasm-load" "${sgx-asm-pp} --MITIGATION-CVE-2020-0551=LOAD $@"; + ipp-crypto-cve_2020_0551_load = callPackage (import ./ipp-crypto.nix) { + extraCmakeFlags = [ "-DCMAKE_ASM_NASM_COMPILER=${nasm-load}" ]; + }; + + nasm-cf = writeShellScript "nasm-cf" "${sgx-asm-pp} --MITIGATION-CVE-2020-0551=CF $@"; + ipp-crypto-cve_2020_0551_cf = callPackage (import ./ipp-crypto.nix) { + extraCmakeFlags = [ "-DCMAKE_ASM_NASM_COMPILER=${nasm-cf}" ]; + }; + in '' + cd external/ippcp_internal + + mkdir -p lib/linux/intel64/no_mitigation + cp ${ipp-crypto-no_mitigation}/lib/intel64/libippcp.a lib/linux/intel64/no_mitigation + chmod a+w lib/linux/intel64/no_mitigation/libippcp.a + cp ${ipp-crypto-no_mitigation}/include/* ./inc + + mkdir -p lib/linux/intel64/cve_2020_0551_load + cp ${ipp-crypto-cve_2020_0551_load}/lib/intel64/libippcp.a lib/linux/intel64/cve_2020_0551_load + chmod a+w lib/linux/intel64/cve_2020_0551_load/libippcp.a + + mkdir -p lib/linux/intel64/cve_2020_0551_cf + cp ${ipp-crypto-cve_2020_0551_cf}/lib/intel64/libippcp.a lib/linux/intel64/cve_2020_0551_cf + chmod a+w lib/linux/intel64/cve_2020_0551_cf/libippcp.a + + rm -f ./inc/ippcp.h + patch ${ipp-crypto-no_mitigation}/include/ippcp.h -i ./inc/ippcp20u3.patch -o ./inc/ippcp.h + + mkdir -p license + cp ${ipp-crypto-no_mitigation.src}/LICENSE ./license + + # Build the SDK installation package. + cd ../.. + + # Nix patches make so that $(SHELL) defaults to "sh" instead of "/bin/sh". + # The build uses $(SHELL) as an argument to file -L which requires a path. + make SHELL=$SHELL sdk_install_pkg + + runHook postBuild + ''; + + postBuild = '' + patchShebangs ./linux/installer/bin/sgx_linux_x64_sdk_*.bin + ''; + + installPhase = '' + echo -e 'no\n'$out | ./linux/installer/bin/sgx_linux_x64_sdk_*.bin + ''; + + dontFixup = true; + + doInstallCheck = true; + installCheckInputs = [ which ]; + installCheckPhase = '' + source $out/sgxsdk/environment + cd SampleCode/SampleEnclave + make SGX_MODE=SGX_SIM + ./app + ''; + + meta = with lib; { + description = "Intel SGX SDK for Linux built with IPP Crypto Library"; + homepage = "https://github.com/intel/linux-sgx"; + maintainers = with maintainers; [ sbellem arturcygan ]; + platforms = [ "x86_64-linux" ]; + license = with licenses; [ bsd3 ]; + }; +} diff --git a/pkgs/os-specific/linux/sgx-sdk/ipp-crypto.nix b/pkgs/os-specific/linux/sgx-sdk/ipp-crypto.nix new file mode 100644 index 000000000000..52cef4f82815 --- /dev/null +++ b/pkgs/os-specific/linux/sgx-sdk/ipp-crypto.nix @@ -0,0 +1,24 @@ +{ lib +, stdenv +, fetchFromGitHub +, cmake +, python3 +, nasm +, extraCmakeFlags ? [] +}: + +stdenv.mkDerivation rec { + pname = "ipp-crypto"; + version = "2020_update3"; + + src = fetchFromGitHub { + owner = "intel"; + repo = "ipp-crypto"; + rev = "ipp-crypto_${version}"; + sha256 = "02vlda6mlhbd12ljzdf65klpx4kmx1ylch9w3yllsiya4hwqzy4b"; + }; + + cmakeFlags = [ "-DARCH=intel64" ] ++ extraCmakeFlags; + + nativeBuildInputs = [ cmake python3 nasm ]; +} diff --git a/pkgs/os-specific/linux/smemstat/default.nix b/pkgs/os-specific/linux/smemstat/default.nix index 1510981c1767..f95532ada3c4 100644 --- a/pkgs/os-specific/linux/smemstat/default.nix +++ b/pkgs/os-specific/linux/smemstat/default.nix @@ -1,4 +1,4 @@ -{ stdenv, lib, fetchurl, ncurses }: +{ stdenv, lib, fetchurl, fetchpatch, ncurses }: stdenv.mkDerivation rec { pname = "smemstat"; @@ -7,6 +7,15 @@ stdenv.mkDerivation rec { url = "https://kernel.ubuntu.com/~cking/tarballs/smemstat/smemstat-${version}.tar.xz"; sha256 = "sha256-Vrs1jOg5yHdEffVo769aaxSawo4iZtGrFJ65Nu+RhcU="; }; + patches = [ + # Pull patch pending upstream inclusion to support ncurses-6.3: + # https://github.com/ColinIanKing/smemstat/pull/1 + (fetchpatch { + name = "ncurses-6.3.patch"; + url = "https://github.com/ColinIanKing/smemstat/commit/95119558d1679295c9f9f7f618ddbe212674a4bf.patch"; + sha256 = "sha256-Cl3Y0HIy1nXqBux6+AXoPuKJatSv3Z0X/4bD+MNjkAQ="; + }) + ]; buildInputs = [ ncurses ]; installFlags = [ "DESTDIR=$(out)" ]; postInstall = '' @@ -15,7 +24,7 @@ stdenv.mkDerivation rec { ''; meta = with lib; { description = "Memory usage monitoring tool"; - homepage = "https://kernel.ubuntu.com/~cking/smemstat/"; + homepage = "https://github.com/ColinIanKing/smemstat"; license = licenses.gpl2; platforms = platforms.linux; maintainers = with maintainers; [ womfoo ]; diff --git a/pkgs/os-specific/linux/udisks-glue/default.nix b/pkgs/os-specific/linux/udisks-glue/default.nix index 453df94f8fb5..e51a2b1990c3 100644 --- a/pkgs/os-specific/linux/udisks-glue/default.nix +++ b/pkgs/os-specific/linux/udisks-glue/default.nix @@ -1,10 +1,11 @@ { lib, stdenv, fetchurl, pkg-config, automake, autoconf, udisks1, dbus-glib, glib, libconfuse }: -stdenv.mkDerivation { - name = "udisks-glue-1.3.5"; +stdenv.mkDerivation rec { + pname = "udisks-glue"; + version = "1.3.5"; src = fetchurl { - url = "https://github.com/fernandotcl/udisks-glue/archive/release-1.3.5.tar.gz"; + url = "https://github.com/fernandotcl/udisks-glue/archive/release-${version}.tar.gz"; sha256 = "317d25bf249278dc8f6a5dcf18f760512427c772b9afe3cfe34e6e1baa258176"; }; @@ -17,9 +18,9 @@ stdenv.mkDerivation { homepage = "https://github.com/fernandotcl/udisks-glue"; description = "A tool to associate udisks events to user-defined actions"; platforms = lib.platforms.linux; - maintainers = with lib.maintainers; [pSub]; + maintainers = with lib.maintainers; [ pSub ]; license = lib.licenses.bsd2; broken = true; - hydraPlatforms = []; + hydraPlatforms = [ ]; }; } diff --git a/pkgs/os-specific/linux/udisks/1-default.nix b/pkgs/os-specific/linux/udisks/1-default.nix index f20dc6b60765..87da3a29d6c0 100644 --- a/pkgs/os-specific/linux/udisks/1-default.nix +++ b/pkgs/os-specific/linux/udisks/1-default.nix @@ -1,12 +1,31 @@ -{ lib, stdenv, fetchurl, pkg-config, sg3_utils, udev, glib, dbus, dbus-glib -, polkit, parted, lvm2, libatasmart, intltool, libuuid, mdadm -, libxslt, docbook_xsl, util-linux, libgudev }: +{ lib +, stdenv +, fetchurl +, pkg-config +, sg3_utils +, udev +, glib +, dbus +, dbus-glib +, polkit +, parted +, lvm2 +, libatasmart +, intltool +, libuuid +, mdadm +, libxslt +, docbook_xsl +, util-linux +, libgudev +}: stdenv.mkDerivation rec { - name = "udisks-1.0.5"; + pname = "udisks"; + version = "1.0.5"; src = fetchurl { - url = "https://hal.freedesktop.org/releases/${name}.tar.gz"; + url = "https://hal.freedesktop.org/releases/udisks-${version}.tar.gz"; sha256 = "0wbg3jrv8limdgvcygf4dqin3y6d30y9pcmmk711vq571vmq5v7j"; }; @@ -27,8 +46,21 @@ stdenv.mkDerivation rec { ''; buildInputs = - [ sg3_utils udev glib dbus dbus-glib polkit parted libgudev - lvm2 libatasmart intltool libuuid libxslt docbook_xsl + [ + sg3_utils + udev + glib + dbus + dbus-glib + polkit + parted + libgudev + lvm2 + libatasmart + intltool + libuuid + libxslt + docbook_xsl ]; nativeBuildInputs = [ pkg-config ]; @@ -41,6 +73,6 @@ stdenv.mkDerivation rec { platforms = platforms.linux; license = with licenses; [ gpl2 lgpl2Plus ]; broken = true; - hydraPlatforms = []; + hydraPlatforms = [ ]; }; } diff --git a/pkgs/os-specific/linux/waydroid/default.nix b/pkgs/os-specific/linux/waydroid/default.nix index 708237e5184c..1390077a60d1 100644 --- a/pkgs/os-specific/linux/waydroid/default.nix +++ b/pkgs/os-specific/linux/waydroid/default.nix @@ -3,24 +3,31 @@ , fetchFromGitHub , python3Packages , dnsmasq +, getent +, kmod , lxc +, iproute2 +, iptables , nftables -, python +, util-linux +, which +, xclip }: python3Packages.buildPythonApplication rec { pname = "waydroid"; - version = "1.1.1"; + version = "1.2.0"; src = fetchFromGitHub { owner = pname; repo = pname; rev = version; - sha256 = "0cabh7rysh2v15wrxg250370mw26s5d073yxmczxsarbp4ri2pl4"; + sha256 = "03d87sh443kn0j2mpih1g909khkx3wgb04h605f9jhd0znskkbmw"; }; propagatedBuildInputs = with python3Packages; [ gbinder-python + pyclip pygobject3 ]; @@ -36,20 +43,33 @@ python3Packages.buildPythonApplication rec { cp -ra data $out/${python3Packages.python.sitePackages}/data wrapProgram $out/${python3Packages.python.sitePackages}/data/scripts/waydroid-net.sh \ - --prefix PATH ":" ${lib.makeBinPath [ dnsmasq nftables ]} + --prefix PATH ":" ${lib.makeBinPath [ dnsmasq getent iproute2 iptables nftables ]} mkdir -p $out/share/waydroid/gbinder.d cp gbinder/anbox.conf $out/share/waydroid/gbinder.d/anbox.conf + mkdir -p $out/share/applications + ln -s $out/${python3Packages.python.sitePackages}/data/Waydroid.desktop $out/share/applications/Waydroid.desktop + mkdir $out/bin cp -a waydroid.py $out/${python3Packages.python.sitePackages}/waydroid.py ln -s $out/${python3Packages.python.sitePackages}/waydroid.py $out/bin/waydroid - wrapPythonProgramsIn $out/${python3Packages.python.sitePackages} "$out ${python3Packages.gbinder-python} ${python3Packages.pygobject3} ${lxc}" + wrapPythonProgramsIn $out/${python3Packages.python.sitePackages} "${lib.concatStringsSep " " [ + "$out" + python3Packages.gbinder-python + python3Packages.pygobject3 + python3Packages.pyclip + kmod + lxc + util-linux + which + xclip + ]}" ''; meta = with lib; { - description = "Waydroid is a container-based approach to boot a full Android system on a regular GNU/Linux system like Ubuntu."; + description = "Waydroid is a container-based approach to boot a full Android system on a regular GNU/Linux system like Ubuntu"; homepage = "https://github.com/waydroid/waydroid"; license = licenses.gpl3; platforms = platforms.linux; diff --git a/pkgs/os-specific/linux/xmm7360-pci/default.nix b/pkgs/os-specific/linux/xmm7360-pci/default.nix index 221bde981b65..6a589ff889c3 100644 --- a/pkgs/os-specific/linux/xmm7360-pci/default.nix +++ b/pkgs/os-specific/linux/xmm7360-pci/default.nix @@ -24,6 +24,6 @@ stdenv.mkDerivation rec { license = licenses.isc; maintainers = with maintainers; [ flokli hexa ]; platforms = platforms.linux; - broken = kernel.kernelAtLeast "5.14"; + broken = kernel.kernelOlder "4.10" || kernel.kernelAtLeast "5.14"; }; } diff --git a/pkgs/os-specific/windows/jom/default.nix b/pkgs/os-specific/windows/jom/default.nix index f3a953576ec9..dfd3f3ff19c3 100644 --- a/pkgs/os-specific/windows/jom/default.nix +++ b/pkgs/os-specific/windows/jom/default.nix @@ -4,7 +4,8 @@ # both mingw32 and mingw64. stdenv.mkDerivation { - name = "jom-1.0.11"; + pname = "jom"; + version = "1.0.11"; src = fetchgit { url = "git://gitorious.org/qt-labs/jom.git"; diff --git a/pkgs/os-specific/windows/mingw-w64/pthreads.nix b/pkgs/os-specific/windows/mingw-w64/pthreads.nix index bbcb028d3cbb..3b143efed1d7 100644 --- a/pkgs/os-specific/windows/mingw-w64/pthreads.nix +++ b/pkgs/os-specific/windows/mingw-w64/pthreads.nix @@ -4,6 +4,12 @@ stdenv.mkDerivation { name = "${mingw_w64.name}-pthreads"; inherit (mingw_w64) src meta; + configureFlags = [ + # Rustc require 'libpthread.a' when targeting 'x86_64-pc-windows-gnu'. + # Enabling this makes it work out of the box instead of failing. + "--enable-static" + ]; + preConfigure = '' cd mingw-w64-libraries/winpthreads ''; diff --git a/pkgs/os-specific/windows/mingwrt/default.nix b/pkgs/os-specific/windows/mingwrt/default.nix index 4fb92569a47a..5bf6951cd434 100644 --- a/pkgs/os-specific/windows/mingwrt/default.nix +++ b/pkgs/os-specific/windows/mingwrt/default.nix @@ -1,10 +1,11 @@ { stdenv, lib, fetchurl }: stdenv.mkDerivation rec { - name = "mingwrt-5.0.2"; + pname = "mingwrt"; + version = "5.0.2"; src = fetchurl { - url = "mirror://sourceforge/mingw/MinGW/Base/mingwrt/${name}/${name}-mingw32-src.tar.xz"; + url = "mirror://sourceforge/mingw/MinGW/Base/mingwrt/mingwrt-${version}/mingwrt-${version}-mingw32-src.tar.xz"; sha256 = "1vj6f578wcffdmy7zzf7xz1lw57kxjy08j0k1n28f0j4ylrk68vp"; }; diff --git a/pkgs/os-specific/windows/w32api/default.nix b/pkgs/os-specific/windows/w32api/default.nix index ebc95ecaa7a9..99faeeb7a8bf 100644 --- a/pkgs/os-specific/windows/w32api/default.nix +++ b/pkgs/os-specific/windows/w32api/default.nix @@ -1,10 +1,11 @@ { stdenv, fetchurl, lib }: stdenv.mkDerivation rec { - name = "w32api-3.17-2"; + pname = "w32api"; + version = "3.17-2"; src = fetchurl { - url = "mirror://sourceforge/mingw/MinGW/Base/w32api/w32api-3.17/${name}-mingw32-src.tar.lzma"; + url = "mirror://sourceforge/mingw/MinGW/Base/w32api/w32api-${lib.versions.majorMinor version}/w32api-${version}-mingw32-src.tar.lzma"; sha256 = "09rhnl6zikmdyb960im55jck0rdy5z9nlg3akx68ixn7khf3j8wb"; }; diff --git a/pkgs/os-specific/windows/wxMSW-2.8/default.nix b/pkgs/os-specific/windows/wxMSW-2.8/default.nix index c4fb79933432..bf1e73f67b9a 100644 --- a/pkgs/os-specific/windows/wxMSW-2.8/default.nix +++ b/pkgs/os-specific/windows/wxMSW-2.8/default.nix @@ -1,10 +1,11 @@ { lib, stdenv, fetchurl, compat24 ? false, compat26 ? true, unicode ? true }: -stdenv.mkDerivation { - name = "wxMSW-2.8.11"; +stdenv.mkDerivation rec { + pname = "wxMSW"; + version = "2.8.11"; src = fetchurl { - url = "mirror://sourceforge/wxwindows/wxWidgets-2.8.11.tar.gz"; + url = "mirror://sourceforge/wxwindows/wxWidgets-${version}.tar.gz"; sha256 = "0icxd21g18d42n1ygshkpw0jnflm03iqki6r623pb5hhd7fm2ksj"; }; @@ -27,7 +28,7 @@ stdenv.mkDerivation { (cd $out/include && ln -s wx-*/* .) "; - passthru = {inherit compat24 compat26 unicode;}; + passthru = { inherit compat24 compat26 unicode; }; meta = { platforms = lib.platforms.windows; diff --git a/pkgs/servers/antennas/default.nix b/pkgs/servers/antennas/default.nix new file mode 100644 index 000000000000..ae0e22e0f21c --- /dev/null +++ b/pkgs/servers/antennas/default.nix @@ -0,0 +1,34 @@ +{ lib, mkYarnPackage, fetchFromGitHub, nodejs }: + +mkYarnPackage rec { + pname = "antennas"; + version = "unstable-2021-01-21"; + + src = fetchFromGitHub { + owner = "TheJF"; + repo = "antennas"; + rev = "5e1f7375004001255e3daef7d48f45af321c7a52"; + sha256 = "0bahn4y0chk70x822nn32ya7kmn9x15jb80xa544y501x1s7w981"; + }; + + preFixup = '' + mkdir -p $out/bin + chmod a+x $out/libexec/antennas/deps/antennas/index.js + sed -i '1i#!${nodejs}/bin/node' $out/libexec/antennas/deps/antennas/index.js + ln -s $out/libexec/antennas/deps/antennas/index.js $out/bin/antennas + ''; + + # The --production flag disables the devDependencies. + yarnFlags = [ "--offline" "--production" ]; + yarnLock = ./yarn.lock; + packageJSON = ./package.json; + yarnNix = ./yarn.nix; + + meta = with lib; { + description = "HDHomeRun emulator for Plex DVR to connect to Tvheadend. "; + homepage = "https://github.com/TheJF/antennas"; + license = licenses.mit; + maintainers = with maintainers; [ bachp ]; + platforms = platforms.unix; + }; +} diff --git a/pkgs/servers/antennas/package.json b/pkgs/servers/antennas/package.json new file mode 100644 index 000000000000..1caca745c917 --- /dev/null +++ b/pkgs/servers/antennas/package.json @@ -0,0 +1,20 @@ +{ + "name": "antennas", + "version": "3.1.0", + "description": "HDHomeRun emulator for Plex DVR to connect to Tvheadend.", + "main": "index.js", + "repository": "https://github.com/thejf/antennas", + "author": "Jean-Francois Arseneau", + "license": "MIT", + "dependencies": { + "js-yaml": "^3.13.1", + "koa": "^2.5.0", + "koa-logger": "^3.2.0", + "koa-request": "^1.0.0", + "koa-router": "^7.4.0", + "koa-static": "^4.0.2", + "node-ssdp": "^3.3.0", + "request": "^2.85.0", + "request-promise-native": "^1.0.5" + } +} diff --git a/pkgs/servers/antennas/yarn.lock b/pkgs/servers/antennas/yarn.lock new file mode 100644 index 000000000000..587d9dbe9d79 --- /dev/null +++ b/pkgs/servers/antennas/yarn.lock @@ -0,0 +1,703 @@ +# THIS IS AN AUTOGENERATED FILE. DO NOT EDIT THIS FILE DIRECTLY. +# yarn lockfile v1 + + +accepts@^1.2.2: + version "1.3.5" + resolved "https://registry.yarnpkg.com/accepts/-/accepts-1.3.5.tgz#eb777df6011723a3b14e8a72c0805c8e86746bd2" + dependencies: + mime-types "~2.1.18" + negotiator "0.6.1" + +ajv@^5.1.0: + version "5.5.2" + resolved "https://registry.yarnpkg.com/ajv/-/ajv-5.5.2.tgz#73b5eeca3fab653e3d3f9422b341ad42205dc965" + dependencies: + co "^4.6.0" + fast-deep-equal "^1.0.0" + fast-json-stable-stringify "^2.0.0" + json-schema-traverse "^0.3.0" + +ansi-regex@^2.0.0: + version "2.1.1" + resolved "https://registry.yarnpkg.com/ansi-regex/-/ansi-regex-2.1.1.tgz#c3b33ab5ee360d86e0e628f0468ae7ef27d654df" + +ansi-styles@^2.2.1: + version "2.2.1" + resolved "https://registry.yarnpkg.com/ansi-styles/-/ansi-styles-2.2.1.tgz#b432dd3358b634cf75e1e4664368240533c1ddbe" + +any-promise@^1.0.0, any-promise@^1.1.0: + version "1.3.0" + resolved "https://registry.yarnpkg.com/any-promise/-/any-promise-1.3.0.tgz#abc6afeedcea52e809cdc0376aed3ce39635d17f" + +argparse@^1.0.7: + version "1.0.10" + resolved "https://registry.yarnpkg.com/argparse/-/argparse-1.0.10.tgz#bcd6791ea5ae09725e17e5ad988134cd40b3d911" + dependencies: + sprintf-js "~1.0.2" + +asn1@~0.2.3: + version "0.2.3" + resolved "https://registry.yarnpkg.com/asn1/-/asn1-0.2.3.tgz#dac8787713c9966849fc8180777ebe9c1ddf3b86" + +assert-plus@1.0.0, assert-plus@^1.0.0: + version "1.0.0" + resolved "https://registry.yarnpkg.com/assert-plus/-/assert-plus-1.0.0.tgz#f12e0f3c5d77b0b1cdd9146942e4e96c1e4dd525" + +async@^2.6.0: + version "2.6.0" + resolved "https://registry.yarnpkg.com/async/-/async-2.6.0.tgz#61a29abb6fcc026fea77e56d1c6ec53a795951f4" + dependencies: + lodash "^4.14.0" + +asynckit@^0.4.0: + version "0.4.0" + resolved "https://registry.yarnpkg.com/asynckit/-/asynckit-0.4.0.tgz#c79ed97f7f34cb8f2ba1bc9790bcc366474b4b79" + +aws-sign2@~0.7.0: + version "0.7.0" + resolved "https://registry.yarnpkg.com/aws-sign2/-/aws-sign2-0.7.0.tgz#b46e890934a9591f2d2f6f86d7e6a9f1b3fe76a8" + +aws4@^1.6.0: + version "1.7.0" + resolved "https://registry.yarnpkg.com/aws4/-/aws4-1.7.0.tgz#d4d0e9b9dbfca77bf08eeb0a8a471550fe39e289" + +bcrypt-pbkdf@^1.0.0: + version "1.0.1" + resolved "https://registry.yarnpkg.com/bcrypt-pbkdf/-/bcrypt-pbkdf-1.0.1.tgz#63bc5dcb61331b92bc05fd528953c33462a06f8d" + dependencies: + tweetnacl "^0.14.3" + +bluebird@^3.5.1: + version "3.5.1" + resolved "https://registry.yarnpkg.com/bluebird/-/bluebird-3.5.1.tgz#d9551f9de98f1fcda1e683d17ee91a0602ee2eb9" + +boom@4.x.x: + version "4.3.1" + resolved "https://registry.yarnpkg.com/boom/-/boom-4.3.1.tgz#4f8a3005cb4a7e3889f749030fd25b96e01d2e31" + dependencies: + hoek "4.x.x" + +boom@5.x.x: + version "5.2.0" + resolved "https://registry.yarnpkg.com/boom/-/boom-5.2.0.tgz#5dd9da6ee3a5f302077436290cb717d3f4a54e02" + dependencies: + hoek "4.x.x" + +bytes@^2.5.0: + version "2.5.0" + resolved "https://registry.yarnpkg.com/bytes/-/bytes-2.5.0.tgz#4c9423ea2d252c270c41b2bdefeff9bb6b62c06a" + +caseless@~0.12.0: + version "0.12.0" + resolved "https://registry.yarnpkg.com/caseless/-/caseless-0.12.0.tgz#1b681c21ff84033c826543090689420d187151dc" + +chalk@^1.1.3: + version "1.1.3" + resolved "https://registry.yarnpkg.com/chalk/-/chalk-1.1.3.tgz#a8115c55e4a702fe4d150abd3872822a7e09fc98" + dependencies: + ansi-styles "^2.2.1" + escape-string-regexp "^1.0.2" + has-ansi "^2.0.0" + strip-ansi "^3.0.0" + supports-color "^2.0.0" + +co@^4.6.0: + version "4.6.0" + resolved "https://registry.yarnpkg.com/co/-/co-4.6.0.tgz#6ea6bdf3d853ae54ccb8e47bfa0bf3f9031fb184" + +combined-stream@1.0.6, combined-stream@~1.0.5: + version "1.0.6" + resolved "https://registry.yarnpkg.com/combined-stream/-/combined-stream-1.0.6.tgz#723e7df6e801ac5613113a7e445a9b69cb632818" + dependencies: + delayed-stream "~1.0.0" + +content-disposition@~0.5.0: + version "0.5.2" + resolved 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+ }; + } + { + name = "tweetnacl___tweetnacl_0.14.5.tgz"; + path = fetchurl { + name = "tweetnacl___tweetnacl_0.14.5.tgz"; + url = "https://registry.yarnpkg.com/tweetnacl/-/tweetnacl-0.14.5.tgz"; + sha1 = "5ae68177f192d4456269d108afa93ff8743f4f64"; + }; + } + { + name = "type_is___type_is_1.6.16.tgz"; + path = fetchurl { + name = "type_is___type_is_1.6.16.tgz"; + url = "https://registry.yarnpkg.com/type-is/-/type-is-1.6.16.tgz"; + sha1 = "f89ce341541c672b25ee7ae3c73dee3b2be50194"; + }; + } + { + name = "urijs___urijs_1.19.1.tgz"; + path = fetchurl { + name = "urijs___urijs_1.19.1.tgz"; + url = "https://registry.yarnpkg.com/urijs/-/urijs-1.19.1.tgz"; + sha1 = "5b0ff530c0cbde8386f6342235ba5ca6e995d25a"; + }; + } + { + name = "uuid___uuid_3.2.1.tgz"; + path = fetchurl { + name = "uuid___uuid_3.2.1.tgz"; + url = "https://registry.yarnpkg.com/uuid/-/uuid-3.2.1.tgz"; + sha1 = "12c528bb9d58d0b9265d9a2f6f0fe8be17ff1f14"; + }; + } + { + name = "vary___vary_1.1.2.tgz"; + path = fetchurl { + name = "vary___vary_1.1.2.tgz"; + url = "https://registry.yarnpkg.com/vary/-/vary-1.1.2.tgz"; + sha1 = "2299f02c6ded30d4a5961b0b9f74524a18f634fc"; + }; + } + { + name = "verror___verror_1.10.0.tgz"; + path = fetchurl { + name = "verror___verror_1.10.0.tgz"; + url = "https://registry.yarnpkg.com/verror/-/verror-1.10.0.tgz"; + sha1 = "3a105ca17053af55d6e270c1f8288682e18da400"; + }; + } + ]; +} diff --git a/pkgs/servers/asterisk/default.nix b/pkgs/servers/asterisk/default.nix index e8912f4b5374..dddc7f42d884 100644 --- a/pkgs/servers/asterisk/default.nix +++ b/pkgs/servers/asterisk/default.nix @@ -97,7 +97,7 @@ let "externals_cache/pjproject-2.10.tar.bz2" = pjproject_2_10; "addons/mp3" = mp3-202; }; - }) (builtins.fromJSON (builtins.readFile ./versions.json)); + }) (lib.importJSON ./versions.json); in { # Supported releases (as of 2020-10-26). diff --git a/pkgs/servers/caddy/default.nix b/pkgs/servers/caddy/default.nix index 2b159cf8c875..50c95c8f8da1 100644 --- a/pkgs/servers/caddy/default.nix +++ b/pkgs/servers/caddy/default.nix @@ -2,7 +2,7 @@ buildGoModule rec { pname = "caddy"; - version = "2.4.5"; + version = "2.4.6"; subPackages = [ "cmd/caddy" ]; @@ -10,10 +10,10 @@ buildGoModule rec { owner = "caddyserver"; repo = pname; rev = "v${version}"; - sha256 = "sha256-/DZnIXAvhCaXFl4DvYP4LSFQQytzj6HWYsmqx5T8GNM="; + sha256 = "sha256-xNCxzoNpXkj8WF9+kYJfO18ux8/OhxygkGjA49+Q4vY="; }; - vendorSha256 = "sha256-ZevSZ8zTGtkrrJF0xvAtxCgP0CsxcORqD40LkMQ0aWc="; + vendorSha256 = "sha256-NomgHqIiugSISbEtvIbJDn5GRn6Dn72adLPkAvLbUQU="; passthru.tests = { inherit (nixosTests) caddy; }; diff --git a/pkgs/servers/code-server/darwin-fsevents.patch b/pkgs/servers/code-server/darwin-fsevents.patch deleted file mode 100644 index ec8fc68d5f67..000000000000 --- a/pkgs/servers/code-server/darwin-fsevents.patch +++ /dev/null @@ -1,11 +0,0 @@ ---- ./lib/vscode/node_modules/fsevents/install.js -+++ ./lib/vscode/node_modules/fsevents/install.js -@@ -1,7 +1,3 @@ - if (process.platform === 'darwin') { -- var spawn = require('child_process').spawn; -- var args = ['install', '--fallback-to-build']; -- var options = {stdio: 'inherit'}; -- var child = spawn(require.resolve('node-pre-gyp/bin/node-pre-gyp'), args, options); -- child.on('close', process.exit); -+ process.stdout.write('fsevents disabled on Darwin by Nix build script\n') - } diff --git a/pkgs/servers/code-server/default.nix b/pkgs/servers/code-server/default.nix index 039f0578569b..d6e39f8cdb1f 100644 --- a/pkgs/servers/code-server/default.nix +++ b/pkgs/servers/code-server/default.nix @@ -1,6 +1,6 @@ { lib, stdenv, fetchFromGitHub, buildGoModule, makeWrapper, runCommand -, moreutils, jq, git, zip, rsync, pkg-config, yarn, python3 -, nodejs-14_x, libsecret, xorg, ripgrep +, moreutils, jq, git, cacert, zip, rsync, pkg-config, yarn, python3 +, esbuild, nodejs-14_x, libsecret, xorg, ripgrep , AppKit, Cocoa, Security, cctools }: let @@ -13,25 +13,25 @@ let in stdenv.mkDerivation rec { pname = "code-server"; - version = "3.9.0"; - commit = "fc6d123da59a4e5a675ac8e080f66e032ba01a1b"; + version = "3.12.0"; + commit = "798dc0baf284416dbbf951e4ef596beeab6cb6c4"; src = fetchFromGitHub { owner = "cdr"; repo = "code-server"; rev = "v${version}"; - sha256 = "0jgmf8d7hki1iv6yy1z0s5qjyxchxnwj8kv53jrwkllim08swbi3"; + sha256 = "17v3sz0wjrmikmzyh9xswr4kf1vcj9njlibqb4wwj0pq0d72wdvl"; }; cloudAgent = buildGoModule rec { pname = "cloud-agent"; - version = "0.2.1"; + version = "0.2.3"; src = fetchFromGitHub { owner = "cdr"; repo = "cloud-agent"; rev = "v${version}"; - sha256 = "06fpiwxjz2cgzw4ks9sk3376rprkd02khfnb10hg7dhn3y9gp7x8"; + sha256 = "14i1qq273f0yn5v52ryiqwj7izkd1yd212di4gh4bqypmmzhw3jj"; }; vendorSha256 = "0k9v10wkzx53r5syf6bmm81gr4s5dalyaa07y9zvx6vv5r2h0661"; @@ -46,9 +46,12 @@ in stdenv.mkDerivation rec { yarnCache = stdenv.mkDerivation { name = "${pname}-${version}-${system}-yarn-cache"; inherit src; - nativeBuildInputs = [ yarn' git ]; + nativeBuildInputs = [ yarn' git cacert ]; buildPhase = '' export HOME=$PWD + export GIT_SSL_CAINFO="${cacert}/etc/ssl/certs/ca-bundle.crt" + + yarn --cwd "./vendor" install --modules-folder modules --ignore-scripts --frozen-lockfile yarn config set yarn-offline-mirror $out find "$PWD" -name "yarn.lock" -printf "%h\n" | \ @@ -61,9 +64,9 @@ in stdenv.mkDerivation rec { # to get hash values use nix-build -A code-server.prefetchYarnCache outputHash = { - x86_64-linux = "01nkqcfvx2qw9g60h8k9x221ibv3j58vdkjzcjnj7ph54a33ifih"; - aarch64-linux = "01nkqcfvx2qw9g60h8k9x221ibv3j58vdkjzcjnj7ph54a33ifih"; - x86_64-darwin = "01nkqcfvx2qw9g60h8k9x221ibv3j58vdkjzcjnj7ph54a33ifih"; + x86_64-linux = "1clfdl9hy5j2dj6jj6a9vgq0wzllfj0h2hbb73959k3w85y4ad2w"; + aarch64-linux = "1clfdl9hy5j2dj6jj6a9vgq0wzllfj0h2hbb73959k3w85y4ad2w"; + x86_64-darwin = "1clfdl9hy5j2dj6jj6a9vgq0wzllfj0h2hbb73959k3w85y4ad2w"; }.${system} or (throw "Unsupported system ${system}"); }; @@ -93,38 +96,9 @@ in stdenv.mkDerivation rec { patchShebangs ./ci - # remove unnecessary git config command - substituteInPlace lib/vscode/build/npm/postinstall.js \ - --replace "cp.execSync('git config pull.rebase true');" "" - - # allow offline install for postinstall scripts in extensions - grep -rl "yarn install" --include package.json lib/vscode/extensions \ - | xargs sed -i 's/yarn install/yarn install --offline/g' - - substituteInPlace ci/dev/postinstall.sh \ - --replace 'yarn' 'yarn --ignore-scripts' - - # use offline cache when installing release packages - substituteInPlace ci/build/npm-postinstall.sh \ - --replace 'yarn --production' 'yarn --production --offline' - - # disable automatic updates - sed -i '/update.mode/,/\}/{s/default:.*/default: "none",/g}' \ - lib/vscode/src/vs/platform/update/common/update.config.contribution.ts - # inject git commit substituteInPlace ci/build/build-release.sh \ --replace '$(git rev-parse HEAD)' "$commit" - - # remove all built-in extensions, as these are 3rd party extensions that - # gets downloaded from vscode marketplace - jq --slurp '.[0] * .[1]' "lib/vscode/product.json" <( - cat << EOF - { - "builtInExtensions": [] - } - EOF - ) | sponge lib/vscode/product.json ''; configurePhase = '' @@ -140,6 +114,7 @@ in stdenv.mkDerivation rec { yarn --offline config set yarn-offline-mirror "${yarnCache}" # link coder-cloud agent from nix store + mkdir -p lib ln -s "${cloudAgent}/bin/cloud-agent" ./lib/coder-cloud-agent # skip unnecessary electron download @@ -151,40 +126,80 @@ in stdenv.mkDerivation rec { buildPhase = '' # install code-server dependencies - yarn --offline + yarn --offline --ignore-scripts - # install vscode dependencies without running script for all vscode packages - # that require patching for postinstall scripts to succeed - for d in lib/vscode lib/vscode/build; do - yarn --offline --cwd $d --offline --ignore-scripts - done + # patch shebangs of everything to allow binary packages to build + patchShebangs . + + # Skip shellcheck download + jq "del(.scripts.preinstall)" node_modules/shellcheck/package.json | sponge node_modules/shellcheck/package.json + + # rebuild binary packages now that scripts have been patched + npm rebuild + + # Replicate ci/dev/postinstall.sh + echo "----- Replicate ci/dev/postinstall.sh" + yarn --cwd "./vendor" install --modules-folder modules --offline --ignore-scripts --frozen-lockfile + + # Replicate vendor/postinstall.sh + echo " ----- Replicate vendor/postinstall.sh" + yarn --cwd "./vendor/modules/code-oss-dev" --offline --frozen-lockfile --ignore-scripts install + + # remove all built-in extensions, as these are 3rd party extensions that + # get downloaded from vscode marketplace + jq --slurp '.[0] * .[1]' "vendor/modules/code-oss-dev/product.json" <( + cat << EOF + { + "builtInExtensions": [] + } + EOF + ) | sponge vendor/modules/code-oss-dev/product.json + + # disable automatic updates + sed -i '/update.mode/,/\}/{s/default:.*/default: "none",/g}' \ + vendor/modules/code-oss-dev/src/vs/platform/update/common/update.config.contribution.ts # put ripgrep binary into bin, so postinstall does not try to download it find -name vscode-ripgrep -type d \ -execdir mkdir -p {}/bin \; \ -execdir ln -s ${ripgrep}/bin/rg {}/bin/rg \; - # patch shebangs of everything, also cached files, as otherwise postinstall - # will not be able to find /usr/bin/env, as it does not exist in sandbox - patchShebangs . - # Playwright is only needed for tests, we can disable it for builds. # There's an environment variable to disable downloads, but the package makes a breaking call to # sw_vers before that variable is checked. patch -p1 -i ${./playwright.patch} - '' + lib.optionalString stdenv.isDarwin '' - # fsevents build fails on Darwin. It's an optional package that's only installed as part of Darwin - # builds, so the patch will fail if run on non-Darwin systems. - patch -p1 -i ${./darwin-fsevents.patch} - '' + '' + + # Replicate install vscode dependencies without running script for all vscode packages + # that require patching for postinstall scripts to succeed + find ./vendor/modules/code-oss-dev -path "*node_modules" -prune -o \ + -path "./*/*/*/*/*" -name "yarn.lock" -printf "%h\n" | \ + xargs -I {} yarn --cwd {} \ + --frozen-lockfile --offline --ignore-scripts --ignore-engines + + # patch shebangs of everything to allow binary packages to build + patchShebangs . + + # patch build esbuild + mkdir -p vendor/modules/code-oss-dev/build/node_modules/esbuild/bin + jq "del(.scripts.postinstall)" vendor/modules/code-oss-dev/build/node_modules/esbuild/package.json | sponge vendor/modules/code-oss-dev/build/node_modules/esbuild/package.json + sed -i 's/0.12.6/${esbuild.version}/g' vendor/modules/code-oss-dev/build/node_modules/esbuild/lib/main.js + ln -s -f ${esbuild}/bin/esbuild vendor/modules/code-oss-dev/build/node_modules/esbuild/bin/esbuild + + # patch extensions esbuild + mkdir -p vendor/modules/code-oss-dev/extensions/node_modules/esbuild/bin + jq "del(.scripts.postinstall)" vendor/modules/code-oss-dev/extensions/node_modules/esbuild/package.json | sponge vendor/modules/code-oss-dev/extensions/node_modules/esbuild/package.json + sed -i 's/0.11.12/${esbuild.version}/g' vendor/modules/code-oss-dev/extensions/node_modules/esbuild/lib/main.js + ln -s -f ${esbuild}/bin/esbuild vendor/modules/code-oss-dev/extensions/node_modules/esbuild/bin/esbuild + # rebuild binaries, we use npm here, as yarn does not provide an alternative # that would not attempt to try to reinstall everything and break our # patching attempts - npm rebuild --prefix lib/vscode --update-binary + npm rebuild --prefix vendor/modules/code-oss-dev --update-binary - # run postinstall scripts, which eventually do yarn install on all - # additional requirements - yarn --cwd lib/vscode postinstall --frozen-lockfile --offline + # run postinstall scripts after patching + find ./vendor/modules/code-oss-dev -path "*node_modules" -prune -o \ + -path "./*/*/*/*/*" -name "yarn.lock" -printf "%h\n" | \ + xargs -I {} sh -c 'jq -e ".scripts.postinstall" {}/package.json >/dev/null && yarn --cwd {} postinstall --frozen-lockfile --offline || true' # build code-server yarn build @@ -206,6 +221,7 @@ in stdenv.mkDerivation rec { yarn --offline --cwd "$out/libexec/code-server" --production # link coder-cloud agent from nix store + mkdir -p $out/libexec/code-server/lib ln -s "${cloudAgent}/bin/cloud-agent" $out/libexec/code-server/lib/coder-cloud-agent # create wrapper diff --git a/pkgs/servers/code-server/playwright.patch b/pkgs/servers/code-server/playwright.patch index e247950173f5..e03d7f82184a 100644 --- a/pkgs/servers/code-server/playwright.patch +++ b/pkgs/servers/code-server/playwright.patch @@ -1,10 +1,10 @@ ---- ./lib/vscode/node_modules/playwright/install.js -+++ ./lib/vscode/node_modules/playwright/install.js +--- ./vendor/modules/code-oss-dev/node_modules/playwright/install.js ++++ ./vendor/modules/code-oss-dev/node_modules/playwright/install.js @@ -14,6 +14,4 @@ * limitations under the License. */ -const { installBrowsersWithProgressBar } = require('./lib/install/installer'); - --installBrowsersWithProgressBar(__dirname); +-installBrowsersWithProgressBar(); +process.stdout.write('Browser install disabled by Nix build script\n'); diff --git a/pkgs/servers/code-server/remove-cloud-agent-download.patch b/pkgs/servers/code-server/remove-cloud-agent-download.patch index 76e9c4b8b912..dd8f6fccb5b9 100644 --- a/pkgs/servers/code-server/remove-cloud-agent-download.patch +++ b/pkgs/servers/code-server/remove-cloud-agent-download.patch @@ -1,11 +1,11 @@ --- ./ci/build/npm-postinstall.sh +++ ./ci/build/npm-postinstall.sh -@@ -24,13 +24,6 @@ main() { +@@ -56,13 +56,6 @@ ;; esac - OS="$(uname | tr '[:upper:]' '[:lower:]')" -- if curl -fsSL "https://storage.googleapis.com/coder-cloud-releases/agent/latest/$OS/cloud-agent" -o ./lib/coder-cloud-agent; then +- if curl -fsSL "https://github.com/cdr/cloud-agent/releases/latest/download/cloud-agent-$OS-$ARCH" -o ./lib/coder-cloud-agent; then - chmod +x ./lib/coder-cloud-agent - else - echo "Failed to download cloud agent; --link will not work" @@ -13,4 +13,4 @@ - if ! vscode_yarn; then echo "You may not have the required dependencies to build the native modules." - echo "Please see https://github.com/cdr/code-server/blob/master/doc/npm.md" + echo "Please see https://github.com/cdr/code-server/blob/master/docs/npm.md" diff --git a/pkgs/servers/computing/slurm/default.nix b/pkgs/servers/computing/slurm/default.nix index bdc0377038ae..8331f888b467 100644 --- a/pkgs/servers/computing/slurm/default.nix +++ b/pkgs/servers/computing/slurm/default.nix @@ -9,7 +9,7 @@ stdenv.mkDerivation rec { pname = "slurm"; - version = "21.08.2.1"; + version = "21.08.3.1"; # N.B. We use github release tags instead of https://www.schedmd.com/downloads.php # because the latter does not keep older releases. @@ -18,7 +18,7 @@ stdenv.mkDerivation rec { repo = "slurm"; # The release tags use - instead of . rev = "${pname}-${builtins.replaceStrings ["."] ["-"] version}"; - sha256 = "1nx5j82hvcifq6j59b8pm5dxmxhb2820kicfkl0gbyw63yx1izjn"; + sha256 = "0riynmdmq44hqjdfd8acvc14miy5yqbwvsmbm1xcgsjdxjan8l2z"; }; outputs = [ "out" "dev" ]; diff --git a/pkgs/servers/dns/knot-dns/default.nix b/pkgs/servers/dns/knot-dns/default.nix index 6f0c7c9ab8fb..2c731b4f1ff8 100644 --- a/pkgs/servers/dns/knot-dns/default.nix +++ b/pkgs/servers/dns/knot-dns/default.nix @@ -5,11 +5,11 @@ stdenv.mkDerivation rec { pname = "knot-dns"; - version = "3.1.3"; + version = "3.1.4"; src = fetchurl { url = "https://secure.nic.cz/files/knot-dns/knot-${version}.tar.xz"; - sha256 = "a3fc448cbce3209575f93a3cf1224fa37802fc6606f7c7d4bb3aa6dbeaed2c64"; + sha256 = "05ebca053b4ce62205a095b6885ed1a1167c629ccac2b3c8dcc431bd2deedf70"; }; outputs = [ "bin" "out" "dev" ]; diff --git a/pkgs/servers/fedigroups/default.nix b/pkgs/servers/fedigroups/default.nix new file mode 100644 index 000000000000..fe3f2f351ace --- /dev/null +++ b/pkgs/servers/fedigroups/default.nix @@ -0,0 +1,40 @@ +{ lib +, stdenv +, fetchFromGitea +, rustPlatform +, pkg-config +, openssl +, Security +}: + +rustPlatform.buildRustPackage rec { + pname = "fedigroups"; + version = "0.4.4"; + + src = fetchFromGitea { + domain = "git.ondrovo.com"; + owner = "MightyPork"; + repo = "group-actor"; + rev = "v${version}"; + sha256 = "sha256-1WqIQp16bs+UB+NSEZn0JH6NOkuAx8iUfho4roA2B00="; + }; + + cargoHash = "sha256-88ToWRkBDXUvnEB2K6q5f3+IMuC3zNzrXrVFZnjbA9o="; + + nativeBuildInputs = [ + pkg-config + ]; + + buildInputs = [ + openssl + ] ++ lib.optional stdenv.isDarwin Security; + + meta = with lib; { + homepage = "https://git.ondrovo.com/MightyPork/group-actor#fedi-groups"; + downloadPage = "https://git.ondrovo.com/MightyPork/group-actor/releases"; + description = "An approximation of groups usable with Fediverse software that implements the Mastodon client API"; + license = licenses.mit; + maintainers = with maintainers; [ fgaz ]; + platforms = platforms.all; + }; +} diff --git a/pkgs/servers/fingerd/bsd-fingerd/default.nix b/pkgs/servers/fingerd/bsd-fingerd/default.nix index 0220a18916b3..4fb6f44b4547 100644 --- a/pkgs/servers/fingerd/bsd-fingerd/default.nix +++ b/pkgs/servers/fingerd/bsd-fingerd/default.nix @@ -7,7 +7,7 @@ stdenv.mkDerivation rec { version = "0.17"; src = fetchurl { - url = "ftp://ftp.metalab.unc.edu/pub/linux/system/network/finger/bsd-finger-${version}.tar.gz"; + url = "mirror://metalab/system/network/finger/bsd-finger-${version}.tar.gz"; sha256 = "1yhkiv0in588il7f84k2xiy78g9lv12ll0y7047gazhiimk5v244"; }; diff --git a/pkgs/servers/gemini/gmnisrv/default.nix b/pkgs/servers/gemini/gmnisrv/default.nix index e3b4179fcf59..8d8ad16e7849 100644 --- a/pkgs/servers/gemini/gmnisrv/default.nix +++ b/pkgs/servers/gemini/gmnisrv/default.nix @@ -2,15 +2,20 @@ stdenv.mkDerivation rec { pname = "gmnisrv"; - version = "unstable-2021-05-16"; + version = "1.0"; src = fetchFromSourcehut { owner = "~sircmpwn"; repo = "gmnisrv"; - rev = "b9a92193e96bbe621ebc8430d8308d45a5b86cef"; - sha256 = "sha256-eMKsoq3Y+eS20nxI7EoDLbdwdoB6shbGt6p8wS+uoPc="; + rev = version; + sha256 = "sha256-V9HXXYQIo3zeqZjJEn+dhemNg6AU+ee3FRmBmXgLuYQ="; }; + postPatch = '' + substituteInPlace config.sh \ + --replace "pkg-config" "${stdenv.cc.targetPrefix}pkg-config" + ''; + MIMEDB = "${mime-types}/etc/mime.types"; nativeBuildInputs = [ pkg-config scdoc ]; buildInputs = [ openssl mime-types ]; diff --git a/pkgs/servers/gerbera/default.nix b/pkgs/servers/gerbera/default.nix index cd70bd352a73..368f2f494151 100644 --- a/pkgs/servers/gerbera/default.nix +++ b/pkgs/servers/gerbera/default.nix @@ -4,7 +4,6 @@ , cmake , pkg-config # required -, fmt , libiconv , libupnp , libuuid @@ -88,7 +87,6 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ cmake pkg-config ]; buildInputs = [ - fmt libiconv libupnp' libuuid diff --git a/pkgs/servers/heisenbridge/default.nix b/pkgs/servers/heisenbridge/default.nix index 67f6b976a079..c03b0ba8846d 100644 --- a/pkgs/servers/heisenbridge/default.nix +++ b/pkgs/servers/heisenbridge/default.nix @@ -2,13 +2,13 @@ python3Packages.buildPythonPackage rec { pname = "heisenbridge"; - version = "1.4.1"; + version = "1.6.0"; # Use the release tarball because it has the version set correctly using the # version.txt file. src = fetchurl { url = "https://github.com/hifi/heisenbridge/releases/download/v${version}/heisenbridge-${version}.tar.gz"; - sha256 = "sha256-+FnpECMDu7d7IM6vmiqP2mA/WJx2WVSzI01tLzkrvpk="; + sha256 = "sha256-NhHMReY48lg1FhJlCRjRiSpy+9bDLtIV+j+zX8GZcL4="; }; propagatedBuildInputs = with python3Packages; [ diff --git a/pkgs/servers/home-assistant/component-packages.nix b/pkgs/servers/home-assistant/component-packages.nix index bd5f41fbf113..dbd447a41f8a 100644 --- a/pkgs/servers/home-assistant/component-packages.nix +++ b/pkgs/servers/home-assistant/component-packages.nix @@ -2,7 +2,7 @@ # Do not edit! { - version = "2021.10.7"; + version = "2021.11.3"; components = { "abode" = ps: with ps; [ abodepy ]; "accuweather" = ps: with ps; [ accuweather ]; @@ -20,7 +20,7 @@ "airly" = ps: with ps; [ airly ]; "airnow" = ps: with ps; [ pyairnow ]; "airthings" = ps: with ps; [ airthings-cloud ]; - "airtouch4" = ps: with ps; [ ]; # missing inputs: airtouch4pyapi + "airtouch4" = ps: with ps; [ airtouch4pyapi ]; "airvisual" = ps: with ps; [ pyairvisual ]; "aladdin_connect" = ps: with ps; [ aladdin-connect ]; "alarm_control_panel" = ps: with ps; [ ]; @@ -243,7 +243,6 @@ "epsonworkforce" = ps: with ps; [ ]; # missing inputs: epsonprinter "eq3btsmart" = ps: with ps; [ construct ]; # missing inputs: python-eq3bt "esphome" = ps: with ps; [ aioesphomeapi aiohttp-cors ifaddr zeroconf ]; - "essent" = ps: with ps; [ ]; # missing inputs: PyEssent "etherscan" = ps: with ps; [ ]; # missing inputs: python-etherscan-api "eufy" = ps: with ps; [ ]; # missing inputs: lakeside "everlights" = ps: with ps; [ pyeverlights ]; @@ -379,7 +378,6 @@ "http" = ps: with ps; [ aiohttp-cors ]; "htu21d" = ps: with ps; [ smbus-cffi ]; # missing inputs: i2csense "huawei_lte" = ps: with ps; [ huawei-lte-api stringcase url-normalize ]; - "huawei_router" = ps: with ps; [ ]; "hue" = ps: with ps; [ aiohue ]; "huisbaasje" = ps: with ps; [ huisbaasje-client ]; "humidifier" = ps: with ps; [ ]; @@ -450,7 +448,7 @@ "lametric" = ps: with ps; [ lmnotify ]; "lannouncer" = ps: with ps; [ ]; "lastfm" = ps: with ps; [ pylast ]; - "launch_library" = ps: with ps; [ ]; # missing inputs: pylaunches + "launch_library" = ps: with ps; [ pylaunches ]; "lcn" = ps: with ps; [ pypck ]; "lg_netcast" = ps: with ps; [ pylgnetcast ]; "lg_soundbar" = ps: with ps; [ ]; # missing inputs: temescal @@ -477,6 +475,7 @@ "logi_circle" = ps: with ps; [ aiohttp-cors ha-ffmpeg ]; # missing inputs: logi_circle "london_air" = ps: with ps; [ ]; "london_underground" = ps: with ps; [ ]; # missing inputs: london-tube-status + "lookin" = ps: with ps; [ aiolookin ]; "loopenergy" = ps: with ps; [ ]; # missing inputs: pyloopenergy "lovelace" = ps: with ps; [ ]; "luci" = ps: with ps; [ openwrt-luci-rpc ]; @@ -485,7 +484,6 @@ "lutron" = ps: with ps; [ pylutron ]; "lutron_caseta" = ps: with ps; [ aiolip pylutron-caseta ]; "lw12wifi" = ps: with ps; [ ]; # missing inputs: lw12 - "lyft" = ps: with ps; [ ]; # missing inputs: lyft_rides "lyric" = ps: with ps; [ aiohttp-cors aiolyric ]; "magicseaweed" = ps: with ps; [ ]; # missing inputs: magicseaweed "mailbox" = ps: with ps; [ aiohttp-cors ]; @@ -535,7 +533,7 @@ "mold_indicator" = ps: with ps; [ ]; "monoprice" = ps: with ps; [ ]; # missing inputs: pymonoprice "moon" = ps: with ps; [ ]; - "motion_blinds" = ps: with ps; [ ]; # missing inputs: motionblinds + "motion_blinds" = ps: with ps; [ aiohttp-cors ifaddr ]; # missing inputs: motionblinds "motioneye" = ps: with ps; [ aiohttp-cors motioneye-client ]; "mpchc" = ps: with ps; [ ]; "mpd" = ps: with ps; [ mpd2 ]; @@ -561,7 +559,6 @@ "nanoleaf" = ps: with ps; [ aionanoleaf ]; "neato" = ps: with ps; [ aiohttp-cors pybotvac ]; "nederlandse_spoorwegen" = ps: with ps; [ nsapi ]; - "nello" = ps: with ps; [ pynello ]; "ness_alarm" = ps: with ps; [ ]; # missing inputs: nessclient "nest" = ps: with ps; [ aiohttp-cors ha-ffmpeg python-nest ]; # missing inputs: google-nest-sdm "netatmo" = ps: with ps; [ pyturbojpeg aiohttp-cors hass-nabucasa pyatmo ]; @@ -599,7 +596,7 @@ "nzbget" = ps: with ps; [ ]; # missing inputs: pynzbgetapi "oasa_telematics" = ps: with ps; [ ]; # missing inputs: oasatelematics "obihai" = ps: with ps; [ pyobihai ]; - "octoprint" = ps: with ps; [ aiohttp-cors ifaddr netdisco zeroconf ]; + "octoprint" = ps: with ps; [ ]; # missing inputs: pyoctoprintapi "oem" = ps: with ps; [ ]; # missing inputs: oemthermostat "ohmconnect" = ps: with ps; [ defusedxml ]; "ombi" = ps: with ps; [ pyombi ]; @@ -634,7 +631,7 @@ "owntracks" = ps: with ps; [ pynacl pyturbojpeg aiohttp-cors hass-nabucasa paho-mqtt ]; "ozw" = ps: with ps; [ aiohttp-cors paho-mqtt python-openzwave-mqtt ]; "p1_monitor" = ps: with ps; [ p1monitor ]; - "panasonic_bluray" = ps: with ps; [ ]; # missing inputs: panacotta + "panasonic_bluray" = ps: with ps; [ panacotta ]; "panasonic_viera" = ps: with ps; [ ]; # missing inputs: panasonic_viera "pandora" = ps: with ps; [ pexpect ]; "panel_custom" = ps: with ps; [ aiohttp-cors home-assistant-frontend pillow sqlalchemy ]; @@ -716,7 +713,7 @@ "ripple" = ps: with ps; [ ]; # missing inputs: python-ripple-api "risco" = ps: with ps; [ pyrisco ]; "rituals_perfume_genie" = ps: with ps; [ pyrituals ]; - "rmvtransport" = ps: with ps; [ PyRMVtransport ]; + "rmvtransport" = ps: with ps; [ pyrmvtransport ]; "rocketchat" = ps: with ps; [ ]; # missing inputs: rocketchat-API "roku" = ps: with ps; [ rokuecp ]; "roomba" = ps: with ps; [ roombapy ]; @@ -826,7 +823,7 @@ "steam_online" = ps: with ps; [ ]; # missing inputs: steamodd "stiebel_eltron" = ps: with ps; [ pymodbus ]; # missing inputs: pystiebeleltron "stookalert" = ps: with ps; [ ]; # missing inputs: stookalert - "stream" = ps: with ps; [ aiohttp-cors av ]; + "stream" = ps: with ps; [ aiohttp-cors ha-av ]; "streamlabswater" = ps: with ps; [ streamlabswater ]; "stt" = ps: with ps; [ aiohttp-cors ]; "subaru" = ps: with ps; [ subarulink ]; @@ -893,7 +890,7 @@ "touchline" = ps: with ps; [ ]; # missing inputs: pytouchline "tplink" = ps: with ps; [ aiohttp-cors ifaddr python-kasa ]; "tplink_lte" = ps: with ps; [ ]; # missing inputs: tp-connected - "traccar" = ps: with ps; [ aiohttp-cors stringcase ]; # missing inputs: pytraccar + "traccar" = ps: with ps; [ aiohttp-cors pytraccar stringcase ]; "trace" = ps: with ps; [ ]; "tractive" = ps: with ps; [ aiotractive ]; "tradfri" = ps: with ps; [ pytradfri ]; @@ -904,7 +901,7 @@ "travisci" = ps: with ps; [ ]; # missing inputs: TravisPy "trend" = ps: with ps; [ numpy ]; "tts" = ps: with ps; [ aiohttp-cors mutagen ]; - "tuya" = ps: with ps; [ tuya-iot-py-sdk ]; + "tuya" = ps: with ps; [ ha-ffmpeg tuya-iot-py-sdk ]; "twentemilieu" = ps: with ps; [ twentemilieu ]; "twilio" = ps: with ps; [ aiohttp-cors twilio ]; "twilio_call" = ps: with ps; [ aiohttp-cors twilio ]; @@ -925,7 +922,7 @@ "updater" = ps: with ps; [ ]; "upnp" = ps: with ps; [ aiohttp-cors async-upnp-client ifaddr zeroconf ]; "uptime" = ps: with ps; [ ]; - "uptimerobot" = ps: with ps; [ ]; # missing inputs: pyuptimerobot + "uptimerobot" = ps: with ps; [ pyuptimerobot ]; "usb" = ps: with ps; [ aiohttp-cors pyserial pyudev ]; "uscis" = ps: with ps; [ ]; # missing inputs: uscisstatus "usgs_earthquakes_feed" = ps: with ps; [ geojson-client ]; @@ -948,7 +945,7 @@ "vivotek" = ps: with ps; [ ]; # missing inputs: libpyvivotek "vizio" = ps: with ps; [ pyvizio ]; "vlc" = ps: with ps; [ python-vlc ]; - "vlc_telnet" = ps: with ps; [ ]; # missing inputs: python-telnet-vlc + "vlc_telnet" = ps: with ps; [ ]; # missing inputs: aiovlc "voicerss" = ps: with ps; [ ]; "volkszaehler" = ps: with ps; [ volkszaehler ]; "volumio" = ps: with ps; [ pyvolumio ]; @@ -973,7 +970,6 @@ "whois" = ps: with ps; [ python-whois ]; "wiffi" = ps: with ps; [ wiffi ]; "wilight" = ps: with ps; [ pywilight ]; - "wink" = ps: with ps; [ aiohttp-cors pubnubsub-handler python-wink ]; "wirelesstag" = ps: with ps; [ ]; # missing inputs: wirelesstagpy "withings" = ps: with ps; [ aiohttp-cors ]; # missing inputs: withings-api "wled" = ps: with ps; [ wled ]; diff --git a/pkgs/servers/home-assistant/default.nix b/pkgs/servers/home-assistant/default.nix index cf22845108e1..03389f7b7d24 100644 --- a/pkgs/servers/home-assistant/default.nix +++ b/pkgs/servers/home-assistant/default.nix @@ -37,16 +37,16 @@ let # Override the version of some packages pinned in Home Assistant's setup.py and requirements_all.txt (mkOverride "python-slugify" "4.0.1" "69a517766e00c1268e5bbfc0d010a0a8508de0b18d30ad5a1ff357f8ae724270") - # Pinned due to API changes in aioesphomeapi>=10.0.0 (self: super: { - aioesphomeapi = super.aioesphomeapi.overridePythonAttrs (oldAttrs: rec { - version = "9.1.5"; + huawei-lte-api = super.huawei-lte-api.overridePythonAttrs (oldAttrs: rec { + version = "1.4.18"; src = fetchFromGitHub { - owner = "esphome"; - repo = "aioesphomeapi"; - rev = "v${version}"; - sha256 = "sha256-PPag65ZMz9KZEe9FmiB42/DgeM0vJw5L0haAG/jBjqg="; + owner = "Salamek"; + repo = "huawei-lte-api"; + rev = version; + sha256 = "1qaqxmh03j10wa9wqbwgc5r3ays8wfr7bldvsm45fycr3qfyn5fg"; }; + propagatedBuildInputs = oldAttrs.propagatedBuildInputs ++ [ python3.pkgs.dicttoxml ]; }); }) @@ -78,6 +78,18 @@ let }); }) + (self: super: { + nettigo-air-monitor = super.nettigo-air-monitor.overridePythonAttrs (oldAttrs: rec { + version = "1.1.1"; + src = fetchFromGitHub { + owner = "bieniu"; + repo = "nettigo-air-monitor"; + rev = version; + sha256 = "sha256-OIB1d6XtstUr5P0q/dmyJS7+UbtkFQIiuSnzwcdP1mE="; + }; + }); + }) + # Pinned due to API changes in pyruckus>0.12 (self: super: { pyruckus = super.pyruckus.overridePythonAttrs (oldAttrs: rec { @@ -107,33 +119,6 @@ let # Pinned due to API changes in 0.1.0 (mkOverride "poolsense" "0.0.8" "09y4fq0gdvgkfsykpxnvmfv92dpbknnq5v82spz43ak6hjnhgcyp") - # Pinned due to missing simpliypy.errors.PendingAuthorizationError in simplisafe-python>12 which results in a failing import - (self: super: { - simplisafe-python = super.simplisafe-python.overridePythonAttrs (oldAttrs: rec { - version = "11.0.7"; - src = fetchFromGitHub { - owner = "bachya"; - repo = "simplisafe-python"; - rev = version; - sha256 = "02nrighkdcd5n9qgbizm9gyfnpgdm4iibw7y8nbyfaxpng069fzp"; - }; - checkInputs = oldAttrs.checkInputs ++ [ super.aioresponses ]; - }); - }) - - # Pinned due to changes in total-connect-client>0.58 which made the tests fails at the moment - (self: super: { - total-connect-client = super.total-connect-client.overridePythonAttrs (oldAttrs: rec { - version = "0.58"; - src = fetchFromGitHub { - owner = "craigjmidwinter"; - repo = "total-connect-client"; - rev = version; - sha256 = "1dqmgvgvwjh235wghygan2jnfvmn9vz789in2as3asig9cifix9z"; - }; - }); - }) - # home-assistant-frontend does not exist in python3.pkgs (self: super: { home-assistant-frontend = self.callPackage ./frontend.nix { }; @@ -167,7 +152,7 @@ let extraBuildInputs = extraPackages py.pkgs; # Don't forget to run parse-requirements.py after updating - hassVersion = "2021.10.7"; + hassVersion = "2021.11.3"; in with py.pkgs; buildPythonApplication rec { pname = "homeassistant"; @@ -184,7 +169,7 @@ in with py.pkgs; buildPythonApplication rec { owner = "home-assistant"; repo = "core"; rev = version; - sha256 = "1kibny2hd91c011bv7g46sn5q9fg6wmrbwzwckwa737d6gj27c1y"; + sha256 = "sha256-HycMb29niuUp7flRdWgrKSOcnr0l3PqjULCrgrwLrFw="; }; # leave this in, so users don't have to constantly update their downstream patch handling @@ -195,8 +180,8 @@ in with py.pkgs; buildPythonApplication rec { postPatch = '' substituteInPlace setup.py \ --replace "bcrypt==3.1.7" "bcrypt" \ - --replace "jinja2==3.0.1" "jinja2" \ --replace "pip>=8.0.3,<20.3" "pip" \ + --replace "pyyaml==6.0" "pyyaml" \ --replace "yarl==1.6.3" "yarl==1.7.0" substituteInPlace tests/test_config.py --replace '"/usr"' '"/build/media"' ''; @@ -237,9 +222,12 @@ in with py.pkgs; buildPythonApplication rec { checkInputs = [ # test infrastructure (selectively from requirement_test.txt) + freezegun pytest-aiohttp + pytest-freezegun pytest-mock pytest-rerunfailures + pytest-socket pytest-xdist pytestCheckHook requests-mock @@ -357,6 +345,7 @@ in with py.pkgs; buildPythonApplication rec { "ecobee" "econet" "ee_brightbox" + "efergy" "elgato" "elkm1" "emonitor" @@ -698,6 +687,7 @@ in with py.pkgs; buildPythonApplication rec { "toon" "totalconnect" "tplink" + "traccar" "trace" "tradfri" "transmission" @@ -719,6 +709,7 @@ in with py.pkgs; buildPythonApplication rec { # disabled, because it tries to join a multicast group and fails to find a usable network interface # "upnp" "uptime" + "uptimerobot" "usgs_earthquakes_feed" "utility_meter" "uvc" @@ -834,8 +825,9 @@ in with py.pkgs; buildPythonApplication rec { "tests/auth/mfa_modules/test_notify.py" # emulated_hue/test_upnp.py: Tries to establish the public ipv4 address "tests/components/emulated_hue/test_upnp.py" - # tado/test_climate.py: Tries to connect to my.tado.com + # tado/test_{climate,water_heater}.py: Tries to connect to my.tado.com "tests/components/tado/test_climate.py" + "tests/components/tado/test_water_heater.py" ]; disabledTests = [ diff --git a/pkgs/servers/home-assistant/frontend.nix b/pkgs/servers/home-assistant/frontend.nix index 7207a937c38d..bf614a11e027 100644 --- a/pkgs/servers/home-assistant/frontend.nix +++ b/pkgs/servers/home-assistant/frontend.nix @@ -4,11 +4,11 @@ buildPythonPackage rec { # the frontend version corresponding to a specific home-assistant version can be found here # https://github.com/home-assistant/home-assistant/blob/master/homeassistant/components/frontend/manifest.json pname = "home-assistant-frontend"; - version = "20211007.1"; + version = "20211109.0"; src = fetchPypi { inherit pname version; - sha256 = "sha256-wsDNLwzhpwH5vwdHRWhZGlumjFM8/S+kXProbD+VpE8="; + sha256 = "sha256-DXL+D58kS8q4we6/r6iRuXA/d9NOoYUp9A3vsHQ0KVg="; }; # there is nothing to strip in this package diff --git a/pkgs/servers/hqplayerd/default.nix b/pkgs/servers/hqplayerd/default.nix index a461608badf0..4bd1ea3d63e0 100644 --- a/pkgs/servers/hqplayerd/default.nix +++ b/pkgs/servers/hqplayerd/default.nix @@ -11,6 +11,7 @@ , lib , libgmpris , llvmPackages_10 +, mpg123 , rpmextract , wavpack @@ -44,11 +45,11 @@ let in stdenv.mkDerivation rec { pname = "hqplayerd"; - version = "4.26.2-69"; + version = "4.27.2-72"; src = fetchurl { - url = "https://www.signalyst.eu/bins/${pname}/fc34/${pname}-${version}.fc34.x86_64.rpm"; - sha256 = "sha256-zxUVtOi4fN3EuCbzH/SEse24Qz7/0jozzDX1yW8bhCU="; + url = "https://www.signalyst.eu/bins/${pname}/fc34/${pname}-${version}sse42.fc34.x86_64.rpm"; + sha256 = "sha256-oCZS68n9R6Hm6lltcL6zQhPaU9FRqtB59DrstRNjnH8="; }; unpackPhase = '' @@ -68,6 +69,7 @@ stdenv.mkDerivation rec { gupnp-av_0_12 libgmpris llvmPackages_10.openmp + mpg123 wavpack ]; diff --git a/pkgs/servers/http/couchdb/3.nix b/pkgs/servers/http/couchdb/3.nix index 50d4012297fc..4a7144a8e185 100644 --- a/pkgs/servers/http/couchdb/3.nix +++ b/pkgs/servers/http/couchdb/3.nix @@ -1,16 +1,16 @@ { lib, stdenv, fetchurl, erlang, icu, openssl, spidermonkey_78 -, coreutils, bash, makeWrapper, python3 }: +, coreutils, bash, makeWrapper, python3, nixosTests }: stdenv.mkDerivation rec { pname = "couchdb"; - version = "3.2.0"; + version = "3.2.1"; # when updating this, please consider bumping the erlang/OTP version # in all-packages.nix src = fetchurl { url = "mirror://apache/couchdb/source/${version}/apache-${pname}-${version}.tar.gz"; - sha256 = "035hy76399yy32rxl536gv7nh8ijihqxhhh5cxn95c3bm97mgslb"; + sha256 = "1y5cfic88drlr9qiwyj2p8xc9m9hcbvw77j5lwbp0cav78f2vphi"; }; buildInputs = [ erlang icu openssl spidermonkey_78 (python3.withPackages(ps: with ps; [ requests ]))]; @@ -28,6 +28,10 @@ stdenv.mkDerivation rec { cp -r rel/couchdb/* $out ''; + passthru.tests = { + inherit (nixosTests) couchdb; + }; + meta = with lib; { description = "A database that uses JSON for documents, JavaScript for MapReduce queries, and regular HTTP for an API"; homepage = "http://couchdb.apache.org"; diff --git a/pkgs/servers/http/jetty/default.nix b/pkgs/servers/http/jetty/default.nix index f226e0ad7e4a..25eb0c6312cb 100644 --- a/pkgs/servers/http/jetty/default.nix +++ b/pkgs/servers/http/jetty/default.nix @@ -4,7 +4,7 @@ stdenv.mkDerivation rec { pname = "jetty"; version = "9.4.43.v20210629"; src = fetchurl { - url = "https://repo1.maven.org/maven2/org/eclipse/jetty/jetty-distribution/${version}/jetty-distribution-${version}.tar.gz"; + url = "mirror://maven/org/eclipse/jetty/jetty-distribution/${version}/jetty-distribution-${version}.tar.gz"; sha256 = "sha256-AfrmVLCZMuRGAZqoWeevbgXifbreErVM17rjJJ/HI9k="; }; diff --git a/pkgs/servers/http/nginx/mainline.nix b/pkgs/servers/http/nginx/mainline.nix index 1b63b06f2cb4..774a3cbe6deb 100644 --- a/pkgs/servers/http/nginx/mainline.nix +++ b/pkgs/servers/http/nginx/mainline.nix @@ -1,6 +1,6 @@ -{ callPackage, ... }@args: +{ callPackage, openssl_3_0, ... }@args: -callPackage ./generic.nix args { - version = "1.21.3"; - sha256 = "0nhps7igdqcpcy1r8677ar807rfclpylmz3y858a678m1np4lxql"; +callPackage ./generic.nix (args // { openssl = openssl_3_0; }) { + version = "1.21.4"; + sha256 = "1ziv3xargxhxycd5hp6r3r5mww54nvvydiywcpsamg3i9r3jzxyi"; } diff --git a/pkgs/servers/http/nginx/modules.nix b/pkgs/servers/http/nginx/modules.nix index 2919438d1e4b..de65e75ab9da 100644 --- a/pkgs/servers/http/nginx/modules.nix +++ b/pkgs/servers/http/nginx/modules.nix @@ -498,10 +498,10 @@ in name = "video-thumbextractor"; owner = "wandenberg"; repo = "nginx-video-thumbextractor-module"; - rev = "0.9.0"; - sha256 = "1b0v471mzbcys73pzr7gpvzzhff0cva0l5ff32cv7z1v9c0ypji7"; + rev = "92b80642538eec4cfc98114dec5917b8d820e912"; + sha256 = "0a8d9ifryhhnll7k7jcsf9frshk5yhpsgz7zgxdmw81wbz5hxklc"; }; - inputs = [ pkgs.ffmpeg_3 ]; + inputs = [ pkgs.ffmpeg ]; }; vod = { diff --git a/pkgs/servers/http/ran/default.nix b/pkgs/servers/http/ran/default.nix index 5d58506be3ff..087e23b29873 100644 --- a/pkgs/servers/http/ran/default.nix +++ b/pkgs/servers/http/ran/default.nix @@ -42,6 +42,5 @@ buildGoModule rec { description = "Ran is a simple web server for serving static files"; license = licenses.mit; maintainers = with maintainers; [ tomberek ]; - platforms = platforms.unix; }; } diff --git a/pkgs/servers/invidious/default.nix b/pkgs/servers/invidious/default.nix index 183770a94f41..7e939f51bc95 100644 --- a/pkgs/servers/invidious/default.nix +++ b/pkgs/servers/invidious/default.nix @@ -8,17 +8,17 @@ let # * shards.nix (by running `crystal2nix` in invidious’ source tree) # * If the lsquic.cr dependency changed: lsquic in lsquic.nix (version, sha256) # * If the lsquic version changed: boringssl' in lsquic.nix (version, sha256) - rev = "21b96a31599e890fe063e3e24cf5f3a995779a69"; + rev = "21879da80d2dfa97e789a13b90e82e466c4854e3"; in crystal.buildCrystalPackage rec { pname = "invidious"; - version = "unstable-2021-10-15"; + version = "unstable-2021-11-08"; src = fetchFromGitHub { owner = "iv-org"; repo = pname; inherit rev; - sha256 = "sha256-Rp3YqjHbP6szohlaEpgopFNdLK31yrcHtyKCeVz76CA="; + sha256 = "0jvnwjdh2l0hxfvzim00r3zbs528bb93y1nk0bjrbbrcfv5cn5ss"; }; postPatch = diff --git a/pkgs/servers/klipper/default.nix b/pkgs/servers/klipper/default.nix index f8d49770370f..ebd8d26de125 100644 --- a/pkgs/servers/klipper/default.nix +++ b/pkgs/servers/klipper/default.nix @@ -6,21 +6,15 @@ }: stdenv.mkDerivation rec { pname = "klipper"; - version = "unstable-2021-09-03"; + version = "unstable-2021-11-10"; src = fetchFromGitHub { owner = "KevinOConnor"; repo = "klipper"; - rev = "c84956befe88daeeb9512acaa9fa82395665df16"; - sha256 = "sha256-dHFIeA2RCoqC0ROYUUbSoLZ4frRWBJaNJWohpK8xN7I="; + rev = "c179db3d4331db9d85c7acfdaa1e96e295d277ba"; + sha256 = "sha256-/fFbhKiSQq9E9iucinTgUTyOtfDKCMgvzebHjfOaJ+M="; }; - # We have no LTO on i686 since commit 22284b0 - postPatch = lib.optionalString stdenv.isi686 '' - substituteInPlace chelper/__init__.py \ - --replace "-flto -fwhole-program " "" - ''; - sourceRoot = "source/klippy"; # there is currently an attempt at moving it to Python 3, but it will remain diff --git a/pkgs/servers/libreddit/default.nix b/pkgs/servers/libreddit/default.nix index 1a2703b8ad45..56e04b340844 100644 --- a/pkgs/servers/libreddit/default.nix +++ b/pkgs/servers/libreddit/default.nix @@ -8,16 +8,16 @@ rustPlatform.buildRustPackage rec { pname = "libreddit"; - version = "0.15.3"; + version = "0.16.0"; src = fetchFromGitHub { owner = "spikecodes"; repo = pname; rev = "v${version}"; - sha256 = "sha256-G7QJhRmfqzDIfBHu8rSSMVlBoazY+0iDS7VJsmxaLqI="; + sha256 = "sha256-E8PoUoHsrTKgLBs3b/C2x/nRrL99eiVNscRtDfKIWNc="; }; - cargoSha256 = "sha256-xvPwzRGmRVe+Og78fKqcvf3I0uMR9DOdOXMNbuLI8sY="; + cargoSha256 = "sha256-tK0wvmn+U4pdDdBhmXJ2TmFRro85kfFkYVkxBXftbdE="; buildInputs = lib.optional stdenv.isDarwin Security; diff --git a/pkgs/servers/mail/dovecot/plugins/fts_xapian/default.nix b/pkgs/servers/mail/dovecot/plugins/fts_xapian/default.nix index 841ee7915a43..90859efd3c48 100644 --- a/pkgs/servers/mail/dovecot/plugins/fts_xapian/default.nix +++ b/pkgs/servers/mail/dovecot/plugins/fts_xapian/default.nix @@ -1,13 +1,13 @@ { lib, stdenv, fetchFromGitHub, autoconf, automake, pkg-config, dovecot, libtool, xapian, icu64 }: stdenv.mkDerivation rec { pname = "fts-xapian"; - version = "1.4.11"; + version = "1.4.14"; src = fetchFromGitHub { owner = "grosjo"; repo = "fts-xapian"; rev = version; - sha256 = "sha256-HPmS2Z1PIEM9fc6EerCEigQJg5BK/115zOW2uxFqjP0="; + sha256 = "sha256-Banyg10AiM1Jw6Zfl4Dcpc0/6Km48lLVuQ3xRLylE7k="; }; buildInputs = [ dovecot xapian icu64 ]; diff --git a/pkgs/servers/mail/mailman/postorius.nix b/pkgs/servers/mail/mailman/postorius.nix index d807f7f797c0..57df52d0a0a6 100644 --- a/pkgs/servers/mail/mailman/postorius.nix +++ b/pkgs/servers/mail/mailman/postorius.nix @@ -6,11 +6,11 @@ buildPythonPackage rec { pname = "postorius"; # Note: Mailman core must be on the latest version before upgrading Postorious. # See: https://gitlab.com/mailman/postorius/-/issues/516#note_544571309 - version = "1.3.4"; + version = "1.3.5"; src = fetchPypi { inherit pname version; - sha256 = "sha256-L2ApUGQNvR0UVvodVM+wMzjYLZkegI4fT4yUiU/cibU="; + sha256 = "0f23c6542bf0f6e6364d678c094ee5804acfe59ecbcc0e944bc4c13834e24e80"; }; propagatedBuildInputs = [ django-mailman3 readme_renderer ]; diff --git a/pkgs/servers/mail/postfix/default.nix b/pkgs/servers/mail/postfix/default.nix index 6af262567720..92fe6e0403a2 100644 --- a/pkgs/servers/mail/postfix/default.nix +++ b/pkgs/servers/mail/postfix/default.nix @@ -24,11 +24,11 @@ let in stdenv.mkDerivation rec { pname = "postfix"; - version = "3.6.2"; + version = "3.6.3"; src = fetchurl { url = "http://cdn.postfix.johnriley.me/mirrors/postfix-release/official/${pname}-${version}.tar.gz"; - sha256 = "sha256-UHMj0g17P3BfSc+MB9Q3xtgJC+0H4Vo8DsQF7a1Up9Q="; + sha256 = "1g5ii5vvcr87qkabsbyg3n7kzy1g5k2n5gwa8468w5d0ava424hg"; }; nativeBuildInputs = [ makeWrapper m4 ]; diff --git a/pkgs/servers/mail/rspamd/default.nix b/pkgs/servers/mail/rspamd/default.nix index 3b65b413a480..a826a7afc9ac 100644 --- a/pkgs/servers/mail/rspamd/default.nix +++ b/pkgs/servers/mail/rspamd/default.nix @@ -11,13 +11,13 @@ assert withHyperscan -> stdenv.isx86_64; stdenv.mkDerivation rec { pname = "rspamd"; - version = "3.0"; + version = "3.1"; src = fetchFromGitHub { owner = "rspamd"; repo = "rspamd"; rev = version; - sha256 = "sha256-MXnaQhTDV6ji5634TXA5vvXBlA/SilwM0YYL8DjQL9s="; + sha256 = "sha256-w3pvjU6b4IAl27QvY16UdBi1v1iJnnkLRUC54eXdH9I="; }; hardeningEnable = [ "pie" ]; @@ -44,7 +44,7 @@ stdenv.mkDerivation rec { homepage = "https://rspamd.com"; license = licenses.asl20; description = "Advanced spam filtering system"; - maintainers = with maintainers; [ avnik fpletz globin ]; + maintainers = with maintainers; [ avnik fpletz globin lewo ]; platforms = with platforms; linux; }; } diff --git a/pkgs/servers/mail/sympa/default.nix b/pkgs/servers/mail/sympa/default.nix index 8387f2eb9cf6..4d439bf760af 100644 --- a/pkgs/servers/mail/sympa/default.nix +++ b/pkgs/servers/mail/sympa/default.nix @@ -61,13 +61,13 @@ let in stdenv.mkDerivation rec { pname = "sympa"; - version = "6.2.64"; + version = "6.2.66"; src = fetchFromGitHub { owner = "sympa-community"; repo = pname; rev = version; - sha256 = "sha256-7bBOhx6sDyln37OEgRLJwgu0rklJm872hINog2EJ/+E="; + sha256 = "sha256-rD6sYsEsAyu+4Vy2wMtWCtlzXoLeZgeu9hkoxOvwiP4="; }; configureFlags = [ diff --git a/pkgs/servers/matrix-synapse/default.nix b/pkgs/servers/matrix-synapse/default.nix index ed6b7ccd9f64..676abec8ecca 100644 --- a/pkgs/servers/matrix-synapse/default.nix +++ b/pkgs/servers/matrix-synapse/default.nix @@ -5,26 +5,10 @@ }: let -py = python3.override { - packageOverrides = self: super: { - frozendict = super.frozendict.overridePythonAttrs (oldAttrs: rec { - version = "1.2"; - src = oldAttrs.src.override { - inherit version; - sha256 = "0ibf1wipidz57giy53dh7mh68f2hz38x8f4wdq88mvxj5pr7jhbp"; - }; - doCheck = false; - }); - }; -}; -in - -with py.pkgs; - -let - plugins = py.pkgs.callPackage ./plugins { }; + plugins = python3.pkgs.callPackage ./plugins { }; tools = callPackage ./tools { }; in +with python3.pkgs; buildPythonApplication rec { pname = "matrix-synapse"; version = "1.46.0"; @@ -82,13 +66,13 @@ buildPythonApplication rec { doCheck = !stdenv.isDarwin; checkPhase = '' - PYTHONPATH=".:$PYTHONPATH" ${py.interpreter} -m twisted.trial -j $NIX_BUILD_CORES tests + PYTHONPATH=".:$PYTHONPATH" ${python3.interpreter} -m twisted.trial -j $NIX_BUILD_CORES tests ''; passthru.tests = { inherit (nixosTests) matrix-synapse; }; passthru.plugins = plugins; passthru.tools = tools; - passthru.python = py; + passthru.python = python3; meta = with lib; { homepage = "https://matrix.org"; diff --git a/pkgs/servers/matrix-synapse/matrix-appservice-irc/REVISION b/pkgs/servers/matrix-synapse/matrix-appservice-irc/REVISION new file mode 100644 index 000000000000..c25c8e5b7416 --- /dev/null +++ b/pkgs/servers/matrix-synapse/matrix-appservice-irc/REVISION @@ -0,0 +1 @@ +0.30.0 diff --git a/pkgs/servers/matrix-synapse/matrix-appservice-irc/default.nix b/pkgs/servers/matrix-synapse/matrix-appservice-irc/default.nix index 7b5779b958d2..33ac1fca4672 100644 --- a/pkgs/servers/matrix-synapse/matrix-appservice-irc/default.nix +++ b/pkgs/servers/matrix-synapse/matrix-appservice-irc/default.nix @@ -1,16 +1,22 @@ -{ pkgs, nodePackages, makeWrapper, nixosTests, nodejs, stdenv, lib, ... }: +{ pkgs, nodePackages, makeWrapper, nixosTests, nodejs, stdenv, lib, fetchFromGitHub }: let - - packageName = with lib; concatStrings (map (entry: (concatStrings (mapAttrsToList (key: value: "${key}-${value}") entry))) (importJSON ./package.json)); - ourNodePackages = import ./node-composition.nix { inherit pkgs nodejs; inherit (stdenv.hostPlatform) system; }; + version = builtins.replaceStrings [ "\n" ] [ "" ] (builtins.readFile ./REVISION); in -ourNodePackages."${packageName}".override { +ourNodePackages.package.override { pname = "matrix-appservice-irc"; + inherit version; + + src = fetchFromGitHub { + owner = "matrix-org"; + repo = "matrix-appservice-irc"; + rev = version; + sha256 = "sha256-EncodJKptrLC54B5XipkiHXFgJ5cD+crcT3SOPOc+7M="; + }; nativeBuildInputs = [ makeWrapper nodePackages.node-gyp-build ]; diff --git a/pkgs/servers/matrix-synapse/matrix-appservice-irc/generate-dependencies.sh b/pkgs/servers/matrix-synapse/matrix-appservice-irc/generate-dependencies.sh index fc89486cfbc0..a7cafab319ee 100755 --- a/pkgs/servers/matrix-synapse/matrix-appservice-irc/generate-dependencies.sh +++ b/pkgs/servers/matrix-synapse/matrix-appservice-irc/generate-dependencies.sh @@ -3,9 +3,9 @@ ROOT="$(realpath "$(dirname -- "$(readlink -f -- "${BASH_SOURCE[0]}")")"/../../../..)" $(nix-build $ROOT -A nodePackages.node2nix --no-out-link)/bin/node2nix \ - --nodejs-12 \ + --nodejs-14 \ --node-env ../../../development/node-packages/node-env.nix \ --development \ - --input package.json \ + --lock ./package-lock-temp.json \ --output node-packages.nix \ --composition node-composition.nix diff --git a/pkgs/servers/matrix-synapse/matrix-appservice-irc/node-composition.nix b/pkgs/servers/matrix-synapse/matrix-appservice-irc/node-composition.nix index e0d21f7d44d3..6fb86dfd79e7 100644 --- a/pkgs/servers/matrix-synapse/matrix-appservice-irc/node-composition.nix +++ b/pkgs/servers/matrix-synapse/matrix-appservice-irc/node-composition.nix @@ -2,7 +2,7 @@ {pkgs ? import <nixpkgs> { inherit system; - }, system ? builtins.currentSystem, nodejs ? pkgs."nodejs-12_x"}: + }, system ? builtins.currentSystem, nodejs ? pkgs."nodejs-14_x"}: let nodeEnv = import ../../../development/node-packages/node-env.nix { diff --git a/pkgs/servers/matrix-synapse/matrix-appservice-irc/node-packages.nix b/pkgs/servers/matrix-synapse/matrix-appservice-irc/node-packages.nix index 290eae2c02ff..f2d2b6fc94c1 100644 --- a/pkgs/servers/matrix-synapse/matrix-appservice-irc/node-packages.nix +++ b/pkgs/servers/matrix-synapse/matrix-appservice-irc/node-packages.nix @@ -76,13 +76,13 @@ let sha512 = "YSCOwxvTYEIMSGaBQb5kDDsCopDdiUGsqpatp3fOlI4+2HQSkTmEVWnVuySdAC5EWCqSWWTv0ib63RjR7dTBdg=="; }; }; - "@babel/parser-7.14.4" = { + "@babel/parser-7.14.3" = { name = "_at_babel_slash_parser"; packageName = "@babel/parser"; - version = "7.14.4"; + version = "7.14.3"; src = fetchurl { - url = "https://registry.npmjs.org/@babel/parser/-/parser-7.14.4.tgz"; - sha512 = "ArliyUsWDUqEGfWcmzpGUzNfLxTdTp6WU4IuP6QFSp9gGfWS6boxFCkJSJ/L4+RG8z/FnIU3WxCk6hPL9SSWeA=="; + url = "https://registry.npmjs.org/@babel/parser/-/parser-7.14.3.tgz"; + sha512 = "7MpZDIfI7sUC5zWo2+foJ50CSI5lcqDehZ0lVgIhSi4bFEk94fLAKlF3Q0nzSQQ+ca0lm+O6G9ztKVBeu8PMRQ=="; }; }; "@babel/runtime-7.14.0" = { @@ -112,13 +112,13 @@ let sha512 = "TsdRgvBFHMyHOOzcP9S6QU0QQtjxlRpEYOy3mcCO5RgmC305ki42aSAmfZEMSSYBla2oZ9BMqYlncBaKmD/7iA=="; }; }; - "@babel/types-7.14.4" = { + "@babel/types-7.14.2" = { name = "_at_babel_slash_types"; packageName = "@babel/types"; - version = "7.14.4"; + version = "7.14.2"; src = fetchurl { - url = "https://registry.npmjs.org/@babel/types/-/types-7.14.4.tgz"; - sha512 = "lCj4aIs0xUefJFQnwwQv2Bxg7Omd6bgquZ6LGC+gGMh6/s5qDVfjuCMlDmYQ15SLsWHd9n+X3E75lKIhl5Lkiw=="; + url = "https://registry.npmjs.org/@babel/types/-/types-7.14.2.tgz"; + sha512 = "SdjAG/3DikRHpUOjxZgnkbR11xUlyDMUFJdvnIgZEE16mqmY0BINMmc4//JMJglEmn6i7sq6p+mGrFWyZ98EEw=="; }; }; "@dabh/diagnostics-2.0.2" = { @@ -130,103 +130,103 @@ let sha512 = "+A1YivoVDNNVCdfozHSR8v/jyuuLTMXwjWuxPFlFlUapXoGc+Gj9mDlTDDfrwl7rXCl2tNZ0kE8sIBO6YOn96Q=="; }; }; - "@eslint/eslintrc-0.4.2" = { + "@eslint/eslintrc-0.4.1" = { name = "_at_eslint_slash_eslintrc"; packageName = "@eslint/eslintrc"; - version = "0.4.2"; + version = "0.4.1"; src = fetchurl { - url = "https://registry.npmjs.org/@eslint/eslintrc/-/eslintrc-0.4.2.tgz"; - sha512 = "8nmGq/4ycLpIwzvhI4tNDmQztZ8sp+hI7cyG8i1nQDhkAbRzHpXPidRAHlNvCZQpJTKw5ItIpMw9RSToGF00mg=="; + url = "https://registry.npmjs.org/@eslint/eslintrc/-/eslintrc-0.4.1.tgz"; + sha512 = "5v7TDE9plVhvxQeWLXDTvFvJBdH6pEsdnl2g/dAptmuFEPedQ4Erq5rsDsX+mvAM610IhNaO2W5V1dOOnDKxkQ=="; }; }; - "@nodelib/fs.scandir-2.1.5" = { + "@nodelib/fs.scandir-2.1.4" = { name = "_at_nodelib_slash_fs.scandir"; packageName = "@nodelib/fs.scandir"; - version = "2.1.5"; + version = "2.1.4"; src = fetchurl { - url = "https://registry.npmjs.org/@nodelib/fs.scandir/-/fs.scandir-2.1.5.tgz"; - sha512 = "vq24Bq3ym5HEQm2NKCr3yXDwjc7vTsEThRDnkp2DK9p1uqLR+DHurm/NOTo0KG7HYHU7eppKZj3MyqYuMBf62g=="; + url = "https://registry.npmjs.org/@nodelib/fs.scandir/-/fs.scandir-2.1.4.tgz"; 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+ url = "https://registry.npmjs.org/@nodelib/fs.walk/-/fs.walk-1.2.6.tgz"; + sha512 = "8Broas6vTtW4GIXTAHDoE32hnN2M5ykgCpWGbuXHQ15vEMqr23pB76e/GZcYsZCHALv50ktd24qhEyKr6wBtow=="; }; }; - "@sentry/core-5.30.0" = { + "@sentry/core-5.27.1" = { name = "_at_sentry_slash_core"; packageName = "@sentry/core"; - version = "5.30.0"; + version = "5.27.1"; src = fetchurl { - url = "https://registry.npmjs.org/@sentry/core/-/core-5.30.0.tgz"; - sha512 = "TmfrII8w1PQZSZgPpUESqjB+jC6MvZJZdLtE/0hZ+SrnKhW3x5WlYLvTXZpcWePYBku7rl2wn1RZu6uT0qCTeg=="; + url = "https://registry.npmjs.org/@sentry/core/-/core-5.27.1.tgz"; + sha512 = "n5CxzMbOAT6HZK4U4cOUAAikkRnnHhMNhInrjfZh7BoiuX1k63Hru2H5xk5WDuEaTTr5RaBA/fqPl7wxHySlwQ=="; }; }; - "@sentry/hub-5.30.0" = { + "@sentry/hub-5.27.1" = { name = "_at_sentry_slash_hub"; packageName = "@sentry/hub"; - version = "5.30.0"; + version = "5.27.1"; src = fetchurl { - url = "https://registry.npmjs.org/@sentry/hub/-/hub-5.30.0.tgz"; - sha512 = "2tYrGnzb1gKz2EkMDQcfLrDTvmGcQPuWxLnJKXJvYTQDGLlEvi2tWz1VIHjunmOvJrB5aIQLhm+dcMRwFZDCqQ=="; 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packageName = "@types/node"; - version = "15.12.2"; + version = "12.12.54"; src = fetchurl { - url = "https://registry.npmjs.org/@types/node/-/node-15.12.2.tgz"; - sha512 = "zjQ69G564OCIWIOHSXyQEEDpdpGl+G348RAKY0XXy9Z5kU9Vzv1GMNnkar/ZJ8dzXB3COzD9Mo9NtRZ4xfgUww=="; + url = "https://registry.npmjs.org/@types/node/-/node-12.12.54.tgz"; + sha512 = "ge4xZ3vSBornVYlDnk7yZ0gK6ChHf/CHB7Gl1I0Jhah8DDnEQqBzgohYG4FX4p81TNirSETOiSyn+y1r9/IR6w=="; }; }; "@types/nopt-3.0.29" = { @@ -400,67 +400,67 @@ let sha512 = "ZFqF6qa48XsPdjXV5Gsz0Zqmux2PerNd3a/ktL45mHpa19cuMi/cL8tcxdAx497yRh+QtYPuofjT9oWw9P7nkA=="; }; }; - "@typescript-eslint/eslint-plugin-4.26.1" = { + "@typescript-eslint/eslint-plugin-4.16.1" = { name = "_at_typescript-eslint_slash_eslint-plugin"; packageName = "@typescript-eslint/eslint-plugin"; - version = "4.26.1"; + version = "4.16.1"; src = fetchurl { - url = "https://registry.npmjs.org/@typescript-eslint/eslint-plugin/-/eslint-plugin-4.26.1.tgz"; - sha512 = "aoIusj/8CR+xDWmZxARivZjbMBQTT9dImUtdZ8tVCVRXgBUuuZyM5Of5A9D9arQPxbi/0rlJLcuArclz/rCMJw=="; 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}; }; - "ajv-8.6.0" = { + "ajv-8.4.0" = { name = "ajv"; packageName = "ajv"; - version = "8.6.0"; + version = "8.4.0"; src = fetchurl { - url = "https://registry.npmjs.org/ajv/-/ajv-8.6.0.tgz"; - sha512 = "cnUG4NSBiM4YFBxgZIj/In3/6KX+rQ2l2YPRVcvAMQGWEPKuXoPIhxzwqh31jA3IPbI4qEOp/5ILI4ynioXsGQ=="; + url = "https://registry.npmjs.org/ajv/-/ajv-8.4.0.tgz"; + sha512 = "7QD2l6+KBSLwf+7MuYocbWvRPdOu63/trReTLu2KFwkgctnub1auoF+Y1WYcm09CTM7quuscrzqmASaLHC/K4Q=="; }; }; "another-json-0.2.0" = { @@ -1246,13 +1246,13 @@ let sha512 = "CFjzYYAi4ThfiQvizrFQevTTXHtnCqWfe7x1AhgEscTz6ZbLbfoLRLPugTQyBth6f8ZERVUSyWHFD/7Wu4t1XQ=="; }; }; - "debug-4.3.2" = { + "debug-4.3.1" = { name = "debug"; packageName = "debug"; - version = "4.3.2"; + version = "4.3.1"; src = fetchurl { - url = "https://registry.npmjs.org/debug/-/debug-4.3.2.tgz"; - sha512 = "mOp8wKcvj7XxC78zLgw/ZA+6TSgkoE2C/ienthhRD298T7UNwAg9diBpLRxC0mOezLl4B0xV7M0cCO6P/O0Xhw=="; + url = "https://registry.npmjs.org/debug/-/debug-4.3.1.tgz"; + sha512 = "doEwdvm4PCeK4K3RQN2ZC2BYUBaxwLARCqZmMjtF8a51J2Rb0xpVloFRnCODwqjpwnAoao4pelN8l3RJdv3gRQ=="; }; }; "decamelize-1.2.0" = { @@ -1408,13 +1408,13 @@ let sha512 = "zk7sgt970kzPks2Bf+dwT/PLzghLnsivb9CcxkvR8Mzr66Olr0Ofd8neSbglHJHaHa2MadfoSdNlKYAaafmWfA=="; }; }; - "domutils-2.7.0" = { + "domutils-2.6.0" = { name = "domutils"; packageName = "domutils"; - version = "2.7.0"; + version = "2.6.0"; src = fetchurl { - url = "https://registry.npmjs.org/domutils/-/domutils-2.7.0.tgz"; - sha512 = "8eaHa17IwJUPAiB+SoTYBo5mCdeMgdcAoXJ59m6DT1vw+5iLS3gNoqYaRowaBKtGVrOF1Jz4yDTgYKLK2kvfJg=="; + url = "https://registry.npmjs.org/domutils/-/domutils-2.6.0.tgz"; + sha512 = "y0BezHuy4MDYxh6OvolXYsH+1EMGmFbwv5FKW7ovwMG6zTPWqNPq3WF9ayZssFq+UlKdffGLbOEaghNdaOm1WA=="; }; }; "dot-prop-5.3.0" = { @@ -1561,15 +1561,6 @@ let sha1 = "1b61c0562190a8dff6ae3bb2cf0200ca130b86d4"; }; }; - "escape-string-regexp-2.0.0" = { - name = "escape-string-regexp"; - packageName = "escape-string-regexp"; - version = "2.0.0"; - src = fetchurl { - url = "https://registry.npmjs.org/escape-string-regexp/-/escape-string-regexp-2.0.0.tgz"; - sha512 = "UpzcLCXolUWcNu5HtVMHYdXJjArjsF9C0aNnquZYY4uW/Vu0miy5YoWvbV345HauVvcAUnpRuhMMcqTcGOY2+w=="; - }; - }; "escape-string-regexp-4.0.0" = { name = "escape-string-regexp"; packageName = "escape-string-regexp"; @@ -1579,13 +1570,13 @@ let sha512 = "TtpcNJ3XAzx3Gq8sWRzJaVajRs0uVxA2YAkdb1jm2YkPz4G6egUFAyA3n5vtEIZefPk5Wa4UXbKuS5fKkJWdgA=="; }; }; - "eslint-7.28.0" = { + "eslint-7.21.0" = { name = "eslint"; packageName = "eslint"; - version = "7.28.0"; + version = "7.21.0"; src = fetchurl { - url = "https://registry.npmjs.org/eslint/-/eslint-7.28.0.tgz"; - sha512 = "UMfH0VSjP0G4p3EWirscJEQ/cHqnT/iuH6oNZOB94nBjWbMnhGEPxsZm1eyIW0C/9jLI0Fow4W5DXLjEI7mn1g=="; + url = "https://registry.npmjs.org/eslint/-/eslint-7.21.0.tgz"; + sha512 = "W2aJbXpMNofUp0ztQaF40fveSsJBjlSCSWpy//gzfTvwC+USs/nceBrKmlJOiM8r1bLwP2EuYkCqArn/6QTIgg=="; }; }; "eslint-scope-5.1.1" = { @@ -1606,15 +1597,6 @@ let sha512 = "w94dQYoauyvlDc43XnGB8lU3Zt713vNChgt4EWwhXAP2XkBvndfxF0AgIqKOOasjPIPzj9JqgwkwbCYD0/V3Zg=="; }; }; - "eslint-utils-3.0.0" = { - name = "eslint-utils"; - packageName = "eslint-utils"; - version = "3.0.0"; - src = fetchurl { - url = "https://registry.npmjs.org/eslint-utils/-/eslint-utils-3.0.0.tgz"; - sha512 = "uuQC43IGctw68pJA1RgbQS8/NP7rch6Cwd4j3ZBtgo4/8Flj4eGE7ZYSZRN3iq5pVUv6GPdW5Z1RFleo84uLDA=="; - }; - }; "eslint-visitor-keys-1.3.0" = { name = "eslint-visitor-keys"; packageName = "eslint-visitor-keys"; @@ -1723,15 +1705,6 @@ let sha512 = "mHJ9O79RqluphRrcw2X/GTh3k9tVv8YcoyY4Kkh4WDMUYKRZUq0h1o0w2rrrxBqM7VoeUVqgb27xlEMXTnYt4g=="; }; }; - "extend-2.0.2" = { - name = "extend"; - packageName = "extend"; - version = "2.0.2"; - src = fetchurl { - url = "https://registry.npmjs.org/extend/-/extend-2.0.2.tgz"; - sha512 = "AgFD4VU+lVLP6vjnlNfF7OeInLTyeyckCNPEsuxz1vi786UuK/nk6ynPuhn/h+Ju9++TQyr5EpLRI14fc1QtTQ=="; - }; - }; "extend-3.0.2" = { name = "extend"; packageName = "extend"; @@ -1750,13 +1723,13 @@ let sha1 = "96918440e3041a7a414f8c52e3c574eb3c3e1e05"; }; }; - "fast-deep-equal-3.1.3" = { + "fast-deep-equal-3.1.1" = { name = "fast-deep-equal"; packageName = "fast-deep-equal"; - version = "3.1.3"; + version = "3.1.1"; src = fetchurl { - url = "https://registry.npmjs.org/fast-deep-equal/-/fast-deep-equal-3.1.3.tgz"; - sha512 = "f3qQ9oQy9j2AhBe/H9VC91wLmKBCCU/gDOnKNAYG5hswO7BLKj09Hc5HYNz9cGI++xlpDCIgDaitVs03ATR84Q=="; + url = "https://registry.npmjs.org/fast-deep-equal/-/fast-deep-equal-3.1.1.tgz"; + sha512 = "8UEa58QDLauDNfpbrX55Q9jrGHThw2ZMdOky5Gl1CDtVeJDPVrG4Jxx1N8jw2gkWaff5UUuX1KJd+9zGe2B+ZA=="; }; }; "fast-glob-3.2.5" = { @@ -1930,13 +1903,13 @@ let sha512 = "1lLKB2Mu3aGP1Q/2eCOx0fNbRMe7XdwktwOruhfqqd0rIJWwN4Dh+E3hrPSlDCXnSR7UtZ1N38rVXm+6+MEhJQ=="; }; }; - "forwarded-0.2.0" = { + "forwarded-0.1.2" = { name = "forwarded"; packageName = "forwarded"; - version = "0.2.0"; + version = "0.1.2"; src = fetchurl { - url = "https://registry.npmjs.org/forwarded/-/forwarded-0.2.0.tgz"; - sha512 = "buRG0fpBtRHSTCOASe6hD258tEubFoRLb4ZNA6NxMVHNw2gOcwHo9wyablzMzOA5z9xA9L1KNjk/Nt6MT9aYow=="; + url = "https://registry.npmjs.org/forwarded/-/forwarded-0.1.2.tgz"; + sha1 = "98c23dab1175657b8c0573e8ceccd91b0ff18c84"; }; }; "fresh-0.5.2" = { @@ -2092,13 +2065,13 @@ let sha512 = "WOBp/EEGUiIsJSp7wcv/y6MO+lV9UoncWqxuFfm8eBwzWNgyfBd6Gz+IeKQ9jCmyhoH99g15M3T+QaVHFjizVA=="; }; }; - "globals-13.9.0" = { + "globals-12.4.0" = { name = "globals"; packageName = "globals"; - version = "13.9.0"; + version = "12.4.0"; src = fetchurl { - url = "https://registry.npmjs.org/globals/-/globals-13.9.0.tgz"; - sha512 = "74/FduwI/JaIrr1H8e71UbDE+5x7pIPs1C2rrwC52SszOo043CsWOZEMW7o2Y58xwm9b+0RBKDxY5n2sUpEFxA=="; + url = "https://registry.npmjs.org/globals/-/globals-12.4.0.tgz"; + sha512 = "BWICuzzDvDoH54NHKCseDanAhE3CeDorgDL5MT6LMXXj2WCnd9UC2szdk4AWLfjdgNBCXLUanXYcpBBKOSWGwg=="; }; }; "globby-11.0.3" = { @@ -2119,13 +2092,13 @@ let sha512 = "R7eWptXuGYxwijs0eV+v3o6+XH1IqVK8dJOEecQfTmkncw9AV4dcw/Dhxi8MdlqPthxxpZyizMzyg8RTmEsG+Q=="; }; }; - "graceful-fs-4.2.6" = { + "graceful-fs-4.2.3" = { name = "graceful-fs"; packageName = "graceful-fs"; - version = "4.2.6"; + version = "4.2.3"; src = fetchurl { - url = "https://registry.npmjs.org/graceful-fs/-/graceful-fs-4.2.6.tgz"; - sha512 = "nTnJ528pbqxYanhpDYsi4Rd8MAeaBA67+RZ10CM1m3bTAVFEDcd5AuA4a6W5YkGZ1iNXHzZz8T6TBKLeBuNriQ=="; + url = "https://registry.npmjs.org/graceful-fs/-/graceful-fs-4.2.3.tgz"; + sha512 = "a30VEBm4PEdx1dRB7MFK7BejejvCvBronbLjht+sHuGYj8PHs7M/5Z+rt5lw551vZ7yfTCj4Vuyy3mSJytDWRQ=="; }; }; "har-schema-2.0.0" = { @@ -2299,15 +2272,6 @@ let sha512 = "EkYm5BcKUGiduxzSt3Eppko+PiNWNEpa4ySk9vTC6wDsQJW9rHSa+UhGNJoRYp7bz6Ht1eaRIa6QaJqO5rCFbA=="; }; }; - "iconv-2.3.5" = { - name = "iconv"; - packageName = "iconv"; - version = "2.3.5"; - src = fetchurl { - url = "https://registry.npmjs.org/iconv/-/iconv-2.3.5.tgz"; - sha512 = "U5ajDbtDfadp7pvUMC0F2XbkP5vQn9Xrwa6UptePl+cK8EILxapAt3sXers9B3Gxagk+zVjL2ELKuzQvyqOwug=="; - }; - }; "iconv-lite-0.4.24" = { name = "iconv-lite"; packageName = "iconv-lite"; @@ -2407,6 +2371,15 @@ let sha1 = "633c2c83e3da42a502f52466022480f4208261de"; }; }; + "inherits-2.0.4" = { + name = "inherits"; + packageName = "inherits"; + version = "2.0.4"; + src = fetchurl { + url = "https://registry.npmjs.org/inherits/-/inherits-2.0.4.tgz"; + sha512 = "k/vGaX4/Yla3WzyMCvTQOXYeIHvqOKtnqBduzTHpzpQZzAskKMhZ2K+EnBiSM9zGSoIFeMpXKxa4dYeZIQqewQ=="; + }; + }; "ini-1.3.7" = { name = "ini"; packageName = "ini"; @@ -2434,16 +2407,6 @@ let sha512 = "HtszKchBQTcqw1DC09uD7i7vvMayHGM1OCo6AHt5pkgZEyo99ClhHTMJdf+Ezc9ovuNNxcH89QfyclGthjZJOw=="; }; }; - "irc-git+https://matrix-org@github.com/matrix-org/node-irc.git#9028c2197c216dd8e6fc2cb3cc07ce2d6bf741a7" = { - name = "irc"; - packageName = "irc"; - version = "0.3.12"; - src = fetchgit { - url = "https://matrix-org@github.com/matrix-org/node-irc.git"; - rev = "9028c2197c216dd8e6fc2cb3cc07ce2d6bf741a7"; - sha256 = "0785d44389d34d7e7c614437c8c8e108f32b5d5022e6f29c47a6a40090d277a7"; - }; - }; "is-arrayish-0.2.1" = { name = "is-arrayish"; packageName = "is-arrayish"; @@ -2741,22 +2704,22 @@ let sha512 = "uu1F/L1o5Y6LzPVSVZXNOoD/KXpJue9aeLRd0sM9uMXfZvzomB0WxVamWb5ue8kA2vVWEmW7EG+A5n3f1kqHKg=="; }; }; - "jasmine-3.7.0" = { + "jasmine-3.6.2" = { name = "jasmine"; packageName = "jasmine"; - version = "3.7.0"; + version = "3.6.2"; src = fetchurl { - url = "https://registry.npmjs.org/jasmine/-/jasmine-3.7.0.tgz"; - sha512 = "wlzGQ+cIFzMEsI+wDqmOwvnjTvolLFwlcpYLCqSPPH0prOQaW3P+IzMhHYn934l1imNvw07oCyX+vGUv3wmtSQ=="; + url = "https://registry.npmjs.org/jasmine/-/jasmine-3.6.2.tgz"; + sha512 = "Uc0o2MRnC8TS1MjDrB8jE1umKEo2mflzGvdg0Ncs+yuLtOJ+uz/Wz8VmGsNGtuASr8+E0LDgPkOpvdoC76m5WQ=="; }; }; - "jasmine-core-3.7.1" = { + "jasmine-core-3.6.0" = { name = "jasmine-core"; packageName = "jasmine-core"; - version = "3.7.1"; + version = "3.6.0"; src = fetchurl { - url = "https://registry.npmjs.org/jasmine-core/-/jasmine-core-3.7.1.tgz"; - sha512 = "DH3oYDS/AUvvr22+xUBW62m1Xoy7tUlY1tsxKEJvl5JeJ7q8zd1K5bUwiOxdH+erj6l2vAMM3hV25Xs9/WrmuQ=="; + url = "https://registry.npmjs.org/jasmine-core/-/jasmine-core-3.6.0.tgz"; + sha512 = "8uQYa7zJN8hq9z+g8z1bqCfdC8eoDAeVnM5sfqs7KHv9/ifoJ500m018fpFc7RDaO6SWCLCXwo/wPSNcdYTgcw=="; }; }; "js-tokens-4.0.0" = { @@ -2768,13 +2731,13 @@ let sha512 = "RdJUflcE3cUzKiMqQgsCu06FPu9UdIJO0beYbPhHN4k6apgJtifcoCtT9bcxOpYBtpD2kCM6Sbzg4CausW/PKQ=="; }; }; - "js-yaml-3.14.1" = { + "js-yaml-3.14.0" = { name = "js-yaml"; packageName = "js-yaml"; - version = "3.14.1"; + version = "3.14.0"; src = fetchurl { - url = "https://registry.npmjs.org/js-yaml/-/js-yaml-3.14.1.tgz"; - sha512 = "okMH7OXXJ7YrN9Ok3/SXrnu4iX9yOk+25nqX4imS2npuvTYDmo/QEZoqwZkYaIDk3jVvBOTOIEgEhaLOynBS9g=="; + url = "https://registry.npmjs.org/js-yaml/-/js-yaml-3.14.0.tgz"; + sha512 = "/4IbIeHcD9VMHFqDR/gQ7EdZdLimOvW2DdcxFjdyyZ9NsbS+ccrXqVWDtab/lRl5AlUqmpBx8EhPaWR+OtY17A=="; }; }; "js-yaml-4.1.0" = { @@ -2993,15 +2956,6 @@ let sha1 = "fb030917f86a3134e5bc9bec0d69e0013ddfedb2"; }; }; - "lodash.merge-4.6.2" = { - name = "lodash.merge"; - packageName = "lodash.merge"; - version = "4.6.2"; - src = fetchurl { - url = "https://registry.npmjs.org/lodash.merge/-/lodash.merge-4.6.2.tgz"; - sha512 = "0KpjqXRVvrYyCsX1swR/XTK0va6VQkQM6MNo7PqW77ByjAhoARA8EfrP1N4+KlKj8YS0ZUCtRT/YUuhyYDujIQ=="; - }; - }; "lodash.truncate-4.4.2" = { name = "lodash.truncate"; packageName = "lodash.truncate"; @@ -3155,13 +3109,13 @@ let sha512 = "JFIMJPNGGqi0myzIlN94SQReUbCrWi1TW5PZih1OGXzUj2wXYz3puktV/f64HZYn6D1ZKcwxZdLuNCG8cRuCyw=="; }; }; - "matrix-org-irc-1.0.0-alpha4" = { + "matrix-org-irc-1.2.0" = { name = "matrix-org-irc"; packageName = "matrix-org-irc"; - version = "1.0.0-alpha4"; + version = "1.2.0"; src = fetchurl { - url = "https://registry.npmjs.org/matrix-org-irc/-/matrix-org-irc-1.0.0-alpha4.tgz"; - sha512 = "2wKzQSpITrG9vChfw9d0goDcQZgKdaL7hgPzQwaybO9NF96HLarXFhznaFtngJiaaBAN52jkEetsQKV/lEfPqA=="; + url = "https://registry.npmjs.org/matrix-org-irc/-/matrix-org-irc-1.2.0.tgz"; + sha512 = "RnfeR9FimJJD/iOWw0GiV7NIPRmBJobvFasUgjVmGre9A4qJ9klHIDOlQ5vXIoPPMjzG8XXuAf4WHgMCNBfZkQ=="; }; }; "media-typer-0.3.0" = { @@ -3227,22 +3181,22 @@ let sha512 = "x0Vn8spI+wuJ1O6S7gnbaQg8Pxh4NNHb7KSINmEWKiPE4RKOplvijn+NkmYmmRgP68mc70j2EbeTFRsrswaQeg=="; }; }; - "mime-db-1.48.0" = { + "mime-db-1.47.0" = { name = "mime-db"; packageName = "mime-db"; - version = "1.48.0"; + version = "1.47.0"; src = fetchurl { - url = "https://registry.npmjs.org/mime-db/-/mime-db-1.48.0.tgz"; - sha512 = "FM3QwxV+TnZYQ2aRqhlKBMHxk10lTbMt3bBkMAp54ddrNeVSfcQYOOKuGuy3Ddrm38I04If834fOUSq1yzslJQ=="; + url = "https://registry.npmjs.org/mime-db/-/mime-db-1.47.0.tgz"; + sha512 = "QBmA/G2y+IfeS4oktet3qRZ+P5kPhCKRXxXnQEudYqUaEioAU1/Lq2us3D/t1Jfo4hE9REQPrbB7K5sOczJVIw=="; }; }; - "mime-types-2.1.31" = { + "mime-types-2.1.30" = { name = "mime-types"; packageName = "mime-types"; - version = "2.1.31"; + version = "2.1.30"; src = fetchurl { - url = "https://registry.npmjs.org/mime-types/-/mime-types-2.1.31.tgz"; - sha512 = "XGZnNzm3QvgKxa8dpzyhFTHmpP3l5YNusmne07VUOXxou9CqUqYa/HBy124RqtVh/O2pECas/MOcsDgpilPOPg=="; + url = "https://registry.npmjs.org/mime-types/-/mime-types-2.1.30.tgz"; + sha512 = "crmjA4bLtR8m9qLpHvgxSChT+XoSlZi8J4n/aIdn3z92e/U47Z0V/yl+Wh9W046GgFVAmoNR/fmdbZYcSSIUeg=="; }; }; "mimic-response-1.0.1" = { @@ -3344,15 +3298,6 @@ let sha512 = "sGkPx+VjMtmA6MX27oA4FBFELFCZZ4S4XqeGOXCv68tT+jb3vk/RyaKWP0PTKyWtmLSM0b+adUTEvbs1PEaH2w=="; }; }; - "nan-2.14.2" = { - name = "nan"; - packageName = "nan"; - version = "2.14.2"; - src = fetchurl { - url = "https://registry.npmjs.org/nan/-/nan-2.14.2.tgz"; - sha512 = "M2ufzIiINKCuDfBSAUr1vWQ+vuVcA9kqx8JJUsbQi6yf1uGRyb7HfpdfUr5qLXf3B/t8dPvcjhKMmlfnP47EzQ=="; - }; - }; "nanoid-3.1.23" = { name = "nanoid"; packageName = "nanoid"; @@ -3542,15 +3487,6 @@ let sha512 = "5DXOiRKwuSEcQ/l0kGCF6Q3jcADFv5tSmRaJck/OqkVFcOzutB134KRSfF0xDrL39MNnqxbHBbUUcjZIhTgb2g=="; }; }; - "optimist-0.3.7" = { - name = "optimist"; - packageName = "optimist"; - version = "0.3.7"; - src = fetchurl { - url = "https://registry.npmjs.org/optimist/-/optimist-0.3.7.tgz"; - sha1 = "c90941ad59e4273328923074d2cf2e7cbc6ec0d9"; - }; - }; "optionator-0.9.1" = { name = "optionator"; packageName = "optionator"; @@ -3722,13 +3658,13 @@ let sha512 = "ojmeN0qd+y0jszEtoY48r0Peq5dwMEkIlCOu6Q5f41lfkswXuKtYrhgoTpLnyIcHm24Uhqx+5Tqm2InSwLhE6Q=="; }; }; - "path-parse-1.0.7" = { + "path-parse-1.0.6" = { name = "path-parse"; packageName = "path-parse"; - version = "1.0.7"; + version = "1.0.6"; src = fetchurl { - url = "https://registry.npmjs.org/path-parse/-/path-parse-1.0.7.tgz"; - sha512 = "LDJzPVEEEPR+y48z93A0Ed0yXb8pAByGWo/k5YYdYgpY2/2EsOsksJrq7lOHxryrVOn1ejG6oAp8ahvOIQD8sw=="; + url = "https://registry.npmjs.org/path-parse/-/path-parse-1.0.6.tgz"; + sha512 = "GSmOT2EbHrINBf9SR7CDELwlJ8AENk3Qn7OikK4nFYAu3Ote2+JYNVvkpAEQm3/TLNEJFD/xZJjzyxg3KBWOzw=="; }; }; "path-to-regexp-0.1.7" = { @@ -3830,13 +3766,22 @@ let sha512 = "YmuA56alyBq7M59vxVBfPJrGSozru8QAdoNlWuW3cz8l+UX3cWge0vTvjKhsSHSJpo3Bom8/Mm6hf0TR5GY0+w=="; }; }; - "picomatch-2.3.0" = { + "picomatch-2.2.2" = { name = "picomatch"; packageName = "picomatch"; - version = "2.3.0"; + version = "2.2.2"; src = fetchurl { - url = "https://registry.npmjs.org/picomatch/-/picomatch-2.3.0.tgz"; - sha512 = "lY1Q/PiJGC2zOv/z391WOTD+Z02bCgsFfvxoXXf6h7kv9o+WmsmzYqrAwY63sNgOxE4xEdq0WyUnXfKeBrSvYw=="; + url = "https://registry.npmjs.org/picomatch/-/picomatch-2.2.2.tgz"; + sha512 = "q0M/9eZHzmr0AulXyPwNfZjtwZ/RBZlbN3K3CErVrk50T2ASYI7Bye0EvekFY3IP1Nt2DHu0re+V2ZHIpMkuWg=="; + }; + }; + "picomatch-2.2.3" = { + name = "picomatch"; + packageName = "picomatch"; + version = "2.2.3"; + src = fetchurl { + url = "https://registry.npmjs.org/picomatch/-/picomatch-2.2.3.tgz"; + sha512 = "KpELjfwcCDUb9PeigTs2mBJzXUPzAuP2oPcA989He8Rte0+YUAjw1JVedDhuTKPkHjSYzMN3npC9luThGYEKdg=="; }; }; "pify-3.0.0" = { @@ -3965,13 +3910,13 @@ let sha512 = "jT9VccZCWrJWXdyEtQddCDszYsiuWj5T0ekrPszi/WEegj3IZy6Mm09iOOVM86A4IKMWq8hZkT2dD9MaSe+sng=="; }; }; - "proxy-addr-2.0.7" = { + "proxy-addr-2.0.6" = { name = "proxy-addr"; packageName = "proxy-addr"; - version = "2.0.7"; + version = "2.0.6"; src = fetchurl { - url = "https://registry.npmjs.org/proxy-addr/-/proxy-addr-2.0.7.tgz"; - sha512 = "llQsMLSUDUPT44jdrU/O37qlnifitDP+ZwrmmZcoSKyLKvtZxpyV0n2/bD/N4tBAAZ/gJEdZU7KMraoK1+XYAg=="; + url = "https://registry.npmjs.org/proxy-addr/-/proxy-addr-2.0.6.tgz"; + sha512 = "dh/frvCBVmSsDYzw6n926jv974gddhkFPfiN8hPOi30Wax25QZyZEGveluCgliBnqmuM+UJmBErbAUFIoDbjOw=="; }; }; "proxyquire-1.8.0" = { @@ -4154,22 +4099,13 @@ let sha512 = "cMhu7c/8rdhkHXWsY+osBhfSy0JikwpHK/5+imo+LpeasTF8ouErHrlYkwT0++njiyuDvc7OFY5T3ukvZ8qmFQ=="; }; }; - "rebuild-0.1.2" = { - name = "rebuild"; - packageName = "rebuild"; - version = "0.1.2"; - src = fetchurl { - url = "https://registry.npmjs.org/rebuild/-/rebuild-0.1.2.tgz"; - sha1 = "03acdea5515130b479092746e093daf8cf883e93"; - }; - }; - "regenerator-runtime-0.13.8" = { + "regenerator-runtime-0.13.7" = { name = "regenerator-runtime"; packageName = "regenerator-runtime"; - version = "0.13.8"; + version = "0.13.7"; src = fetchurl { - url = "https://registry.npmjs.org/regenerator-runtime/-/regenerator-runtime-0.13.8.tgz"; - sha512 = "o/ASGwgZ6UiVjspr4YnzHKF1NbBdX+mCPkSeymofk/d7I+csCYn3ZgZMMVtXeecpT8DBiI2nAlYkHd+xNCqu4A=="; + url = "https://registry.npmjs.org/regenerator-runtime/-/regenerator-runtime-0.13.7.tgz"; + sha512 = "a54FxoJDIr27pgf7IgeQGxmqUNYrcV338lf/6gH456HZ/PhX+5BcwHXG9ajESmwe6WRO0tAzRUrRmNONWgkrew=="; }; }; "regexpp-3.1.0" = { @@ -4487,13 +4423,13 @@ let sha512 = "q5XPytqFEIKHkGdiMIrY10mvLRvnQh42/+GoBlFW3b2LXLE2xxJpZFdm94we0BaoV3RwJyGqg5wS7epxTv0Zvw=="; }; }; - "signal-exit-3.0.3" = { + "signal-exit-3.0.2" = { name = "signal-exit"; packageName = "signal-exit"; - version = "3.0.3"; + version = "3.0.2"; src = fetchurl { - url = "https://registry.npmjs.org/signal-exit/-/signal-exit-3.0.3.tgz"; - sha512 = "VUJ49FC8U1OxwZLxIbTTrDvLnf/6TDgxZcK8wxR8zs13xpx7xbG60ndBlhNrFi2EMuFRoeDoJO7wthSLq42EjA=="; + url = "https://registry.npmjs.org/signal-exit/-/signal-exit-3.0.2.tgz"; + sha1 = "b5fdc08f1287ea1178628e415e25132b73646c6d"; }; }; "simple-swizzle-0.2.2" = { @@ -4586,13 +4522,13 @@ let sha512 = "cbqHunsQWnJNE6KhVSMsMeH5H/L9EpymbzqTQ3uLwNCLZ1Q481oWaofqH7nO6V07xlXwY6PhQdQ2IedWx/ZK4Q=="; }; }; - "spdx-license-ids-3.0.9" = { + "spdx-license-ids-3.0.8" = { name = "spdx-license-ids"; packageName = "spdx-license-ids"; - version = "3.0.9"; + version = "3.0.8"; src = fetchurl { - url = "https://registry.npmjs.org/spdx-license-ids/-/spdx-license-ids-3.0.9.tgz"; - sha512 = "Ki212dKK4ogX+xDo4CtOZBVIwhsKBEfsEEcwmJfLQzirgc2jIWdzg40Unxz/HzEUqM1WFzVlQSMF9kZZ2HboLQ=="; + url = "https://registry.npmjs.org/spdx-license-ids/-/spdx-license-ids-3.0.8.tgz"; + sha512 = "NDgA96EnaLSvtbM7trJj+t1LUR3pirkDCcz9nOUlPb5DMBGsH7oES6C3hs3j7R9oHEa1EMvReS/BUAIT5Tcr0g=="; }; }; "split2-3.2.2" = { @@ -4883,13 +4819,13 @@ let sha512 = "XrHUvV5HpdLmIj4uVMxHggLbFSZYIn7HEWsqePZcI50pco+MPqJ50wMGY794X7AOOhxOBAjbkqfAbEe/QMp2Lw=="; }; }; - "tslib-1.14.1" = { + "tslib-1.11.1" = { name = "tslib"; packageName = "tslib"; - version = "1.14.1"; + version = "1.11.1"; src = fetchurl { - url = "https://registry.npmjs.org/tslib/-/tslib-1.14.1.tgz"; - sha512 = "Xni35NKzjgMrwevysHTCArtLDpPvye8zV/0E4EyYn43P7/7qvQwPh9BGkHewbMulVntbigmcT7rdX3BNo9wRJg=="; + url = "https://registry.npmjs.org/tslib/-/tslib-1.11.1.tgz"; + sha512 = "aZW88SY8kQbU7gpV19lN24LtXh/yD4ZZg6qieAJDDg+YBsJcSmLGK9QpnUjAKVG/xefmvJGd1WUmfpT/g6AJGA=="; }; }; "tsutils-3.21.0" = { @@ -4928,15 +4864,6 @@ let sha512 = "XleUoc9uwGXqjWwXaUTZAmzMcFZ5858QA2vvx1Ur5xIcixXIP+8LnFDgRplU30us6teqdlskFfu+ae4K79Ooew=="; }; }; - "type-fest-0.20.2" = { - name = "type-fest"; - packageName = "type-fest"; - version = "0.20.2"; - src = fetchurl { - url = "https://registry.npmjs.org/type-fest/-/type-fest-0.20.2.tgz"; - sha512 = "Ne+eE4r0/iWnpAxD852z3A+N0Bt5RN//NjJwRd2VFHEmrywxf5vsZlh4R6lixl6B+wz/8d+maTSAkN1FIkI3LQ=="; - }; - }; "type-fest-0.8.1" = { name = "type-fest"; packageName = "type-fest"; @@ -4964,13 +4891,13 @@ let sha512 = "zdu8XMNEDepKKR+XYOXAVPtWui0ly0NtohUscw+UmaHiAWT8hrV1rr//H6V+0DvJ3OQ19S979M0laLfX8rm82Q=="; }; }; - "typescript-4.3.2" = { + "typescript-4.2.3" = { name = "typescript"; packageName = "typescript"; - version = "4.3.2"; + version = "4.2.3"; src = fetchurl { - url = "https://registry.npmjs.org/typescript/-/typescript-4.3.2.tgz"; - sha512 = "zZ4hShnmnoVnAHpVHWpTcxdv7dWP60S2FsydQLV8V5PbS3FifjWFFRiHSWpDJahly88PRyV5teTSLoq4eG7mKw=="; + url = "https://registry.npmjs.org/typescript/-/typescript-4.2.3.tgz"; + sha512 = "qOcYwxaByStAWrBf4x0fibwZvMRG+r4cQoTjbPtUlrWjBHbmCAww1i448U0GJ+3cNNEtebDteo/cHOR3xJ4wEw=="; }; }; "undefsafe-2.0.3" = { @@ -5027,13 +4954,13 @@ let sha512 = "Yld6Z0RyCYGB6ckIjffGOSOmHXj1gMeE7aROz4MG+XMkmixBX4jUngrGXNYz7wPKBmtoD4MnBa2Anu7RSKht/A=="; }; }; - "uri-js-4.4.1" = { + "uri-js-4.2.2" = { name = "uri-js"; packageName = "uri-js"; - version = "4.4.1"; + version = "4.2.2"; src = fetchurl { - url = "https://registry.npmjs.org/uri-js/-/uri-js-4.4.1.tgz"; - sha512 = "7rKUyy33Q1yc98pQ1DAmLtwX109F7TIfWlW1Ydo8Wl1ii1SeHieeh0HHfPeL2fMXK6z0s8ecKs9frCuLJvndBg=="; + url = "https://registry.npmjs.org/uri-js/-/uri-js-4.2.2.tgz"; + sha512 = "KY9Frmirql91X2Qgjry0Wd4Y+YTdrdZheS8TFwvkbLWf/G5KNJDCh6pKL5OZctEW4+0Baa5idK2ZQuELRwPznQ=="; }; }; "url-parse-lax-3.0.0" = { @@ -5189,15 +5116,6 @@ let sha512 = "Hz/mrNwitNRh/HUAtM/VT/5VH+ygD6DV7mYKZAtHOrbs8U7lvPS6xf7EJKMF0uW1KJCl0H701g3ZGus+muE5vQ=="; }; }; - "wordwrap-0.0.3" = { - name = "wordwrap"; - packageName = "wordwrap"; - version = "0.0.3"; - src = fetchurl { - url = "https://registry.npmjs.org/wordwrap/-/wordwrap-0.0.3.tgz"; - sha1 = "a3d5da6cd5c0bc0008d37234bbaf1bed63059107"; - }; - }; "wrap-ansi-5.1.0" = { name = "wrap-ansi"; packageName = "wrap-ansi"; @@ -5307,17 +5225,11 @@ let }; }; }; -in -{ - "matrix-appservice-irc-git+https://github.com/matrix-org/matrix-appservice-irc.git#0.26.1" = nodeEnv.buildNodePackage { + args = { name = "matrix-appservice-irc"; packageName = "matrix-appservice-irc"; - version = "0.26.1"; - src = fetchgit { - url = "https://github.com/matrix-org/matrix-appservice-irc.git"; - rev = "4edab6f7b02e0f08e7c3b24f72441be25b30b5b8"; - sha256 = "3715ba3e80d79cea98ceb108e1df87b4d864d4f9149f147df0f3b78c691f00d6"; - }; + version = "0.30.0"; + src = ./.; dependencies = [ sources."@babel/code-frame-7.12.11" (sources."@babel/generator-7.14.3" // { @@ -5329,18 +5241,8 @@ in sources."@babel/helper-get-function-arity-7.12.13" sources."@babel/helper-split-export-declaration-7.12.13" sources."@babel/helper-validator-identifier-7.14.0" - (sources."@babel/highlight-7.14.0" // { - dependencies = [ - sources."ansi-styles-3.2.1" - sources."chalk-2.4.2" - sources."color-convert-1.9.3" - sources."color-name-1.1.3" - sources."escape-string-regexp-1.0.5" - sources."has-flag-3.0.0" - sources."supports-color-5.5.0" - ]; - }) - sources."@babel/parser-7.14.4" + sources."@babel/highlight-7.14.0" + sources."@babel/parser-7.14.3" sources."@babel/runtime-7.14.0" (sources."@babel/template-7.12.13" // { dependencies = [ @@ -5353,37 +5255,36 @@ in sources."globals-11.12.0" ]; }) - sources."@babel/types-7.14.4" + sources."@babel/types-7.14.2" sources."@dabh/diagnostics-2.0.2" - (sources."@eslint/eslintrc-0.4.2" // { + (sources."@eslint/eslintrc-0.4.1" // { dependencies = [ sources."ignore-4.0.6" - sources."strip-json-comments-3.1.1" ]; }) - sources."@nodelib/fs.scandir-2.1.5" - sources."@nodelib/fs.stat-2.0.5" - sources."@nodelib/fs.walk-1.2.7" - sources."@sentry/core-5.30.0" - sources."@sentry/hub-5.30.0" - sources."@sentry/minimal-5.30.0" - sources."@sentry/node-5.30.0" - sources."@sentry/tracing-5.30.0" - sources."@sentry/types-5.30.0" - sources."@sentry/utils-5.30.0" + sources."@nodelib/fs.scandir-2.1.4" + sources."@nodelib/fs.stat-2.0.4" + sources."@nodelib/fs.walk-1.2.6" + sources."@sentry/core-5.27.1" + sources."@sentry/hub-5.27.1" + sources."@sentry/minimal-5.27.1" + sources."@sentry/node-5.27.1" + sources."@sentry/tracing-5.27.1" + sources."@sentry/types-5.27.1" + sources."@sentry/utils-5.27.1" sources."@sindresorhus/is-0.14.0" sources."@szmarczak/http-timer-1.1.2" - sources."@types/bluebird-3.5.35" + sources."@types/bluebird-3.5.32" sources."@types/body-parser-1.19.0" sources."@types/connect-3.4.34" - sources."@types/express-4.17.12" - sources."@types/express-serve-static-core-4.17.21" + sources."@types/express-4.17.8" + sources."@types/express-serve-static-core-4.17.19" sources."@types/extend-3.0.1" sources."@types/he-1.1.1" sources."@types/json-schema-7.0.7" sources."@types/mime-1.3.2" sources."@types/nedb-1.8.11" - sources."@types/node-15.12.2" + sources."@types/node-12.12.54" sources."@types/nopt-3.0.29" sources."@types/pg-8.6.0" sources."@types/qs-6.9.6" @@ -5395,25 +5296,25 @@ in ]; }) sources."@types/serve-static-1.13.9" - (sources."@typescript-eslint/eslint-plugin-4.26.1" // { + (sources."@typescript-eslint/eslint-plugin-4.16.1" // { dependencies = [ sources."lru-cache-6.0.0" sources."semver-7.3.5" sources."yallist-4.0.0" ]; }) - sources."@typescript-eslint/experimental-utils-4.26.1" - sources."@typescript-eslint/parser-4.26.1" - sources."@typescript-eslint/scope-manager-4.26.1" - sources."@typescript-eslint/types-4.26.1" - (sources."@typescript-eslint/typescript-estree-4.26.1" // { + sources."@typescript-eslint/experimental-utils-4.16.1" + sources."@typescript-eslint/parser-4.16.1" + sources."@typescript-eslint/scope-manager-4.16.1" + sources."@typescript-eslint/types-4.16.1" + (sources."@typescript-eslint/typescript-estree-4.16.1" // { dependencies = [ sources."lru-cache-6.0.0" sources."semver-7.3.5" sources."yallist-4.0.0" ]; }) - sources."@typescript-eslint/visitor-keys-4.26.1" + sources."@typescript-eslint/visitor-keys-4.16.1" sources."abbrev-1.1.1" sources."accepts-1.3.7" sources."acorn-7.4.1" @@ -5421,14 +5322,14 @@ in sources."agent-base-6.0.2" sources."ajv-6.12.6" sources."another-json-0.2.0" - (sources."ansi-align-3.0.0" // { - dependencies = [ - sources."string-width-3.1.0" - ]; - }) + sources."ansi-align-3.0.0" sources."ansi-colors-4.1.1" sources."ansi-regex-4.1.0" - sources."ansi-styles-4.3.0" + (sources."ansi-styles-4.3.0" // { + dependencies = [ + sources."color-convert-2.0.1" + ]; + }) sources."anymatch-3.1.2" sources."append-transform-1.0.0" sources."archy-1.0.0" @@ -5453,12 +5354,18 @@ in (sources."body-parser-1.19.0" // { dependencies = [ sources."debug-2.6.9" + sources."iconv-lite-0.4.24" sources."ms-2.0.0" ]; }) (sources."boxen-4.2.0" // { dependencies = [ + sources."ansi-regex-5.0.0" sources."chalk-3.0.0" + sources."has-flag-4.0.0" + sources."string-width-4.2.2" + sources."strip-ansi-6.0.0" + sources."supports-color-7.2.0" ]; }) sources."brace-expansion-1.1.11" @@ -5473,35 +5380,30 @@ in sources."lowercase-keys-2.0.0" ]; }) - (sources."caching-transform-3.0.2" // { - dependencies = [ - sources."make-dir-2.1.0" - sources."pify-4.0.1" - sources."write-file-atomic-2.4.3" - ]; - }) + sources."caching-transform-3.0.2" sources."call-bind-1.0.2" sources."callsites-3.1.0" sources."camelcase-5.3.1" sources."caseless-0.12.0" - sources."chalk-4.1.1" + (sources."chalk-2.4.2" // { + dependencies = [ + sources."ansi-styles-3.2.1" + sources."escape-string-regexp-1.0.5" + sources."supports-color-5.5.0" + ]; + }) sources."chardet-1.3.0" sources."chokidar-3.5.1" sources."ci-info-2.0.0" sources."cli-boxes-2.2.1" - (sources."cliui-5.0.0" // { - dependencies = [ - sources."string-width-3.1.0" - ]; - }) + sources."cliui-5.0.0" sources."clone-response-1.0.2" - (sources."color-3.0.0" // { + sources."color-3.0.0" + (sources."color-convert-1.9.3" // { dependencies = [ - sources."color-convert-1.9.3" sources."color-name-1.1.3" ]; }) - sources."color-convert-2.0.1" sources."color-name-1.1.4" sources."color-string-1.5.5" sources."colorette-1.2.2" @@ -5510,7 +5412,12 @@ in sources."combined-stream-1.0.8" sources."commondir-1.0.1" sources."concat-map-0.0.1" - sources."configstore-5.0.1" + (sources."configstore-5.0.1" // { + dependencies = [ + sources."make-dir-3.1.0" + sources."write-file-atomic-3.0.3" + ]; + }) sources."content-disposition-0.5.3" sources."content-type-1.0.4" sources."convert-source-map-1.7.0" @@ -5519,14 +5426,13 @@ in sources."core-util-is-1.0.2" (sources."cp-file-6.2.0" // { dependencies = [ - sources."make-dir-2.1.0" sources."pify-4.0.1" ]; }) sources."cross-spawn-7.0.3" sources."crypto-random-string-2.0.0" sources."dashdash-1.14.1" - sources."debug-4.3.2" + sources."debug-4.3.1" sources."decamelize-1.2.0" sources."decompress-response-3.3.0" sources."deep-extend-0.6.0" @@ -5546,7 +5452,7 @@ in }) sources."domelementtype-2.2.0" sources."domhandler-3.3.0" - (sources."domutils-2.7.0" // { + (sources."domutils-2.6.0" // { dependencies = [ sources."domhandler-4.2.0" ]; @@ -5555,7 +5461,7 @@ in sources."duplexer3-0.1.4" sources."ecc-jsbn-0.1.2" sources."ee-first-1.1.1" - sources."emoji-regex-7.0.3" + sources."emoji-regex-8.0.0" sources."enabled-2.0.0" sources."encodeurl-1.0.2" sources."end-of-stream-1.4.4" @@ -5569,26 +5475,26 @@ in sources."es6-error-4.1.1" sources."escape-goat-2.1.1" sources."escape-html-1.0.3" - sources."escape-string-regexp-2.0.0" - (sources."eslint-7.28.0" // { + sources."escape-string-regexp-4.0.0" + (sources."eslint-7.21.0" // { dependencies = [ sources."ansi-regex-5.0.0" - sources."escape-string-regexp-4.0.0" - (sources."eslint-utils-2.1.0" // { - dependencies = [ - sources."eslint-visitor-keys-1.3.0" - ]; - }) + sources."chalk-4.1.1" + sources."has-flag-4.0.0" sources."ignore-4.0.6" sources."lru-cache-6.0.0" sources."semver-7.3.5" sources."strip-ansi-6.0.0" - sources."strip-json-comments-3.1.1" + sources."supports-color-7.2.0" sources."yallist-4.0.0" ]; }) sources."eslint-scope-5.1.1" - sources."eslint-utils-3.0.0" + (sources."eslint-utils-2.1.0" // { + dependencies = [ + sources."eslint-visitor-keys-1.3.0" + ]; + }) sources."eslint-visitor-keys-2.1.0" (sources."espree-7.3.1" // { dependencies = [ @@ -5617,9 +5523,9 @@ in sources."ms-2.0.0" ]; }) - sources."extend-2.0.2" + sources."extend-3.0.2" sources."extsprintf-1.3.0" - sources."fast-deep-equal-3.1.3" + sources."fast-deep-equal-3.1.1" sources."fast-glob-3.2.5" sources."fast-json-stable-stringify-2.1.0" sources."fast-levenshtein-2.0.6" @@ -5636,12 +5542,7 @@ in sources."ms-2.0.0" ]; }) - (sources."find-cache-dir-2.1.0" // { - dependencies = [ - sources."make-dir-2.1.0" - sources."pify-4.0.1" - ]; - }) + sources."find-cache-dir-2.1.0" sources."find-up-3.0.0" sources."flat-cache-3.0.4" sources."flatted-3.1.1" @@ -5656,7 +5557,7 @@ in }) sources."forever-agent-0.6.1" sources."form-data-2.3.3" - sources."forwarded-0.2.0" + sources."forwarded-0.1.2" sources."fresh-0.5.2" sources."fs.realpath-1.0.0" sources."fsevents-2.3.2" @@ -5672,18 +5573,18 @@ in sources."glob-parent-5.1.2" sources."glob-to-regexp-0.4.1" sources."global-dirs-2.1.0" - (sources."globals-13.9.0" // { - dependencies = [ - sources."type-fest-0.20.2" - ]; - }) + sources."globals-12.4.0" sources."globby-11.0.3" sources."got-9.6.0" - sources."graceful-fs-4.2.6" + sources."graceful-fs-4.2.3" sources."har-schema-2.0.0" - sources."har-validator-5.1.5" + (sources."har-validator-5.1.5" // { + dependencies = [ + sources."ajv-6.12.6" + ]; + }) sources."has-1.0.3" - sources."has-flag-4.0.0" + sources."has-flag-3.0.0" sources."has-symbols-1.0.2" sources."has-yarn-2.1.0" sources."hash.js-1.1.7" @@ -5698,11 +5599,14 @@ in sources."htmlencode-0.0.4" sources."htmlparser2-4.1.0" sources."http-cache-semantics-4.1.0" - sources."http-errors-1.7.2" + (sources."http-errors-1.7.2" // { + dependencies = [ + sources."inherits-2.0.3" + ]; + }) sources."http-signature-1.2.0" sources."https-proxy-agent-5.0.0" - sources."iconv-2.3.5" - sources."iconv-lite-0.4.24" + sources."iconv-lite-0.6.3" sources."ignore-5.1.8" sources."ignore-by-default-1.0.1" sources."immediate-3.0.6" @@ -5710,17 +5614,16 @@ in sources."import-lazy-2.1.0" sources."imurmurhash-0.1.4" sources."inflight-1.0.6" - sources."inherits-2.0.3" + sources."inherits-2.0.4" sources."ini-1.3.7" sources."ipaddr.js-1.9.1" - sources."irc-git+https://matrix-org@github.com/matrix-org/node-irc.git#9028c2197c216dd8e6fc2cb3cc07ce2d6bf741a7" sources."irc-colors-1.5.0" sources."is-arrayish-0.3.2" sources."is-binary-path-2.1.0" sources."is-ci-2.0.0" sources."is-core-module-2.4.0" sources."is-extglob-2.1.1" - sources."is-fullwidth-code-point-2.0.0" + sources."is-fullwidth-code-point-3.0.0" sources."is-glob-4.0.1" sources."is-installed-globally-0.3.2" sources."is-my-ip-valid-1.0.0" @@ -5741,31 +5644,18 @@ in sources."isstream-0.1.2" sources."istanbul-lib-coverage-2.0.5" sources."istanbul-lib-hook-2.0.7" - (sources."istanbul-lib-instrument-3.3.0" // { - dependencies = [ - sources."semver-6.3.0" - ]; - }) - (sources."istanbul-lib-report-2.0.8" // { - dependencies = [ - sources."has-flag-3.0.0" - sources."make-dir-2.1.0" - sources."pify-4.0.1" - sources."supports-color-6.1.0" - ]; - }) + sources."istanbul-lib-instrument-3.3.0" + sources."istanbul-lib-report-2.0.8" (sources."istanbul-lib-source-maps-3.0.6" // { dependencies = [ - sources."make-dir-2.1.0" - sources."pify-4.0.1" sources."rimraf-2.7.1" ]; }) sources."istanbul-reports-2.2.7" - sources."jasmine-3.7.0" - sources."jasmine-core-3.7.1" + sources."jasmine-3.6.2" + sources."jasmine-core-3.6.0" sources."js-tokens-4.0.0" - sources."js-yaml-3.14.1" + sources."js-yaml-3.14.0" sources."jsbn-0.1.1" sources."jsesc-2.5.2" sources."json-buffer-3.0.0" @@ -5788,7 +5678,6 @@ in sources."lodash-4.17.21" sources."lodash.clonedeep-4.5.0" sources."lodash.flattendeep-4.4.0" - sources."lodash.merge-4.6.2" sources."lodash.truncate-4.4.2" sources."logform-2.2.0" sources."loglevel-1.7.1" @@ -5796,24 +5685,43 @@ in sources."lowercase-keys-1.0.1" sources."lru-cache-5.1.1" sources."lru_map-0.3.3" - (sources."make-dir-3.1.0" // { + (sources."make-dir-2.1.0" // { dependencies = [ - sources."semver-6.3.0" + sources."pify-4.0.1" + sources."semver-5.7.1" ]; }) sources."matrix-appservice-0.8.0" (sources."matrix-appservice-bridge-2.6.1" // { dependencies = [ sources."argparse-2.0.1" + sources."chalk-4.1.1" sources."extend-3.0.2" + sources."has-flag-4.0.0" sources."js-yaml-4.1.0" sources."nopt-5.0.0" + sources."supports-color-7.2.0" ]; }) (sources."matrix-bot-sdk-0.4.0" // { dependencies = [ sources."chalk-3.0.0" + sources."escape-string-regexp-1.0.5" + sources."has-flag-4.0.0" + (sources."postcss-7.0.35" // { + dependencies = [ + sources."ansi-styles-3.2.1" + (sources."chalk-2.4.2" // { + dependencies = [ + sources."supports-color-5.5.0" + ]; + }) + sources."has-flag-3.0.0" + sources."supports-color-6.1.0" + ]; + }) sources."sanitize-html-1.27.5" + sources."supports-color-7.2.0" ]; }) (sources."matrix-js-sdk-9.11.0" // { @@ -5822,20 +5730,20 @@ in ]; }) sources."matrix-lastactive-0.1.5" - (sources."matrix-org-irc-1.0.0-alpha4" // { - dependencies = [ - sources."iconv-lite-0.6.3" - ]; - }) + sources."matrix-org-irc-1.2.0" sources."media-typer-0.3.0" sources."merge-descriptors-1.0.1" sources."merge-source-map-1.1.0" sources."merge2-1.4.1" sources."methods-1.1.2" - sources."micromatch-4.0.4" + (sources."micromatch-4.0.4" // { + dependencies = [ + sources."picomatch-2.2.3" + ]; + }) sources."mime-1.6.0" - sources."mime-db-1.48.0" - sources."mime-types-2.1.31" + sources."mime-db-1.47.0" + sources."mime-types-2.1.30" sources."mimic-response-1.0.1" sources."minimalistic-assert-1.0.1" sources."minimatch-3.0.4" @@ -5851,7 +5759,6 @@ in ]; }) sources."ms-2.1.2" - sources."nan-2.14.2" sources."nanoid-3.1.23" sources."natural-compare-1.4.0" sources."nedb-1.8.0" @@ -5861,18 +5768,20 @@ in (sources."nodemon-2.0.7" // { dependencies = [ sources."debug-3.2.7" - sources."has-flag-3.0.0" + sources."semver-5.7.1" sources."supports-color-5.5.0" ]; }) sources."nopt-3.0.6" - sources."normalize-package-data-2.5.0" + (sources."normalize-package-data-2.5.0" // { + dependencies = [ + sources."semver-5.7.1" + ]; + }) sources."normalize-path-3.0.0" sources."normalize-url-4.5.1" (sources."nyc-14.1.1" // { dependencies = [ - sources."make-dir-2.1.0" - sources."pify-4.0.1" sources."rimraf-2.7.1" ]; }) @@ -5883,7 +5792,6 @@ in sources."on-headers-1.0.2" sources."once-1.4.0" sources."one-time-1.0.0" - sources."optimist-0.3.7" sources."optionator-0.9.1" sources."os-homedir-1.0.2" sources."p-cancelable-1.1.0" @@ -5894,11 +5802,7 @@ in sources."p-timeout-3.2.0" sources."p-try-2.2.0" sources."package-hash-3.0.0" - (sources."package-json-6.5.0" // { - dependencies = [ - sources."semver-6.3.0" - ]; - }) + sources."package-json-6.5.0" sources."packet-reader-1.0.0" sources."parent-module-1.0.1" sources."parse-json-4.0.0" @@ -5907,7 +5811,7 @@ in sources."path-exists-3.0.0" sources."path-is-absolute-1.0.1" sources."path-key-3.1.1" - sources."path-parse-1.0.7" + sources."path-parse-1.0.6" sources."path-to-regexp-0.1.7" sources."path-type-4.0.0" sources."performance-now-2.1.0" @@ -5918,24 +5822,10 @@ in sources."pg-protocol-1.5.0" sources."pg-types-2.2.0" sources."pgpass-1.0.4" - sources."picomatch-2.3.0" + sources."picomatch-2.2.2" sources."pify-3.0.0" sources."pkg-dir-3.0.0" - (sources."postcss-7.0.35" // { - dependencies = [ - sources."ansi-styles-3.2.1" - (sources."chalk-2.4.2" // { - dependencies = [ - sources."supports-color-5.5.0" - ]; - }) - sources."color-convert-1.9.3" - sources."color-name-1.1.3" - sources."escape-string-regexp-1.0.5" - sources."has-flag-3.0.0" - sources."supports-color-6.1.0" - ]; - }) + sources."postcss-8.3.0" sources."postgres-array-2.0.0" sources."postgres-bytea-1.0.0" sources."postgres-date-1.0.7" @@ -5945,7 +5835,7 @@ in sources."process-nextick-args-2.0.1" sources."progress-2.0.3" sources."prom-client-13.1.0" - sources."proxy-addr-2.0.7" + sources."proxy-addr-2.0.6" (sources."proxyquire-1.8.0" // { dependencies = [ sources."resolve-1.1.7" @@ -5961,8 +5851,16 @@ in sources."queue-microtask-1.2.3" sources."quick-lru-4.0.1" sources."range-parser-1.2.1" - sources."raw-body-2.4.0" - sources."rc-1.2.8" + (sources."raw-body-2.4.0" // { + dependencies = [ + sources."iconv-lite-0.4.24" + ]; + }) + (sources."rc-1.2.8" // { + dependencies = [ + sources."strip-json-comments-2.0.1" + ]; + }) (sources."read-pkg-3.0.0" // { dependencies = [ sources."path-type-3.0.0" @@ -5971,8 +5869,7 @@ in sources."read-pkg-up-4.0.0" sources."readable-stream-3.6.0" sources."readdirp-3.5.0" - sources."rebuild-0.1.2" - sources."regenerator-runtime-0.13.8" + sources."regenerator-runtime-0.13.7" sources."regexpp-3.1.0" sources."registry-auth-token-4.2.1" sources."registry-url-5.1.0" @@ -6002,15 +5899,10 @@ in sources."domhandler-4.2.0" sources."escape-string-regexp-4.0.0" sources."htmlparser2-6.1.0" - sources."postcss-8.3.0" - ]; - }) - sources."semver-5.7.1" - (sources."semver-diff-3.1.1" // { - dependencies = [ - sources."semver-6.3.0" ]; }) + sources."semver-6.3.0" + sources."semver-diff-3.1.1" (sources."send-0.17.1" // { dependencies = [ (sources."debug-2.6.9" // { @@ -6027,14 +5919,10 @@ in sources."shebang-command-2.0.0" sources."shebang-regex-3.0.0" sources."side-channel-1.0.4" - sources."signal-exit-3.0.3" + sources."signal-exit-3.0.2" sources."simple-swizzle-0.2.2" sources."slash-3.0.0" - (sources."slice-ansi-4.0.0" // { - dependencies = [ - sources."is-fullwidth-code-point-3.0.0" - ]; - }) + sources."slice-ansi-4.0.0" sources."source-map-0.6.1" sources."source-map-js-0.6.2" (sources."spawn-wrap-1.4.3" // { @@ -6046,7 +5934,7 @@ in sources."spdx-correct-3.1.1" sources."spdx-exceptions-2.3.0" sources."spdx-expression-parse-3.0.1" - sources."spdx-license-ids-3.0.9" + sources."spdx-license-ids-3.0.8" sources."split2-3.2.2" sources."sprintf-js-1.0.3" sources."sshpk-1.16.1" @@ -6054,12 +5942,10 @@ in sources."statuses-1.5.0" sources."stealthy-require-1.1.1" sources."steno-0.4.4" - (sources."string-width-4.2.2" // { + (sources."string-width-3.1.0" // { dependencies = [ - sources."ansi-regex-5.0.0" - sources."emoji-regex-8.0.0" - sources."is-fullwidth-code-point-3.0.0" - sources."strip-ansi-6.0.0" + sources."emoji-regex-7.0.3" + sources."is-fullwidth-code-point-2.0.0" ]; }) (sources."string_decoder-1.3.0" // { @@ -6069,13 +5955,14 @@ in }) sources."strip-ansi-5.2.0" sources."strip-bom-3.0.0" - sources."strip-json-comments-2.0.1" - sources."supports-color-7.2.0" + sources."strip-json-comments-3.1.1" + sources."supports-color-6.1.0" (sources."table-6.7.1" // { dependencies = [ - sources."ajv-8.6.0" + sources."ajv-8.4.0" sources."ansi-regex-5.0.0" sources."json-schema-traverse-1.0.0" + sources."string-width-4.2.2" sources."strip-ansi-6.0.0" ]; }) @@ -6095,7 +5982,7 @@ in }) sources."tough-cookie-2.5.0" sources."triple-beam-1.3.0" - sources."tslib-1.14.1" + sources."tslib-1.11.1" sources."tsutils-3.21.0" sources."tunnel-agent-0.6.0" sources."tweetnacl-0.14.5" @@ -6103,7 +5990,7 @@ in sources."type-fest-0.8.1" sources."type-is-1.6.18" sources."typedarray-to-buffer-3.1.5" - sources."typescript-4.3.2" + sources."typescript-4.2.3" (sources."undefsafe-2.0.3" // { dependencies = [ sources."debug-2.6.9" @@ -6117,9 +6004,11 @@ in (sources."update-notifier-4.1.3" // { dependencies = [ sources."chalk-3.0.0" + sources."has-flag-4.0.0" + sources."supports-color-7.2.0" ]; }) - sources."uri-js-4.4.1" + sources."uri-js-4.2.2" sources."url-parse-lax-3.0.0" sources."utf-8-validate-5.0.5" sources."util-deprecate-1.0.2" @@ -6131,7 +6020,13 @@ in sources."verror-1.10.0" sources."which-2.0.2" sources."which-module-2.0.0" - sources."widest-line-3.1.0" + (sources."widest-line-3.1.0" // { + dependencies = [ + sources."ansi-regex-5.0.0" + sources."string-width-4.2.2" + sources."strip-ansi-6.0.0" + ]; + }) (sources."winston-3.3.3" // { dependencies = [ sources."async-3.2.0" @@ -6145,26 +6040,18 @@ in ]; }) sources."word-wrap-1.2.3" - sources."wordwrap-0.0.3" (sources."wrap-ansi-5.1.0" // { dependencies = [ sources."ansi-styles-3.2.1" - sources."color-convert-1.9.3" - sources."color-name-1.1.3" - sources."string-width-3.1.0" ]; }) sources."wrappy-1.0.2" - sources."write-file-atomic-3.0.3" + sources."write-file-atomic-2.4.3" sources."xdg-basedir-4.0.0" sources."xtend-4.0.2" sources."y18n-4.0.3" sources."yallist-3.1.1" - (sources."yargs-13.3.2" // { - dependencies = [ - sources."string-width-3.1.0" - ]; - }) + sources."yargs-13.3.2" sources."yargs-parser-13.1.2" ]; buildInputs = globalBuildInputs; @@ -6174,6 +6061,25 @@ in }; production = false; bypassCache = true; - reconstructLock = true; + reconstructLock = false; }; +in +{ + args = args; + sources = sources; + tarball = nodeEnv.buildNodeSourceDist args; + package = nodeEnv.buildNodePackage args; + shell = nodeEnv.buildNodeShell args; + nodeDependencies = nodeEnv.buildNodeDependencies (lib.overrideExisting args { + src = stdenv.mkDerivation { + name = args.name + "-package-json"; + src = nix-gitignore.gitignoreSourcePure [ + "*" + "!package.json" + "!package-lock.json" + ] args.src; + dontBuild = true; + installPhase = "mkdir -p $out; cp -r ./* $out;"; + }; + }); } diff --git a/pkgs/servers/matrix-synapse/matrix-appservice-irc/package.json b/pkgs/servers/matrix-synapse/matrix-appservice-irc/package.json index ae1326275a26..998515f568e6 100644 --- a/pkgs/servers/matrix-synapse/matrix-appservice-irc/package.json +++ b/pkgs/servers/matrix-synapse/matrix-appservice-irc/package.json @@ -1,3 +1,69 @@ -[ - {"matrix-appservice-irc": "git+https://github.com/matrix-org/matrix-appservice-irc.git#0.26.1" } -] +{ + "name": "matrix-appservice-irc", + "version": "0.30.0", + "description": "An IRC Bridge for Matrix", + "main": "app.js", + "bin": "./bin/matrix-appservice-irc", + "engines": { + "node": ">=12" + }, + "scripts": { + "prepare": "npm run build", + "build": "tsc --project ./tsconfig.json", + "test": "BLUEBIRD_DEBUG=1 jasmine --stop-on-failure=true", + "lint": "eslint -c .eslintrc --max-warnings 0 'spec/**/*.js' 'src/**/*.ts'", + "check": "npm test && npm run lint", + "ci-test": "nyc --report text jasmine", + "ci": "npm run lint && npm run ci-test" + }, + "repository": { + "type": "git", + "url": "https://github.com/matrix-org/matrix-appservice-irc.git" + }, + "author": "", + "license": "Apache-2.0", + "bugs": { + "url": "https://github.com/matrix-org/matrix-appservice-irc/issues" + }, + "dependencies": { + "@sentry/node": "^5.27.1", + "bluebird": "^3.7.2", + "escape-string-regexp": "^4.0.0", + "extend": "^3.0.2", + "he": "^1.2.0", + "logform": "^2.2.0", + "matrix-appservice": "^0.8.0", + "matrix-appservice-bridge": "^2.6.1", + "matrix-lastactive": "^0.1.5", + "matrix-org-irc": "^1.2.0", + "nedb": "^1.1.2", + "nodemon": "^2.0.7", + "nopt": "^3.0.1", + "p-queue": "^6.6.2", + "pg": "^8.6.0", + "quick-lru": "^4.0.1", + "request": "^2.54.0", + "request-promise-native": "^1.0.9", + "sanitize-html": "^2.4.0", + "winston": "^3.3.3", + "winston-daily-rotate-file": "^4.5.5" + }, + "devDependencies": { + "@types/bluebird": "^3.5.32", + "@types/express": "^4.17.7", + "@types/extend": "^3.0.1", + "@types/he": "^1.1.1", + "@types/nedb": "^1.8.11", + "@types/nopt": "^3.0.29", + "@types/pg": "^8.6.0", + "@types/sanitize-html": "^2.3.1", + "@typescript-eslint/eslint-plugin": "^4.16.1", + "@typescript-eslint/parser": "^4.16.1", + "eslint": "^7.21.0", + "jasmine": "^3.6.2", + "nyc": "^14.1.1", + "prom-client": "^13.0.0", + "proxyquire": "^1.4.0", + "typescript": "^4.2.2" + } +} diff --git a/pkgs/servers/matrix-synapse/matrix-appservice-irc/update.sh b/pkgs/servers/matrix-synapse/matrix-appservice-irc/update.sh index f6cf0c029765..462512dd0f4d 100755 --- a/pkgs/servers/matrix-synapse/matrix-appservice-irc/update.sh +++ b/pkgs/servers/matrix-synapse/matrix-appservice-irc/update.sh @@ -1,5 +1,5 @@ #!/usr/bin/env nix-shell -#! nix-shell -i bash -p nodePackages.node2nix nodejs-12_x curl jq +#! nix-shell -i bash -p nodePackages.node2nix nodejs-12_x curl jq nix set -euo pipefail # cd to the folder containing this script @@ -15,10 +15,15 @@ fi echo "matrix-appservice-irc: $CURRENT_VERSION -> $TARGET_VERSION" -sed -i "s/#$CURRENT_VERSION/#$TARGET_VERSION/" package.json +rm -f package.json package-lock.json +wget https://github.com/matrix-org/matrix-appservice-irc/raw/$TARGET_VERSION/package.json +wget -O package-lock-temp.json https://github.com/matrix-org/matrix-appservice-irc/raw/$TARGET_VERSION/package-lock.json +echo "$TARGET_VERSION" > ./REVISION ./generate-dependencies.sh +rm ./package-lock-temp.json + # Apparently this is done by r-ryantm, so only uncomment for manual usage #git add ./package.json ./node-packages.nix #git commit -m "matrix-appservice-irc: ${CURRENT_VERSION} -> ${TARGET_VERSION}" diff --git a/pkgs/servers/mautrix-whatsapp/default.nix b/pkgs/servers/mautrix-whatsapp/default.nix index 70684b767c58..134ff5219925 100644 --- a/pkgs/servers/mautrix-whatsapp/default.nix +++ b/pkgs/servers/mautrix-whatsapp/default.nix @@ -2,18 +2,18 @@ buildGoModule rec { pname = "mautrix-whatsapp"; - version = "0.1.9"; + version = "0.1.10"; src = fetchFromGitHub { owner = "mautrix"; repo = "whatsapp"; rev = "v${version}"; - sha256 = "DKW54bxhohvtz71zqFi4ZacK1pVys6aR5B9naD7PYPk="; + sha256 = "sha256-4eqgmJ5CC1Glc8jG+4cQs6FbrY8Az29rCrZvFU3PAoM="; }; buildInputs = [ olm ]; - vendorSha256 = "Y9mUl7fWZiXBEEDX3w2HXMlQKJntv16WeQC1bQQ7hHs="; + vendorSha256 = "sha256-Y9mUl7fWZiXBEEDX3w2HXMlQKJntv16WeQC1bQQ7hHs="; doCheck = false; diff --git a/pkgs/servers/minio/default.nix b/pkgs/servers/minio/default.nix index 7fba57a94be6..693d5fc280fc 100644 --- a/pkgs/servers/minio/default.nix +++ b/pkgs/servers/minio/default.nix @@ -15,16 +15,16 @@ let in buildGoModule rec { pname = "minio"; - version = "2021-09-15T04-54-25Z"; + version = "2021-10-27T16-29-42Z"; src = fetchFromGitHub { owner = "minio"; repo = "minio"; rev = "RELEASE.${version}"; - sha256 = "sha256-h1RuYRduCZFCklwa/gvkTZXTi71UDb8ofMPb+X9KIuA="; + sha256 = "sha256-U/1NuWyNX0OUrtysV3ShvbyxiSiYzMFNK3lmAVs6D3Y="; }; - vendorSha256 = "sha256-ccqa5ltblk1Z/RRJkC1h+EpkxylWdKXfNRYOeOzrPb4="; + vendorSha256 = "sha256-GLooogUglKxEk7X9UI4VZvj+mJ9LXLZEjFsxCpzm61I="; doCheck = false; diff --git a/pkgs/servers/mjolnir/default.nix b/pkgs/servers/mjolnir/default.nix new file mode 100644 index 000000000000..f6444ef386ac --- /dev/null +++ b/pkgs/servers/mjolnir/default.nix @@ -0,0 +1,86 @@ +{ lib +, nixosTests +, stdenv +, fetchFromGitHub +, makeWrapper +, nodejs +, pkgs +}: + +stdenv.mkDerivation rec { + pname = "mjolnir"; + version = "1.1.20"; + + src = fetchFromGitHub { + owner = "matrix-org"; + repo = "mjolnir"; + rev = "v${version}"; + sha256 = "yfMBnNriSpwitR4u664iz+8uWp/3iSTymyFajMBP5xg="; + }; + + nativeBuildInputs = [ + nodejs + makeWrapper + ]; + + buildPhase = + let + nodeDependencies = ((import ./node-composition.nix { + inherit pkgs nodejs; + inherit (stdenv.hostPlatform) system; + }).nodeDependencies.override (old: { + # access to path '/nix/store/...-source' is forbidden in restricted mode + src = src; + dontNpmInstall = true; + })); + in + '' + runHook preBuild + + ln -s ${nodeDependencies}/lib/node_modules . + export PATH="${nodeDependencies}/bin:$PATH" + npm run build + + runHook postBuild + ''; + + installPhase = '' + runHook preInstall + + mkdir -p $out/share + cp -a . $out/share/mjolnir + + makeWrapper ${nodejs}/bin/node $out/bin/mjolnir \ + --add-flags $out/share/mjolnir/lib/index.js + + runHook postInstall + ''; + + passthru = { + tests = { + inherit (nixosTests) mjolnir; + }; + updateScript = ./update.sh; + }; + + meta = with lib; { + description = "A moderation tool for Matrix"; + homepage = "https://github.com/matrix-org/mjolnir"; + longDescription = '' + As an all-in-one moderation tool, it can protect your server from + malicious invites, spam messages, and whatever else you don't want. + In addition to server-level protection, Mjolnir is great for communities + wanting to protect their rooms without having to use their personal + accounts for moderation. + + The bot by default includes support for bans, redactions, anti-spam, + server ACLs, room directory changes, room alias transfers, account + deactivation, room shutdown, and more. + + A Synapse module is also available to apply the same rulesets the bot + uses across an entire homeserver. + ''; + license = licenses.asl20; + maintainers = with maintainers; [ jojosch ]; + }; +} diff --git a/pkgs/servers/mjolnir/node-composition.nix b/pkgs/servers/mjolnir/node-composition.nix new file mode 100644 index 000000000000..ef810f1b06e7 --- /dev/null +++ b/pkgs/servers/mjolnir/node-composition.nix @@ -0,0 +1,17 @@ +# This file has been generated by node2nix 1.9.0. Do not edit! + +{pkgs ? import <nixpkgs> { + inherit system; + }, system ? builtins.currentSystem, nodejs ? pkgs."nodejs-12_x"}: + +let + nodeEnv = import ./node-env.nix { + inherit (pkgs) stdenv lib python2 runCommand writeTextFile; + inherit pkgs nodejs; + libtool = if pkgs.stdenv.isDarwin then pkgs.darwin.cctools else null; + }; +in +import ./node-deps.nix { + inherit (pkgs) fetchurl nix-gitignore stdenv lib fetchgit; + inherit nodeEnv; +} diff --git a/pkgs/servers/mjolnir/node-deps.nix b/pkgs/servers/mjolnir/node-deps.nix new file mode 100644 index 000000000000..30c8a33277e4 --- /dev/null +++ b/pkgs/servers/mjolnir/node-deps.nix @@ -0,0 +1,3037 @@ +# This file has been generated by node2nix 1.9.0. Do not edit! + +{nodeEnv, fetchurl, fetchgit, nix-gitignore, stdenv, lib, globalBuildInputs ? []}: + +let + sources = { + "@babel/code-frame-7.14.5" = { + name = "_at_babel_slash_code-frame"; + packageName = "@babel/code-frame"; + version = "7.14.5"; + src = fetchurl { + url = "https://registry.npmjs.org/@babel/code-frame/-/code-frame-7.14.5.tgz"; + sha512 = "9pzDqyc6OLDaqe+zbACgFkb6fKMNG6CObKpnYXChRsvYGyEdc7CA2BaqeOM+vOtCS5ndmJicPJhKAwYRI6UfFw=="; + }; + }; + "@babel/helper-validator-identifier-7.15.7" = { + name = "_at_babel_slash_helper-validator-identifier"; + packageName = "@babel/helper-validator-identifier"; + version = "7.15.7"; + src = fetchurl { + url = "https://registry.npmjs.org/@babel/helper-validator-identifier/-/helper-validator-identifier-7.15.7.tgz"; + sha512 = "K4JvCtQqad9OY2+yTU8w+E82ywk/fe+ELNlt1G8z3bVGlZfn/hOcQQsUhGhW/N+tb3fxK800wLtKOE/aM0m72w=="; + }; + }; + "@babel/highlight-7.14.5" = { + name = "_at_babel_slash_highlight"; + packageName = "@babel/highlight"; + version = "7.14.5"; + src = fetchurl { + url = "https://registry.npmjs.org/@babel/highlight/-/highlight-7.14.5.tgz"; + sha512 = "qf9u2WFWVV0MppaL877j2dBtQIDgmidgjGk5VIMw3OadXvYaXn66U1BFlH2t4+t3i+8PhedppRv+i40ABzd+gg=="; + }; + }; + "@jest/types-27.1.1" = { + name = "_at_jest_slash_types"; + packageName = "@jest/types"; + version = "27.1.1"; + src = fetchurl { + url = "https://registry.npmjs.org/@jest/types/-/types-27.1.1.tgz"; + sha512 = "yqJPDDseb0mXgKqmNqypCsb85C22K1aY5+LUxh7syIM9n/b0AsaltxNy+o6tt29VcfGDpYEve175bm3uOhcehA=="; + }; + }; + "@types/body-parser-1.19.1" = { + name = "_at_types_slash_body-parser"; + packageName = "@types/body-parser"; + version = "1.19.1"; + src = fetchurl { + url = "https://registry.npmjs.org/@types/body-parser/-/body-parser-1.19.1.tgz"; + sha512 = "a6bTJ21vFOGIkwM0kzh9Yr89ziVxq4vYH2fQ6N8AeipEzai/cFK6aGMArIkUeIdRIgpwQa+2bXiLuUJCpSf2Cg=="; + }; + }; + "@types/connect-3.4.35" = { + name = "_at_types_slash_connect"; + packageName = "@types/connect"; + version = "3.4.35"; + src = fetchurl { + url = "https://registry.npmjs.org/@types/connect/-/connect-3.4.35.tgz"; + sha512 = "cdeYyv4KWoEgpBISTxWvqYsVy444DOqehiF3fM3ne10AmJ62RSyNkUnxMJXHQWRQQX2eR94m5y1IZyDwBjV9FQ=="; 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+ }) + sources."strip-bom-3.0.0" + sources."strip-json-comments-3.1.1" + sources."supports-color-7.2.0" + sources."to-regex-range-5.0.1" + sources."toidentifier-1.0.0" + sources."tough-cookie-2.5.0" + sources."ts-mocha-8.0.0" + (sources."ts-node-7.0.1" // { + dependencies = [ + sources."diff-3.5.0" + sources."mkdirp-0.5.5" + ]; + }) + (sources."tsconfig-paths-3.11.0" // { + dependencies = [ + sources."json5-1.0.1" + ]; + }) + sources."tslib-1.14.1" + (sources."tslint-6.1.3" // { + dependencies = [ + sources."ansi-styles-3.2.1" + sources."argparse-1.0.10" + sources."chalk-2.4.2" + sources."color-convert-1.9.3" + sources."color-name-1.1.3" + sources."diff-4.0.2" + sources."escape-string-regexp-1.0.5" + sources."has-flag-3.0.0" + sources."js-yaml-3.14.1" + sources."mkdirp-0.5.5" + sources."supports-color-5.5.0" + ]; + }) + sources."tsutils-2.29.0" + sources."tunnel-agent-0.6.0" + sources."tweetnacl-0.14.5" + sources."type-is-1.6.18" + sources."typescript-4.4.3" + sources."unpipe-1.0.0" + sources."uri-js-4.4.1" + sources."utils-merge-1.0.1" + sources."uuid-3.4.0" + sources."vary-1.1.2" + sources."verror-1.10.0" + sources."which-2.0.2" + sources."wide-align-1.1.3" + sources."workerpool-6.1.5" + (sources."wrap-ansi-7.0.0" // { + dependencies = [ + sources."is-fullwidth-code-point-3.0.0" + sources."string-width-4.2.2" + sources."strip-ansi-6.0.0" + ]; + }) + sources."wrappy-1.0.2" + sources."y18n-5.0.8" + sources."yallist-4.0.0" + (sources."yargs-16.2.0" // { + dependencies = [ + sources."is-fullwidth-code-point-3.0.0" + sources."string-width-4.2.2" + sources."strip-ansi-6.0.0" + ]; + }) + sources."yargs-parser-20.2.4" + sources."yargs-unparser-2.0.0" + sources."yn-2.0.0" + sources."yocto-queue-0.1.0" + ]; + buildInputs = globalBuildInputs; + meta = { + description = "A moderation tool for Matrix"; + license = "Apache-2.0"; + }; + production = false; + bypassCache = true; + reconstructLock = true; + }; +in +{ + args = args; + sources = sources; + tarball = nodeEnv.buildNodeSourceDist args; + package = nodeEnv.buildNodePackage args; + shell = nodeEnv.buildNodeShell args; + nodeDependencies = nodeEnv.buildNodeDependencies (lib.overrideExisting args { + src = stdenv.mkDerivation { + name = args.name + "-package-json"; + src = nix-gitignore.gitignoreSourcePure [ + "*" + "!package.json" + "!package-lock.json" + ] args.src; + dontBuild = true; + installPhase = "mkdir -p $out; cp -r ./* $out;"; + }; + }); +} diff --git a/pkgs/servers/mjolnir/node-env.nix b/pkgs/servers/mjolnir/node-env.nix new file mode 100644 index 000000000000..21089c4d5459 --- /dev/null +++ b/pkgs/servers/mjolnir/node-env.nix @@ -0,0 +1,573 @@ +# This file originates from node2nix + +{lib, stdenv, nodejs, python2, pkgs, libtool, runCommand, writeTextFile}: + +let + # Workaround to cope with utillinux in Nixpkgs 20.09 and util-linux in Nixpkgs master + utillinux = if pkgs ? utillinux then pkgs.utillinux else pkgs.util-linux; + + python = if nodejs ? python then nodejs.python else python2; + + # Create a tar wrapper that filters all the 'Ignoring unknown extended header keyword' noise + tarWrapper = runCommand "tarWrapper" {} '' + mkdir -p $out/bin + + cat > $out/bin/tar <<EOF + #! ${stdenv.shell} -e + $(type -p tar) "\$@" --warning=no-unknown-keyword --delay-directory-restore + EOF + + chmod +x $out/bin/tar + ''; + + # Function that generates a TGZ file from a NPM project + buildNodeSourceDist = + { name, version, src, ... }: + + stdenv.mkDerivation { + name = "node-tarball-${name}-${version}"; + inherit src; + buildInputs = [ nodejs ]; + buildPhase = '' + export HOME=$TMPDIR + tgzFile=$(npm pack | tail -n 1) # Hooks to the pack command will add output (https://docs.npmjs.com/misc/scripts) + ''; + installPhase = '' + mkdir -p $out/tarballs + mv $tgzFile $out/tarballs + mkdir -p $out/nix-support + echo "file source-dist $out/tarballs/$tgzFile" >> $out/nix-support/hydra-build-products + ''; + }; + + includeDependencies = {dependencies}: + lib.optionalString (dependencies != []) + (lib.concatMapStrings (dependency: + '' + # Bundle the dependencies of the package + mkdir -p node_modules + cd node_modules + + # Only include dependencies if they don't exist. They may also be bundled in the package. + if [ ! -e "${dependency.name}" ] + then + ${composePackage dependency} + fi + + cd .. + '' + ) dependencies); + + # Recursively composes the dependencies of a package + composePackage = { name, packageName, src, dependencies ? [], ... }@args: + builtins.addErrorContext "while evaluating node package '${packageName}'" '' + DIR=$(pwd) + cd $TMPDIR + + unpackFile ${src} + + # Make the base dir in which the target dependency resides first + mkdir -p "$(dirname "$DIR/${packageName}")" + + if [ -f "${src}" ] + then + # Figure out what directory has been unpacked + packageDir="$(find . -maxdepth 1 -type d | tail -1)" + + # Restore write permissions to make building work + find "$packageDir" -type d -exec chmod u+x {} \; + chmod -R u+w "$packageDir" + + # Move the extracted tarball into the output folder + mv "$packageDir" "$DIR/${packageName}" + elif [ -d "${src}" ] + then + # Get a stripped name (without hash) of the source directory. + # On old nixpkgs it's already set internally. + if [ -z "$strippedName" ] + then + strippedName="$(stripHash ${src})" + fi + + # Restore write permissions to make building work + chmod -R u+w "$strippedName" + + # Move the extracted directory into the output folder + mv "$strippedName" "$DIR/${packageName}" + fi + + # Unset the stripped name to not confuse the next unpack step + unset strippedName + + # Include the dependencies of the package + cd "$DIR/${packageName}" + ${includeDependencies { inherit dependencies; }} + cd .. + ${lib.optionalString (builtins.substring 0 1 packageName == "@") "cd .."} + ''; + + pinpointDependencies = {dependencies, production}: + let + pinpointDependenciesFromPackageJSON = writeTextFile { + name = "pinpointDependencies.js"; + text = '' + var fs = require('fs'); + var path = require('path'); + + function resolveDependencyVersion(location, name) { + if(location == process.env['NIX_STORE']) { + return null; + } else { + var dependencyPackageJSON = path.join(location, "node_modules", name, "package.json"); + + if(fs.existsSync(dependencyPackageJSON)) { + var dependencyPackageObj = JSON.parse(fs.readFileSync(dependencyPackageJSON)); + + if(dependencyPackageObj.name == name) { + return dependencyPackageObj.version; + } + } else { + return resolveDependencyVersion(path.resolve(location, ".."), name); + } + } + } + + function replaceDependencies(dependencies) { + if(typeof dependencies == "object" && dependencies !== null) { + for(var dependency in dependencies) { + var resolvedVersion = resolveDependencyVersion(process.cwd(), dependency); + + if(resolvedVersion === null) { + process.stderr.write("WARNING: cannot pinpoint dependency: "+dependency+", context: "+process.cwd()+"\n"); + } else { + dependencies[dependency] = resolvedVersion; + } + } + } + } + + /* Read the package.json configuration */ + var packageObj = JSON.parse(fs.readFileSync('./package.json')); + + /* Pinpoint all dependencies */ + replaceDependencies(packageObj.dependencies); + if(process.argv[2] == "development") { + replaceDependencies(packageObj.devDependencies); + } + replaceDependencies(packageObj.optionalDependencies); + + /* Write the fixed package.json file */ + fs.writeFileSync("package.json", JSON.stringify(packageObj, null, 2)); + ''; + }; + in + '' + node ${pinpointDependenciesFromPackageJSON} ${if production then "production" else "development"} + + ${lib.optionalString (dependencies != []) + '' + if [ -d node_modules ] + then + cd node_modules + ${lib.concatMapStrings (dependency: pinpointDependenciesOfPackage dependency) dependencies} + cd .. + fi + ''} + ''; + + # Recursively traverses all dependencies of a package and pinpoints all + # dependencies in the package.json file to the versions that are actually + # being used. + + pinpointDependenciesOfPackage = { packageName, dependencies ? [], production ? true, ... }@args: + '' + if [ -d "${packageName}" ] + then + cd "${packageName}" + ${pinpointDependencies { inherit dependencies production; }} + cd .. + ${lib.optionalString (builtins.substring 0 1 packageName == "@") "cd .."} + fi + ''; + + # Extract the Node.js source code which is used to compile packages with + # native bindings + nodeSources = runCommand "node-sources" {} '' + tar --no-same-owner --no-same-permissions -xf ${nodejs.src} + mv node-* $out + ''; + + # Script that adds _integrity fields to all package.json files to prevent NPM from consulting the cache (that is empty) + addIntegrityFieldsScript = writeTextFile { + name = "addintegrityfields.js"; + text = '' + var fs = require('fs'); + var path = require('path'); + + function augmentDependencies(baseDir, dependencies) { + for(var dependencyName in dependencies) { + var dependency = dependencies[dependencyName]; + + // Open package.json and augment metadata fields + var packageJSONDir = path.join(baseDir, "node_modules", dependencyName); + var packageJSONPath = path.join(packageJSONDir, "package.json"); + + if(fs.existsSync(packageJSONPath)) { // Only augment packages that exist. Sometimes we may have production installs in which development dependencies can be ignored + console.log("Adding metadata fields to: "+packageJSONPath); + var packageObj = JSON.parse(fs.readFileSync(packageJSONPath)); + + if(dependency.integrity) { + packageObj["_integrity"] = dependency.integrity; + } else { + packageObj["_integrity"] = "sha1-000000000000000000000000000="; // When no _integrity string has been provided (e.g. by Git dependencies), add a dummy one. It does not seem to harm and it bypasses downloads. + } + + if(dependency.resolved) { + packageObj["_resolved"] = dependency.resolved; // Adopt the resolved property if one has been provided + } else { + packageObj["_resolved"] = dependency.version; // Set the resolved version to the version identifier. This prevents NPM from cloning Git repositories. + } + + if(dependency.from !== undefined) { // Adopt from property if one has been provided + packageObj["_from"] = dependency.from; + } + + fs.writeFileSync(packageJSONPath, JSON.stringify(packageObj, null, 2)); + } + + // Augment transitive dependencies + if(dependency.dependencies !== undefined) { + augmentDependencies(packageJSONDir, dependency.dependencies); + } + } + } + + if(fs.existsSync("./package-lock.json")) { + var packageLock = JSON.parse(fs.readFileSync("./package-lock.json")); + + if(![1, 2].includes(packageLock.lockfileVersion)) { + process.stderr.write("Sorry, I only understand lock file versions 1 and 2!\n"); + process.exit(1); + } + + if(packageLock.dependencies !== undefined) { + augmentDependencies(".", packageLock.dependencies); + } + } + ''; + }; + + # Reconstructs a package-lock file from the node_modules/ folder structure and package.json files with dummy sha1 hashes + reconstructPackageLock = writeTextFile { + name = "addintegrityfields.js"; + text = '' + var fs = require('fs'); + var path = require('path'); + + var packageObj = JSON.parse(fs.readFileSync("package.json")); + + var lockObj = { + name: packageObj.name, + version: packageObj.version, + lockfileVersion: 1, + requires: true, + dependencies: {} + }; + + function augmentPackageJSON(filePath, dependencies) { + var packageJSON = path.join(filePath, "package.json"); + if(fs.existsSync(packageJSON)) { + var packageObj = JSON.parse(fs.readFileSync(packageJSON)); + dependencies[packageObj.name] = { + version: packageObj.version, + integrity: "sha1-000000000000000000000000000=", + dependencies: {} + }; + processDependencies(path.join(filePath, "node_modules"), dependencies[packageObj.name].dependencies); + } + } + + function processDependencies(dir, dependencies) { + if(fs.existsSync(dir)) { + var files = fs.readdirSync(dir); + + files.forEach(function(entry) { + var filePath = path.join(dir, entry); + var stats = fs.statSync(filePath); + + if(stats.isDirectory()) { + if(entry.substr(0, 1) == "@") { + // When we encounter a namespace folder, augment all packages belonging to the scope + var pkgFiles = fs.readdirSync(filePath); + + pkgFiles.forEach(function(entry) { + if(stats.isDirectory()) { + var pkgFilePath = path.join(filePath, entry); + augmentPackageJSON(pkgFilePath, dependencies); + } + }); + } else { + augmentPackageJSON(filePath, dependencies); + } + } + }); + } + } + + processDependencies("node_modules", lockObj.dependencies); + + fs.writeFileSync("package-lock.json", JSON.stringify(lockObj, null, 2)); + ''; + }; + + prepareAndInvokeNPM = {packageName, bypassCache, reconstructLock, npmFlags, production}: + let + forceOfflineFlag = if bypassCache then "--offline" else "--registry http://www.example.com"; + in + '' + # Pinpoint the versions of all dependencies to the ones that are actually being used + echo "pinpointing versions of dependencies..." + source $pinpointDependenciesScriptPath + + # Patch the shebangs of the bundled modules to prevent them from + # calling executables outside the Nix store as much as possible + patchShebangs . + + # Deploy the Node.js package by running npm install. Since the + # dependencies have been provided already by ourselves, it should not + # attempt to install them again, which is good, because we want to make + # it Nix's responsibility. If it needs to install any dependencies + # anyway (e.g. because the dependency parameters are + # incomplete/incorrect), it fails. + # + # The other responsibilities of NPM are kept -- version checks, build + # steps, postprocessing etc. + + export HOME=$TMPDIR + cd "${packageName}" + runHook preRebuild + + ${lib.optionalString bypassCache '' + ${lib.optionalString reconstructLock '' + if [ -f package-lock.json ] + then + echo "WARNING: Reconstruct lock option enabled, but a lock file already exists!" + echo "This will most likely result in version mismatches! We will remove the lock file and regenerate it!" + rm package-lock.json + else + echo "No package-lock.json file found, reconstructing..." + fi + + node ${reconstructPackageLock} + ''} + + node ${addIntegrityFieldsScript} + ''} + + npm ${forceOfflineFlag} --nodedir=${nodeSources} ${npmFlags} ${lib.optionalString production "--production"} rebuild + + if [ "''${dontNpmInstall-}" != "1" ] + then + # NPM tries to download packages even when they already exist if npm-shrinkwrap is used. + rm -f npm-shrinkwrap.json + + npm ${forceOfflineFlag} --nodedir=${nodeSources} ${npmFlags} ${lib.optionalString production "--production"} install + fi + ''; + + # Builds and composes an NPM package including all its dependencies + buildNodePackage = + { name + , packageName + , version + , dependencies ? [] + , buildInputs ? [] + , production ? true + , npmFlags ? "" + , dontNpmInstall ? false + , bypassCache ? false + , reconstructLock ? false + , preRebuild ? "" + , dontStrip ? true + , unpackPhase ? "true" + , buildPhase ? "true" + , meta ? {} + , ... }@args: + + let + extraArgs = removeAttrs args [ "name" "dependencies" "buildInputs" "dontStrip" "dontNpmInstall" "preRebuild" "unpackPhase" "buildPhase" "meta" ]; + in + stdenv.mkDerivation ({ + name = "${name}-${version}"; + buildInputs = [ tarWrapper python nodejs ] + ++ lib.optional (stdenv.isLinux) utillinux + ++ lib.optional (stdenv.isDarwin) libtool + ++ buildInputs; + + inherit nodejs; + + inherit dontStrip; # Stripping may fail a build for some package deployments + inherit dontNpmInstall preRebuild unpackPhase buildPhase; + + compositionScript = composePackage args; + pinpointDependenciesScript = pinpointDependenciesOfPackage args; + + passAsFile = [ "compositionScript" "pinpointDependenciesScript" ]; + + installPhase = '' + # Create and enter a root node_modules/ folder + mkdir -p $out/lib/node_modules + cd $out/lib/node_modules + + # Compose the package and all its dependencies + source $compositionScriptPath + + ${prepareAndInvokeNPM { inherit packageName bypassCache reconstructLock npmFlags production; }} + + # Create symlink to the deployed executable folder, if applicable + if [ -d "$out/lib/node_modules/.bin" ] + then + ln -s $out/lib/node_modules/.bin $out/bin + fi + + # Create symlinks to the deployed manual page folders, if applicable + if [ -d "$out/lib/node_modules/${packageName}/man" ] + then + mkdir -p $out/share + for dir in "$out/lib/node_modules/${packageName}/man/"* + do + mkdir -p $out/share/man/$(basename "$dir") + for page in "$dir"/* + do + ln -s $page $out/share/man/$(basename "$dir") + done + done + fi + + # Run post install hook, if provided + runHook postInstall + ''; + + meta = { + # default to Node.js' platforms + platforms = nodejs.meta.platforms; + } // meta; + } // extraArgs); + + # Builds a node environment (a node_modules folder and a set of binaries) + buildNodeDependencies = + { name + , packageName + , version + , src + , dependencies ? [] + , buildInputs ? [] + , production ? true + , npmFlags ? "" + , dontNpmInstall ? false + , bypassCache ? false + , reconstructLock ? false + , dontStrip ? true + , unpackPhase ? "true" + , buildPhase ? "true" + , ... }@args: + + let + extraArgs = removeAttrs args [ "name" "dependencies" "buildInputs" ]; + in + stdenv.mkDerivation ({ + name = "node-dependencies-${name}-${version}"; + + buildInputs = [ tarWrapper python nodejs ] + ++ lib.optional (stdenv.isLinux) utillinux + ++ lib.optional (stdenv.isDarwin) libtool + ++ buildInputs; + + inherit dontStrip; # Stripping may fail a build for some package deployments + inherit dontNpmInstall unpackPhase buildPhase; + + includeScript = includeDependencies { inherit dependencies; }; + pinpointDependenciesScript = pinpointDependenciesOfPackage args; + + passAsFile = [ "includeScript" "pinpointDependenciesScript" ]; + + installPhase = '' + mkdir -p $out/${packageName} + cd $out/${packageName} + + source $includeScriptPath + + # Create fake package.json to make the npm commands work properly + cp ${src}/package.json . + chmod 644 package.json + ${lib.optionalString bypassCache '' + if [ -f ${src}/package-lock.json ] + then + cp ${src}/package-lock.json . + fi + ''} + + # Go to the parent folder to make sure that all packages are pinpointed + cd .. + ${lib.optionalString (builtins.substring 0 1 packageName == "@") "cd .."} + + ${prepareAndInvokeNPM { inherit packageName bypassCache reconstructLock npmFlags production; }} + + # Expose the executables that were installed + cd .. + ${lib.optionalString (builtins.substring 0 1 packageName == "@") "cd .."} + + mv ${packageName} lib + ln -s $out/lib/node_modules/.bin $out/bin + ''; + } // extraArgs); + + # Builds a development shell + buildNodeShell = + { name + , packageName + , version + , src + , dependencies ? [] + , buildInputs ? [] + , production ? true + , npmFlags ? "" + , dontNpmInstall ? false + , bypassCache ? false + , reconstructLock ? false + , dontStrip ? true + , unpackPhase ? "true" + , buildPhase ? "true" + , ... }@args: + + let + nodeDependencies = buildNodeDependencies args; + in + stdenv.mkDerivation { + name = "node-shell-${name}-${version}"; + + buildInputs = [ python nodejs ] ++ lib.optional (stdenv.isLinux) utillinux ++ buildInputs; + buildCommand = '' + mkdir -p $out/bin + cat > $out/bin/shell <<EOF + #! ${stdenv.shell} -e + $shellHook + exec ${stdenv.shell} + EOF + chmod +x $out/bin/shell + ''; + + # Provide the dependencies in a development shell through the NODE_PATH environment variable + inherit nodeDependencies; + shellHook = lib.optionalString (dependencies != []) '' + export NODE_PATH=${nodeDependencies}/lib/node_modules + export PATH="${nodeDependencies}/bin:$PATH" + ''; + }; +in +{ + buildNodeSourceDist = lib.makeOverridable buildNodeSourceDist; + buildNodePackage = lib.makeOverridable buildNodePackage; + buildNodeDependencies = lib.makeOverridable buildNodeDependencies; + buildNodeShell = lib.makeOverridable buildNodeShell; +} diff --git a/pkgs/servers/mjolnir/update.sh b/pkgs/servers/mjolnir/update.sh new file mode 100755 index 000000000000..6c7b2fb417b3 --- /dev/null +++ b/pkgs/servers/mjolnir/update.sh @@ -0,0 +1,29 @@ +#!/usr/bin/env nix-shell +#!nix-shell -i bash -p curl common-updater-scripts nodePackages.node2nix gnused nix coreutils jq + +set -euo pipefail + +latestVersion="$(curl -s "https://api.github.com/repos/matrix-org/mjolnir/releases?per_page=1" | jq -r ".[0].tag_name" | sed 's/^v//')" +currentVersion=$(nix-instantiate --eval -E "with import ./. {}; mjolnir.version or (lib.getVersion mjolnir)" | tr -d '"') + +if [[ "$currentVersion" == "$latestVersion" ]]; then + echo "mjolnir is up-to-date: $currentVersion" + exit 0 +fi + +update-source-version mjolnir 0 0000000000000000000000000000000000000000000000000000000000000000 +update-source-version mjolnir "$latestVersion" + +# use patched source +store_src="$(nix-build . -A mjolnir.src --no-out-link)" + +cd "$(dirname "${BASH_SOURCE[0]}")" + +node2nix \ + --nodejs-12 \ + --development \ + --node-env ./node-env.nix \ + --output ./node-deps.nix \ + --input "$store_src/package.json" \ + --composition ./node-composition.nix + diff --git a/pkgs/servers/monitoring/grafana/default.nix b/pkgs/servers/monitoring/grafana/default.nix index 848bcaca4340..1ebac5327339 100644 --- a/pkgs/servers/monitoring/grafana/default.nix +++ b/pkgs/servers/monitoring/grafana/default.nix @@ -1,8 +1,8 @@ -{ lib, buildGoModule, fetchurl, fetchFromGitHub, nixosTests, tzdata }: +{ lib, buildGo117Module, fetchurl, fetchFromGitHub, nixosTests, tzdata, wire }: -buildGoModule rec { +buildGo117Module rec { pname = "grafana"; - version = "8.1.6"; + version = "8.2.3"; excludedPackages = "\\(alert_webhook_listener\\|clean-swagger\\|release_publisher\\|slow_proxy\\|slow_proxy_mac\\|macaron\\)"; @@ -10,17 +10,23 @@ buildGoModule rec { rev = "v${version}"; owner = "grafana"; repo = "grafana"; - sha256 = "sha256-PUVRFa3b+O2lY6q3vO+rLUcC+fx80iB78tt60f6Vugk="; + sha256 = "sha256-GC4pHwthsXu/+dXb1cBk5bC0O6NnyiChC+UWleq7JzA="; }; srcStatic = fetchurl { url = "https://dl.grafana.com/oss/release/grafana-${version}.linux-amd64.tar.gz"; - sha256 = "sha256-So9xzet9kPkjcDwNts3iXlCd+u2uiXTo0LVcLc8toyk="; + sha256 = "sha256-LOswYw0P3dy6arrmUbnzBU0ie2YcPtk6xqtp9CowG2s="; }; - vendorSha256 = "sha256-dn4sliRp58oZALZ8Iu7kE83ntkcMIU84Xr5WoeXlhCI="; + vendorSha256 = "sha256-yZbdUiuRNFRaXduOYps5ygiaUgvNXw+Ah4wZrfYcJlY="; + + nativeBuildInputs = [ wire ]; preBuild = '' + # Generate DI code that's required to compile the package. + # From https://github.com/grafana/grafana/blob/v8.2.3/Makefile#L33-L35 + wire gen -tags oss ./pkg/server + # The testcase makes an API call against grafana.com: # # --- Expected diff --git a/pkgs/servers/monitoring/loki/default.nix b/pkgs/servers/monitoring/loki/default.nix index d23a873ccecb..96879c3408b2 100644 --- a/pkgs/servers/monitoring/loki/default.nix +++ b/pkgs/servers/monitoring/loki/default.nix @@ -8,14 +8,14 @@ }: buildGoModule rec { - version = "2.3.0"; + version = "2.4.1"; pname = "grafana-loki"; src = fetchFromGitHub { rev = "v${version}"; owner = "grafana"; repo = "loki"; - sha256 = "sha256-Cxg3VRF4p/Kb6LyreGV0g+zPr15wplritSZgkbTiDI0="; + sha256 = "sha256-QLHhGAeTtXe/76uMombWBORXGvfaUQMGCgkeGCnI0Ag="; }; vendorSha256 = null; diff --git a/pkgs/servers/monitoring/mackerel-agent/default.nix b/pkgs/servers/monitoring/mackerel-agent/default.nix index a4d82ef8406c..13036f81de6d 100644 --- a/pkgs/servers/monitoring/mackerel-agent/default.nix +++ b/pkgs/servers/monitoring/mackerel-agent/default.nix @@ -2,20 +2,20 @@ buildGoModule rec { pname = "mackerel-agent"; - version = "0.72.2"; + version = "0.72.3"; src = fetchFromGitHub { owner = "mackerelio"; repo = pname; rev = "v${version}"; - sha256 = "sha256-oiY3L4aBF+QhpZDTkwTmWPLoTgm+RUYCov5+gOxJqew="; + sha256 = "sha256-o2+5kMHDigrLXjwdkMKSujW/Lov72WmRvw7/aew3s9w="; }; nativeBuildInputs = [ makeWrapper ]; checkInputs = lib.optionals (!stdenv.isDarwin) [ nettools ]; buildInputs = lib.optionals (!stdenv.isDarwin) [ iproute2 ]; - vendorSha256 = "sha256-dfBJXA1Lc4+TL1nIk4bZ4m4QEO1r29GPyGtZrE+LrZc="; + vendorSha256 = "sha256-h2z+R16XS3AJdG/4gZRLton1DKYrFElGXNjOaekAC0Q="; subPackages = [ "." ]; diff --git a/pkgs/servers/monitoring/prometheus/default.nix b/pkgs/servers/monitoring/prometheus/default.nix index 19136a397785..5cb326dab534 100644 --- a/pkgs/servers/monitoring/prometheus/default.nix +++ b/pkgs/servers/monitoring/prometheus/default.nix @@ -1,6 +1,9 @@ { stdenv , lib , go +, pkgs +, nodejs +, nodePackages , buildGoModule , fetchFromGitHub , mkYarnPackage @@ -9,27 +12,59 @@ }: let - version = "2.27.1"; + version = "2.30.3"; src = fetchFromGitHub { rev = "v${version}"; owner = "prometheus"; repo = "prometheus"; - sha256 = "0836ygyvld5skjycd7366i6vyf451s6cay5ng6c2fwq0skvp2gj2"; + sha256 = "1as6x5bsp7mxa4rp7jhyjlpcvzqm1zngnwvp73rc4rwhz8w8vm3k"; }; goPackagePath = "github.com/prometheus/prometheus"; - webui = mkYarnPackage { - src = "${src}/web/ui/react-app"; - packageJSON = ./webui-package.json; - yarnNix = ./webui-yarndeps.nix; + codemirrorNode = import ./webui/codemirror-promql { + inherit pkgs nodejs; + inherit (stdenv.hostPlatform) system; + }; + webuiNode = import ./webui/webui { + inherit pkgs nodejs; + inherit (stdenv.hostPlatform) system; + }; - # The standard yarn2nix directory management causes build failures with - # Prometheus's webui due to using relative imports into node_modules. Use - # an extremely simplified version of it instead. - configurePhase = "ln -s $node_modules node_modules"; - buildPhase = "PUBLIC_URL=. yarn build"; + codemirror = stdenv.mkDerivation { + name = "prometheus-webui-codemirror-promql"; + src = "${src}/web/ui/module/codemirror-promql"; + + buildInputs = [ nodejs nodePackages.typescript codemirrorNode.nodeDependencies ]; + + configurePhase = '' + ln -s ${codemirrorNode.nodeDependencies}/lib/node_modules node_modules + ''; + buildPhase = '' + PUBLIC_URL=. npm run build + ''; + installPhase = '' + mkdir -p $out + mv lib dist $out + ''; + distPhase = ":"; + }; + + + webui = stdenv.mkDerivation { + name = "prometheus-webui"; + src = "${src}/web/ui/react-app"; + + buildInputs = [ nodejs webuiNode.nodeDependencies ]; + + # create `node_modules/.cache` dir (we need writeable .cache) + # and then copy the rest over. + configurePhase = '' + mkdir -p node_modules/{.cache,.bin} + cp -a ${webuiNode.nodeDependencies}/lib/node_modules/. node_modules + ''; + buildPhase = "PUBLIC_URL=. npm run build"; installPhase = "mv build $out"; distPhase = "true"; }; @@ -38,13 +73,23 @@ buildGoModule rec { pname = "prometheus"; inherit src version; - vendorSha256 = "0dq3p7hga7m1aq78har5rr136hlb0kp8zhh2wzqlkxrk1f33w54p"; + vendorSha256 = "0qyv8vybx5wg8k8hwvrpp4hz9wv6g4kf9sq5v5qc2bxx6apc0s9r"; excludedPackages = [ "documentation/prometheus-mixin" ]; + nativeBuildInputs = [ nodejs ]; + postPatch = '' - ln -s ${webui.node_modules} web/ui/react-app/node_modules + # we don't want this anyways, as we + # build modules for them + echo "exit 0" > web/ui/module/build.sh + + ln -s ${webuiNode.nodeDependencies}/lib/node_modules web/ui/react-app/node_modules ln -s ${webui} web/ui/static/react + + # webui-codemirror + ln -s ${codemirror}/dist web/ui/module/codemirror-promql/dist + ln -s ${codemirror}/lib web/ui/module/codemirror-promql/lib ''; tags = [ "builtinassets" ]; diff --git a/pkgs/servers/monitoring/prometheus/update-webui-deps.sh b/pkgs/servers/monitoring/prometheus/update-webui-deps.sh deleted file mode 100755 index 812f6d5d9cfc..000000000000 --- a/pkgs/servers/monitoring/prometheus/update-webui-deps.sh +++ /dev/null @@ -1,20 +0,0 @@ -#!/usr/bin/env nix-shell -#!nix-shell -I nixpkgs=../../../.. -i bash -p wget yarn2nix-moretea.yarn2nix - -# This script is based upon: -# pkgs/applications/networking/instant-messengers/riot/update-riot-desktop.sh - -set -euo pipefail - -if [ "$#" -ne 1 ] || [[ "$1" == -* ]]; then - echo "Regenerates the Yarn dependency lock files for the prometheus package." - echo "Usage: $0 <git release tag>" - exit 1 -fi - -PROM_WEB_SRC="https://raw.githubusercontent.com/prometheus/prometheus/$1" - -wget "$PROM_WEB_SRC/web/ui/react-app/package.json" -O webui-package.json -wget "$PROM_WEB_SRC/web/ui/react-app/yarn.lock" -O yarn.lock -yarn2nix --lockfile=yarn.lock > webui-yarndeps.nix -rm yarn.lock diff --git a/pkgs/servers/monitoring/prometheus/webui-yarndeps.nix b/pkgs/servers/monitoring/prometheus/webui-yarndeps.nix deleted file mode 100644 index c8c4e50e0ebd..000000000000 --- a/pkgs/servers/monitoring/prometheus/webui-yarndeps.nix +++ /dev/null @@ -1,12773 +0,0 @@ -{ fetchurl, fetchgit, linkFarm, runCommand, gnutar }: rec { - offline_cache = linkFarm "offline" packages; - packages = [ - { - name = "_babel_code_frame___code_frame_7.8.3.tgz"; - path = fetchurl { - name = "_babel_code_frame___code_frame_7.8.3.tgz"; - url = "https://registry.yarnpkg.com/@babel/code-frame/-/code-frame-7.8.3.tgz"; - sha1 = "33e25903d7481181534e12ec0a25f16b6fcf419e"; - }; - } - { - name = "_babel_code_frame___code_frame_7.12.13.tgz"; - path = fetchurl { - name = "_babel_code_frame___code_frame_7.12.13.tgz"; - url = "https://registry.yarnpkg.com/@babel/code-frame/-/code-frame-7.12.13.tgz"; - sha1 = "dcfc826beef65e75c50e21d3837d7d95798dd658"; - }; - } - { - name = "_babel_compat_data___compat_data_7.14.0.tgz"; - path = fetchurl { - name = "_babel_compat_data___compat_data_7.14.0.tgz"; - url = "https://registry.yarnpkg.com/@babel/compat-data/-/compat-data-7.14.0.tgz"; - sha1 = "a901128bce2ad02565df95e6ecbf195cf9465919"; - }; - } - { - name = "_babel_core___core_7.9.0.tgz"; - path = fetchurl { - name = "_babel_core___core_7.9.0.tgz"; - url = "https://registry.yarnpkg.com/@babel/core/-/core-7.9.0.tgz"; - sha1 = "ac977b538b77e132ff706f3b8a4dbad09c03c56e"; - }; - } - { - name = "_babel_core___core_7.14.0.tgz"; - path = fetchurl { - name = "_babel_core___core_7.14.0.tgz"; - url = "https://registry.yarnpkg.com/@babel/core/-/core-7.14.0.tgz"; - sha1 = "47299ff3ec8d111b493f1a9d04bf88c04e728d88"; - }; - } - { - name = "_babel_generator___generator_7.14.1.tgz"; - path = fetchurl { - name = "_babel_generator___generator_7.14.1.tgz"; - url = "https://registry.yarnpkg.com/@babel/generator/-/generator-7.14.1.tgz"; - sha1 = "1f99331babd65700183628da186f36f63d615c93"; - }; - } - { - name = "_babel_helper_annotate_as_pure___helper_annotate_as_pure_7.12.13.tgz"; - path = fetchurl { - name = "_babel_helper_annotate_as_pure___helper_annotate_as_pure_7.12.13.tgz"; - url = "https://registry.yarnpkg.com/@babel/helper-annotate-as-pure/-/helper-annotate-as-pure-7.12.13.tgz"; - sha1 = "0f58e86dfc4bb3b1fcd7db806570e177d439b6ab"; - }; - } - { - name = "_babel_helper_builder_binary_assignment_operator_visitor___helper_builder_binary_assignment_operator_visitor_7.12.13.tgz"; - path = fetchurl { - name = "_babel_helper_builder_binary_assignment_operator_visitor___helper_builder_binary_assignment_operator_visitor_7.12.13.tgz"; - url = "https://registry.yarnpkg.com/@babel/helper-builder-binary-assignment-operator-visitor/-/helper-builder-binary-assignment-operator-visitor-7.12.13.tgz"; - sha1 = "6bc20361c88b0a74d05137a65cac8d3cbf6f61fc"; - }; - } - { - name = "_babel_helper_compilation_targets___helper_compilation_targets_7.13.16.tgz"; - path = fetchurl { - name = "_babel_helper_compilation_targets___helper_compilation_targets_7.13.16.tgz"; - url = "https://registry.yarnpkg.com/@babel/helper-compilation-targets/-/helper-compilation-targets-7.13.16.tgz"; - sha1 = "6e91dccf15e3f43e5556dffe32d860109887563c"; - }; - } - { - name = "_babel_helper_create_class_features_plugin___helper_create_class_features_plugin_7.14.1.tgz"; - path = fetchurl { - name = "_babel_helper_create_class_features_plugin___helper_create_class_features_plugin_7.14.1.tgz"; - url = "https://registry.yarnpkg.com/@babel/helper-create-class-features-plugin/-/helper-create-class-features-plugin-7.14.1.tgz"; - sha1 = "1fe11b376f3c41650ad9fedc665b0068722ea76c"; - }; - } - { - name = "_babel_helper_create_regexp_features_plugin___helper_create_regexp_features_plugin_7.12.17.tgz"; - path = fetchurl { - name = "_babel_helper_create_regexp_features_plugin___helper_create_regexp_features_plugin_7.12.17.tgz"; 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Do not edit! + +{pkgs ? import <nixpkgs> { + inherit system; + }, system ? builtins.currentSystem, nodejs ? pkgs."nodejs-12_x"}: + +let + nodeEnv = import ../../../../../development/node-packages/node-env.nix { + inherit (pkgs) stdenv lib python2 runCommand writeTextFile; + inherit pkgs nodejs; + libtool = if pkgs.stdenv.isDarwin then pkgs.darwin.cctools else null; + }; +in +import ./node-packages.nix { + inherit (pkgs) fetchurl nix-gitignore stdenv lib fetchgit; + inherit nodeEnv; +} diff --git a/pkgs/servers/monitoring/prometheus/webui/codemirror-promql/node-packages.nix b/pkgs/servers/monitoring/prometheus/webui/codemirror-promql/node-packages.nix new file mode 100644 index 000000000000..0dd3cfeb0a93 --- /dev/null +++ b/pkgs/servers/monitoring/prometheus/webui/codemirror-promql/node-packages.nix @@ -0,0 +1,9436 @@ +# This file has been generated by node2nix 1.9.0. Do not edit! + +{nodeEnv, fetchurl, fetchgit, nix-gitignore, stdenv, lib, globalBuildInputs ? []}: + +let + sources = { + "@babel/code-frame-7.12.13" = { + name = "_at_babel_slash_code-frame"; + packageName = "@babel/code-frame"; + version = "7.12.13"; + src = fetchurl { + url = "https://registry.npmjs.org/@babel/code-frame/-/code-frame-7.12.13.tgz"; + sha512 = "HV1Cm0Q3ZrpCR93tkWOYiuYIgLxZXZFVG2VgK+MBWjUqZTundupbfx2aXarXuw5Ko5aMcjtJgbSs4vUGBS5v6g=="; + }; + }; + "@babel/compat-data-7.13.15" = { + name = "_at_babel_slash_compat-data"; + packageName = "@babel/compat-data"; + version = "7.13.15"; + src = fetchurl { + url = "https://registry.npmjs.org/@babel/compat-data/-/compat-data-7.13.15.tgz"; + sha512 = "ltnibHKR1VnrU4ymHyQ/CXtNXI6yZC0oJThyW78Hft8XndANwi+9H+UIklBDraIjFEJzw8wmcM427oDd9KS5wA=="; + }; + }; + "@babel/core-7.13.15" = { + name = "_at_babel_slash_core"; + packageName = "@babel/core"; + version = "7.13.15"; + src = fetchurl { + url = "https://registry.npmjs.org/@babel/core/-/core-7.13.15.tgz"; + sha512 = 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sources."css-select-1.2.0" + sources."css-what-2.1.3" + sources."cyclist-1.0.1" + sources."debug-4.3.1" + sources."decamelize-1.2.0" + sources."decode-uri-component-0.2.0" + sources."deep-eql-3.0.1" + sources."deep-equal-1.1.1" + sources."deep-is-0.1.3" + sources."default-gateway-4.2.0" + (sources."default-require-extensions-3.0.0" // { + dependencies = [ + sources."strip-bom-4.0.0" + ]; + }) + sources."define-properties-1.1.3" + (sources."define-property-2.0.2" // { + dependencies = [ + sources."is-accessor-descriptor-1.0.0" + sources."is-data-descriptor-1.0.0" + sources."is-descriptor-1.0.2" + ]; + }) + sources."del-4.1.1" + sources."depd-1.1.2" + sources."des.js-1.0.1" + sources."destroy-1.0.4" + sources."detect-file-1.0.0" + sources."detect-node-2.0.4" + sources."diff-4.0.2" + (sources."diffie-hellman-5.0.3" // { + dependencies = [ + sources."bn.js-4.11.9" + ]; + }) + sources."dns-equal-1.0.0" + sources."dns-packet-1.3.1" + sources."dns-txt-2.0.2" + sources."doctrine-3.0.0" + sources."dom-converter-0.2.0" + (sources."dom-serializer-0.2.2" // { + dependencies = [ + sources."domelementtype-2.1.0" + ]; + }) + sources."domain-browser-1.2.0" + sources."domelementtype-1.3.1" + sources."domhandler-2.4.2" + sources."domutils-1.5.1" + (sources."dot-case-3.0.4" // { + dependencies = [ + sources."tslib-2.0.3" + ]; + }) + (sources."duplexify-3.7.1" // { + dependencies = [ + sources."readable-stream-2.3.7" + sources."safe-buffer-5.1.2" + sources."string_decoder-1.1.1" + ]; + }) + sources."ee-first-1.1.1" + sources."electron-to-chromium-1.3.712" + (sources."elliptic-6.5.4" // { + dependencies = [ + sources."bn.js-4.11.9" + ]; + }) + sources."emoji-regex-8.0.0" + sources."emojis-list-3.0.0" + sources."encodeurl-1.0.2" + sources."end-of-stream-1.4.4" + sources."enhanced-resolve-4.3.0" + sources."entities-2.1.0" + sources."errno-0.1.7" + sources."error-ex-1.3.2" + sources."es-abstract-1.18.0-next.1" + sources."es-to-primitive-1.2.1" + sources."es6-error-4.1.1" + sources."escalade-3.1.1" + sources."escape-html-1.0.3" + sources."escape-string-regexp-1.0.5" + (sources."eslint-6.8.0" // { + dependencies = [ + sources."eslint-utils-1.4.3" + sources."regexpp-2.0.1" + sources."semver-6.3.0" + ]; + }) + sources."eslint-config-prettier-6.15.0" + (sources."eslint-import-resolver-node-0.3.4" // { + dependencies = [ + sources."debug-2.6.9" + sources."ms-2.0.0" + ]; + }) + (sources."eslint-module-utils-2.6.0" // { + dependencies = [ + sources."debug-2.6.9" + sources."ms-2.0.0" + ]; + }) + sources."eslint-plugin-flowtype-5.2.0" + (sources."eslint-plugin-import-2.22.1" // { + dependencies = [ + sources."debug-2.6.9" + sources."doctrine-1.5.0" + sources."ms-2.0.0" + ]; + }) + sources."eslint-plugin-prettier-3.2.0" + sources."eslint-scope-5.1.1" + sources."eslint-utils-2.1.0" + sources."eslint-visitor-keys-1.3.0" + sources."espree-6.2.1" + sources."esprima-4.0.1" + (sources."esquery-1.3.1" // { + dependencies = [ + sources."estraverse-5.2.0" + ]; + }) + 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sources."is-data-descriptor-1.0.0" + sources."is-descriptor-1.0.2" + ]; + }) + sources."fast-deep-equal-3.1.3" + sources."fast-diff-1.2.0" + sources."fast-json-stable-stringify-2.1.0" + sources."fast-levenshtein-2.0.6" + sources."faye-websocket-0.10.0" + sources."figgy-pudding-3.5.2" + sources."figures-3.2.0" + sources."file-entry-cache-5.0.1" + sources."fill-range-7.0.1" + (sources."finalhandler-1.1.2" // { + dependencies = [ + sources."debug-2.6.9" + sources."ms-2.0.0" + ]; + }) + (sources."find-cache-dir-2.1.0" // { + dependencies = [ + sources."find-up-3.0.0" + sources."locate-path-3.0.0" + sources."p-limit-2.3.0" + sources."p-locate-3.0.0" + sources."p-try-2.2.0" + sources."pkg-dir-3.0.0" + ]; + }) + sources."find-up-2.1.0" + (sources."findup-sync-3.0.0" // { + dependencies = [ + (sources."braces-2.3.2" // { + dependencies = [ + sources."extend-shallow-2.0.1" + ]; + }) + (sources."fill-range-4.0.0" // { + dependencies = [ + sources."extend-shallow-2.0.1" + ]; + }) + (sources."is-number-3.0.0" // { + dependencies = [ + sources."kind-of-3.2.2" + ]; + }) + sources."micromatch-3.1.10" + sources."to-regex-range-2.1.1" + ]; + }) + sources."flat-5.0.2" + (sources."flat-cache-2.0.1" // { + dependencies = [ + sources."rimraf-2.6.3" + ]; + }) + sources."flatted-2.0.2" + (sources."flush-write-stream-1.1.1" // { + dependencies = [ + sources."readable-stream-2.3.7" + sources."safe-buffer-5.1.2" + sources."string_decoder-1.1.1" + ]; + }) + sources."follow-redirects-1.13.0" + sources."for-in-1.0.2" + (sources."foreground-child-2.0.0" // { + dependencies = [ + sources."cross-spawn-7.0.3" + sources."path-key-3.1.1" + sources."shebang-command-2.0.0" + sources."shebang-regex-3.0.0" + sources."which-2.0.2" + ]; + }) + sources."forwarded-0.1.2" + sources."fragment-cache-0.2.1" + sources."fresh-0.5.2" + (sources."from2-2.3.0" // { + dependencies = [ + sources."readable-stream-2.3.7" + sources."safe-buffer-5.1.2" + sources."string_decoder-1.1.1" + ]; + }) + sources."fromentries-1.3.2" + (sources."fs-write-stream-atomic-1.0.10" // { + dependencies = [ + sources."readable-stream-2.3.7" + sources."safe-buffer-5.1.2" + sources."string_decoder-1.1.1" + ]; + }) + sources."fs.realpath-1.0.0" + sources."fsevents-2.1.3" + sources."function-bind-1.1.1" + sources."functional-red-black-tree-1.0.1" + sources."gensync-1.0.0-beta.2" + sources."get-caller-file-2.0.5" + sources."get-func-name-2.0.0" + sources."get-intrinsic-1.0.1" + sources."get-package-type-0.1.0" + sources."get-stdin-6.0.0" + sources."get-stream-4.1.0" + sources."get-value-2.0.6" + sources."glob-7.1.6" + sources."glob-parent-5.1.1" + (sources."global-modules-2.0.0" // { + dependencies = [ + sources."global-prefix-3.0.0" + ]; + }) + sources."global-prefix-1.0.2" + sources."globals-12.4.0" + (sources."globby-6.1.0" // { + dependencies = [ + sources."pify-2.3.0" + ]; + }) + sources."graceful-fs-4.2.4" + sources."growl-1.10.5" + sources."handle-thing-2.0.1" + sources."has-1.0.3" + sources."has-flag-3.0.0" + sources."has-symbols-1.0.1" + sources."has-value-1.0.0" + (sources."has-values-1.0.0" // { + dependencies = [ + (sources."is-number-3.0.0" // { + dependencies = [ + sources."kind-of-3.2.2" + ]; + }) + sources."kind-of-4.0.0" + ]; + }) + sources."hash-base-3.1.0" + sources."hash.js-1.1.7" + (sources."hasha-5.2.2" // { + dependencies = [ + sources."is-stream-2.0.0" + ]; + }) + sources."he-1.2.0" + sources."hmac-drbg-1.0.1" + sources."homedir-polyfill-1.0.3" + sources."hosted-git-info-2.8.9" + (sources."hpack.js-2.1.6" // { + dependencies = [ + sources."readable-stream-2.3.7" + sources."safe-buffer-5.1.2" + sources."string_decoder-1.1.1" + ]; + }) + sources."html-entities-1.3.1" + sources."html-escaper-2.0.2" + sources."html-minifier-terser-5.1.1" + sources."html-webpack-plugin-4.5.0" + (sources."htmlparser2-3.10.1" // { + dependencies = [ + sources."entities-1.1.2" + ]; + }) + sources."http-deceiver-1.2.7" + (sources."http-errors-1.7.2" // { + dependencies = [ 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sources."p-try-2.2.0" + sources."pkg-dir-3.0.0" + ]; + }) + sources."imurmurhash-0.1.4" + sources."indent-string-4.0.0" + sources."infer-owner-1.0.4" + sources."inflight-1.0.6" + sources."inherits-2.0.4" + sources."ini-1.3.8" + (sources."inquirer-7.3.3" // { + dependencies = [ + sources."ansi-styles-4.3.0" + sources."chalk-4.1.0" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + sources."has-flag-4.0.0" + sources."strip-ansi-6.0.0" + sources."supports-color-7.2.0" + ]; + }) + sources."internal-ip-4.3.0" + sources."interpret-1.4.0" + sources."ip-1.1.5" + sources."ip-regex-2.1.0" + sources."ipaddr.js-1.9.1" + sources."is-absolute-url-3.0.3" + (sources."is-accessor-descriptor-0.1.6" // { + dependencies = [ + sources."kind-of-3.2.2" + ]; + }) + sources."is-arguments-1.0.4" + sources."is-arrayish-0.2.1" + sources."is-binary-path-2.1.0" + sources."is-buffer-1.1.6" + sources."is-callable-1.2.2" + sources."is-core-module-2.2.0" + (sources."is-data-descriptor-0.1.4" // { + dependencies = [ + sources."kind-of-3.2.2" + ]; + }) + sources."is-date-object-1.0.2" + (sources."is-descriptor-0.1.6" // { + dependencies = [ + sources."kind-of-5.1.0" + ]; + }) + sources."is-extendable-0.1.1" + sources."is-extglob-2.1.1" + sources."is-fullwidth-code-point-3.0.0" + sources."is-glob-4.0.1" + sources."is-negative-zero-2.0.0" + sources."is-number-7.0.0" + sources."is-path-cwd-2.2.0" + sources."is-path-in-cwd-2.1.0" + sources."is-path-inside-2.1.0" + sources."is-plain-obj-2.1.0" + sources."is-plain-object-2.0.4" + sources."is-regex-1.1.1" + sources."is-stream-1.1.0" + sources."is-string-1.0.5" + sources."is-symbol-1.0.3" + sources."is-typedarray-1.0.0" + sources."is-windows-1.0.2" + sources."is-wsl-1.1.0" + sources."isarray-1.0.0" + sources."isexe-2.0.0" + sources."isobject-3.0.1" + sources."isomorphic-fetch-3.0.0" + sources."istanbul-lib-coverage-3.0.0" + sources."istanbul-lib-hook-3.0.0" + (sources."istanbul-lib-instrument-4.0.3" // { + dependencies = [ + sources."semver-6.3.0" + ]; + }) + (sources."istanbul-lib-processinfo-2.0.2" // { + dependencies = [ + sources."cross-spawn-7.0.3" + sources."make-dir-3.1.0" + sources."p-map-3.0.0" + sources."path-key-3.1.1" + sources."rimraf-3.0.2" + sources."semver-6.3.0" + sources."shebang-command-2.0.0" + sources."shebang-regex-3.0.0" + sources."which-2.0.2" + ]; + }) + (sources."istanbul-lib-report-3.0.0" // { + dependencies = [ + sources."has-flag-4.0.0" + sources."make-dir-3.1.0" + sources."semver-6.3.0" + sources."supports-color-7.2.0" + ]; + }) + sources."istanbul-lib-source-maps-4.0.0" + sources."istanbul-reports-3.0.2" + sources."js-tokens-4.0.0" + sources."js-yaml-3.14.0" + sources."jsesc-2.5.2" + sources."json-parse-better-errors-1.0.2" + sources."json-schema-traverse-0.4.1" + sources."json-stable-stringify-without-jsonify-1.0.1" + sources."json-stringify-safe-5.0.1" + sources."json3-3.3.3" + sources."json5-1.0.1" + sources."killable-1.0.1" + sources."kind-of-6.0.3" + sources."levn-0.3.0" 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(sources."memory-fs-0.5.0" // { + dependencies = [ + sources."readable-stream-2.3.7" + sources."safe-buffer-5.1.2" + sources."string_decoder-1.1.1" + ]; + }) + sources."merge-descriptors-1.0.1" + sources."methods-1.1.2" + sources."micromatch-4.0.2" + (sources."miller-rabin-4.0.1" // { + dependencies = [ + sources."bn.js-4.11.9" + ]; + }) + sources."mime-1.6.0" + sources."mime-db-1.44.0" + sources."mime-types-2.1.27" + sources."mimic-fn-2.1.0" + sources."minimalistic-assert-1.0.1" + sources."minimalistic-crypto-utils-1.0.1" + sources."minimatch-3.0.4" + sources."minimist-1.2.5" + sources."mississippi-3.0.0" + (sources."mixin-deep-1.3.2" // { + dependencies = [ + sources."is-extendable-1.0.1" + ]; + }) + sources."mkdirp-0.5.5" + (sources."mocha-8.2.1" // { + dependencies = [ + sources."debug-4.2.0" + sources."escape-string-regexp-4.0.0" + sources."find-up-5.0.0" + sources."has-flag-4.0.0" + sources."locate-path-6.0.0" + sources."p-limit-3.1.0" + sources."p-locate-5.0.0" + sources."path-exists-4.0.0" + sources."supports-color-7.2.0" + sources."which-2.0.2" + ]; + }) + sources."move-concurrently-1.0.1" + sources."ms-2.1.2" + sources."multicast-dns-6.2.3" + sources."multicast-dns-service-types-1.1.0" + sources."mute-stream-0.0.8" + sources."nanoid-3.1.12" + sources."nanomatch-1.2.13" + sources."natural-compare-1.4.0" + sources."negotiator-0.6.2" + sources."neo-async-2.6.2" + sources."nice-try-1.0.5" + (sources."no-case-3.0.4" // { + dependencies = [ + sources."tslib-2.0.3" + ]; + }) + sources."nock-13.0.11" + sources."node-fetch-2.6.1" + sources."node-forge-0.10.0" + (sources."node-libs-browser-2.2.1" // { + dependencies = [ + sources."punycode-1.4.1" + (sources."readable-stream-2.3.7" // { + dependencies = [ + sources."string_decoder-1.1.1" + ]; + }) + sources."safe-buffer-5.1.2" + ]; + }) + sources."node-preload-0.2.1" + sources."node-releases-1.1.71" + (sources."normalize-package-data-2.5.0" // { + dependencies = [ + sources."semver-5.7.1" + ]; + }) + sources."normalize-path-3.0.0" + sources."npm-run-path-2.0.2" + sources."nth-check-1.0.2" + (sources."nyc-15.1.0" // { + dependencies = [ + sources."ansi-styles-4.3.0" + sources."cliui-6.0.0" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + sources."find-cache-dir-3.3.1" + sources."find-up-4.1.0" + sources."locate-path-5.0.0" + sources."make-dir-3.1.0" + sources."p-limit-2.3.0" + sources."p-locate-4.1.0" + sources."p-map-3.0.0" + sources."p-try-2.2.0" + sources."path-exists-4.0.0" + sources."pkg-dir-4.2.0" + sources."resolve-from-5.0.0" + sources."rimraf-3.0.2" + sources."semver-6.3.0" + sources."strip-ansi-6.0.0" + sources."wrap-ansi-6.2.0" + sources."yargs-15.4.1" + sources."yargs-parser-18.1.3" + ]; + }) + sources."object-assign-4.1.1" + (sources."object-copy-0.1.0" // { + dependencies = [ + sources."define-property-0.2.5" + sources."kind-of-3.2.2" + ]; + }) + sources."object-inspect-1.9.0" + sources."object-is-1.1.4" + sources."object-keys-1.1.1" + sources."object-visit-1.0.1" + sources."object.assign-4.1.2" + sources."object.getownpropertydescriptors-2.1.1" + sources."object.pick-1.3.0" + sources."object.values-1.1.2" + sources."obuf-1.1.2" + sources."on-finished-2.3.0" + sources."on-headers-1.0.2" + sources."once-1.4.0" + sources."onetime-5.1.2" + sources."opn-5.5.0" + sources."optionator-0.8.3" + sources."original-1.0.2" + sources."os-browserify-0.3.0" + sources."os-tmpdir-1.0.2" + sources."p-finally-1.0.0" + sources."p-limit-1.3.0" + sources."p-locate-2.0.0" + sources."p-map-2.1.0" + sources."p-retry-3.0.1" + sources."p-try-1.0.0" + sources."package-hash-4.0.0" + sources."pako-1.0.11" + (sources."parallel-transform-1.2.0" // { + dependencies = [ + sources."readable-stream-2.3.7" + sources."safe-buffer-5.1.2" + sources."string_decoder-1.1.1" + ]; + }) + (sources."param-case-3.0.4" // { + dependencies = [ + sources."tslib-2.0.3" + ]; + }) + sources."parent-module-1.0.1" + sources."parse-asn1-5.1.6" + sources."parse-json-2.2.0" 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sources."process-nextick-args-2.0.1" + sources."process-on-spawn-1.0.0" + sources."progress-2.0.3" + sources."promise-inflight-1.0.1" + sources."propagate-2.0.1" + sources."proxy-addr-2.0.6" + sources."prr-1.0.1" + (sources."public-encrypt-4.0.3" // { + dependencies = [ + sources."bn.js-4.11.9" + ]; + }) + sources."pump-3.0.0" + (sources."pumpify-1.5.1" // { + dependencies = [ + sources."pump-2.0.1" + ]; + }) + sources."punycode-2.1.1" + sources."qs-6.7.0" + sources."querystring-0.2.0" + sources."querystring-es3-0.2.1" + sources."querystringify-2.2.0" + sources."randombytes-2.1.0" + sources."randomfill-1.0.4" + sources."range-parser-1.2.1" + (sources."raw-body-2.4.0" // { + dependencies = [ + sources."bytes-3.1.0" + ]; + }) + sources."read-pkg-2.0.0" + sources."read-pkg-up-2.0.0" + sources."readable-stream-3.6.0" + sources."readdirp-3.5.0" + sources."regex-not-1.0.2" + (sources."regexp.prototype.flags-1.3.0" // { + dependencies = [ + sources."es-abstract-1.17.7" + ]; + }) + sources."regexpp-3.1.0" + sources."relateurl-0.2.7" + sources."release-zalgo-1.0.0" + sources."remove-trailing-separator-1.1.0" + (sources."renderkid-2.0.4" // { + dependencies = [ + sources."ansi-regex-2.1.1" + sources."strip-ansi-3.0.1" + ]; + }) + sources."repeat-element-1.1.3" + sources."repeat-string-1.6.1" + sources."require-directory-2.1.1" + sources."require-main-filename-2.0.0" + sources."requires-port-1.0.0" + sources."resolve-1.19.0" + (sources."resolve-cwd-2.0.0" // { + dependencies = [ + sources."resolve-from-3.0.0" + ]; + }) + (sources."resolve-dir-1.0.1" // { + dependencies = [ + sources."global-modules-1.0.0" + ]; + }) + sources."resolve-from-4.0.0" + sources."resolve-url-0.2.1" + sources."restore-cursor-3.1.0" + sources."ret-0.1.15" + sources."retry-0.12.0" + sources."rimraf-2.7.1" + sources."ripemd160-2.0.2" + sources."run-async-2.4.1" + sources."run-queue-1.0.3" + sources."rxjs-6.6.3" + sources."safe-buffer-5.2.1" + sources."safe-regex-1.1.0" + sources."safer-buffer-2.1.2" + sources."schema-utils-1.0.0" + sources."select-hose-2.0.0" + sources."selfsigned-1.10.8" + sources."semver-7.3.4" + (sources."send-0.17.1" // { + dependencies = [ + (sources."debug-2.6.9" // { + dependencies = [ + sources."ms-2.0.0" + ]; + }) + sources."ms-2.1.1" + ]; + }) + sources."serialize-javascript-5.0.1" + (sources."serve-index-1.9.1" // { + dependencies = [ + sources."debug-2.6.9" + sources."http-errors-1.6.3" + sources."inherits-2.0.3" + sources."ms-2.0.0" + sources."setprototypeof-1.1.0" + ]; + }) + sources."serve-static-1.14.1" + sources."set-blocking-2.0.0" + (sources."set-value-2.0.1" // { + dependencies = [ + sources."extend-shallow-2.0.1" + ]; + }) + sources."setimmediate-1.0.5" + sources."setprototypeof-1.1.1" + sources."sha.js-2.4.11" + sources."shebang-command-1.2.0" + sources."shebang-regex-1.0.0" + sources."signal-exit-3.0.3" + (sources."slice-ansi-2.1.0" // { + dependencies = [ + sources."is-fullwidth-code-point-2.0.0" + ]; + }) + (sources."snapdragon-0.8.2" // { + dependencies = [ + sources."debug-2.6.9" + sources."define-property-0.2.5" + sources."extend-shallow-2.0.1" + sources."ms-2.0.0" + sources."source-map-0.5.7" + ]; + }) + (sources."snapdragon-node-2.1.1" // { + dependencies = [ + sources."define-property-1.0.0" + sources."is-accessor-descriptor-1.0.0" + sources."is-data-descriptor-1.0.0" + sources."is-descriptor-1.0.2" + ]; + }) + (sources."snapdragon-util-3.0.1" // { + dependencies = [ + sources."kind-of-3.2.2" + ]; + }) + sources."sockjs-0.3.20" + (sources."sockjs-client-1.4.0" // { + dependencies = [ + sources."debug-3.2.7" + sources."faye-websocket-0.11.3" + ]; + }) + sources."source-list-map-2.0.1" + sources."source-map-0.6.1" + sources."source-map-resolve-0.5.3" + sources."source-map-support-0.5.19" + sources."source-map-url-0.4.0" + (sources."spawn-wrap-2.0.0" // { + dependencies = [ + sources."make-dir-3.1.0" + sources."rimraf-3.0.2" + sources."semver-6.3.0" + sources."which-2.0.2" + ]; + }) + sources."spdx-correct-3.1.1" + sources."spdx-exceptions-2.3.0" + sources."spdx-expression-parse-3.0.1" + sources."spdx-license-ids-3.0.7" + sources."spdy-4.0.2" + sources."spdy-transport-3.0.0" + sources."split-string-3.1.0" + sources."sprintf-js-1.0.3" + sources."ssri-6.0.2" + (sources."static-extend-0.1.2" // { + dependencies = [ + sources."define-property-0.2.5" + ]; + }) + sources."statuses-1.5.0" + (sources."stream-browserify-2.0.2" // { + dependencies = [ + sources."readable-stream-2.3.7" + sources."safe-buffer-5.1.2" + sources."string_decoder-1.1.1" + ]; + }) + sources."stream-each-1.2.3" + sources."stream-events-1.0.5" + (sources."stream-http-2.8.3" // { + dependencies = [ + sources."readable-stream-2.3.7" + sources."safe-buffer-5.1.2" + sources."string_decoder-1.1.1" + ]; + }) + sources."stream-shift-1.0.1" + sources."string-natural-compare-3.0.1" + (sources."string-width-4.2.0" // { + dependencies = [ + sources."strip-ansi-6.0.0" + ]; + }) + sources."string.prototype.trimend-1.0.3" + sources."string.prototype.trimstart-1.0.3" + sources."string_decoder-1.3.0" + (sources."strip-ansi-5.2.0" // { + dependencies = [ + sources."ansi-regex-4.1.0" + ]; + }) + sources."strip-bom-3.0.0" + sources."strip-eof-1.0.0" + sources."strip-json-comments-3.1.1" + sources."stubs-3.0.0" + sources."style-mod-4.0.0" + sources."supports-color-5.5.0" + (sources."table-5.4.6" // { + dependencies = [ + sources."emoji-regex-7.0.3" + sources."is-fullwidth-code-point-2.0.0" + sources."string-width-3.1.0" + ]; + }) + sources."tapable-1.1.3" + sources."teeny-request-6.0.1" + (sources."terser-4.8.0" // { + dependencies = [ + sources."commander-2.20.3" + ]; + }) + (sources."terser-webpack-plugin-1.4.5" // { + dependencies = [ + sources."serialize-javascript-4.0.0" + ]; + }) + sources."test-exclude-6.0.0" + sources."text-table-0.2.0" + sources."through-2.3.8" + (sources."through2-2.0.5" // { + dependencies = [ + sources."readable-stream-2.3.7" + sources."safe-buffer-5.1.2" + sources."string_decoder-1.1.1" + ]; + }) + sources."thunky-1.1.0" + sources."timers-browserify-2.0.12" + sources."tmp-0.0.33" + sources."to-arraybuffer-1.0.1" + sources."to-fast-properties-2.0.0" + (sources."to-object-path-0.3.0" // { + dependencies = [ + sources."kind-of-3.2.2" + ]; + }) + sources."to-regex-3.0.2" + sources."to-regex-range-5.0.1" + sources."toidentifier-1.0.0" + (sources."ts-loader-7.0.5" // { + dependencies = [ + sources."semver-6.3.0" + ]; + }) + (sources."ts-mocha-8.0.0" // { + dependencies = [ + sources."diff-3.5.0" + sources."ts-node-7.0.1" + sources."yn-2.0.0" + ]; + }) + sources."ts-node-9.1.0" + sources."tsconfig-paths-3.9.0" + sources."tslib-1.14.1" + sources."tsutils-3.17.1" + sources."tty-browserify-0.0.0" + sources."type-check-0.3.2" + sources."type-detect-4.0.8" + sources."type-fest-0.8.1" + sources."type-is-1.6.18" + sources."typedarray-0.0.6" + sources."typedarray-to-buffer-3.1.5" + sources."typescript-4.2.3" + sources."union-value-1.0.1" + sources."unique-filename-1.1.1" + sources."unique-slug-2.0.2" + sources."unpipe-1.0.0" + (sources."unset-value-1.0.0" // { + dependencies = [ + (sources."has-value-0.3.1" // { + dependencies = [ + sources."isobject-2.1.0" + ]; + }) + sources."has-values-0.1.4" + ]; + }) + sources."upath-1.2.0" + sources."uri-js-4.4.0" + sources."urix-0.1.0" + (sources."url-0.11.0" // { + dependencies = [ + sources."punycode-1.3.2" + ]; + }) + sources."url-parse-1.5.1" + sources."urlgrey-0.4.4" + sources."use-3.1.1" + (sources."util-0.11.1" // { + dependencies = [ + sources."inherits-2.0.3" + ]; + }) + sources."util-deprecate-1.0.2" + sources."util.promisify-1.0.0" + sources."utila-0.4.0" + sources."utils-merge-1.0.1" + sources."uuid-3.4.0" + sources."v8-compile-cache-2.2.0" + sources."validate-npm-package-license-3.0.4" + sources."vary-1.1.2" + sources."vm-browserify-1.1.2" + sources."w3c-keyname-2.2.4" + sources."watchpack-1.7.5" + (sources."watchpack-chokidar2-2.0.1" // { + dependencies = [ + (sources."anymatch-2.0.0" // { + dependencies = [ + sources."normalize-path-2.1.1" + ]; + }) + sources."binary-extensions-1.13.1" + (sources."braces-2.3.2" // { + dependencies = [ + sources."extend-shallow-2.0.1" + ]; + }) + sources."chokidar-2.1.8" + (sources."fill-range-4.0.0" // { + dependencies = [ + sources."extend-shallow-2.0.1" + ]; + }) + sources."fsevents-1.2.13" + (sources."glob-parent-3.1.0" // { + dependencies = [ + sources."is-glob-3.1.0" + ]; + }) + sources."is-binary-path-1.0.1" + (sources."is-number-3.0.0" // { + dependencies = [ + sources."kind-of-3.2.2" + ]; + }) + sources."micromatch-3.1.10" + sources."readable-stream-2.3.7" + sources."readdirp-2.2.1" + sources."safe-buffer-5.1.2" + sources."string_decoder-1.1.1" + sources."to-regex-range-2.1.1" + ]; + }) + sources."wbuf-1.7.3" + (sources."webpack-4.44.2" // { + dependencies = [ + sources."acorn-6.4.2" + (sources."braces-2.3.2" // { + dependencies = [ + sources."extend-shallow-2.0.1" + ]; + }) 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(sources."wide-align-1.1.3" // { + dependencies = [ + sources."ansi-regex-3.0.0" + sources."is-fullwidth-code-point-2.0.0" + sources."string-width-2.1.1" + sources."strip-ansi-4.0.0" + ]; + }) + sources."word-wrap-1.2.3" + sources."worker-farm-1.7.0" + sources."workerpool-6.0.2" + (sources."wrap-ansi-5.1.0" // { + dependencies = [ + sources."emoji-regex-7.0.3" + sources."is-fullwidth-code-point-2.0.0" + sources."string-width-3.1.0" + ]; + }) + sources."wrappy-1.0.2" + sources."write-1.0.3" + sources."write-file-atomic-3.0.3" + sources."ws-6.2.1" + sources."xtend-4.0.2" + sources."y18n-4.0.1" + sources."yallist-4.0.0" + (sources."yargs-13.3.2" // { + dependencies = [ + sources."emoji-regex-7.0.3" + sources."find-up-3.0.0" + sources."is-fullwidth-code-point-2.0.0" + sources."locate-path-3.0.0" + sources."p-limit-2.3.0" + sources."p-locate-3.0.0" + sources."p-try-2.2.0" + sources."string-width-3.1.0" + ]; + }) + sources."yargs-parser-13.1.2" + (sources."yargs-unparser-2.0.0" // { + 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b/pkgs/servers/monitoring/prometheus/webui/codemirror-promql/package.json new file mode 100644 index 000000000000..1980eba94d58 --- /dev/null +++ b/pkgs/servers/monitoring/prometheus/webui/codemirror-promql/package.json @@ -0,0 +1,93 @@ +{ + "name": "codemirror-promql", + "version": "0.17.0", + "description": "a CodeMirror mode for the PromQL language", + "main": "cjs/index.js", + "module": "esm/index.js", + "scripts": { + "start": "webpack-dev-server --config webpack.config.cjs --open", + "build": "npm run build:grammar && npm run build:lib && npm run build:app", + "build:grammar": "lezer-generator src/lang-promql/grammar/promql.grammar -o src/lang-promql/grammar/parser", + "build:lib": "bash ./build.sh", + "build:app": "webpack --config webpack.config.cjs", + "test": "npm run build:grammar && ts-mocha -p tsconfig.json src/**/*.test.ts", + "test-coverage": "npm run build:grammar && nyc ts-mocha -p ./tsconfig.json ./**/*.test.ts", + "codecov": "nyc report --reporter=text-lcov > coverage.lcov && codecov", + "lint": "eslint src/ --ext .ts", + "lint:fix": "eslint --fix src/ --ext .ts" + }, + "repository": { + "type": "git", + "url": "git+https://github.com/prometheus-community/codemirror-promql.git" + }, + "keywords": [ + "promql", + "codemirror", + "mode", + "prometheus" + ], + "author": "Prometheus Authors <prometheus-developers@googlegroups.com>", + "license": "MIT", + "bugs": { + "url": "https://github.com/prometheus-community/codemirror-promql/issues" + }, + "homepage": "https://github.com/prometheus-community/codemirror-promql/blob/master/README.md", + "dependencies": { + "lru-cache": "^6.0.0" + }, + "devDependencies": { + "@codemirror/autocomplete": "^0.18.3", + "@codemirror/basic-setup": "^0.18.0", + "@codemirror/highlight": "^0.18.3", + "@codemirror/language": "^0.18.0", + "@codemirror/lint": "^0.18.1", + "@codemirror/state": "^0.18.2", + "@codemirror/view": "^0.18.1", + "@types/chai": "^4.2.12", + "@types/lru-cache": "^5.1.0", + "@types/mocha": 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"@codemirror/view": "^0.18.1", + "lezer": "^0.13.0" + }, + "prettier": { + "singleQuote": true, + "trailingComma": "es5", + "printWidth": 150 + }, + "engines": { + "node": ">=12.0.0" + } +} diff --git a/pkgs/servers/monitoring/prometheus/webui/update-web-deps.sh b/pkgs/servers/monitoring/prometheus/webui/update-web-deps.sh new file mode 100755 index 000000000000..328488e81e5a --- /dev/null +++ b/pkgs/servers/monitoring/prometheus/webui/update-web-deps.sh @@ -0,0 +1,32 @@ +#!/usr/bin/env nix-shell +#! nix-shell -i bash -p nodePackages.node2nix +set -euo pipefail + +if [[ "$#" -ne 1 || "$1" == -* ]]; then + echo "Regenerates the npm dependency lock files for the prometheus package." + echo "Usage: $0 <git release tag>" + exit 1 +fi + +update() { + RELEASE_TAG=$1 + GIT_PATH=$2 + OUTPUT_PATH=$3 + NODE_ENV=$4 + + PROM_WEB_SRC="https://raw.githubusercontent.com/prometheus/prometheus/$1" + wget "$PROM_WEB_SRC/$GIT_PATH/package.json" -O package.json + wget "$PROM_WEB_SRC/$GIT_PATH/package-lock.json" -O package-lock.json + + node2nix \ + --lock package-lock.json \ + --development \ + --node-env $NODE_ENV \ + --no-copy-node-env + + mkdir -p $OUTPUT_PATH + mv default.nix node-packages.nix package.json package-lock.json $OUTPUT_PATH +} + +update $1 "web/ui/module/codemirror-promql" "codemirror-promql" ../../../../../development/node-packages/node-env.nix +update $1 "web/ui/react-app" "webui" ../../../../../development/node-packages/node-env.nix diff --git a/pkgs/servers/monitoring/prometheus/webui/webui/default.nix b/pkgs/servers/monitoring/prometheus/webui/webui/default.nix new file mode 100644 index 000000000000..20c7e2568cf0 --- /dev/null +++ b/pkgs/servers/monitoring/prometheus/webui/webui/default.nix @@ -0,0 +1,17 @@ +# This file has been generated by node2nix 1.9.0. Do not edit! + +{pkgs ? import <nixpkgs> { + inherit system; + }, system ? builtins.currentSystem, nodejs ? pkgs."nodejs-12_x"}: + +let + nodeEnv = import ../../../../../development/node-packages/node-env.nix { + inherit (pkgs) stdenv lib python2 runCommand writeTextFile; + inherit pkgs nodejs; + libtool = if pkgs.stdenv.isDarwin then pkgs.darwin.cctools else null; + }; +in +import ./node-packages.nix { + inherit (pkgs) fetchurl nix-gitignore stdenv lib fetchgit; + inherit nodeEnv; +} diff --git a/pkgs/servers/monitoring/prometheus/webui/webui/node-packages.nix b/pkgs/servers/monitoring/prometheus/webui/webui/node-packages.nix new file mode 100644 index 000000000000..ba7dba1c9b7d --- /dev/null +++ b/pkgs/servers/monitoring/prometheus/webui/webui/node-packages.nix @@ -0,0 +1,17600 @@ +# This file has been generated by node2nix 1.9.0. Do not edit! + +{nodeEnv, fetchurl, fetchgit, nix-gitignore, stdenv, lib, globalBuildInputs ? 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+ sources."@babel/plugin-transform-sticky-regex-7.14.5" + sources."@babel/plugin-transform-template-literals-7.14.5" + sources."@babel/plugin-transform-typeof-symbol-7.14.5" + sources."@babel/plugin-transform-typescript-7.15.4" + sources."@babel/plugin-transform-unicode-escapes-7.14.5" + sources."@babel/plugin-transform-unicode-regex-7.14.5" + (sources."@babel/preset-env-7.15.4" // { + dependencies = [ + sources."semver-6.3.0" + ]; + }) + sources."@babel/preset-modules-0.1.4" + sources."@babel/preset-react-7.14.5" + sources."@babel/preset-typescript-7.12.1" + sources."@babel/runtime-7.15.4" + sources."@babel/runtime-corejs3-7.15.4" + sources."@babel/template-7.15.4" + sources."@babel/traverse-7.15.4" + sources."@babel/types-7.15.4" + sources."@bcoe/v8-coverage-0.2.3" + sources."@cnakazawa/watch-1.0.4" + sources."@codemirror/autocomplete-0.18.8" + sources."@codemirror/closebrackets-0.18.0" + sources."@codemirror/commands-0.18.3" + sources."@codemirror/comment-0.18.1" + sources."@codemirror/highlight-0.18.4" + sources."@codemirror/history-0.18.1" + sources."@codemirror/language-0.18.2" + sources."@codemirror/lint-0.18.6" + sources."@codemirror/matchbrackets-0.18.0" + sources."@codemirror/panel-0.18.2" + sources."@codemirror/rangeset-0.18.5" + sources."@codemirror/search-0.18.4" + sources."@codemirror/state-0.18.7" + sources."@codemirror/text-0.18.1" + sources."@codemirror/tooltip-0.18.4" + sources."@codemirror/view-0.18.19" + sources."@csstools/convert-colors-1.4.0" + sources."@csstools/normalize.css-10.1.0" + (sources."@eslint/eslintrc-0.4.3" // { + dependencies = [ + sources."globals-13.11.0" + sources."type-fest-0.20.2" + ]; + }) + sources."@forevolve/bootstrap-dark-1.1.0" + sources."@fortawesome/fontawesome-common-types-0.2.36" + sources."@fortawesome/fontawesome-svg-core-1.2.36" + sources."@fortawesome/free-solid-svg-icons-5.15.4" + sources."@fortawesome/react-fontawesome-0.1.15" + sources."@gar/promisify-1.1.2" + sources."@hapi/address-2.1.4" + sources."@hapi/bourne-1.3.2" + sources."@hapi/hoek-8.5.1" + sources."@hapi/joi-15.1.1" + sources."@hapi/topo-3.1.6" + sources."@humanwhocodes/config-array-0.5.0" + sources."@humanwhocodes/object-schema-1.2.0" + (sources."@istanbuljs/load-nyc-config-1.1.0" // { + dependencies = [ + sources."camelcase-5.3.1" + sources."find-up-4.1.0" + sources."locate-path-5.0.0" + sources."p-limit-2.3.0" + sources."p-locate-4.1.0" + sources."p-try-2.2.0" + sources."path-exists-4.0.0" + sources."resolve-from-5.0.0" + ]; + }) + sources."@istanbuljs/schema-0.1.3" + (sources."@jest/console-26.6.2" // { + dependencies = [ + sources."@jest/types-26.6.2" + sources."@types/yargs-15.0.14" + sources."ansi-styles-4.3.0" + sources."chalk-4.1.2" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + sources."has-flag-4.0.0" + sources."supports-color-7.2.0" + ]; + }) + (sources."@jest/core-26.6.3" // { + dependencies = [ + sources."@jest/types-26.6.2" + sources."@types/yargs-15.0.14" + sources."ansi-styles-4.3.0" + sources."chalk-4.1.2" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + sources."find-up-4.1.0" + sources."has-flag-4.0.0" + sources."jest-config-26.6.3" + sources."jest-get-type-26.3.0" + sources."jest-resolve-26.6.2" + sources."locate-path-5.0.0" + sources."p-limit-2.3.0" + sources."p-locate-4.1.0" + sources."p-try-2.2.0" + sources."path-exists-4.0.0" + sources."pretty-format-26.6.2" + sources."react-is-17.0.2" + (sources."read-pkg-5.2.0" // { + dependencies = [ + sources."type-fest-0.6.0" + ]; + }) + sources."read-pkg-up-7.0.1" + sources."supports-color-7.2.0" + sources."type-fest-0.8.1" + ]; + }) + (sources."@jest/environment-26.6.2" // { + dependencies = [ + sources."@jest/types-26.6.2" + sources."@types/yargs-15.0.14" + sources."ansi-styles-4.3.0" + sources."chalk-4.1.2" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + sources."has-flag-4.0.0" + sources."supports-color-7.2.0" + ]; + }) + (sources."@jest/fake-timers-26.6.2" // { + dependencies = [ + sources."@jest/types-26.6.2" + sources."@types/yargs-15.0.14" + sources."ansi-styles-4.3.0" + sources."chalk-4.1.2" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + sources."has-flag-4.0.0" + sources."supports-color-7.2.0" + ]; + }) + (sources."@jest/globals-26.6.2" // { + dependencies = [ + sources."@jest/types-26.6.2" + sources."@types/yargs-15.0.14" + sources."ansi-styles-4.3.0" + sources."chalk-4.1.2" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + sources."has-flag-4.0.0" + sources."supports-color-7.2.0" + ]; + }) + (sources."@jest/reporters-26.6.2" // { + dependencies = [ + sources."@jest/types-26.6.2" + sources."@types/yargs-15.0.14" + sources."ansi-styles-4.3.0" + sources."chalk-4.1.2" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + sources."find-up-4.1.0" + sources."has-flag-4.0.0" + sources."jest-resolve-26.6.2" + sources."locate-path-5.0.0" + sources."p-limit-2.3.0" + sources."p-locate-4.1.0" + sources."p-try-2.2.0" + sources."path-exists-4.0.0" + (sources."read-pkg-5.2.0" // { + dependencies = [ + sources."type-fest-0.6.0" + ]; + }) + sources."read-pkg-up-7.0.1" + sources."source-map-0.6.1" + sources."supports-color-7.2.0" + sources."type-fest-0.8.1" + ]; + }) + (sources."@jest/source-map-26.6.2" // { + dependencies = [ + sources."source-map-0.6.1" + ]; + }) + (sources."@jest/test-result-26.6.2" // { + dependencies = [ + sources."@jest/types-26.6.2" + sources."@types/yargs-15.0.14" + sources."ansi-styles-4.3.0" + sources."chalk-4.1.2" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + sources."has-flag-4.0.0" + sources."supports-color-7.2.0" + ]; + }) + sources."@jest/test-sequencer-26.6.3" + (sources."@jest/transform-26.6.2" // { + dependencies = [ + sources."@jest/types-26.6.2" + sources."@types/yargs-15.0.14" + sources."ansi-styles-4.3.0" + sources."chalk-4.1.2" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + sources."has-flag-4.0.0" + sources."source-map-0.6.1" + sources."supports-color-7.2.0" + ]; + }) + (sources."@jest/types-27.1.0" // { + dependencies = [ + sources."ansi-styles-4.3.0" + sources."chalk-4.1.2" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + sources."has-flag-4.0.0" + sources."supports-color-7.2.0" + ]; + }) + sources."@nexucis/fuzzy-0.3.0" + sources."@nodelib/fs.scandir-2.1.5" + sources."@nodelib/fs.stat-2.0.5" + sources."@nodelib/fs.walk-1.2.8" + sources."@npmcli/fs-1.0.0" + (sources."@npmcli/move-file-1.1.2" // { + dependencies = [ + sources."mkdirp-1.0.4" + ]; + }) + (sources."@pmmmwh/react-refresh-webpack-plugin-0.4.3" // { + dependencies = [ + sources."source-map-0.7.3" + ]; + }) + sources."@rollup/plugin-node-resolve-7.1.3" + sources."@rollup/plugin-replace-2.4.2" + (sources."@rollup/pluginutils-3.1.0" // { + dependencies = [ + sources."@types/estree-0.0.39" + ]; + }) + sources."@sinonjs/commons-1.8.3" + sources."@sinonjs/fake-timers-6.0.1" + sources."@sinonjs/samsam-5.3.1" + sources."@sinonjs/text-encoding-0.7.1" + sources."@surma/rollup-plugin-off-main-thread-1.4.2" + sources."@svgr/babel-plugin-add-jsx-attribute-5.4.0" + sources."@svgr/babel-plugin-remove-jsx-attribute-5.4.0" + sources."@svgr/babel-plugin-remove-jsx-empty-expression-5.0.1" + sources."@svgr/babel-plugin-replace-jsx-attribute-value-5.0.1" + sources."@svgr/babel-plugin-svg-dynamic-title-5.4.0" + sources."@svgr/babel-plugin-svg-em-dimensions-5.4.0" + sources."@svgr/babel-plugin-transform-react-native-svg-5.4.0" + sources."@svgr/babel-plugin-transform-svg-component-5.5.0" + sources."@svgr/babel-preset-5.5.0" + sources."@svgr/core-5.5.0" + sources."@svgr/hast-util-to-babel-ast-5.5.0" + sources."@svgr/plugin-jsx-5.5.0" + sources."@svgr/plugin-svgo-5.5.0" + sources."@svgr/webpack-5.5.0" + sources."@testing-library/react-hooks-3.7.0" + sources."@tootallnate/once-1.1.2" + sources."@types/babel__core-7.1.16" + sources."@types/babel__generator-7.6.3" + sources."@types/babel__template-7.4.1" + sources."@types/babel__traverse-7.14.2" + sources."@types/cheerio-0.22.30" + sources."@types/enzyme-3.10.9" + sources."@types/enzyme-adapter-react-16-1.0.6" + sources."@types/eslint-7.28.0" + sources."@types/estree-0.0.50" + sources."@types/flot-0.0.32" + sources."@types/glob-7.1.4" + sources."@types/graceful-fs-4.1.5" + sources."@types/history-4.7.9" + sources."@types/html-minifier-terser-5.1.2" + sources."@types/istanbul-lib-coverage-2.0.3" + sources."@types/istanbul-lib-report-3.0.0" + sources."@types/istanbul-reports-3.0.1" + sources."@types/jest-27.0.1" + sources."@types/jquery-3.5.6" + sources."@types/json-schema-7.0.9" + sources."@types/json5-0.0.29" + sources."@types/minimatch-3.0.5" + sources."@types/moment-timezone-0.5.30" + sources."@types/node-12.20.24" + sources."@types/normalize-package-data-2.4.1" + sources."@types/parse-json-4.0.0" + sources."@types/prettier-2.3.2" + sources."@types/prop-types-15.7.4" + sources."@types/q-1.5.5" + sources."@types/react-16.14.15" + sources."@types/react-copy-to-clipboard-5.0.1" + sources."@types/react-dom-16.9.14" + sources."@types/react-resize-detector-5.0.0" + sources."@types/react-router-5.1.16" + sources."@types/react-router-dom-5.1.8" + sources."@types/react-test-renderer-17.0.1" + sources."@types/reactstrap-8.7.2" + sources."@types/resolve-0.0.8" + sources."@types/sanitize-html-1.27.2" + sources."@types/scheduler-0.16.2" + sources."@types/sinon-9.0.11" + sources."@types/sinonjs__fake-timers-6.0.3" + sources."@types/sizzle-2.3.3" + sources."@types/source-list-map-0.1.2" + sources."@types/stack-utils-2.0.1" + sources."@types/tapable-1.0.8" + sources."@types/testing-library__react-hooks-3.4.1" + (sources."@types/uglify-js-3.13.1" // { + dependencies = [ + sources."source-map-0.6.1" + ]; + }) + (sources."@types/webpack-4.41.30" // { + dependencies = [ + sources."source-map-0.6.1" + ]; + }) + (sources."@types/webpack-sources-3.2.0" // { + dependencies = [ + sources."source-map-0.7.3" + ]; + }) + sources."@types/yargs-16.0.4" + sources."@types/yargs-parser-20.2.1" + sources."@typescript-eslint/eslint-plugin-4.31.0" + sources."@typescript-eslint/experimental-utils-4.31.0" + sources."@typescript-eslint/parser-4.31.0" + sources."@typescript-eslint/scope-manager-4.31.0" + sources."@typescript-eslint/types-4.31.0" + sources."@typescript-eslint/typescript-estree-4.31.0" + sources."@typescript-eslint/visitor-keys-4.31.0" + sources."@webassemblyjs/ast-1.9.0" + sources."@webassemblyjs/floating-point-hex-parser-1.9.0" + sources."@webassemblyjs/helper-api-error-1.9.0" + sources."@webassemblyjs/helper-buffer-1.9.0" + sources."@webassemblyjs/helper-code-frame-1.9.0" + sources."@webassemblyjs/helper-fsm-1.9.0" + sources."@webassemblyjs/helper-module-context-1.9.0" + sources."@webassemblyjs/helper-wasm-bytecode-1.9.0" + sources."@webassemblyjs/helper-wasm-section-1.9.0" + sources."@webassemblyjs/ieee754-1.9.0" + sources."@webassemblyjs/leb128-1.9.0" + sources."@webassemblyjs/utf8-1.9.0" + sources."@webassemblyjs/wasm-edit-1.9.0" + sources."@webassemblyjs/wasm-gen-1.9.0" + sources."@webassemblyjs/wasm-opt-1.9.0" + sources."@webassemblyjs/wasm-parser-1.9.0" + sources."@webassemblyjs/wast-parser-1.9.0" + sources."@webassemblyjs/wast-printer-1.9.0" + sources."@xtuc/ieee754-1.2.0" + sources."@xtuc/long-4.2.2" + sources."abab-2.0.5" + sources."accepts-1.3.7" + sources."acorn-7.4.1" + sources."acorn-globals-6.0.0" + sources."acorn-jsx-5.3.2" + sources."acorn-walk-7.2.0" + sources."address-1.1.2" + sources."adjust-sourcemap-loader-3.0.0" + sources."agent-base-6.0.2" + sources."aggregate-error-3.1.0" + sources."airbnb-prop-types-2.16.0" + sources."ajv-6.12.6" + sources."ajv-errors-1.0.1" + sources."ajv-keywords-3.5.2" + sources."alphanum-sort-1.0.2" + sources."ansi-colors-4.1.1" + sources."ansi-escapes-4.3.2" + sources."ansi-html-0.0.7" + sources."ansi-regex-5.0.0" + sources."ansi-styles-3.2.1" + sources."anymatch-3.1.2" + sources."aproba-1.2.0" + sources."argparse-1.0.10" + sources."aria-query-4.2.2" + sources."arity-n-1.0.4" + sources."arr-diff-4.0.0" + sources."arr-flatten-1.1.0" + sources."arr-union-3.1.0" + sources."array-flatten-2.1.2" + sources."array-includes-3.1.3" + sources."array-union-2.1.0" + sources."array-uniq-1.0.3" + sources."array-unique-0.3.2" + sources."array.prototype.filter-1.0.0" + sources."array.prototype.find-2.1.1" + sources."array.prototype.flat-1.2.4" + sources."array.prototype.flatmap-1.2.4" + sources."arrify-2.0.1" + sources."asap-2.0.6" + (sources."asn1.js-5.4.1" // { + dependencies = [ + sources."bn.js-4.12.0" + ]; + }) + (sources."assert-1.5.0" // { + dependencies = [ + sources."inherits-2.0.1" + sources."util-0.10.3" + ]; + }) + sources."assign-symbols-1.0.0" + sources."ast-types-flow-0.0.7" + sources."astral-regex-2.0.0" + sources."async-2.6.3" + sources."async-each-1.0.3" + sources."async-limiter-1.0.1" + sources."asynckit-0.4.0" + sources."at-least-node-1.0.0" + sources."atob-2.1.2" + sources."autoprefixer-9.8.6" + sources."axe-core-4.3.3" + sources."axobject-query-2.2.0" + (sources."babel-eslint-10.1.0" // { + dependencies = [ + sources."eslint-visitor-keys-1.3.0" + ]; + }) + sources."babel-extract-comments-1.0.0" + (sources."babel-jest-26.6.3" // { + dependencies = [ + sources."@jest/types-26.6.2" + sources."@types/yargs-15.0.14" + sources."ansi-styles-4.3.0" + sources."chalk-4.1.2" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + sources."has-flag-4.0.0" + sources."supports-color-7.2.0" + ]; + }) + (sources."babel-loader-8.1.0" // { + dependencies = [ + sources."json5-1.0.1" + sources."loader-utils-1.4.0" + ]; + }) + sources."babel-plugin-dynamic-import-node-2.3.3" + sources."babel-plugin-istanbul-6.0.0" + sources."babel-plugin-jest-hoist-26.6.2" + (sources."babel-plugin-macros-2.8.0" // { + dependencies = [ + sources."cosmiconfig-6.0.0" + ]; + }) + sources."babel-plugin-named-asset-import-0.3.7" + (sources."babel-plugin-polyfill-corejs2-0.2.2" // { + dependencies = [ + sources."semver-6.3.0" + ]; + }) + sources."babel-plugin-polyfill-corejs3-0.2.4" + sources."babel-plugin-polyfill-regenerator-0.2.2" + sources."babel-plugin-syntax-object-rest-spread-6.13.0" + sources."babel-plugin-transform-object-rest-spread-6.26.0" + sources."babel-plugin-transform-react-remove-prop-types-0.4.24" + sources."babel-preset-current-node-syntax-1.0.1" + sources."babel-preset-jest-26.6.2" + (sources."babel-preset-react-app-10.0.0" // { + dependencies = [ + sources."@babel/core-7.12.3" + sources."@babel/plugin-proposal-class-properties-7.12.1" + sources."@babel/plugin-proposal-nullish-coalescing-operator-7.12.1" + sources."@babel/plugin-proposal-numeric-separator-7.12.1" + sources."@babel/plugin-proposal-optional-chaining-7.12.1" + sources."@babel/plugin-transform-react-display-name-7.12.1" + sources."@babel/preset-env-7.12.1" + (sources."@babel/preset-react-7.12.1" // { + dependencies = [ + sources."@babel/plugin-transform-react-jsx-self-7.14.9" + sources."@babel/plugin-transform-react-jsx-source-7.14.5" + ]; + }) + sources."@babel/runtime-7.12.1" + sources."semver-5.7.1" + ]; + }) + (sources."babel-runtime-6.26.0" // { + dependencies = [ + sources."core-js-2.6.12" + sources."regenerator-runtime-0.11.1" + ]; + }) + sources."babylon-6.18.0" + sources."balanced-match-1.0.2" + (sources."base-0.11.2" // { + dependencies = [ + sources."define-property-1.0.0" + ]; + }) + sources."base64-js-1.5.1" + sources."batch-0.6.1" + sources."bfj-7.0.2" + sources."big.js-5.2.2" + sources."binary-extensions-2.2.0" + sources."bindings-1.5.0" + sources."bluebird-3.7.2" + sources."bn.js-5.2.0" + (sources."body-parser-1.19.0" // { + dependencies = [ + sources."bytes-3.1.0" + sources."debug-2.6.9" + sources."ms-2.0.0" + ]; + }) + sources."bonjour-3.5.0" + sources."boolbase-1.0.0" + sources."bootstrap-4.6.0" + sources."brace-expansion-1.1.11" + sources."braces-3.0.2" + sources."brorand-1.1.0" + sources."browser-process-hrtime-1.0.0" + sources."browserify-aes-1.2.0" + sources."browserify-cipher-1.0.1" + sources."browserify-des-1.0.2" + sources."browserify-rsa-4.1.0" + (sources."browserify-sign-4.2.1" // { + dependencies = [ + sources."readable-stream-3.6.0" + sources."safe-buffer-5.2.1" + ]; + }) + sources."browserify-zlib-0.2.0" + sources."browserslist-4.17.0" + sources."bser-2.1.1" + (sources."buffer-4.9.2" // { + dependencies = [ + sources."isarray-1.0.0" + ]; + }) + sources."buffer-from-1.1.2" + sources."buffer-indexof-1.1.1" + sources."buffer-xor-1.0.3" + sources."builtin-modules-3.2.0" + sources."builtin-status-codes-3.0.0" + sources."bytes-3.0.0" + (sources."cacache-15.3.0" // { + dependencies = [ + sources."mkdirp-1.0.4" + ]; + }) + sources."cache-base-1.0.1" + sources."call-bind-1.0.2" + (sources."caller-callsite-2.0.0" // { + dependencies = [ + sources."callsites-2.0.0" + ]; + }) + sources."caller-path-2.0.0" + sources."callsites-3.1.0" + sources."camel-case-4.1.2" + sources."camelcase-6.2.0" + sources."caniuse-api-3.0.0" + sources."caniuse-lite-1.0.30001255" + sources."capture-exit-2.0.0" + sources."case-sensitive-paths-webpack-plugin-2.3.0" + sources."chalk-2.4.2" + sources."char-regex-1.0.2" + sources."check-types-11.1.2" + (sources."cheerio-1.0.0-rc.10" // { + dependencies = [ + sources."htmlparser2-6.1.0" + ]; + }) + sources."cheerio-select-1.5.0" + sources."chokidar-3.5.2" + sources."chownr-2.0.0" + sources."chrome-trace-event-1.0.3" + sources."ci-info-2.0.0" + sources."cipher-base-1.0.4" + sources."cjs-module-lexer-0.6.0" + (sources."class-utils-0.3.6" // { + dependencies = [ + sources."define-property-0.2.5" + (sources."is-accessor-descriptor-0.1.6" // { + dependencies = [ + sources."kind-of-3.2.2" + ]; + }) + (sources."is-data-descriptor-0.1.4" // { + dependencies = [ + sources."kind-of-3.2.2" + ]; + }) + sources."is-descriptor-0.1.6" + sources."kind-of-5.1.0" + ]; + }) + sources."classnames-2.3.1" + (sources."clean-css-4.2.3" // { + dependencies = [ + sources."source-map-0.6.1" + ]; + }) + sources."clean-stack-2.2.0" + sources."cliui-6.0.0" + sources."co-4.6.0" + sources."coa-2.0.2" + sources."codemirror-promql-0.17.0" + sources."collect-v8-coverage-1.0.1" + sources."collection-visit-1.0.0" + sources."color-3.2.1" + sources."color-convert-1.9.3" + sources."color-name-1.1.3" + sources."color-string-1.6.0" + sources."colorette-1.3.0" + sources."combined-stream-1.0.8" + sources."commander-4.1.1" + sources."common-tags-1.8.0" + sources."commondir-1.0.1" + sources."component-emitter-1.3.0" + sources."compose-function-3.0.3" + sources."compressible-2.0.18" + (sources."compression-1.7.4" // { + dependencies = [ + sources."debug-2.6.9" + sources."ms-2.0.0" + ]; + }) + sources."compute-scroll-into-view-1.0.17" + sources."concat-map-0.0.1" + sources."concat-stream-1.6.2" + sources."confusing-browser-globals-1.0.10" + sources."connect-history-api-fallback-1.6.0" + sources."console-browserify-1.2.0" + sources."constants-browserify-1.0.0" + sources."content-disposition-0.5.3" + sources."content-type-1.0.4" + sources."convert-source-map-1.8.0" + sources."cookie-0.4.0" + sources."cookie-signature-1.0.6" + (sources."copy-concurrently-1.0.5" // { + dependencies = [ + sources."rimraf-2.7.1" + ]; + }) + sources."copy-descriptor-0.1.1" + sources."copy-to-clipboard-3.3.1" + sources."core-js-3.17.2" + (sources."core-js-compat-3.17.2" // { + dependencies = [ + sources."semver-7.0.0" + ]; + }) + sources."core-js-pure-3.17.2" + sources."core-util-is-1.0.3" + sources."cosmiconfig-7.0.1" + (sources."create-ecdh-4.0.4" // { + dependencies = [ + sources."bn.js-4.12.0" + ]; + }) + sources."create-hash-1.2.0" + sources."create-hmac-1.1.7" + sources."crelt-1.0.5" + sources."cross-fetch-3.1.4" + sources."cross-spawn-7.0.3" + sources."crypto-browserify-3.12.0" + sources."crypto-random-string-1.0.0" + (sources."css-2.2.4" // { + dependencies = [ + sources."source-map-0.6.1" + ]; + }) + sources."css-blank-pseudo-0.1.4" + sources."css-color-names-0.0.4" + sources."css-declaration-sorter-4.0.1" + (sources."css-has-pseudo-0.10.0" // { + dependencies = [ + sources."cssesc-2.0.0" + sources."postcss-selector-parser-5.0.0" + ]; + }) + sources."css-loader-4.3.0" + sources."css-prefers-color-scheme-3.1.1" + sources."css-select-4.1.3" + sources."css-select-base-adapter-0.1.1" + (sources."css-tree-1.0.0-alpha.37" // { + dependencies = [ + sources."source-map-0.6.1" + ]; + }) + sources."css-what-5.0.1" + sources."css.escape-1.5.1" + sources."cssdb-4.4.0" + sources."cssesc-3.0.0" + (sources."cssnano-4.1.11" // { + dependencies = [ + sources."cosmiconfig-5.2.1" + sources."import-fresh-2.0.0" + sources."parse-json-4.0.0" + sources."resolve-from-3.0.0" + ]; + }) + sources."cssnano-preset-default-4.0.8" + sources."cssnano-util-get-arguments-4.0.0" + sources."cssnano-util-get-match-4.0.0" + sources."cssnano-util-raw-cache-4.0.1" + sources."cssnano-util-same-parent-4.0.1" + (sources."csso-4.2.0" // { + dependencies = [ + sources."css-tree-1.1.3" + sources."mdn-data-2.0.14" + sources."source-map-0.6.1" + ]; + }) + sources."cssom-0.4.4" + (sources."cssstyle-2.3.0" // { + dependencies = [ + sources."cssom-0.3.8" + ]; + }) + sources."csstype-3.0.8" + sources."cyclist-1.0.1" + sources."d-1.0.1" + sources."damerau-levenshtein-1.0.7" + sources."data-urls-2.0.0" + sources."debug-4.3.2" + sources."decamelize-1.2.0" + sources."decimal.js-10.3.1" + sources."decode-uri-component-0.2.0" + sources."dedent-0.7.0" + sources."deep-equal-1.1.1" + sources."deep-is-0.1.4" + sources."deepmerge-4.2.2" + (sources."default-gateway-4.2.0" // { + dependencies = [ + sources."cross-spawn-6.0.5" + sources."execa-1.0.0" + sources."get-stream-4.1.0" + sources."is-stream-1.1.0" + sources."npm-run-path-2.0.2" + sources."path-key-2.0.1" + sources."semver-5.7.1" + sources."shebang-command-1.2.0" + sources."shebang-regex-1.0.0" + sources."which-1.3.1" + ]; + }) + sources."define-properties-1.1.3" + sources."define-property-2.0.2" + (sources."del-4.1.1" // { + dependencies = [ + sources."array-union-1.0.2" + (sources."globby-6.1.0" // { + dependencies = [ + sources."pify-2.3.0" + ]; + }) + sources."p-map-2.1.0" + sources."rimraf-2.7.1" + ]; + }) + sources."delayed-stream-1.0.0" + sources."depd-1.1.2" + sources."des.js-1.0.1" + sources."destroy-1.0.4" + sources."detect-newline-3.1.0" + sources."detect-node-2.1.0" + (sources."detect-port-alt-1.1.6" // { + dependencies = [ + sources."debug-2.6.9" + sources."ms-2.0.0" + ]; + }) + sources."diff-4.0.2" + sources."diff-sequences-27.0.6" + (sources."diffie-hellman-5.0.3" // { + dependencies = [ + sources."bn.js-4.12.0" + ]; + }) + sources."dir-glob-3.0.1" + sources."discontinuous-range-1.0.0" + sources."dns-equal-1.0.0" + sources."dns-packet-1.3.4" + sources."dns-txt-2.0.2" + sources."doctrine-3.0.0" + sources."dom-converter-0.2.0" + sources."dom-helpers-3.4.0" + sources."dom-serializer-1.3.2" + sources."domain-browser-1.2.0" + sources."domelementtype-2.2.0" + (sources."domexception-2.0.1" // { + dependencies = [ + sources."webidl-conversions-5.0.0" + ]; + }) + sources."domhandler-4.2.2" + sources."domutils-2.8.0" + sources."dot-case-3.0.4" + (sources."dot-prop-5.3.0" // { + dependencies = [ + sources."is-obj-2.0.0" + ]; + }) + sources."dotenv-8.2.0" + sources."dotenv-expand-5.1.0" + sources."downshift-3.4.8" + sources."duplexer-0.1.2" + sources."duplexify-3.7.1" + sources."ee-first-1.1.1" + sources."ejs-2.7.4" + sources."electron-to-chromium-1.3.830" + (sources."elliptic-6.5.4" // { + dependencies = [ + sources."bn.js-4.12.0" + ]; + }) + sources."emittery-0.7.2" + sources."emoji-regex-9.2.2" + sources."emojis-list-3.0.0" + sources."encodeurl-1.0.2" + sources."end-of-stream-1.4.4" + (sources."enhanced-resolve-4.5.0" // { + dependencies = [ + sources."memory-fs-0.5.0" + ]; + }) + sources."enquirer-2.3.6" + sources."entities-2.2.0" + sources."enzyme-3.11.0" + (sources."enzyme-adapter-react-16-1.15.6" // { + dependencies = [ + sources."semver-5.7.1" + ]; + }) + (sources."enzyme-adapter-utils-1.14.0" // { + dependencies = [ + sources."semver-5.7.1" + ]; + }) + sources."enzyme-shallow-equal-1.0.4" + sources."enzyme-to-json-3.6.2" + sources."errno-0.1.8" + sources."error-ex-1.3.2" + sources."error-stack-parser-2.0.6" + sources."es-abstract-1.18.5" + sources."es-array-method-boxes-properly-1.0.0" + sources."es-to-primitive-1.2.1" + sources."es5-ext-0.10.53" + sources."es6-iterator-2.0.3" + sources."es6-symbol-3.1.3" + sources."escalade-3.1.1" + sources."escape-html-1.0.3" + sources."escape-string-regexp-1.0.5" + (sources."escodegen-2.0.0" // { + dependencies = [ + sources."levn-0.3.0" + sources."optionator-0.8.3" + sources."prelude-ls-1.1.2" + sources."source-map-0.6.1" + sources."type-check-0.3.2" + ]; + }) + (sources."eslint-7.32.0" // { + dependencies = [ + sources."@babel/code-frame-7.12.11" + sources."ansi-styles-4.3.0" + sources."chalk-4.1.2" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + sources."escape-string-regexp-4.0.0" + (sources."eslint-utils-2.1.0" // { + dependencies = [ + sources."eslint-visitor-keys-1.3.0" + ]; + }) + sources."globals-13.11.0" + sources."has-flag-4.0.0" + sources."supports-color-7.2.0" + sources."type-fest-0.20.2" + ]; + }) + sources."eslint-config-prettier-8.3.0" + sources."eslint-config-react-app-6.0.0" + (sources."eslint-import-resolver-node-0.3.6" // { + dependencies = [ + sources."debug-3.2.7" + ]; + }) + (sources."eslint-module-utils-2.6.2" // { + dependencies = [ + sources."debug-3.2.7" + ]; + }) + sources."eslint-plugin-flowtype-5.9.2" + (sources."eslint-plugin-import-2.24.2" // { + dependencies = [ + sources."debug-2.6.9" + sources."doctrine-2.1.0" + sources."ms-2.0.0" + ]; + }) + sources."eslint-plugin-jest-24.4.0" + sources."eslint-plugin-jsx-a11y-6.4.1" + sources."eslint-plugin-prettier-4.0.0" + (sources."eslint-plugin-react-7.25.1" // { + dependencies = [ + sources."doctrine-2.1.0" + sources."resolve-2.0.0-next.3" + ]; + }) + sources."eslint-plugin-react-hooks-4.2.0" + (sources."eslint-plugin-testing-library-3.10.2" // { + dependencies = [ + sources."@typescript-eslint/experimental-utils-3.10.1" + sources."@typescript-eslint/types-3.10.1" + sources."@typescript-eslint/typescript-estree-3.10.1" + sources."@typescript-eslint/visitor-keys-3.10.1" + sources."eslint-utils-2.1.0" + sources."eslint-visitor-keys-1.3.0" + ]; + }) + (sources."eslint-scope-5.1.1" // { + dependencies = [ + sources."estraverse-4.3.0" + ]; + }) + sources."eslint-utils-3.0.0" + sources."eslint-visitor-keys-2.1.0" + (sources."eslint-webpack-plugin-2.5.4" // { + dependencies = [ + sources."schema-utils-3.1.1" + ]; + }) + (sources."espree-7.3.1" // { + dependencies = [ + sources."eslint-visitor-keys-1.3.0" + ]; + }) + sources."esprima-4.0.1" + sources."esquery-1.4.0" + sources."esrecurse-4.3.0" + sources."estraverse-5.2.0" + sources."estree-walker-1.0.1" + sources."esutils-2.0.3" + sources."etag-1.8.1" + sources."eventemitter3-4.0.7" + sources."events-3.3.0" + sources."eventsource-1.1.0" + sources."evp_bytestokey-1.0.3" + sources."exec-sh-0.3.6" + sources."execa-4.1.0" + sources."exit-0.1.2" + (sources."expand-brackets-2.1.4" // { + dependencies = [ + sources."debug-2.6.9" + sources."define-property-0.2.5" + sources."extend-shallow-2.0.1" + (sources."is-accessor-descriptor-0.1.6" // { + dependencies = [ + sources."kind-of-3.2.2" + ]; + }) + (sources."is-data-descriptor-0.1.4" // { + dependencies = [ + sources."kind-of-3.2.2" + ]; + }) + sources."is-descriptor-0.1.6" + sources."is-extendable-0.1.1" + sources."kind-of-5.1.0" + sources."ms-2.0.0" + ]; + }) + (sources."expect-26.6.2" // { + dependencies = [ + sources."@jest/types-26.6.2" + sources."@types/yargs-15.0.14" + sources."ansi-styles-4.3.0" + sources."chalk-4.1.2" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + sources."has-flag-4.0.0" + sources."jest-get-type-26.3.0" + sources."supports-color-7.2.0" + ]; + }) + (sources."express-4.17.1" // { + dependencies = [ + sources."array-flatten-1.1.1" + sources."debug-2.6.9" + sources."ms-2.0.0" + sources."path-to-regexp-0.1.7" + ]; + }) + (sources."ext-1.5.0" // { + dependencies = [ + sources."type-2.5.0" + ]; + }) + sources."extend-shallow-3.0.2" + (sources."extglob-2.0.4" // { + dependencies = [ + sources."define-property-1.0.0" + sources."extend-shallow-2.0.1" + sources."is-extendable-0.1.1" + ]; + }) + sources."fast-deep-equal-3.1.3" + sources."fast-diff-1.2.0" + sources."fast-glob-3.2.7" + sources."fast-json-stable-stringify-2.1.0" + sources."fast-levenshtein-2.0.6" + sources."fastq-1.12.0" + sources."faye-websocket-0.11.4" + sources."fb-watchman-2.0.1" + sources."figgy-pudding-3.5.2" + sources."file-entry-cache-6.0.1" + (sources."file-loader-6.1.1" // { + dependencies = [ + sources."schema-utils-3.1.1" + ]; + }) + sources."file-uri-to-path-1.0.0" + sources."filesize-6.1.0" + sources."fill-range-7.0.1" + (sources."finalhandler-1.1.2" // { + dependencies = [ + sources."debug-2.6.9" + sources."ms-2.0.0" + ]; + }) + (sources."find-cache-dir-2.1.0" // { + dependencies = [ + sources."find-up-3.0.0" + sources."locate-path-3.0.0" + sources."p-limit-2.3.0" + sources."p-locate-3.0.0" + sources."p-try-2.2.0" + sources."pkg-dir-3.0.0" + ]; + }) + sources."find-up-2.1.0" + sources."flat-cache-3.0.4" + sources."flatted-3.2.2" + sources."flatten-1.0.3" + sources."flush-write-stream-1.1.1" + sources."follow-redirects-1.14.3" + sources."for-in-1.0.2" + (sources."fork-ts-checker-webpack-plugin-4.1.6" // { + dependencies = [ + (sources."braces-2.3.2" // { + dependencies = [ + sources."extend-shallow-2.0.1" + ]; + }) + (sources."fill-range-4.0.0" // { + dependencies = [ + sources."extend-shallow-2.0.1" + ]; + }) + sources."is-extendable-0.1.1" + (sources."is-number-3.0.0" // { + dependencies = [ + sources."kind-of-3.2.2" + ]; + }) + sources."micromatch-3.1.10" + sources."semver-5.7.1" + sources."to-regex-range-2.1.1" + ]; + }) + sources."form-data-3.0.1" + sources."forwarded-0.2.0" + sources."fragment-cache-0.2.1" + sources."fresh-0.5.2" + sources."from2-2.3.0" + sources."fs-extra-9.1.0" + sources."fs-minipass-2.1.0" + sources."fs-write-stream-atomic-1.0.10" + sources."fs.realpath-1.0.0" + sources."fsevents-2.3.2" + sources."function-bind-1.1.1" + sources."function.prototype.name-1.1.4" + sources."functional-red-black-tree-1.0.1" + sources."functions-have-names-1.2.2" + sources."gensync-1.0.0-beta.2" + sources."get-caller-file-2.0.5" + sources."get-intrinsic-1.1.1" + sources."get-own-enumerable-property-symbols-3.0.2" + sources."get-package-type-0.1.0" + sources."get-stream-5.2.0" + sources."get-value-2.0.6" + sources."glob-7.1.7" + sources."glob-parent-5.1.2" + sources."global-modules-2.0.0" + (sources."global-prefix-3.0.0" // { + dependencies = [ + sources."which-1.3.1" + ]; + }) + sources."globals-11.12.0" + (sources."globby-11.0.4" // { + dependencies = [ + sources."ignore-5.1.8" + ]; + }) + sources."graceful-fs-4.2.8" + sources."growly-1.3.0" + sources."gud-1.0.0" + sources."gzip-size-5.1.1" + sources."handle-thing-2.0.1" + sources."harmony-reflect-1.6.2" + sources."has-1.0.3" + sources."has-bigints-1.0.1" + sources."has-flag-3.0.0" + sources."has-symbols-1.0.2" + sources."has-tostringtag-1.0.0" + sources."has-value-1.0.0" + (sources."has-values-1.0.0" // { + dependencies = [ + (sources."is-number-3.0.0" // { + dependencies = [ + sources."kind-of-3.2.2" + ]; + }) + sources."kind-of-4.0.0" + ]; + }) + (sources."hash-base-3.1.0" // { + dependencies = [ + sources."readable-stream-3.6.0" + sources."safe-buffer-5.2.1" + ]; + }) + sources."hash.js-1.1.7" + sources."he-1.2.0" + sources."hex-color-regex-1.1.0" + sources."history-4.10.1" + sources."hmac-drbg-1.0.1" + sources."hoist-non-react-statics-3.3.2" + sources."hoopy-0.1.4" + sources."hosted-git-info-2.8.9" + sources."hpack.js-2.1.6" + sources."hsl-regex-1.0.0" + sources."hsla-regex-1.0.0" + sources."html-element-map-1.3.1" + sources."html-encoding-sniffer-2.0.1" + sources."html-entities-1.4.0" + sources."html-escaper-2.0.2" + sources."html-minifier-terser-5.1.1" + (sources."html-webpack-plugin-4.5.0" // { + dependencies = [ + sources."json5-1.0.1" + sources."loader-utils-1.4.0" + ]; + }) + (sources."htmlparser2-4.1.0" // { + dependencies = [ + sources."domhandler-3.3.0" + ]; + }) + sources."http-deceiver-1.2.7" + (sources."http-errors-1.7.2" // { + dependencies = [ + sources."inherits-2.0.3" + ]; + }) + sources."http-parser-js-0.5.3" + sources."http-proxy-1.18.1" + sources."http-proxy-agent-4.0.1" + (sources."http-proxy-middleware-0.19.1" // { + dependencies = [ + (sources."braces-2.3.2" // { + dependencies = [ + sources."extend-shallow-2.0.1" + ]; + }) + (sources."fill-range-4.0.0" // { + dependencies = [ + sources."extend-shallow-2.0.1" + ]; + }) + sources."is-extendable-0.1.1" + (sources."is-number-3.0.0" // { + dependencies = [ + sources."kind-of-3.2.2" + ]; + }) + sources."micromatch-3.1.10" + sources."to-regex-range-2.1.1" + ]; + }) + sources."https-browserify-1.0.0" + sources."https-proxy-agent-5.0.0" + sources."human-signals-1.1.1" + sources."i-0.3.6" + sources."iconv-lite-0.4.24" + sources."icss-utils-4.1.1" + sources."identity-obj-proxy-3.0.0" + sources."ieee754-1.2.1" + sources."iferr-0.1.5" + sources."ignore-4.0.6" + sources."immer-8.0.1" + sources."import-cwd-2.1.0" + sources."import-fresh-3.3.0" + (sources."import-from-2.1.0" // { + dependencies = [ + sources."resolve-from-3.0.0" + ]; + }) + (sources."import-local-3.0.2" // { + dependencies = [ + sources."find-up-4.1.0" + sources."locate-path-5.0.0" + sources."p-limit-2.3.0" + sources."p-locate-4.1.0" + sources."p-try-2.2.0" + sources."path-exists-4.0.0" + sources."pkg-dir-4.2.0" + ]; + }) + sources."imurmurhash-0.1.4" + sources."indent-string-4.0.0" + sources."indexes-of-1.0.1" + sources."infer-owner-1.0.4" + sources."inflight-1.0.6" + sources."inherits-2.0.4" + sources."ini-1.3.8" + sources."internal-ip-4.3.0" + sources."internal-slot-1.0.3" + sources."ip-1.1.5" + sources."ip-regex-2.1.0" + sources."ipaddr.js-1.9.1" + sources."is-absolute-url-2.1.0" + sources."is-accessor-descriptor-1.0.0" + sources."is-arguments-1.1.1" + sources."is-arrayish-0.2.1" + sources."is-bigint-1.0.4" + sources."is-binary-path-2.1.0" + sources."is-boolean-object-1.1.2" + sources."is-buffer-1.1.6" + sources."is-callable-1.2.4" + sources."is-ci-2.0.0" + sources."is-color-stop-1.1.0" + sources."is-core-module-2.6.0" + sources."is-data-descriptor-1.0.0" + sources."is-date-object-1.0.5" + sources."is-descriptor-1.0.2" + sources."is-directory-0.3.1" + sources."is-docker-2.2.1" + (sources."is-extendable-1.0.1" // { + dependencies = [ + sources."is-plain-object-2.0.4" + ]; + }) + sources."is-extglob-2.1.1" + sources."is-fullwidth-code-point-3.0.0" + sources."is-generator-fn-2.1.0" + sources."is-glob-4.0.1" + sources."is-module-1.0.0" + sources."is-negative-zero-2.0.1" + sources."is-number-7.0.0" + sources."is-number-object-1.0.6" + sources."is-obj-1.0.1" + sources."is-path-cwd-2.2.0" + sources."is-path-in-cwd-2.1.0" + sources."is-path-inside-2.1.0" + sources."is-plain-obj-1.1.0" + sources."is-plain-object-5.0.0" + sources."is-potential-custom-element-name-1.0.1" + sources."is-regex-1.1.4" + sources."is-regexp-1.0.0" + sources."is-resolvable-1.1.0" + sources."is-root-2.1.0" + sources."is-stream-2.0.1" + sources."is-string-1.0.7" + sources."is-subset-0.1.1" + sources."is-symbol-1.0.4" + sources."is-typedarray-1.0.0" + sources."is-windows-1.0.2" + sources."is-wsl-2.2.0" + sources."isarray-0.0.1" + sources."isexe-2.0.0" + sources."isobject-3.0.1" + sources."istanbul-lib-coverage-3.0.0" + (sources."istanbul-lib-instrument-4.0.3" // { + dependencies = [ + sources."semver-6.3.0" + ]; + }) + (sources."istanbul-lib-report-3.0.0" // { + dependencies = [ + sources."has-flag-4.0.0" + sources."make-dir-3.1.0" + sources."semver-6.3.0" + sources."supports-color-7.2.0" + ]; + }) + (sources."istanbul-lib-source-maps-4.0.0" // { + dependencies = [ + sources."source-map-0.6.1" + ]; + }) + sources."istanbul-reports-3.0.2" + sources."jest-26.6.0" + (sources."jest-changed-files-26.6.2" // { + dependencies = [ + sources."@jest/types-26.6.2" + sources."@types/yargs-15.0.14" + sources."ansi-styles-4.3.0" + sources."chalk-4.1.2" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + sources."has-flag-4.0.0" + sources."supports-color-7.2.0" + ]; + }) + (sources."jest-circus-26.6.0" // { + dependencies = [ + sources."@jest/types-26.6.2" + sources."@types/yargs-15.0.14" + sources."ansi-styles-4.3.0" + sources."chalk-4.1.2" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + sources."has-flag-4.0.0" + sources."pretty-format-26.6.2" + sources."react-is-17.0.2" + sources."supports-color-7.2.0" + ]; + }) + (sources."jest-cli-26.6.3" // { + dependencies = [ + sources."@jest/types-26.6.2" + sources."@types/yargs-15.0.14" + sources."ansi-styles-4.3.0" + sources."chalk-4.1.2" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + sources."find-up-4.1.0" + sources."has-flag-4.0.0" + sources."jest-config-26.6.3" + sources."jest-get-type-26.3.0" + sources."jest-resolve-26.6.2" + sources."locate-path-5.0.0" + sources."p-limit-2.3.0" + sources."p-locate-4.1.0" + sources."p-try-2.2.0" + sources."path-exists-4.0.0" + sources."pretty-format-26.6.2" + sources."react-is-17.0.2" + (sources."read-pkg-5.2.0" // { + dependencies = [ + sources."type-fest-0.6.0" + ]; + }) + sources."read-pkg-up-7.0.1" + sources."supports-color-7.2.0" + sources."type-fest-0.8.1" + ]; + }) + (sources."jest-diff-27.1.0" // { + dependencies = [ + sources."ansi-styles-4.3.0" + sources."chalk-4.1.2" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + sources."has-flag-4.0.0" + sources."supports-color-7.2.0" + ]; + }) + sources."jest-docblock-26.0.0" + (sources."jest-each-26.6.2" // { + dependencies = [ + sources."@jest/types-26.6.2" + sources."@types/yargs-15.0.14" + sources."ansi-styles-4.3.0" + sources."chalk-4.1.2" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + sources."has-flag-4.0.0" + sources."jest-get-type-26.3.0" + sources."pretty-format-26.6.2" + sources."react-is-17.0.2" + sources."supports-color-7.2.0" + ]; + }) + (sources."jest-environment-jsdom-26.6.2" // { + dependencies = [ + sources."@jest/types-26.6.2" + sources."@types/yargs-15.0.14" + sources."ansi-styles-4.3.0" + sources."chalk-4.1.2" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + sources."has-flag-4.0.0" + sources."supports-color-7.2.0" + ]; + }) + (sources."jest-environment-node-26.6.2" // { + dependencies = [ + sources."@jest/types-26.6.2" + sources."@types/yargs-15.0.14" + sources."ansi-styles-4.3.0" + sources."chalk-4.1.2" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + sources."has-flag-4.0.0" + sources."supports-color-7.2.0" + ]; + }) + sources."jest-fetch-mock-3.0.3" + sources."jest-get-type-27.0.6" + (sources."jest-haste-map-26.6.2" // { + dependencies = [ + sources."@jest/types-26.6.2" + sources."@types/yargs-15.0.14" + sources."ansi-styles-4.3.0" + sources."chalk-4.1.2" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + sources."has-flag-4.0.0" + sources."supports-color-7.2.0" + ]; + }) + (sources."jest-jasmine2-26.6.3" // { + dependencies = [ + sources."@jest/types-26.6.2" + sources."@types/yargs-15.0.14" + sources."ansi-styles-4.3.0" + sources."chalk-4.1.2" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + sources."has-flag-4.0.0" + sources."pretty-format-26.6.2" + sources."react-is-17.0.2" + sources."supports-color-7.2.0" + ]; + }) + (sources."jest-leak-detector-26.6.2" // { + dependencies = [ + sources."@jest/types-26.6.2" + sources."@types/yargs-15.0.14" + sources."ansi-styles-4.3.0" + sources."chalk-4.1.2" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + sources."has-flag-4.0.0" + sources."jest-get-type-26.3.0" + sources."pretty-format-26.6.2" + sources."react-is-17.0.2" + sources."supports-color-7.2.0" + ]; + }) + (sources."jest-matcher-utils-26.6.2" // { + dependencies = [ + sources."@jest/types-26.6.2" + sources."@types/yargs-15.0.14" + sources."ansi-styles-4.3.0" + sources."chalk-4.1.2" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + sources."diff-sequences-26.6.2" + sources."has-flag-4.0.0" + sources."jest-diff-26.6.2" + sources."jest-get-type-26.3.0" + sources."pretty-format-26.6.2" + sources."react-is-17.0.2" + sources."supports-color-7.2.0" + ]; + }) + (sources."jest-message-util-26.6.2" // { + dependencies = [ + sources."@jest/types-26.6.2" + sources."@types/yargs-15.0.14" + sources."ansi-styles-4.3.0" + sources."chalk-4.1.2" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + sources."has-flag-4.0.0" + sources."pretty-format-26.6.2" + sources."react-is-17.0.2" + sources."supports-color-7.2.0" + ]; + }) + (sources."jest-mock-26.6.2" // { + dependencies = [ + sources."@jest/types-26.6.2" + sources."@types/yargs-15.0.14" + sources."ansi-styles-4.3.0" + sources."chalk-4.1.2" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + sources."has-flag-4.0.0" + sources."supports-color-7.2.0" + ]; + }) + sources."jest-pnp-resolver-1.2.2" + sources."jest-regex-util-26.0.0" + (sources."jest-resolve-26.6.0" // { + dependencies = [ + sources."@jest/types-26.6.2" + sources."@types/yargs-15.0.14" + sources."ansi-styles-4.3.0" + sources."chalk-4.1.2" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + sources."find-up-4.1.0" + sources."has-flag-4.0.0" + sources."locate-path-5.0.0" + sources."p-limit-2.3.0" + sources."p-locate-4.1.0" + sources."p-try-2.2.0" + sources."path-exists-4.0.0" + (sources."read-pkg-5.2.0" // { + dependencies = [ + sources."type-fest-0.6.0" + ]; + }) + sources."read-pkg-up-7.0.1" + sources."supports-color-7.2.0" + sources."type-fest-0.8.1" + ]; + }) + (sources."jest-resolve-dependencies-26.6.3" // { + dependencies = [ + sources."@jest/types-26.6.2" + sources."@types/yargs-15.0.14" + sources."ansi-styles-4.3.0" + sources."chalk-4.1.2" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + sources."has-flag-4.0.0" + sources."supports-color-7.2.0" + ]; + }) + (sources."jest-runner-26.6.3" // { + dependencies = [ + sources."@jest/types-26.6.2" + sources."@types/yargs-15.0.14" + sources."ansi-styles-4.3.0" + sources."chalk-4.1.2" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + sources."find-up-4.1.0" + sources."has-flag-4.0.0" + sources."jest-config-26.6.3" + sources."jest-get-type-26.3.0" + sources."jest-resolve-26.6.2" + sources."locate-path-5.0.0" + sources."p-limit-2.3.0" + sources."p-locate-4.1.0" + sources."p-try-2.2.0" + sources."path-exists-4.0.0" + sources."pretty-format-26.6.2" + sources."react-is-17.0.2" + (sources."read-pkg-5.2.0" // { + dependencies = [ + sources."type-fest-0.6.0" + ]; + }) + sources."read-pkg-up-7.0.1" + sources."supports-color-7.2.0" + sources."type-fest-0.8.1" + ]; + }) + (sources."jest-runtime-26.6.3" // { + dependencies = [ + sources."@jest/types-26.6.2" + sources."@types/yargs-15.0.14" + sources."ansi-styles-4.3.0" + sources."chalk-4.1.2" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + sources."find-up-4.1.0" + sources."has-flag-4.0.0" + sources."jest-config-26.6.3" + sources."jest-get-type-26.3.0" + sources."jest-resolve-26.6.2" + sources."locate-path-5.0.0" + sources."p-limit-2.3.0" + sources."p-locate-4.1.0" + sources."p-try-2.2.0" + sources."path-exists-4.0.0" + sources."pretty-format-26.6.2" + sources."react-is-17.0.2" + (sources."read-pkg-5.2.0" // { + dependencies = [ + sources."type-fest-0.6.0" + ]; + }) + sources."read-pkg-up-7.0.1" + sources."supports-color-7.2.0" + sources."type-fest-0.8.1" + ]; + }) + sources."jest-serializer-26.6.2" + (sources."jest-snapshot-26.6.2" // { + dependencies = [ + sources."@jest/types-26.6.2" + sources."@types/yargs-15.0.14" + sources."ansi-styles-4.3.0" + sources."chalk-4.1.2" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + sources."diff-sequences-26.6.2" + sources."find-up-4.1.0" + sources."has-flag-4.0.0" + sources."jest-diff-26.6.2" + sources."jest-get-type-26.3.0" + sources."jest-resolve-26.6.2" + sources."locate-path-5.0.0" + sources."p-limit-2.3.0" + sources."p-locate-4.1.0" + sources."p-try-2.2.0" + sources."path-exists-4.0.0" + sources."pretty-format-26.6.2" + sources."react-is-17.0.2" + (sources."read-pkg-5.2.0" // { + dependencies = [ + sources."type-fest-0.6.0" + ]; + }) + sources."read-pkg-up-7.0.1" + sources."supports-color-7.2.0" + sources."type-fest-0.8.1" + ]; + }) + (sources."jest-util-26.6.2" // { + dependencies = [ + sources."@jest/types-26.6.2" + sources."@types/yargs-15.0.14" + sources."ansi-styles-4.3.0" + sources."chalk-4.1.2" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + sources."has-flag-4.0.0" + sources."supports-color-7.2.0" + ]; + }) + (sources."jest-validate-26.6.2" // { + dependencies = [ + sources."@jest/types-26.6.2" + sources."@types/yargs-15.0.14" + sources."ansi-styles-4.3.0" + sources."chalk-4.1.2" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + sources."has-flag-4.0.0" + sources."jest-get-type-26.3.0" + sources."pretty-format-26.6.2" + sources."react-is-17.0.2" + sources."supports-color-7.2.0" + ]; + }) + (sources."jest-watch-typeahead-0.6.1" // { + dependencies = [ + sources."ansi-styles-4.3.0" + sources."chalk-4.1.2" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + sources."has-flag-4.0.0" + sources."supports-color-7.2.0" + ]; + }) + (sources."jest-watcher-26.6.2" // { + dependencies = [ + sources."@jest/types-26.6.2" + sources."@types/yargs-15.0.14" + sources."ansi-styles-4.3.0" + sources."chalk-4.1.2" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + sources."has-flag-4.0.0" + sources."supports-color-7.2.0" + ]; + }) + (sources."jest-worker-26.6.2" // { + dependencies = [ + sources."has-flag-4.0.0" + sources."supports-color-7.2.0" + ]; + }) + sources."jquery-3.6.0" + sources."jquery.flot.tooltip-0.9.0" + sources."js-tokens-4.0.0" + sources."js-yaml-3.14.1" + (sources."jsdom-16.7.0" // { + dependencies = [ + sources."acorn-8.5.0" + ]; + }) + sources."jsesc-2.5.2" + sources."json-parse-better-errors-1.0.2" + sources."json-parse-even-better-errors-2.3.1" + sources."json-schema-traverse-0.4.1" + sources."json-stable-stringify-without-jsonify-1.0.1" + sources."json3-3.3.3" + sources."json5-2.2.0" + sources."jsonfile-6.1.0" + sources."jsx-ast-utils-3.2.0" + sources."just-extend-4.2.1" + sources."killable-1.0.1" + sources."kind-of-6.0.3" + sources."kleur-3.0.3" + sources."klona-2.0.4" + sources."language-subtag-registry-0.3.21" + sources."language-tags-1.0.5" + sources."last-call-webpack-plugin-3.0.0" + sources."leven-3.1.0" + sources."levn-0.4.1" + sources."lezer-0.13.5" + sources."lezer-promql-0.20.0" + sources."lezer-tree-0.13.2" + sources."lines-and-columns-1.1.6" + (sources."load-json-file-4.0.0" // { + dependencies = [ + sources."parse-json-4.0.0" + sources."pify-3.0.0" + sources."strip-bom-3.0.0" + ]; + }) + sources."loader-runner-2.4.0" + sources."loader-utils-2.0.0" + sources."locate-path-2.0.0" + sources."lodash-4.17.21" + sources."lodash._reinterpolate-3.0.0" + sources."lodash.clonedeep-4.5.0" + sources."lodash.debounce-4.0.8" + sources."lodash.escape-4.0.1" + sources."lodash.flattendeep-4.4.0" + sources."lodash.get-4.4.2" + sources."lodash.isequal-4.5.0" + sources."lodash.memoize-4.1.2" + sources."lodash.merge-4.6.2" + sources."lodash.template-4.5.0" + sources."lodash.templatesettings-4.2.0" + sources."lodash.truncate-4.4.2" + sources."lodash.uniq-4.5.0" + sources."loglevel-1.7.1" + sources."loose-envify-1.4.0" + sources."lower-case-2.0.2" + sources."lru-cache-6.0.0" + sources."magic-string-0.25.7" + (sources."make-dir-2.1.0" // { + dependencies = [ + sources."semver-5.7.1" + ]; + }) + sources."makeerror-1.0.11" + sources."map-cache-0.2.2" + sources."map-visit-1.0.0" + sources."md5.js-1.3.5" + sources."mdn-data-2.0.4" + sources."media-typer-0.3.0" + sources."memory-fs-0.4.1" + sources."merge-descriptors-1.0.1" + sources."merge-stream-2.0.0" + sources."merge2-1.4.1" + sources."methods-1.1.2" + sources."microevent.ts-0.1.1" + sources."micromatch-4.0.4" + (sources."miller-rabin-4.0.1" // { + dependencies = [ + sources."bn.js-4.12.0" + ]; + }) + sources."mime-1.6.0" + sources."mime-db-1.49.0" + sources."mime-types-2.1.32" + sources."mimic-fn-2.1.0" + (sources."mini-css-extract-plugin-0.11.3" // { + dependencies = [ + sources."json5-1.0.1" + sources."loader-utils-1.4.0" + sources."schema-utils-1.0.0" + ]; + }) + sources."minimalistic-assert-1.0.1" + sources."minimalistic-crypto-utils-1.0.1" + sources."minimatch-3.0.4" + sources."minimist-1.2.5" + sources."minipass-3.1.3" + sources."minipass-collect-1.0.2" + sources."minipass-flush-1.0.5" + sources."minipass-pipeline-1.2.4" + sources."minizlib-2.1.2" + sources."mississippi-3.0.0" + sources."mixin-deep-1.3.2" + sources."mkdirp-0.5.5" + sources."moment-2.29.1" + sources."moment-timezone-0.5.33" + sources."moo-0.5.1" + (sources."move-concurrently-1.0.1" // { + dependencies = [ + sources."rimraf-2.7.1" + ]; + }) + sources."ms-2.1.2" + sources."multicast-dns-6.2.3" + sources."multicast-dns-service-types-1.1.0" + sources."mutationobserver-shim-0.3.7" + sources."nan-2.15.0" + sources."nanoid-3.1.25" + sources."nanomatch-1.2.13" + sources."native-url-0.2.6" + sources."natural-compare-1.4.0" + (sources."nearley-2.20.1" // { + dependencies = [ + sources."commander-2.20.3" + ]; + }) + sources."negotiator-0.6.2" + sources."neo-async-2.6.2" + sources."next-tick-1.0.0" + sources."nice-try-1.0.5" + sources."nise-4.1.0" + sources."no-case-3.0.4" + sources."node-fetch-2.6.1" + sources."node-forge-0.10.0" + sources."node-int64-0.4.0" + (sources."node-libs-browser-2.2.1" // { + dependencies = [ + sources."punycode-1.4.1" + ]; + }) + sources."node-modules-regexp-1.0.0" + sources."node-notifier-8.0.2" + sources."node-releases-1.1.75" + (sources."normalize-package-data-2.5.0" // { + dependencies = [ + sources."semver-5.7.1" + ]; + }) + sources."normalize-path-3.0.0" + sources."normalize-range-0.1.2" + sources."normalize-url-1.9.1" + sources."npm-run-path-4.0.1" + sources."nth-check-2.0.0" + sources."num2fraction-1.2.2" + sources."nwsapi-2.2.0" + sources."object-assign-4.1.1" + (sources."object-copy-0.1.0" // { + dependencies = [ + sources."define-property-0.2.5" + sources."is-accessor-descriptor-0.1.6" + sources."is-data-descriptor-0.1.4" + (sources."is-descriptor-0.1.6" // { + dependencies = [ + sources."kind-of-5.1.0" + ]; + }) + sources."kind-of-3.2.2" + ]; + }) + sources."object-inspect-1.11.0" + sources."object-is-1.1.5" + sources."object-keys-1.1.1" + sources."object-visit-1.0.1" + sources."object.assign-4.1.2" + sources."object.entries-1.1.4" + sources."object.fromentries-2.0.4" + sources."object.getownpropertydescriptors-2.1.2" + sources."object.pick-1.3.0" + sources."object.values-1.1.4" + sources."obuf-1.1.2" + sources."on-finished-2.3.0" + sources."on-headers-1.0.2" + sources."once-1.4.0" + sources."onetime-5.1.2" + sources."open-7.4.2" + (sources."opn-5.5.0" // { + dependencies = [ + sources."is-wsl-1.1.0" + ]; + }) + sources."optimize-css-assets-webpack-plugin-5.0.4" + sources."optionator-0.9.1" + sources."original-1.0.2" + sources."os-browserify-0.3.0" + sources."p-each-series-2.2.0" + sources."p-finally-1.0.0" + sources."p-limit-1.3.0" + sources."p-locate-2.0.0" + sources."p-map-4.0.0" + sources."p-retry-3.0.1" + sources."p-try-1.0.0" + sources."pako-1.0.11" + sources."parallel-transform-1.2.0" + sources."param-case-3.0.4" + sources."parent-module-1.0.1" + sources."parse-asn1-5.1.6" + sources."parse-json-5.2.0" + sources."parse-srcset-1.0.2" + sources."parse5-6.0.1" + sources."parse5-htmlparser2-tree-adapter-6.0.1" + sources."parseurl-1.3.3" + sources."pascal-case-3.1.2" + sources."pascalcase-0.1.1" + sources."path-browserify-0.0.1" + sources."path-dirname-1.0.2" + sources."path-exists-3.0.0" + sources."path-is-absolute-1.0.1" + sources."path-is-inside-1.0.2" + sources."path-key-3.1.1" + sources."path-parse-1.0.7" + sources."path-to-regexp-1.8.0" + sources."path-type-4.0.0" + sources."pbkdf2-3.1.2" + sources."performance-now-2.1.0" + sources."picomatch-2.3.0" + sources."pify-4.0.1" + sources."pinkie-2.0.4" + sources."pinkie-promise-2.0.1" + sources."pirates-4.0.1" + sources."pkg-dir-2.0.0" + sources."pkg-up-2.0.0" + sources."pnp-webpack-plugin-1.6.4" + sources."popper.js-1.16.1" + (sources."portfinder-1.0.28" // { + dependencies = [ + sources."debug-3.2.7" + ]; + }) + sources."posix-character-classes-0.1.1" + (sources."postcss-7.0.36" // { + dependencies = [ + sources."source-map-0.6.1" + sources."supports-color-6.1.0" + ]; + }) + sources."postcss-attribute-case-insensitive-4.0.2" + sources."postcss-browser-comments-3.0.0" + sources."postcss-calc-7.0.5" + sources."postcss-color-functional-notation-2.0.1" + sources."postcss-color-gray-5.0.0" + sources."postcss-color-hex-alpha-5.0.3" + sources."postcss-color-mod-function-3.0.3" + sources."postcss-color-rebeccapurple-4.0.1" + (sources."postcss-colormin-4.0.3" // { + dependencies = [ + sources."postcss-value-parser-3.3.1" + ]; + }) + (sources."postcss-convert-values-4.0.1" // { + dependencies = [ + sources."postcss-value-parser-3.3.1" + ]; + }) + sources."postcss-custom-media-7.0.8" + sources."postcss-custom-properties-8.0.11" + (sources."postcss-custom-selectors-5.1.2" // { + dependencies = [ + sources."cssesc-2.0.0" + sources."postcss-selector-parser-5.0.0" + ]; + }) + (sources."postcss-dir-pseudo-class-5.0.0" // { + dependencies = [ + sources."cssesc-2.0.0" + sources."postcss-selector-parser-5.0.0" + ]; + }) + sources."postcss-discard-comments-4.0.2" + sources."postcss-discard-duplicates-4.0.2" + sources."postcss-discard-empty-4.0.1" + sources."postcss-discard-overridden-4.0.1" + sources."postcss-double-position-gradients-1.0.0" + sources."postcss-env-function-2.0.2" + sources."postcss-flexbugs-fixes-4.2.1" + sources."postcss-focus-visible-4.0.0" + sources."postcss-focus-within-3.0.0" + sources."postcss-font-variant-4.0.1" + sources."postcss-gap-properties-2.0.0" + sources."postcss-image-set-function-3.0.1" + sources."postcss-initial-3.0.4" + sources."postcss-lab-function-2.0.1" + (sources."postcss-load-config-2.1.2" // { + dependencies = [ + sources."cosmiconfig-5.2.1" + sources."import-fresh-2.0.0" + sources."parse-json-4.0.0" + sources."resolve-from-3.0.0" + ]; + }) + (sources."postcss-loader-3.0.0" // { + dependencies = [ + sources."json5-1.0.1" + sources."loader-utils-1.4.0" + sources."schema-utils-1.0.0" + ]; + }) + sources."postcss-logical-3.0.0" + sources."postcss-media-minmax-4.0.0" + (sources."postcss-merge-longhand-4.0.11" // { + dependencies = [ + sources."postcss-value-parser-3.3.1" + ]; + }) + (sources."postcss-merge-rules-4.0.3" // { + dependencies = [ + sources."postcss-selector-parser-3.1.2" + ]; + }) + (sources."postcss-minify-font-values-4.0.2" // { + dependencies = [ + sources."postcss-value-parser-3.3.1" + ]; + }) + (sources."postcss-minify-gradients-4.0.2" // { + dependencies = [ + sources."postcss-value-parser-3.3.1" + ]; + }) + (sources."postcss-minify-params-4.0.2" // { + dependencies = [ + sources."postcss-value-parser-3.3.1" + ]; + }) + (sources."postcss-minify-selectors-4.0.2" // { + dependencies = [ + sources."postcss-selector-parser-3.1.2" + ]; + }) + sources."postcss-modules-extract-imports-2.0.0" + sources."postcss-modules-local-by-default-3.0.3" + sources."postcss-modules-scope-2.2.0" + sources."postcss-modules-values-3.0.0" + sources."postcss-nesting-7.0.1" + sources."postcss-normalize-8.0.1" + sources."postcss-normalize-charset-4.0.1" + (sources."postcss-normalize-display-values-4.0.2" // { + dependencies = [ + sources."postcss-value-parser-3.3.1" + ]; + }) + (sources."postcss-normalize-positions-4.0.2" // { + dependencies = [ + sources."postcss-value-parser-3.3.1" + ]; + }) + (sources."postcss-normalize-repeat-style-4.0.2" // { + dependencies = [ + sources."postcss-value-parser-3.3.1" + ]; + }) + (sources."postcss-normalize-string-4.0.2" // { + dependencies = [ + sources."postcss-value-parser-3.3.1" + ]; + }) + (sources."postcss-normalize-timing-functions-4.0.2" // { + dependencies = [ + sources."postcss-value-parser-3.3.1" + ]; + }) + (sources."postcss-normalize-unicode-4.0.1" // { + dependencies = [ + sources."postcss-value-parser-3.3.1" + ]; + }) + (sources."postcss-normalize-url-4.0.1" // { + dependencies = [ + sources."normalize-url-3.3.0" + sources."postcss-value-parser-3.3.1" + ]; + }) + (sources."postcss-normalize-whitespace-4.0.2" // { + dependencies = [ + sources."postcss-value-parser-3.3.1" + ]; + }) + (sources."postcss-ordered-values-4.1.2" // { + dependencies = [ + sources."postcss-value-parser-3.3.1" + ]; + }) + sources."postcss-overflow-shorthand-2.0.0" + sources."postcss-page-break-2.0.0" + sources."postcss-place-4.0.1" + sources."postcss-preset-env-6.7.0" + (sources."postcss-pseudo-class-any-link-6.0.0" // { + dependencies = [ + sources."cssesc-2.0.0" + sources."postcss-selector-parser-5.0.0" + ]; + }) + sources."postcss-reduce-initial-4.0.3" + (sources."postcss-reduce-transforms-4.0.2" // { + dependencies = [ + sources."postcss-value-parser-3.3.1" + ]; + }) + sources."postcss-replace-overflow-wrap-3.0.0" + (sources."postcss-safe-parser-5.0.2" // { + dependencies = [ + sources."postcss-8.3.6" + ]; + }) + sources."postcss-selector-matches-4.0.0" + sources."postcss-selector-not-4.0.1" + sources."postcss-selector-parser-6.0.6" + (sources."postcss-svgo-4.0.3" // { + dependencies = [ + sources."postcss-value-parser-3.3.1" + ]; + }) + sources."postcss-unique-selectors-4.0.1" + sources."postcss-value-parser-4.1.0" + sources."postcss-values-parser-2.0.1" + sources."prelude-ls-1.2.1" + sources."prepend-http-1.0.4" + sources."prettier-2.3.2" + sources."prettier-linter-helpers-1.0.0" + sources."pretty-bytes-5.6.0" + sources."pretty-error-2.1.2" + (sources."pretty-format-27.1.0" // { + dependencies = [ + sources."ansi-styles-5.2.0" + sources."react-is-17.0.2" + ]; + }) + sources."process-0.11.10" + sources."process-nextick-args-2.0.1" + sources."progress-2.0.3" + sources."promise-8.1.0" + sources."promise-inflight-1.0.1" + sources."promise-polyfill-8.2.0" + sources."prompts-2.4.0" + sources."prop-types-15.7.2" + sources."prop-types-exact-1.2.0" + sources."proxy-addr-2.0.7" + sources."prr-1.0.1" + sources."psl-1.8.0" + (sources."public-encrypt-4.0.3" // { + dependencies = [ + sources."bn.js-4.12.0" + ]; + }) + sources."pump-3.0.0" + (sources."pumpify-1.5.1" // { + dependencies = [ + sources."pump-2.0.1" + ]; + }) + sources."punycode-2.1.1" + sources."q-1.5.1" + sources."qs-6.7.0" + sources."query-string-4.3.4" + sources."querystring-0.2.1" + sources."querystring-es3-0.2.1" + sources."querystringify-2.2.0" + sources."queue-microtask-1.2.3" + sources."raf-3.4.1" + sources."raf-schd-4.0.3" + sources."railroad-diagrams-1.0.0" + sources."randexp-0.4.6" + sources."randombytes-2.1.0" + sources."randomfill-1.0.4" + sources."range-parser-1.2.1" + (sources."raw-body-2.4.0" // { + dependencies = [ + sources."bytes-3.1.0" + ]; + }) + sources."react-16.14.0" + sources."react-app-polyfill-2.0.0" + sources."react-copy-to-clipboard-5.0.4" + (sources."react-dev-utils-11.0.4" // { + dependencies = [ + sources."@babel/code-frame-7.10.4" + sources."browserslist-4.14.2" + sources."escape-string-regexp-2.0.0" + sources."find-up-4.1.0" + sources."globby-11.0.1" + sources."ignore-5.1.8" + sources."locate-path-5.0.0" + sources."p-limit-2.3.0" + sources."p-locate-4.1.0" + sources."p-try-2.2.0" + sources."path-exists-4.0.0" + (sources."pkg-up-3.1.0" // { + dependencies = [ + sources."find-up-3.0.0" + sources."locate-path-3.0.0" + sources."p-locate-3.0.0" + sources."path-exists-3.0.0" + ]; + }) + ]; + }) + sources."react-dom-16.14.0" + sources."react-error-overlay-6.0.9" + sources."react-is-16.13.1" + sources."react-lifecycles-compat-3.0.4" + sources."react-refresh-0.8.3" + sources."react-resize-detector-5.2.0" + (sources."react-router-dom-5.3.0" // { + dependencies = [ + (sources."react-router-5.2.1" // { + dependencies = [ + sources."mini-create-react-context-0.4.1" + ]; + }) + ]; + }) + (sources."react-scripts-4.0.3" // { + dependencies = [ + (sources."@babel/core-7.12.3" // { + dependencies = [ + sources."semver-5.7.1" + ]; + }) + sources."resolve-1.18.1" + sources."semver-7.3.2" + ]; + }) + sources."react-test-renderer-16.14.0" + (sources."reactstrap-8.10.0" // { + dependencies = [ + (sources."react-popper-1.3.11" // { + dependencies = [ + sources."@hypnosphi/create-react-context-0.3.1" + ]; + }) + sources."react-transition-group-2.9.0" + ]; + }) + (sources."read-pkg-3.0.0" // { + dependencies = [ + sources."path-type-3.0.0" + sources."pify-3.0.0" + ]; + }) + sources."read-pkg-up-3.0.0" + (sources."readable-stream-2.3.7" // { + dependencies = [ + sources."isarray-1.0.0" + sources."string_decoder-1.1.1" + ]; + }) + sources."readdirp-3.6.0" + sources."recursive-readdir-2.2.2" + sources."reflect.ownkeys-0.2.0" + sources."regenerate-1.4.2" + sources."regenerate-unicode-properties-8.2.0" + sources."regenerator-runtime-0.13.9" + sources."regenerator-transform-0.14.5" + sources."regex-not-1.0.2" + sources."regex-parser-2.2.11" + sources."regexp.prototype.flags-1.3.1" + sources."regexpp-3.2.0" + sources."regexpu-core-4.7.1" + sources."regjsgen-0.5.2" + (sources."regjsparser-0.6.9" // { + dependencies = [ + sources."jsesc-0.5.0" + ]; + }) + sources."relateurl-0.2.7" + sources."remove-trailing-separator-1.1.0" + (sources."renderkid-2.0.7" // { + dependencies = [ + sources."ansi-regex-2.1.1" + sources."htmlparser2-6.1.0" + sources."strip-ansi-3.0.1" + ]; + }) + sources."repeat-element-1.1.4" + sources."repeat-string-1.6.1" + sources."require-directory-2.1.1" + sources."require-from-string-2.0.2" + sources."require-main-filename-2.0.0" + sources."requires-port-1.0.0" + sources."resize-observer-polyfill-1.5.1" + sources."resolve-1.20.0" + (sources."resolve-cwd-3.0.0" // { + dependencies = [ + sources."resolve-from-5.0.0" + ]; + }) + sources."resolve-from-4.0.0" + sources."resolve-pathname-3.0.0" + sources."resolve-url-0.2.1" + (sources."resolve-url-loader-3.1.4" // { + dependencies = [ + sources."camelcase-5.3.1" + sources."convert-source-map-1.7.0" + sources."emojis-list-2.1.0" + sources."json5-1.0.1" + sources."loader-utils-1.2.3" + sources."source-map-0.6.1" + ]; + }) + sources."ret-0.1.15" + sources."retry-0.12.0" + sources."reusify-1.0.4" + (sources."rework-1.0.1" // { + dependencies = [ + sources."convert-source-map-0.3.5" + ]; + }) + sources."rework-visit-1.0.0" + sources."rgb-regex-1.0.1" + sources."rgba-regex-1.0.0" + sources."rimraf-3.0.2" + sources."ripemd160-2.0.2" + sources."rollup-1.32.1" + sources."rollup-plugin-babel-4.4.0" + (sources."rollup-plugin-terser-5.3.1" // { + dependencies = [ + sources."jest-worker-24.9.0" + sources."serialize-javascript-4.0.0" + sources."supports-color-6.1.0" + ]; + }) + (sources."rollup-pluginutils-2.8.2" // { + dependencies = [ + sources."estree-walker-0.6.1" + ]; + }) + sources."rst-selector-parser-2.2.3" + sources."rsvp-4.8.5" + sources."run-parallel-1.2.0" + sources."run-queue-1.0.3" + sources."safe-buffer-5.1.2" + sources."safe-regex-1.1.0" + sources."safer-buffer-2.1.2" + (sources."sane-4.1.0" // { + dependencies = [ + sources."anymatch-2.0.0" + (sources."braces-2.3.2" // { + dependencies = [ + sources."extend-shallow-2.0.1" + ]; + }) + sources."cross-spawn-6.0.5" + sources."execa-1.0.0" + (sources."fill-range-4.0.0" // { + dependencies = [ + sources."extend-shallow-2.0.1" + ]; + }) + sources."get-stream-4.1.0" + sources."is-extendable-0.1.1" + (sources."is-number-3.0.0" // { + dependencies = [ + sources."kind-of-3.2.2" + ]; + }) + sources."is-stream-1.1.0" + sources."micromatch-3.1.10" + sources."normalize-path-2.1.1" + sources."npm-run-path-2.0.2" + sources."path-key-2.0.1" + sources."semver-5.7.1" + sources."shebang-command-1.2.0" + sources."shebang-regex-1.0.0" + sources."to-regex-range-2.1.1" + sources."which-1.3.1" + ]; + }) + (sources."sanitize-html-2.4.0" // { + dependencies = [ + sources."escape-string-regexp-4.0.0" + sources."htmlparser2-6.1.0" + sources."postcss-8.3.6" + ]; + }) + sources."sanitize.css-10.0.0" + sources."sass-1.39.0" + (sources."sass-loader-10.2.0" // { + dependencies = [ + sources."schema-utils-3.1.1" + ]; + }) + sources."sax-1.2.4" + sources."saxes-5.0.1" + sources."scheduler-0.19.1" + sources."schema-utils-2.7.1" + sources."select-hose-2.0.0" + sources."selfsigned-1.10.11" + sources."semver-7.3.5" + (sources."send-0.17.1" // { + dependencies = [ + (sources."debug-2.6.9" // { + dependencies = [ + sources."ms-2.0.0" + ]; + }) + sources."ms-2.1.1" + ]; + }) + sources."serialize-javascript-5.0.1" + (sources."serve-index-1.9.1" // { + dependencies = [ + sources."debug-2.6.9" + sources."http-errors-1.6.3" + sources."inherits-2.0.3" + sources."ms-2.0.0" + sources."setprototypeof-1.1.0" + ]; + }) + sources."serve-static-1.14.1" + sources."set-blocking-2.0.0" + (sources."set-value-2.0.1" // { + dependencies = [ + sources."extend-shallow-2.0.1" + sources."is-extendable-0.1.1" + sources."is-plain-object-2.0.4" + ]; + }) + sources."setimmediate-1.0.5" + sources."setprototypeof-1.1.1" + sources."sha.js-2.4.11" + sources."shebang-command-2.0.0" + sources."shebang-regex-3.0.0" + sources."shell-quote-1.7.2" + sources."shellwords-0.1.1" + sources."side-channel-1.0.4" + sources."signal-exit-3.0.3" + (sources."simple-swizzle-0.2.2" // { + dependencies = [ + sources."is-arrayish-0.3.2" + ]; + }) + (sources."sinon-9.2.4" // { + dependencies = [ + sources."has-flag-4.0.0" + sources."supports-color-7.2.0" + ]; + }) + sources."sisteransi-1.0.5" + sources."slash-3.0.0" + (sources."slice-ansi-4.0.0" // { + dependencies = [ + sources."ansi-styles-4.3.0" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + ]; + }) + (sources."snapdragon-0.8.2" // { + dependencies = [ + sources."debug-2.6.9" + sources."define-property-0.2.5" + sources."extend-shallow-2.0.1" + (sources."is-accessor-descriptor-0.1.6" // { + dependencies = [ + sources."kind-of-3.2.2" + ]; + }) + (sources."is-data-descriptor-0.1.4" // { + dependencies = [ + sources."kind-of-3.2.2" + ]; + }) + sources."is-descriptor-0.1.6" + sources."is-extendable-0.1.1" + sources."kind-of-5.1.0" + sources."ms-2.0.0" + ]; + }) + (sources."snapdragon-node-2.1.1" // { + dependencies = [ + sources."define-property-1.0.0" + ]; + }) + (sources."snapdragon-util-3.0.1" // { + dependencies = [ + sources."kind-of-3.2.2" + ]; + }) + (sources."sockjs-0.3.21" // { + dependencies = [ + sources."uuid-3.4.0" + ]; + }) + (sources."sockjs-client-1.5.2" // { + dependencies = [ + sources."debug-3.2.7" + ]; + }) + sources."sort-keys-1.1.2" + sources."source-list-map-2.0.1" + sources."source-map-0.5.7" + sources."source-map-js-0.6.2" + sources."source-map-resolve-0.5.3" + (sources."source-map-support-0.5.19" // { + dependencies = [ + sources."source-map-0.6.1" + ]; + }) + sources."source-map-url-0.4.1" + sources."sourcemap-codec-1.4.8" + sources."spdx-correct-3.1.1" + sources."spdx-exceptions-2.3.0" + sources."spdx-expression-parse-3.0.1" + sources."spdx-license-ids-3.0.10" + sources."spdy-4.0.2" + (sources."spdy-transport-3.0.0" // { + dependencies = [ + sources."readable-stream-3.6.0" + ]; + }) + sources."split-string-3.1.0" + sources."sprintf-js-1.0.3" + sources."ssri-8.0.1" + sources."stable-0.1.8" + (sources."stack-utils-2.0.3" // { + dependencies = [ + sources."escape-string-regexp-2.0.0" + ]; + }) + sources."stackframe-1.2.0" + (sources."static-extend-0.1.2" // { + dependencies = [ + sources."define-property-0.2.5" + (sources."is-accessor-descriptor-0.1.6" // { + dependencies = [ + sources."kind-of-3.2.2" + ]; + }) + (sources."is-data-descriptor-0.1.4" // { + dependencies = [ + sources."kind-of-3.2.2" + ]; + }) + sources."is-descriptor-0.1.6" + sources."kind-of-5.1.0" + ]; + }) + sources."statuses-1.5.0" + sources."stream-browserify-2.0.2" + sources."stream-each-1.2.3" + sources."stream-http-2.8.3" + sources."stream-shift-1.0.1" + sources."strict-uri-encode-1.1.0" + sources."string-length-4.0.2" + sources."string-natural-compare-3.0.1" + (sources."string-width-4.2.2" // { + dependencies = [ + sources."emoji-regex-8.0.0" + ]; + }) + sources."string.prototype.matchall-4.0.5" + sources."string.prototype.trim-1.2.4" + sources."string.prototype.trimend-1.0.4" + sources."string.prototype.trimstart-1.0.4" + (sources."string_decoder-1.3.0" // { + dependencies = [ + sources."safe-buffer-5.2.1" + ]; + }) + sources."stringify-object-3.3.0" + sources."strip-ansi-6.0.0" + sources."strip-bom-4.0.0" + sources."strip-comments-1.0.2" + sources."strip-eof-1.0.0" + sources."strip-final-newline-2.0.0" + sources."strip-json-comments-3.1.1" + sources."style-loader-1.3.0" + sources."style-mod-4.0.0" + (sources."stylehacks-4.0.3" // { + dependencies = [ + sources."postcss-selector-parser-3.1.2" + ]; + }) + sources."supports-color-5.5.0" + (sources."supports-hyperlinks-2.2.0" // { + dependencies = [ + sources."has-flag-4.0.0" + sources."supports-color-7.2.0" + ]; + }) + sources."svg-parser-2.0.4" + (sources."svgo-1.3.2" // { + dependencies = [ + sources."css-select-2.1.0" + sources."css-what-3.4.2" + sources."dom-serializer-0.2.2" + (sources."domutils-1.7.0" // { + dependencies = [ + sources."domelementtype-1.3.1" + ]; + }) + sources."nth-check-1.0.2" + ]; + }) + sources."symbol-tree-3.2.4" + (sources."table-6.7.1" // { + dependencies = [ + sources."ajv-8.6.2" + sources."json-schema-traverse-1.0.0" + ]; + }) + sources."tapable-1.1.3" + (sources."tar-6.1.11" // { + dependencies = [ + sources."mkdirp-1.0.4" + ]; + }) + sources."temp-dir-1.0.0" + sources."tempusdominus-bootstrap-4-5.39.0" + (sources."tempusdominus-core-5.19.0" // { + dependencies = [ + sources."moment-2.24.0" + ]; + }) + (sources."tempy-0.3.0" // { + dependencies = [ + sources."type-fest-0.3.1" + ]; + }) + sources."terminal-link-2.1.1" + (sources."terser-4.8.0" // { + dependencies = [ + sources."commander-2.20.3" + sources."source-map-0.6.1" + ]; + }) + (sources."terser-webpack-plugin-4.2.3" // { + dependencies = [ + sources."commander-2.20.3" + sources."find-cache-dir-3.3.2" + sources."find-up-4.1.0" + sources."locate-path-5.0.0" + sources."make-dir-3.1.0" + sources."p-limit-3.1.0" + (sources."p-locate-4.1.0" // { + dependencies = [ + sources."p-limit-2.3.0" + ]; + }) + sources."p-try-2.2.0" + sources."path-exists-4.0.0" + sources."pkg-dir-4.2.0" + sources."schema-utils-3.1.1" + sources."semver-6.3.0" + sources."source-map-0.6.1" + (sources."terser-5.7.2" // { + dependencies = [ + sources."source-map-0.7.3" + ]; + }) + ]; + }) + sources."test-exclude-6.0.0" + sources."text-table-0.2.0" + sources."throat-5.0.0" + sources."through2-2.0.5" + sources."thunky-1.1.0" + sources."timers-browserify-2.0.12" + sources."timsort-0.3.0" + sources."tiny-invariant-1.1.0" + sources."tiny-warning-1.0.3" + sources."tmpl-1.0.5" + sources."to-arraybuffer-1.0.1" + sources."to-fast-properties-2.0.0" + (sources."to-object-path-0.3.0" // { + dependencies = [ + sources."kind-of-3.2.2" + ]; + }) + sources."to-regex-3.0.2" + sources."to-regex-range-5.0.1" + sources."toggle-selection-1.0.6" + sources."toidentifier-1.0.0" + (sources."tough-cookie-4.0.0" // { + dependencies = [ + sources."universalify-0.1.2" + ]; + }) + sources."tr46-2.1.0" + sources."tryer-1.0.1" + sources."ts-pnp-1.2.0" + (sources."tsconfig-paths-3.11.0" // { + dependencies = [ + sources."json5-1.0.1" + sources."strip-bom-3.0.0" + ]; + }) + sources."tslib-2.3.1" + (sources."tsutils-3.21.0" // { + dependencies = [ + sources."tslib-1.14.1" + ]; + }) + sources."tty-browserify-0.0.0" + sources."type-1.2.0" + sources."type-check-0.4.0" + sources."type-detect-4.0.8" + sources."type-fest-0.21.3" + sources."type-is-1.6.18" + sources."typed-styles-0.0.7" + sources."typedarray-0.0.6" + sources."typedarray-to-buffer-3.1.5" + sources."typescript-4.4.2" + sources."unbox-primitive-1.0.1" + sources."unicode-canonical-property-names-ecmascript-1.0.4" + sources."unicode-match-property-ecmascript-1.0.4" + sources."unicode-match-property-value-ecmascript-1.2.0" + sources."unicode-property-aliases-ecmascript-1.1.0" + (sources."union-value-1.0.1" // { + dependencies = [ + sources."is-extendable-0.1.1" + ]; + }) + sources."uniq-1.0.1" + sources."uniqs-2.0.0" + sources."unique-filename-1.1.1" + sources."unique-slug-2.0.2" + sources."unique-string-1.0.0" + sources."universalify-2.0.0" + sources."unpipe-1.0.0" + sources."unquote-1.1.1" + (sources."unset-value-1.0.0" // { + dependencies = [ + (sources."has-value-0.3.1" // { + dependencies = [ + sources."isobject-2.1.0" + ]; + }) + sources."has-values-0.1.4" + sources."isarray-1.0.0" + ]; + }) + sources."upath-1.2.0" + sources."uri-js-4.4.1" + sources."urix-0.1.0" + (sources."url-0.11.0" // { + dependencies = [ + sources."punycode-1.3.2" + sources."querystring-0.2.0" + ]; + }) + (sources."url-loader-4.1.1" // { + dependencies = [ + sources."schema-utils-3.1.1" + ]; + }) + sources."url-parse-1.5.3" + sources."use-3.1.1" + sources."use-media-1.4.0" + (sources."util-0.11.1" // { + dependencies = [ + sources."inherits-2.0.3" + ]; + }) + sources."util-deprecate-1.0.2" + sources."util.promisify-1.0.0" + sources."utila-0.4.0" + sources."utils-merge-1.0.1" + sources."uuid-8.3.2" + sources."v8-compile-cache-2.3.0" + (sources."v8-to-istanbul-7.1.2" // { + dependencies = [ + sources."source-map-0.7.3" + ]; + }) + sources."validate-npm-package-license-3.0.4" + sources."value-equal-1.0.1" + sources."vary-1.1.2" + sources."vendors-1.0.4" + sources."vm-browserify-1.1.2" + sources."w3c-hr-time-1.0.2" + sources."w3c-keyname-2.2.4" + sources."w3c-xmlserializer-2.0.0" + sources."walker-1.0.7" + sources."warning-4.0.3" + sources."watchpack-1.7.5" + (sources."watchpack-chokidar2-2.0.1" // { + dependencies = [ + (sources."anymatch-2.0.0" // { + dependencies = [ + sources."normalize-path-2.1.1" + ]; + }) + sources."binary-extensions-1.13.1" + (sources."braces-2.3.2" // { + dependencies = [ + sources."extend-shallow-2.0.1" + ]; + }) + sources."chokidar-2.1.8" + (sources."fill-range-4.0.0" // { + dependencies = [ + sources."extend-shallow-2.0.1" + ]; + }) + sources."fsevents-1.2.13" + (sources."glob-parent-3.1.0" // { + dependencies = [ + sources."is-glob-3.1.0" + ]; + }) + sources."is-binary-path-1.0.1" + sources."is-extendable-0.1.1" + (sources."is-number-3.0.0" // { + dependencies = [ + sources."kind-of-3.2.2" + ]; + }) + sources."micromatch-3.1.10" + sources."readdirp-2.2.1" + sources."to-regex-range-2.1.1" + ]; + }) + sources."wbuf-1.7.3" + sources."webidl-conversions-6.1.0" + (sources."webpack-4.44.2" // { + dependencies = [ + sources."acorn-6.4.2" + (sources."braces-2.3.2" // { + dependencies = [ + sources."extend-shallow-2.0.1" + ]; + }) + sources."cacache-12.0.4" + sources."chownr-1.1.4" + sources."eslint-scope-4.0.3" + sources."estraverse-4.3.0" + (sources."fill-range-4.0.0" // { + dependencies = [ + sources."extend-shallow-2.0.1" + ]; + }) + sources."is-extendable-0.1.1" + (sources."is-number-3.0.0" // { + dependencies = [ + sources."kind-of-3.2.2" + ]; + }) + sources."is-wsl-1.1.0" + sources."json5-1.0.1" + sources."loader-utils-1.4.0" + sources."lru-cache-5.1.1" + sources."micromatch-3.1.10" + sources."rimraf-2.7.1" + sources."schema-utils-1.0.0" + sources."serialize-javascript-4.0.0" + sources."source-map-0.6.1" + sources."ssri-6.0.2" + sources."terser-webpack-plugin-1.4.5" + sources."to-regex-range-2.1.1" + sources."yallist-3.1.1" + ]; + }) + (sources."webpack-dev-middleware-3.7.3" // { + dependencies = [ + sources."mime-2.5.2" + ]; + }) + (sources."webpack-dev-server-3.11.1" // { + dependencies = [ + sources."ansi-regex-2.1.1" + (sources."anymatch-2.0.0" // { + dependencies = [ + sources."normalize-path-2.1.1" + ]; + }) + sources."binary-extensions-1.13.1" + (sources."braces-2.3.2" // { + dependencies = [ + sources."extend-shallow-2.0.1" + ]; + }) + sources."camelcase-5.3.1" + sources."chokidar-2.1.8" + (sources."cliui-5.0.0" // { + dependencies = [ + sources."ansi-regex-4.1.0" + sources."strip-ansi-5.2.0" + ]; + }) + sources."emoji-regex-7.0.3" + (sources."fill-range-4.0.0" // { + dependencies = [ + sources."extend-shallow-2.0.1" + ]; + }) + sources."find-up-3.0.0" + sources."fsevents-1.2.13" + (sources."glob-parent-3.1.0" // { + dependencies = [ + sources."is-glob-3.1.0" + ]; + }) + sources."import-local-2.0.0" + sources."is-absolute-url-3.0.3" + sources."is-binary-path-1.0.1" + sources."is-extendable-0.1.1" + sources."is-fullwidth-code-point-2.0.0" + (sources."is-number-3.0.0" // { + dependencies = [ + sources."kind-of-3.2.2" + ]; + }) + sources."locate-path-3.0.0" + sources."micromatch-3.1.10" + sources."p-limit-2.3.0" + sources."p-locate-3.0.0" + sources."p-try-2.2.0" + sources."pkg-dir-3.0.0" + sources."readdirp-2.2.1" + sources."resolve-cwd-2.0.0" + sources."resolve-from-3.0.0" + sources."schema-utils-1.0.0" + sources."semver-6.3.0" + (sources."string-width-3.1.0" // { + dependencies = [ + sources."ansi-regex-4.1.0" + sources."strip-ansi-5.2.0" + ]; + }) + sources."strip-ansi-3.0.1" + sources."supports-color-6.1.0" + sources."to-regex-range-2.1.1" + (sources."wrap-ansi-5.1.0" // { + dependencies = [ + sources."ansi-regex-4.1.0" + sources."strip-ansi-5.2.0" + ]; + }) + sources."ws-6.2.2" + sources."yargs-13.3.2" + sources."yargs-parser-13.1.2" + ]; + }) + (sources."webpack-log-2.0.0" // { + dependencies = [ + sources."ansi-colors-3.2.4" + sources."uuid-3.4.0" + ]; + }) + (sources."webpack-manifest-plugin-2.2.0" // { + dependencies = [ + sources."fs-extra-7.0.1" + sources."jsonfile-4.0.0" + sources."universalify-0.1.2" + ]; + }) + (sources."webpack-sources-1.4.3" // { + dependencies = [ + sources."source-map-0.6.1" + ]; + }) + sources."websocket-driver-0.7.4" + sources."websocket-extensions-0.1.4" + sources."whatwg-encoding-1.0.5" + sources."whatwg-fetch-3.6.2" + sources."whatwg-mimetype-2.3.0" + sources."whatwg-url-8.7.0" + sources."which-2.0.2" + sources."which-boxed-primitive-1.0.2" + sources."which-module-2.0.0" + sources."word-wrap-1.2.3" + sources."workbox-background-sync-5.1.4" + sources."workbox-broadcast-update-5.1.4" + (sources."workbox-build-5.1.4" // { + dependencies = [ + sources."fs-extra-8.1.0" + sources."jsonfile-4.0.0" + sources."source-map-0.7.3" + sources."universalify-0.1.2" + ]; + }) + sources."workbox-cacheable-response-5.1.4" + sources."workbox-core-5.1.4" + sources."workbox-expiration-5.1.4" + sources."workbox-google-analytics-5.1.4" + sources."workbox-navigation-preload-5.1.4" + sources."workbox-precaching-5.1.4" + sources."workbox-range-requests-5.1.4" + sources."workbox-routing-5.1.4" + sources."workbox-strategies-5.1.4" + sources."workbox-streams-5.1.4" + sources."workbox-sw-5.1.4" + sources."workbox-webpack-plugin-5.1.4" + sources."workbox-window-5.1.4" + sources."worker-farm-1.7.0" + sources."worker-rpc-0.1.1" + (sources."wrap-ansi-6.2.0" // { + dependencies = [ + sources."ansi-styles-4.3.0" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + ]; + }) + sources."wrappy-1.0.2" + sources."write-file-atomic-3.0.3" + sources."ws-7.5.4" + sources."xml-name-validator-3.0.0" + sources."xmlchars-2.2.0" + sources."xtend-4.0.2" + sources."y18n-4.0.3" + sources."yallist-4.0.0" + sources."yaml-1.10.2" + (sources."yargs-15.4.1" // { + dependencies = [ + sources."find-up-4.1.0" + sources."locate-path-5.0.0" + sources."p-limit-2.3.0" + sources."p-locate-4.1.0" + sources."p-try-2.2.0" + sources."path-exists-4.0.0" + ]; + }) + (sources."yargs-parser-18.1.3" // { + dependencies = [ + sources."camelcase-5.3.1" + ]; + }) + sources."yocto-queue-0.1.0" + ]; + buildInputs = globalBuildInputs; + meta = { + }; + production = false; + bypassCache = true; + reconstructLock = false; + }; +in +{ + args = args; + sources = sources; + tarball = nodeEnv.buildNodeSourceDist args; + package = nodeEnv.buildNodePackage args; + shell = nodeEnv.buildNodeShell args; + nodeDependencies = nodeEnv.buildNodeDependencies (lib.overrideExisting args { + src = stdenv.mkDerivation { + name = args.name + "-package-json"; + src = nix-gitignore.gitignoreSourcePure [ + "*" + "!package.json" + "!package-lock.json" + ] args.src; + dontBuild = true; + installPhase = "mkdir -p $out; cp -r ./* $out;"; + }; + }); +} diff --git a/pkgs/servers/monitoring/prometheus/webui/webui/package-lock.json b/pkgs/servers/monitoring/prometheus/webui/webui/package-lock.json new file mode 100644 index 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"requires": { + "camelcase": "^5.0.0", + "decamelize": "^1.2.0" + }, + "dependencies": { + "camelcase": { + "version": "5.3.1", + "resolved": "https://registry.npmjs.org/camelcase/-/camelcase-5.3.1.tgz", + "integrity": "sha512-L28STB170nwWS63UjtlEOE3dldQApaJXZkOI1uMFfzf3rRuPegHaHesyee+YxQ+W6SvRDQV6UrdOdRiR153wJg==", + "dev": true + } + } + }, + "yocto-queue": { + "version": "0.1.0", + "resolved": "https://registry.npmjs.org/yocto-queue/-/yocto-queue-0.1.0.tgz", + "integrity": "sha512-rVksvsnNCdJ/ohGc6xgPwyN8eheCxsiLM8mxuE/t/mOVqJewPuO1miLpTHQiRgTKCLexL4MeAFVagts7HmNZ2Q==", + "dev": true + } + } +} diff --git a/pkgs/servers/monitoring/prometheus/webui-package.json b/pkgs/servers/monitoring/prometheus/webui/webui/package.json similarity index 78% rename from pkgs/servers/monitoring/prometheus/webui-package.json rename to pkgs/servers/monitoring/prometheus/webui/webui/package.json index d46aeaa5dca0..6a7f124a7c47 100644 --- a/pkgs/servers/monitoring/prometheus/webui-package.json +++ b/pkgs/servers/monitoring/prometheus/webui/webui/package.json @@ -19,13 +19,11 @@ "@fortawesome/fontawesome-svg-core": "^1.2.14", "@fortawesome/free-solid-svg-icons": "^5.7.1", "@fortawesome/react-fontawesome": "^0.1.4", - "@reach/router": "^1.2.1", + "@nexucis/fuzzy": "^0.3.0", "bootstrap": "^4.6.0", - "codemirror-promql": "^0.15.0", + "codemirror-promql": "^0.17.0", "css.escape": "^1.5.1", "downshift": "^3.4.8", - "enzyme-to-json": "^3.4.3", - "fuzzy": "^0.1.3", "i": "^0.3.6", "jquery": "^3.5.1", "jquery.flot.tooltip": "^0.9.0", @@ -37,20 +35,19 @@ "react-copy-to-clipboard": "^5.0.1", "react-dom": "^16.7.0", "react-resize-detector": "^5.0.7", - "react-scripts": "3.4.4", + "react-router-dom": "^5.2.1", "react-test-renderer": "^16.9.0", "reactstrap": "^8.9.0", "sanitize-html": "^2.3.3", - "sass": "1.32.10", + "sass": "1.39.0", "tempusdominus-bootstrap-4": "^5.1.2", "tempusdominus-core": "^5.0.3", - "typescript": "^3.3.3", "use-media": "^1.4.0" }, "scripts": { "start": "react-scripts start", "build": "react-scripts build", - "test": "react-scripts test --runInBand", + "test": "react-scripts test --runInBand --resetMocks=false", "test:debug": "react-scripts --inspect-brk test --runInBand --no-cache", "eject": "react-scripts eject", "lint:ci": "eslint --quiet \"src/**/*.{ts,tsx}\"", @@ -71,36 +68,31 @@ "@testing-library/react-hooks": "^3.1.1", "@types/enzyme": "^3.10.3", "@types/enzyme-adapter-react-16": "^1.0.5", - "@types/flot": "0.0.31", - "@types/jest": "^26.0.10", + "@types/flot": "0.0.32", + "@types/jest": "^27.0.0", "@types/jquery": "^3.5.1", "@types/moment-timezone": "^0.5.10", "@types/node": "^12.11.1", - "@types/reach__router": "^1.2.6", "@types/react": "^16.8.2", "@types/react-copy-to-clipboard": "^5.0.0", "@types/react-dom": "^16.8.0", "@types/react-resize-detector": "^5.0.0", + "@types/react-router-dom": "^5.1.8", "@types/reactstrap": "^8.7.2", "@types/sanitize-html": "^1.20.2", "@types/sinon": "^9.0.4", - "@typescript-eslint/eslint-plugin": "2.x", - "@typescript-eslint/parser": "2.x", "enzyme": "^3.10.0", "enzyme-adapter-react-16": "^1.15.1", - "eslint": "6.x", - "eslint-config-prettier": "^6.4.0", - "eslint-config-react-app": "^5.0.2", - "eslint-plugin-flowtype": "4.x", - "eslint-plugin-import": "2.x", - "eslint-plugin-jsx-a11y": "6.x", - "eslint-plugin-prettier": "^3.1.1", - "eslint-plugin-react": "7.x", - "eslint-plugin-react-hooks": "2.x", + "enzyme-to-json": "^3.4.3", + "eslint-config-prettier": "^8.3.0", + "eslint-config-react-app": "^6.0.0", + "eslint-plugin-prettier": "^4.0.0", "jest-fetch-mock": "^3.0.3", "mutationobserver-shim": "^0.3.7", - "prettier": "^1.18.2", - "sinon": "^9.0.3" + "prettier": "^2.3.2", + "react-scripts": "4.0.3", + "sinon": "^9.0.3", + "typescript": "^4.4.2" }, "proxy": "http://localhost:9090", "jest": { @@ -110,5 +102,8 @@ "transformIgnorePatterns": [ "/node_modules/(?!codemirror-promql).+(js|jsx)$" ] + }, + "optionalDependencies": { + "fsevents": "^2.3.2" } } diff --git a/pkgs/servers/monitoring/zabbix/agent2.nix b/pkgs/servers/monitoring/zabbix/agent2.nix index 97179fa26680..74b23c0bbd25 100644 --- a/pkgs/servers/monitoring/zabbix/agent2.nix +++ b/pkgs/servers/monitoring/zabbix/agent2.nix @@ -12,7 +12,7 @@ import ./versions.nix ({ version, sha256 }: modRoot = "src/go"; - vendorSha256 = "1iyi7lnknr42gbv25illqnnjc7mshv73ih9anc6rxbf87n9s46ac"; + vendorSha256 = "1417qi061xc4m55z0vz420fr7qpi24kw5yj9wq7iic92smakgkjn"; nativeBuildInputs = [ autoreconfHook pkg-config ]; buildInputs = [ libiconv openssl pcre zlib ]; diff --git a/pkgs/servers/moonraker/default.nix b/pkgs/servers/moonraker/default.nix index 4108c1ef1738..c99cac94f059 100644 --- a/pkgs/servers/moonraker/default.nix +++ b/pkgs/servers/moonraker/default.nix @@ -15,13 +15,13 @@ let ]); in stdenvNoCC.mkDerivation rec { pname = "moonraker"; - version = "unstable-2021-10-10"; + version = "unstable-2021-10-24"; src = fetchFromGitHub { owner = "Arksine"; repo = "moonraker"; - rev = "562f971c3d039fb3a8a1d7f8362e34a15d851b62"; - sha256 = "ruutyDeR79X13+LkhkHHymxHMZjGY2mde5YT1J9CNDQ="; + rev = "1dd89bac4b7153b77eb4208cc151de17e612b6fc"; + sha256 = "dxtDXpviasvfjQuhtjfTjZ6OgKWAsHjaInlyYlpLzYY="; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/servers/nextcloud/default.nix b/pkgs/servers/nextcloud/default.nix index 8b59ae54265d..9c6e3a22122a 100644 --- a/pkgs/servers/nextcloud/default.nix +++ b/pkgs/servers/nextcloud/default.nix @@ -51,8 +51,8 @@ in { }; nextcloud22 = generic { - version = "22.2.0"; - sha256 = "07ryvynws65k42n6ca20nni1vqr90fsrd2dpx2bvh09mwhyblg97"; + version = "22.2.2"; + sha256 = "sha256-lDvn29N19Lhm3P2YIVM/85vr/U07qR+M8TkF/D/GTfA="; }; # tip: get she sha with: # curl 'https://download.nextcloud.com/server/releases/nextcloud-${version}.tar.bz2.sha256' diff --git a/pkgs/servers/openafs/1.8/module.nix b/pkgs/servers/openafs/1.8/module.nix index 4f1404b62820..2543aef37690 100644 --- a/pkgs/servers/openafs/1.8/module.nix +++ b/pkgs/servers/openafs/1.8/module.nix @@ -1,5 +1,5 @@ { lib, stdenv, fetchurl, which, autoconf, automake, flex, bison -, kernel, glibc, perl, libtool_2, libkrb5 }: +, kernel, glibc, perl, libtool_2, libkrb5, fetchpatch }: with (import ./srcs.nix { inherit fetchurl; @@ -18,6 +18,23 @@ in stdenv.mkDerivation { buildInputs = [ libkrb5 ]; + patches = [ + # LINUX 5.14: explicitly set set_page_dirty to default + ((fetchpatch { + url = "https://gerrit.openafs.org/changes/14830/revisions/20b8a37950b3718b85a4a3d21b23469a5176eb6a/patch"; + sha256 = "1mkfwq0pbwvfjspsy2lxhi0f09hljgc6xyn3y97sai0dyivn05jp"; + }).overrideAttrs (o: { + postFetch = "mv $out p; base64 -d p > $out; " + o.postFetch; + })) + # Linux 5.15: Convert osi_Msg macro to a function + ((fetchpatch { + url = "https://gerrit.openafs.org/changes/14831/revisions/6cfa9046229d90c0625687e3fddb7877f21fbcff/patch"; + sha256 = "18rip9a1krxf47fizf3f12ddq55apzb2w3wjj5qs7n3sh2nwks7g"; + }).overrideAttrs (o: { + postFetch = "mv $out p; base64 -d p > $out; " + o.postFetch; + })) + ]; + hardeningDisable = [ "pic" ]; configureFlags = [ diff --git a/pkgs/servers/openafs/1.9/module.nix b/pkgs/servers/openafs/1.9/module.nix index a242d59e2dd5..83fe7ac98a7c 100644 --- a/pkgs/servers/openafs/1.9/module.nix +++ b/pkgs/servers/openafs/1.9/module.nix @@ -58,6 +58,6 @@ in stdenv.mkDerivation { license = licenses.ipl10; platforms = platforms.linux; maintainers = [ maintainers.maggesi maintainers.spacefrogg ]; - broken = versionOlder kernel.version "3.18" || kernel.isHardened; + broken = versionOlder kernel.version "3.18" || kernel.kernelAtLeast "5.15" || kernel.isHardened; }; } diff --git a/pkgs/servers/openvscode-server/default.nix b/pkgs/servers/openvscode-server/default.nix new file mode 100644 index 000000000000..e6ada50152a4 --- /dev/null +++ b/pkgs/servers/openvscode-server/default.nix @@ -0,0 +1,173 @@ +{ lib, stdenv, fetchFromGitHub, makeWrapper, runCommand +, cacert, moreutils, jq, git, pkg-config, yarn, python3 +, esbuild, nodejs-14_x, libsecret, xorg, ripgrep +, AppKit, Cocoa, Security, cctools }: + +let + system = stdenv.hostPlatform.system; + + nodejs = nodejs-14_x; + yarn' = yarn.override { inherit nodejs; }; + defaultYarnOpts = [ "frozen-lockfile" "non-interactive" "no-progress"]; + + vsBuildTarget = { + x86_64-linux = "linux-x64"; + aarch64-linux = "linux-arm64"; + x86_64-darwin = "darwin"; + }.${system} or (throw "Unsupported system ${system}"); + + # replaces esbuild's download script with a binary from nixpkgs + patchEsbuild = path : version : '' + mkdir -p ${path}/node_modules/esbuild/bin + jq "del(.scripts.postinstall)" ${path}/node_modules/esbuild/package.json | sponge ${path}/node_modules/esbuild/package.json + sed -i 's/${version}/${esbuild.version}/g' ${path}/node_modules/esbuild/lib/main.js + ln -s -f ${esbuild}/bin/esbuild ${path}/node_modules/esbuild/bin/esbuild + ''; + +in stdenv.mkDerivation rec { + pname = "openvscode-server"; + version = "1.62.0"; + + src = fetchFromGitHub { + owner = "gitpod-io"; + repo = "openvscode-server"; + rev = "openvscode-server-v${version}"; + sha256 = "0lmka1hgf1703h70s7i2lx07535n2l867kmnc5h89c4vaswy6649"; + }; + + yarnCache = stdenv.mkDerivation { + name = "${pname}-${version}-${system}-yarn-cache"; + inherit src; + nativeBuildInputs = [ cacert yarn git ]; + buildPhase = '' + export HOME=$PWD + + yarn config set yarn-offline-mirror $out + find "$PWD" -name "yarn.lock" -printf "%h\n" | \ + xargs -I {} yarn --cwd {} \ + --frozen-lockfile --ignore-scripts --ignore-platform \ + --ignore-engines --no-progress --non-interactive + ''; + + installPhase = '' + echo yarnCache + ''; + + outputHashMode = "recursive"; + outputHashAlgo = "sha256"; + outputHash = "142m0vkddzv09rbbqw7y7x19q7akkn00dn6az5ppr86k6bmhyk6p"; + }; + + # Extract the Node.js source code which is used to compile packages with + # native bindings + nodeSources = runCommand "node-sources" {} '' + tar --no-same-owner --no-same-permissions -xf ${nodejs.src} + mv node-* $out + ''; + + nativeBuildInputs = [ + nodejs yarn' python3 pkg-config makeWrapper git jq moreutils + ]; + buildInputs = lib.optionals (!stdenv.isDarwin) [ libsecret ] + ++ (with xorg; [ libX11 libxkbfile ]) + ++ lib.optionals stdenv.isDarwin [ + AppKit Cocoa Security cctools + ]; + + patches = [ + # Patch out remote download of nodejs from build script + ./remove-node-download.patch + ]; + + postPatch = '' + export HOME=$PWD + + # remove all built-in extensions, as these are 3rd party extensions that + # get downloaded from vscode marketplace + jq --slurp '.[0] * .[1]' "product.json" <( + cat << EOF + { + "builtInExtensions": [] + } + EOF + ) | sponge product.json + ''; + + configurePhase = '' + # set default yarn opts + ${lib.concatMapStrings (option: '' + yarn --offline config set ${option} + '') defaultYarnOpts} + + # set offline mirror to yarn cache we created in previous steps + yarn --offline config set yarn-offline-mirror "${yarnCache}" + '' + lib.optionalString stdenv.isLinux '' + # set nodedir, so we can build binaries later + npm config set nodedir "${nodeSources}" + ''; + + buildPhase = '' + # install dependencies + yarn --offline --ignore-scripts + + # run yarn install everywhere, skipping postinstall so we can patch esbuild + find . -path "*node_modules" -prune -o \ + -path "./*/*" -name "yarn.lock" -printf "%h\n" | \ + xargs -I {} yarn --cwd {} \ + --frozen-lockfile --offline --ignore-scripts --ignore-engines + + ${patchEsbuild "./build" "0.12.6"} + ${patchEsbuild "./extensions" "0.11.23"} + + # patch shebangs of node_modules to allow binary packages to build + patchShebangs ./remote/node_modules + + # put ripgrep binary into bin so postinstall does not try to download it + find -name vscode-ripgrep -type d \ + -execdir mkdir -p {}/bin \; \ + -execdir ln -s ${ripgrep}/bin/rg {}/bin/rg \; + '' + lib.optionalString stdenv.isDarwin '' + # use prebuilt binary for @parcel/watcher, which requires macOS SDK 10.13+ + # (see issue #101229) + pushd ./remote/node_modules/@parcel/watcher + mkdir -p ./build/Release + mv ./prebuilds/darwin-x64/node.napi.glibc.node ./build/Release/watcher.node + jq "del(.scripts) | .gypfile = false" ./package.json | sponge ./package.json + popd + '' + '' + # rebuild binaries, we use npm here, as yarn does not provide an alternative + # that would not attempt to try to reinstall everything and break our + # patching attempts + npm --prefix ./remote rebuild --build-from-source + + # run postinstall scripts after patching + find . -path "*node_modules" -prune -o \ + -path "./*/*" -name "yarn.lock" -printf "%h\n" | \ + xargs -I {} sh -c 'jq -e ".scripts.postinstall" {}/package.json >/dev/null && yarn --cwd {} postinstall --frozen-lockfile --offline || true' + + # build and minify + yarn --offline gulp vscode-reh-web-${vsBuildTarget}-min + ''; + + installPhase = '' + mkdir -p $out/libexec + + cp -R -T ../vscode-reh-web-${vsBuildTarget} "$out/libexec" + + ln -s ${nodejs}/bin/node $out/libexec + + makeWrapper "$out/libexec/server.sh" "$out/bin/openvscode-server" + ''; + + meta = with lib; { + description = "Run VS Code on a remote machine"; + longDescription = '' + Run upstream VS Code on a remote machine with access through a modern web + browser from any device, anywhere. + ''; + homepage = "https://github.com/gitpod-io/openvscode-server"; + license = licenses.mit; + maintainers = with maintainers; [ dguenther ghuntley ]; + platforms = [ "x86_64-linux" "aarch64-linux" "x86_64-darwin" ]; + }; +} diff --git a/pkgs/servers/openvscode-server/remove-node-download.patch b/pkgs/servers/openvscode-server/remove-node-download.patch new file mode 100644 index 000000000000..9262be5b293d --- /dev/null +++ b/pkgs/servers/openvscode-server/remove-node-download.patch @@ -0,0 +1,27 @@ +--- ./build/gulpfile.reh.js ++++ ./build/gulpfile.reh.js +@@ -277,8 +277,6 @@ + .pipe(util.stripSourceMappingURL()) + .pipe(jsFilter.restore); + +- const nodePath = `.build/node/v${nodeVersion}/${platform}-${platform === 'darwin' ? 'x64' : arch}`; +- const node = gulp.src(`${nodePath}/**`, { base: nodePath, dot: true }); + + let web = []; + if (type === 'reh-web') { +@@ -296,7 +294,6 @@ + license, + sources, + deps, +- node, + ...web + ); + +@@ -376,7 +373,6 @@ + const destinationFolderName = `vscode-${type}${dashed(platform)}${dashed(arch)}`; + + const serverTaskCI = task.define(`vscode-${type}${dashed(platform)}${dashed(arch)}${dashed(minified)}-ci`, task.series( +- gulp.task(`node-${platform}-${platform === 'darwin' ? 'x64' : arch}`), + util.rimraf(path.join(BUILD_ROOT, destinationFolderName)), + packageTask(type, platform, arch, sourceFolderName, destinationFolderName) + )); diff --git a/pkgs/servers/owncast/default.nix b/pkgs/servers/owncast/default.nix index 65fa8a0f22e9..68591f458230 100644 --- a/pkgs/servers/owncast/default.nix +++ b/pkgs/servers/owncast/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "owncast"; - version = "0.0.9"; + version = "0.0.10"; src = fetchFromGitHub { owner = "owncast"; repo = "owncast"; rev = "v${version}"; - sha256 = "sha256-pJb11ifaiamp7P7d/xCwDKfOFufLmDDroUJPnWlTOkI="; + sha256 = "sha256-OcolQ4KnZbSgS1dpphbCML40jlheKAxbac7rjRul6Oc="; }; vendorSha256 = "sha256-NARHYeOVT7sxfL1BdJc/CPCgHNZzjWE7kACJvrEC71Y="; diff --git a/pkgs/servers/pleroma/default.nix b/pkgs/servers/pleroma/default.nix index 21d65b40aace..f8092419215d 100644 --- a/pkgs/servers/pleroma/default.nix +++ b/pkgs/servers/pleroma/default.nix @@ -204,7 +204,7 @@ beamPackages.mixRelease rec { meta = with lib; { description = "ActivityPub microblogging server"; - homepage = https://git.pleroma.social/pleroma/pleroma; + homepage = "https://git.pleroma.social/pleroma/pleroma"; license = licenses.agpl3; maintainers = with maintainers; [ petabyteboy ninjatrappeur yuka ]; platforms = [ "x86_64-linux" "aarch64-linux" ]; diff --git a/pkgs/servers/prowlarr/default.nix b/pkgs/servers/prowlarr/default.nix index 9cfc26925cc6..3daa69de492b 100644 --- a/pkgs/servers/prowlarr/default.nix +++ b/pkgs/servers/prowlarr/default.nix @@ -16,14 +16,14 @@ let }."${stdenv.hostPlatform.system}" or (throw "Unsupported system: ${stdenv.hostPlatform.system}"); hash = { - x64-linux_hash = "sha256-9DoqyotXAUha2TMSgDIot5PD8ABpfZ8gsshS1ypr5SY="; - arm64-linux_hash = "sha256-r22c70OuevRsF8gOHZOkkhlRtoD4nsTHnXF82elQIF8="; - x64-osx_hash = "sha256-6jVM4iSGT7tpagocI/1nuBPVvAegfFqsCfrz2fPKCI4="; + x64-linux_hash = "sha256-S3ktqBapIi6YIjDOIMziCzecS86hR2LIUey3SLNuWgg="; + arm64-linux_hash = "sha256-lxPglw3whyMQ+v7GpKMygxqINDoczKmh7KpGAuzuQwM="; + x64-osx_hash = "sha256-EUg3eC5QwGgCSi9qAPs6s8wenSXEmLvLHUTlvoLWAtc="; }."${arch}-${os}_hash"; in stdenv.mkDerivation rec { pname = "prowlarr"; - version = "0.1.1.978"; + version = "0.1.2.1060"; src = fetchurl { url = "https://github.com/Prowlarr/Prowlarr/releases/download/v${version}/Prowlarr.develop.${version}.${os}-core-${arch}.tar.gz"; diff --git a/pkgs/servers/reproxy/default.nix b/pkgs/servers/reproxy/default.nix index 25fb5268c146..37d76779b2c8 100644 --- a/pkgs/servers/reproxy/default.nix +++ b/pkgs/servers/reproxy/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "reproxy"; - version = "0.8.0"; + version = "0.9.0"; src = fetchFromGitHub { owner = "umputun"; repo = pname; rev = "v${version}"; - hash = "sha256-zwQZr6BbvJ2Ol5pCLkZ49j0j5KWTK0N8BybvTr8PPeg="; + hash = "sha256-z10KfDwIwitiR6ei1xV9//zhH7DLTow1giEYyjh8FIg="; }; postPatch = '' diff --git a/pkgs/servers/roon-server/default.nix b/pkgs/servers/roon-server/default.nix index d97a5df42e19..ffb4bc0c7e82 100644 --- a/pkgs/servers/roon-server/default.nix +++ b/pkgs/servers/roon-server/default.nix @@ -5,14 +5,16 @@ , fetchurl , ffmpeg , freetype +, icu66 +, krb5 , lib , makeWrapper , stdenv -, zlib +, openssl }: stdenv.mkDerivation rec { pname = "roon-server"; - version = "1.8-831"; + version = "1.8-850"; src = let @@ -20,47 +22,66 @@ stdenv.mkDerivation rec { in fetchurl { url = "http://download.roonlabs.com/builds/RoonServer_linuxx64_${urlVersion}.tar.bz2"; - sha256 = "sha256-SeMSC7K6DV7rVr1w/SqMnLvipoWbypS/gJnSZmpfXZk="; + sha256 = "sha256-NSNaL0ERYTSYn9ETjWcQiuI4hY+w/lWVOz3n9lt6O+4="; }; buildInputs = [ alsa-lib - alsa-utils - cifs-utils - ffmpeg freetype - zlib + krb5 + stdenv.cc.cc.lib ]; nativeBuildInputs = [ autoPatchelfHook makeWrapper ]; - installPhase = '' - runHook preInstall - mkdir -p $out - mv * $out - runHook postInstall - ''; - - postFixup = + installPhase = let - linkFix = bin: '' - sed -i '/ulimit/d' ${bin} - sed -i '/ln -sf/d' ${bin} - ln -sf $out/RoonMono/bin/mono-sgen $out/RoonMono/bin/${builtins.baseNameOf bin} - ''; - wrapFix = bin: '' - wrapProgram ${bin} --prefix PATH : ${lib.makeBinPath [ alsa-utils cifs-utils ffmpeg ]} + # NB: While this might seem like odd behavior, it's what Roon expects. The + # tarball distribution provides scripts that do a bunch of nonsense on top + # of what wrapBin is doing here, so consider it the lesser of two evils. + # I didn't bother checking whether the symlinks are really necessary, but + # I wouldn't put it past Roon to have custom code based on the binary + # name, so we're playing it safe. + wrapBin = binPath: '' + ( + binDir="$(dirname "${binPath}")" + binName="$(basename "${binPath}")" + dotnetDir="$out/RoonDotnet" + + ln -sf "$dotnetDir/dotnet" "$dotnetDir/$binName" + rm "${binPath}" + makeWrapper "$dotnetDir/$binName" "${binPath}" \ + --add-flags "$binDir/$binName.dll" \ + --argv0 "$binName" \ + --prefix LD_LIBRARY_PATH : "${lib.makeLibraryPath [ icu66 openssl ]}" \ + --prefix PATH : "$dotnetDir" \ + --prefix PATH : "${lib.makeBinPath [ alsa-utils cifs-utils ffmpeg ]}" \ + --run "cd $binDir" \ + --set DOTNET_ROOT "$dotnetDir" + ) ''; in '' - ${linkFix "$out/Appliance/RAATServer"} - ${linkFix "$out/Appliance/RoonAppliance"} - ${linkFix "$out/Server/RoonServer"} + runHook preInstall + mkdir -p $out + mv * $out - sed -i '/which avconv/c\ WHICH_AVCONV=1' $out/check.sh - sed -i '/^check_ulimit/d' $out/check.sh - ${wrapFix "$out/check.sh"} - ${wrapFix "$out/start.sh"} + rm $out/check.sh + rm $out/start.sh + rm $out/VERSION + + ${wrapBin "$out/Appliance/RAATServer"} + ${wrapBin "$out/Appliance/RoonAppliance"} + ${wrapBin "$out/Server/RoonServer"} + + mkdir -p $out/bin + makeWrapper "$out/Server/RoonServer" "$out/bin/RoonServer" --run "cd $out" + + # This is unused and depends on an ancient version of lttng-ust, so we + # just patch it out + patchelf --remove-needed liblttng-ust.so.0 $out/RoonDotnet/shared/Microsoft.NETCore.App/5.0.0/libcoreclrtraceptprovider.so + + runHook postInstall ''; meta = with lib; { diff --git a/pkgs/servers/routinator/default.nix b/pkgs/servers/routinator/default.nix index aff0499b98bd..edff95d2e11b 100644 --- a/pkgs/servers/routinator/default.nix +++ b/pkgs/servers/routinator/default.nix @@ -7,16 +7,16 @@ rustPlatform.buildRustPackage rec { pname = "routinator"; - version = "0.10.1"; + version = "0.10.2"; src = fetchFromGitHub { owner = "NLnetLabs"; repo = pname; rev = "v${version}"; - sha256 = "sha256-ThgTGtTZ0LGm9nHJoy0KhnBFWNvKRjk7hoNTVVTeL/Y="; + sha256 = "0a2iwpmljkha6qlbw0373wph7pxz05qym5712vzbszw0z42f82l2"; }; - cargoSha256 = "sha256-mcx+qUtTUxeYP0PeJp1eOQwsdS6PPUx/m7TfAyqFiIM="; + cargoSha256 = "0l3fhwgrdvjrlmiqdy90sfd8kb2s7y0lbfswlrr560ly0bi1lfbx"; buildInputs = lib.optionals stdenv.isDarwin [ Security ]; diff --git a/pkgs/servers/samba/4.x.nix b/pkgs/servers/samba/4.x.nix index 8248becd3e42..88defab93025 100644 --- a/pkgs/servers/samba/4.x.nix +++ b/pkgs/servers/samba/4.x.nix @@ -35,7 +35,7 @@ , enableMDNS ? false, avahi , enableDomainController ? false, gpgme, lmdb , enableRegedit ? true, ncurses -, enableCephFS ? false, libceph +, enableCephFS ? false, ceph , enableGlusterFS ? false, glusterfs, libuuid , enableAcl ? (!stdenv.isDarwin), acl , enablePam ? (!stdenv.isDarwin), pam @@ -101,7 +101,7 @@ stdenv.mkDerivation rec { ++ optional enableMDNS avahi ++ optionals enableDomainController [ gpgme lmdb python3Packages.dnspython ] ++ optional enableRegedit ncurses - ++ optional (enableCephFS && stdenv.isLinux) libceph + ++ optional (enableCephFS && stdenv.isLinux) (lib.getDev ceph) ++ optionals (enableGlusterFS && stdenv.isLinux) [ glusterfs libuuid ] ++ optional enableAcl acl ++ optional enablePam pam; @@ -159,7 +159,7 @@ stdenv.mkDerivation rec { # Use find -type f -executable -exec echo {} \; -exec sh -c 'ldd {} | grep "not found"' \; # Looks like a bug in installer scripts. postFixup = '' - export SAMBA_LIBS="$(find $out -type f -name \*.so -exec dirname {} \; | sort | uniq)" + export SAMBA_LIBS="$(find $out -type f -regex '.*\.so\(\..*\)?' -exec dirname {} \; | sort | uniq)" read -r -d "" SCRIPT << EOF || true [ -z "\$SAMBA_LIBS" ] && exit 1; BIN='{}'; @@ -168,7 +168,7 @@ stdenv.mkDerivation rec { patchelf --set-rpath "\$ALL_LIBS" "\$BIN" 2>/dev/null || exit $?; patchelf --shrink-rpath "\$BIN"; EOF - find $out -type f -name \*.so -exec $SHELL -c "$SCRIPT" \; + find $out -type f -regex '.*\.so\(\..*\)?' -exec $SHELL -c "$SCRIPT" \; # Samba does its own shebang patching, but uses build Python find "$out/bin" -type f -executable -exec \ diff --git a/pkgs/servers/search/elasticsearch/7.x.nix b/pkgs/servers/search/elasticsearch/7.x.nix index de194bcc7d29..c254b733837b 100644 --- a/pkgs/servers/search/elasticsearch/7.x.nix +++ b/pkgs/servers/search/elasticsearch/7.x.nix @@ -1,5 +1,4 @@ { elk7Version -, enableUnfree ? true , lib , stdenv , fetchurl @@ -18,19 +17,15 @@ let arch = elemAt info 0; plat = elemAt info 1; shas = - if enableUnfree - then { - x86_64-linux = "sha256-O3rjtvXyJI+kRBqiz2U2OMkCIQj4E+AIHaE8N4o14R4="; - x86_64-darwin = "sha256-AwuY2yMxf+v7U5/KD3Cf+Hv6ijjySEyj6pzF3RCsg24="; - } - else { - x86_64-linux = "sha256-cJrdkFIFgAI6wfQh34Z8yFuLrOCOKzgOsWZhU3S/3NQ="; - x86_64-darwin = "sha256-OhMVOdXei9D9cH+O5tBhdKvZ05TsImjMqUUsucRyWMo="; + { + x86_64-linux = "1ld7656b37l67vi4pyv0il865b168niqnbd4hzbvdnwrm35prp10"; + x86_64-darwin = "11b180y11xw5q01l7aw6lyn15lp9ks8xmakjg1j7gp3z6c90hpn3"; + aarch64-linux = "0s4ph79x17f90jk31wjwk259dk9dmhnmnkxdcn77m191wvf6m3wy"; }; in -stdenv.mkDerivation (rec { +stdenv.mkDerivation rec { + pname = "elasticsearch"; version = elk7Version; - pname = "elasticsearch${optionalString (!enableUnfree) "-oss"}"; src = fetchurl { url = "https://artifacts.elastic.co/downloads/elasticsearch/${pname}-${version}-${plat}-${arch}.tar.gz"; @@ -49,9 +44,11 @@ stdenv.mkDerivation (rec { "ES_CLASSPATH=\"\$ES_CLASSPATH:$out/\$additional_classpath_directory/*\"" ''; - nativeBuildInputs = [ makeWrapper ]; - buildInputs = [ jre_headless util-linux ] - ++ optional enableUnfree zlib; + nativeBuildInputs = [ autoPatchelfHook makeWrapper ]; + + buildInputs = [ jre_headless util-linux zlib ]; + + runtimeDependencies = [ zlib ]; installPhase = '' mkdir -p $out @@ -69,22 +66,12 @@ stdenv.mkDerivation (rec { wrapProgram $out/bin/elasticsearch-plugin --set JAVA_HOME "${jre_headless}" ''; - passthru = { inherit enableUnfree; }; + passthru = { enableUnfree = true; }; meta = { description = "Open Source, Distributed, RESTful Search Engine"; - license = if enableUnfree then licenses.elastic else licenses.asl20; + license = licenses.elastic; platforms = platforms.unix; maintainers = with maintainers; [ apeschar basvandijk ]; }; -} // optionalAttrs enableUnfree { - dontPatchELF = true; - nativeBuildInputs = [ makeWrapper autoPatchelfHook ]; - runtimeDependencies = [ zlib ]; - postFixup = '' - for exe in $(find $out/modules/x-pack-ml/platform/linux-x86_64/bin -executable -type f); do - echo "patching $exe..." - patchelf --set-interpreter "$(cat $NIX_CC/nix-support/dynamic-linker)" "$exe" - done - ''; -}) +} diff --git a/pkgs/servers/search/elasticsearch/plugins.nix b/pkgs/servers/search/elasticsearch/plugins.nix index 39af6976bf9b..f71d7b9cc76c 100644 --- a/pkgs/servers/search/elasticsearch/plugins.nix +++ b/pkgs/servers/search/elasticsearch/plugins.nix @@ -4,13 +4,14 @@ let esVersion = elasticsearch.version; esPlugin = - a@{ pluginName - , installPhase ? '' + a@{ + pluginName, + installPhase ? '' mkdir -p $out/config mkdir -p $out/plugins - ln -s ${elasticsearch}/lib $out/lib + ln -s ${elasticsearch}/lib ${elasticsearch}/modules $out ES_HOME=$out ${elasticsearch}/bin/elasticsearch-plugin install --batch -v file://$src - rm $out/lib + rm $out/lib $out/modules '' , ... }: @@ -37,7 +38,7 @@ in src = fetchurl { url = "https://artifacts.elastic.co/downloads/elasticsearch-plugins/${pluginName}/${pluginName}-${version}.zip"; sha256 = - if version == "7.10.2" then "sha256-HXNJy8WPExPeh5afjdLEFg+0WX0LYI/kvvaLGVUke5E=" + if version == "7.11.1" then "0mi6fmnjbqypa4n1w34dvlmyq793pz4wf1r5srcs7i84kkiddysy" else if version == "6.8.3" then "0vbaqyj0lfy3ijl1c9h92b0nh605h5mjs57bk2zhycdvbw5sx2lv" else throw "unsupported version ${version} for plugin ${pluginName}"; }; @@ -54,7 +55,7 @@ in src = fetchurl { url = "https://github.com/vhyza/elasticsearch-${pluginName}/releases/download/v${version}/elasticsearch-${pluginName}-${version}-plugin.zip"; sha256 = - if version == "7.10.2" then "sha256-mW4YNZ20qatyfHCDAmod/gVmkPYh15NrsYPgiBy1/T8=" + if version == "7.11.1" then "0r2k2ndgqiqh27lch8dbay1m09f00h5kjcan87chcvyf623l40a3" else if version == "6.8.3" then "12bshvp01pp2lgwd0cn9l58axg8gdimsh4g9wfllxi1bdpv4cy53" else throw "unsupported version ${version} for plugin ${pluginName}"; }; @@ -71,7 +72,7 @@ in src = fetchurl { url = "https://artifacts.elastic.co/downloads/elasticsearch-plugins/${pluginName}/${pluginName}-${version}.zip"; sha256 = - if version == "7.10.2" then "sha256-PjA/pwoulkD2d6sHKqzcYxQpb1aS68/l047z5JTcV3Y=" + if version == "7.11.1" then "10ln81zyf04qi9wv10mck8iz0xwfvwp4ni0hl1gkgvh44lf1n855" else if version == "6.8.3" then "0ggdhf7w50bxsffmcznrjy14b578fps0f8arg3v54qvj94v9jc37" else throw "unsupported version ${version} for plugin ${pluginName}"; }; @@ -88,7 +89,7 @@ in src = fetchurl { url = "https://artifacts.elastic.co/downloads/elasticsearch-plugins/${pluginName}/${pluginName}-${version}.zip"; sha256 = - if version == "7.10.2" then "sha256-yvxSkVyZDWeu7rcxxq1+IVsljZQKgWEURiXY9qycK1s=" + if version == "7.11.1" then "09grfvqjmm2rznc48z84awh54afh81qa16amfqw3amsb8dr6czm6" else if version == "6.8.3" then "0pmffz761dqjpvmkl7i7xsyw1iyyspqpddxp89rjsznfc9pak5im" else throw "unsupported version ${version} for plugin ${pluginName}"; }; @@ -105,7 +106,7 @@ in src = fetchurl { url = "https://artifacts.elastic.co/downloads/elasticsearch-plugins/${pluginName}/${pluginName}-${version}.zip"; sha256 = - if version == "7.10.2" then "sha256-yOMiYJ2c/mcLDcTA99YrpQBiEBAa/mLtTqJlqTJ5tBc=" + if version == "7.11.1" then "0imkf3w2fmspb78vkf9k6kqx1crm4f82qgnbk1qa7gbsa2j47hbs" else if version == "6.8.3" then "0kfr4i2rcwinjn31xrc2piicasjanaqcgnbif9xc7lnak2nnzmll" else throw "unsupported version ${version} for plugin ${pluginName}"; }; @@ -122,7 +123,7 @@ in src = fetchurl { url = "https://artifacts.elastic.co/downloads/elasticsearch-plugins/${pluginName}/${pluginName}-${esVersion}.zip"; sha256 = - if version == "7.10.2" then "sha256-fN2RQsY9OACE71pIw87XVJo4c3sUu/6gf/6wUt7ZNIE=" + if version == "7.11.1" then "0ahyb1plgwvq22id2kcx9g076ybb3kvybwakgcvsdjjdyi4cwgjs" else if version == "6.8.3" then "1mm6hj2m1db68n81rzsvlw6nisflr5ikzk5zv9nmk0z641n5vh1x" else throw "unsupported version ${version} for plugin ${pluginName}"; }; @@ -139,7 +140,7 @@ in src = fetchurl { url = "https://artifacts.elastic.co/downloads/elasticsearch-plugins/${pluginName}/${pluginName}-${esVersion}.zip"; sha256 = - if version == "7.10.2" then "sha256-JdWt5LzSbs0MIEuLJIE1ceTnNeTYI5Jt2N0Xj7OBO6g=" + if version == "7.11.1" then "0i98b905k1zwm3y9pfhr40v2fm5qdsp3icygibhxf7drffygk4l7" else if version == "6.8.3" then "1s2klpvnhpkrk53p64zbga3b66czi7h1a13f58kfn2cn0zfavnbk" else throw "unsupported version ${version} for plugin ${pluginName}"; }; @@ -150,30 +151,31 @@ in }; }; - search-guard = - let - majorVersion = lib.head (builtins.splitVersion esVersion); - in - esPlugin rec { - pluginName = "search-guard"; - version = - # https://docs.search-guard.com/latest/search-guard-versions - if esVersion == "7.10.2" then "7.10.1-49.3.0" - else if esVersion == "6.8.3" then "${esVersion}-25.5" - else throw "unsupported version ${esVersion} for plugin ${pluginName}"; - src = fetchurl { - url = - if version == "7.10.1-49.3.0" then "https://maven.search-guard.com/search-guard-suite-release/com/floragunn/search-guard-suite-plugin/${version}/search-guard-suite-plugin-${version}.zip" - else "mirror://maven/com/floragunn/${pluginName}-${majorVersion}/${version}/${pluginName}-${majorVersion}-${version}.zip"; - sha256 = - if version == "7.10.1-49.3.0" then "sha256-vKH2+c+7WlncgljrvYH9lAqQTKzg9l0ABZ23Q/xdoK4=" - else if version == "6.8.3-25.5" then "0a7ys9qinc0fjyka03cx9rv0pm7wnvslk234zv5vrphkrj52s1cb" - else throw "unsupported version ${version} for plugin ${pluginName}"; - }; - meta = with lib; { - homepage = "https://search-guard.com"; - description = "Elasticsearch plugin that offers encryption, authentication, and authorisation. "; - license = licenses.asl20; - }; + search-guard = let + majorVersion = lib.head (builtins.splitVersion esVersion); + in esPlugin rec { + pluginName = "search-guard"; + version = + # https://docs.search-guard.com/latest/search-guard-versions + if esVersion == "7.11.1" then "${esVersion}-50.0.0" + else if esVersion == "6.8.3" then "${esVersion}-25.5" + else throw "unsupported version ${esVersion} for plugin ${pluginName}"; + src = + if esVersion == "7.11.1" then + fetchurl { + url = "https://maven.search-guard.com/search-guard-suite-release/com/floragunn/search-guard-suite-plugin/${version}/search-guard-suite-plugin-${version}.zip"; + sha256 = "1lippygiy0xcxxlakylhvj3bj2i681k6jcfjsprkfk7hlaqsqxkm"; + } + else if esVersion == "6.8.3" then + fetchurl { + url = "mirror://maven/com/floragunn/${pluginName}-${majorVersion}/${version}/${pluginName}-${majorVersion}-${version}.zip"; + sha256 = "0a7ys9qinc0fjyka03cx9rv0pm7wnvslk234zv5vrphkrj52s1cb"; + } + else throw "unsupported version ${version} for plugin ${pluginName}"; + meta = with lib; { + homepage = "https://search-guard.com"; + description = "Elasticsearch plugin that offers encryption, authentication, and authorisation. "; + license = licenses.asl20; }; + }; } diff --git a/pkgs/servers/search/meilisearch/default.nix b/pkgs/servers/search/meilisearch/default.nix index 03af810cbed0..9165a4713d4e 100644 --- a/pkgs/servers/search/meilisearch/default.nix +++ b/pkgs/servers/search/meilisearch/default.nix @@ -27,7 +27,7 @@ rustPlatform.buildRustPackage { buildInputs = lib.optionals stdenv.isDarwin [ Security DiskArbitration Foundation ]; meta = with lib; { description = "Powerful, fast, and an easy to use search engine "; - homepage = https://docs.meilisearch.com/; + homepage = "https://docs.meilisearch.com/"; license = licenses.mit; maintainers = with maintainers; [ happysalada ]; platforms = [ "x86_64-linux" "x86_64-darwin" ]; diff --git a/pkgs/servers/sql/postgresql/default.nix b/pkgs/servers/sql/postgresql/default.nix index 0d6e5d9afe7c..fafd5581e5a2 100644 --- a/pkgs/servers/sql/postgresql/default.nix +++ b/pkgs/servers/sql/postgresql/default.nix @@ -3,7 +3,7 @@ let generic = # dependencies { stdenv, lib, fetchurl, makeWrapper - , glibc, zlib, readline, openssl, icu, systemd, libossp_uuid + , glibc, zlib, readline, openssl, icu, lz4, systemd, libossp_uuid , pkg-config, libxml2, tzdata # This is important to obtain a version of `libpq` that does not depend on systemd. @@ -23,6 +23,7 @@ let let atLeast = lib.versionAtLeast version; icuEnabled = atLeast "10"; + lz4Enabled = atLeast "14"; in stdenv.mkDerivation rec { pname = "postgresql"; @@ -41,6 +42,7 @@ let buildInputs = [ zlib readline openssl libxml2 ] ++ lib.optionals icuEnabled [ icu ] + ++ lib.optionals lz4Enabled [ lz4 ] ++ lib.optionals enableSystemd [ systemd ] ++ lib.optionals gssSupport [ libkrb5 ] ++ lib.optionals (!stdenv.isDarwin) [ libossp_uuid ]; @@ -68,6 +70,7 @@ let (lib.optionalString enableSystemd "--with-systemd") (if stdenv.isDarwin then "--with-uuid=e2fs" else "--with-ossp-uuid") ] ++ lib.optionals icuEnabled [ "--with-icu" ] + ++ lib.optionals lz4Enabled [ "--with-lz4" ] ++ lib.optionals gssSupport [ "--with-gssapi" ]; patches = @@ -159,7 +162,7 @@ let homepage = "https://www.postgresql.org"; description = "A powerful, open source object-relational database system"; license = licenses.postgresql; - maintainers = with maintainers; [ thoughtpolice danbst globin marsam ]; + maintainers = with maintainers; [ thoughtpolice danbst globin marsam ivan ]; platforms = platforms.unix; knownVulnerabilities = optional (!atLeast "9.4") "PostgreSQL versions older than 9.4 are not maintained anymore!"; diff --git a/pkgs/servers/tt-rss/plugin-ff-instagram/default.nix b/pkgs/servers/tt-rss/plugin-ff-instagram/default.nix index 1accac5bf6f8..96dfaa7f29b7 100644 --- a/pkgs/servers/tt-rss/plugin-ff-instagram/default.nix +++ b/pkgs/servers/tt-rss/plugin-ff-instagram/default.nix @@ -2,7 +2,7 @@ stdenv.mkDerivation { pname = "tt-rss-plugin-ff-instagram"; - version = "git-2019-01-10"; # No release, see https://github.com/wltb/ff_instagram/issues/6 + version = "unstable-2019-01-10"; # No release, see https://github.com/wltb/ff_instagram/issues/6 src = fetchFromGitHub { owner = "wltb"; diff --git a/pkgs/servers/unpfs/default.nix b/pkgs/servers/unpfs/default.nix index f1d1e52b6c6e..106d52479bc5 100644 --- a/pkgs/servers/unpfs/default.nix +++ b/pkgs/servers/unpfs/default.nix @@ -2,18 +2,18 @@ rustPlatform.buildRustPackage rec { pname = "unpfs"; - version = "0.0.2019-05-17"; + version = "unstable-2021-04-23"; src = fetchFromGitHub { owner = "pfpacket"; repo = "rust-9p"; - rev = "01cf9c60bff0f35567d876db7be7fb86032b44eb"; - sha256 = "0mhmr1912z5nyfpcvhnlgb3v67a5n7i2n9l5abi05sfqffqssi79"; + rev = "6d9b62aa182c5764e00b96f93109feb605d9eac9"; + sha256 = "sha256-zyDkUb+bFsVnxAE4UODbnRtDim7gqUNuY22vuxMsLZM="; }; sourceRoot = "source/example/unpfs"; - cargoSha256 = "1vdk99qz23lkh5z03qjjs3d6p2vdmxrmd2km9im94gzgcyb2fvjs"; + cargoSha256 = "sha256-v8hbxKuxux0oYglEIK5dM9q0oBQzjyYDP1JB1cYR/T0="; RUSTC_BOOTSTRAP = 1; diff --git a/pkgs/servers/web-apps/bookstack/php-packages.nix b/pkgs/servers/web-apps/bookstack/php-packages.nix index 2841ff2a5f9d..a17c84f5b5e5 100644 --- a/pkgs/servers/web-apps/bookstack/php-packages.nix +++ b/pkgs/servers/web-apps/bookstack/php-packages.nix @@ -7,7 +7,7 @@ let src = composerEnv.buildZipPackage { name = "aws-aws-crt-php-3942776a8c99209908ee0b287746263725685732"; src = fetchurl { - url = https://api.github.com/repos/awslabs/aws-crt-php/zipball/3942776a8c99209908ee0b287746263725685732; + url = "https://api.github.com/repos/awslabs/aws-crt-php/zipball/3942776a8c99209908ee0b287746263725685732"; sha256 = "0g4vjln6s1419ydljn5m64kzid0b7cplbc0nwn3y4cj72408fyiz"; }; }; @@ -17,7 +17,7 @@ let src = composerEnv.buildZipPackage { name = "aws-aws-sdk-php-fda176884d2952cffc7e67209470bff49609339c"; src = fetchurl { - url = https://api.github.com/repos/aws/aws-sdk-php/zipball/fda176884d2952cffc7e67209470bff49609339c; + url = "https://api.github.com/repos/aws/aws-sdk-php/zipball/fda176884d2952cffc7e67209470bff49609339c"; sha256 = "07cjzhbw4qv7jvi7lly5zg15dcvpgd1py604pas68al7k1lg4343"; }; }; @@ -27,7 +27,7 @@ let src = composerEnv.buildZipPackage { name = "bacon-bacon-qr-code-f73543ac4e1def05f1a70bcd1525c8a157a1ad09"; src = fetchurl { - url = https://api.github.com/repos/Bacon/BaconQrCode/zipball/f73543ac4e1def05f1a70bcd1525c8a157a1ad09; + url = "https://api.github.com/repos/Bacon/BaconQrCode/zipball/f73543ac4e1def05f1a70bcd1525c8a157a1ad09"; sha256 = "1df22bfrc8q62qz8brrs8p2rmmv5gsaxdyjrd2ln6d6j7i4jkjpk"; }; }; @@ -37,7 +37,7 @@ let src = composerEnv.buildZipPackage { name = "barryvdh-laravel-dompdf-5b99e1f94157d74e450f4c97e8444fcaffa2144b"; src = fetchurl { - url = https://api.github.com/repos/barryvdh/laravel-dompdf/zipball/5b99e1f94157d74e450f4c97e8444fcaffa2144b; + url = "https://api.github.com/repos/barryvdh/laravel-dompdf/zipball/5b99e1f94157d74e450f4c97e8444fcaffa2144b"; sha256 = "1r82fzrnjrjy5jgpyc071miiw1rwhwys9ccj81gs3yydq9hi4crw"; }; }; @@ -47,7 +47,7 @@ let src = composerEnv.buildZipPackage { name = "barryvdh-laravel-snappy-1903ab84171072b6bff8d98eb58d38b2c9aaf645"; src = fetchurl { - url = https://api.github.com/repos/barryvdh/laravel-snappy/zipball/1903ab84171072b6bff8d98eb58d38b2c9aaf645; + url = "https://api.github.com/repos/barryvdh/laravel-snappy/zipball/1903ab84171072b6bff8d98eb58d38b2c9aaf645"; sha256 = "1awr5kwj482qsh5wpg0q44fjqi7a9q26ghcc9wp1n9zm97y0rx7a"; }; }; @@ -57,7 +57,7 @@ let src = composerEnv.buildZipPackage { name = "dasprid-enum-5abf82f213618696dda8e3bf6f64dd042d8542b2"; src = fetchurl { - url = https://api.github.com/repos/DASPRiD/Enum/zipball/5abf82f213618696dda8e3bf6f64dd042d8542b2; + url = "https://api.github.com/repos/DASPRiD/Enum/zipball/5abf82f213618696dda8e3bf6f64dd042d8542b2"; sha256 = "0rs7i1xiwhssy88s7bwnp5ri5fi2xy3fl7pw6l5k27xf2f1hv7q6"; }; }; @@ -67,7 +67,7 @@ let src = composerEnv.buildZipPackage { name = "doctrine-cache-331b4d5dbaeab3827976273e9356b3b453c300ce"; src = fetchurl { - url = https://api.github.com/repos/doctrine/cache/zipball/331b4d5dbaeab3827976273e9356b3b453c300ce; + url = "https://api.github.com/repos/doctrine/cache/zipball/331b4d5dbaeab3827976273e9356b3b453c300ce"; sha256 = "1ksr3460a5dpqgq5kgy2l7kdz7fairpvmip8nwaz9y833r5hnnyz"; }; }; @@ -77,7 +77,7 @@ let src = composerEnv.buildZipPackage { name = "doctrine-dbal-2411a55a2a628e6d8dd598388ab13474802c7b6e"; src = fetchurl { - url = https://api.github.com/repos/doctrine/dbal/zipball/2411a55a2a628e6d8dd598388ab13474802c7b6e; + url = "https://api.github.com/repos/doctrine/dbal/zipball/2411a55a2a628e6d8dd598388ab13474802c7b6e"; sha256 = "19vyv64ikbzk0pm9nn67a2kidhfvfcm9s5d91h0hk6kbq85f292v"; }; }; @@ -87,7 +87,7 @@ let src = composerEnv.buildZipPackage { name = "doctrine-deprecations-9504165960a1f83cc1480e2be1dd0a0478561314"; src = fetchurl { - url = https://api.github.com/repos/doctrine/deprecations/zipball/9504165960a1f83cc1480e2be1dd0a0478561314; + url = "https://api.github.com/repos/doctrine/deprecations/zipball/9504165960a1f83cc1480e2be1dd0a0478561314"; sha256 = "04kpbzk5iw86imspkg7dgs54xx877k9b5q0dfg2h119mlfkvxil6"; }; }; @@ -97,7 +97,7 @@ let src = composerEnv.buildZipPackage { name = "doctrine-event-manager-41370af6a30faa9dc0368c4a6814d596e81aba7f"; src = fetchurl { - url = https://api.github.com/repos/doctrine/event-manager/zipball/41370af6a30faa9dc0368c4a6814d596e81aba7f; + url = "https://api.github.com/repos/doctrine/event-manager/zipball/41370af6a30faa9dc0368c4a6814d596e81aba7f"; sha256 = "0pn2aiwl4fvv6fcwar9alng2yrqy8bzc58n4bkp6y2jnpw5gp4m8"; }; }; @@ -107,7 +107,7 @@ let src = composerEnv.buildZipPackage { name = "doctrine-inflector-8b7ff3e4b7de6b2c84da85637b59fd2880ecaa89"; src = fetchurl { - url = https://api.github.com/repos/doctrine/inflector/zipball/8b7ff3e4b7de6b2c84da85637b59fd2880ecaa89; + url = "https://api.github.com/repos/doctrine/inflector/zipball/8b7ff3e4b7de6b2c84da85637b59fd2880ecaa89"; sha256 = "1l83jbj4k59m1agi041gzx1rxix1wzxw9mvnivmg1hqr158149n7"; }; }; @@ -117,7 +117,7 @@ let src = composerEnv.buildZipPackage { name = "doctrine-lexer-e864bbf5904cb8f5bb334f99209b48018522f042"; src = fetchurl { - url = https://api.github.com/repos/doctrine/lexer/zipball/e864bbf5904cb8f5bb334f99209b48018522f042; + url = "https://api.github.com/repos/doctrine/lexer/zipball/e864bbf5904cb8f5bb334f99209b48018522f042"; sha256 = "11lg9fcy0crb8inklajhx3kyffdbx7xzdj8kwl21xsgq9nm9iwvv"; }; }; @@ -127,7 +127,7 @@ let src = composerEnv.buildZipPackage { name = "dompdf-dompdf-8768448244967a46d6e67b891d30878e0e15d25c"; src = fetchurl { - url = https://api.github.com/repos/dompdf/dompdf/zipball/8768448244967a46d6e67b891d30878e0e15d25c; + url = "https://api.github.com/repos/dompdf/dompdf/zipball/8768448244967a46d6e67b891d30878e0e15d25c"; sha256 = "0mgsry4mq5bx6b74h3akay1bp03rnsl8ppcjxjkfjlq4svq7m5yf"; }; }; @@ -137,7 +137,7 @@ let src = composerEnv.buildZipPackage { name = "dragonmantank-cron-expression-65b2d8ee1f10915efb3b55597da3404f096acba2"; src = fetchurl { - url = https://api.github.com/repos/dragonmantank/cron-expression/zipball/65b2d8ee1f10915efb3b55597da3404f096acba2; + url = "https://api.github.com/repos/dragonmantank/cron-expression/zipball/65b2d8ee1f10915efb3b55597da3404f096acba2"; sha256 = "07yqbhf6n4d818gvla60mgg23gichwiafd5ypd70w4b4dlbcxcpl"; }; }; @@ -147,7 +147,7 @@ let src = composerEnv.buildZipPackage { name = "egulias-email-validator-0dbf5d78455d4d6a41d186da50adc1122ec066f4"; src = fetchurl { - url = https://api.github.com/repos/egulias/EmailValidator/zipball/0dbf5d78455d4d6a41d186da50adc1122ec066f4; + url = "https://api.github.com/repos/egulias/EmailValidator/zipball/0dbf5d78455d4d6a41d186da50adc1122ec066f4"; sha256 = "00kwb8rhk1fq3a1i152xniipk3y907q1v5r3szqbkq5rz82dwbck"; }; }; @@ -157,7 +157,7 @@ let src = composerEnv.buildZipPackage { name = "fideloper-proxy-c073b2bd04d1c90e04dc1b787662b558dd65ade0"; src = fetchurl { - url = https://api.github.com/repos/fideloper/TrustedProxy/zipball/c073b2bd04d1c90e04dc1b787662b558dd65ade0; + url = "https://api.github.com/repos/fideloper/TrustedProxy/zipball/c073b2bd04d1c90e04dc1b787662b558dd65ade0"; sha256 = "05jzgjj4fy5p1smqj41b5qxj42zn0mnczvsaacni4fmq174mz4gy"; }; }; @@ -167,7 +167,7 @@ let src = composerEnv.buildZipPackage { name = "filp-whoops-f056f1fe935d9ed86e698905a957334029899895"; src = fetchurl { - url = https://api.github.com/repos/filp/whoops/zipball/f056f1fe935d9ed86e698905a957334029899895; + url = "https://api.github.com/repos/filp/whoops/zipball/f056f1fe935d9ed86e698905a957334029899895"; sha256 = "1qqznxsrlvjlnxlnr786a39igvq3pslxrvm5ks1v09ni88w44g7g"; }; }; @@ -177,7 +177,7 @@ let src = composerEnv.buildZipPackage { name = "guzzlehttp-guzzle-868b3571a039f0ebc11ac8f344f4080babe2cb94"; src = fetchurl { - url = https://api.github.com/repos/guzzle/guzzle/zipball/868b3571a039f0ebc11ac8f344f4080babe2cb94; + url = "https://api.github.com/repos/guzzle/guzzle/zipball/868b3571a039f0ebc11ac8f344f4080babe2cb94"; sha256 = "1n8kng76v4gb51z1qq7wx63pwlyiz3pa44shfla4mcxl2js0r6r0"; }; }; @@ -187,7 +187,7 @@ let src = composerEnv.buildZipPackage { name = "guzzlehttp-promises-fe752aedc9fd8fcca3fe7ad05d419d32998a06da"; src = fetchurl { - url = https://api.github.com/repos/guzzle/promises/zipball/fe752aedc9fd8fcca3fe7ad05d419d32998a06da; + url = "https://api.github.com/repos/guzzle/promises/zipball/fe752aedc9fd8fcca3fe7ad05d419d32998a06da"; sha256 = "09ivi77y49bpc2sy3xhvgq22rfh2fhv921mn8402dv0a8bdprf56"; }; }; @@ -197,7 +197,7 @@ let src = composerEnv.buildZipPackage { name = "guzzlehttp-psr7-089edd38f5b8abba6cb01567c2a8aaa47cec4c72"; src = fetchurl { - url = https://api.github.com/repos/guzzle/psr7/zipball/089edd38f5b8abba6cb01567c2a8aaa47cec4c72; + url = "https://api.github.com/repos/guzzle/psr7/zipball/089edd38f5b8abba6cb01567c2a8aaa47cec4c72"; sha256 = "1k29gax82rf82sbw2cbcp4qn3s3096csvmw9848l94q6ryc4j2rb"; }; }; @@ -207,7 +207,7 @@ let src = composerEnv.buildZipPackage { name = "intervention-image-9a8cc99d30415ec0b3f7649e1647d03a55698545"; src = fetchurl { - url = https://api.github.com/repos/Intervention/image/zipball/9a8cc99d30415ec0b3f7649e1647d03a55698545; + url = "https://api.github.com/repos/Intervention/image/zipball/9a8cc99d30415ec0b3f7649e1647d03a55698545"; sha256 = "1fvfhxr8jyh6jjg3imacgvddgn222g822fq5p9yz8lqlw2ymcfnz"; }; }; @@ -217,7 +217,7 @@ let src = composerEnv.buildZipPackage { name = "knplabs-knp-snappy-349c2e872bbeb15dff825a17dd92ea9c6ae4120e"; src = fetchurl { - url = https://api.github.com/repos/KnpLabs/snappy/zipball/349c2e872bbeb15dff825a17dd92ea9c6ae4120e; + url = "https://api.github.com/repos/KnpLabs/snappy/zipball/349c2e872bbeb15dff825a17dd92ea9c6ae4120e"; sha256 = "12fsslr3k1zn7rw9xnma3pvlmm4qvrapizhn4il4zqcmw51lgnl7"; }; }; @@ -227,7 +227,7 @@ let src = composerEnv.buildZipPackage { name = "laravel-framework-10f6bfaec9efb68aa88d7196b8b1b162d83040ae"; src = fetchurl { - url = https://api.github.com/repos/laravel/framework/zipball/10f6bfaec9efb68aa88d7196b8b1b162d83040ae; + url = "https://api.github.com/repos/laravel/framework/zipball/10f6bfaec9efb68aa88d7196b8b1b162d83040ae"; sha256 = "1r04396755jixbhbw1zzmyz74ng8np0ysv7g7mgcvv01s6wxw66l"; }; }; @@ -237,7 +237,7 @@ let src = composerEnv.buildZipPackage { name = "laravel-socialite-fd0f6a3dd963ca480b598649b54f92d81a43617f"; src = fetchurl { - url = https://api.github.com/repos/laravel/socialite/zipball/fd0f6a3dd963ca480b598649b54f92d81a43617f; + url = "https://api.github.com/repos/laravel/socialite/zipball/fd0f6a3dd963ca480b598649b54f92d81a43617f"; sha256 = "08x0pn4ib5nhh9jkkb5brf8yj0fq6v6gn1qg97hss3mvnhazk5wx"; }; }; @@ -247,7 +247,7 @@ let src = composerEnv.buildZipPackage { name = "league-commonmark-c4228d11e30d7493c6836d20872f9582d8ba6dcf"; src = fetchurl { - url = https://api.github.com/repos/thephpleague/commonmark/zipball/c4228d11e30d7493c6836d20872f9582d8ba6dcf; + url = "https://api.github.com/repos/thephpleague/commonmark/zipball/c4228d11e30d7493c6836d20872f9582d8ba6dcf"; sha256 = "0x18k1qmvskd5x1b3jkkmig6l734sxffj5xyfb82yrzgpw9lrld5"; }; }; @@ -257,7 +257,7 @@ let src = composerEnv.buildZipPackage { name = "league-flysystem-18634df356bfd4119fe3d6156bdb990c414c14ea"; src = fetchurl { - url = https://api.github.com/repos/thephpleague/flysystem/zipball/18634df356bfd4119fe3d6156bdb990c414c14ea; + url = "https://api.github.com/repos/thephpleague/flysystem/zipball/18634df356bfd4119fe3d6156bdb990c414c14ea"; sha256 = "1cy0xmnl3ck7cb6ibl9jjw5pmbw15mww5q06vacgq5lnx8r5w700"; }; }; @@ -267,7 +267,7 @@ let src = composerEnv.buildZipPackage { name = "league-flysystem-aws-s3-v3-4e25cc0582a36a786c31115e419c6e40498f6972"; src = fetchurl { - url = https://api.github.com/repos/thephpleague/flysystem-aws-s3-v3/zipball/4e25cc0582a36a786c31115e419c6e40498f6972; + url = "https://api.github.com/repos/thephpleague/flysystem-aws-s3-v3/zipball/4e25cc0582a36a786c31115e419c6e40498f6972"; sha256 = "1q2vkgyaz7h6z3q0z3v3l5rsvhv4xc45prgzr214cgm656i2h1ab"; }; }; @@ -277,7 +277,7 @@ let src = composerEnv.buildZipPackage { name = "league-html-to-markdown-e5600a2c5ce7b7571b16732c7086940f56f7abec"; src = fetchurl { - url = https://api.github.com/repos/thephpleague/html-to-markdown/zipball/e5600a2c5ce7b7571b16732c7086940f56f7abec; + url = "https://api.github.com/repos/thephpleague/html-to-markdown/zipball/e5600a2c5ce7b7571b16732c7086940f56f7abec"; sha256 = "1a46ki1lbhnc9gqddrka2hypw0h8zcd8dhi8gc1jf5bflhb1wmqk"; }; }; @@ -287,7 +287,7 @@ let src = composerEnv.buildZipPackage { name = "league-mime-type-detection-b38b25d7b372e9fddb00335400467b223349fd7e"; src = fetchurl { - url = https://api.github.com/repos/thephpleague/mime-type-detection/zipball/b38b25d7b372e9fddb00335400467b223349fd7e; + url = "https://api.github.com/repos/thephpleague/mime-type-detection/zipball/b38b25d7b372e9fddb00335400467b223349fd7e"; sha256 = "02ywmarr58z5w9pf5qvk6hyrnykdh6v7n5jdkgb4ykdn2plinmlz"; }; }; @@ -297,7 +297,7 @@ let src = composerEnv.buildZipPackage { name = "league-oauth1-client-88dd16b0cff68eb9167bfc849707d2c40ad91ddc"; src = fetchurl { - url = https://api.github.com/repos/thephpleague/oauth1-client/zipball/88dd16b0cff68eb9167bfc849707d2c40ad91ddc; + url = "https://api.github.com/repos/thephpleague/oauth1-client/zipball/88dd16b0cff68eb9167bfc849707d2c40ad91ddc"; sha256 = "1b0zza3qxqgn57105wbfw2fzphj3l3f7iqh7v3w98pdvaiapaf5d"; }; }; @@ -307,7 +307,7 @@ let src = composerEnv.buildZipPackage { name = "league-oauth2-client-badb01e62383430706433191b82506b6df24ad98"; src = fetchurl { - url = https://api.github.com/repos/thephpleague/oauth2-client/zipball/badb01e62383430706433191b82506b6df24ad98; + url = "https://api.github.com/repos/thephpleague/oauth2-client/zipball/badb01e62383430706433191b82506b6df24ad98"; sha256 = "1j2bmvy39k8wafisxdc0xn58gga5w9jpwp5hqjy51sk1s2ssws8i"; }; }; @@ -317,7 +317,7 @@ let src = composerEnv.buildZipPackage { name = "monolog-monolog-fd4380d6fc37626e2f799f29d91195040137eba9"; src = fetchurl { - url = https://api.github.com/repos/Seldaek/monolog/zipball/fd4380d6fc37626e2f799f29d91195040137eba9; + url = "https://api.github.com/repos/Seldaek/monolog/zipball/fd4380d6fc37626e2f799f29d91195040137eba9"; sha256 = "1k56si01sjl93mxq1pk599yqqqhldqz34qi73y5jaga0m9iq07wk"; }; }; @@ -327,7 +327,7 @@ let src = composerEnv.buildZipPackage { name = "mtdowling-jmespath.php-9b87907a81b87bc76d19a7fb2d61e61486ee9edb"; src = fetchurl { - url = https://api.github.com/repos/jmespath/jmespath.php/zipball/9b87907a81b87bc76d19a7fb2d61e61486ee9edb; + url = "https://api.github.com/repos/jmespath/jmespath.php/zipball/9b87907a81b87bc76d19a7fb2d61e61486ee9edb"; sha256 = "1ig3gi6f8gisagcn876598ps48s86s6m0c82diyksylarg3yn0yd"; }; }; @@ -337,7 +337,7 @@ let src = composerEnv.buildZipPackage { name = "nesbot-carbon-f4655858a784988f880c1b8c7feabbf02dfdf045"; src = fetchurl { - url = https://api.github.com/repos/briannesbitt/Carbon/zipball/f4655858a784988f880c1b8c7feabbf02dfdf045; + url = "https://api.github.com/repos/briannesbitt/Carbon/zipball/f4655858a784988f880c1b8c7feabbf02dfdf045"; sha256 = "18px9mynqabrhgss5nyhadncdcf7aq1mzbbyrxfqbvyv54zq4zjh"; }; }; @@ -347,7 +347,7 @@ let src = composerEnv.buildZipPackage { name = "nunomaduro-collision-f7c45764dfe4ba5f2618d265a6f1f9c72732e01d"; src = fetchurl { - url = https://api.github.com/repos/nunomaduro/collision/zipball/f7c45764dfe4ba5f2618d265a6f1f9c72732e01d; + url = "https://api.github.com/repos/nunomaduro/collision/zipball/f7c45764dfe4ba5f2618d265a6f1f9c72732e01d"; sha256 = "1cazbjxl5rqw4cl783nrymhcvjhvwwwjswr5w0si1wfhmpvr349q"; }; }; @@ -357,7 +357,7 @@ let src = composerEnv.buildZipPackage { name = "onelogin-php-saml-f30f5062f3653c4d2082892d207f4dc3e577d979"; src = fetchurl { - url = https://api.github.com/repos/onelogin/php-saml/zipball/f30f5062f3653c4d2082892d207f4dc3e577d979; + url = "https://api.github.com/repos/onelogin/php-saml/zipball/f30f5062f3653c4d2082892d207f4dc3e577d979"; sha256 = "0nl431rx1gngc2g92w4hjf2y26vjvscgbrwhq0m6kzm9kq043qzh"; }; }; @@ -367,7 +367,7 @@ let src = composerEnv.buildZipPackage { name = "opis-closure-06e2ebd25f2869e54a306dda991f7db58066f7f6"; src = fetchurl { - url = https://api.github.com/repos/opis/closure/zipball/06e2ebd25f2869e54a306dda991f7db58066f7f6; + url = "https://api.github.com/repos/opis/closure/zipball/06e2ebd25f2869e54a306dda991f7db58066f7f6"; sha256 = "0fpa1w0rmwywj67jgaldmw563p7gycahs8gpkpjvrra9zhhj4yyc"; }; }; @@ -377,7 +377,7 @@ let src = composerEnv.buildZipPackage { name = "paragonie-constant_time_encoding-f34c2b11eb9d2c9318e13540a1dbc2a3afbd939c"; src = fetchurl { - url = https://api.github.com/repos/paragonie/constant_time_encoding/zipball/f34c2b11eb9d2c9318e13540a1dbc2a3afbd939c; + url = "https://api.github.com/repos/paragonie/constant_time_encoding/zipball/f34c2b11eb9d2c9318e13540a1dbc2a3afbd939c"; sha256 = "1r1xj3j7s5mskw5gh3ars4dfhvcn7d252gdqgpif80026kj5fvrp"; }; }; @@ -387,7 +387,7 @@ let src = composerEnv.buildZipPackage { name = "paragonie-random_compat-996434e5492cb4c3edcb9168db6fbb1359ef965a"; src = fetchurl { - url = https://api.github.com/repos/paragonie/random_compat/zipball/996434e5492cb4c3edcb9168db6fbb1359ef965a; + url = "https://api.github.com/repos/paragonie/random_compat/zipball/996434e5492cb4c3edcb9168db6fbb1359ef965a"; sha256 = "0ky7lal59dihf969r1k3pb96ql8zzdc5062jdbg69j6rj0scgkyx"; }; }; @@ -397,7 +397,7 @@ let src = composerEnv.buildZipPackage { name = "phenx-php-font-lib-ca6ad461f032145fff5971b5985e5af9e7fa88d8"; src = fetchurl { - url = https://api.github.com/repos/PhenX/php-font-lib/zipball/ca6ad461f032145fff5971b5985e5af9e7fa88d8; + url = "https://api.github.com/repos/PhenX/php-font-lib/zipball/ca6ad461f032145fff5971b5985e5af9e7fa88d8"; sha256 = "0kl9lks1kpniby8dn8racjcjp6xjnhl3065y7ivarbl6ni6hyyxw"; }; }; @@ -407,7 +407,7 @@ let src = composerEnv.buildZipPackage { name = "phenx-php-svg-lib-5fa61b65e612ce1ae15f69b3d223cb14ecc60e32"; src = fetchurl { - url = https://api.github.com/repos/PhenX/php-svg-lib/zipball/5fa61b65e612ce1ae15f69b3d223cb14ecc60e32; + url = "https://api.github.com/repos/PhenX/php-svg-lib/zipball/5fa61b65e612ce1ae15f69b3d223cb14ecc60e32"; sha256 = "1ppi3hs2r4cbd6b2xwf4znci6hpbs8469kqxk3msf7vi6vfnybbj"; }; }; @@ -417,7 +417,7 @@ let src = composerEnv.buildZipPackage { name = "php-parallel-lint-php-console-color-b6af326b2088f1ad3b264696c9fd590ec395b49e"; src = fetchurl { - url = https://api.github.com/repos/php-parallel-lint/PHP-Console-Color/zipball/b6af326b2088f1ad3b264696c9fd590ec395b49e; + url = "https://api.github.com/repos/php-parallel-lint/PHP-Console-Color/zipball/b6af326b2088f1ad3b264696c9fd590ec395b49e"; sha256 = "030449mkpxs35y8dk336ls3bfdq3zjnxswnk5khlg45z5147cr3k"; }; }; @@ -427,7 +427,7 @@ let src = composerEnv.buildZipPackage { name = "php-parallel-lint-php-console-highlighter-21bf002f077b177f056d8cb455c5ed573adfdbb8"; src = fetchurl { - url = https://api.github.com/repos/php-parallel-lint/PHP-Console-Highlighter/zipball/21bf002f077b177f056d8cb455c5ed573adfdbb8; + url = "https://api.github.com/repos/php-parallel-lint/PHP-Console-Highlighter/zipball/21bf002f077b177f056d8cb455c5ed573adfdbb8"; sha256 = "013phmp5n6hp6mvlpbqbrih0zd8h7xc152dpzxxf49b0jczxh8y4"; }; }; @@ -437,7 +437,7 @@ let src = composerEnv.buildZipPackage { name = "phpoption-phpoption-5455cb38aed4523f99977c4a12ef19da4bfe2a28"; src = fetchurl { - url = https://api.github.com/repos/schmittjoh/php-option/zipball/5455cb38aed4523f99977c4a12ef19da4bfe2a28; + url = "https://api.github.com/repos/schmittjoh/php-option/zipball/5455cb38aed4523f99977c4a12ef19da4bfe2a28"; sha256 = "009q2afjkjl8psisr8jsw9k08qnkb0f4hgd6izrjmm06bd7bk9ah"; }; }; @@ -447,7 +447,7 @@ let src = composerEnv.buildZipPackage { name = "phpseclib-phpseclib-6e794226a35159eb06f355efe59a0075a16551dd"; src = fetchurl { - url = https://api.github.com/repos/phpseclib/phpseclib/zipball/6e794226a35159eb06f355efe59a0075a16551dd; + url = "https://api.github.com/repos/phpseclib/phpseclib/zipball/6e794226a35159eb06f355efe59a0075a16551dd"; sha256 = "1jjgzckgpr6myf4lcngsgmmqib5x2rv93yj7syg1xyawls4qj3yb"; }; }; @@ -457,7 +457,7 @@ let src = composerEnv.buildZipPackage { name = "pragmarx-google2fa-26c4c5cf30a2844ba121760fd7301f8ad240100b"; src = fetchurl { - url = https://api.github.com/repos/antonioribeiro/google2fa/zipball/26c4c5cf30a2844ba121760fd7301f8ad240100b; + url = "https://api.github.com/repos/antonioribeiro/google2fa/zipball/26c4c5cf30a2844ba121760fd7301f8ad240100b"; sha256 = "1jmc7s3hbczvb0h4kfmya67l969nfww3lmc4slvzsz0zd769434h"; }; }; @@ -467,7 +467,7 @@ let src = composerEnv.buildZipPackage { name = "predis-predis-c50c3393bb9f47fa012d0cdfb727a266b0818259"; src = fetchurl { - url = https://api.github.com/repos/predis/predis/zipball/c50c3393bb9f47fa012d0cdfb727a266b0818259; + url = "https://api.github.com/repos/predis/predis/zipball/c50c3393bb9f47fa012d0cdfb727a266b0818259"; sha256 = "09riabf99jmxydrqn8cm6nsw3fbp307fqcpc9iw4ag2qfhwm2v73"; }; }; @@ -477,7 +477,7 @@ let src = composerEnv.buildZipPackage { name = "psr-container-8622567409010282b7aeebe4bb841fe98b58dcaf"; src = fetchurl { - url = https://api.github.com/repos/php-fig/container/zipball/8622567409010282b7aeebe4bb841fe98b58dcaf; + url = "https://api.github.com/repos/php-fig/container/zipball/8622567409010282b7aeebe4bb841fe98b58dcaf"; sha256 = "0qfvyfp3mli776kb9zda5cpc8cazj3prk0bg0gm254kwxyfkfrwn"; }; }; @@ -487,7 +487,7 @@ let src = composerEnv.buildZipPackage { name = "psr-http-client-2dfb5f6c5eff0e91e20e913f8c5452ed95b86621"; src = fetchurl { - url = https://api.github.com/repos/php-fig/http-client/zipball/2dfb5f6c5eff0e91e20e913f8c5452ed95b86621; + url = "https://api.github.com/repos/php-fig/http-client/zipball/2dfb5f6c5eff0e91e20e913f8c5452ed95b86621"; sha256 = "0cmkifa3ji1r8kn3y1rwg81rh8g2crvnhbv2am6d688dzsbw967v"; }; }; @@ -497,7 +497,7 @@ let src = composerEnv.buildZipPackage { name = "psr-http-factory-12ac7fcd07e5b077433f5f2bee95b3a771bf61be"; src = fetchurl { - url = https://api.github.com/repos/php-fig/http-factory/zipball/12ac7fcd07e5b077433f5f2bee95b3a771bf61be; + url = "https://api.github.com/repos/php-fig/http-factory/zipball/12ac7fcd07e5b077433f5f2bee95b3a771bf61be"; sha256 = "0inbnqpc5bfhbbda9dwazsrw9xscfnc8rdx82q1qm3r446mc1vds"; }; }; @@ -507,7 +507,7 @@ let src = composerEnv.buildZipPackage { name = "psr-http-message-f6561bf28d520154e4b0ec72be95418abe6d9363"; src = fetchurl { - url = https://api.github.com/repos/php-fig/http-message/zipball/f6561bf28d520154e4b0ec72be95418abe6d9363; + url = "https://api.github.com/repos/php-fig/http-message/zipball/f6561bf28d520154e4b0ec72be95418abe6d9363"; sha256 = "195dd67hva9bmr52iadr4kyp2gw2f5l51lplfiay2pv6l9y4cf45"; }; }; @@ -517,7 +517,7 @@ let src = composerEnv.buildZipPackage { name = "psr-log-d49695b909c3b7628b6289db5479a1c204601f11"; src = fetchurl { - url = https://api.github.com/repos/php-fig/log/zipball/d49695b909c3b7628b6289db5479a1c204601f11; + url = "https://api.github.com/repos/php-fig/log/zipball/d49695b909c3b7628b6289db5479a1c204601f11"; sha256 = "0sb0mq30dvmzdgsnqvw3xh4fb4bqjncx72kf8n622f94dd48amln"; }; }; @@ -527,7 +527,7 @@ let src = composerEnv.buildZipPackage { name = "psr-simple-cache-408d5eafb83c57f6365a3ca330ff23aa4a5fa39b"; src = fetchurl { - url = https://api.github.com/repos/php-fig/simple-cache/zipball/408d5eafb83c57f6365a3ca330ff23aa4a5fa39b; + url = "https://api.github.com/repos/php-fig/simple-cache/zipball/408d5eafb83c57f6365a3ca330ff23aa4a5fa39b"; sha256 = "1djgzclkamjxi9jy4m9ggfzgq1vqxaga2ip7l3cj88p7rwkzjxgw"; }; }; @@ -537,7 +537,7 @@ let src = composerEnv.buildZipPackage { name = "ralouphie-getallheaders-120b605dfeb996808c31b6477290a714d356e822"; src = fetchurl { - url = https://api.github.com/repos/ralouphie/getallheaders/zipball/120b605dfeb996808c31b6477290a714d356e822; + url = "https://api.github.com/repos/ralouphie/getallheaders/zipball/120b605dfeb996808c31b6477290a714d356e822"; sha256 = "1bv7ndkkankrqlr2b4kw7qp3fl0dxi6bp26bnim6dnlhavd6a0gg"; }; }; @@ -547,7 +547,7 @@ let src = composerEnv.buildZipPackage { name = "ramsey-uuid-ffa80ab953edd85d5b6c004f96181a538aad35a3"; src = fetchurl { - url = https://api.github.com/repos/ramsey/uuid/zipball/ffa80ab953edd85d5b6c004f96181a538aad35a3; + url = "https://api.github.com/repos/ramsey/uuid/zipball/ffa80ab953edd85d5b6c004f96181a538aad35a3"; sha256 = "043g1nwpbvqrvq6ri2517254d72538h5jfzv9miafnws4ajwfpzg"; }; }; @@ -557,7 +557,7 @@ let src = composerEnv.buildZipPackage { name = "robrichards-xmlseclibs-f8f19e58f26cdb42c54b214ff8a820760292f8df"; src = fetchurl { - url = https://api.github.com/repos/robrichards/xmlseclibs/zipball/f8f19e58f26cdb42c54b214ff8a820760292f8df; + url = "https://api.github.com/repos/robrichards/xmlseclibs/zipball/f8f19e58f26cdb42c54b214ff8a820760292f8df"; sha256 = "01zlpm36rrdj310cfmiz2fnabszxd3fq80fa8x8j3f9ki7dvhh5y"; }; }; @@ -567,7 +567,7 @@ let src = composerEnv.buildZipPackage { name = "sabberworm-php-css-parser-d217848e1396ef962fb1997cf3e2421acba7f796"; src = fetchurl { - url = https://api.github.com/repos/sabberworm/PHP-CSS-Parser/zipball/d217848e1396ef962fb1997cf3e2421acba7f796; + url = "https://api.github.com/repos/sabberworm/PHP-CSS-Parser/zipball/d217848e1396ef962fb1997cf3e2421acba7f796"; sha256 = "17jkly8k02p54qa004spikakxis8syjw3vhwgrsi9g1cb4wsg3g9"; }; }; @@ -577,7 +577,7 @@ let src = composerEnv.buildZipPackage { name = "socialiteproviders-discord-c6eddeb07ace7473e82d02d4db852dfacf5ef574"; src = fetchurl { - url = https://api.github.com/repos/SocialiteProviders/Discord/zipball/c6eddeb07ace7473e82d02d4db852dfacf5ef574; + url = "https://api.github.com/repos/SocialiteProviders/Discord/zipball/c6eddeb07ace7473e82d02d4db852dfacf5ef574"; sha256 = "1w8m7jmlsdk94cqckgd75mwblh3jj6j16w3g4hzysyms25g091xc"; }; }; @@ -587,7 +587,7 @@ let src = composerEnv.buildZipPackage { name = "socialiteproviders-gitlab-a8f67d3b02c9ee8c70c25c6728417c0eddcbbb9d"; src = fetchurl { - url = https://api.github.com/repos/SocialiteProviders/GitLab/zipball/a8f67d3b02c9ee8c70c25c6728417c0eddcbbb9d; + url = "https://api.github.com/repos/SocialiteProviders/GitLab/zipball/a8f67d3b02c9ee8c70c25c6728417c0eddcbbb9d"; sha256 = "1blv2h69dmm0r0djz3h0l0cxkxmzd1fzgg13r3npxx7c80xjpw3a"; }; }; @@ -597,7 +597,7 @@ let src = composerEnv.buildZipPackage { name = "socialiteproviders-manager-0f5e82af0404df0080bdc5c105cef936c1711524"; src = fetchurl { - url = https://api.github.com/repos/SocialiteProviders/Manager/zipball/0f5e82af0404df0080bdc5c105cef936c1711524; + url = "https://api.github.com/repos/SocialiteProviders/Manager/zipball/0f5e82af0404df0080bdc5c105cef936c1711524"; sha256 = "0ppmln72khli94ylnsjarnhzkqzpkc32pn3zf3ljahm1yghccczx"; }; }; @@ -607,7 +607,7 @@ let src = composerEnv.buildZipPackage { name = "socialiteproviders-microsoft-azure-9b23e02ff711de42e513aa55f768a4f1c67c0e41"; src = fetchurl { - url = https://api.github.com/repos/SocialiteProviders/Microsoft-Azure/zipball/9b23e02ff711de42e513aa55f768a4f1c67c0e41; + url = "https://api.github.com/repos/SocialiteProviders/Microsoft-Azure/zipball/9b23e02ff711de42e513aa55f768a4f1c67c0e41"; sha256 = "01i53v1pcr3nfpydpy0ka5jrdyygpi4vc5w24022913nfjqg3bqm"; }; }; @@ -617,7 +617,7 @@ let src = composerEnv.buildZipPackage { name = "socialiteproviders-okta-e3ef9f23c7d2f86b3b16a174b82333cf4e2459e8"; src = fetchurl { - url = https://api.github.com/repos/SocialiteProviders/Okta/zipball/e3ef9f23c7d2f86b3b16a174b82333cf4e2459e8; + url = "https://api.github.com/repos/SocialiteProviders/Okta/zipball/e3ef9f23c7d2f86b3b16a174b82333cf4e2459e8"; sha256 = "1a3anw5di5nqiabvqpmsjv5x0jasmsn4y876qsv77gazxja880ng"; }; }; @@ -627,7 +627,7 @@ let src = composerEnv.buildZipPackage { name = "socialiteproviders-slack-2b781c95daf06ec87a8f3deba2ab613d6bea5e8d"; src = fetchurl { - url = https://api.github.com/repos/SocialiteProviders/Slack/zipball/2b781c95daf06ec87a8f3deba2ab613d6bea5e8d; + url = "https://api.github.com/repos/SocialiteProviders/Slack/zipball/2b781c95daf06ec87a8f3deba2ab613d6bea5e8d"; sha256 = "1xilg7l1wc1vgwyakhfl8dpvgkjqx90g4khvzi411j9xa2wvpprh"; }; }; @@ -637,7 +637,7 @@ let src = composerEnv.buildZipPackage { name = "socialiteproviders-twitch-7accf30ae7a3139b757b4ca8f34989c09a3dbee7"; src = fetchurl { - url = https://api.github.com/repos/SocialiteProviders/Twitch/zipball/7accf30ae7a3139b757b4ca8f34989c09a3dbee7; + url = "https://api.github.com/repos/SocialiteProviders/Twitch/zipball/7accf30ae7a3139b757b4ca8f34989c09a3dbee7"; sha256 = "089i4fwxb32zmbxib0544jfs48wzjyp7bsqss2bf2xx89dsrx4ah"; }; }; @@ -647,7 +647,7 @@ let src = composerEnv.buildZipPackage { name = "ssddanbrown-htmldiff-f60d5cc278b60305ab980a6665f46117c5b589c0"; src = fetchurl { - url = https://api.github.com/repos/ssddanbrown/HtmlDiff/zipball/f60d5cc278b60305ab980a6665f46117c5b589c0; + url = "https://api.github.com/repos/ssddanbrown/HtmlDiff/zipball/f60d5cc278b60305ab980a6665f46117c5b589c0"; sha256 = "12h3swr8rjf5w78kfgwzkf0zb59b4a8mjwf65fgcgvjg115wha9x"; }; }; @@ -657,7 +657,7 @@ let src = composerEnv.buildZipPackage { name = "swiftmailer-swiftmailer-8a5d5072dca8f48460fce2f4131fcc495eec654c"; src = fetchurl { - url = https://api.github.com/repos/swiftmailer/swiftmailer/zipball/8a5d5072dca8f48460fce2f4131fcc495eec654c; + url = "https://api.github.com/repos/swiftmailer/swiftmailer/zipball/8a5d5072dca8f48460fce2f4131fcc495eec654c"; sha256 = "1p9m4fw9y9md9a7msbmnc0hpdrky8dwrllnyg1qf1cdyp9d70x1d"; }; }; @@ -667,7 +667,7 @@ let src = composerEnv.buildZipPackage { name = "symfony-console-8dbd23ef7a8884051482183ddee8d9061b5feed0"; src = fetchurl { - url = https://api.github.com/repos/symfony/console/zipball/8dbd23ef7a8884051482183ddee8d9061b5feed0; + url = "https://api.github.com/repos/symfony/console/zipball/8dbd23ef7a8884051482183ddee8d9061b5feed0"; sha256 = "1p03ls8djpyhplf1irbg5ym3rjqviknwvg1mz9v6kdvnr694vzxn"; }; }; @@ -677,7 +677,7 @@ let src = composerEnv.buildZipPackage { name = "symfony-css-selector-7fb120adc7f600a59027775b224c13a33530dd90"; src = fetchurl { - url = https://api.github.com/repos/symfony/css-selector/zipball/7fb120adc7f600a59027775b224c13a33530dd90; + url = "https://api.github.com/repos/symfony/css-selector/zipball/7fb120adc7f600a59027775b224c13a33530dd90"; sha256 = "03jblgg300imj7s731ynxm579a6qj87lhd4lnhahbf4m7y65vj7w"; }; }; @@ -687,7 +687,7 @@ let src = composerEnv.buildZipPackage { name = "symfony-debug-43ede438d4cb52cd589ae5dc070e9323866ba8e0"; src = fetchurl { - url = https://api.github.com/repos/symfony/debug/zipball/43ede438d4cb52cd589ae5dc070e9323866ba8e0; + url = "https://api.github.com/repos/symfony/debug/zipball/43ede438d4cb52cd589ae5dc070e9323866ba8e0"; sha256 = "1min1v940rrv83w4fan9ypw4zj62wmi5nwn76pq618pdi8z00kpn"; }; }; @@ -697,7 +697,7 @@ let src = composerEnv.buildZipPackage { name = "symfony-deprecation-contracts-5f38c8804a9e97d23e0c8d63341088cd8a22d627"; src = fetchurl { - url = https://api.github.com/repos/symfony/deprecation-contracts/zipball/5f38c8804a9e97d23e0c8d63341088cd8a22d627; + url = "https://api.github.com/repos/symfony/deprecation-contracts/zipball/5f38c8804a9e97d23e0c8d63341088cd8a22d627"; sha256 = "11k6a8v9b6p0j788fgykq6s55baba29lg37fwvmn4igxxkfwmbp3"; }; }; @@ -707,7 +707,7 @@ let src = composerEnv.buildZipPackage { name = "symfony-error-handler-51f98f7aa99f00f3b1da6bafe934e67ae6ba6dc5"; src = fetchurl { - url = https://api.github.com/repos/symfony/error-handler/zipball/51f98f7aa99f00f3b1da6bafe934e67ae6ba6dc5; + url = "https://api.github.com/repos/symfony/error-handler/zipball/51f98f7aa99f00f3b1da6bafe934e67ae6ba6dc5"; sha256 = "1qy8j16crb271pz6frjxyy2b41f1ap8w2mwb2n5zr3gmg0iqm487"; }; }; @@ -717,7 +717,7 @@ let src = composerEnv.buildZipPackage { name = "symfony-event-dispatcher-2fe81680070043c4c80e7cedceb797e34f377bac"; src = fetchurl { - url = https://api.github.com/repos/symfony/event-dispatcher/zipball/2fe81680070043c4c80e7cedceb797e34f377bac; + url = "https://api.github.com/repos/symfony/event-dispatcher/zipball/2fe81680070043c4c80e7cedceb797e34f377bac"; sha256 = "0qf59l1a1h25hl6bp1wwfl5s825f8ybw2jiwhalw7gfnrx8x68fb"; }; }; @@ -727,7 +727,7 @@ let src = composerEnv.buildZipPackage { name = "symfony-event-dispatcher-contracts-84e23fdcd2517bf37aecbd16967e83f0caee25a7"; src = fetchurl { - url = https://api.github.com/repos/symfony/event-dispatcher-contracts/zipball/84e23fdcd2517bf37aecbd16967e83f0caee25a7; + url = "https://api.github.com/repos/symfony/event-dispatcher-contracts/zipball/84e23fdcd2517bf37aecbd16967e83f0caee25a7"; sha256 = "1pcfrlc0rg8vdnp23y3y1p5qzng5nxf5i2c36g9x9f480xrnc1fw"; }; }; @@ -737,7 +737,7 @@ let src = composerEnv.buildZipPackage { name = "symfony-finder-70362f1e112280d75b30087c7598b837c1b468b6"; src = fetchurl { - url = https://api.github.com/repos/symfony/finder/zipball/70362f1e112280d75b30087c7598b837c1b468b6; + url = "https://api.github.com/repos/symfony/finder/zipball/70362f1e112280d75b30087c7598b837c1b468b6"; sha256 = "0f75c5mjig5ypigb4s1av3w67xizx6pl15wrqbyxa39a9qq58x6v"; }; }; @@ -747,7 +747,7 @@ let src = composerEnv.buildZipPackage { name = "symfony-http-client-contracts-7e82f6084d7cae521a75ef2cb5c9457bbda785f4"; src = fetchurl { - url = https://api.github.com/repos/symfony/http-client-contracts/zipball/7e82f6084d7cae521a75ef2cb5c9457bbda785f4; + url = "https://api.github.com/repos/symfony/http-client-contracts/zipball/7e82f6084d7cae521a75ef2cb5c9457bbda785f4"; sha256 = "04mszmb94y0xjs0cwqxzhpf65kfqhhqznldifbxvrrlxb9nn23qc"; }; }; @@ -757,7 +757,7 @@ let src = composerEnv.buildZipPackage { name = "symfony-http-foundation-b9a91102f548e0111f4996e8c622fb1d1d479850"; src = fetchurl { - url = https://api.github.com/repos/symfony/http-foundation/zipball/b9a91102f548e0111f4996e8c622fb1d1d479850; + url = "https://api.github.com/repos/symfony/http-foundation/zipball/b9a91102f548e0111f4996e8c622fb1d1d479850"; sha256 = "0f6hxzrcijpjiwfjlw0bgn17a6d7bdfr7bc8nlmhfig7v945rbwq"; }; }; @@ -767,7 +767,7 @@ let src = composerEnv.buildZipPackage { name = "symfony-http-kernel-6f1fcca1154f782796549f4f4e5090bae9525c0e"; src = fetchurl { - url = https://api.github.com/repos/symfony/http-kernel/zipball/6f1fcca1154f782796549f4f4e5090bae9525c0e; + url = "https://api.github.com/repos/symfony/http-kernel/zipball/6f1fcca1154f782796549f4f4e5090bae9525c0e"; sha256 = "1i9bd9kp1yz55922hf95chdnzxbaavx87hxjzy6dysg81sjw89fw"; }; }; @@ -777,7 +777,7 @@ let src = composerEnv.buildZipPackage { name = "symfony-mime-a756033d0a7e53db389618653ae991eba5a19a11"; src = fetchurl { - url = https://api.github.com/repos/symfony/mime/zipball/a756033d0a7e53db389618653ae991eba5a19a11; + url = "https://api.github.com/repos/symfony/mime/zipball/a756033d0a7e53db389618653ae991eba5a19a11"; sha256 = "06awwbkbg6fkkbls4rk4qkdzrigik3zm68cwa8bazsy7izqrh3nj"; }; }; @@ -787,7 +787,7 @@ let src = composerEnv.buildZipPackage { name = "symfony-polyfill-ctype-46cd95797e9df938fdd2b03693b5fca5e64b01ce"; src = fetchurl { - url = https://api.github.com/repos/symfony/polyfill-ctype/zipball/46cd95797e9df938fdd2b03693b5fca5e64b01ce; + url = "https://api.github.com/repos/symfony/polyfill-ctype/zipball/46cd95797e9df938fdd2b03693b5fca5e64b01ce"; sha256 = "0z4iiznxxs4r72xs4irqqb6c0wnwpwf0hklwn2imls67haq330zn"; }; }; @@ -797,7 +797,7 @@ let src = composerEnv.buildZipPackage { name = "symfony-polyfill-iconv-63b5bb7db83e5673936d6e3b8b3e022ff6474933"; src = fetchurl { - url = https://api.github.com/repos/symfony/polyfill-iconv/zipball/63b5bb7db83e5673936d6e3b8b3e022ff6474933; + url = "https://api.github.com/repos/symfony/polyfill-iconv/zipball/63b5bb7db83e5673936d6e3b8b3e022ff6474933"; sha256 = "1jyjsjprsgb3r6cbc4x1wg1q1zqakqm8a62ah5lppxnjgq1sgjc5"; }; }; @@ -807,7 +807,7 @@ let src = composerEnv.buildZipPackage { name = "symfony-polyfill-intl-idn-65bd267525e82759e7d8c4e8ceea44f398838e65"; src = fetchurl { - url = https://api.github.com/repos/symfony/polyfill-intl-idn/zipball/65bd267525e82759e7d8c4e8ceea44f398838e65; + url = "https://api.github.com/repos/symfony/polyfill-intl-idn/zipball/65bd267525e82759e7d8c4e8ceea44f398838e65"; sha256 = "1cx2cjx0vzni297l7avd3cb1q4c8d2hylkvdqcjlpxjqdimn4jkn"; }; }; @@ -817,7 +817,7 @@ let src = composerEnv.buildZipPackage { name = "symfony-polyfill-intl-normalizer-8590a5f561694770bdcd3f9b5c69dde6945028e8"; src = fetchurl { - url = https://api.github.com/repos/symfony/polyfill-intl-normalizer/zipball/8590a5f561694770bdcd3f9b5c69dde6945028e8; + url = "https://api.github.com/repos/symfony/polyfill-intl-normalizer/zipball/8590a5f561694770bdcd3f9b5c69dde6945028e8"; sha256 = "1c60xin00q0d2gbyaiglxppn5hqwki616v5chzwyhlhf6aplwsh3"; }; }; @@ -827,7 +827,7 @@ let src = composerEnv.buildZipPackage { name = "symfony-polyfill-mbstring-9174a3d80210dca8daa7f31fec659150bbeabfc6"; src = fetchurl { - url = https://api.github.com/repos/symfony/polyfill-mbstring/zipball/9174a3d80210dca8daa7f31fec659150bbeabfc6; + url = "https://api.github.com/repos/symfony/polyfill-mbstring/zipball/9174a3d80210dca8daa7f31fec659150bbeabfc6"; sha256 = "17bhba3093di6xgi8f0cnf3cdd7fnbyp9l76d9y33cym6213ayx1"; }; }; @@ -837,7 +837,7 @@ let src = composerEnv.buildZipPackage { name = "symfony-polyfill-php72-9a142215a36a3888e30d0a9eeea9766764e96976"; src = fetchurl { - url = https://api.github.com/repos/symfony/polyfill-php72/zipball/9a142215a36a3888e30d0a9eeea9766764e96976; + url = "https://api.github.com/repos/symfony/polyfill-php72/zipball/9a142215a36a3888e30d0a9eeea9766764e96976"; sha256 = "06ipbcvrxjzgvraf2z9fwgy0bzvzjvs5z1j67grg1gb15x3d428b"; }; }; @@ -847,7 +847,7 @@ let src = composerEnv.buildZipPackage { name = "symfony-polyfill-php73-fba8933c384d6476ab14fb7b8526e5287ca7e010"; src = fetchurl { - url = https://api.github.com/repos/symfony/polyfill-php73/zipball/fba8933c384d6476ab14fb7b8526e5287ca7e010; + url = "https://api.github.com/repos/symfony/polyfill-php73/zipball/fba8933c384d6476ab14fb7b8526e5287ca7e010"; sha256 = "0fc1d60iw8iar2zcvkzwdvx0whkbw8p6ll0cry39nbkklzw85n1h"; }; }; @@ -857,7 +857,7 @@ let src = composerEnv.buildZipPackage { name = "symfony-polyfill-php80-1100343ed1a92e3a38f9ae122fc0eb21602547be"; src = fetchurl { - url = https://api.github.com/repos/symfony/polyfill-php80/zipball/1100343ed1a92e3a38f9ae122fc0eb21602547be; + url = "https://api.github.com/repos/symfony/polyfill-php80/zipball/1100343ed1a92e3a38f9ae122fc0eb21602547be"; sha256 = "0kwk2qgwswsmbfp1qx31ahw3lisgyivwhw5dycshr5v2iwwx3rhi"; }; }; @@ -867,7 +867,7 @@ let src = composerEnv.buildZipPackage { name = "symfony-process-13d3161ef63a8ec21eeccaaf9a4d7f784a87a97d"; src = fetchurl { - url = https://api.github.com/repos/symfony/process/zipball/13d3161ef63a8ec21eeccaaf9a4d7f784a87a97d; + url = "https://api.github.com/repos/symfony/process/zipball/13d3161ef63a8ec21eeccaaf9a4d7f784a87a97d"; sha256 = "1h41y2k100fmrjz90m0vafpfgg2da6byy9m6vf1j9q41bhv6zccl"; }; }; @@ -877,7 +877,7 @@ let src = composerEnv.buildZipPackage { name = "symfony-routing-9ddf033927ad9f30ba2bfd167a7b342cafa13e8e"; src = fetchurl { - url = https://api.github.com/repos/symfony/routing/zipball/9ddf033927ad9f30ba2bfd167a7b342cafa13e8e; + url = "https://api.github.com/repos/symfony/routing/zipball/9ddf033927ad9f30ba2bfd167a7b342cafa13e8e"; sha256 = "1l3b5z0kn7f9q0whrm2wnxv0l038w3la75bf95pbs74szlnibfhz"; }; }; @@ -887,7 +887,7 @@ let src = composerEnv.buildZipPackage { name = "symfony-service-contracts-f040a30e04b57fbcc9c6cbcf4dbaa96bd318b9bb"; src = fetchurl { - url = https://api.github.com/repos/symfony/service-contracts/zipball/f040a30e04b57fbcc9c6cbcf4dbaa96bd318b9bb; + url = "https://api.github.com/repos/symfony/service-contracts/zipball/f040a30e04b57fbcc9c6cbcf4dbaa96bd318b9bb"; sha256 = "1i573rmajc33a9nrgwgc4k3svg29yp9xv17gp133rd1i705hwv1y"; }; }; @@ -897,7 +897,7 @@ let src = composerEnv.buildZipPackage { name = "symfony-translation-db0ba1e85280d8ff11e38d53c70f8814d4d740f5"; src = fetchurl { - url = https://api.github.com/repos/symfony/translation/zipball/db0ba1e85280d8ff11e38d53c70f8814d4d740f5; + url = "https://api.github.com/repos/symfony/translation/zipball/db0ba1e85280d8ff11e38d53c70f8814d4d740f5"; sha256 = "08qxma91sffj8vqzb8dshwsxqf80y9kym3bsxx3gz05ksi01hk1d"; }; }; @@ -907,7 +907,7 @@ let src = composerEnv.buildZipPackage { name = "symfony-translation-contracts-95c812666f3e91db75385749fe219c5e494c7f95"; src = fetchurl { - url = https://api.github.com/repos/symfony/translation-contracts/zipball/95c812666f3e91db75385749fe219c5e494c7f95; + url = "https://api.github.com/repos/symfony/translation-contracts/zipball/95c812666f3e91db75385749fe219c5e494c7f95"; sha256 = "073l1pbmwbkaviwwjq9ypb1w7dk366nn2vn1vancbal0zqk0zx7b"; }; }; @@ -917,7 +917,7 @@ let src = composerEnv.buildZipPackage { name = "symfony-var-dumper-50286e2b7189bfb4f419c0731e86632cddf7c5ee"; src = fetchurl { - url = https://api.github.com/repos/symfony/var-dumper/zipball/50286e2b7189bfb4f419c0731e86632cddf7c5ee; + url = "https://api.github.com/repos/symfony/var-dumper/zipball/50286e2b7189bfb4f419c0731e86632cddf7c5ee"; sha256 = "05yb04dvb5higlbhgdl2hv4wnnmxi6l53xvls5v56wj21ddsk6vf"; }; }; @@ -927,7 +927,7 @@ let src = composerEnv.buildZipPackage { name = "tijsverkoyen-css-to-inline-styles-b43b05cf43c1b6d849478965062b6ef73e223bb5"; src = fetchurl { - url = https://api.github.com/repos/tijsverkoyen/CssToInlineStyles/zipball/b43b05cf43c1b6d849478965062b6ef73e223bb5; + url = "https://api.github.com/repos/tijsverkoyen/CssToInlineStyles/zipball/b43b05cf43c1b6d849478965062b6ef73e223bb5"; sha256 = "0lc6jviz8faqxxs453dbqvfdmm6l2iczxla22v2r6xhakl58pf3w"; }; }; @@ -937,7 +937,7 @@ let src = composerEnv.buildZipPackage { name = "vlucas-phpdotenv-a1bf4c9853d90ade427b4efe35355fc41b3d6988"; src = fetchurl { - url = https://api.github.com/repos/vlucas/phpdotenv/zipball/a1bf4c9853d90ade427b4efe35355fc41b3d6988; + url = "https://api.github.com/repos/vlucas/phpdotenv/zipball/a1bf4c9853d90ade427b4efe35355fc41b3d6988"; sha256 = "04cks58khh2rx1ni5p1v8i37k4hy6zwkazlas0jqlrxhznmd50wi"; }; }; diff --git a/pkgs/servers/web-apps/hedgedoc/default.nix b/pkgs/servers/web-apps/hedgedoc/default.nix index 0d9ac5d192d3..62fa819fb8a5 100644 --- a/pkgs/servers/web-apps/hedgedoc/default.nix +++ b/pkgs/servers/web-apps/hedgedoc/default.nix @@ -13,7 +13,7 @@ }: let - pinData = (builtins.fromJSON (builtins.readFile ./pin.json)); + pinData = lib.importJSON ./pin.json; # we need a different version than the one already available in nixpkgs esbuild-hedgedoc = buildGoModule rec { diff --git a/pkgs/servers/web-apps/matomo/default.nix b/pkgs/servers/web-apps/matomo/default.nix index 673b5bbc3b2d..ad8dc85f70fa 100644 --- a/pkgs/servers/web-apps/matomo/default.nix +++ b/pkgs/servers/web-apps/matomo/default.nix @@ -3,16 +3,16 @@ let versions = { matomo = { - version = "4.4.1"; - sha256 = "0y8ljdj97znvd3hkkr7s6s9k8m93agw3z9cfw1azzaxgc46akfcl"; + version = "4.5.0"; + sha256 = "sha256-OyjdzY+ENYxOTVjDLjj2unJbpaGODIH2I5Acmt45HDA="; }; matomo-beta = { - version = "4.4.1"; + version = "4.6.0"; # `beta` examples: "b1", "rc1", null - # TOOD when updating: use null if stable version is >= latest beta or release candidate - beta = null; - sha256 = "0y8ljdj97znvd3hkkr7s6s9k8m93agw3z9cfw1azzaxgc46akfcl"; + # when updating: use null if stable version is >= latest beta or release candidate + beta = "b2"; + sha256 = "sha256-7p/ZPtr5a/tBjrM27ILF3rNfxDIWuzWKCXNom3HlyL8="; }; }; common = pname: { version, sha256, beta ? null }: @@ -74,10 +74,9 @@ let "misc/composer/clean-xhprof.sh" "misc/cron/archive.sh" "plugins/Installation/FormDatabaseSetup.php" - "vendor/leafo/lessphp/package.sh" "vendor/pear/archive_tar/sync-php4" "vendor/szymach/c-pchart/coverage.sh" - # drupal_test.sh does not exist in 3.12.0-b3; added for 3.13.0 + "vendor/matomo/matomo-php-tracker/run_tests.sh" "vendor/twig/twig/drupal_test.sh" ]; @@ -92,6 +91,8 @@ let length="$(wc -c "$f" | cut -d' ' -f1)" hash="$(md5sum "$f" | cut -d' ' -f1)" sed -i "s:\\(\"$f\"[^(]*(\\).*:\\1\"$length\", \"$hash\"),:g" config/manifest.inc.php + else + echo "INFO(files-to-fix): $f does not exist in this version" fi done popd > /dev/null diff --git a/pkgs/servers/web-apps/moodle/default.nix b/pkgs/servers/web-apps/moodle/default.nix index d6fcedf8dc6c..35c519c16fab 100644 --- a/pkgs/servers/web-apps/moodle/default.nix +++ b/pkgs/servers/web-apps/moodle/default.nix @@ -1,7 +1,7 @@ { lib, stdenv, fetchurl, writeText, plugins ? [ ] }: let - version = "3.11.2"; + version = "3.11.4"; stableVersion = lib.concatStrings (lib.take 2 (lib.splitVersion version)); in stdenv.mkDerivation rec { @@ -9,9 +9,8 @@ in stdenv.mkDerivation rec { inherit version; src = fetchurl { - url = - "https://download.moodle.org/stable${stableVersion}/${pname}-${version}.tgz"; - sha256 = "sha256-owe/8CVz7+uBrHJQDN4csWVcdk49AvT1ip88lAe/tKg="; + url = "https://download.moodle.org/stable${stableVersion}/${pname}-${version}.tgz"; + sha256 = "sha256-OPTImFgXuRK7bxK8KCan68/5D43qUOEK+TcC/9VQxu8="; }; phpConfig = writeText "config.php" '' diff --git a/pkgs/servers/web-apps/plausible/default.nix b/pkgs/servers/web-apps/plausible/default.nix index 40e7d878da29..50d71e422872 100644 --- a/pkgs/servers/web-apps/plausible/default.nix +++ b/pkgs/servers/web-apps/plausible/default.nix @@ -5,43 +5,35 @@ , glibcLocales , cacert , mkYarnModules +, fetchYarnDeps , nodejs -, fetchpatch , nixosTests }: let pname = "plausible"; - version = "1.3.0"; + version = "1.4.0"; src = fetchFromGitHub { owner = "plausible"; repo = "analytics"; rev = "v${version}"; - sha256 = "03lm1f29gwwixnhgjish5bhi3m73qyp71ns2sczdnwnbhrw61zps"; + sha256 = "1d31y7mwvml17w97dm5c4312n0ciq39kf4hz3g80hdzbbn72mi4q"; }; # TODO consider using `mix2nix` as soon as it supports git dependencies. mixFodDeps = beamPackages.fetchMixDeps { pname = "${pname}-deps"; inherit src version; - sha256 = "1x0if0ifk272vcqjlgf097pxsw13bhwy8vs0b89l0bssx1bzygsi"; - - # We need ecto 3.6 as this version checks whether the database exists before - # trying to create it. The creation attempt would always require super-user privileges - # and since 3.6 this isn't the case anymore. - patches = [ - ./ecto_sql-fix.patch - ./plausible-Bump-clickhouse_ecto-dependency-to-be-compatible-with-ecto-3.6.patch - ]; + sha256 = "1ikcskp4gvvdprl65x1spijdc8dz6klnrnkvgy2jbk0b3d7yn1v5"; }; yarnDeps = mkYarnModules { pname = "${pname}-yarn-deps"; inherit version; packageJSON = ./package.json; - yarnNix = ./yarn.nix; yarnLock = ./yarn.lock; + yarnNix = ./yarn.nix; preBuild = '' mkdir -p tmp/deps cp -r ${mixFodDeps}/phoenix tmp/deps/phoenix @@ -57,19 +49,6 @@ beamPackages.mixRelease { nativeBuildInputs = [ nodejs ]; - patches = [ - # Allow socket-authentication against postgresql. Upstream PR is - # https://github.com/plausible/analytics/pull/1052 - (fetchpatch { - url = "https://github.com/Ma27/analytics/commit/f2ee5892a6c3e1a861d69ed30cac43e05e9cd36f.patch"; - sha256 = "sha256-JvJ7xlGw+tHtWje+jiQChVC4KTyqqdq2q+MIcOv/k1o="; - }) - - # Ensure that `tzdata` doesn't write into its store-path - # https://github.com/plausible/analytics/pull/1096, but rebased onto 1.3.0 - ./tzdata-rebased.patch - ]; - passthru = { tests = { inherit (nixosTests) plausible; }; updateScript = ./update.sh; diff --git a/pkgs/servers/web-apps/plausible/ecto_sql-fix.patch b/pkgs/servers/web-apps/plausible/ecto_sql-fix.patch deleted file mode 100644 index 13c3f4ffc3c0..000000000000 --- a/pkgs/servers/web-apps/plausible/ecto_sql-fix.patch +++ /dev/null @@ -1,13 +0,0 @@ -diff --git a/mix.exs b/mix.exs -index f6e3b9a..67687d1 100644 ---- a/mix.exs -+++ b/mix.exs -@@ -52,7 +52,7 @@ defmodule Plausible.MixProject do - [ - {:bcrypt_elixir, "~> 2.0"}, - {:cors_plug, "~> 1.5"}, -- {:ecto_sql, "~> 3.0"}, -+ {:ecto_sql, "~> 3.6"}, - {:elixir_uuid, "~> 1.2"}, - {:gettext, "~> 0.11"}, - {:jason, "~> 1.0"}, diff --git a/pkgs/servers/web-apps/plausible/package.json b/pkgs/servers/web-apps/plausible/package.json index 63c88f647dc3..7d6daeca09f1 100644 --- a/pkgs/servers/web-apps/plausible/package.json +++ b/pkgs/servers/web-apps/plausible/package.json @@ -3,45 +3,55 @@ "license": "MIT", "scripts": { "deploy": "$(npm bin)/webpack --mode production", - "watch": "$(npm bin)/webpack --mode development --watch" + "watch": "$(npm bin)/webpack --mode development --watch", + "format": "$(npm bin)/prettier --write {css,js}/**", + "check-format": "$(npm bin)/prettier --check {css,js}/**", + "lint": "$(npm bin)/eslint js/**" }, "dependencies": { - "@babel/core": "^7.11.1", - "@babel/preset-env": "^7.11.0", - "@babel/preset-react": "^7.10.4", - "@tailwindcss/aspect-ratio": "^0.2.0", - "@tailwindcss/forms": "^0.2.1", - "@tailwindcss/typography": "^0.3.1", - "abortcontroller-polyfill": "^1.5.0", - "alpinejs": "^2.7.3", - "autoprefixer": "^9.8.6", - "babel-loader": "^8.1.0", - "chart.js": "^2.9.3", - "copy-webpack-plugin": "^6.0.3", - "css-loader": "^3.6.0", + "@babel/core": "^7.14.3", + "@babel/preset-env": "^7.14.4", + "@babel/preset-react": "^7.13.13", + "@headlessui/react": "^1.3.0", + "@heroicons/react": "^1.0.1", + "@juggle/resize-observer": "^3.3.1", + "@kunukn/react-collapse": "^2.2.9", + "@tailwindcss/aspect-ratio": "^0.2.1", + "@tailwindcss/forms": "^0.3.2", + "@tailwindcss/typography": "^0.4.1", + "abortcontroller-polyfill": "^1.7.3", + "alpinejs": "^2.8.2", + "autoprefixer": "^10.2.6", + "babel-loader": "^8.2.2", + "chart.js": "^3.3.2", + "classnames": "^2.3.1", + "copy-webpack-plugin": "^9.0.0", + "css-loader": "^5.2.6", + "css-minimizer-webpack-plugin": "^3.0.1", "datamaps": "^0.5.9", - "iframe-resizer": "^4.3.1", - "mini-css-extract-plugin": "^0.8.2", - "optimize-css-assets-webpack-plugin": "^5.0.3", + "debounce-promise": "^3.1.2", + "downshift": "^6.1.3", + "iframe-resizer": "^4.3.2", + "mini-css-extract-plugin": "^1.6.0", "phoenix": "file:../../tmp/deps/phoenix", "phoenix_html": "file:../../tmp/deps/phoenix_html", - "postcss": "^7.0.35", - "postcss-loader": "^4.0.4", + "postcss": "^8.3.0", + "postcss-loader": "^6.1.1", "react": "^16.13.1", "react-dom": "^16.13.1", - "react-flatpickr": "^3.10.5", + "react-flatpickr": "3.10.5", "react-flip-move": "^3.0.4", "react-router-dom": "^5.2.0", - "react-transition-group": "^4.4.1", - "tailwindcss": "2.0.1-compat", - "terser-webpack-plugin": "^4.2.3", - "url-search-params-polyfill": "^8.0.0", - "webpack": "4.39.2", - "webpack-cli": "^3.3.12" + "react-transition-group": "^4.4.2", + "tailwindcss": "^2.1.2", + "terser-webpack-plugin": "^5.1.2", + "url-search-params-polyfill": "^8.1.1", + "webpack": "5.38.1", + "webpack-cli": "^4.7.0" }, "devDependencies": { + "babel-eslint": "^10.1.0", "eslint": "^7.2.0", - "eslint-config-airbnb": "^18.2.0", "eslint-config-prettier": "^7.0.0", "eslint-plugin-import": "^2.22.1", "eslint-plugin-jsx-a11y": "^6.4.1", @@ -50,8 +60,9 @@ "eslint-plugin-react-hooks": "^4.2.0", "stylelint": "^13.8.0", "stylelint-config-prettier": "^8.0.2", - "stylelint-config-standard": "^20.0.0" + "stylelint-config-standard": "^20.0.0", + "webpack-bundle-analyzer": "^4.4.2" }, "name": "plausible", - "version": "v1.3.0" + "version": "v1.4.0" } diff --git a/pkgs/servers/web-apps/plausible/plausible-Bump-clickhouse_ecto-dependency-to-be-compatible-with-ecto-3.6.patch b/pkgs/servers/web-apps/plausible/plausible-Bump-clickhouse_ecto-dependency-to-be-compatible-with-ecto-3.6.patch deleted file mode 100644 index b8aa7319a217..000000000000 --- a/pkgs/servers/web-apps/plausible/plausible-Bump-clickhouse_ecto-dependency-to-be-compatible-with-ecto-3.6.patch +++ /dev/null @@ -1,26 +0,0 @@ -From 127a77882879e5cdf32d908ee3b1b6cbdc9e482e Mon Sep 17 00:00:00 2001 -From: =?UTF-8?q?Niklas=20Hamb=C3=BCchen?= <mail@nh2.me> -Date: Wed, 14 Jul 2021 01:20:29 +0200 -Subject: [PATCH] Bump `clickhouse_ecto` dependency to be compatible with ecto - 3.6 - ---- - mix.lock | 2 +- - 1 file changed, 1 insertion(+), 1 deletion(-) - -diff --git a/mix.lock b/mix.lock -index ecae8ac..d42af1e 100644 ---- a/mix.lock -+++ b/mix.lock -@@ -12,7 +12,7 @@ - "bunt": {:hex, :bunt, "0.2.0", "951c6e801e8b1d2cbe58ebbd3e616a869061ddadcc4863d0a2182541acae9a38", [:mix], [], "hexpm", "7af5c7e09fe1d40f76c8e4f9dd2be7cebd83909f31fee7cd0e9eadc567da8353"}, - "cachex": {:hex, :cachex, "3.3.0", "6f2ebb8f27491fe39121bd207c78badc499214d76c695658b19d6079beeca5c2", [:mix], [{:eternal, "~> 1.2", [hex: :eternal, repo: "hexpm", optional: false]}, {:jumper, "~> 1.0", [hex: :jumper, repo: "hexpm", optional: false]}, {:sleeplocks, "~> 1.1", [hex: :sleeplocks, repo: "hexpm", optional: false]}, {:unsafe, "~> 1.0", [hex: :unsafe, repo: "hexpm", optional: false]}], "hexpm", "d90e5ee1dde14cef33f6b187af4335b88748b72b30c038969176cd4e6ccc31a1"}, - "certifi": {:hex, :certifi, "2.6.1", "dbab8e5e155a0763eea978c913ca280a6b544bfa115633fa20249c3d396d9493", [:rebar3], [], "hexpm", "524c97b4991b3849dd5c17a631223896272c6b0af446778ba4675a1dff53bb7e"}, -- "clickhouse_ecto": {:git, "https://github.com/plausible/clickhouse_ecto.git", "b30ccc93a4101a25ff0bba92113e18d8a9a8b28e", []}, -+ "clickhouse_ecto": {:git, "https://github.com/plausible/clickhouse_ecto.git", "1969f14ecef7c357b2bd8bdc3e566234269de58c", []}, - "clickhousex": {:git, "https://github.com/plausible/clickhousex", "0832dd4b1af1f0eba1d1018c231bf0d8d281f031", []}, - "combine": {:hex, :combine, "0.10.0", "eff8224eeb56498a2af13011d142c5e7997a80c8f5b97c499f84c841032e429f", [:mix], [], "hexpm", "1b1dbc1790073076580d0d1d64e42eae2366583e7aecd455d1215b0d16f2451b"}, - "comeonin": {:hex, :comeonin, "5.3.2", "5c2f893d05c56ae3f5e24c1b983c2d5dfb88c6d979c9287a76a7feb1e1d8d646", [:mix], [], "hexpm", "d0993402844c49539aeadb3fe46a3c9bd190f1ecf86b6f9ebd71957534c95f04"}, --- -2.31.1 - diff --git a/pkgs/servers/web-apps/plausible/tzdata-rebased.patch b/pkgs/servers/web-apps/plausible/tzdata-rebased.patch deleted file mode 100644 index 462ab3cb6d6e..000000000000 --- a/pkgs/servers/web-apps/plausible/tzdata-rebased.patch +++ /dev/null @@ -1,21 +0,0 @@ -diff --git a/config/runtime.exs b/config/runtime.exs -index 7c9cc14..8facd05 100644 ---- a/config/runtime.exs -+++ b/config/runtime.exs -@@ -15,9 +15,7 @@ end - base_url = URI.parse(base_url) - - if base_url.scheme not in ["http", "https"] do -- raise "BASE_URL must start with `http` or `https`. Currently configured as `#{ -- System.get_env("BASE_URL") -- }`" -+ raise "BASE_URL must start with `http` or `https`. Currently configured as `#{System.get_env("BASE_URL")}`" - end - - secret_key_base = -@@ -300,3 +298,5 @@ if appsignal_api_key do - env: env, - active: true - end -+ -+config :tzdata, :data_dir, System.get_env("TZDATA_DIR", "priv") diff --git a/pkgs/servers/web-apps/plausible/update.sh b/pkgs/servers/web-apps/plausible/update.sh index 3abf3ee616fc..74387212d261 100755 --- a/pkgs/servers/web-apps/plausible/update.sh +++ b/pkgs/servers/web-apps/plausible/update.sh @@ -6,9 +6,6 @@ # # * Add correct `name`/`version` field to `package.json`, otherwise `yarn2nix` fails to # find required dependencies. -# * Keep `tailwindcss` on version 2.0.1-compat (on `yarn` it will be upgraded due to the `^`). -# This is needed to make sure the entire build still works with `postcss-7` (needed -# by plausible). # * Adjust `file:`-dependencies a bit for the structure inside a Nix build. # * Update hashes for the tarball & the fixed-output drv with all `mix`-dependencies. # * Generate `yarn.lock` & `yarn.nix` in a temporary directory. @@ -29,10 +26,9 @@ fi SRC="https://raw.githubusercontent.com/plausible/analytics/${latest}" package_json="$(curl -qf "$SRC/assets/package.json")" -export fixed_tailwind_version="$(jq '.dependencies.tailwindcss' -r <<< "$package_json" | sed -e 's,^^,,g')" echo "$package_json" \ - | jq '. + {"name":"plausible","version": $ENV.latest} | .dependencies.tailwindcss = $ENV.fixed_tailwind_version' \ + | jq '. + {"name":"plausible","version": $ENV.latest}' \ | sed -e 's,../deps/,../../tmp/deps/,g' \ > $dir/package.json @@ -58,7 +54,6 @@ cp -r "$(nix-build -A plausible.mixFodDeps)" "$tmp_setup_dir/deps" chmod -R u+rwx "$tmp_setup_dir" pushd $tmp_setup_dir/assets -jq < package.json '.dependencies.tailwindcss = "'"$fixed_tailwind_version"'"' | sponge package.json yarn yarn2nix > "$dir/yarn.nix" cp yarn.lock "$dir/yarn.lock" diff --git a/pkgs/servers/web-apps/plausible/yarn.lock b/pkgs/servers/web-apps/plausible/yarn.lock index 273ff3d42180..9481f797e592 100644 --- a/pkgs/servers/web-apps/plausible/yarn.lock +++ b/pkgs/servers/web-apps/plausible/yarn.lock @@ -9,32 +9,32 @@ dependencies: "@babel/highlight" "^7.10.4" -"@babel/code-frame@^7.0.0", "@babel/code-frame@^7.12.13": - version "7.12.13" - resolved "https://registry.yarnpkg.com/@babel/code-frame/-/code-frame-7.12.13.tgz#dcfc826beef65e75c50e21d3837d7d95798dd658" - integrity sha512-HV1Cm0Q3ZrpCR93tkWOYiuYIgLxZXZFVG2VgK+MBWjUqZTundupbfx2aXarXuw5Ko5aMcjtJgbSs4vUGBS5v6g== +"@babel/code-frame@^7.0.0", "@babel/code-frame@^7.16.0": + version "7.16.0" + resolved "https://registry.yarnpkg.com/@babel/code-frame/-/code-frame-7.16.0.tgz#0dfc80309beec8411e65e706461c408b0bb9b431" + integrity sha512-IF4EOMEV+bfYwOmNxGzSnjR2EmQod7f1UXOpZM3l4i4o4QNwzjtJAu/HxdjHq0aYBvdqMuQEY1eg0nqW9ZPORA== dependencies: - "@babel/highlight" "^7.12.13" + "@babel/highlight" "^7.16.0" -"@babel/compat-data@^7.13.11", "@babel/compat-data@^7.14.4": - version "7.14.4" - resolved "https://registry.yarnpkg.com/@babel/compat-data/-/compat-data-7.14.4.tgz#45720fe0cecf3fd42019e1d12cc3d27fadc98d58" - integrity sha512-i2wXrWQNkH6JplJQGn3Rd2I4Pij8GdHkXwHMxm+zV5YG/Jci+bCNrWZEWC4o+umiDkRrRs4dVzH3X4GP7vyjQQ== +"@babel/compat-data@^7.13.11", "@babel/compat-data@^7.16.0": + version "7.16.0" + resolved "https://registry.yarnpkg.com/@babel/compat-data/-/compat-data-7.16.0.tgz#ea269d7f78deb3a7826c39a4048eecda541ebdaa" + integrity sha512-DGjt2QZse5SGd9nfOSqO4WLJ8NN/oHkijbXbPrxuoJO3oIPJL3TciZs9FX+cOHNiY9E9l0opL8g7BmLe3T+9ew== -"@babel/core@>=7.9.0", "@babel/core@^7.11.1": - 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version "4.1.0" - resolved "https://registry.yarnpkg.com/ansi-regex/-/ansi-regex-4.1.0.tgz#8b9f8f08cf1acb843756a839ca8c7e3168c51997" - integrity sha512-1apePfXM1UOSqw0o9IiFAovVz9M5S1Dg+4TrDwfMewQ6p/rmMueb7tWZjQ1rx4Loy1ArBggoqGpfqqdI4rondg== +ansi-regex@^5.0.1: + version "5.0.1" + resolved "https://registry.yarnpkg.com/ansi-regex/-/ansi-regex-5.0.1.tgz#082cb2c89c9fe8659a311a53bd6a4dc5301db304" + integrity sha512-quJQXlTSUGL2LH9SUXo8VwsY4soanhgo6LNSm84E1LBcE8s3O0wpdiRzyR9z/ZZJMlMWv37qOOb9pdJlMUEKFQ== -ansi-regex@^5.0.0: - version "5.0.0" - resolved "https://registry.yarnpkg.com/ansi-regex/-/ansi-regex-5.0.0.tgz#388539f55179bf39339c81af30a654d69f87cb75" - integrity sha512-bY6fj56OUQ0hU1KjFNDQuJFezqKdrAyFdIevADiqrWHwSlbmBNMHp5ak2f40Pm8JTFyM2mqxkG6ngkHO11f/lg== - -ansi-styles@^3.2.0, ansi-styles@^3.2.1: +ansi-styles@^3.2.1: version "3.2.1" resolved "https://registry.yarnpkg.com/ansi-styles/-/ansi-styles-3.2.1.tgz#41fbb20243e50b12be0f04b8dedbf07520ce841d" integrity sha512-VT0ZI6kZRdTh8YyJw3SMbYm/u+NqfsAxEpWO0Pf9sq8/e94WxxOpPKx9FR1FlyCtOVDNOQ+8ntlqFxiRc+r5qA== @@ -1337,15 +1384,7 @@ ansi-styles@^4.0.0, ansi-styles@^4.1.0: dependencies: color-convert "^2.0.1" -anymatch@^2.0.0: - version "2.0.0" - resolved "https://registry.yarnpkg.com/anymatch/-/anymatch-2.0.0.tgz#bcb24b4f37934d9aa7ac17b4adaf89e7c76ef2eb" - integrity sha512-5teOsQWABXHHBFP9y3skS5P3d/WfWXpv3FUpy+LorMrNYaT9pI4oLMQX7jzQ2KklNpGpWHzdCXTDT2Y3XGlZBw== - dependencies: - micromatch "^3.1.4" - normalize-path "^2.1.1" - -anymatch@~3.1.1: +anymatch@~3.1.2: version "3.1.2" resolved "https://registry.yarnpkg.com/anymatch/-/anymatch-3.1.2.tgz#c0557c096af32f106198f4f4e2a383537e378716" integrity sha512-P43ePfOAIupkguHUycrc4qJ9kz8ZiuOUijaETwX7THt0Y/GNK7v0aa8rY816xWjZ7rJdA5XdMcpVFTKMq+RvWg== @@ -1353,10 +1392,10 @@ anymatch@~3.1.1: normalize-path "^3.0.0" picomatch "^2.0.4" -aproba@^1.1.1: - version "1.2.0" - resolved "https://registry.yarnpkg.com/aproba/-/aproba-1.2.0.tgz#6802e6264efd18c790a1b0d517f0f2627bf2c94a" - integrity sha512-Y9J6ZjXtoYh8RnXVCMOU/ttDmk1aBjunq9vO0ta5x85WDQiQfUF9sIPBITdbiiIVcBo03Hi3jMxigBtsddlXRw== +arg@^5.0.1: + version "5.0.1" + resolved "https://registry.yarnpkg.com/arg/-/arg-5.0.1.tgz#eb0c9a8f77786cad2af8ff2b862899842d7b6adb" + integrity sha512-e0hDa9H2Z9AwFkk2qDlwhoMYE4eToKarchkQHovNdLTCYMHZHeRjI71crOh+dio4K6u1IcwubQqo79Ga4CyAQA== argparse@^1.0.7: version "1.0.10" @@ -1373,89 +1412,45 @@ aria-query@^4.2.2: "@babel/runtime" "^7.10.2" "@babel/runtime-corejs3" "^7.10.2" -arr-diff@^4.0.0: - 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es-abstract "^1.18.0-next.2" + es-abstract "^1.19.1" get-intrinsic "^1.1.1" - is-string "^1.0.5" + is-string "^1.0.7" array-union@^2.1.0: version "2.1.0" resolved "https://registry.yarnpkg.com/array-union/-/array-union-2.1.0.tgz#b798420adbeb1de828d84acd8a2e23d3efe85e8d" integrity sha512-HGyxoOTYUyCM6stUe6EJgnd4EoewAI7zMdfqO+kGjnlZmBDz/cR5pf8r/cR4Wq60sL/p0IkcjUEEPwS3GFrIyw== -array-unique@^0.3.2: - version "0.3.2" - resolved "https://registry.yarnpkg.com/array-unique/-/array-unique-0.3.2.tgz#a894b75d4bc4f6cd679ef3244a9fd8f46ae2d428" - integrity sha1-qJS3XUvE9s1nnvMkSp/Y9Gri1Cg= - -array.prototype.flat@^1.2.4: - version "1.2.4" - resolved "https://registry.yarnpkg.com/array.prototype.flat/-/array.prototype.flat-1.2.4.tgz#6ef638b43312bd401b4c6199fdec7e2dc9e9a123" - integrity sha512-4470Xi3GAPAjZqFcljX2xzckv1qeKPizoNkiS0+O4IoPR2ZNpcjE0pkhdihlDouK+x6QOast26B4Q/O9DJnwSg== +array.prototype.flat@^1.2.5: + version "1.2.5" + resolved "https://registry.yarnpkg.com/array.prototype.flat/-/array.prototype.flat-1.2.5.tgz#07e0975d84bbc7c48cd1879d609e682598d33e13" + integrity sha512-KaYU+S+ndVqyUnignHftkwc58o3uVU1jzczILJ1tN2YaIZpFIKBiP/x/j97E5MVPsaCloPbqWLB/8qCTVvT2qg== dependencies: - 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integrity sha1-s2nW+128E+7PUk+RsHD+7cNXzzQ= + version "0.1.4" + resolved "https://registry.yarnpkg.com/deep-is/-/deep-is-0.1.4.tgz#a6f2dce612fadd2ef1f519b73551f17e85199831" + integrity sha512-oIPzksmTg4/MriiaYGO+okXDT7ztn/w3Eptv/+gSIdMdKsJo0u4CfYNFJPy+4SKMuCqGw2wxnA+URMg3t8a/bQ== define-properties@^1.1.3: version "1.1.3" @@ -2550,46 +2132,11 @@ define-properties@^1.1.3: dependencies: object-keys "^1.0.12" -define-property@^0.2.5: - version "0.2.5" - resolved "https://registry.yarnpkg.com/define-property/-/define-property-0.2.5.tgz#c35b1ef918ec3c990f9a5bc57be04aacec5c8116" - integrity sha1-w1se+RjsPJkPmlvFe+BKrOxcgRY= - dependencies: - is-descriptor "^0.1.0" - -define-property@^1.0.0: - version "1.0.0" - resolved "https://registry.yarnpkg.com/define-property/-/define-property-1.0.0.tgz#769ebaaf3f4a63aad3af9e8d304c9bbe79bfb0e6" - integrity sha1-dp66rz9KY6rTr56NMEybvnm/sOY= - dependencies: - is-descriptor "^1.0.0" - -define-property@^2.0.2: - version "2.0.2" - resolved "https://registry.yarnpkg.com/define-property/-/define-property-2.0.2.tgz#d459689e8d654ba77e02a817f8710d702cb16e9d" - 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version "5.3.0" - resolved "https://registry.yarnpkg.com/dot-prop/-/dot-prop-5.3.0.tgz#90ccce708cd9cd82cc4dc8c3ddd9abdd55b20e88" - integrity sha512-QM8q3zDe58hqUqjraQOmzZ1LIH9SWQJTlEKCH4kJ2oQvLZk7RbQXvtDM2XEq3fwkV9CCvvH4LA0AV+ogFsBM2Q== +domutils@^2.6.0: + version "2.8.0" + resolved "https://registry.yarnpkg.com/domutils/-/domutils-2.8.0.tgz#4437def5db6e2d1f5d6ee859bd95ca7d02048135" + integrity sha512-w96Cjofp72M5IIhpjgobBimYEfoPjx1Vx0BSX9P30WBdZW2WIKU0T1Bd0kz2eNZ9ikjKgHbEyKx8BB6H1L3h3A== dependencies: - is-obj "^2.0.0" + dom-serializer "^1.0.1" + domelementtype "^2.2.0" + domhandler "^4.2.0" + +downshift@^6.1.3: + version "6.1.7" + resolved "https://registry.yarnpkg.com/downshift/-/downshift-6.1.7.tgz#fdb4c4e4f1d11587985cd76e21e8b4b3fa72e44c" + integrity sha512-cVprZg/9Lvj/uhYRxELzlu1aezRcgPWBjTvspiGTVEU64gF5pRdSRKFVLcxqsZC637cLAGMbL40JavEfWnqgNg== + dependencies: + "@babel/runtime" "^7.14.8" + compute-scroll-into-view "^1.0.17" + prop-types "^15.7.2" + react-is "^17.0.2" + tslib "^2.3.0" duplexer2@~0.1.4: version "0.1.4" @@ -2694,38 +2261,15 @@ duplexer2@~0.1.4: dependencies: readable-stream "^2.0.2" -duplexify@^3.4.2, duplexify@^3.6.0: - 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is-callable "^1.2.3" + internal-slot "^1.0.3" + is-callable "^1.2.4" is-negative-zero "^2.0.1" - is-regex "^1.1.3" - is-string "^1.0.6" - object-inspect "^1.10.3" + is-regex "^1.1.4" + is-shared-array-buffer "^1.0.1" + is-string "^1.0.7" + is-weakref "^1.0.1" + object-inspect "^1.11.0" object-keys "^1.1.1" object.assign "^4.1.2" string.prototype.trimend "^1.0.4" string.prototype.trimstart "^1.0.4" unbox-primitive "^1.0.1" +es-module-lexer@^0.4.0: + version "0.4.1" + resolved "https://registry.yarnpkg.com/es-module-lexer/-/es-module-lexer-0.4.1.tgz#dda8c6a14d8f340a24e34331e0fab0cb50438e0e" + integrity sha512-ooYciCUtfw6/d2w56UVeqHPcoCFAiJdz5XOkYpv/Txl1HMUozpXjz/2RIQgqwKdXNDPSF1W7mJCFse3G+HDyAA== + es-to-primitive@^1.2.1: version "1.2.1" resolved "https://registry.yarnpkg.com/es-to-primitive/-/es-to-primitive-1.2.1.tgz#e55cd4c9cdc188bcefb03b366c736323fc5c898a" @@ -2859,65 +2402,46 @@ escodegen@~1.9.0: optionalDependencies: source-map "~0.6.1" -eslint-config-airbnb-base@^14.2.1: - version "14.2.1" - 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tsconfig-paths "^3.9.0" + tsconfig-paths "^3.11.0" eslint-plugin-jsx-a11y@^6.4.1: version "6.4.1" @@ -2937,9 +2461,9 @@ eslint-plugin-jsx-a11y@^6.4.1: language-tags "^1.0.5" eslint-plugin-prettier@^3.3.0: - version "3.4.0" - resolved "https://registry.yarnpkg.com/eslint-plugin-prettier/-/eslint-plugin-prettier-3.4.0.tgz#cdbad3bf1dbd2b177e9825737fe63b476a08f0c7" - integrity sha512-UDK6rJT6INSfcOo545jiaOwB701uAIt2/dR7WnFQoGCVl1/EMqdANBmwUaqqQ45aXprsTGzSa39LI1PyuRBxxw== + version "3.4.1" + resolved "https://registry.yarnpkg.com/eslint-plugin-prettier/-/eslint-plugin-prettier-3.4.1.tgz#e9ddb200efb6f3d05ffe83b1665a716af4a387e5" + integrity sha512-htg25EUYUeIhKHXjOinK4BgCcDwtLHjqaxCDsMy5nbnUMkKFvIhMVCp+5GFUXQ4Nr8lBsPqtGAqBenbpFqAA2g== dependencies: prettier-linter-helpers "^1.0.0" @@ -2949,32 +2473,26 @@ eslint-plugin-react-hooks@^4.2.0: integrity sha512-623WEiZJqxR7VdxFCKLI6d6LLpwJkGPYKODnkH3D7WpOG5KM8yWueBd8TLsNAetEJNF5iJmolaAKO3F8yzyVBQ== eslint-plugin-react@^7.21.5: - version "7.23.2" - 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resolved "https://registry.yarnpkg.com/eslint-scope/-/eslint-scope-4.0.3.tgz#ca03833310f6889a3264781aa82e63eb9cfe7848" - integrity sha512-p7VutNr1O/QrxysMo3E45FjYDTeXBy0iTltPFNSqKAIfjDSXC+4dj+qfyuD8bfAXrW/y6lW3O76VaYNPKfpKrg== - dependencies: - esrecurse "^4.1.0" - estraverse "^4.1.1" - -eslint-scope@^5.1.1: +eslint-scope@5.1.1, eslint-scope@^5.1.1: version "5.1.1" resolved "https://registry.yarnpkg.com/eslint-scope/-/eslint-scope-5.1.1.tgz#e786e59a66cb92b3f6c1fb0d508aab174848f48c" integrity sha512-2NxwbF/hZ0KpepYN0cNbo+FN6XoK7GaHlQhgx/hIZl6Va0bF45RQOOwhLIy8lQDbuCiadSLCBnH2CFYquit5bw== @@ -2989,7 +2507,7 @@ eslint-utils@^2.1.0: dependencies: eslint-visitor-keys "^1.1.0" -eslint-visitor-keys@^1.1.0, eslint-visitor-keys@^1.3.0: +eslint-visitor-keys@^1.0.0, eslint-visitor-keys@^1.1.0, eslint-visitor-keys@^1.3.0: version "1.3.0" resolved "https://registry.yarnpkg.com/eslint-visitor-keys/-/eslint-visitor-keys-1.3.0.tgz#30ebd1ef7c2fdff01c3a4f151044af25fab0523e" integrity sha512-6J72N8UNa462wa/KFODt/PJ3IU60SDpC3QXC1Hjc1BXXpfL2C9R5+AU7jhe0F6GREqVMh4Juu+NY7xn+6dipUQ== @@ -3000,12 +2518,13 @@ eslint-visitor-keys@^2.0.0: integrity sha512-0rSmRBzXgDzIsD6mGdJgevzgezI534Cer5L/vyMX0kHzT/jiB43jRhd9YUlMGYLQy2zprNmoT8qasCGtY+QaKw== eslint@^7.2.0: - 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integrity sha512-ffdmosjA807y7+lA1NM0jELARVmYul/715xiILEjo3hBLPTcirgQNnXECn5g3mtR8TOLCVbkfua1Hpen25/Xcg== +globby@^11.0.3: + version "11.0.4" + resolved "https://registry.yarnpkg.com/globby/-/globby-11.0.4.tgz#2cbaff77c2f2a62e71e9b2813a67b97a3a3001a5" + integrity sha512-9O4MVG9ioZJ08ffbcyVYyLOJLk5JQ688pJ4eMGLpdWLHq/Wr1D9BlriLQyL0E+jbkuePVZXYFj47QM/v093wHg== dependencies: array-union "^2.1.0" dir-glob "^3.0.1" @@ -3545,10 +2906,17 @@ gonzales-pe@^4.3.0: dependencies: minimist "^1.2.5" -graceful-fs@^4.1.11, graceful-fs@^4.1.15, graceful-fs@^4.1.2, graceful-fs@^4.1.6, graceful-fs@^4.2.0: - version "4.2.6" - resolved "https://registry.yarnpkg.com/graceful-fs/-/graceful-fs-4.2.6.tgz#ff040b2b0853b23c3d31027523706f1885d76bee" - integrity sha512-nTnJ528pbqxYanhpDYsi4Rd8MAeaBA67+RZ10CM1m3bTAVFEDcd5AuA4a6W5YkGZ1iNXHzZz8T6TBKLeBuNriQ== +graceful-fs@^4.1.2, graceful-fs@^4.1.6, graceful-fs@^4.2.0, graceful-fs@^4.2.4: + version "4.2.8" + resolved "https://registry.yarnpkg.com/graceful-fs/-/graceful-fs-4.2.8.tgz#e412b8d33f5e006593cbd3cee6df9f2cebbe802a" + integrity sha512-qkIilPUYcNhJpd33n0GBXTB1MMPp14TxEsEs0pTrsSVucApsYzW5V+Q8Qxhik6KU3evy+qkAAowTByymK0avdg== + +gzip-size@^6.0.0: + version "6.0.0" + resolved "https://registry.yarnpkg.com/gzip-size/-/gzip-size-6.0.0.tgz#065367fd50c239c0671cbcbad5be3e2eeb10e462" + integrity sha512-ax7ZYomf6jqPTQ4+XCpUGyXKHk5WweS+e05MBO4/y3WJ5RkmPXNKvX+bx1behVILVwr6JSQvZAku021CHPXG3Q== + dependencies: + duplexer "^0.1.2" hard-rejection@^2.1.0: version "2.1.0" @@ -3575,61 +2943,20 @@ has-symbols@^1.0.1, has-symbols@^1.0.2: resolved "https://registry.yarnpkg.com/has-symbols/-/has-symbols-1.0.2.tgz#165d3070c00309752a1236a479331e3ac56f1423" integrity sha512-chXa79rL/UC2KlX17jo3vRGz0azaWEx5tGqZg5pO3NUyEJVB17dMruQlzCCOfUvElghKcm5194+BCRvi2Rv/Gw== -has-value@^0.3.1: - 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version "3.0.0" - resolved "https://registry.yarnpkg.com/last-call-webpack-plugin/-/last-call-webpack-plugin-3.0.0.tgz#9742df0e10e3cf46e5c0381c2de90d3a7a2d7555" - integrity sha512-7KI2l2GIZa9p2spzPIVZBYyNKkN+e/SQPpnjlTiPhdbDW3F86tdKKELxKpzJ5sgU19wQWsACULZmpTPYHeWO5w== - dependencies: - lodash "^4.17.5" - webpack-sources "^1.1.0" - levn@^0.4.1: version "0.4.1" resolved "https://registry.yarnpkg.com/levn/-/levn-0.4.1.tgz#ae4562c007473b932a6200d403268dd2fffc6ade" @@ -4321,27 +3489,22 @@ levn@~0.3.0: prelude-ls "~1.1.2" type-check "~0.3.2" +lilconfig@^2.0.3: + version "2.0.3" + resolved "https://registry.yarnpkg.com/lilconfig/-/lilconfig-2.0.3.tgz#68f3005e921dafbd2a2afb48379986aa6d2579fd" + integrity sha512-EHKqr/+ZvdKCifpNrJCKxBTgk5XupZA3y/aCPY9mxfgBzmgh93Mt/WqjjQ38oMxXuvDokaKiM3lAgvSH2sjtHg== + lines-and-columns@^1.1.6: version "1.1.6" resolved "https://registry.yarnpkg.com/lines-and-columns/-/lines-and-columns-1.1.6.tgz#1c00c743b433cd0a4e80758f7b64a57440d9ff00" integrity sha1-HADHQ7QzzQpOgHWPe2SldEDZ/wA= -load-json-file@^4.0.0: - 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version "2.0.0" - resolved "https://registry.yarnpkg.com/loader-utils/-/loader-utils-2.0.0.tgz#e4cace5b816d425a166b5f097e10cd12b36064b0" - integrity sha512-rP4F0h2RaWSvPEkD7BLDFQnvSf+nK+wr3ESUjNTyAGobqrijmW92zc+SO6d4p4B1wh7+B/Jg1mkQe5NYUEHtHQ== + version "2.0.1" + resolved "https://registry.yarnpkg.com/loader-utils/-/loader-utils-2.0.1.tgz#3b8d4386f42378d6434d32d7bc08e7a52d39575e" + integrity sha512-g4miPa9uUrZz4iElkaVJgDFwKJGh8aQGM7pUL4ejXl6cu7kSb30seQOVGNMP6sW8j7DW77X68hJZ+GM7UGhXeQ== dependencies: big.js "^5.2.2" emojis-list "^3.0.0" @@ -4367,14 +3530,6 @@ locate-path@^2.0.0: p-locate "^2.0.0" path-exists "^3.0.0" -locate-path@^3.0.0: - version "3.0.0" - resolved "https://registry.yarnpkg.com/locate-path/-/locate-path-3.0.0.tgz#dbec3b3ab759758071b58fe59fc41871af21400e" - integrity sha512-7AO748wWnIhNqAuaty2ZWHkQHRSNfPVIsPIfwEOWO22AmaoVrWavlOcMR5nzTLNYvp36X220/maaRsrec1G65A== - dependencies: - p-locate "^3.0.0" - path-exists "^3.0.0" - locate-path@^5.0.0: version "5.0.0" resolved "https://registry.yarnpkg.com/locate-path/-/locate-path-5.0.0.tgz#1afba396afd676a6d42504d0a67a3a7eb9f62aa0" @@ -4382,6 +3537,11 @@ locate-path@^5.0.0: dependencies: p-locate "^4.1.0" +lodash.castarray@^4.4.0: + version "4.4.0" + resolved "https://registry.yarnpkg.com/lodash.castarray/-/lodash.castarray-4.4.0.tgz#c02513515e309daddd4c24c60cfddcf5976d9115" + integrity sha1-wCUTUV4wna3dTCTGDP3c9ZdtkRU= + lodash.clonedeep@^4.5.0: version "4.5.0" resolved "https://registry.yarnpkg.com/lodash.clonedeep/-/lodash.clonedeep-4.5.0.tgz#e23f3f9c4f8fbdde872529c1071857a086e5ccef" @@ -4392,6 +3552,11 @@ lodash.debounce@^4.0.8: resolved "https://registry.yarnpkg.com/lodash.debounce/-/lodash.debounce-4.0.8.tgz#82d79bff30a67c4005ffd5e2515300ad9ca4d7af" integrity sha1-gteb/zCmfEAF/9XiUVMArZyk168= +lodash.isplainobject@^4.0.6: + version "4.0.6" + resolved "https://registry.yarnpkg.com/lodash.isplainobject/-/lodash.isplainobject-4.0.6.tgz#7c526a52d89b45c45cc690b88163be0497f550cb" + integrity sha1-fFJqUtibRcRcxpC4gWO+BJf1UMs= + lodash.memoize@^4.1.2: version "4.1.2" resolved "https://registry.yarnpkg.com/lodash.memoize/-/lodash.memoize-4.1.2.tgz#bcc6c49a42a2840ed997f323eada5ecd182e0bfe" @@ -4402,10 +3567,10 @@ lodash.merge@^4.6.2: resolved "https://registry.yarnpkg.com/lodash.merge/-/lodash.merge-4.6.2.tgz#558aa53b43b661e1925a0afdfa36a9a1085fe57a" integrity sha512-0KpjqXRVvrYyCsX1swR/XTK0va6VQkQM6MNo7PqW77ByjAhoARA8EfrP1N4+KlKj8YS0ZUCtRT/YUuhyYDujIQ== -lodash.toarray@^4.4.0: - version "4.4.0" - resolved "https://registry.yarnpkg.com/lodash.toarray/-/lodash.toarray-4.4.0.tgz#24c4bfcd6b2fba38bfd0594db1179d8e9b656561" - integrity sha1-JMS/zWsvuji/0FlNsRedjptlZWE= +lodash.topath@^4.5.2: + version "4.5.2" + resolved "https://registry.yarnpkg.com/lodash.topath/-/lodash.topath-4.5.2.tgz#3616351f3bba61994a0931989660bd03254fd009" + integrity sha1-NhY1Hzu6YZlKCTGYlmC9AyVP0Ak= lodash.truncate@^4.4.2: version "4.4.2" @@ -4417,7 +3582,7 @@ lodash.uniq@^4.5.0: resolved "https://registry.yarnpkg.com/lodash.uniq/-/lodash.uniq-4.5.0.tgz#d0225373aeb652adc1bc82e4945339a842754773" integrity sha1-0CJTc662Uq3BvILklFM5qEJ1R3M= -lodash@^4.17.20, lodash@^4.17.21, lodash@^4.17.5: +lodash@^4.17.20, lodash@^4.17.21: version "4.17.21" resolved "https://registry.yarnpkg.com/lodash/-/lodash-4.17.21.tgz#679591c564c3bffaae8454cf0b3df370c3d6911c" integrity sha512-v2kDEe57lecTulaDIuNTPy3Ry4gLGJ6Z1O3vE1krgXZNrsQ+LFTGHVxVjcXPs17LhbZVGedAJv8XZ1tvj5FvSg== @@ -4442,13 +3607,6 @@ loose-envify@^1.1.0, loose-envify@^1.2.0, loose-envify@^1.3.1, loose-envify@^1.4 dependencies: js-tokens "^3.0.0 || ^4.0.0" -lru-cache@^5.1.1: - version "5.1.1" - resolved "https://registry.yarnpkg.com/lru-cache/-/lru-cache-5.1.1.tgz#1da27e6710271947695daf6848e847f01d84b920" - integrity sha512-KpNARQA3Iwv+jTA0utUVVbrh+Jlrr1Fv0e56GGzAFOXN7dk/FviaDW8LHmK52DlcH4WP2n6gI8vN1aesBFgo9w== - dependencies: - yallist "^3.0.2" - lru-cache@^6.0.0: version "6.0.0" resolved "https://registry.yarnpkg.com/lru-cache/-/lru-cache-6.0.0.tgz#6d6fe6570ebd96aaf90fcad1dafa3b2566db3a94" @@ -4463,14 +3621,6 @@ magic-string@^0.22.4: dependencies: vlq "^0.2.2" -make-dir@^2.0.0: - version "2.1.0" - resolved "https://registry.yarnpkg.com/make-dir/-/make-dir-2.1.0.tgz#5f0310e18b8be898cc07009295a30ae41e91e6f5" - integrity sha512-LS9X+dc8KLxXCb8dni79fLIIUA5VyZoyjSMCwTluaXA0o27cCK0bhXkpgw+sTXVpPy/lSO57ilRixqk0vDmtRA== - dependencies: - pify "^4.0.1" - semver "^5.6.0" - make-dir@^3.0.2, make-dir@^3.1.0: version "3.1.0" resolved "https://registry.yarnpkg.com/make-dir/-/make-dir-3.1.0.tgz#415e967046b3a7f1d185277d84aa58203726a13f" @@ -4478,47 +3628,21 @@ make-dir@^3.0.2, make-dir@^3.1.0: dependencies: semver "^6.0.0" -mamacro@^0.0.3: - version "0.0.3" - resolved "https://registry.yarnpkg.com/mamacro/-/mamacro-0.0.3.tgz#ad2c9576197c9f1abf308d0787865bd975a3f3e4" - integrity sha512-qMEwh+UujcQ+kbz3T6V+wAmO2U8veoq2w+3wY8MquqwVA3jChfwY+Tk52GZKDfACEPjuZ7r2oJLejwpt8jtwTA== - -map-cache@^0.2.2: - version "0.2.2" - resolved "https://registry.yarnpkg.com/map-cache/-/map-cache-0.2.2.tgz#c32abd0bd6525d9b051645bb4f26ac5dc98a0dbf" - integrity sha1-wyq9C9ZSXZsFFkW7TyasXcmKDb8= - map-obj@^1.0.0: version "1.0.1" resolved "https://registry.yarnpkg.com/map-obj/-/map-obj-1.0.1.tgz#d933ceb9205d82bdcf4886f6742bdc2b4dea146d" integrity sha1-2TPOuSBdgr3PSIb2dCvcK03qFG0= map-obj@^4.0.0: - version "4.2.1" - resolved "https://registry.yarnpkg.com/map-obj/-/map-obj-4.2.1.tgz#e4ea399dbc979ae735c83c863dd31bdf364277b7" - integrity sha512-+WA2/1sPmDj1dlvvJmB5G6JKfY9dpn7EVBUL06+y6PoljPkh+6V1QihwxNkbcGxCRjt2b0F9K0taiCuo7MbdFQ== - -map-visit@^1.0.0: - version "1.0.0" - resolved "https://registry.yarnpkg.com/map-visit/-/map-visit-1.0.0.tgz#ecdca8f13144e660f1b5bd41f12f3479d98dfb8f" - integrity sha1-7Nyo8TFE5mDxtb1B8S80edmN+48= - dependencies: - object-visit "^1.0.0" + version "4.3.0" + resolved "https://registry.yarnpkg.com/map-obj/-/map-obj-4.3.0.tgz#9304f906e93faae70880da102a9f1df0ea8bb05a" + integrity sha512-hdN1wVrZbb29eBGiGjJbeP8JbKjq1urkHJ/LIP/NY48MZ1QVXUsQBV1G1zvYFHn1XE06cwjBsOI2K3Ulnj1YXQ== mathml-tag-names@^2.1.3: version "2.1.3" resolved "https://registry.yarnpkg.com/mathml-tag-names/-/mathml-tag-names-2.1.3.tgz#4ddadd67308e780cf16a47685878ee27b736a0a3" integrity sha512-APMBEanjybaPzUrfqU0IMU5I0AswKMH7k8OTLs0vvV4KZpExkTkY87nR/zpbuTPj+gARop7aGUbl11pnDfW6xg== -md5.js@^1.3.4: - version "1.3.5" - resolved "https://registry.yarnpkg.com/md5.js/-/md5.js-1.3.5.tgz#b5d07b8e3216e3e27cd728d72f70d1e6a342005f" - integrity sha512-xitP+WxNPcTTOgnTJcrhM0xvdPepipPSf3I8EIpGKeFLjt3PlJLIDG3u8EX53ZIubkb+5U2+3rELYpEhHhzdkg== - dependencies: - hash-base "^3.0.0" - inherits "^2.0.1" - safe-buffer "^5.1.2" - mdast-util-from-markdown@^0.8.0: version "0.8.5" resolved "https://registry.yarnpkg.com/mdast-util-from-markdown/-/mdast-util-from-markdown-0.8.5.tgz#d1ef2ca42bc377ecb0463a987910dae89bd9a28c" @@ -4552,27 +3676,6 @@ mdn-data@2.0.14: resolved "https://registry.yarnpkg.com/mdn-data/-/mdn-data-2.0.14.tgz#7113fc4281917d63ce29b43446f701e68c25ba50" integrity sha512-dn6wd0uw5GsdswPFfsgMp5NSB0/aDe6fK94YJV/AJDYXL6HVLWBsxeq7js7Ad+mU2K9LAlwpk6kN2D5mwCPVow== -mdn-data@2.0.4: - version "2.0.4" - resolved "https://registry.yarnpkg.com/mdn-data/-/mdn-data-2.0.4.tgz#699b3c38ac6f1d728091a64650b65d388502fd5b" - integrity sha512-iV3XNKw06j5Q7mi6h+9vbx23Tv7JkjEVgKHW4pimwyDGWm0OIQntJJ+u1C6mg6mK1EaTv42XQ7w76yuzH7M2cA== - -memory-fs@^0.4.1: - version "0.4.1" - resolved "https://registry.yarnpkg.com/memory-fs/-/memory-fs-0.4.1.tgz#3a9a20b8462523e447cfbc7e8bb80ed667bfc552" - integrity sha1-OpoguEYlI+RHz7x+i7gO1me/xVI= - dependencies: - errno "^0.1.3" - readable-stream "^2.0.1" - -memory-fs@^0.5.0: - version "0.5.0" - resolved "https://registry.yarnpkg.com/memory-fs/-/memory-fs-0.5.0.tgz#324c01288b88652966d161db77838720845a8e3c" - integrity sha512-jA0rdU5KoQMC0e6ppoNRtpp6vjFq6+NY7r8hywnC7V+1Xj/MtHwGIbB1QaK/dunyjWteJzmkpd7ooeWg10T7GA== - dependencies: - errno "^0.1.3" - readable-stream "^2.0.1" - meow@^9.0.0: version "9.0.0" resolved "https://registry.yarnpkg.com/meow/-/meow-9.0.0.tgz#cd9510bc5cac9dee7d03c73ee1f9ad959f4ea364" @@ -4616,26 +3719,7 @@ micromark@~2.11.0: debug "^4.0.0" parse-entities "^2.0.0" -micromatch@^3.0.4, micromatch@^3.1.10, micromatch@^3.1.4: - 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version "5.0.6" - resolved "https://registry.yarnpkg.com/optimize-css-assets-webpack-plugin/-/optimize-css-assets-webpack-plugin-5.0.6.tgz#abad0c6c11a632201794f75ddba3ce13e32ae80e" - integrity sha512-JAYw7WrIAIuHWoKeSBB3lJ6ZG9PSDK3JJduv/FMpIY060wvbA8Lqn/TCtxNGICNlg0X5AGshLzIhpYrkltdq+A== - dependencies: - cssnano "^4.1.10" - last-call-webpack-plugin "^3.0.0" - optionator@^0.8.1: version "0.8.3" resolved "https://registry.yarnpkg.com/optionator/-/optionator-0.8.3.tgz#84fa1d036fe9d3c7e21d99884b601167ec8fb495" @@ -5112,11 +4028,6 @@ optionator@^0.9.1: type-check "^0.4.0" word-wrap "^1.2.3" -os-browserify@^0.3.0: - version "0.3.0" - resolved "https://registry.yarnpkg.com/os-browserify/-/os-browserify-0.3.0.tgz#854373c7f5c2315914fc9bfc6bd8238fdda1ec27" - integrity sha1-hUNzx/XCMVkU/Jv8a9gjj92h7Cc= - p-limit@^1.1.0: version "1.3.0" resolved "https://registry.yarnpkg.com/p-limit/-/p-limit-1.3.0.tgz#b86bd5f0c25690911c7590fcbfc2010d54b3ccb8" @@ -5124,14 +4035,14 @@ p-limit@^1.1.0: dependencies: p-try "^1.0.0" -p-limit@^2.0.0, p-limit@^2.2.0: +p-limit@^2.2.0: version "2.3.0" resolved "https://registry.yarnpkg.com/p-limit/-/p-limit-2.3.0.tgz#3dd33c647a214fdfffd835933eb086da0dc21db1" integrity sha512-//88mFWSJx8lxCzwdAABTJL2MyWB12+eIY7MDL2SqLmAkeKU9qxRvWuSyTjm3FUmpBEMuFfckAIqEaVGUDxb6w== dependencies: p-try "^2.0.0" -p-limit@^3.0.2: +p-limit@^3.0.2, p-limit@^3.1.0: version "3.1.0" resolved "https://registry.yarnpkg.com/p-limit/-/p-limit-3.1.0.tgz#e1daccbe78d0d1388ca18c64fea38e3e57e3706b" integrity sha512-TYOanM3wGwNGsZN2cVTYPArw454xnXj5qmWF1bEoAc4+cU/ol7GVh7odevjp1FNHduHc3KZMcFduxU5Xc6uJRQ== @@ -5145,13 +4056,6 @@ p-locate@^2.0.0: dependencies: p-limit "^1.1.0" -p-locate@^3.0.0: - version "3.0.0" - resolved "https://registry.yarnpkg.com/p-locate/-/p-locate-3.0.0.tgz#322d69a05c0264b25997d9f40cd8a891ab0064a4" - integrity sha512-x+12w/To+4GFfgJhBEpiDcLozRJGegY+Ei7/z0tSLkMmxGZNybVMSfWj9aJn8Z5Fc7dBUNJOOVgPv2H7IwulSQ== - dependencies: - p-limit "^2.0.0" - p-locate@^4.1.0: version "4.1.0" resolved "https://registry.yarnpkg.com/p-locate/-/p-locate-4.1.0.tgz#a3428bb7088b3a60292f66919278b7c297ad4f07" @@ -5159,13 +4063,6 @@ p-locate@^4.1.0: dependencies: p-limit "^2.2.0" -p-map@^4.0.0: - version "4.0.0" - resolved "https://registry.yarnpkg.com/p-map/-/p-map-4.0.0.tgz#bb2f95a5eda2ec168ec9274e06a747c3e2904d2b" - integrity sha512-/bjOqmgETBYB5BoEeGVea8dmvHb2m9GLy1E9W43yeyfP6QQCZGFNa+XRceJEuDB6zqr+gKpIAmlLebMpykw/MQ== - dependencies: - aggregate-error "^3.0.0" - p-try@^1.0.0: version "1.0.0" resolved "https://registry.yarnpkg.com/p-try/-/p-try-1.0.0.tgz#cbc79cdbaf8fd4228e13f621f2b1a237c1b207b3" @@ -5176,20 +4073,6 @@ p-try@^2.0.0: resolved "https://registry.yarnpkg.com/p-try/-/p-try-2.2.0.tgz#cb2868540e313d61de58fafbe35ce9004d5540e6" integrity sha512-R4nPAVTAU0B9D35/Gk3uJf/7XYbQcyohSKdvAxIRSNghFl4e71hVoGnBNQz9cWaXxO2I10KTC+3jMdvvoKw6dQ== -pako@~1.0.5: - 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version "3.9.0" - resolved "https://registry.yarnpkg.com/tsconfig-paths/-/tsconfig-paths-3.9.0.tgz#098547a6c4448807e8fcb8eae081064ee9a3c90b" - integrity sha512-dRcuzokWhajtZWkQsDVKbWyY+jgcLC5sqJhg2PSgf4ZkH2aHPvaOY8YWGhmjb68b5qqTfasSsDO9k7RUiEmZAw== +tsconfig-paths@^3.11.0: + version "3.11.0" + resolved "https://registry.yarnpkg.com/tsconfig-paths/-/tsconfig-paths-3.11.0.tgz#954c1fe973da6339c78e06b03ce2e48810b65f36" + integrity sha512-7ecdYDnIdmv639mmDwslG6KQg1Z9STTz1j7Gcz0xa+nshh/gKDAHcPxRbWOsA3SPp0tXP2leTcY9Kw+NAkfZzA== dependencies: "@types/json5" "^0.0.29" json5 "^1.0.1" minimist "^1.2.0" strip-bom "^3.0.0" -tty-browserify@0.0.0: - version "0.0.0" - resolved "https://registry.yarnpkg.com/tty-browserify/-/tty-browserify-0.0.0.tgz#a157ba402da24e9bf957f9aa69d524eed42901a6" - integrity sha1-oVe6QC2iTpv5V/mqadUk7tQpAaY= +tslib@^2.3.0: + version "2.3.1" + resolved "https://registry.yarnpkg.com/tslib/-/tslib-2.3.1.tgz#e8a335add5ceae51aa261d32a490158ef042ef01" + integrity sha512-77EbyPPpMz+FRFRuAFlWMtmgUWGe9UOG2Z25NqCwiIjRhOf5iKGuzSe5P2w1laq+FkRy4p+PCuVkJSGkzTEKVw== type-check@^0.4.0, type-check@~0.4.0: version "0.4.0" @@ -7302,33 +5610,33 @@ unbox-primitive@^1.0.1: has-symbols "^1.0.2" which-boxed-primitive "^1.0.2" -unicode-canonical-property-names-ecmascript@^1.0.4: - 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unique-slug "^2.0.0" - -unique-slug@^2.0.0: - version "2.0.2" - resolved "https://registry.yarnpkg.com/unique-slug/-/unique-slug-2.0.2.tgz#baabce91083fc64e945b0f3ad613e264f7cd4e6c" - integrity sha512-zoWr9ObaxALD3DOPfjPSqxt4fnZiWblxHIgeWqW8x7UqDzEtHEQLzji2cuJYQFCU6KmoJikOYAZlrTHHebjx2w== - dependencies: - imurmurhash "^0.1.4" - unist-util-find-all-after@^3.0.2: version "3.0.2" resolved "https://registry.yarnpkg.com/unist-util-find-all-after/-/unist-util-find-all-after-3.0.2.tgz#fdfecd14c5b7aea5e9ef38d5e0d5f774eeb561f6" @@ -7395,24 +5674,6 @@ universalify@^2.0.0: resolved "https://registry.yarnpkg.com/universalify/-/universalify-2.0.0.tgz#75a4984efedc4b08975c5aeb73f530d02df25717" integrity sha512-hAZsKq7Yy11Zu1DE0OzWjw7nnLZmJZYTDZZyEFHZdUhV8FkH5MCfoU1XMaxXovpyW5nq5scPqq0ZDP9Zyl04oQ== -unquote@~1.1.1: - version "1.1.1" - resolved "https://registry.yarnpkg.com/unquote/-/unquote-1.1.1.tgz#8fded7324ec6e88a0ff8b905e7c098cdc086d544" - integrity sha1-j97XMk7G6IoP+LkF58CYzcCG1UQ= - -unset-value@^1.0.0: - 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integrity sha1-2e8H3Od7mQK4o6j6SzHD4/fm6Ho= - -which@^1.2.14, which@^1.2.9, which@^1.3.1: +which@^1.3.1: version "1.3.1" resolved "https://registry.yarnpkg.com/which/-/which-1.3.1.tgz#a45043d54f5805316da8d62f9f50918d3da70b0a" integrity sha512-HxJdYWq1MTIQbJ3nw0cqssHoTNU267KlrDuGZ1WYlxDStUtKUhOaJmh112/TZmHxxUfuJqPXSOm7tDyas0OSIQ== @@ -7625,6 +5856,11 @@ which@^2.0.1: dependencies: isexe "^2.0.0" +wildcard@^2.0.0: + version "2.0.0" + resolved "https://registry.yarnpkg.com/wildcard/-/wildcard-2.0.0.tgz#a77d20e5200c6faaac979e4b3aadc7b3dd7f8fec" + integrity sha512-JcKqAHLPxcdb9KM49dufGXn2x3ssnfjbcaQdLlfZsL9rH9wgDQjUtDxbo8NE0F6SFvydeu1VhZe7hZuHsB2/pw== + word-wrap@^1.2.3, word-wrap@~1.2.3: version "1.2.3" resolved "https://registry.yarnpkg.com/word-wrap/-/word-wrap-1.2.3.tgz#610636f6b1f703891bd34771ccb17fb93b47079c" @@ -7635,22 +5871,6 @@ wordwrap@~0.0.2: resolved "https://registry.yarnpkg.com/wordwrap/-/wordwrap-0.0.3.tgz#a3d5da6cd5c0bc0008d37234bbaf1bed63059107" integrity sha1-o9XabNXAvAAI03I0u68b7WMFkQc= -worker-farm@^1.7.0: - 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sha1 = "b310c8d642acada348c1fa3b3e6ce0e851bee077"; + name = "babel_plugin_polyfill_regenerator___babel_plugin_polyfill_regenerator_0.2.3.tgz"; + url = "https://registry.yarnpkg.com/babel-plugin-polyfill-regenerator/-/babel-plugin-polyfill-regenerator-0.2.3.tgz"; + sha1 = "2e9808f5027c4336c994992b48a4262580cb8d6d"; }; } { @@ -1585,22 +1585,6 @@ sha1 = "dc70f920d78db8b858535795867bf48f820633d9"; }; } - { - name = "base64_js___base64_js_1.5.1.tgz"; - path = fetchurl { - name = "base64_js___base64_js_1.5.1.tgz"; - url = "https://registry.yarnpkg.com/base64-js/-/base64-js-1.5.1.tgz"; - sha1 = "1b1b440160a5bf7ad40b650f095963481903930a"; - }; - } - { - name = "base___base_0.11.2.tgz"; - path = fetchurl { - name = "base___base_0.11.2.tgz"; - url = "https://registry.yarnpkg.com/base/-/base-0.11.2.tgz"; - sha1 = "7bde5ced145b6d551a90db87f83c558b4eb48a8f"; - }; - } { name = "big.js___big.js_5.2.2.tgz"; path = fetchurl { @@ -1609,14 +1593,6 @@ sha1 = "65f0af382f578bcdc742bd9c281e9cb2d7768328"; }; } - 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url = "https://registry.yarnpkg.com/bn.js/-/bn.js-4.12.0.tgz"; - sha1 = "775b3f278efbb9718eec7361f483fb36fbbfea88"; - }; - } - { - name = "bn.js___bn.js_5.2.0.tgz"; - path = fetchurl { - name = "bn.js___bn.js_5.2.0.tgz"; - url = "https://registry.yarnpkg.com/bn.js/-/bn.js-5.2.0.tgz"; - sha1 = "358860674396c6997771a9d051fcc1b57d4ae002"; - }; - } { name = "boolbase___boolbase_1.0.0.tgz"; path = fetchurl { @@ -1673,14 +1617,6 @@ sha1 = "3c7fcbf529d87226f3d2f52b966ff5271eb441dd"; }; } - { - name = "braces___braces_2.3.2.tgz"; - path = fetchurl { - name = "braces___braces_2.3.2.tgz"; - url = "https://registry.yarnpkg.com/braces/-/braces-2.3.2.tgz"; - sha1 = "5979fd3f14cd531565e5fa2df1abfff1dfaee729"; - }; - } { name = "braces___braces_3.0.2.tgz"; path = fetchurl { @@ -1698,67 +1634,11 @@ }; } { - name = "brorand___brorand_1.1.0.tgz"; + name = "browserslist___browserslist_4.17.5.tgz"; path = fetchurl { - name = "brorand___brorand_1.1.0.tgz"; - url = "https://registry.yarnpkg.com/brorand/-/brorand-1.1.0.tgz"; - sha1 = "12c25efe40a45e3c323eb8675a0a0ce57b22371f"; - }; - } - { - name = "browserify_aes___browserify_aes_1.2.0.tgz"; - path = fetchurl { - name = "browserify_aes___browserify_aes_1.2.0.tgz"; - url = "https://registry.yarnpkg.com/browserify-aes/-/browserify-aes-1.2.0.tgz"; - sha1 = "326734642f403dabc3003209853bb70ad428ef48"; - }; - } - { - name = "browserify_cipher___browserify_cipher_1.0.1.tgz"; - path = fetchurl { - name = "browserify_cipher___browserify_cipher_1.0.1.tgz"; - url = "https://registry.yarnpkg.com/browserify-cipher/-/browserify-cipher-1.0.1.tgz"; - sha1 = "8d6474c1b870bfdabcd3bcfcc1934a10e94f15f0"; - }; - } - { - name = "browserify_des___browserify_des_1.0.2.tgz"; - path = fetchurl { - name = "browserify_des___browserify_des_1.0.2.tgz"; - url = "https://registry.yarnpkg.com/browserify-des/-/browserify-des-1.0.2.tgz"; - sha1 = "3af4f1f59839403572f1c66204375f7a7f703e9c"; - }; - } - { - name = "browserify_rsa___browserify_rsa_4.1.0.tgz"; - path = fetchurl { - name = "browserify_rsa___browserify_rsa_4.1.0.tgz"; - url = "https://registry.yarnpkg.com/browserify-rsa/-/browserify-rsa-4.1.0.tgz"; - sha1 = "b2fd06b5b75ae297f7ce2dc651f918f5be158c8d"; - }; - } - { - name = "browserify_sign___browserify_sign_4.2.1.tgz"; - path = fetchurl { - name = "browserify_sign___browserify_sign_4.2.1.tgz"; - url = "https://registry.yarnpkg.com/browserify-sign/-/browserify-sign-4.2.1.tgz"; - sha1 = "eaf4add46dd54be3bb3b36c0cf15abbeba7956c3"; - }; - } - { - name = "browserify_zlib___browserify_zlib_0.2.0.tgz"; - path = fetchurl { - name = "browserify_zlib___browserify_zlib_0.2.0.tgz"; - url = "https://registry.yarnpkg.com/browserify-zlib/-/browserify-zlib-0.2.0.tgz"; - sha1 = "2869459d9aa3be245fe8fe2ca1f46e2e7f54d73f"; - }; - } - { - name = "browserslist___browserslist_4.16.6.tgz"; - path = fetchurl { - name = "browserslist___browserslist_4.16.6.tgz"; - url = "https://registry.yarnpkg.com/browserslist/-/browserslist-4.16.6.tgz"; - sha1 = "d7901277a5a88e554ed305b183ec9b0c08f66fa2"; + name = "browserslist___browserslist_4.17.5.tgz"; + url = "https://registry.yarnpkg.com/browserslist/-/browserslist-4.17.5.tgz"; + sha1 = "c827bbe172a4c22b123f5e337533ceebadfdd559"; }; } { @@ -1770,35 +1650,11 @@ }; } { - name = "buffer_from___buffer_from_1.1.1.tgz"; + name = "buffer_from___buffer_from_1.1.2.tgz"; path = fetchurl { - name = "buffer_from___buffer_from_1.1.1.tgz"; - url = "https://registry.yarnpkg.com/buffer-from/-/buffer-from-1.1.1.tgz"; - sha1 = "32713bc028f75c02fdb710d7c7bcec1f2c6070ef"; - }; - } - { - name = "buffer_xor___buffer_xor_1.0.3.tgz"; - path = fetchurl { - name = "buffer_xor___buffer_xor_1.0.3.tgz"; - url = "https://registry.yarnpkg.com/buffer-xor/-/buffer-xor-1.0.3.tgz"; - sha1 = "26e61ed1422fb70dd42e6e36729ed51d855fe8d9"; - }; - } - { - name = "buffer___buffer_4.9.2.tgz"; - path = fetchurl { - name = "buffer___buffer_4.9.2.tgz"; - url = "https://registry.yarnpkg.com/buffer/-/buffer-4.9.2.tgz"; - sha1 = "230ead344002988644841ab0244af8c44bbe3ef8"; - }; - } - { - name = "builtin_status_codes___builtin_status_codes_3.0.0.tgz"; - path = fetchurl { - name = "builtin_status_codes___builtin_status_codes_3.0.0.tgz"; - url = "https://registry.yarnpkg.com/builtin-status-codes/-/builtin-status-codes-3.0.0.tgz"; - sha1 = "85982878e21b98e1c66425e03d0174788f569ee8"; + name = "buffer_from___buffer_from_1.1.2.tgz"; + url = "https://registry.yarnpkg.com/buffer-from/-/buffer-from-1.1.2.tgz"; + sha1 = "2b146a6fd72e80b4f55d255f35ed59a3a9a41bd5"; }; } { @@ -1809,30 +1665,6 @@ sha1 = "f6cf7933a360e0588fa9fde85651cdc7f805d1f6"; }; } - { - name = "cacache___cacache_12.0.4.tgz"; - path = fetchurl { - name = "cacache___cacache_12.0.4.tgz"; - url = "https://registry.yarnpkg.com/cacache/-/cacache-12.0.4.tgz"; - sha1 = "668bcbd105aeb5f1d92fe25570ec9525c8faa40c"; - }; - } - { - name = "cacache___cacache_15.2.0.tgz"; - path = fetchurl { - name = "cacache___cacache_15.2.0.tgz"; - url = "https://registry.yarnpkg.com/cacache/-/cacache-15.2.0.tgz"; - sha1 = "73af75f77c58e72d8c630a7a2858cb18ef523389"; - }; - } - { - name = "cache_base___cache_base_1.0.1.tgz"; - path = fetchurl { - name = "cache_base___cache_base_1.0.1.tgz"; - url = "https://registry.yarnpkg.com/cache-base/-/cache-base-1.0.1.tgz"; - sha1 = "0a7f46416831c8b662ee36fe4e7c59d76f666ab2"; - }; - } { name = "call_bind___call_bind_1.0.2.tgz"; path = fetchurl { @@ -1841,30 +1673,6 @@ sha1 = "b1d4e89e688119c3c9a903ad30abb2f6a919be3c"; }; } - { - name = "caller_callsite___caller_callsite_2.0.0.tgz"; - path = fetchurl { - name = "caller_callsite___caller_callsite_2.0.0.tgz"; - url = "https://registry.yarnpkg.com/caller-callsite/-/caller-callsite-2.0.0.tgz"; - sha1 = "847e0fce0a223750a9a027c54b33731ad3154134"; - }; - } - { - name = "caller_path___caller_path_2.0.0.tgz"; - path = fetchurl { - name = "caller_path___caller_path_2.0.0.tgz"; - url = "https://registry.yarnpkg.com/caller-path/-/caller-path-2.0.0.tgz"; - sha1 = "468f83044e369ab2010fac5f06ceee15bb2cb1f4"; - }; - } - { - name = "callsites___callsites_2.0.0.tgz"; - path = fetchurl { - name = "callsites___callsites_2.0.0.tgz"; - url = "https://registry.yarnpkg.com/callsites/-/callsites-2.0.0.tgz"; - sha1 = "06eb84f00eea413da86affefacbffb36093b3c50"; - }; - } { name = "callsites___callsites_3.1.0.tgz"; path = fetchurl { @@ -1906,11 +1714,11 @@ }; } { - name = "caniuse_lite___caniuse_lite_1.0.30001230.tgz"; + name = "caniuse_lite___caniuse_lite_1.0.30001274.tgz"; path = fetchurl { - name = "caniuse_lite___caniuse_lite_1.0.30001230.tgz"; - url = "https://registry.yarnpkg.com/caniuse-lite/-/caniuse-lite-1.0.30001230.tgz"; - sha1 = "8135c57459854b2240b57a4a6786044bdc5a9f71"; + name = "caniuse_lite___caniuse_lite_1.0.30001274.tgz"; + url = "https://registry.yarnpkg.com/caniuse-lite/-/caniuse-lite-1.0.30001274.tgz"; + sha1 = "26ca36204d15b17601ba6fc35dbdad950a647cc7"; }; } { @@ -1922,11 +1730,11 @@ }; } { - name = "chalk___chalk_4.1.1.tgz"; + name = "chalk___chalk_4.1.2.tgz"; path = fetchurl { - name = "chalk___chalk_4.1.1.tgz"; - url = "https://registry.yarnpkg.com/chalk/-/chalk-4.1.1.tgz"; - sha1 = "c80b3fab28bf6371e6863325eee67e618b77e6ad"; + name = "chalk___chalk_4.1.2.tgz"; + url = "https://registry.yarnpkg.com/chalk/-/chalk-4.1.2.tgz"; + sha1 = "aac4e2b7734a740867aeb16bf02aad556a1e7a01"; }; } { @@ -1954,59 +1762,19 @@ }; } { - name = "chart.js___chart.js_2.9.4.tgz"; + name = "chart.js___chart.js_3.6.0.tgz"; path = fetchurl { - name = "chart.js___chart.js_2.9.4.tgz"; - url = "https://registry.yarnpkg.com/chart.js/-/chart.js-2.9.4.tgz"; - sha1 = "0827f9563faffb2dc5c06562f8eb10337d5b9684"; + name = "chart.js___chart.js_3.6.0.tgz"; + url = "https://registry.yarnpkg.com/chart.js/-/chart.js-3.6.0.tgz"; + sha1 = "a87fce8431d4e7c5523d721f487f53aada1e42fe"; }; } { - name = "chartjs_color_string___chartjs_color_string_0.6.0.tgz"; + name = "chokidar___chokidar_3.5.2.tgz"; path = fetchurl { - name = "chartjs_color_string___chartjs_color_string_0.6.0.tgz"; - url = "https://registry.yarnpkg.com/chartjs-color-string/-/chartjs-color-string-0.6.0.tgz"; - sha1 = "1df096621c0e70720a64f4135ea171d051402f71"; - }; - } - { - name = "chartjs_color___chartjs_color_2.4.1.tgz"; - path = fetchurl { - name = "chartjs_color___chartjs_color_2.4.1.tgz"; - url = "https://registry.yarnpkg.com/chartjs-color/-/chartjs-color-2.4.1.tgz"; - sha1 = "6118bba202fe1ea79dd7f7c0f9da93467296c3b0"; - }; - } - { - name = "chokidar___chokidar_2.1.8.tgz"; - path = fetchurl { - name = "chokidar___chokidar_2.1.8.tgz"; - url = "https://registry.yarnpkg.com/chokidar/-/chokidar-2.1.8.tgz"; - sha1 = "804b3a7b6a99358c3c5c61e71d8728f041cff917"; - }; - } - { - name = "chokidar___chokidar_3.5.1.tgz"; - path = fetchurl { - name = "chokidar___chokidar_3.5.1.tgz"; - url = "https://registry.yarnpkg.com/chokidar/-/chokidar-3.5.1.tgz"; - sha1 = "ee9ce7bbebd2b79f49f304799d5468e31e14e68a"; - }; - } - { - name = "chownr___chownr_1.1.4.tgz"; - path = fetchurl { - name = "chownr___chownr_1.1.4.tgz"; - url = "https://registry.yarnpkg.com/chownr/-/chownr-1.1.4.tgz"; - sha1 = "6fc9d7b42d32a583596337666e7d08084da2cc6b"; - }; - } - { - name = "chownr___chownr_2.0.0.tgz"; - path = fetchurl { - name = "chownr___chownr_2.0.0.tgz"; - url = "https://registry.yarnpkg.com/chownr/-/chownr-2.0.0.tgz"; - sha1 = "15bfbe53d2eab4cf70f18a8cd68ebe5b3cb1dece"; + name = "chokidar___chokidar_3.5.2.tgz"; + url = "https://registry.yarnpkg.com/chokidar/-/chokidar-3.5.2.tgz"; + sha1 = "dba3976fcadb016f66fd365021d91600d01c1e75"; }; } { @@ -2018,35 +1786,19 @@ }; } { - name = "cipher_base___cipher_base_1.0.4.tgz"; + name = "classnames___classnames_2.3.1.tgz"; path = fetchurl { - name = "cipher_base___cipher_base_1.0.4.tgz"; - url = "https://registry.yarnpkg.com/cipher-base/-/cipher-base-1.0.4.tgz"; - sha1 = "8760e4ecc272f4c363532f926d874aae2c1397de"; + name = "classnames___classnames_2.3.1.tgz"; + url = "https://registry.yarnpkg.com/classnames/-/classnames-2.3.1.tgz"; + sha1 = "dfcfa3891e306ec1dad105d0e88f4417b8535e8e"; }; } { - name = "class_utils___class_utils_0.3.6.tgz"; + name = "clone_deep___clone_deep_4.0.1.tgz"; path = fetchurl { - name = "class_utils___class_utils_0.3.6.tgz"; - url = "https://registry.yarnpkg.com/class-utils/-/class-utils-0.3.6.tgz"; - sha1 = "f93369ae8b9a7ce02fd41faad0ca83033190c463"; - }; - } - { - name = "clean_stack___clean_stack_2.2.0.tgz"; - path = fetchurl { - name = "clean_stack___clean_stack_2.2.0.tgz"; - url = "https://registry.yarnpkg.com/clean-stack/-/clean-stack-2.2.0.tgz"; - sha1 = "ee8472dbb129e727b31e8a10a427dee9dfe4008b"; - }; - } - { - name = "cliui___cliui_5.0.0.tgz"; - path = fetchurl { - name = "cliui___cliui_5.0.0.tgz"; - url = "https://registry.yarnpkg.com/cliui/-/cliui-5.0.0.tgz"; - sha1 = "deefcfdb2e800784aa34f46fa08e06851c7bbbc5"; + name = "clone_deep___clone_deep_4.0.1.tgz"; + url = "https://registry.yarnpkg.com/clone-deep/-/clone-deep-4.0.1.tgz"; + sha1 = "c19fd9bdbbf85942b4fd979c84dcf7d5f07c2387"; }; } { @@ -2057,22 +1809,6 @@ sha1 = "7d65e00885cd8796405c35a737e7a86b7429e36f"; }; } - { - name = "coa___coa_2.0.2.tgz"; - path = fetchurl { - name = "coa___coa_2.0.2.tgz"; - url = "https://registry.yarnpkg.com/coa/-/coa-2.0.2.tgz"; - sha1 = "43f6c21151b4ef2bf57187db0d73de229e3e7ec3"; - }; - } - { - name = "collection_visit___collection_visit_1.0.0.tgz"; - path = fetchurl { - name = "collection_visit___collection_visit_1.0.0.tgz"; - url = "https://registry.yarnpkg.com/collection-visit/-/collection-visit-1.0.0.tgz"; - sha1 = "4bc0373c164bc3291b4d368c829cf1a80a59dca0"; - }; - } { name = "color_convert___color_convert_1.9.3.tgz"; path = fetchurl { @@ -2106,27 +1842,35 @@ }; } { - name = "color_string___color_string_1.5.5.tgz"; + name = "color_string___color_string_1.6.0.tgz"; path = fetchurl { - name = "color_string___color_string_1.5.5.tgz"; - url = "https://registry.yarnpkg.com/color-string/-/color-string-1.5.5.tgz"; - sha1 = "65474a8f0e7439625f3d27a6a19d89fc45223014"; + name = "color_string___color_string_1.6.0.tgz"; + url = "https://registry.yarnpkg.com/color-string/-/color-string-1.6.0.tgz"; + sha1 = "c3915f61fe267672cb7e1e064c9d692219f6c312"; }; } { - name = "color___color_3.1.3.tgz"; + name = "color___color_4.0.1.tgz"; path = fetchurl { - name = "color___color_3.1.3.tgz"; - url = "https://registry.yarnpkg.com/color/-/color-3.1.3.tgz"; - sha1 = "ca67fb4e7b97d611dcde39eceed422067d91596e"; + name = "color___color_4.0.1.tgz"; + url = "https://registry.yarnpkg.com/color/-/color-4.0.1.tgz"; + sha1 = "21df44cd10245a91b1ccf5ba031609b0e10e7d67"; }; } { - name = "colorette___colorette_1.2.2.tgz"; + name = "colord___colord_2.9.1.tgz"; path = fetchurl { - name = "colorette___colorette_1.2.2.tgz"; - url = "https://registry.yarnpkg.com/colorette/-/colorette-1.2.2.tgz"; - sha1 = "cbcc79d5e99caea2dbf10eb3a26fd8b3e6acfa94"; + name = "colord___colord_2.9.1.tgz"; + url = "https://registry.yarnpkg.com/colord/-/colord-2.9.1.tgz"; + sha1 = "c961ea0efeb57c9f0f4834458f26cb9cc4a3f90e"; + }; + } + { + name = "colorette___colorette_2.0.16.tgz"; + path = fetchurl { + name = "colorette___colorette_2.0.16.tgz"; + url = "https://registry.yarnpkg.com/colorette/-/colorette-2.0.16.tgz"; + sha1 = "713b9af84fdb000139f04546bd4a93f62a5085da"; }; } { @@ -2145,6 +1889,14 @@ sha1 = "0792eb682dfbc325999bb2b84fddddba110ac73c"; }; } + { + name = "commander___commander_7.2.0.tgz"; + path = fetchurl { + name = "commander___commander_7.2.0.tgz"; + url = "https://registry.yarnpkg.com/commander/-/commander-7.2.0.tgz"; + sha1 = "a36cb57d0b501ce108e4d20559a150a391d97ab7"; + }; + } { name = "commondir___commondir_1.0.1.tgz"; path = fetchurl { @@ -2154,11 +1906,11 @@ }; } { - name = "component_emitter___component_emitter_1.3.0.tgz"; + name = "compute_scroll_into_view___compute_scroll_into_view_1.0.17.tgz"; path = fetchurl { - 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name = "console_browserify___console_browserify_1.2.0.tgz"; + name = "copy_webpack_plugin___copy_webpack_plugin_9.0.1.tgz"; path = fetchurl { - name = "console_browserify___console_browserify_1.2.0.tgz"; - url = "https://registry.yarnpkg.com/console-browserify/-/console-browserify-1.2.0.tgz"; - sha1 = "67063cef57ceb6cf4993a2ab3a55840ae8c49336"; + name = "copy_webpack_plugin___copy_webpack_plugin_9.0.1.tgz"; + url = "https://registry.yarnpkg.com/copy-webpack-plugin/-/copy-webpack-plugin-9.0.1.tgz"; + sha1 = "b71d21991599f61a4ee00ba79087b8ba279bbb59"; }; } { - name = "constants_browserify___constants_browserify_1.0.0.tgz"; + name = "core_js_compat___core_js_compat_3.19.0.tgz"; path = fetchurl { - name = "constants_browserify___constants_browserify_1.0.0.tgz"; - url = "https://registry.yarnpkg.com/constants-browserify/-/constants-browserify-1.0.0.tgz"; - sha1 = "c20b96d8c617748aaf1c16021760cd27fcb8cb75"; + name = "core_js_compat___core_js_compat_3.19.0.tgz"; + url = "https://registry.yarnpkg.com/core-js-compat/-/core-js-compat-3.19.0.tgz"; + sha1 = "b3b93f93c8721b3ed52b91f12f964cc410967f8b"; }; } { - 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sha1 = "b26d5fd5f72a11dfe7a7846fb4c67260f96bf282"; - }; - } - { - name = "cssnano_util_same_parent___cssnano_util_same_parent_4.0.1.tgz"; - path = fetchurl { - name = "cssnano_util_same_parent___cssnano_util_same_parent_4.0.1.tgz"; - url = "https://registry.yarnpkg.com/cssnano-util-same-parent/-/cssnano-util-same-parent-4.0.1.tgz"; - sha1 = "574082fb2859d2db433855835d9a8456ea18bbf3"; - }; - } - { - name = "cssnano___cssnano_4.1.11.tgz"; - path = fetchurl { - name = "cssnano___cssnano_4.1.11.tgz"; - url = "https://registry.yarnpkg.com/cssnano/-/cssnano-4.1.11.tgz"; - sha1 = "c7b5f5b81da269cb1fd982cb960c1200910c9a99"; + name = "cssnano___cssnano_5.0.8.tgz"; + url = "https://registry.yarnpkg.com/cssnano/-/cssnano-5.0.8.tgz"; + sha1 = "39ad166256980fcc64faa08c9bb18bb5789ecfa9"; }; } { @@ -2458,19 +2098,11 @@ }; } { - name = "csstype___csstype_3.0.8.tgz"; + name = "csstype___csstype_3.0.9.tgz"; path = fetchurl { - name = "csstype___csstype_3.0.8.tgz"; - url = "https://registry.yarnpkg.com/csstype/-/csstype-3.0.8.tgz"; - sha1 = "d2266a792729fb227cd216fb572f43728e1ad340"; - }; - } - { - name = "cyclist___cyclist_1.0.1.tgz"; - path = fetchurl { - name = "cyclist___cyclist_1.0.1.tgz"; - url = "https://registry.yarnpkg.com/cyclist/-/cyclist-1.0.1.tgz"; - sha1 = "596e9698fd0c80e12038c2b82d6eb1b35b6224d9"; + name = "csstype___csstype_3.0.9.tgz"; + url = "https://registry.yarnpkg.com/csstype/-/csstype-3.0.9.tgz"; + sha1 = "6410af31b26bd0520933d02cbc64fce9ce3fbf0b"; }; } { @@ -2521,6 +2153,14 @@ sha1 = "2a775473aaab29b55025208b2245e840ecfd4fe1"; }; } + { + name = "debounce_promise___debounce_promise_3.1.2.tgz"; + path = fetchurl { + name = "debounce_promise___debounce_promise_3.1.2.tgz"; + url = "https://registry.yarnpkg.com/debounce-promise/-/debounce-promise-3.1.2.tgz"; + sha1 = "320fb8c7d15a344455cd33cee5ab63530b6dc7c5"; + }; + } { name = "debug___debug_2.6.9.tgz"; path = fetchurl { @@ -2538,11 +2178,11 @@ }; } { - name = "debug___debug_4.3.1.tgz"; + name = "debug___debug_4.3.2.tgz"; path = fetchurl { - name = "debug___debug_4.3.1.tgz"; - url = "https://registry.yarnpkg.com/debug/-/debug-4.3.1.tgz"; - sha1 = "f0d229c505e0c6d8c49ac553d1b13dc183f6b2ee"; + name = "debug___debug_4.3.2.tgz"; + url = "https://registry.yarnpkg.com/debug/-/debug-4.3.2.tgz"; + sha1 = "f0a49c18ac8779e31d4a0c6029dfb76873c7428b"; }; } { @@ -2562,19 +2202,11 @@ }; } { - name = "decode_uri_component___decode_uri_component_0.2.0.tgz"; + name = "deep_is___deep_is_0.1.4.tgz"; path = fetchurl { - name = "decode_uri_component___decode_uri_component_0.2.0.tgz"; - url = "https://registry.yarnpkg.com/decode-uri-component/-/decode-uri-component-0.2.0.tgz"; - sha1 = "eb3913333458775cb84cd1a1fae062106bb87545"; - }; - } - { - name = "deep_is___deep_is_0.1.3.tgz"; - path = fetchurl { - name = "deep_is___deep_is_0.1.3.tgz"; - url = "https://registry.yarnpkg.com/deep-is/-/deep-is-0.1.3.tgz"; - sha1 = "b369d6fb5dbc13eecf524f91b070feedc357cf34"; + name = "deep_is___deep_is_0.1.4.tgz"; + url = "https://registry.yarnpkg.com/deep-is/-/deep-is-0.1.4.tgz"; + sha1 = "a6f2dce612fadd2ef1f519b73551f17e85199831"; }; } { @@ -2585,30 +2217,6 @@ sha1 = "cf88da6cbee26fe6db7094f61d870cbd84cee9f1"; }; } - { - name = "define_property___define_property_0.2.5.tgz"; - path = fetchurl { - name = "define_property___define_property_0.2.5.tgz"; - url = "https://registry.yarnpkg.com/define-property/-/define-property-0.2.5.tgz"; - sha1 = "c35b1ef918ec3c990f9a5bc57be04aacec5c8116"; - }; - } - { - name = "define_property___define_property_1.0.0.tgz"; - path = fetchurl { - name = "define_property___define_property_1.0.0.tgz"; - url = "https://registry.yarnpkg.com/define-property/-/define-property-1.0.0.tgz"; - sha1 = "769ebaaf3f4a63aad3af9e8d304c9bbe79bfb0e6"; - }; - } - { - name = "define_property___define_property_2.0.2.tgz"; - path = fetchurl { - name = "define_property___define_property_2.0.2.tgz"; - url = "https://registry.yarnpkg.com/define-property/-/define-property-2.0.2.tgz"; - sha1 = "d459689e8d654ba77e02a817f8710d702cb16e9d"; - }; - } { name = "defined___defined_1.0.0.tgz"; path = fetchurl { @@ -2617,22 +2225,6 @@ sha1 = "c98d9bcef75674188e110969151199e39b1fa693"; }; } - { - name = "des.js___des.js_1.0.1.tgz"; - path = fetchurl { - name = "des.js___des.js_1.0.1.tgz"; - url = "https://registry.yarnpkg.com/des.js/-/des.js-1.0.1.tgz"; - sha1 = "5382142e1bdc53f85d86d53e5f4aa7deb91e0843"; - }; - } - { - name = "detect_file___detect_file_1.0.0.tgz"; - path = fetchurl { - name = "detect_file___detect_file_1.0.0.tgz"; - url = "https://registry.yarnpkg.com/detect-file/-/detect-file-1.0.0.tgz"; - sha1 = "f0d66d03672a825cb1b73bdb3fe62310c8e552b7"; - }; - } { name = "detective___detective_5.2.0.tgz"; path = fetchurl { @@ -2642,19 +2234,11 @@ }; } { - name = "didyoumean___didyoumean_1.2.1.tgz"; + name = "didyoumean___didyoumean_1.2.2.tgz"; path = fetchurl { - name = "didyoumean___didyoumean_1.2.1.tgz"; - url = "https://registry.yarnpkg.com/didyoumean/-/didyoumean-1.2.1.tgz"; - sha1 = "e92edfdada6537d484d73c0172fd1eba0c4976ff"; - }; - } - { - name = "diffie_hellman___diffie_hellman_5.0.3.tgz"; - path = fetchurl { - name = "diffie_hellman___diffie_hellman_5.0.3.tgz"; - url = "https://registry.yarnpkg.com/diffie-hellman/-/diffie-hellman-5.0.3.tgz"; - sha1 = "40e8ee98f55a2149607146921c63e1ae5f3d2875"; + name = "didyoumean___didyoumean_1.2.2.tgz"; + url = "https://registry.yarnpkg.com/didyoumean/-/didyoumean-1.2.2.tgz"; + sha1 = "989346ffe9e839b4555ecf5666edea0d3e8ad037"; }; } { @@ -2665,6 +2249,14 @@ sha1 = "56dbf73d992a4a93ba1584f4534063fd2e41717f"; }; } + { + name = "dlv___dlv_1.1.3.tgz"; + path = fetchurl { + name = "dlv___dlv_1.1.3.tgz"; + url = "https://registry.yarnpkg.com/dlv/-/dlv-1.1.3.tgz"; + sha1 = "5c198a8a11453596e751494d49874bc7732f2e79"; + }; + } { name = "doctrine___doctrine_2.1.0.tgz"; path = fetchurl { @@ -2698,11 +2290,11 @@ }; } { - name = "domain_browser___domain_browser_1.2.0.tgz"; + name = "dom_serializer___dom_serializer_1.3.2.tgz"; path = fetchurl { - name = "domain_browser___domain_browser_1.2.0.tgz"; - url = "https://registry.yarnpkg.com/domain-browser/-/domain-browser-1.2.0.tgz"; - sha1 = "3d31f50191a6749dd1375a7f522e823d42e54eda"; + name = "dom_serializer___dom_serializer_1.3.2.tgz"; + url = "https://registry.yarnpkg.com/dom-serializer/-/dom-serializer-1.3.2.tgz"; + sha1 = "6206437d32ceefaec7161803230c7a20bc1b4d91"; }; } { @@ -2729,6 +2321,14 @@ sha1 = "8805097e933d65e85546f726d60f5eb88b44f803"; }; } + { + name = "domhandler___domhandler_4.2.2.tgz"; + path = fetchurl { + name = "domhandler___domhandler_4.2.2.tgz"; + url = "https://registry.yarnpkg.com/domhandler/-/domhandler-4.2.2.tgz"; + sha1 = "e825d721d19a86b8c201a35264e226c678ee755f"; + }; + } { name = "domutils___domutils_1.7.0.tgz"; path = fetchurl { @@ -2738,11 +2338,19 @@ }; } { - name = "dot_prop___dot_prop_5.3.0.tgz"; + name = "domutils___domutils_2.8.0.tgz"; path = fetchurl { - name = "dot_prop___dot_prop_5.3.0.tgz"; - url = "https://registry.yarnpkg.com/dot-prop/-/dot-prop-5.3.0.tgz"; - sha1 = "90ccce708cd9cd82cc4dc8c3ddd9abdd55b20e88"; + name = "domutils___domutils_2.8.0.tgz"; + url = "https://registry.yarnpkg.com/domutils/-/domutils-2.8.0.tgz"; + sha1 = "4437def5db6e2d1f5d6ee859bd95ca7d02048135"; + }; + } + { + name = "downshift___downshift_6.1.7.tgz"; + path = fetchurl { + name = "downshift___downshift_6.1.7.tgz"; + url = "https://registry.yarnpkg.com/downshift/-/downshift-6.1.7.tgz"; + sha1 = "fdb4c4e4f1d11587985cd76e21e8b4b3fa72e44c"; }; } { @@ -2754,35 +2362,19 @@ }; } { - name = "duplexify___duplexify_3.7.1.tgz"; + name = "duplexer___duplexer_0.1.2.tgz"; path = fetchurl { - name = "duplexify___duplexify_3.7.1.tgz"; - url = "https://registry.yarnpkg.com/duplexify/-/duplexify-3.7.1.tgz"; - sha1 = "2a4df5317f6ccfd91f86d6fd25d8d8a103b88309"; + name = "duplexer___duplexer_0.1.2.tgz"; + url = "https://registry.yarnpkg.com/duplexer/-/duplexer-0.1.2.tgz"; + sha1 = "3abe43aef3835f8ae077d136ddce0f276b0400e6"; }; } { - name = "electron_to_chromium___electron_to_chromium_1.3.742.tgz"; + name = "electron_to_chromium___electron_to_chromium_1.3.885.tgz"; path = fetchurl { - name = "electron_to_chromium___electron_to_chromium_1.3.742.tgz"; - url = "https://registry.yarnpkg.com/electron-to-chromium/-/electron-to-chromium-1.3.742.tgz"; - sha1 = "7223215acbbd3a5284962ebcb6df85d88b95f200"; - }; - } - { - name = "elliptic___elliptic_6.5.4.tgz"; - path = fetchurl { - name = "elliptic___elliptic_6.5.4.tgz"; - url = "https://registry.yarnpkg.com/elliptic/-/elliptic-6.5.4.tgz"; - sha1 = "da37cebd31e79a1367e941b592ed1fbebd58abbb"; - }; - } - { - name = "emoji_regex___emoji_regex_7.0.3.tgz"; - path = fetchurl { - name = "emoji_regex___emoji_regex_7.0.3.tgz"; - url = "https://registry.yarnpkg.com/emoji-regex/-/emoji-regex-7.0.3.tgz"; - sha1 = "933a04052860c85e83c122479c4748a8e4c72156"; + name = "electron_to_chromium___electron_to_chromium_1.3.885.tgz"; + url = "https://registry.yarnpkg.com/electron-to-chromium/-/electron-to-chromium-1.3.885.tgz"; + sha1 = "c8cec32fbc61364127849ae00f2395a1bae7c454"; }; } { @@ -2810,19 +2402,11 @@ }; } { - name = "end_of_stream___end_of_stream_1.4.4.tgz"; + name = "enhanced_resolve___enhanced_resolve_5.8.3.tgz"; path = fetchurl { - name = "end_of_stream___end_of_stream_1.4.4.tgz"; - url = "https://registry.yarnpkg.com/end-of-stream/-/end-of-stream-1.4.4.tgz"; - sha1 = "5ae64a5f45057baf3626ec14da0ca5e4b2431eb0"; - }; - } - { - name = "enhanced_resolve___enhanced_resolve_4.5.0.tgz"; - path = fetchurl { - name = "enhanced_resolve___enhanced_resolve_4.5.0.tgz"; - url = "https://registry.yarnpkg.com/enhanced-resolve/-/enhanced-resolve-4.5.0.tgz"; - sha1 = "2f3cfd84dbe3b487f18f2db2ef1e064a571ca5ec"; + name = "enhanced_resolve___enhanced_resolve_5.8.3.tgz"; + url = "https://registry.yarnpkg.com/enhanced-resolve/-/enhanced-resolve-5.8.3.tgz"; + sha1 = "6d552d465cce0423f5b3d718511ea53826a7b2f0"; }; } { @@ -2850,11 +2434,11 @@ }; } { - name = "errno___errno_0.1.8.tgz"; + name = "envinfo___envinfo_7.8.1.tgz"; path = fetchurl { - name = "errno___errno_0.1.8.tgz"; - url = "https://registry.yarnpkg.com/errno/-/errno-0.1.8.tgz"; - sha1 = "8bb3e9c7d463be4976ff888f76b4809ebc2e811f"; + name = "envinfo___envinfo_7.8.1.tgz"; + url = "https://registry.yarnpkg.com/envinfo/-/envinfo-7.8.1.tgz"; + sha1 = "06377e3e5f4d379fea7ac592d5ad8927e0c4d475"; }; } { @@ -2866,11 +2450,19 @@ }; } { - name = "es_abstract___es_abstract_1.18.3.tgz"; + name = "es_abstract___es_abstract_1.19.1.tgz"; path = fetchurl { - name = "es_abstract___es_abstract_1.18.3.tgz"; - url = "https://registry.yarnpkg.com/es-abstract/-/es-abstract-1.18.3.tgz"; - sha1 = "25c4c3380a27aa203c44b2b685bba94da31b63e0"; + name = "es_abstract___es_abstract_1.19.1.tgz"; + url = "https://registry.yarnpkg.com/es-abstract/-/es-abstract-1.19.1.tgz"; + sha1 = "d4885796876916959de78edaa0df456627115ec3"; + }; + } + { + name = "es_module_lexer___es_module_lexer_0.4.1.tgz"; + path = fetchurl { + name = "es_module_lexer___es_module_lexer_0.4.1.tgz"; + url = "https://registry.yarnpkg.com/es-module-lexer/-/es-module-lexer-0.4.1.tgz"; + sha1 = "dda8c6a14d8f340a24e34331e0fab0cb50438e0e"; }; } { @@ -2921,22 +2513,6 @@ sha1 = "dbae17ef96c8e4bedb1356f4504fa4cc2f7cb7e2"; }; } - { - name = "eslint_config_airbnb_base___eslint_config_airbnb_base_14.2.1.tgz"; - path = fetchurl { - name = "eslint_config_airbnb_base___eslint_config_airbnb_base_14.2.1.tgz"; - url = "https://registry.yarnpkg.com/eslint-config-airbnb-base/-/eslint-config-airbnb-base-14.2.1.tgz"; - sha1 = "8a2eb38455dc5a312550193b319cdaeef042cd1e"; - }; - } - { - name = "eslint_config_airbnb___eslint_config_airbnb_18.2.1.tgz"; - path = fetchurl { - name = "eslint_config_airbnb___eslint_config_airbnb_18.2.1.tgz"; - url = "https://registry.yarnpkg.com/eslint-config-airbnb/-/eslint-config-airbnb-18.2.1.tgz"; - sha1 = "b7fe2b42f9f8173e825b73c8014b592e449c98d9"; - }; - } { name = "eslint_config_prettier___eslint_config_prettier_7.2.0.tgz"; path = fetchurl { @@ -2946,27 +2522,27 @@ }; } { - name = "eslint_import_resolver_node___eslint_import_resolver_node_0.3.4.tgz"; + name = "eslint_import_resolver_node___eslint_import_resolver_node_0.3.6.tgz"; path = fetchurl { - name = "eslint_import_resolver_node___eslint_import_resolver_node_0.3.4.tgz"; - url = "https://registry.yarnpkg.com/eslint-import-resolver-node/-/eslint-import-resolver-node-0.3.4.tgz"; - sha1 = "85ffa81942c25012d8231096ddf679c03042c717"; + name = "eslint_import_resolver_node___eslint_import_resolver_node_0.3.6.tgz"; + url = "https://registry.yarnpkg.com/eslint-import-resolver-node/-/eslint-import-resolver-node-0.3.6.tgz"; + sha1 = "4048b958395da89668252001dbd9eca6b83bacbd"; }; } { - name = "eslint_module_utils___eslint_module_utils_2.6.1.tgz"; + name = "eslint_module_utils___eslint_module_utils_2.7.1.tgz"; path = fetchurl { - name = "eslint_module_utils___eslint_module_utils_2.6.1.tgz"; - url = "https://registry.yarnpkg.com/eslint-module-utils/-/eslint-module-utils-2.6.1.tgz"; - sha1 = "b51be1e473dd0de1c5ea638e22429c2490ea8233"; + name = "eslint_module_utils___eslint_module_utils_2.7.1.tgz"; + url = "https://registry.yarnpkg.com/eslint-module-utils/-/eslint-module-utils-2.7.1.tgz"; + sha1 = "b435001c9f8dd4ab7f6d0efcae4b9696d4c24b7c"; }; } { - name = "eslint_plugin_import___eslint_plugin_import_2.23.3.tgz"; + name = "eslint_plugin_import___eslint_plugin_import_2.25.2.tgz"; path = fetchurl { - name = "eslint_plugin_import___eslint_plugin_import_2.23.3.tgz"; - url = "https://registry.yarnpkg.com/eslint-plugin-import/-/eslint-plugin-import-2.23.3.tgz"; - sha1 = "8a1b073289fff03c4af0f04b6df956b7d463e191"; + name = "eslint_plugin_import___eslint_plugin_import_2.25.2.tgz"; + url = "https://registry.yarnpkg.com/eslint-plugin-import/-/eslint-plugin-import-2.25.2.tgz"; + sha1 = "b3b9160efddb702fc1636659e71ba1d10adbe9e9"; }; } { @@ -2978,11 +2554,11 @@ }; } { - name = "eslint_plugin_prettier___eslint_plugin_prettier_3.4.0.tgz"; + name = "eslint_plugin_prettier___eslint_plugin_prettier_3.4.1.tgz"; path = fetchurl { - name = "eslint_plugin_prettier___eslint_plugin_prettier_3.4.0.tgz"; - url = "https://registry.yarnpkg.com/eslint-plugin-prettier/-/eslint-plugin-prettier-3.4.0.tgz"; - sha1 = "cdbad3bf1dbd2b177e9825737fe63b476a08f0c7"; + name = "eslint_plugin_prettier___eslint_plugin_prettier_3.4.1.tgz"; + url = "https://registry.yarnpkg.com/eslint-plugin-prettier/-/eslint-plugin-prettier-3.4.1.tgz"; + sha1 = "e9ddb200efb6f3d05ffe83b1665a716af4a387e5"; }; } { @@ -2994,19 +2570,11 @@ }; } { - name = "eslint_plugin_react___eslint_plugin_react_7.23.2.tgz"; + name = "eslint_plugin_react___eslint_plugin_react_7.26.1.tgz"; path = fetchurl { - name = "eslint_plugin_react___eslint_plugin_react_7.23.2.tgz"; - url = "https://registry.yarnpkg.com/eslint-plugin-react/-/eslint-plugin-react-7.23.2.tgz"; - sha1 = "2d2291b0f95c03728b55869f01102290e792d494"; - }; - } - { - name = "eslint_scope___eslint_scope_4.0.3.tgz"; - path = fetchurl { - name = "eslint_scope___eslint_scope_4.0.3.tgz"; - url = "https://registry.yarnpkg.com/eslint-scope/-/eslint-scope-4.0.3.tgz"; - sha1 = "ca03833310f6889a3264781aa82e63eb9cfe7848"; + name = "eslint_plugin_react___eslint_plugin_react_7.26.1.tgz"; + url = "https://registry.yarnpkg.com/eslint-plugin-react/-/eslint-plugin-react-7.26.1.tgz"; + sha1 = "41bcfe3e39e6a5ac040971c1af94437c80daa40e"; }; } { @@ -3042,11 +2610,11 @@ }; } { - name = "eslint___eslint_7.27.0.tgz"; + name = "eslint___eslint_7.32.0.tgz"; path = fetchurl { - name = "eslint___eslint_7.27.0.tgz"; - url = "https://registry.yarnpkg.com/eslint/-/eslint-7.27.0.tgz"; - sha1 = "665a1506d8f95655c9274d84bd78f7166b07e9c7"; + name = "eslint___eslint_7.32.0.tgz"; + url = "https://registry.yarnpkg.com/eslint/-/eslint-7.32.0.tgz"; + sha1 = "c6d328a14be3fb08c8d1d21e12c02fdb7a2a812d"; }; } { @@ -3098,11 +2666,11 @@ }; } { - name = "estraverse___estraverse_5.2.0.tgz"; + name = "estraverse___estraverse_5.3.0.tgz"; path = fetchurl { - name = "estraverse___estraverse_5.2.0.tgz"; - url = "https://registry.yarnpkg.com/estraverse/-/estraverse-5.2.0.tgz"; - sha1 = "307df42547e6cc7324d3cf03c155d5cdb8c53880"; + name = "estraverse___estraverse_5.3.0.tgz"; + url = "https://registry.yarnpkg.com/estraverse/-/estraverse-5.3.0.tgz"; + sha1 = "2eea5290702f26ab8fe5370370ff86c965d21123"; }; } { @@ -3122,11 +2690,11 @@ }; } { - name = "evp_bytestokey___evp_bytestokey_1.0.3.tgz"; + name = "execa___execa_5.1.1.tgz"; path = fetchurl { - name = "evp_bytestokey___evp_bytestokey_1.0.3.tgz"; - url = "https://registry.yarnpkg.com/evp_bytestokey/-/evp_bytestokey-1.0.3.tgz"; - sha1 = "7fcbdb198dc71959432efe13842684e0525acb02"; + name = "execa___execa_5.1.1.tgz"; + url = "https://registry.yarnpkg.com/execa/-/execa-5.1.1.tgz"; + sha1 = "f80ad9cbf4298f7bd1d4c9555c21e93741c411dd"; }; } { @@ -3137,38 +2705,6 @@ sha1 = "16a06b5fe5099df7d00be5d9c06eecded1663b45"; }; } - { - name = "expand_brackets___expand_brackets_2.1.4.tgz"; - path = fetchurl { - name = "expand_brackets___expand_brackets_2.1.4.tgz"; - url = "https://registry.yarnpkg.com/expand-brackets/-/expand-brackets-2.1.4.tgz"; - sha1 = "b77735e315ce30f6b6eff0f83b04151a22449622"; - }; - } - { - name = "expand_tilde___expand_tilde_2.0.2.tgz"; - path = fetchurl { - name = "expand_tilde___expand_tilde_2.0.2.tgz"; - url = "https://registry.yarnpkg.com/expand-tilde/-/expand-tilde-2.0.2.tgz"; - sha1 = "97e801aa052df02454de46b02bf621642cdc8502"; - }; - } - { - name = "extend_shallow___extend_shallow_2.0.1.tgz"; - path = fetchurl { - name = "extend_shallow___extend_shallow_2.0.1.tgz"; - url = "https://registry.yarnpkg.com/extend-shallow/-/extend-shallow-2.0.1.tgz"; - sha1 = "51af7d614ad9a9f610ea1bafbb989d6b1c56890f"; - }; - } - { - name = "extend_shallow___extend_shallow_3.0.2.tgz"; - path = fetchurl { - name = "extend_shallow___extend_shallow_3.0.2.tgz"; - url = "https://registry.yarnpkg.com/extend-shallow/-/extend-shallow-3.0.2.tgz"; - sha1 = "26a71aaf073b39fb2127172746131c2704028db8"; - }; - } { name = "extend___extend_3.0.2.tgz"; path = fetchurl { @@ -3177,14 +2713,6 @@ sha1 = "f8b1136b4071fbd8eb140aff858b1019ec2915fa"; }; } - { - name = "extglob___extglob_2.0.4.tgz"; - path = fetchurl { - name = "extglob___extglob_2.0.4.tgz"; - url = "https://registry.yarnpkg.com/extglob/-/extglob-2.0.4.tgz"; - sha1 = "ad00fe4dc612a9232e8718711dc5cb5ab0285543"; - }; - } { name = "falafel___falafel_2.2.4.tgz"; path = fetchurl { @@ -3210,11 +2738,11 @@ }; } { - name = "fast_glob___fast_glob_3.2.5.tgz"; + name = "fast_glob___fast_glob_3.2.7.tgz"; path = fetchurl { - name = "fast_glob___fast_glob_3.2.5.tgz"; - url = "https://registry.yarnpkg.com/fast-glob/-/fast-glob-3.2.5.tgz"; - sha1 = "7939af2a656de79a4f1901903ee8adcaa7cb9661"; + name = "fast_glob___fast_glob_3.2.7.tgz"; + url = "https://registry.yarnpkg.com/fast-glob/-/fast-glob-3.2.7.tgz"; + sha1 = "fd6cb7a2d7e9aa7a7846111e85a196d6b2f766a1"; }; } { @@ -3242,19 +2770,11 @@ }; } { - name = "fastq___fastq_1.11.0.tgz"; + name = "fastq___fastq_1.13.0.tgz"; path = fetchurl { - name = "fastq___fastq_1.11.0.tgz"; - url = "https://registry.yarnpkg.com/fastq/-/fastq-1.11.0.tgz"; - sha1 = "bb9fb955a07130a918eb63c1f5161cc32a5d0858"; - }; - } - { - name = "figgy_pudding___figgy_pudding_3.5.2.tgz"; - path = fetchurl { - name = "figgy_pudding___figgy_pudding_3.5.2.tgz"; - url = "https://registry.yarnpkg.com/figgy-pudding/-/figgy-pudding-3.5.2.tgz"; - sha1 = "b4eee8148abb01dcf1d1ac34367d59e12fa61d6e"; + name = "fastq___fastq_1.13.0.tgz"; + url = "https://registry.yarnpkg.com/fastq/-/fastq-1.13.0.tgz"; + sha1 = "616760f88a7526bdfc596b7cab8c18938c36b98c"; }; } { @@ -3265,22 +2785,6 @@ sha1 = "211b2dd9659cb0394b073e7323ac3c933d522027"; }; } - { - name = "file_uri_to_path___file_uri_to_path_1.0.0.tgz"; - path = fetchurl { - name = "file_uri_to_path___file_uri_to_path_1.0.0.tgz"; - url = "https://registry.yarnpkg.com/file-uri-to-path/-/file-uri-to-path-1.0.0.tgz"; - sha1 = "553a7b8446ff6f684359c445f1e37a05dacc33dd"; - }; - } - { - name = "fill_range___fill_range_4.0.0.tgz"; - path = fetchurl { - name = "fill_range___fill_range_4.0.0.tgz"; - url = "https://registry.yarnpkg.com/fill-range/-/fill-range-4.0.0.tgz"; - sha1 = "d544811d428f98eb06a63dc402d2403c328c38f7"; - }; - } { name = "fill_range___fill_range_7.0.1.tgz"; path = fetchurl { @@ -3290,19 +2794,11 @@ }; } { - name = "find_cache_dir___find_cache_dir_2.1.0.tgz"; + name = "find_cache_dir___find_cache_dir_3.3.2.tgz"; path = fetchurl { - name = "find_cache_dir___find_cache_dir_2.1.0.tgz"; - url = "https://registry.yarnpkg.com/find-cache-dir/-/find-cache-dir-2.1.0.tgz"; - sha1 = "8d0f94cd13fe43c6c7c261a0d86115ca918c05f7"; - }; - } - { - name = "find_cache_dir___find_cache_dir_3.3.1.tgz"; - path = fetchurl { - name = "find_cache_dir___find_cache_dir_3.3.1.tgz"; - url = "https://registry.yarnpkg.com/find-cache-dir/-/find-cache-dir-3.3.1.tgz"; - sha1 = "89b33fad4a4670daa94f855f7fbe31d6d84fe880"; + name = "find_cache_dir___find_cache_dir_3.3.2.tgz"; + url = "https://registry.yarnpkg.com/find-cache-dir/-/find-cache-dir-3.3.2.tgz"; + sha1 = "b30c5b6eff0730731aea9bbd9dbecbd80256d64b"; }; } { @@ -3313,14 +2809,6 @@ sha1 = "45d1b7e506c717ddd482775a2b77920a3c0c57a7"; }; } - { - name = "find_up___find_up_3.0.0.tgz"; - path = fetchurl { - name = "find_up___find_up_3.0.0.tgz"; - url = "https://registry.yarnpkg.com/find-up/-/find-up-3.0.0.tgz"; - sha1 = "49169f1d7993430646da61ecc5ae355c21c97b73"; - }; - } { name = "find_up___find_up_4.1.0.tgz"; path = fetchurl { @@ -3329,14 +2817,6 @@ sha1 = "97afe7d6cdc0bc5928584b7c8d7b16e8a9aa5d19"; }; } - { - name = "findup_sync___findup_sync_3.0.0.tgz"; - path = fetchurl { - name = "findup_sync___findup_sync_3.0.0.tgz"; - url = "https://registry.yarnpkg.com/findup-sync/-/findup-sync-3.0.0.tgz"; - sha1 = "17b108f9ee512dfb7a5c7f3c8b27ea9e1a9c08d1"; - }; - } { name = "flat_cache___flat_cache_3.0.4.tgz"; path = fetchurl { @@ -3354,27 +2834,11 @@ }; } { - name = "flatted___flatted_3.1.1.tgz"; + name = "flatted___flatted_3.2.2.tgz"; path = fetchurl { - name = "flatted___flatted_3.1.1.tgz"; - url = "https://registry.yarnpkg.com/flatted/-/flatted-3.1.1.tgz"; - sha1 = "c4b489e80096d9df1dfc97c79871aea7c617c469"; - }; - } - { - name = "flush_write_stream___flush_write_stream_1.1.1.tgz"; - path = fetchurl { - name = "flush_write_stream___flush_write_stream_1.1.1.tgz"; - url = "https://registry.yarnpkg.com/flush-write-stream/-/flush-write-stream-1.1.1.tgz"; - sha1 = "8dd7d873a1babc207d94ead0c2e0e44276ebf2e8"; - }; - } - { - name = "for_in___for_in_1.0.2.tgz"; - path = fetchurl { - name = "for_in___for_in_1.0.2.tgz"; - url = "https://registry.yarnpkg.com/for-in/-/for-in-1.0.2.tgz"; - sha1 = "81068d295a8142ec0ac726c6e2200c30fb6d5e80"; + name = "flatted___flatted_3.2.2.tgz"; + url = "https://registry.yarnpkg.com/flatted/-/flatted-3.2.2.tgz"; + sha1 = "64bfed5cb68fe3ca78b3eb214ad97b63bedce561"; }; } { @@ -3386,43 +2850,19 @@ }; } { - name = "fragment_cache___fragment_cache_0.2.1.tgz"; + name = "fraction.js___fraction.js_4.1.1.tgz"; path = fetchurl { - name = "fragment_cache___fragment_cache_0.2.1.tgz"; - url = "https://registry.yarnpkg.com/fragment-cache/-/fragment-cache-0.2.1.tgz"; - sha1 = "4290fad27f13e89be7f33799c6bc5a0abfff0d19"; + name = "fraction.js___fraction.js_4.1.1.tgz"; + url = "https://registry.yarnpkg.com/fraction.js/-/fraction.js-4.1.1.tgz"; + sha1 = "ac4e520473dae67012d618aab91eda09bcb400ff"; }; } { - name = "from2___from2_2.3.0.tgz"; + name = "fs_extra___fs_extra_10.0.0.tgz"; path = fetchurl { - name = "from2___from2_2.3.0.tgz"; - url = "https://registry.yarnpkg.com/from2/-/from2-2.3.0.tgz"; - sha1 = "8bfb5502bde4a4d36cfdeea007fcca21d7e382af"; - }; - } - { - name = "fs_extra___fs_extra_9.1.0.tgz"; - path = fetchurl { - name = "fs_extra___fs_extra_9.1.0.tgz"; - url = "https://registry.yarnpkg.com/fs-extra/-/fs-extra-9.1.0.tgz"; - sha1 = "5954460c764a8da2094ba3554bf839e6b9a7c86d"; - }; - } - { - name = "fs_minipass___fs_minipass_2.1.0.tgz"; - path = fetchurl { - name = "fs_minipass___fs_minipass_2.1.0.tgz"; - url = "https://registry.yarnpkg.com/fs-minipass/-/fs-minipass-2.1.0.tgz"; - sha1 = "7f5036fdbf12c63c169190cbe4199c852271f9fb"; - }; - } - { - name = "fs_write_stream_atomic___fs_write_stream_atomic_1.0.10.tgz"; - path = fetchurl { - name = "fs_write_stream_atomic___fs_write_stream_atomic_1.0.10.tgz"; - url = "https://registry.yarnpkg.com/fs-write-stream-atomic/-/fs-write-stream-atomic-1.0.10.tgz"; - sha1 = "b47df53493ef911df75731e70a9ded0189db40c9"; + name = "fs_extra___fs_extra_10.0.0.tgz"; + url = "https://registry.yarnpkg.com/fs-extra/-/fs-extra-10.0.0.tgz"; + sha1 = "9ff61b655dde53fb34a82df84bb214ce802e17c1"; }; } { @@ -3433,14 +2873,6 @@ sha1 = "1504ad2523158caa40db4a2787cb01411994ea4f"; }; } - { - name = "fsevents___fsevents_1.2.13.tgz"; - path = fetchurl { - name = "fsevents___fsevents_1.2.13.tgz"; - url = "https://registry.yarnpkg.com/fsevents/-/fsevents-1.2.13.tgz"; - sha1 = "f325cb0455592428bcf11b383370ef70e3bfcc38"; - }; - } { name = "fsevents___fsevents_2.3.2.tgz"; path = fetchurl { @@ -3473,14 +2905,6 @@ sha1 = "32a6ee76c3d7f52d46b2b1ae5d93fea8580a25e0"; }; } - { - name = "get_caller_file___get_caller_file_2.0.5.tgz"; - path = fetchurl { - name = "get_caller_file___get_caller_file_2.0.5.tgz"; - url = "https://registry.yarnpkg.com/get-caller-file/-/get-caller-file-2.0.5.tgz"; - sha1 = "4f94412a82db32f36e3b0b9741f8a97feb031f7e"; - }; - } { name = "get_intrinsic___get_intrinsic_1.1.1.tgz"; path = fetchurl { @@ -3498,19 +2922,19 @@ }; } { - name = "get_value___get_value_2.0.6.tgz"; + name = "get_stream___get_stream_6.0.1.tgz"; path = fetchurl { - name = "get_value___get_value_2.0.6.tgz"; - url = "https://registry.yarnpkg.com/get-value/-/get-value-2.0.6.tgz"; - sha1 = "dc15ca1c672387ca76bd37ac0a395ba2042a2c28"; + name = "get_stream___get_stream_6.0.1.tgz"; + url = "https://registry.yarnpkg.com/get-stream/-/get-stream-6.0.1.tgz"; + sha1 = "a262d8eef67aced57c2852ad6167526a43cbf7b7"; }; } { - name = "glob_parent___glob_parent_3.1.0.tgz"; + name = "get_symbol_description___get_symbol_description_1.0.0.tgz"; path = fetchurl { - name = "glob_parent___glob_parent_3.1.0.tgz"; - url = "https://registry.yarnpkg.com/glob-parent/-/glob-parent-3.1.0.tgz"; - sha1 = "9e6af6299d8d3bd2bd40430832bd113df906c5ae"; + name = "get_symbol_description___get_symbol_description_1.0.0.tgz"; + url = "https://registry.yarnpkg.com/get-symbol-description/-/get-symbol-description-1.0.0.tgz"; + sha1 = "7fdb81c900101fbd564dd5f1a30af5aadc1e58d6"; }; } { @@ -3522,19 +2946,27 @@ }; } { - name = "glob___glob_7.1.7.tgz"; + name = "glob_parent___glob_parent_6.0.2.tgz"; path = fetchurl { - name = "glob___glob_7.1.7.tgz"; - url = "https://registry.yarnpkg.com/glob/-/glob-7.1.7.tgz"; - sha1 = "3b193e9233f01d42d0b3f78294bbeeb418f94a90"; + name = "glob_parent___glob_parent_6.0.2.tgz"; + url = "https://registry.yarnpkg.com/glob-parent/-/glob-parent-6.0.2.tgz"; + sha1 = "6d237d99083950c79290f24c7642a3de9a28f9e3"; }; } { - name = "global_modules___global_modules_1.0.0.tgz"; + name = "glob_to_regexp___glob_to_regexp_0.4.1.tgz"; path = fetchurl { - name = "global_modules___global_modules_1.0.0.tgz"; - url = "https://registry.yarnpkg.com/global-modules/-/global-modules-1.0.0.tgz"; - sha1 = "6d770f0eb523ac78164d72b5e71a8877265cc3ea"; + name = "glob_to_regexp___glob_to_regexp_0.4.1.tgz"; + url = "https://registry.yarnpkg.com/glob-to-regexp/-/glob-to-regexp-0.4.1.tgz"; + sha1 = "c75297087c851b9a578bd217dd59a92f59fe546e"; + }; + } + { + name = "glob___glob_7.2.0.tgz"; + path = fetchurl { + name = "glob___glob_7.2.0.tgz"; + url = "https://registry.yarnpkg.com/glob/-/glob-7.2.0.tgz"; + sha1 = "d15535af7732e02e948f4c41628bd910293f6023"; }; } { @@ -3545,14 +2977,6 @@ sha1 = "997605ad2345f27f51539bea26574421215c7780"; }; } - { - name = "global_prefix___global_prefix_1.0.2.tgz"; - path = fetchurl { - name = "global_prefix___global_prefix_1.0.2.tgz"; - url = "https://registry.yarnpkg.com/global-prefix/-/global-prefix-1.0.2.tgz"; - sha1 = "dbf743c6c14992593c655568cb66ed32c0122ebe"; - }; - } { name = "global_prefix___global_prefix_3.0.0.tgz"; path = fetchurl { @@ -3570,27 +2994,19 @@ }; } { - name = "globals___globals_12.4.0.tgz"; + name = "globals___globals_13.12.0.tgz"; path = fetchurl { - name = "globals___globals_12.4.0.tgz"; - url = "https://registry.yarnpkg.com/globals/-/globals-12.4.0.tgz"; - sha1 = "a18813576a41b00a24a97e7f815918c2e19925f8"; + name = "globals___globals_13.12.0.tgz"; + url = "https://registry.yarnpkg.com/globals/-/globals-13.12.0.tgz"; + sha1 = "4d733760304230a0082ed96e21e5c565f898089e"; }; } { - name = "globals___globals_13.9.0.tgz"; + name = "globby___globby_11.0.4.tgz"; path = fetchurl { - name = "globals___globals_13.9.0.tgz"; - url = "https://registry.yarnpkg.com/globals/-/globals-13.9.0.tgz"; - sha1 = "4bf2bf635b334a173fb1daf7c5e6b218ecdc06cb"; - }; - } - { - name = "globby___globby_11.0.3.tgz"; - path = fetchurl { - name = "globby___globby_11.0.3.tgz"; - url = "https://registry.yarnpkg.com/globby/-/globby-11.0.3.tgz"; - sha1 = "9b1f0cb523e171dd1ad8c7b2a9fb4b644b9593cb"; + name = "globby___globby_11.0.4.tgz"; + url = "https://registry.yarnpkg.com/globby/-/globby-11.0.4.tgz"; + sha1 = "2cbaff77c2f2a62e71e9b2813a67b97a3a3001a5"; }; } { @@ -3610,11 +3026,19 @@ }; } { - name = "graceful_fs___graceful_fs_4.2.6.tgz"; + name = "graceful_fs___graceful_fs_4.2.8.tgz"; path = fetchurl { - name = "graceful_fs___graceful_fs_4.2.6.tgz"; - url = "https://registry.yarnpkg.com/graceful-fs/-/graceful-fs-4.2.6.tgz"; - sha1 = "ff040b2b0853b23c3d31027523706f1885d76bee"; + name = "graceful_fs___graceful_fs_4.2.8.tgz"; + url = "https://registry.yarnpkg.com/graceful-fs/-/graceful-fs-4.2.8.tgz"; + sha1 = "e412b8d33f5e006593cbd3cee6df9f2cebbe802a"; + }; + } + { + name = "gzip_size___gzip_size_6.0.0.tgz"; + path = fetchurl { + name = "gzip_size___gzip_size_6.0.0.tgz"; + url = "https://registry.yarnpkg.com/gzip-size/-/gzip-size-6.0.0.tgz"; + sha1 = "065367fd50c239c0671cbcbad5be3e2eeb10e462"; }; } { @@ -3658,35 +3082,11 @@ }; } { - name = "has_value___has_value_0.3.1.tgz"; + name = "has_tostringtag___has_tostringtag_1.0.0.tgz"; path = fetchurl { - name = "has_value___has_value_0.3.1.tgz"; - url = "https://registry.yarnpkg.com/has-value/-/has-value-0.3.1.tgz"; - sha1 = "7b1f58bada62ca827ec0a2078025654845995e1f"; - }; - } - { - name = "has_value___has_value_1.0.0.tgz"; - path = fetchurl { - name = "has_value___has_value_1.0.0.tgz"; - url = "https://registry.yarnpkg.com/has-value/-/has-value-1.0.0.tgz"; - sha1 = "18b281da585b1c5c51def24c930ed29a0be6b177"; - }; - } - { - name = "has_values___has_values_0.1.4.tgz"; - path = fetchurl { - name = "has_values___has_values_0.1.4.tgz"; - url = "https://registry.yarnpkg.com/has-values/-/has-values-0.1.4.tgz"; - sha1 = "6d61de95d91dfca9b9a02089ad384bff8f62b771"; - }; - } - { - name = "has_values___has_values_1.0.0.tgz"; - path = fetchurl { - name = "has_values___has_values_1.0.0.tgz"; - url = "https://registry.yarnpkg.com/has-values/-/has-values-1.0.0.tgz"; - sha1 = "95b0b63fec2146619a6fe57fe75628d5a39efe4f"; + name = "has_tostringtag___has_tostringtag_1.0.0.tgz"; + url = "https://registry.yarnpkg.com/has-tostringtag/-/has-tostringtag-1.0.0.tgz"; + sha1 = "7e133818a7d394734f941e73c3d3f9291e658b25"; }; } { @@ -3697,22 +3097,6 @@ sha1 = "722d7cbfc1f6aa8241f16dd814e011e1f41e8796"; }; } - { - name = "hash_base___hash_base_3.1.0.tgz"; - path = fetchurl { - name = "hash_base___hash_base_3.1.0.tgz"; - url = "https://registry.yarnpkg.com/hash-base/-/hash-base-3.1.0.tgz"; - sha1 = "55c381d9e06e1d2997a883b4a3fddfe7f0d3af33"; - }; - } - { - name = "hash.js___hash.js_1.1.7.tgz"; - path = fetchurl { - name = "hash.js___hash.js_1.1.7.tgz"; - url = "https://registry.yarnpkg.com/hash.js/-/hash.js-1.1.7.tgz"; - sha1 = "0babca538e8d4ee4a0f8988d68866537a003cf42"; - }; - } { name = "hex_color_regex___hex_color_regex_1.1.0.tgz"; path = fetchurl { @@ -3729,14 +3113,6 @@ sha1 = "33371a65e3a83b267434e2b3f3b1b4c58aad4cf3"; }; } - { - name = "hmac_drbg___hmac_drbg_1.0.1.tgz"; - path = fetchurl { - name = "hmac_drbg___hmac_drbg_1.0.1.tgz"; - url = "https://registry.yarnpkg.com/hmac-drbg/-/hmac-drbg-1.0.1.tgz"; - sha1 = "d2745701025a6c775a6c545793ed502fc0c649a1"; - }; - } { name = "hoist_non_react_statics___hoist_non_react_statics_3.3.2.tgz"; path = fetchurl { @@ -3745,14 +3121,6 @@ sha1 = "ece0acaf71d62c2969c2ec59feff42a4b1a85b45"; }; } - { - name = "homedir_polyfill___homedir_polyfill_1.0.3.tgz"; - path = fetchurl { - name = "homedir_polyfill___homedir_polyfill_1.0.3.tgz"; - url = "https://registry.yarnpkg.com/homedir-polyfill/-/homedir-polyfill-1.0.3.tgz"; - sha1 = "743298cef4e5af3e194161fbadcc2151d3a058e8"; - }; - } { name = "hosted_git_info___hosted_git_info_2.8.9.tgz"; path = fetchurl { @@ -3802,11 +3170,11 @@ }; } { - name = "https_browserify___https_browserify_1.0.0.tgz"; + name = "human_signals___human_signals_2.1.0.tgz"; path = fetchurl { - name = "https_browserify___https_browserify_1.0.0.tgz"; - url = "https://registry.yarnpkg.com/https-browserify/-/https-browserify-1.0.0.tgz"; - sha1 = "ec06c10e0a34c0f2faf199f7fd7fc78fffd03c73"; + name = "human_signals___human_signals_2.1.0.tgz"; + url = "https://registry.yarnpkg.com/human-signals/-/human-signals-2.1.0.tgz"; + sha1 = "dc91fcba42e4d06e4abaed33b3e7a3c02f514ea0"; }; } { @@ -3818,27 +3186,11 @@ }; } { - name = "icss_utils___icss_utils_4.1.1.tgz"; + name = "icss_utils___icss_utils_5.1.0.tgz"; path = fetchurl { - name = "icss_utils___icss_utils_4.1.1.tgz"; - url = "https://registry.yarnpkg.com/icss-utils/-/icss-utils-4.1.1.tgz"; - sha1 = "21170b53789ee27447c2f47dd683081403f9a467"; - }; - } - { - name = "ieee754___ieee754_1.2.1.tgz"; - path = fetchurl { - name = "ieee754___ieee754_1.2.1.tgz"; - url = "https://registry.yarnpkg.com/ieee754/-/ieee754-1.2.1.tgz"; - sha1 = "8eb7a10a63fff25d15a57b001586d177d1b0d352"; - }; - } - { - name = "iferr___iferr_0.1.5.tgz"; - path = fetchurl { - name = "iferr___iferr_0.1.5.tgz"; - url = "https://registry.yarnpkg.com/iferr/-/iferr-0.1.5.tgz"; - sha1 = "c60eed69e6d8fdb6b3104a1fcbca1c192dc5b501"; + name = "icss_utils___icss_utils_5.1.0.tgz"; + url = "https://registry.yarnpkg.com/icss-utils/-/icss-utils-5.1.0.tgz"; + sha1 = "c6be6858abd013d768e98366ae47e25d5887b1ae"; }; } { @@ -3866,11 +3218,11 @@ }; } { - name = "import_fresh___import_fresh_2.0.0.tgz"; + name = "import_cwd___import_cwd_3.0.0.tgz"; path = fetchurl { - name = "import_fresh___import_fresh_2.0.0.tgz"; - url = "https://registry.yarnpkg.com/import-fresh/-/import-fresh-2.0.0.tgz"; - sha1 = "d81355c15612d386c61f9ddd3922d4304822a546"; + name = "import_cwd___import_cwd_3.0.0.tgz"; + url = "https://registry.yarnpkg.com/import-cwd/-/import-cwd-3.0.0.tgz"; + sha1 = "20845547718015126ea9b3676b7592fb8bd4cf92"; }; } { @@ -3881,6 +3233,14 @@ sha1 = "37162c25fcb9ebaa2e6e53d5b4d88ce17d9e0c2b"; }; } + { + name = "import_from___import_from_3.0.0.tgz"; + path = fetchurl { + name = "import_from___import_from_3.0.0.tgz"; + url = "https://registry.yarnpkg.com/import-from/-/import-from-3.0.0.tgz"; + sha1 = "055cfec38cd5a27d8057ca51376d7d3bf0891966"; + }; + } { name = "import_lazy___import_lazy_4.0.0.tgz"; path = fetchurl { @@ -3890,11 +3250,11 @@ }; } { - name = "import_local___import_local_2.0.0.tgz"; + name = "import_local___import_local_3.0.3.tgz"; path = fetchurl { - name = "import_local___import_local_2.0.0.tgz"; - url = "https://registry.yarnpkg.com/import-local/-/import-local-2.0.0.tgz"; - sha1 = "55070be38a5993cf18ef6db7e961f5bee5c5a09d"; + name = "import_local___import_local_3.0.3.tgz"; + url = "https://registry.yarnpkg.com/import-local/-/import-local-3.0.3.tgz"; + sha1 = "4d51c2c495ca9393da259ec66b62e022920211e0"; }; } { @@ -3913,22 +3273,6 @@ sha1 = "624f8f4497d619b2d9768531d58f4122854d7251"; }; } - { - name = "indexes_of___indexes_of_1.0.1.tgz"; - path = fetchurl { - name = "indexes_of___indexes_of_1.0.1.tgz"; - url = "https://registry.yarnpkg.com/indexes-of/-/indexes-of-1.0.1.tgz"; - sha1 = "f30f716c8e2bd346c7b67d3df3915566a7c05607"; - }; - } - { - name = "infer_owner___infer_owner_1.0.4.tgz"; - path = fetchurl { - name = "infer_owner___infer_owner_1.0.4.tgz"; - url = "https://registry.yarnpkg.com/infer-owner/-/infer-owner-1.0.4.tgz"; - sha1 = "c4cefcaa8e51051c2a40ba2ce8a3d27295af9467"; - }; - } { name = "inflight___inflight_1.0.6.tgz"; path = fetchurl { @@ -3945,22 +3289,6 @@ sha1 = "0fa2c64f932917c3433a0ded55363aae37416b7c"; }; } - { - name = "inherits___inherits_2.0.1.tgz"; - path = fetchurl { - name = "inherits___inherits_2.0.1.tgz"; - url = "https://registry.yarnpkg.com/inherits/-/inherits-2.0.1.tgz"; - sha1 = "b17d08d326b4423e568eff719f91b0b1cbdf69f1"; - }; - } - { - name = "inherits___inherits_2.0.3.tgz"; - path = fetchurl { - name = "inherits___inherits_2.0.3.tgz"; - url = "https://registry.yarnpkg.com/inherits/-/inherits-2.0.3.tgz"; - sha1 = "633c2c83e3da42a502f52466022480f4208261de"; - }; - } { name = "ini___ini_1.3.8.tgz"; path = fetchurl { @@ -3978,35 +3306,19 @@ }; } { - name = "interpret___interpret_1.4.0.tgz"; + name = "interpret___interpret_2.2.0.tgz"; path = fetchurl { - name = "interpret___interpret_1.4.0.tgz"; - url = "https://registry.yarnpkg.com/interpret/-/interpret-1.4.0.tgz"; - sha1 = "665ab8bc4da27a774a40584e812e3e0fa45b1a1e"; + name = "interpret___interpret_2.2.0.tgz"; + url = "https://registry.yarnpkg.com/interpret/-/interpret-2.2.0.tgz"; + sha1 = "1a78a0b5965c40a5416d007ad6f50ad27c417df9"; }; } { - name = "is_absolute_url___is_absolute_url_2.1.0.tgz"; + name = "is_absolute_url___is_absolute_url_3.0.3.tgz"; path = fetchurl { - name = "is_absolute_url___is_absolute_url_2.1.0.tgz"; - url = "https://registry.yarnpkg.com/is-absolute-url/-/is-absolute-url-2.1.0.tgz"; - sha1 = "50530dfb84fcc9aa7dbe7852e83a37b93b9f2aa6"; - }; - } - { - name = "is_accessor_descriptor___is_accessor_descriptor_0.1.6.tgz"; - path = fetchurl { - name = "is_accessor_descriptor___is_accessor_descriptor_0.1.6.tgz"; - url = "https://registry.yarnpkg.com/is-accessor-descriptor/-/is-accessor-descriptor-0.1.6.tgz"; - sha1 = "a9e12cb3ae8d876727eeef3843f8a0897b5c98d6"; - }; - } - { - name = "is_accessor_descriptor___is_accessor_descriptor_1.0.0.tgz"; - path = fetchurl { - name = "is_accessor_descriptor___is_accessor_descriptor_1.0.0.tgz"; - url = "https://registry.yarnpkg.com/is-accessor-descriptor/-/is-accessor-descriptor-1.0.0.tgz"; - sha1 = "169c2f6d3df1f992618072365c9b0ea1f6878656"; + name = "is_absolute_url___is_absolute_url_3.0.3.tgz"; + url = "https://registry.yarnpkg.com/is-absolute-url/-/is-absolute-url-3.0.3.tgz"; + sha1 = "96c6a22b6a23929b11ea0afb1836c36ad4a5d698"; }; } { @@ -4042,19 +3354,11 @@ }; } { - name = "is_bigint___is_bigint_1.0.2.tgz"; + name = "is_bigint___is_bigint_1.0.4.tgz"; path = fetchurl { - name = "is_bigint___is_bigint_1.0.2.tgz"; - url = "https://registry.yarnpkg.com/is-bigint/-/is-bigint-1.0.2.tgz"; - sha1 = "ffb381442503235ad245ea89e45b3dbff040ee5a"; - }; - } - { - name = "is_binary_path___is_binary_path_1.0.1.tgz"; - path = fetchurl { - name = "is_binary_path___is_binary_path_1.0.1.tgz"; - url = "https://registry.yarnpkg.com/is-binary-path/-/is-binary-path-1.0.1.tgz"; - sha1 = "75f16642b480f187a711c814161fd3a4a7655898"; + name = "is_bigint___is_bigint_1.0.4.tgz"; + url = "https://registry.yarnpkg.com/is-bigint/-/is-bigint-1.0.4.tgz"; + sha1 = "08147a1875bc2b32005d41ccd8291dffc6691df3"; }; } { @@ -4066,19 +3370,11 @@ }; } { - name = "is_boolean_object___is_boolean_object_1.1.1.tgz"; + name = "is_boolean_object___is_boolean_object_1.1.2.tgz"; path = fetchurl { - name = "is_boolean_object___is_boolean_object_1.1.1.tgz"; - url = "https://registry.yarnpkg.com/is-boolean-object/-/is-boolean-object-1.1.1.tgz"; - sha1 = "3c0878f035cb821228d350d2e1e36719716a3de8"; - }; - } - { - name = "is_buffer___is_buffer_1.1.6.tgz"; - path = fetchurl { - name = "is_buffer___is_buffer_1.1.6.tgz"; - url = "https://registry.yarnpkg.com/is-buffer/-/is-buffer-1.1.6.tgz"; - sha1 = "efaa2ea9daa0d7ab2ea13a97b2b8ad51fefbe8be"; + name = "is_boolean_object___is_boolean_object_1.1.2.tgz"; + url = "https://registry.yarnpkg.com/is-boolean-object/-/is-boolean-object-1.1.2.tgz"; + sha1 = "5c6dc200246dd9321ae4b885a114bb1f75f63719"; }; } { @@ -4090,11 +3386,11 @@ }; } { - name = "is_callable___is_callable_1.2.3.tgz"; + name = "is_callable___is_callable_1.2.4.tgz"; path = fetchurl { - name = "is_callable___is_callable_1.2.3.tgz"; - url = "https://registry.yarnpkg.com/is-callable/-/is-callable-1.2.3.tgz"; - sha1 = "8b1e0500b73a1d76c70487636f368e519de8db8e"; + name = "is_callable___is_callable_1.2.4.tgz"; + url = "https://registry.yarnpkg.com/is-callable/-/is-callable-1.2.4.tgz"; + sha1 = "47301d58dd0259407865547853df6d61fe471945"; }; } { @@ -4106,35 +3402,19 @@ }; } { - name = "is_core_module___is_core_module_2.4.0.tgz"; + name = "is_core_module___is_core_module_2.8.0.tgz"; path = fetchurl { - name = "is_core_module___is_core_module_2.4.0.tgz"; - url = "https://registry.yarnpkg.com/is-core-module/-/is-core-module-2.4.0.tgz"; - sha1 = "8e9fc8e15027b011418026e98f0e6f4d86305cc1"; + name = "is_core_module___is_core_module_2.8.0.tgz"; + url = "https://registry.yarnpkg.com/is-core-module/-/is-core-module-2.8.0.tgz"; + sha1 = "0321336c3d0925e497fd97f5d95cb114a5ccd548"; }; } { - name = "is_data_descriptor___is_data_descriptor_0.1.4.tgz"; + name = "is_date_object___is_date_object_1.0.5.tgz"; path = fetchurl { - name = "is_data_descriptor___is_data_descriptor_0.1.4.tgz"; - url = "https://registry.yarnpkg.com/is-data-descriptor/-/is-data-descriptor-0.1.4.tgz"; - sha1 = "0b5ee648388e2c860282e793f1856fec3f301b56"; - }; - } - { - name = "is_data_descriptor___is_data_descriptor_1.0.0.tgz"; - path = fetchurl { - name = "is_data_descriptor___is_data_descriptor_1.0.0.tgz"; - url = "https://registry.yarnpkg.com/is-data-descriptor/-/is-data-descriptor-1.0.0.tgz"; - sha1 = "d84876321d0e7add03990406abbbbd36ba9268c7"; - }; - } - { - name = "is_date_object___is_date_object_1.0.4.tgz"; - path = fetchurl { - name = "is_date_object___is_date_object_1.0.4.tgz"; - url = "https://registry.yarnpkg.com/is-date-object/-/is-date-object-1.0.4.tgz"; - sha1 = "550cfcc03afada05eea3dd30981c7b09551f73e5"; + name = "is_date_object___is_date_object_1.0.5.tgz"; + url = "https://registry.yarnpkg.com/is-date-object/-/is-date-object-1.0.5.tgz"; + sha1 = "0841d5536e724c25597bf6ea62e1bd38298df31f"; }; } { @@ -4145,46 +3425,6 @@ sha1 = "65a3a5958a1c5b63a706e1b333d7cd9f630d3fa5"; }; } - { - name = "is_descriptor___is_descriptor_0.1.6.tgz"; - path = fetchurl { - name = "is_descriptor___is_descriptor_0.1.6.tgz"; - url = "https://registry.yarnpkg.com/is-descriptor/-/is-descriptor-0.1.6.tgz"; - sha1 = "366d8240dde487ca51823b1ab9f07a10a78251ca"; - }; - } - { - name = "is_descriptor___is_descriptor_1.0.2.tgz"; - path = fetchurl { - name = "is_descriptor___is_descriptor_1.0.2.tgz"; - url = "https://registry.yarnpkg.com/is-descriptor/-/is-descriptor-1.0.2.tgz"; - sha1 = "3b159746a66604b04f8c81524ba365c5f14d86ec"; - }; - } - { - name = "is_directory___is_directory_0.3.1.tgz"; - path = fetchurl { - name = "is_directory___is_directory_0.3.1.tgz"; - url = "https://registry.yarnpkg.com/is-directory/-/is-directory-0.3.1.tgz"; - sha1 = "61339b6f2475fc772fd9c9d83f5c8575dc154ae1"; - }; - } - { - name = "is_extendable___is_extendable_0.1.1.tgz"; - path = fetchurl { - name = "is_extendable___is_extendable_0.1.1.tgz"; - url = "https://registry.yarnpkg.com/is-extendable/-/is-extendable-0.1.1.tgz"; - sha1 = "62b110e289a471418e3ec36a617d472e301dfc89"; - }; - } - { - name = "is_extendable___is_extendable_1.0.1.tgz"; - path = fetchurl { - name = "is_extendable___is_extendable_1.0.1.tgz"; - url = "https://registry.yarnpkg.com/is-extendable/-/is-extendable-1.0.1.tgz"; - sha1 = "a7470f9e426733d81bd81e1155264e3a3507cab4"; - }; - } { name = "is_extglob___is_extglob_2.1.1.tgz"; path = fetchurl { @@ -4193,14 +3433,6 @@ sha1 = "a88c02535791f02ed37c76a1b9ea9773c833f8c2"; }; } - { - name = "is_fullwidth_code_point___is_fullwidth_code_point_2.0.0.tgz"; - path = fetchurl { - name = "is_fullwidth_code_point___is_fullwidth_code_point_2.0.0.tgz"; - url = "https://registry.yarnpkg.com/is-fullwidth-code-point/-/is-fullwidth-code-point-2.0.0.tgz"; - sha1 = "a3b30a5c4f199183167aaab93beefae3ddfb654f"; - }; - } { name = "is_fullwidth_code_point___is_fullwidth_code_point_3.0.0.tgz"; path = fetchurl { @@ -4210,19 +3442,11 @@ }; } { - name = "is_glob___is_glob_3.1.0.tgz"; + name = "is_glob___is_glob_4.0.3.tgz"; path = fetchurl { - name = "is_glob___is_glob_3.1.0.tgz"; - url = "https://registry.yarnpkg.com/is-glob/-/is-glob-3.1.0.tgz"; - sha1 = "7ba5ae24217804ac70707b96922567486cc3e84a"; - }; - } - { - name = "is_glob___is_glob_4.0.1.tgz"; - path = fetchurl { - name = "is_glob___is_glob_4.0.1.tgz"; - url = "https://registry.yarnpkg.com/is-glob/-/is-glob-4.0.1.tgz"; - sha1 = "7567dbe9f2f5e2467bc77ab83c4a29482407a5dc"; + name = "is_glob___is_glob_4.0.3.tgz"; + url = "https://registry.yarnpkg.com/is-glob/-/is-glob-4.0.3.tgz"; + sha1 = "64f61e42cbbb2eec2071a9dac0b28ba1e65d5084"; }; } { @@ -4242,19 +3466,11 @@ }; } { - name = "is_number_object___is_number_object_1.0.5.tgz"; + name = "is_number_object___is_number_object_1.0.6.tgz"; path = fetchurl { - name = "is_number_object___is_number_object_1.0.5.tgz"; - url = "https://registry.yarnpkg.com/is-number-object/-/is-number-object-1.0.5.tgz"; - sha1 = "6edfaeed7950cff19afedce9fbfca9ee6dd289eb"; - }; - } - { - name = "is_number___is_number_3.0.0.tgz"; - path = fetchurl { - name = "is_number___is_number_3.0.0.tgz"; - url = "https://registry.yarnpkg.com/is-number/-/is-number-3.0.0.tgz"; - sha1 = "24fd6201a4782cf50561c810276afc7d12d71195"; + name = "is_number_object___is_number_object_1.0.6.tgz"; + url = "https://registry.yarnpkg.com/is-number-object/-/is-number-object-1.0.6.tgz"; + sha1 = "6a7aaf838c7f0686a50b4553f7e54a96494e89f0"; }; } { @@ -4265,14 +3481,6 @@ sha1 = "7535345b896734d5f80c4d06c50955527a14f12b"; }; } - { - name = "is_obj___is_obj_2.0.0.tgz"; - path = fetchurl { - name = "is_obj___is_obj_2.0.0.tgz"; - url = "https://registry.yarnpkg.com/is-obj/-/is-obj-2.0.0.tgz"; - sha1 = "473fb05d973705e3fd9620545018ca8e22ef4982"; - }; - } { name = "is_plain_obj___is_plain_obj_1.1.0.tgz"; path = fetchurl { @@ -4298,11 +3506,11 @@ }; } { - name = "is_regex___is_regex_1.1.3.tgz"; + name = "is_regex___is_regex_1.1.4.tgz"; path = fetchurl { - name = "is_regex___is_regex_1.1.3.tgz"; - url = "https://registry.yarnpkg.com/is-regex/-/is-regex-1.1.3.tgz"; - sha1 = "d029f9aff6448b93ebbe3f33dac71511fdcbef9f"; + name = "is_regex___is_regex_1.1.4.tgz"; + url = "https://registry.yarnpkg.com/is-regex/-/is-regex-1.1.4.tgz"; + sha1 = "eef5663cd59fa4c0ae339505323df6854bb15958"; }; } { @@ -4322,11 +3530,27 @@ }; } { - name = "is_string___is_string_1.0.6.tgz"; + name = "is_shared_array_buffer___is_shared_array_buffer_1.0.1.tgz"; path = fetchurl { - name = "is_string___is_string_1.0.6.tgz"; - url = "https://registry.yarnpkg.com/is-string/-/is-string-1.0.6.tgz"; - sha1 = "3fe5d5992fb0d93404f32584d4b0179a71b54a5f"; + name = "is_shared_array_buffer___is_shared_array_buffer_1.0.1.tgz"; + url = "https://registry.yarnpkg.com/is-shared-array-buffer/-/is-shared-array-buffer-1.0.1.tgz"; + sha1 = "97b0c85fbdacb59c9c446fe653b82cf2b5b7cfe6"; + }; + } + { + name = "is_stream___is_stream_2.0.1.tgz"; + path = fetchurl { + name = "is_stream___is_stream_2.0.1.tgz"; + url = "https://registry.yarnpkg.com/is-stream/-/is-stream-2.0.1.tgz"; + sha1 = "fac1e3d53b97ad5a9d0ae9cef2389f5810a5c077"; + }; + } + { + name = "is_string___is_string_1.0.7.tgz"; + path = fetchurl { + name = "is_string___is_string_1.0.7.tgz"; + url = "https://registry.yarnpkg.com/is-string/-/is-string-1.0.7.tgz"; + sha1 = "0dd12bf2006f255bb58f695110eff7491eebc0fd"; }; } { @@ -4354,19 +3578,11 @@ }; } { - name = "is_windows___is_windows_1.0.2.tgz"; + name = "is_weakref___is_weakref_1.0.1.tgz"; path = fetchurl { - name = "is_windows___is_windows_1.0.2.tgz"; - url = "https://registry.yarnpkg.com/is-windows/-/is-windows-1.0.2.tgz"; - sha1 = "d1850eb9791ecd18e6182ce12a30f396634bb19d"; - }; - } - { - name = "is_wsl___is_wsl_1.1.0.tgz"; - path = fetchurl { - name = "is_wsl___is_wsl_1.1.0.tgz"; - url = "https://registry.yarnpkg.com/is-wsl/-/is-wsl-1.1.0.tgz"; - sha1 = "1f16e4aa22b04d1336b66188a66af3c600c3a66d"; + name = "is_weakref___is_weakref_1.0.1.tgz"; + url = "https://registry.yarnpkg.com/is-weakref/-/is-weakref-1.0.1.tgz"; + sha1 = "842dba4ec17fa9ac9850df2d6efbc1737274f2a2"; }; } { @@ -4377,14 +3593,6 @@ sha1 = "8a18acfca9a8f4177e09abfc6038939b05d1eedf"; }; } - { - name = "isarray___isarray_1.0.0.tgz"; - path = fetchurl { - name = "isarray___isarray_1.0.0.tgz"; - url = "https://registry.yarnpkg.com/isarray/-/isarray-1.0.0.tgz"; - sha1 = "bb935d48582cba168c06834957a54a3e07124f11"; - }; - } { name = "isarray___isarray_2.0.5.tgz"; path = fetchurl { @@ -4393,6 +3601,14 @@ sha1 = "8af1e4c1221244cc62459faf38940d4e644a5723"; }; } + { + name = "isarray___isarray_1.0.0.tgz"; + path = fetchurl { + name = "isarray___isarray_1.0.0.tgz"; + url = "https://registry.yarnpkg.com/isarray/-/isarray-1.0.0.tgz"; + sha1 = "bb935d48582cba168c06834957a54a3e07124f11"; + }; + } { name = "isexe___isexe_2.0.0.tgz"; path = fetchurl { @@ -4401,14 +3617,6 @@ sha1 = "e8fbf374dc556ff8947a10dcb0572d633f2cfa10"; }; } - { - name = "isobject___isobject_2.1.0.tgz"; - path = fetchurl { - name = "isobject___isobject_2.1.0.tgz"; - url = "https://registry.yarnpkg.com/isobject/-/isobject-2.1.0.tgz"; - sha1 = "f065561096a3f1da2ef46272f815c840d87e0c89"; - }; - } { name = "isobject___isobject_3.0.1.tgz"; path = fetchurl { @@ -4418,11 +3626,11 @@ }; } { - name = "jest_worker___jest_worker_26.6.2.tgz"; + name = "jest_worker___jest_worker_27.3.1.tgz"; path = fetchurl { - name = "jest_worker___jest_worker_26.6.2.tgz"; - url = "https://registry.yarnpkg.com/jest-worker/-/jest-worker-26.6.2.tgz"; - sha1 = "7f72cbc4d643c365e27b9fd775f9d0eaa9c7a8ed"; + name = "jest_worker___jest_worker_27.3.1.tgz"; + url = "https://registry.yarnpkg.com/jest-worker/-/jest-worker-27.3.1.tgz"; + sha1 = "0def7feae5b8042be38479799aeb7b5facac24b2"; }; } { @@ -4522,35 +3730,11 @@ }; } { - name = "jsx_ast_utils___jsx_ast_utils_3.2.0.tgz"; + name = "jsx_ast_utils___jsx_ast_utils_3.2.1.tgz"; path = fetchurl { - name = "jsx_ast_utils___jsx_ast_utils_3.2.0.tgz"; - url = "https://registry.yarnpkg.com/jsx-ast-utils/-/jsx-ast-utils-3.2.0.tgz"; - sha1 = "41108d2cec408c3453c1bbe8a4aae9e1e2bd8f82"; - }; - } - { - name = "kind_of___kind_of_3.2.2.tgz"; - path = fetchurl { - name = "kind_of___kind_of_3.2.2.tgz"; - url = "https://registry.yarnpkg.com/kind-of/-/kind-of-3.2.2.tgz"; - sha1 = "31ea21a734bab9bbb0f32466d893aea51e4a3c64"; - }; - } - { - name = "kind_of___kind_of_4.0.0.tgz"; - path = fetchurl { - name = "kind_of___kind_of_4.0.0.tgz"; - url = "https://registry.yarnpkg.com/kind-of/-/kind-of-4.0.0.tgz"; - sha1 = "20813df3d712928b207378691a45066fae72dd57"; - }; - } - { - name = "kind_of___kind_of_5.1.0.tgz"; - path = fetchurl { - name = "kind_of___kind_of_5.1.0.tgz"; - url = "https://registry.yarnpkg.com/kind-of/-/kind-of-5.1.0.tgz"; - sha1 = "729c91e2d857b7a419a1f9aa65685c4c33f5845d"; + name = "jsx_ast_utils___jsx_ast_utils_3.2.1.tgz"; + url = "https://registry.yarnpkg.com/jsx-ast-utils/-/jsx-ast-utils-3.2.1.tgz"; + sha1 = "720b97bfe7d901b927d87c3773637ae8ea48781b"; }; } { @@ -4562,11 +3746,11 @@ }; } { - name = "klona___klona_2.0.4.tgz"; + name = "klona___klona_2.0.5.tgz"; path = fetchurl { - name = "klona___klona_2.0.4.tgz"; - url = "https://registry.yarnpkg.com/klona/-/klona-2.0.4.tgz"; - sha1 = "7bb1e3affb0cb8624547ef7e8f6708ea2e39dfc0"; + name = "klona___klona_2.0.5.tgz"; + url = "https://registry.yarnpkg.com/klona/-/klona-2.0.5.tgz"; + sha1 = "d166574d90076395d9963aa7a928fabb8d76afbc"; }; } { @@ -4593,14 +3777,6 @@ sha1 = "d321dbc4da30ba8bf3024e040fa5c14661f9193a"; }; } - { - name = "last_call_webpack_plugin___last_call_webpack_plugin_3.0.0.tgz"; - path = fetchurl { - name = "last_call_webpack_plugin___last_call_webpack_plugin_3.0.0.tgz"; - url = "https://registry.yarnpkg.com/last-call-webpack-plugin/-/last-call-webpack-plugin-3.0.0.tgz"; - sha1 = "9742df0e10e3cf46e5c0381c2de90d3a7a2d7555"; - }; - } { name = "levn___levn_0.4.1.tgz"; path = fetchurl { @@ -4617,6 +3793,14 @@ sha1 = "3b09924edf9f083c0490fdd4c0bc4421e04764ee"; }; } + { + name = "lilconfig___lilconfig_2.0.3.tgz"; + path = fetchurl { + name = "lilconfig___lilconfig_2.0.3.tgz"; + url = "https://registry.yarnpkg.com/lilconfig/-/lilconfig-2.0.3.tgz"; + sha1 = "68f3005e921dafbd2a2afb48379986aa6d2579fd"; + }; + } { name = "lines_and_columns___lines_and_columns_1.1.6.tgz"; path = fetchurl { @@ -4626,19 +3810,11 @@ }; } { - name = "load_json_file___load_json_file_4.0.0.tgz"; + name = "loader_runner___loader_runner_4.2.0.tgz"; path = fetchurl { - name = "load_json_file___load_json_file_4.0.0.tgz"; - url = "https://registry.yarnpkg.com/load-json-file/-/load-json-file-4.0.0.tgz"; - sha1 = "2f5f45ab91e33216234fd53adab668eb4ec0993b"; - }; - } - { - name = "loader_runner___loader_runner_2.4.0.tgz"; - path = fetchurl { - name = "loader_runner___loader_runner_2.4.0.tgz"; - url = "https://registry.yarnpkg.com/loader-runner/-/loader-runner-2.4.0.tgz"; - sha1 = "ed47066bfe534d7e84c4c7b9998c2a75607d9357"; + name = "loader_runner___loader_runner_4.2.0.tgz"; + url = "https://registry.yarnpkg.com/loader-runner/-/loader-runner-4.2.0.tgz"; + sha1 = "d7022380d66d14c5fb1d496b89864ebcfd478384"; }; } { @@ -4650,11 +3826,11 @@ }; } { - name = "loader_utils___loader_utils_2.0.0.tgz"; + name = "loader_utils___loader_utils_2.0.1.tgz"; path = fetchurl { - name = "loader_utils___loader_utils_2.0.0.tgz"; - url = "https://registry.yarnpkg.com/loader-utils/-/loader-utils-2.0.0.tgz"; - sha1 = "e4cace5b816d425a166b5f097e10cd12b36064b0"; + name = "loader_utils___loader_utils_2.0.1.tgz"; + url = "https://registry.yarnpkg.com/loader-utils/-/loader-utils-2.0.1.tgz"; + sha1 = "3b8d4386f42378d6434d32d7bc08e7a52d39575e"; }; } { @@ -4665,14 +3841,6 @@ sha1 = "2b568b265eec944c6d9c0de9c3dbbbca0354cd8e"; }; } - { - name = "locate_path___locate_path_3.0.0.tgz"; - path = fetchurl { - name = "locate_path___locate_path_3.0.0.tgz"; - url = "https://registry.yarnpkg.com/locate-path/-/locate-path-3.0.0.tgz"; - sha1 = "dbec3b3ab759758071b58fe59fc41871af21400e"; - }; - } { name = "locate_path___locate_path_5.0.0.tgz"; path = fetchurl { @@ -4681,6 +3849,14 @@ sha1 = "1afba396afd676a6d42504d0a67a3a7eb9f62aa0"; }; } + { + name = "lodash.castarray___lodash.castarray_4.4.0.tgz"; + path = fetchurl { + name = "lodash.castarray___lodash.castarray_4.4.0.tgz"; + url = "https://registry.yarnpkg.com/lodash.castarray/-/lodash.castarray-4.4.0.tgz"; + sha1 = "c02513515e309daddd4c24c60cfddcf5976d9115"; + }; + } { name = "lodash.clonedeep___lodash.clonedeep_4.5.0.tgz"; path = fetchurl { @@ -4697,6 +3873,14 @@ sha1 = "82d79bff30a67c4005ffd5e2515300ad9ca4d7af"; }; } + { + name = "lodash.isplainobject___lodash.isplainobject_4.0.6.tgz"; + path = fetchurl { + name = "lodash.isplainobject___lodash.isplainobject_4.0.6.tgz"; + url = "https://registry.yarnpkg.com/lodash.isplainobject/-/lodash.isplainobject-4.0.6.tgz"; + sha1 = "7c526a52d89b45c45cc690b88163be0497f550cb"; + }; + } { name = "lodash.memoize___lodash.memoize_4.1.2.tgz"; path = fetchurl { @@ -4714,11 +3898,11 @@ }; } { - name = "lodash.toarray___lodash.toarray_4.4.0.tgz"; + name = "lodash.topath___lodash.topath_4.5.2.tgz"; path = fetchurl { - name = "lodash.toarray___lodash.toarray_4.4.0.tgz"; - url = "https://registry.yarnpkg.com/lodash.toarray/-/lodash.toarray-4.4.0.tgz"; - sha1 = "24c4bfcd6b2fba38bfd0594db1179d8e9b656561"; + name = "lodash.topath___lodash.topath_4.5.2.tgz"; + url = "https://registry.yarnpkg.com/lodash.topath/-/lodash.topath-4.5.2.tgz"; + sha1 = "3616351f3bba61994a0931989660bd03254fd009"; }; } { @@ -4769,14 +3953,6 @@ sha1 = "71ee51fa7be4caec1a63839f7e682d8132d30caf"; }; } - { - name = "lru_cache___lru_cache_5.1.1.tgz"; - path = fetchurl { - name = "lru_cache___lru_cache_5.1.1.tgz"; - url = "https://registry.yarnpkg.com/lru-cache/-/lru-cache-5.1.1.tgz"; - sha1 = "1da27e6710271947695daf6848e847f01d84b920"; - }; - } { name = "lru_cache___lru_cache_6.0.0.tgz"; path = fetchurl { @@ -4793,14 +3969,6 @@ sha1 = "8e9cf5afddf44385c1da5bc2a6a0dbd10b03657e"; }; } - { - name = "make_dir___make_dir_2.1.0.tgz"; - path = fetchurl { - name = "make_dir___make_dir_2.1.0.tgz"; - url = "https://registry.yarnpkg.com/make-dir/-/make-dir-2.1.0.tgz"; - sha1 = "5f0310e18b8be898cc07009295a30ae41e91e6f5"; - }; - } { name = "make_dir___make_dir_3.1.0.tgz"; path = fetchurl { @@ -4809,22 +3977,6 @@ sha1 = "415e967046b3a7f1d185277d84aa58203726a13f"; }; } - { - name = "mamacro___mamacro_0.0.3.tgz"; - path = fetchurl { - name = "mamacro___mamacro_0.0.3.tgz"; - url = "https://registry.yarnpkg.com/mamacro/-/mamacro-0.0.3.tgz"; - sha1 = "ad2c9576197c9f1abf308d0787865bd975a3f3e4"; - }; - } - { - name = "map_cache___map_cache_0.2.2.tgz"; - path = fetchurl { - name = "map_cache___map_cache_0.2.2.tgz"; - url = "https://registry.yarnpkg.com/map-cache/-/map-cache-0.2.2.tgz"; - sha1 = "c32abd0bd6525d9b051645bb4f26ac5dc98a0dbf"; - }; - } { name = "map_obj___map_obj_1.0.1.tgz"; path = fetchurl { @@ -4834,19 +3986,11 @@ }; } { - name = "map_obj___map_obj_4.2.1.tgz"; + name = "map_obj___map_obj_4.3.0.tgz"; path = fetchurl { - name = "map_obj___map_obj_4.2.1.tgz"; - url = "https://registry.yarnpkg.com/map-obj/-/map-obj-4.2.1.tgz"; - sha1 = "e4ea399dbc979ae735c83c863dd31bdf364277b7"; - }; - } - { - name = "map_visit___map_visit_1.0.0.tgz"; - path = fetchurl { - name = "map_visit___map_visit_1.0.0.tgz"; - url = "https://registry.yarnpkg.com/map-visit/-/map-visit-1.0.0.tgz"; - sha1 = "ecdca8f13144e660f1b5bd41f12f3479d98dfb8f"; + name = "map_obj___map_obj_4.3.0.tgz"; + url = "https://registry.yarnpkg.com/map-obj/-/map-obj-4.3.0.tgz"; + sha1 = "9304f906e93faae70880da102a9f1df0ea8bb05a"; }; } { @@ -4857,14 +4001,6 @@ sha1 = "4ddadd67308e780cf16a47685878ee27b736a0a3"; }; } - { - name = "md5.js___md5.js_1.3.5.tgz"; - path = fetchurl { - name = "md5.js___md5.js_1.3.5.tgz"; - url = "https://registry.yarnpkg.com/md5.js/-/md5.js-1.3.5.tgz"; - sha1 = "b5d07b8e3216e3e27cd728d72f70d1e6a342005f"; - }; - } { name = "mdast_util_from_markdown___mdast_util_from_markdown_0.8.5.tgz"; path = fetchurl { @@ -4897,30 +4033,6 @@ sha1 = "7113fc4281917d63ce29b43446f701e68c25ba50"; }; } - { - name = "mdn_data___mdn_data_2.0.4.tgz"; - path = fetchurl { - name = "mdn_data___mdn_data_2.0.4.tgz"; - url = "https://registry.yarnpkg.com/mdn-data/-/mdn-data-2.0.4.tgz"; - sha1 = "699b3c38ac6f1d728091a64650b65d388502fd5b"; - }; - } - { - name = "memory_fs___memory_fs_0.4.1.tgz"; - path = fetchurl { - name = "memory_fs___memory_fs_0.4.1.tgz"; - url = "https://registry.yarnpkg.com/memory-fs/-/memory-fs-0.4.1.tgz"; - sha1 = "3a9a20b8462523e447cfbc7e8bb80ed667bfc552"; - }; - } - { - name = "memory_fs___memory_fs_0.5.0.tgz"; - path = fetchurl { - name = "memory_fs___memory_fs_0.5.0.tgz"; - url = "https://registry.yarnpkg.com/memory-fs/-/memory-fs-0.5.0.tgz"; - sha1 = "324c01288b88652966d161db77838720845a8e3c"; - }; - } { name = "meow___meow_9.0.0.tgz"; path = fetchurl { @@ -4961,14 +4073,6 @@ sha1 = "d13436138eea826383e822449c9a5c50ee44665a"; }; } - { - name = "micromatch___micromatch_3.1.10.tgz"; - path = fetchurl { - name = "micromatch___micromatch_3.1.10.tgz"; - url = "https://registry.yarnpkg.com/micromatch/-/micromatch-3.1.10.tgz"; - sha1 = "70859bc95c9840952f359a068a3fc49f9ecfac23"; - }; - } { name = "micromatch___micromatch_4.0.4.tgz"; path = fetchurl { @@ -4978,11 +4082,35 @@ }; } { - name = "miller_rabin___miller_rabin_4.0.1.tgz"; + name = "mime_db___mime_db_1.50.0.tgz"; path = fetchurl { - name = "miller_rabin___miller_rabin_4.0.1.tgz"; - url = "https://registry.yarnpkg.com/miller-rabin/-/miller-rabin-4.0.1.tgz"; - sha1 = "f080351c865b0dc562a8462966daa53543c78a4d"; + name = "mime_db___mime_db_1.50.0.tgz"; + url = "https://registry.yarnpkg.com/mime-db/-/mime-db-1.50.0.tgz"; + sha1 = "abd4ac94e98d3c0e185016c67ab45d5fde40c11f"; + }; + } + { + name = "mime_types___mime_types_2.1.33.tgz"; + path = fetchurl { + name = "mime_types___mime_types_2.1.33.tgz"; + url = "https://registry.yarnpkg.com/mime-types/-/mime-types-2.1.33.tgz"; + sha1 = "1fa12a904472fafd068e48d9e8401f74d3f70edb"; + }; + } + { + name = "mime___mime_2.5.2.tgz"; + path = fetchurl { + name = "mime___mime_2.5.2.tgz"; + url = "https://registry.yarnpkg.com/mime/-/mime-2.5.2.tgz"; + sha1 = "6e3dc6cc2b9510643830e5f19d5cb753da5eeabe"; + }; + } + { + name = "mimic_fn___mimic_fn_2.1.0.tgz"; + path = fetchurl { + name = "mimic_fn___mimic_fn_2.1.0.tgz"; + url = "https://registry.yarnpkg.com/mimic-fn/-/mimic-fn-2.1.0.tgz"; + sha1 = "7ed2c2ccccaf84d3ffcb7a69b57711fc2083401b"; }; } { @@ -5002,35 +4130,19 @@ }; } { - name = "mini_css_extract_plugin___mini_css_extract_plugin_0.8.2.tgz"; + name = "mini_css_extract_plugin___mini_css_extract_plugin_1.6.2.tgz"; path = fetchurl { - name = "mini_css_extract_plugin___mini_css_extract_plugin_0.8.2.tgz"; - url = "https://registry.yarnpkg.com/mini-css-extract-plugin/-/mini-css-extract-plugin-0.8.2.tgz"; - sha1 = "a875e169beb27c88af77dd962771c9eedc3da161"; + name = "mini_css_extract_plugin___mini_css_extract_plugin_1.6.2.tgz"; + url = "https://registry.yarnpkg.com/mini-css-extract-plugin/-/mini-css-extract-plugin-1.6.2.tgz"; + sha1 = "83172b4fd812f8fc4a09d6f6d16f924f53990ca8"; }; } { - name = "mini_svg_data_uri___mini_svg_data_uri_1.3.3.tgz"; + name = "mini_svg_data_uri___mini_svg_data_uri_1.4.3.tgz"; path = fetchurl { - name = "mini_svg_data_uri___mini_svg_data_uri_1.3.3.tgz"; - url = "https://registry.yarnpkg.com/mini-svg-data-uri/-/mini-svg-data-uri-1.3.3.tgz"; - sha1 = "91d2c09f45e056e5e1043340b8b37ba7b50f4fac"; - }; - } - { - name = "minimalistic_assert___minimalistic_assert_1.0.1.tgz"; - path = fetchurl { - name = "minimalistic_assert___minimalistic_assert_1.0.1.tgz"; - url = "https://registry.yarnpkg.com/minimalistic-assert/-/minimalistic-assert-1.0.1.tgz"; - sha1 = "2e194de044626d4a10e7f7fbc00ce73e83e4d5c7"; - }; - } - { - name = "minimalistic_crypto_utils___minimalistic_crypto_utils_1.0.1.tgz"; - path = fetchurl { - name = "minimalistic_crypto_utils___minimalistic_crypto_utils_1.0.1.tgz"; - url = "https://registry.yarnpkg.com/minimalistic-crypto-utils/-/minimalistic-crypto-utils-1.0.1.tgz"; - sha1 = "f6c00c1c0b082246e5c4d99dfb8c7c083b2b582a"; + name = "mini_svg_data_uri___mini_svg_data_uri_1.4.3.tgz"; + url = "https://registry.yarnpkg.com/mini-svg-data-uri/-/mini-svg-data-uri-1.4.3.tgz"; + sha1 = "43177b2e93766ba338931a3e2a84a3dfd3a222b8"; }; } { @@ -5057,78 +4169,6 @@ sha1 = "67d66014b66a6a8aaa0c083c5fd58df4e4e97602"; }; } - { - name = "minipass_collect___minipass_collect_1.0.2.tgz"; - path = fetchurl { - name = "minipass_collect___minipass_collect_1.0.2.tgz"; - url = "https://registry.yarnpkg.com/minipass-collect/-/minipass-collect-1.0.2.tgz"; - sha1 = "22b813bf745dc6edba2576b940022ad6edc8c617"; - }; - } - { - name = "minipass_flush___minipass_flush_1.0.5.tgz"; - path = fetchurl { - name = "minipass_flush___minipass_flush_1.0.5.tgz"; - url = "https://registry.yarnpkg.com/minipass-flush/-/minipass-flush-1.0.5.tgz"; - sha1 = "82e7135d7e89a50ffe64610a787953c4c4cbb373"; - }; - } - { - name = "minipass_pipeline___minipass_pipeline_1.2.4.tgz"; - path = fetchurl { - name = "minipass_pipeline___minipass_pipeline_1.2.4.tgz"; - url = "https://registry.yarnpkg.com/minipass-pipeline/-/minipass-pipeline-1.2.4.tgz"; - sha1 = "68472f79711c084657c067c5c6ad93cddea8214c"; - }; - } - { - name = "minipass___minipass_3.1.3.tgz"; - path = fetchurl { - name = "minipass___minipass_3.1.3.tgz"; - url = "https://registry.yarnpkg.com/minipass/-/minipass-3.1.3.tgz"; - sha1 = "7d42ff1f39635482e15f9cdb53184deebd5815fd"; - }; - } - { - name = "minizlib___minizlib_2.1.2.tgz"; - path = fetchurl { - name = "minizlib___minizlib_2.1.2.tgz"; - url = "https://registry.yarnpkg.com/minizlib/-/minizlib-2.1.2.tgz"; - sha1 = "e90d3466ba209b932451508a11ce3d3632145931"; - }; - } - { - name = "mississippi___mississippi_3.0.0.tgz"; - path = fetchurl { - name = "mississippi___mississippi_3.0.0.tgz"; - url = "https://registry.yarnpkg.com/mississippi/-/mississippi-3.0.0.tgz"; - sha1 = "ea0a3291f97e0b5e8776b363d5f0a12d94c67022"; - }; - } - { - name = "mixin_deep___mixin_deep_1.3.2.tgz"; - path = fetchurl { - name = "mixin_deep___mixin_deep_1.3.2.tgz"; - url = "https://registry.yarnpkg.com/mixin-deep/-/mixin-deep-1.3.2.tgz"; - sha1 = "1120b43dc359a785dce65b55b82e257ccf479566"; - }; - } - { - name = "mkdirp___mkdirp_0.5.5.tgz"; - path = fetchurl { - name = "mkdirp___mkdirp_0.5.5.tgz"; - url = "https://registry.yarnpkg.com/mkdirp/-/mkdirp-0.5.5.tgz"; - sha1 = "d91cefd62d1436ca0f41620e251288d420099def"; - }; - } - { - name = "mkdirp___mkdirp_1.0.4.tgz"; - path = fetchurl { - name = "mkdirp___mkdirp_1.0.4.tgz"; - url = "https://registry.yarnpkg.com/mkdirp/-/mkdirp-1.0.4.tgz"; - sha1 = "3eb5ed62622756d79a5f0e2a221dfebad75c2f7e"; - }; - } { name = "modern_normalize___modern_normalize_1.1.0.tgz"; path = fetchurl { @@ -5137,22 +4177,6 @@ sha1 = "da8e80140d9221426bd4f725c6e11283d34f90b7"; }; } - { - name = "moment___moment_2.29.1.tgz"; - path = fetchurl { - name = "moment___moment_2.29.1.tgz"; - url = "https://registry.yarnpkg.com/moment/-/moment-2.29.1.tgz"; - sha1 = "b2be769fa31940be9eeea6469c075e35006fa3d3"; - }; - } - { - name = "move_concurrently___move_concurrently_1.0.1.tgz"; - path = fetchurl { - name = "move_concurrently___move_concurrently_1.0.1.tgz"; - url = "https://registry.yarnpkg.com/move-concurrently/-/move-concurrently-1.0.1.tgz"; - sha1 = "be2c005fda32e0b29af1f05d7c4b33214c701f92"; - }; - } { name = "ms___ms_2.0.0.tgz"; path = fetchurl { @@ -5178,27 +4202,19 @@ }; } { - name = "nan___nan_2.14.2.tgz"; + name = "nanocolors___nanocolors_0.1.12.tgz"; path = fetchurl { - name = "nan___nan_2.14.2.tgz"; - url = "https://registry.yarnpkg.com/nan/-/nan-2.14.2.tgz"; - sha1 = "f5376400695168f4cc694ac9393d0c9585eeea19"; + name = "nanocolors___nanocolors_0.1.12.tgz"; + url = "https://registry.yarnpkg.com/nanocolors/-/nanocolors-0.1.12.tgz"; + sha1 = "8577482c58cbd7b5bb1681db4cf48f11a87fd5f6"; }; } { - name = "nanoid___nanoid_3.1.23.tgz"; + name = "nanoid___nanoid_3.1.30.tgz"; path = fetchurl { - name = "nanoid___nanoid_3.1.23.tgz"; - url = "https://registry.yarnpkg.com/nanoid/-/nanoid-3.1.23.tgz"; - sha1 = "f744086ce7c2bc47ee0a8472574d5c78e4183a81"; - }; - } - { - name = "nanomatch___nanomatch_1.2.13.tgz"; - path = fetchurl { - name = "nanomatch___nanomatch_1.2.13.tgz"; - url = "https://registry.yarnpkg.com/nanomatch/-/nanomatch-1.2.13.tgz"; - sha1 = "b87a8aa4fc0de8fe6be88895b38983ff265bd119"; + name = "nanoid___nanoid_3.1.30.tgz"; + url = "https://registry.yarnpkg.com/nanoid/-/nanoid-3.1.30.tgz"; + sha1 = "63f93cc548d2a113dc5dfbc63bfa09e2b9b64362"; }; } { @@ -5218,35 +4234,19 @@ }; } { - name = "nice_try___nice_try_1.0.5.tgz"; + name = "node_emoji___node_emoji_1.11.0.tgz"; path = fetchurl { - name = "nice_try___nice_try_1.0.5.tgz"; - url = "https://registry.yarnpkg.com/nice-try/-/nice-try-1.0.5.tgz"; - sha1 = "a3378a7696ce7d223e88fc9b764bd7ef1089e366"; + name = "node_emoji___node_emoji_1.11.0.tgz"; + url = "https://registry.yarnpkg.com/node-emoji/-/node-emoji-1.11.0.tgz"; + sha1 = "69a0150e6946e2f115e9d7ea4df7971e2628301c"; }; } { - name = "node_emoji___node_emoji_1.10.0.tgz"; + name = "node_releases___node_releases_2.0.1.tgz"; path = fetchurl { - name = "node_emoji___node_emoji_1.10.0.tgz"; - url = "https://registry.yarnpkg.com/node-emoji/-/node-emoji-1.10.0.tgz"; - sha1 = "8886abd25d9c7bb61802a658523d1f8d2a89b2da"; - }; - } - { - name = "node_libs_browser___node_libs_browser_2.2.1.tgz"; - path = fetchurl { - name = "node_libs_browser___node_libs_browser_2.2.1.tgz"; - url = "https://registry.yarnpkg.com/node-libs-browser/-/node-libs-browser-2.2.1.tgz"; - sha1 = "b64f513d18338625f90346d27b0d235e631f6425"; - }; - } - { - name = "node_releases___node_releases_1.1.72.tgz"; - path = fetchurl { - name = "node_releases___node_releases_1.1.72.tgz"; - url = "https://registry.yarnpkg.com/node-releases/-/node-releases-1.1.72.tgz"; - sha1 = "14802ab6b1039a79a0c7d662b610a5bbd76eacbe"; + name = "node_releases___node_releases_2.0.1.tgz"; + url = "https://registry.yarnpkg.com/node-releases/-/node-releases-2.0.1.tgz"; + sha1 = "3d1d395f204f1f2f29a54358b9fb678765ad2fc5"; }; } { @@ -5258,19 +4258,11 @@ }; } { - name = "normalize_package_data___normalize_package_data_3.0.2.tgz"; + name = "normalize_package_data___normalize_package_data_3.0.3.tgz"; path = fetchurl { - name = "normalize_package_data___normalize_package_data_3.0.2.tgz"; - url = "https://registry.yarnpkg.com/normalize-package-data/-/normalize-package-data-3.0.2.tgz"; - sha1 = "cae5c410ae2434f9a6c1baa65d5bc3b9366c8699"; - }; - } - { - name = "normalize_path___normalize_path_2.1.1.tgz"; - path = fetchurl { - name = "normalize_path___normalize_path_2.1.1.tgz"; - url = "https://registry.yarnpkg.com/normalize-path/-/normalize-path-2.1.1.tgz"; - sha1 = "1ab28b556e198363a8c1a6f7e6fa20137fe6aed9"; + name = "normalize_package_data___normalize_package_data_3.0.3.tgz"; + url = "https://registry.yarnpkg.com/normalize-package-data/-/normalize-package-data-3.0.3.tgz"; + sha1 = "dbcc3e2da59509a0983422884cd172eefdfa525e"; }; } { @@ -5298,27 +4290,27 @@ }; } { - name = "normalize_url___normalize_url_1.9.1.tgz"; + name = "normalize_url___normalize_url_6.1.0.tgz"; path = fetchurl { - name = "normalize_url___normalize_url_1.9.1.tgz"; - url = "https://registry.yarnpkg.com/normalize-url/-/normalize-url-1.9.1.tgz"; - sha1 = "2cc0d66b31ea23036458436e3620d85954c66c3c"; + name = "normalize_url___normalize_url_6.1.0.tgz"; + url = "https://registry.yarnpkg.com/normalize-url/-/normalize-url-6.1.0.tgz"; + sha1 = "40d0885b535deffe3f3147bec877d05fe4c5668a"; }; } { - name = "normalize_url___normalize_url_3.3.0.tgz"; + name = "npm_run_path___npm_run_path_4.0.1.tgz"; path = fetchurl { - name = "normalize_url___normalize_url_3.3.0.tgz"; - url = "https://registry.yarnpkg.com/normalize-url/-/normalize-url-3.3.0.tgz"; - sha1 = "b2e1c4dc4f7c6d57743df733a4f5978d18650559"; + name = "npm_run_path___npm_run_path_4.0.1.tgz"; + url = "https://registry.yarnpkg.com/npm-run-path/-/npm-run-path-4.0.1.tgz"; + sha1 = "b7ecd1e5ed53da8e37a55e1c2269e0b97ed748ea"; }; } { - name = "nth_check___nth_check_1.0.2.tgz"; + name = "nth_check___nth_check_2.0.1.tgz"; path = fetchurl { - name = "nth_check___nth_check_1.0.2.tgz"; - url = "https://registry.yarnpkg.com/nth-check/-/nth-check-1.0.2.tgz"; - sha1 = "b2bd295c37e3dd58a3bf0700376663ba4d9cf05c"; + name = "nth_check___nth_check_2.0.1.tgz"; + url = "https://registry.yarnpkg.com/nth-check/-/nth-check-2.0.1.tgz"; + sha1 = "2efe162f5c3da06a28959fbd3db75dbeea9f0fc2"; }; } { @@ -5337,14 +4329,6 @@ sha1 = "2109adc7965887cfc05cbbd442cac8bfbb360863"; }; } - { - name = "object_copy___object_copy_0.1.0.tgz"; - path = fetchurl { - name = "object_copy___object_copy_0.1.0.tgz"; - url = "https://registry.yarnpkg.com/object-copy/-/object-copy-0.1.0.tgz"; - sha1 = "7e7d858b781bd7c991a41ba975ed3812754e998c"; - }; - } { name = "object_hash___object_hash_2.2.0.tgz"; path = fetchurl { @@ -5354,11 +4338,11 @@ }; } { - name = "object_inspect___object_inspect_1.10.3.tgz"; + name = "object_inspect___object_inspect_1.11.0.tgz"; path = fetchurl { - name = "object_inspect___object_inspect_1.10.3.tgz"; - url = "https://registry.yarnpkg.com/object-inspect/-/object-inspect-1.10.3.tgz"; - sha1 = "c2aa7d2d09f50c99375704f7a0adf24c5782d369"; + name = "object_inspect___object_inspect_1.11.0.tgz"; + url = "https://registry.yarnpkg.com/object-inspect/-/object-inspect-1.11.0.tgz"; + sha1 = "9dceb146cedd4148a0d9e51ab88d34cf509922b1"; }; } { @@ -5377,14 +4361,6 @@ sha1 = "1c47f272df277f3b1daf061677d9c82e2322c60e"; }; } - { - name = "object_visit___object_visit_1.0.1.tgz"; - path = fetchurl { - name = "object_visit___object_visit_1.0.1.tgz"; - url = "https://registry.yarnpkg.com/object-visit/-/object-visit-1.0.1.tgz"; - sha1 = "f79c4493af0c5377b59fe39d395e41042dd045bb"; - }; - } { name = "object.assign___object.assign_4.1.2.tgz"; path = fetchurl { @@ -5394,43 +4370,35 @@ }; } { - name = "object.entries___object.entries_1.1.4.tgz"; + name = "object.entries___object.entries_1.1.5.tgz"; path = fetchurl { - name = "object.entries___object.entries_1.1.4.tgz"; - url = "https://registry.yarnpkg.com/object.entries/-/object.entries-1.1.4.tgz"; - sha1 = "43ccf9a50bc5fd5b649d45ab1a579f24e088cafd"; + name = "object.entries___object.entries_1.1.5.tgz"; + url = "https://registry.yarnpkg.com/object.entries/-/object.entries-1.1.5.tgz"; + sha1 = "e1acdd17c4de2cd96d5a08487cfb9db84d881861"; }; } { - name = "object.fromentries___object.fromentries_2.0.4.tgz"; + name = "object.fromentries___object.fromentries_2.0.5.tgz"; path = fetchurl { - name = "object.fromentries___object.fromentries_2.0.4.tgz"; - url = "https://registry.yarnpkg.com/object.fromentries/-/object.fromentries-2.0.4.tgz"; - sha1 = "26e1ba5c4571c5c6f0890cef4473066456a120b8"; + name = "object.fromentries___object.fromentries_2.0.5.tgz"; + url = "https://registry.yarnpkg.com/object.fromentries/-/object.fromentries-2.0.5.tgz"; + sha1 = "7b37b205109c21e741e605727fe8b0ad5fa08251"; }; } { - name = "object.getownpropertydescriptors___object.getownpropertydescriptors_2.1.2.tgz"; + name = "object.hasown___object.hasown_1.1.0.tgz"; path = fetchurl { - name = "object.getownpropertydescriptors___object.getownpropertydescriptors_2.1.2.tgz"; - url = "https://registry.yarnpkg.com/object.getownpropertydescriptors/-/object.getownpropertydescriptors-2.1.2.tgz"; - sha1 = "1bd63aeacf0d5d2d2f31b5e393b03a7c601a23f7"; + name = "object.hasown___object.hasown_1.1.0.tgz"; + url = "https://registry.yarnpkg.com/object.hasown/-/object.hasown-1.1.0.tgz"; + sha1 = "7232ed266f34d197d15cac5880232f7a4790afe5"; }; } { - name = "object.pick___object.pick_1.3.0.tgz"; + name = "object.values___object.values_1.1.5.tgz"; path = fetchurl { - name = "object.pick___object.pick_1.3.0.tgz"; - url = "https://registry.yarnpkg.com/object.pick/-/object.pick-1.3.0.tgz"; - sha1 = "87a10ac4c1694bd2e1cbf53591a66141fb5dd747"; - }; - } - { - name = "object.values___object.values_1.1.4.tgz"; - path = fetchurl { - name = "object.values___object.values_1.1.4.tgz"; - url = "https://registry.yarnpkg.com/object.values/-/object.values-1.1.4.tgz"; - sha1 = "0d273762833e816b693a637d30073e7051535b30"; + name = "object.values___object.values_1.1.5.tgz"; + url = "https://registry.yarnpkg.com/object.values/-/object.values-1.1.5.tgz"; + sha1 = "959f63e3ce9ef108720333082131e4a459b716ac"; }; } { @@ -5441,6 +4409,22 @@ sha1 = "583b1aa775961d4b113ac17d9c50baef9dd76bd1"; }; } + { + name = "onetime___onetime_5.1.2.tgz"; + path = fetchurl { + name = "onetime___onetime_5.1.2.tgz"; + url = "https://registry.yarnpkg.com/onetime/-/onetime-5.1.2.tgz"; + sha1 = "d0e96ebb56b07476df1dd9c4806e5237985ca45e"; + }; + } + { + name = "opener___opener_1.5.2.tgz"; + path = fetchurl { + name = "opener___opener_1.5.2.tgz"; + url = "https://registry.yarnpkg.com/opener/-/opener-1.5.2.tgz"; + sha1 = "5d37e1f35077b9dcac4301372271afdeb2a13598"; + }; + } { name = "optimist___optimist_0.3.7.tgz"; path = fetchurl { @@ -5449,14 +4433,6 @@ sha1 = "c90941ad59e4273328923074d2cf2e7cbc6ec0d9"; }; } - { - name = "optimize_css_assets_webpack_plugin___optimize_css_assets_webpack_plugin_5.0.6.tgz"; - path = fetchurl { - name = "optimize_css_assets_webpack_plugin___optimize_css_assets_webpack_plugin_5.0.6.tgz"; - url = "https://registry.yarnpkg.com/optimize-css-assets-webpack-plugin/-/optimize-css-assets-webpack-plugin-5.0.6.tgz"; - sha1 = "abad0c6c11a632201794f75ddba3ce13e32ae80e"; - }; - } { name = "optionator___optionator_0.8.3.tgz"; path = fetchurl { @@ -5473,14 +4449,6 @@ sha1 = "4f236a6373dae0566a6d43e1326674f50c291499"; }; } - { - name = "os_browserify___os_browserify_0.3.0.tgz"; - path = fetchurl { - name = "os_browserify___os_browserify_0.3.0.tgz"; - url = "https://registry.yarnpkg.com/os-browserify/-/os-browserify-0.3.0.tgz"; - sha1 = "854373c7f5c2315914fc9bfc6bd8238fdda1ec27"; - }; - } { name = "p_limit___p_limit_1.3.0.tgz"; path = fetchurl { @@ -5513,14 +4481,6 @@ sha1 = "20a0103b222a70c8fd39cc2e580680f3dde5ec43"; }; } - { - name = "p_locate___p_locate_3.0.0.tgz"; - path = fetchurl { - name = "p_locate___p_locate_3.0.0.tgz"; - url = "https://registry.yarnpkg.com/p-locate/-/p-locate-3.0.0.tgz"; - sha1 = "322d69a05c0264b25997d9f40cd8a891ab0064a4"; - }; - } { name = "p_locate___p_locate_4.1.0.tgz"; path = fetchurl { @@ -5529,14 +4489,6 @@ sha1 = "a3428bb7088b3a60292f66919278b7c297ad4f07"; }; } - { - name = "p_map___p_map_4.0.0.tgz"; - path = fetchurl { - name = "p_map___p_map_4.0.0.tgz"; - url = "https://registry.yarnpkg.com/p-map/-/p-map-4.0.0.tgz"; - sha1 = "bb2f95a5eda2ec168ec9274e06a747c3e2904d2b"; - }; - } { name = "p_try___p_try_1.0.0.tgz"; path = fetchurl { @@ -5553,22 +4505,6 @@ sha1 = "cb2868540e313d61de58fafbe35ce9004d5540e6"; }; } - { - name = "pako___pako_1.0.11.tgz"; - path = fetchurl { - name = "pako___pako_1.0.11.tgz"; - url = "https://registry.yarnpkg.com/pako/-/pako-1.0.11.tgz"; - sha1 = "6c9599d340d54dfd3946380252a35705a6b992bf"; - }; - } - { - name = "parallel_transform___parallel_transform_1.2.0.tgz"; - path = fetchurl { - name = "parallel_transform___parallel_transform_1.2.0.tgz"; - url = "https://registry.yarnpkg.com/parallel-transform/-/parallel-transform-1.2.0.tgz"; - sha1 = "9049ca37d6cb2182c3b1d2c720be94d14a5814fc"; - }; - } { name = "parent_module___parent_module_1.0.1.tgz"; path = fetchurl { @@ -5577,14 +4513,6 @@ sha1 = "691d2709e78c79fae3a156622452d00762caaaa2"; }; } - { - name = "parse_asn1___parse_asn1_5.1.6.tgz"; - path = fetchurl { - name = "parse_asn1___parse_asn1_5.1.6.tgz"; - url = "https://registry.yarnpkg.com/parse-asn1/-/parse-asn1-5.1.6.tgz"; - sha1 = "385080a3ec13cb62a62d39409cb3e88844cdaed4"; - }; - } { name = "parse_entities___parse_entities_2.0.0.tgz"; path = fetchurl { @@ -5593,14 +4521,6 @@ sha1 = "53c6eb5b9314a1f4ec99fa0fdf7ce01ecda0cbe8"; }; } - { - name = "parse_json___parse_json_4.0.0.tgz"; - path = fetchurl { - name = "parse_json___parse_json_4.0.0.tgz"; - url = "https://registry.yarnpkg.com/parse-json/-/parse-json-4.0.0.tgz"; - sha1 = "be35f5425be1f7f6c747184f98a788cb99477ee0"; - }; - } { name = "parse_json___parse_json_5.2.0.tgz"; path = fetchurl { @@ -5609,38 +4529,6 @@ sha1 = "c76fc66dee54231c962b22bcc8a72cf2f99753cd"; }; } - { - name = "parse_passwd___parse_passwd_1.0.0.tgz"; - path = fetchurl { - name = "parse_passwd___parse_passwd_1.0.0.tgz"; - url = "https://registry.yarnpkg.com/parse-passwd/-/parse-passwd-1.0.0.tgz"; - sha1 = "6d5b934a456993b23d37f40a382d6f1666a8e5c6"; - }; - } - { - name = "pascalcase___pascalcase_0.1.1.tgz"; - path = fetchurl { - name = "pascalcase___pascalcase_0.1.1.tgz"; - url = "https://registry.yarnpkg.com/pascalcase/-/pascalcase-0.1.1.tgz"; - sha1 = "b363e55e8006ca6fe21784d2db22bd15d7917f14"; - }; - } - { - name = "path_browserify___path_browserify_0.0.1.tgz"; - path = fetchurl { - name = "path_browserify___path_browserify_0.0.1.tgz"; - url = "https://registry.yarnpkg.com/path-browserify/-/path-browserify-0.0.1.tgz"; - sha1 = "e6c4ddd7ed3aa27c68a20cc4e50e1a4ee83bbc4a"; - }; - } - { - name = "path_dirname___path_dirname_1.0.2.tgz"; - path = fetchurl { - name = "path_dirname___path_dirname_1.0.2.tgz"; - url = "https://registry.yarnpkg.com/path-dirname/-/path-dirname-1.0.2.tgz"; - sha1 = "cc33d24d525e099a5388c0336c6e32b9160609e0"; - }; - } { name = "path_exists___path_exists_3.0.0.tgz"; path = fetchurl { @@ -5665,14 +4553,6 @@ sha1 = "174b9268735534ffbc7ace6bf53a5a9e1b5c5f5f"; }; } - { - name = "path_key___path_key_2.0.1.tgz"; - path = fetchurl { - name = "path_key___path_key_2.0.1.tgz"; - url = "https://registry.yarnpkg.com/path-key/-/path-key-2.0.1.tgz"; - sha1 = "411cadb574c5a140d3a4b1910d40d80cc9f40b40"; - }; - } { name = "path_key___path_key_3.1.1.tgz"; path = fetchurl { @@ -5697,14 +4577,6 @@ sha1 = "887b3ba9d84393e87a0a0b9f4cb756198b53548a"; }; } - { - name = "path_type___path_type_3.0.0.tgz"; - path = fetchurl { - name = "path_type___path_type_3.0.0.tgz"; - url = "https://registry.yarnpkg.com/path-type/-/path-type-3.0.0.tgz"; - sha1 = "cef31dc8e0a1a3bb0d105c0cd97cf3bf47f4e36f"; - }; - } { name = "path_type___path_type_4.0.0.tgz"; path = fetchurl { @@ -5713,15 +4585,23 @@ sha1 = "84ed01c0a7ba380afe09d90a8c180dcd9d03043b"; }; } + { - name = "pbkdf2___pbkdf2_3.1.2.tgz"; + name = "picocolors___picocolors_0.2.1.tgz"; path = fetchurl { - name = "pbkdf2___pbkdf2_3.1.2.tgz"; - url = "https://registry.yarnpkg.com/pbkdf2/-/pbkdf2-3.1.2.tgz"; - sha1 = "dd822aa0887580e52f1a039dc3eda108efae3075"; + name = "picocolors___picocolors_0.2.1.tgz"; + url = "https://registry.yarnpkg.com/picocolors/-/picocolors-0.2.1.tgz"; + sha1 = "570670f793646851d1ba135996962abad587859f"; + }; + } + { + name = "picocolors___picocolors_1.0.0.tgz"; + path = fetchurl { + name = "picocolors___picocolors_1.0.0.tgz"; + url = "https://registry.yarnpkg.com/picocolors/-/picocolors-1.0.0.tgz"; + sha1 = "cb5bdc74ff3f51892236eaf79d68bc44564ab81c"; }; } - { name = "picomatch___picomatch_2.3.0.tgz"; path = fetchurl { @@ -5730,22 +4610,6 @@ sha1 = "f1f061de8f6a4bf022892e2d128234fb98302972"; }; } - { - name = "pify___pify_3.0.0.tgz"; - path = fetchurl { - name = "pify___pify_3.0.0.tgz"; - url = "https://registry.yarnpkg.com/pify/-/pify-3.0.0.tgz"; - sha1 = "e5a4acd2c101fdf3d9a4d07f0dbc4db49dd28176"; - }; - } - { - name = "pify___pify_4.0.1.tgz"; - path = fetchurl { - 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{ - name = "randomfill___randomfill_1.0.4.tgz"; - path = fetchurl { - name = "randomfill___randomfill_1.0.4.tgz"; - url = "https://registry.yarnpkg.com/randomfill/-/randomfill-1.0.4.tgz"; - sha1 = "c92196fc86ab42be983f1bf31778224931d61458"; - }; - } { name = "react_dom___react_dom_16.14.0.tgz"; path = fetchurl { @@ -6419,11 +5131,11 @@ }; } { - name = "react_flatpickr___react_flatpickr_3.10.7.tgz"; + name = "react_flatpickr___react_flatpickr_3.10.5.tgz"; path = fetchurl { - name = "react_flatpickr___react_flatpickr_3.10.7.tgz"; - url = "https://registry.yarnpkg.com/react-flatpickr/-/react-flatpickr-3.10.7.tgz"; - sha1 = "bca6da2a1ccf23bb884881e2a1723073f0bfb391"; + name = "react_flatpickr___react_flatpickr_3.10.5.tgz"; + url = "https://registry.yarnpkg.com/react-flatpickr/-/react-flatpickr-3.10.5.tgz"; + sha1 = "a12bd3eea8689064981cb62856d9ea60c353a295"; }; } { @@ -6443,19 +5155,27 @@ }; } { - name = "react_router_dom___react_router_dom_5.2.0.tgz"; + name = "react_is___react_is_17.0.2.tgz"; path = fetchurl { - name = "react_router_dom___react_router_dom_5.2.0.tgz"; - url = "https://registry.yarnpkg.com/react-router-dom/-/react-router-dom-5.2.0.tgz"; - sha1 = "9e65a4d0c45e13289e66c7b17c7e175d0ea15662"; + name = "react_is___react_is_17.0.2.tgz"; + url = "https://registry.yarnpkg.com/react-is/-/react-is-17.0.2.tgz"; + sha1 = "e691d4a8e9c789365655539ab372762b0efb54f0"; }; } { - name = "react_router___react_router_5.2.0.tgz"; + name = "react_router_dom___react_router_dom_5.3.0.tgz"; path = fetchurl { - name = "react_router___react_router_5.2.0.tgz"; - url = "https://registry.yarnpkg.com/react-router/-/react-router-5.2.0.tgz"; - sha1 = "424e75641ca8747fbf76e5ecca69781aa37ea293"; + name = "react_router_dom___react_router_dom_5.3.0.tgz"; + url = "https://registry.yarnpkg.com/react-router-dom/-/react-router-dom-5.3.0.tgz"; + sha1 = "da1bfb535a0e89a712a93b97dd76f47ad1f32363"; + }; + } + { + name = "react_router___react_router_5.2.1.tgz"; + path = fetchurl { + name = "react_router___react_router_5.2.1.tgz"; + url = "https://registry.yarnpkg.com/react-router/-/react-router-5.2.1.tgz"; + sha1 = "4d2e4e9d5ae9425091845b8dbc6d9d276239774d"; }; } { @@ -6474,14 +5194,6 @@ sha1 = "94d776ddd0aaa37da3eda8fc5b6b18a4c9a3114d"; }; } - { - name = "read_pkg_up___read_pkg_up_3.0.0.tgz"; - path = fetchurl { - name = "read_pkg_up___read_pkg_up_3.0.0.tgz"; - url = "https://registry.yarnpkg.com/read-pkg-up/-/read-pkg-up-3.0.0.tgz"; - sha1 = "3ed496685dba0f8fe118d0691dc51f4a1ff96f07"; - }; - } { name = "read_pkg_up___read_pkg_up_7.0.1.tgz"; path = fetchurl { @@ -6490,14 +5202,6 @@ sha1 = "f3a6135758459733ae2b95638056e1854e7ef507"; }; } - { - name = "read_pkg___read_pkg_3.0.0.tgz"; - path = fetchurl { - name = "read_pkg___read_pkg_3.0.0.tgz"; - url = "https://registry.yarnpkg.com/read-pkg/-/read-pkg-3.0.0.tgz"; - sha1 = "9cbc686978fee65d16c00e2b19c237fcf6e38389"; - }; - } { name = "read_pkg___read_pkg_5.2.0.tgz"; path = fetchurl { @@ -6523,19 +5227,19 @@ }; } { - name = "readdirp___readdirp_2.2.1.tgz"; + name = "readdirp___readdirp_3.6.0.tgz"; path = fetchurl { - name = "readdirp___readdirp_2.2.1.tgz"; - url = "https://registry.yarnpkg.com/readdirp/-/readdirp-2.2.1.tgz"; - sha1 = "0e87622a3325aa33e892285caf8b4e846529a525"; + name = "readdirp___readdirp_3.6.0.tgz"; + url = "https://registry.yarnpkg.com/readdirp/-/readdirp-3.6.0.tgz"; + sha1 = "74a370bd857116e245b29cc97340cd431a02a6c7"; }; } { - name = "readdirp___readdirp_3.5.0.tgz"; + name = "rechoir___rechoir_0.7.1.tgz"; path = fetchurl { - name = "readdirp___readdirp_3.5.0.tgz"; - url = "https://registry.yarnpkg.com/readdirp/-/readdirp-3.5.0.tgz"; - sha1 = "9ba74c019b15d365278d2e91bb8c48d7b4d42c9e"; + name = "rechoir___rechoir_0.7.1.tgz"; + url = "https://registry.yarnpkg.com/rechoir/-/rechoir-0.7.1.tgz"; + sha1 = "9478a96a1ca135b5e88fc027f03ee92d6c645686"; }; } { @@ -6555,11 +5259,11 @@ }; } { - name = "regenerate_unicode_properties___regenerate_unicode_properties_8.2.0.tgz"; + name = "regenerate_unicode_properties___regenerate_unicode_properties_9.0.0.tgz"; path = fetchurl { - name = "regenerate_unicode_properties___regenerate_unicode_properties_8.2.0.tgz"; - url = "https://registry.yarnpkg.com/regenerate-unicode-properties/-/regenerate-unicode-properties-8.2.0.tgz"; - sha1 = "e5de7111d655e7ba60c057dbe9ff37c87e65cdec"; + name = "regenerate_unicode_properties___regenerate_unicode_properties_9.0.0.tgz"; + url = "https://registry.yarnpkg.com/regenerate-unicode-properties/-/regenerate-unicode-properties-9.0.0.tgz"; + sha1 = "54d09c7115e1f53dc2314a974b32c1c344efe326"; }; } { @@ -6571,11 +5275,11 @@ }; } { - name = "regenerator_runtime___regenerator_runtime_0.13.7.tgz"; + name = "regenerator_runtime___regenerator_runtime_0.13.9.tgz"; path = fetchurl { - name = "regenerator_runtime___regenerator_runtime_0.13.7.tgz"; - url = "https://registry.yarnpkg.com/regenerator-runtime/-/regenerator-runtime-0.13.7.tgz"; - sha1 = "cac2dacc8a1ea675feaabaeb8ae833898ae46f55"; + name = "regenerator_runtime___regenerator_runtime_0.13.9.tgz"; + url = "https://registry.yarnpkg.com/regenerator-runtime/-/regenerator-runtime-0.13.9.tgz"; + sha1 = "8925742a98ffd90814988d7566ad30ca3b263b52"; }; } { @@ -6586,14 +5290,6 @@ sha1 = "c98da154683671c9c4dcb16ece736517e1b7feb4"; }; } - { - name = "regex_not___regex_not_1.0.2.tgz"; - path = fetchurl { - name = "regex_not___regex_not_1.0.2.tgz"; - url = "https://registry.yarnpkg.com/regex-not/-/regex-not-1.0.2.tgz"; - sha1 = "1f4ece27e00b0b65e0247a6810e6a85d83a5752c"; - }; - } { name = "regexp.prototype.flags___regexp.prototype.flags_1.3.1.tgz"; path = fetchurl { @@ -6603,19 +5299,19 @@ }; } { - name = "regexpp___regexpp_3.1.0.tgz"; + name = "regexpp___regexpp_3.2.0.tgz"; path = fetchurl { - name = "regexpp___regexpp_3.1.0.tgz"; - url = "https://registry.yarnpkg.com/regexpp/-/regexpp-3.1.0.tgz"; - sha1 = "206d0ad0a5648cffbdb8ae46438f3dc51c9f78e2"; + name = "regexpp___regexpp_3.2.0.tgz"; + url = "https://registry.yarnpkg.com/regexpp/-/regexpp-3.2.0.tgz"; + sha1 = "0425a2768d8f23bad70ca4b90461fa2f1213e1b2"; }; } { - name = "regexpu_core___regexpu_core_4.7.1.tgz"; + name = "regexpu_core___regexpu_core_4.8.0.tgz"; path = fetchurl { - name = "regexpu_core___regexpu_core_4.7.1.tgz"; - url = "https://registry.yarnpkg.com/regexpu-core/-/regexpu-core-4.7.1.tgz"; - sha1 = "2dea5a9a07233298fbf0db91fa9abc4c6e0f8ad6"; + name = "regexpu_core___regexpu_core_4.8.0.tgz"; + url = "https://registry.yarnpkg.com/regexpu-core/-/regexpu-core-4.8.0.tgz"; + sha1 = "e5605ba361b67b1718478501327502f4479a98f0"; }; } { @@ -6627,11 +5323,11 @@ }; } { - name = "regjsparser___regjsparser_0.6.9.tgz"; + name = "regjsparser___regjsparser_0.7.0.tgz"; path = fetchurl { - name = "regjsparser___regjsparser_0.6.9.tgz"; - url = "https://registry.yarnpkg.com/regjsparser/-/regjsparser-0.6.9.tgz"; - sha1 = "b489eef7c9a2ce43727627011429cf833a7183e6"; + name = "regjsparser___regjsparser_0.7.0.tgz"; + url = "https://registry.yarnpkg.com/regjsparser/-/regjsparser-0.7.0.tgz"; + sha1 = "a6b667b54c885e18b52554cb4960ef71187e9968"; }; } { @@ -6658,22 +5354,6 @@ sha1 = "d15d9bf71a402f40287ebe36067b66d54868e425"; }; } - { - name = "remove_trailing_separator___remove_trailing_separator_1.1.0.tgz"; - path = fetchurl { - name = "remove_trailing_separator___remove_trailing_separator_1.1.0.tgz"; - url = "https://registry.yarnpkg.com/remove-trailing-separator/-/remove-trailing-separator-1.1.0.tgz"; - sha1 = "c24bce2a283adad5bc3f58e0d48249b92379d8ef"; - }; - } - { - name = "repeat_element___repeat_element_1.1.4.tgz"; - path = fetchurl { - name = "repeat_element___repeat_element_1.1.4.tgz"; - url = "https://registry.yarnpkg.com/repeat-element/-/repeat-element-1.1.4.tgz"; - sha1 = "be681520847ab58c7568ac75fbfad28ed42d39e9"; - }; - } { name = "repeat_string___repeat_string_1.6.1.tgz"; path = fetchurl { @@ -6682,14 +5362,6 @@ sha1 = "8dcae470e1c88abc2d600fff4a776286da75e637"; }; } - { - name = "require_directory___require_directory_2.1.1.tgz"; - path = fetchurl { - name = "require_directory___require_directory_2.1.1.tgz"; - url = "https://registry.yarnpkg.com/require-directory/-/require-directory-2.1.1.tgz"; - sha1 = "8c64ad5fd30dab1c976e2344ffe7f792a6a6df42"; - }; - } { name = "require_from_string___require_from_string_2.0.2.tgz"; path = fetchurl { @@ -6699,35 +5371,11 @@ }; } { - name = "require_main_filename___require_main_filename_2.0.0.tgz"; + name = "resolve_cwd___resolve_cwd_3.0.0.tgz"; path = fetchurl { - name = "require_main_filename___require_main_filename_2.0.0.tgz"; - url = "https://registry.yarnpkg.com/require-main-filename/-/require-main-filename-2.0.0.tgz"; - sha1 = "d0b329ecc7cc0f61649f62215be69af54aa8989b"; - }; - } - { - name = "resolve_cwd___resolve_cwd_2.0.0.tgz"; - path = fetchurl { - name = "resolve_cwd___resolve_cwd_2.0.0.tgz"; - url = "https://registry.yarnpkg.com/resolve-cwd/-/resolve-cwd-2.0.0.tgz"; - sha1 = "00a9f7387556e27038eae232caa372a6a59b665a"; - }; - } - { - name = "resolve_dir___resolve_dir_1.0.1.tgz"; - path = fetchurl { - name = "resolve_dir___resolve_dir_1.0.1.tgz"; - url = "https://registry.yarnpkg.com/resolve-dir/-/resolve-dir-1.0.1.tgz"; - sha1 = "79a40644c362be82f26effe739c9bb5382046f43"; - }; - } - { - name = "resolve_from___resolve_from_3.0.0.tgz"; - path = fetchurl { - name = "resolve_from___resolve_from_3.0.0.tgz"; - url = "https://registry.yarnpkg.com/resolve-from/-/resolve-from-3.0.0.tgz"; - sha1 = "b22c7af7d9d6881bc8b6e653335eebcb0a188748"; + name = "resolve_cwd___resolve_cwd_3.0.0.tgz"; + url = "https://registry.yarnpkg.com/resolve-cwd/-/resolve-cwd-3.0.0.tgz"; + sha1 = "0f0075f1bb2544766cf73ba6a6e2adfebcb13f2d"; }; } { @@ -6754,14 +5402,6 @@ sha1 = "99d02224d3cf263689becbb393bc560313025dcd"; }; } - { - name = "resolve_url___resolve_url_0.2.1.tgz"; - path = fetchurl { - name = "resolve_url___resolve_url_0.2.1.tgz"; - url = "https://registry.yarnpkg.com/resolve-url/-/resolve-url-0.2.1.tgz"; - sha1 = "2c637fe77c893afd2a663fe21aa9080068e2052a"; - }; - } { name = "resolve___resolve_1.20.0.tgz"; path = fetchurl { @@ -6778,14 +5418,6 @@ sha1 = "d41016293d4a8586a39ca5d9b5f15cbea1f55e46"; }; } - { - name = "ret___ret_0.1.15.tgz"; - path = fetchurl { - name = "ret___ret_0.1.15.tgz"; - url = "https://registry.yarnpkg.com/ret/-/ret-0.1.15.tgz"; - sha1 = "b8a4825d5bdb1fc3f6f53c2bc33f81388681c7bc"; - }; - } { name = "reusify___reusify_1.0.4.tgz"; path = fetchurl { @@ -6810,14 +5442,6 @@ sha1 = "43374e2e2ca0968b0ef1523460b7d730ff22eeb3"; }; } - { - name = "rimraf___rimraf_2.7.1.tgz"; - path = fetchurl { - name = "rimraf___rimraf_2.7.1.tgz"; - url = "https://registry.yarnpkg.com/rimraf/-/rimraf-2.7.1.tgz"; - sha1 = "35797f13a7fdadc566142c29d4f07ccad483e3ec"; - }; - } { name = "rimraf___rimraf_3.0.2.tgz"; path = fetchurl { @@ -6826,14 +5450,6 @@ sha1 = "f1a5402ba6220ad52cc1282bac1ae3aa49fd061a"; }; } - { - name = "ripemd160___ripemd160_2.0.2.tgz"; - path = fetchurl { - name = "ripemd160___ripemd160_2.0.2.tgz"; - url = "https://registry.yarnpkg.com/ripemd160/-/ripemd160-2.0.2.tgz"; - sha1 = "a1c1a6f624751577ba5d07914cbc92850585890c"; - }; - } { name = "run_parallel___run_parallel_1.2.0.tgz"; path = fetchurl { @@ -6842,14 +5458,6 @@ sha1 = "66d1368da7bdf921eb9d95bd1a9229e7f21a43ee"; }; } - { - name = "run_queue___run_queue_1.0.3.tgz"; - path = fetchurl { - name = "run_queue___run_queue_1.0.3.tgz"; - url = "https://registry.yarnpkg.com/run-queue/-/run-queue-1.0.3.tgz"; - sha1 = "e848396f057d223f24386924618e25694161ec47"; - }; - } { name = "rw___rw_1.3.3.tgz"; path = fetchurl { @@ -6874,30 +5482,6 @@ sha1 = "991ec69d296e0313747d59bdfd2b745c35f8828d"; }; } - { - name = "safe_regex___safe_regex_1.1.0.tgz"; - path = fetchurl { - name = "safe_regex___safe_regex_1.1.0.tgz"; - url = "https://registry.yarnpkg.com/safe-regex/-/safe-regex-1.1.0.tgz"; - sha1 = "40a3669f3b077d1e943d44629e157dd48023bf2e"; - }; - } - { - name = "safer_buffer___safer_buffer_2.1.2.tgz"; - path = fetchurl { - name = "safer_buffer___safer_buffer_2.1.2.tgz"; - url = "https://registry.yarnpkg.com/safer-buffer/-/safer-buffer-2.1.2.tgz"; - sha1 = "44fa161b0187b9549dd84bb91802f9bd8385cd6a"; - }; - } - { - name = "sax___sax_1.2.4.tgz"; - path = fetchurl { - name = "sax___sax_1.2.4.tgz"; - url = "https://registry.yarnpkg.com/sax/-/sax-1.2.4.tgz"; - sha1 = "2816234e2378bddc4e5354fab5caa895df7100d9"; - }; - } { name = "scheduler___scheduler_0.19.1.tgz"; path = fetchurl { @@ -6906,14 +5490,6 @@ sha1 = "4f3e2ed2c1a7d65681f4c854fa8c5a1ccb40f196"; }; } - { - name = "schema_utils___schema_utils_1.0.0.tgz"; - path = fetchurl { - name = "schema_utils___schema_utils_1.0.0.tgz"; - url = "https://registry.yarnpkg.com/schema-utils/-/schema-utils-1.0.0.tgz"; - sha1 = "0b79a93204d7b600d4b2850d1f66c2a34951c770"; - }; - } { name = "schema_utils___schema_utils_2.7.1.tgz"; path = fetchurl { @@ -6923,11 +5499,11 @@ }; } { - name = "schema_utils___schema_utils_3.0.0.tgz"; + name = "schema_utils___schema_utils_3.1.1.tgz"; path = fetchurl { - name = "schema_utils___schema_utils_3.0.0.tgz"; - url = "https://registry.yarnpkg.com/schema-utils/-/schema-utils-3.0.0.tgz"; - sha1 = "67502f6aa2b66a2d4032b4279a2944978a0913ef"; + name = "schema_utils___schema_utils_3.1.1.tgz"; + url = "https://registry.yarnpkg.com/schema-utils/-/schema-utils-3.1.1.tgz"; + sha1 = "bc74c4b6b6995c1d88f76a8b77bea7219e0c8281"; }; } { @@ -6963,51 +5539,19 @@ }; } { - name = "serialize_javascript___serialize_javascript_4.0.0.tgz"; + name = "serialize_javascript___serialize_javascript_6.0.0.tgz"; path = fetchurl { - name = "serialize_javascript___serialize_javascript_4.0.0.tgz"; - url = "https://registry.yarnpkg.com/serialize-javascript/-/serialize-javascript-4.0.0.tgz"; - sha1 = "b525e1238489a5ecfc42afacc3fe99e666f4b1aa"; + name = "serialize_javascript___serialize_javascript_6.0.0.tgz"; + url = "https://registry.yarnpkg.com/serialize-javascript/-/serialize-javascript-6.0.0.tgz"; + sha1 = "efae5d88f45d7924141da8b5c3a7a7e663fefeb8"; }; } { - name = "serialize_javascript___serialize_javascript_5.0.1.tgz"; + name = "shallow_clone___shallow_clone_3.0.1.tgz"; path = fetchurl { - name = "serialize_javascript___serialize_javascript_5.0.1.tgz"; - url = "https://registry.yarnpkg.com/serialize-javascript/-/serialize-javascript-5.0.1.tgz"; - sha1 = "7886ec848049a462467a97d3d918ebb2aaf934f4"; - }; - } - { - name = "set_blocking___set_blocking_2.0.0.tgz"; - path = fetchurl { - name = "set_blocking___set_blocking_2.0.0.tgz"; - url = "https://registry.yarnpkg.com/set-blocking/-/set-blocking-2.0.0.tgz"; - sha1 = "045f9782d011ae9a6803ddd382b24392b3d890f7"; - }; - } - { - name = "set_value___set_value_2.0.1.tgz"; - path = fetchurl { - name = "set_value___set_value_2.0.1.tgz"; - url = "https://registry.yarnpkg.com/set-value/-/set-value-2.0.1.tgz"; - sha1 = "a18d40530e6f07de4228c7defe4227af8cad005b"; - }; - } - { - name = "setimmediate___setimmediate_1.0.5.tgz"; - path = fetchurl { - name = "setimmediate___setimmediate_1.0.5.tgz"; - url = "https://registry.yarnpkg.com/setimmediate/-/setimmediate-1.0.5.tgz"; - sha1 = "290cbb232e306942d7d7ea9b83732ab7856f8285"; - }; - } - { - name = "sha.js___sha.js_2.4.11.tgz"; - path = fetchurl { - name = "sha.js___sha.js_2.4.11.tgz"; - url = "https://registry.yarnpkg.com/sha.js/-/sha.js-2.4.11.tgz"; - sha1 = "37a5cf0b81ecbc6943de109ba2960d1b26584ae7"; + name = "shallow_clone___shallow_clone_3.0.1.tgz"; + url = "https://registry.yarnpkg.com/shallow-clone/-/shallow-clone-3.0.1.tgz"; + sha1 = "8f2981ad92531f55035b01fb230769a40e02efa3"; }; } { @@ -7026,14 +5570,6 @@ sha1 = "9bb9a429bd6086a0cfb03962d14cfdf420ffba12"; }; } - { - name = "shebang_command___shebang_command_1.2.0.tgz"; - path = fetchurl { - name = "shebang_command___shebang_command_1.2.0.tgz"; - url = "https://registry.yarnpkg.com/shebang-command/-/shebang-command-1.2.0.tgz"; - sha1 = "44aac65b695b03398968c39f363fee5deafdf1ea"; - }; - } { name = "shebang_command___shebang_command_2.0.0.tgz"; path = fetchurl { @@ -7042,14 +5578,6 @@ sha1 = "ccd0af4f8835fbdc265b82461aaf0c36663f34ea"; }; } - { - name = "shebang_regex___shebang_regex_1.0.0.tgz"; - path = fetchurl { - name = "shebang_regex___shebang_regex_1.0.0.tgz"; - url = "https://registry.yarnpkg.com/shebang-regex/-/shebang-regex-1.0.0.tgz"; - sha1 = "da42f49740c0b42db2ca9728571cb190c98efea3"; - }; - } { name = "shebang_regex___shebang_regex_3.0.0.tgz"; path = fetchurl { @@ -7067,11 +5595,11 @@ }; } { - name = "signal_exit___signal_exit_3.0.3.tgz"; + name = "signal_exit___signal_exit_3.0.5.tgz"; path = fetchurl { - name = "signal_exit___signal_exit_3.0.3.tgz"; - url = "https://registry.yarnpkg.com/signal-exit/-/signal-exit-3.0.3.tgz"; - sha1 = "a1410c2edd8f077b08b4e253c8eacfcaf057461c"; + name = "signal_exit___signal_exit_3.0.5.tgz"; + url = "https://registry.yarnpkg.com/signal-exit/-/signal-exit-3.0.5.tgz"; + sha1 = "9e3e8cc0c75a99472b44321033a7702e7738252f"; }; } { @@ -7082,6 +5610,14 @@ sha1 = "a4da6b635ffcccca33f70d17cb92592de95e557a"; }; } + { + name = "sirv___sirv_1.0.18.tgz"; + path = fetchurl { + name = "sirv___sirv_1.0.18.tgz"; + url = "https://registry.yarnpkg.com/sirv/-/sirv-1.0.18.tgz"; + sha1 = "105fab52fb656ce8a2bebbf36b11052005952899"; + }; + } { name = "slash___slash_3.0.0.tgz"; path = fetchurl { @@ -7098,38 +5634,6 @@ sha1 = "500e8dd0fd55b05815086255b3195adf2a45fe6b"; }; } - { - name = "snapdragon_node___snapdragon_node_2.1.1.tgz"; - path = fetchurl { - name = "snapdragon_node___snapdragon_node_2.1.1.tgz"; - url = "https://registry.yarnpkg.com/snapdragon-node/-/snapdragon-node-2.1.1.tgz"; - sha1 = "6c175f86ff14bdb0724563e8f3c1b021a286853b"; - }; - } - { - name = "snapdragon_util___snapdragon_util_3.0.1.tgz"; - path = fetchurl { - name = "snapdragon_util___snapdragon_util_3.0.1.tgz"; - url = "https://registry.yarnpkg.com/snapdragon-util/-/snapdragon-util-3.0.1.tgz"; - sha1 = "f956479486f2acd79700693f6f7b805e45ab56e2"; - }; - } - { - name = "snapdragon___snapdragon_0.8.2.tgz"; - path = fetchurl { - name = "snapdragon___snapdragon_0.8.2.tgz"; - url = "https://registry.yarnpkg.com/snapdragon/-/snapdragon-0.8.2.tgz"; - sha1 = "64922e7c565b0e14204ba1aa7d6964278d25182d"; - }; - } - { - name = "sort_keys___sort_keys_1.1.2.tgz"; - path = fetchurl { - name = "sort_keys___sort_keys_1.1.2.tgz"; - url = "https://registry.yarnpkg.com/sort-keys/-/sort-keys-1.1.2.tgz"; - sha1 = "441b6d4d346798f1b4e49e8920adfba0e543f9ad"; - }; - } { name = "source_list_map___source_list_map_2.0.1.tgz"; path = fetchurl { @@ -7147,27 +5651,11 @@ }; } { - name = "source_map_resolve___source_map_resolve_0.5.3.tgz"; + name = "source_map_support___source_map_support_0.5.20.tgz"; path = fetchurl { - name = "source_map_resolve___source_map_resolve_0.5.3.tgz"; - url = "https://registry.yarnpkg.com/source-map-resolve/-/source-map-resolve-0.5.3.tgz"; - sha1 = "190866bece7553e1f8f267a2ee82c606b5509a1a"; - }; - } - { - name = "source_map_support___source_map_support_0.5.19.tgz"; - path = fetchurl { - name = "source_map_support___source_map_support_0.5.19.tgz"; - url = "https://registry.yarnpkg.com/source-map-support/-/source-map-support-0.5.19.tgz"; - sha1 = "a98b62f86dcaf4f67399648c085291ab9e8fed61"; - }; - } - { - name = "source_map_url___source_map_url_0.4.1.tgz"; - path = fetchurl { - name = "source_map_url___source_map_url_0.4.1.tgz"; - url = "https://registry.yarnpkg.com/source-map-url/-/source-map-url-0.4.1.tgz"; - sha1 = "0af66605a745a5a2f91cf1bbf8a7afbc283dec56"; + name = "source_map_support___source_map_support_0.5.20.tgz"; + url = "https://registry.yarnpkg.com/source-map-support/-/source-map-support-0.5.20.tgz"; + sha1 = "12166089f8f5e5e8c56926b377633392dd2cb6c9"; }; } { @@ -7219,11 +5707,11 @@ }; } { - name = "spdx_license_ids___spdx_license_ids_3.0.9.tgz"; + name = "spdx_license_ids___spdx_license_ids_3.0.10.tgz"; path = fetchurl { - name = "spdx_license_ids___spdx_license_ids_3.0.9.tgz"; - url = "https://registry.yarnpkg.com/spdx-license-ids/-/spdx-license-ids-3.0.9.tgz"; - sha1 = "8a595135def9592bda69709474f1cbeea7c2467f"; + name = "spdx_license_ids___spdx_license_ids_3.0.10.tgz"; + url = "https://registry.yarnpkg.com/spdx-license-ids/-/spdx-license-ids-3.0.10.tgz"; + sha1 = "0d9becccde7003d6c658d487dd48a32f0bf3014b"; }; } { @@ -7234,14 +5722,6 @@ sha1 = "aab5e645012db08ba182e151165738d00887b019"; }; } - { - name = "split_string___split_string_3.1.0.tgz"; - path = fetchurl { - name = "split_string___split_string_3.1.0.tgz"; - url = "https://registry.yarnpkg.com/split-string/-/split-string-3.1.0.tgz"; - sha1 = "7cb09dda3a86585705c64b39a6466038682e8fe2"; - }; - } { name = "sprintf_js___sprintf_js_1.0.3.tgz"; path = fetchurl { @@ -7250,22 +5730,6 @@ sha1 = "04e6926f662895354f3dd015203633b857297e2c"; }; } - { - name = "ssri___ssri_6.0.2.tgz"; - path = fetchurl { - name = "ssri___ssri_6.0.2.tgz"; - url = "https://registry.yarnpkg.com/ssri/-/ssri-6.0.2.tgz"; - sha1 = "157939134f20464e7301ddba3e90ffa8f7728ac5"; - }; - } - { - name = "ssri___ssri_8.0.1.tgz"; - path = fetchurl { - name = "ssri___ssri_8.0.1.tgz"; - url = "https://registry.yarnpkg.com/ssri/-/ssri-8.0.1.tgz"; - sha1 = "638e4e439e2ffbd2cd289776d5ca457c4f51a2af"; - }; - } { name = "stable___stable_0.1.8.tgz"; path = fetchurl { @@ -7282,14 +5746,6 @@ sha1 = "a16dbe54522d7fa5ef1389129d813fd47b148014"; }; } - { - name = "static_extend___static_extend_0.1.2.tgz"; - path = fetchurl { - name = "static_extend___static_extend_0.1.2.tgz"; - url = "https://registry.yarnpkg.com/static-extend/-/static-extend-0.1.2.tgz"; - sha1 = "60809c39cbff55337226fd5e0b520f341f1fb5c6"; - }; - } { name = "static_module___static_module_2.2.5.tgz"; path = fetchurl { @@ -7299,67 +5755,19 @@ }; } { - name = "stream_browserify___stream_browserify_2.0.2.tgz"; + name = "string_width___string_width_4.2.3.tgz"; path = fetchurl { - name = "stream_browserify___stream_browserify_2.0.2.tgz"; - url = "https://registry.yarnpkg.com/stream-browserify/-/stream-browserify-2.0.2.tgz"; - sha1 = "87521d38a44aa7ee91ce1cd2a47df0cb49dd660b"; + name = "string_width___string_width_4.2.3.tgz"; + url = "https://registry.yarnpkg.com/string-width/-/string-width-4.2.3.tgz"; + sha1 = "269c7117d27b05ad2e536830a8ec895ef9c6d010"; }; } { - name = "stream_each___stream_each_1.2.3.tgz"; + name = "string.prototype.matchall___string.prototype.matchall_4.0.6.tgz"; path = fetchurl { - name = "stream_each___stream_each_1.2.3.tgz"; - url = "https://registry.yarnpkg.com/stream-each/-/stream-each-1.2.3.tgz"; - sha1 = "ebe27a0c389b04fbcc233642952e10731afa9bae"; - }; - } - { - name = "stream_http___stream_http_2.8.3.tgz"; - path = fetchurl { - name = "stream_http___stream_http_2.8.3.tgz"; - url = "https://registry.yarnpkg.com/stream-http/-/stream-http-2.8.3.tgz"; - sha1 = "b2d242469288a5a27ec4fe8933acf623de6514fc"; - }; - } - { - name = "stream_shift___stream_shift_1.0.1.tgz"; - path = fetchurl { - name = "stream_shift___stream_shift_1.0.1.tgz"; - url = "https://registry.yarnpkg.com/stream-shift/-/stream-shift-1.0.1.tgz"; - sha1 = "d7088281559ab2778424279b0877da3c392d5a3d"; - }; - } - { - name = "strict_uri_encode___strict_uri_encode_1.1.0.tgz"; - path = fetchurl { - name = "strict_uri_encode___strict_uri_encode_1.1.0.tgz"; - url = "https://registry.yarnpkg.com/strict-uri-encode/-/strict-uri-encode-1.1.0.tgz"; - sha1 = "279b225df1d582b1f54e65addd4352e18faa0713"; - }; - } - { - name = "string_width___string_width_3.1.0.tgz"; - path = fetchurl { - name = "string_width___string_width_3.1.0.tgz"; - url = "https://registry.yarnpkg.com/string-width/-/string-width-3.1.0.tgz"; - sha1 = "22767be21b62af1081574306f69ac51b62203961"; - }; - } - { - name = "string_width___string_width_4.2.2.tgz"; - path = fetchurl { - name = "string_width___string_width_4.2.2.tgz"; - url = "https://registry.yarnpkg.com/string-width/-/string-width-4.2.2.tgz"; - sha1 = "dafd4f9559a7585cfba529c6a0a4f73488ebd4c5"; - }; - } - { - name = "string.prototype.matchall___string.prototype.matchall_4.0.5.tgz"; - path = fetchurl { - name = "string.prototype.matchall___string.prototype.matchall_4.0.5.tgz"; - url = "https://registry.yarnpkg.com/string.prototype.matchall/-/string.prototype.matchall-4.0.5.tgz"; - sha1 = "59370644e1db7e4c0c045277690cf7b01203c4da"; + name = "string.prototype.matchall___string.prototype.matchall_4.0.6.tgz"; + url = "https://registry.yarnpkg.com/string.prototype.matchall/-/string.prototype.matchall-4.0.6.tgz"; + sha1 = "5abb5dabc94c7b0ea2380f65ba610b3a544b15fa"; }; } { @@ -7395,19 +5803,11 @@ }; } { - name = "strip_ansi___strip_ansi_5.2.0.tgz"; + name = "strip_ansi___strip_ansi_6.0.1.tgz"; path = fetchurl { - name = "strip_ansi___strip_ansi_5.2.0.tgz"; - url = "https://registry.yarnpkg.com/strip-ansi/-/strip-ansi-5.2.0.tgz"; - sha1 = "8c9a536feb6afc962bdfa5b104a5091c1ad9c0ae"; - }; - } - { - name = "strip_ansi___strip_ansi_6.0.0.tgz"; - path = fetchurl { - name = "strip_ansi___strip_ansi_6.0.0.tgz"; - url = "https://registry.yarnpkg.com/strip-ansi/-/strip-ansi-6.0.0.tgz"; - sha1 = "0b1571dd7669ccd4f3e06e14ef1eed26225ae532"; + name = "strip_ansi___strip_ansi_6.0.1.tgz"; + url = "https://registry.yarnpkg.com/strip-ansi/-/strip-ansi-6.0.1.tgz"; + sha1 = "9e26c63d30f53443e9489495b2105d37b67a85d9"; }; } { @@ -7418,6 +5818,14 @@ sha1 = "2334c18e9c759f7bdd56fdef7e9ae3d588e68ed3"; }; } + { + name = "strip_final_newline___strip_final_newline_2.0.0.tgz"; + path = fetchurl { + name = "strip_final_newline___strip_final_newline_2.0.0.tgz"; + url = "https://registry.yarnpkg.com/strip-final-newline/-/strip-final-newline-2.0.0.tgz"; + sha1 = "89b852fb2fcbe936f6f4b3187afb0a12c1ab58ad"; + }; + } { name = "strip_indent___strip_indent_3.0.0.tgz"; path = fetchurl { @@ -7443,11 +5851,11 @@ }; } { - name = "stylehacks___stylehacks_4.0.3.tgz"; + name = "stylehacks___stylehacks_5.0.1.tgz"; path = fetchurl { - name = "stylehacks___stylehacks_4.0.3.tgz"; - url = "https://registry.yarnpkg.com/stylehacks/-/stylehacks-4.0.3.tgz"; - sha1 = "6718fcaf4d1e07d8a1318690881e8d96726a71d5"; + name = "stylehacks___stylehacks_5.0.1.tgz"; + url = "https://registry.yarnpkg.com/stylehacks/-/stylehacks-5.0.1.tgz"; + sha1 = "323ec554198520986806388c7fdaebc38d2c06fb"; }; } { @@ -7498,14 +5906,6 @@ sha1 = "e2e69a44ac8772f78a1ec0b35b689df6530efc8f"; }; } - { - name = "supports_color___supports_color_6.1.0.tgz"; - path = fetchurl { - name = "supports_color___supports_color_6.1.0.tgz"; - url = "https://registry.yarnpkg.com/supports-color/-/supports-color-6.1.0.tgz"; - sha1 = "0764abc69c63d5ac842dd4867e8d025e880df8f3"; - }; - } { name = "supports_color___supports_color_7.2.0.tgz"; path = fetchurl { @@ -7514,6 +5914,14 @@ sha1 = "1b7dcdcb32b8138801b3e478ba6a51caa89648da"; }; } + { + name = "supports_color___supports_color_8.1.1.tgz"; + path = fetchurl { + name = "supports_color___supports_color_8.1.1.tgz"; + url = "https://registry.yarnpkg.com/supports-color/-/supports-color-8.1.1.tgz"; + sha1 = "cd6fc17e28500cff56c1b86c0a7fd4a54a73005c"; + }; + } { name = "svg_tags___svg_tags_1.0.0.tgz"; path = fetchurl { @@ -7523,75 +5931,51 @@ }; } { - name = "svgo___svgo_1.3.2.tgz"; + name = "svgo___svgo_2.7.0.tgz"; path = fetchurl { - name = "svgo___svgo_1.3.2.tgz"; - url = "https://registry.yarnpkg.com/svgo/-/svgo-1.3.2.tgz"; - sha1 = "b6dc511c063346c9e415b81e43401145b96d4167"; + name = "svgo___svgo_2.7.0.tgz"; + url = "https://registry.yarnpkg.com/svgo/-/svgo-2.7.0.tgz"; + sha1 = "e164cded22f4408fe4978f082be80159caea1e2d"; }; } { - name = "table___table_6.7.1.tgz"; + name = "table___table_6.7.2.tgz"; path = fetchurl { - name = "table___table_6.7.1.tgz"; - url = "https://registry.yarnpkg.com/table/-/table-6.7.1.tgz"; - sha1 = "ee05592b7143831a8c94f3cee6aae4c1ccef33e2"; + name = "table___table_6.7.2.tgz"; + url = "https://registry.yarnpkg.com/table/-/table-6.7.2.tgz"; + sha1 = "a8d39b9f5966693ca8b0feba270a78722cbaf3b0"; }; } { - name = "tailwindcss___tailwindcss_2.0.1_compat.tgz"; + name = "tailwindcss___tailwindcss_2.2.19.tgz"; path = fetchurl { - name = "tailwindcss___tailwindcss_2.0.1_compat.tgz"; - url = "https://registry.yarnpkg.com/tailwindcss/-/tailwindcss-2.0.1-compat.tgz"; - sha1 = "2f57e9e4e848587bfc67ed92ee0de0882c3d0673"; + name = "tailwindcss___tailwindcss_2.2.19.tgz"; + url = "https://registry.yarnpkg.com/tailwindcss/-/tailwindcss-2.2.19.tgz"; + sha1 = "540e464832cd462bb9649c1484b0a38315c2653c"; }; } { - name = "tapable___tapable_1.1.3.tgz"; + name = "tapable___tapable_2.2.1.tgz"; path = fetchurl { - name = "tapable___tapable_1.1.3.tgz"; - url = "https://registry.yarnpkg.com/tapable/-/tapable-1.1.3.tgz"; - sha1 = "a1fccc06b58db61fd7a45da2da44f5f3a3e67ba2"; + name = "tapable___tapable_2.2.1.tgz"; + url = "https://registry.yarnpkg.com/tapable/-/tapable-2.2.1.tgz"; + sha1 = "1967a73ef4060a82f12ab96af86d52fdb76eeca0"; }; } { - name = "tar___tar_6.1.0.tgz"; + name = "terser_webpack_plugin___terser_webpack_plugin_5.2.4.tgz"; path = fetchurl { - name = "tar___tar_6.1.0.tgz"; - url = "https://registry.yarnpkg.com/tar/-/tar-6.1.0.tgz"; - sha1 = "d1724e9bcc04b977b18d5c573b333a2207229a83"; + name = "terser_webpack_plugin___terser_webpack_plugin_5.2.4.tgz"; + url = "https://registry.yarnpkg.com/terser-webpack-plugin/-/terser-webpack-plugin-5.2.4.tgz"; + sha1 = "ad1be7639b1cbe3ea49fab995cbe7224b31747a1"; }; } { - name = "terser_webpack_plugin___terser_webpack_plugin_1.4.5.tgz"; + name = "terser___terser_5.9.0.tgz"; path = fetchurl { - name = "terser_webpack_plugin___terser_webpack_plugin_1.4.5.tgz"; - url = "https://registry.yarnpkg.com/terser-webpack-plugin/-/terser-webpack-plugin-1.4.5.tgz"; - sha1 = "a217aefaea330e734ffacb6120ec1fa312d6040b"; - }; - } - { - name = "terser_webpack_plugin___terser_webpack_plugin_4.2.3.tgz"; - path = fetchurl { - name = "terser_webpack_plugin___terser_webpack_plugin_4.2.3.tgz"; - url = "https://registry.yarnpkg.com/terser-webpack-plugin/-/terser-webpack-plugin-4.2.3.tgz"; - sha1 = "28daef4a83bd17c1db0297070adc07fc8cfc6a9a"; - }; - } - { - name = "terser___terser_4.8.0.tgz"; - path = fetchurl { - name = "terser___terser_4.8.0.tgz"; - url = "https://registry.yarnpkg.com/terser/-/terser-4.8.0.tgz"; - sha1 = "63056343d7c70bb29f3af665865a46fe03a0df17"; - }; - } - { - name = "terser___terser_5.7.0.tgz"; - path = fetchurl { - name = "terser___terser_5.7.0.tgz"; - url = "https://registry.yarnpkg.com/terser/-/terser-5.7.0.tgz"; - sha1 = "a761eeec206bc87b605ab13029876ead938ae693"; + name = "terser___terser_5.9.0.tgz"; + url = "https://registry.yarnpkg.com/terser/-/terser-5.9.0.tgz"; + sha1 = "47d6e629a522963240f2b55fcaa3c99083d2c351"; }; } { @@ -7610,14 +5994,6 @@ sha1 = "01c1e39eb31d07cb7d03a96a70823260b23132cd"; }; } - { - name = "timers_browserify___timers_browserify_2.0.12.tgz"; - path = fetchurl { - name = "timers_browserify___timers_browserify_2.0.12.tgz"; - url = "https://registry.yarnpkg.com/timers-browserify/-/timers-browserify-2.0.12.tgz"; - sha1 = "44a45c11fbf407f34f97bccd1577c652361b00ee"; - }; - } { name = "timsort___timsort_0.3.0.tgz"; path = fetchurl { @@ -7627,11 +6003,11 @@ }; } { - name = "tiny_invariant___tiny_invariant_1.1.0.tgz"; + name = "tiny_invariant___tiny_invariant_1.2.0.tgz"; path = fetchurl { - name = "tiny_invariant___tiny_invariant_1.1.0.tgz"; - url = "https://registry.yarnpkg.com/tiny-invariant/-/tiny-invariant-1.1.0.tgz"; - sha1 = "634c5f8efdc27714b7f386c35e6760991d230875"; + name = "tiny_invariant___tiny_invariant_1.2.0.tgz"; + url = "https://registry.yarnpkg.com/tiny-invariant/-/tiny-invariant-1.2.0.tgz"; + sha1 = "a1141f86b672a9148c72e978a19a73b9b94a15a9"; }; } { @@ -7643,11 +6019,11 @@ }; } { - name = "to_arraybuffer___to_arraybuffer_1.0.1.tgz"; + name = "tmp___tmp_0.2.1.tgz"; path = fetchurl { - name = "to_arraybuffer___to_arraybuffer_1.0.1.tgz"; - url = "https://registry.yarnpkg.com/to-arraybuffer/-/to-arraybuffer-1.0.1.tgz"; - sha1 = "7d229b1fcc637e466ca081180836a7aabff83f43"; + name = "tmp___tmp_0.2.1.tgz"; + url = "https://registry.yarnpkg.com/tmp/-/tmp-0.2.1.tgz"; + sha1 = "8457fc3037dcf4719c251367a1af6500ee1ccf14"; }; } { @@ -7658,22 +6034,6 @@ sha1 = "dc5e698cbd079265bc73e0377681a4e4e83f616e"; }; } - { - name = "to_object_path___to_object_path_0.3.0.tgz"; - path = fetchurl { - name = "to_object_path___to_object_path_0.3.0.tgz"; - url = "https://registry.yarnpkg.com/to-object-path/-/to-object-path-0.3.0.tgz"; - sha1 = "297588b7b0e7e0ac08e04e672f85c1f4999e17af"; - }; - } - { - name = "to_regex_range___to_regex_range_2.1.1.tgz"; - path = fetchurl { - name = "to_regex_range___to_regex_range_2.1.1.tgz"; - url = "https://registry.yarnpkg.com/to-regex-range/-/to-regex-range-2.1.1.tgz"; - sha1 = "7c80c17b9dfebe599e27367e0d4dd5590141db38"; - }; - } { name = "to_regex_range___to_regex_range_5.0.1.tgz"; path = fetchurl { @@ -7682,14 +6042,6 @@ sha1 = "1648c44aae7c8d988a326018ed72f5b4dd0392e4"; }; } - { - name = "to_regex___to_regex_3.0.2.tgz"; - path = fetchurl { - name = "to_regex___to_regex_3.0.2.tgz"; - url = "https://registry.yarnpkg.com/to-regex/-/to-regex-3.0.2.tgz"; - sha1 = "13cfdd9b336552f30b51f33a8ae1b42a7a7599ce"; - }; - } { name = "topojson___topojson_1.6.27.tgz"; path = fetchurl { @@ -7698,6 +6050,14 @@ sha1 = "adbe33a67e2f1673d338df12644ad20fc20b42ed"; }; } + { + name = "totalist___totalist_1.1.0.tgz"; + path = fetchurl { + name = "totalist___totalist_1.1.0.tgz"; + url = "https://registry.yarnpkg.com/totalist/-/totalist-1.1.0.tgz"; + sha1 = "a4d65a3e546517701e3e5c37a47a70ac97fe56df"; + }; + } { name = "trim_newlines___trim_newlines_3.0.1.tgz"; path = fetchurl { @@ -7715,19 +6075,19 @@ }; } { - name = "tsconfig_paths___tsconfig_paths_3.9.0.tgz"; + name = "tsconfig_paths___tsconfig_paths_3.11.0.tgz"; path = fetchurl { - name = "tsconfig_paths___tsconfig_paths_3.9.0.tgz"; - url = "https://registry.yarnpkg.com/tsconfig-paths/-/tsconfig-paths-3.9.0.tgz"; - sha1 = "098547a6c4448807e8fcb8eae081064ee9a3c90b"; + name = "tsconfig_paths___tsconfig_paths_3.11.0.tgz"; + url = "https://registry.yarnpkg.com/tsconfig-paths/-/tsconfig-paths-3.11.0.tgz"; + sha1 = "954c1fe973da6339c78e06b03ce2e48810b65f36"; }; } { - name = "tty_browserify___tty_browserify_0.0.0.tgz"; + name = "tslib___tslib_2.3.1.tgz"; path = fetchurl { - name = "tty_browserify___tty_browserify_0.0.0.tgz"; - url = "https://registry.yarnpkg.com/tty-browserify/-/tty-browserify-0.0.0.tgz"; - sha1 = "a157ba402da24e9bf957f9aa69d524eed42901a6"; + name = "tslib___tslib_2.3.1.tgz"; + url = "https://registry.yarnpkg.com/tslib/-/tslib-2.3.1.tgz"; + sha1 = "e8a335add5ceae51aa261d32a490158ef042ef01"; }; } { @@ -7803,59 +6163,43 @@ }; } { - name = "unicode_canonical_property_names_ecmascript___unicode_canonical_property_names_ecmascript_1.0.4.tgz"; + name = "unicode_canonical_property_names_ecmascript___unicode_canonical_property_names_ecmascript_2.0.0.tgz"; path = fetchurl { - name = "unicode_canonical_property_names_ecmascript___unicode_canonical_property_names_ecmascript_1.0.4.tgz"; - url = "https://registry.yarnpkg.com/unicode-canonical-property-names-ecmascript/-/unicode-canonical-property-names-ecmascript-1.0.4.tgz"; - sha1 = "2619800c4c825800efdd8343af7dd9933cbe2818"; + name = "unicode_canonical_property_names_ecmascript___unicode_canonical_property_names_ecmascript_2.0.0.tgz"; + url = "https://registry.yarnpkg.com/unicode-canonical-property-names-ecmascript/-/unicode-canonical-property-names-ecmascript-2.0.0.tgz"; + sha1 = "301acdc525631670d39f6146e0e77ff6bbdebddc"; }; } { - name = "unicode_match_property_ecmascript___unicode_match_property_ecmascript_1.0.4.tgz"; + name = "unicode_match_property_ecmascript___unicode_match_property_ecmascript_2.0.0.tgz"; path = fetchurl { - name = "unicode_match_property_ecmascript___unicode_match_property_ecmascript_1.0.4.tgz"; - url = "https://registry.yarnpkg.com/unicode-match-property-ecmascript/-/unicode-match-property-ecmascript-1.0.4.tgz"; - sha1 = "8ed2a32569961bce9227d09cd3ffbb8fed5f020c"; + name = "unicode_match_property_ecmascript___unicode_match_property_ecmascript_2.0.0.tgz"; + url = "https://registry.yarnpkg.com/unicode-match-property-ecmascript/-/unicode-match-property-ecmascript-2.0.0.tgz"; + sha1 = "54fd16e0ecb167cf04cf1f756bdcc92eba7976c3"; }; } { - name = "unicode_match_property_value_ecmascript___unicode_match_property_value_ecmascript_1.2.0.tgz"; + name = "unicode_match_property_value_ecmascript___unicode_match_property_value_ecmascript_2.0.0.tgz"; path = fetchurl { - name = "unicode_match_property_value_ecmascript___unicode_match_property_value_ecmascript_1.2.0.tgz"; - url = "https://registry.yarnpkg.com/unicode-match-property-value-ecmascript/-/unicode-match-property-value-ecmascript-1.2.0.tgz"; - sha1 = "0d91f600eeeb3096aa962b1d6fc88876e64ea531"; + name = "unicode_match_property_value_ecmascript___unicode_match_property_value_ecmascript_2.0.0.tgz"; + url = "https://registry.yarnpkg.com/unicode-match-property-value-ecmascript/-/unicode-match-property-value-ecmascript-2.0.0.tgz"; + sha1 = "1a01aa57247c14c568b89775a54938788189a714"; }; } { - name = "unicode_property_aliases_ecmascript___unicode_property_aliases_ecmascript_1.1.0.tgz"; + name = "unicode_property_aliases_ecmascript___unicode_property_aliases_ecmascript_2.0.0.tgz"; path = fetchurl { - name = "unicode_property_aliases_ecmascript___unicode_property_aliases_ecmascript_1.1.0.tgz"; - url = "https://registry.yarnpkg.com/unicode-property-aliases-ecmascript/-/unicode-property-aliases-ecmascript-1.1.0.tgz"; - sha1 = "dd57a99f6207bedff4628abefb94c50db941c8f4"; + name = "unicode_property_aliases_ecmascript___unicode_property_aliases_ecmascript_2.0.0.tgz"; + url = "https://registry.yarnpkg.com/unicode-property-aliases-ecmascript/-/unicode-property-aliases-ecmascript-2.0.0.tgz"; + sha1 = "0a36cb9a585c4f6abd51ad1deddb285c165297c8"; }; } { - name = "unified___unified_9.2.1.tgz"; + name = "unified___unified_9.2.2.tgz"; path = fetchurl { - name = "unified___unified_9.2.1.tgz"; - url = "https://registry.yarnpkg.com/unified/-/unified-9.2.1.tgz"; - sha1 = "ae18d5674c114021bfdbdf73865ca60f410215a3"; - }; - } - { - name = "union_value___union_value_1.0.1.tgz"; - path = fetchurl { - name = "union_value___union_value_1.0.1.tgz"; - url = "https://registry.yarnpkg.com/union-value/-/union-value-1.0.1.tgz"; - sha1 = "0b6fe7b835aecda61c6ea4d4f02c14221e109847"; - }; - } - { - name = "uniq___uniq_1.0.1.tgz"; - path = fetchurl { - name = "uniq___uniq_1.0.1.tgz"; - url = "https://registry.yarnpkg.com/uniq/-/uniq-1.0.1.tgz"; - sha1 = "b31c5ae8254844a3a8281541ce2b04b865a734ff"; + name = "unified___unified_9.2.2.tgz"; + url = "https://registry.yarnpkg.com/unified/-/unified-9.2.2.tgz"; + sha1 = "67649a1abfc3ab85d2969502902775eb03146975"; }; } { @@ -7866,22 +6210,6 @@ sha1 = "ffede4b36b25290696e6e165d4a59edb998e6b02"; }; } - { - name = "unique_filename___unique_filename_1.1.1.tgz"; - path = fetchurl { - name = "unique_filename___unique_filename_1.1.1.tgz"; - url = "https://registry.yarnpkg.com/unique-filename/-/unique-filename-1.1.1.tgz"; - sha1 = "1d69769369ada0583103a1e6ae87681b56573230"; - }; - } - { - name = "unique_slug___unique_slug_2.0.2.tgz"; - path = fetchurl { - name = "unique_slug___unique_slug_2.0.2.tgz"; - url = "https://registry.yarnpkg.com/unique-slug/-/unique-slug-2.0.2.tgz"; - sha1 = "baabce91083fc64e945b0f3ad613e264f7cd4e6c"; - }; - } { name = "unist_util_find_all_after___unist_util_find_all_after_3.0.2.tgz"; path = fetchurl { @@ -7914,30 +6242,6 @@ sha1 = "75a4984efedc4b08975c5aeb73f530d02df25717"; }; } - { - name = "unquote___unquote_1.1.1.tgz"; - path = fetchurl { - name = "unquote___unquote_1.1.1.tgz"; - url = "https://registry.yarnpkg.com/unquote/-/unquote-1.1.1.tgz"; - sha1 = "8fded7324ec6e88a0ff8b905e7c098cdc086d544"; - }; - } - { - name = "unset_value___unset_value_1.0.0.tgz"; - path = fetchurl { - name = "unset_value___unset_value_1.0.0.tgz"; - url = "https://registry.yarnpkg.com/unset-value/-/unset-value-1.0.0.tgz"; - sha1 = "8376873f7d2335179ffb1e6fc3a8ed0dfc8ab559"; - }; - } - { - name = "upath___upath_1.2.0.tgz"; - path = fetchurl { - name = "upath___upath_1.2.0.tgz"; - url = "https://registry.yarnpkg.com/upath/-/upath-1.2.0.tgz"; - sha1 = "8f66dbcd55a883acdae4408af8b035a5044c1894"; - }; - } { name = "uri_js___uri_js_4.4.1.tgz"; path = fetchurl { @@ -7946,14 +6250,6 @@ sha1 = "9b1a52595225859e55f669d928f88c6c57f2a77e"; }; } - { - name = "urix___urix_0.1.0.tgz"; - path = fetchurl { - name = "urix___urix_0.1.0.tgz"; - url = "https://registry.yarnpkg.com/urix/-/urix-0.1.0.tgz"; - sha1 = "da937f7a62e21fec1fd18d49b35c2935067a6c72"; - }; - } { name = "url_search_params_polyfill___url_search_params_polyfill_8.1.1.tgz"; path = fetchurl { @@ -7962,22 +6258,6 @@ sha1 = "9e69e4dba300a71ae7ad3cead62c7717fd99329f"; }; } - { - name = "url___url_0.11.0.tgz"; - path = fetchurl { - name = "url___url_0.11.0.tgz"; - url = "https://registry.yarnpkg.com/url/-/url-0.11.0.tgz"; - sha1 = "3838e97cfc60521eb73c525a8e55bfdd9e2e28f1"; - }; - } - { - name = "use___use_3.1.1.tgz"; - path = fetchurl { - name = "use___use_3.1.1.tgz"; - url = "https://registry.yarnpkg.com/use/-/use-3.1.1.tgz"; - sha1 = "d50c8cac79a19fbc20f2911f56eb973f4e10070f"; - }; - } { name = "util_deprecate___util_deprecate_1.0.2.tgz"; path = fetchurl { @@ -7986,30 +6266,6 @@ sha1 = "450d4dc9fa70de732762fbd2d4a28981419a0ccf"; }; } - { - name = "util.promisify___util.promisify_1.0.1.tgz"; - path = fetchurl { - name = "util.promisify___util.promisify_1.0.1.tgz"; - url = "https://registry.yarnpkg.com/util.promisify/-/util.promisify-1.0.1.tgz"; - sha1 = "6baf7774b80eeb0f7520d8b81d07982a59abbaee"; - }; - } - { - name = "util___util_0.10.3.tgz"; - path = fetchurl { - name = "util___util_0.10.3.tgz"; - url = "https://registry.yarnpkg.com/util/-/util-0.10.3.tgz"; - sha1 = "7afb1afe50805246489e3db7fe0ed379336ac0f9"; - }; - } - { - name = "util___util_0.11.1.tgz"; - path = fetchurl { - name = "util___util_0.11.1.tgz"; - url = "https://registry.yarnpkg.com/util/-/util-0.11.1.tgz"; - sha1 = "3236733720ec64bb27f6e26f421aaa2e1b588d61"; - }; - } { name = "v8_compile_cache___v8_compile_cache_2.3.0.tgz"; path = fetchurl { @@ -8067,35 +6323,35 @@ }; } { - name = "vm_browserify___vm_browserify_1.1.2.tgz"; + name = "watchpack___watchpack_2.2.0.tgz"; path = fetchurl { - name = "vm_browserify___vm_browserify_1.1.2.tgz"; - url = "https://registry.yarnpkg.com/vm-browserify/-/vm-browserify-1.1.2.tgz"; - sha1 = "78641c488b8e6ca91a75f511e7a3b32a86e5dda0"; + name = "watchpack___watchpack_2.2.0.tgz"; + url = "https://registry.yarnpkg.com/watchpack/-/watchpack-2.2.0.tgz"; + sha1 = "47d78f5415fe550ecd740f99fe2882323a58b1ce"; }; } { - name = "watchpack_chokidar2___watchpack_chokidar2_2.0.1.tgz"; + name = "webpack_bundle_analyzer___webpack_bundle_analyzer_4.5.0.tgz"; path = fetchurl { - name = "watchpack_chokidar2___watchpack_chokidar2_2.0.1.tgz"; - url = "https://registry.yarnpkg.com/watchpack-chokidar2/-/watchpack-chokidar2-2.0.1.tgz"; - sha1 = "38500072ee6ece66f3769936950ea1771be1c957"; + name = "webpack_bundle_analyzer___webpack_bundle_analyzer_4.5.0.tgz"; + url = "https://registry.yarnpkg.com/webpack-bundle-analyzer/-/webpack-bundle-analyzer-4.5.0.tgz"; + sha1 = "1b0eea2947e73528754a6f9af3e91b2b6e0f79d5"; }; } { - name = "watchpack___watchpack_1.7.5.tgz"; + name = "webpack_cli___webpack_cli_4.9.1.tgz"; path = fetchurl { - name = "watchpack___watchpack_1.7.5.tgz"; - url = "https://registry.yarnpkg.com/watchpack/-/watchpack-1.7.5.tgz"; - sha1 = "1267e6c55e0b9b5be44c2023aed5437a2c26c453"; + name = "webpack_cli___webpack_cli_4.9.1.tgz"; + url = "https://registry.yarnpkg.com/webpack-cli/-/webpack-cli-4.9.1.tgz"; + sha1 = "b64be825e2d1b130f285c314caa3b1ba9a4632b3"; }; } { - name = "webpack_cli___webpack_cli_3.3.12.tgz"; + name = "webpack_merge___webpack_merge_5.8.0.tgz"; path = fetchurl { - name = "webpack_cli___webpack_cli_3.3.12.tgz"; - url = "https://registry.yarnpkg.com/webpack-cli/-/webpack-cli-3.3.12.tgz"; - sha1 = "94e9ada081453cd0aa609c99e500012fd3ad2d4a"; + name = "webpack_merge___webpack_merge_5.8.0.tgz"; + url = "https://registry.yarnpkg.com/webpack-merge/-/webpack-merge-5.8.0.tgz"; + sha1 = "2b39dbf22af87776ad744c390223731d30a68f61"; }; } { @@ -8107,11 +6363,19 @@ }; } { - name = "webpack___webpack_4.39.2.tgz"; + name = "webpack_sources___webpack_sources_2.3.1.tgz"; path = fetchurl { - name = "webpack___webpack_4.39.2.tgz"; - url = "https://registry.yarnpkg.com/webpack/-/webpack-4.39.2.tgz"; - sha1 = "c9aa5c1776d7c309d1b3911764f0288c8c2816aa"; + name = "webpack_sources___webpack_sources_2.3.1.tgz"; + url = "https://registry.yarnpkg.com/webpack-sources/-/webpack-sources-2.3.1.tgz"; + sha1 = "570de0af163949fe272233c2cefe1b56f74511fd"; + }; + } + { + name = "webpack___webpack_5.38.1.tgz"; + path = fetchurl { + name = "webpack___webpack_5.38.1.tgz"; + url = "https://registry.yarnpkg.com/webpack/-/webpack-5.38.1.tgz"; + sha1 = "5224c7f24c18e729268d3e3bc97240d6e880258e"; }; } { @@ -8122,14 +6386,6 @@ sha1 = "13757bc89b209b049fe5d86430e21cf40a89a8e6"; }; } - { - name = "which_module___which_module_2.0.0.tgz"; - path = fetchurl { - name = "which_module___which_module_2.0.0.tgz"; - url = "https://registry.yarnpkg.com/which-module/-/which-module-2.0.0.tgz"; - sha1 = "d9ef07dce77b9902b8a3a8fa4b31c3e3f7e6e87a"; - }; - } { name = "which___which_1.3.1.tgz"; path = fetchurl { @@ -8146,6 +6402,14 @@ sha1 = "7c6a8dd0a636a0327e10b59c9286eee93f3f51b1"; }; } + { + name = "wildcard___wildcard_2.0.0.tgz"; + path = fetchurl { + name = "wildcard___wildcard_2.0.0.tgz"; + url = "https://registry.yarnpkg.com/wildcard/-/wildcard-2.0.0.tgz"; + sha1 = "a77d20e5200c6faaac979e4b3aadc7b3dd7f8fec"; + }; + } { name = "word_wrap___word_wrap_1.2.3.tgz"; path = fetchurl { @@ -8162,22 +6426,6 @@ sha1 = "a3d5da6cd5c0bc0008d37234bbaf1bed63059107"; }; } - { - name = "worker_farm___worker_farm_1.7.0.tgz"; - path = fetchurl { - name = "worker_farm___worker_farm_1.7.0.tgz"; - url = "https://registry.yarnpkg.com/worker-farm/-/worker-farm-1.7.0.tgz"; - sha1 = "26a94c5391bbca926152002f69b84a4bf772e5a8"; - }; - } - { - name = "wrap_ansi___wrap_ansi_5.1.0.tgz"; - path = fetchurl { - name = "wrap_ansi___wrap_ansi_5.1.0.tgz"; - url = "https://registry.yarnpkg.com/wrap-ansi/-/wrap-ansi-5.1.0.tgz"; - sha1 = "1fd1f67235d5b6d0fee781056001bfb694c03b09"; - }; - } { name = "wrappy___wrappy_1.0.2.tgz"; path = fetchurl { @@ -8194,6 +6442,14 @@ sha1 = "56bd5c5a5c70481cd19c571bd39ab965a5de56e8"; }; } + { + name = "ws___ws_7.5.5.tgz"; + path = fetchurl { + name = "ws___ws_7.5.5.tgz"; + url = "https://registry.yarnpkg.com/ws/-/ws-7.5.5.tgz"; + sha1 = "8b4bc4af518cfabd0473ae4f99144287b33eb881"; + }; + } { name = "xtend___xtend_4.0.2.tgz"; path = fetchurl { @@ -8202,22 +6458,6 @@ sha1 = "bb72779f5fa465186b1f438f674fa347fdb5db54"; }; } - { - name = "y18n___y18n_4.0.3.tgz"; - path = fetchurl { - name = "y18n___y18n_4.0.3.tgz"; - url = "https://registry.yarnpkg.com/y18n/-/y18n-4.0.3.tgz"; - sha1 = "b5f259c82cd6e336921efd7bfd8bf560de9eeedf"; - }; - } - { - name = "yallist___yallist_3.1.1.tgz"; - path = fetchurl { - name = "yallist___yallist_3.1.1.tgz"; - url = "https://registry.yarnpkg.com/yallist/-/yallist-3.1.1.tgz"; - sha1 = "dbb7daf9bfd8bac9ab45ebf602b8cbad0d5d08fd"; - }; - } { name = "yallist___yallist_4.0.0.tgz"; path = fetchurl { @@ -8235,27 +6475,11 @@ }; } { - name = "yargs_parser___yargs_parser_13.1.2.tgz"; + name = "yargs_parser___yargs_parser_20.2.9.tgz"; path = fetchurl { - name = "yargs_parser___yargs_parser_13.1.2.tgz"; - url = "https://registry.yarnpkg.com/yargs-parser/-/yargs-parser-13.1.2.tgz"; - sha1 = "130f09702ebaeef2650d54ce6e3e5706f7a4fb38"; - }; - } - { - name = "yargs_parser___yargs_parser_20.2.7.tgz"; - path = fetchurl { - name = "yargs_parser___yargs_parser_20.2.7.tgz"; - url = "https://registry.yarnpkg.com/yargs-parser/-/yargs-parser-20.2.7.tgz"; - sha1 = "61df85c113edfb5a7a4e36eb8aa60ef423cbc90a"; - }; - } - { - name = "yargs___yargs_13.3.2.tgz"; - path = fetchurl { - name = "yargs___yargs_13.3.2.tgz"; - url = "https://registry.yarnpkg.com/yargs/-/yargs-13.3.2.tgz"; - sha1 = "ad7ffefec1aa59565ac915f82dccb38a9c31a2dd"; + name = "yargs_parser___yargs_parser_20.2.9.tgz"; + url = "https://registry.yarnpkg.com/yargs-parser/-/yargs-parser-20.2.9.tgz"; + sha1 = "2eb7dc3b0289718fc295f362753845c41a0c94ee"; }; } { diff --git a/pkgs/servers/web-apps/wordpress/default.nix b/pkgs/servers/web-apps/wordpress/default.nix index a06fdd4d4e98..32b63a25b0b4 100644 --- a/pkgs/servers/web-apps/wordpress/default.nix +++ b/pkgs/servers/web-apps/wordpress/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "wordpress"; - version = "5.8.1"; + version = "5.8.2"; src = fetchurl { url = "https://wordpress.org/${pname}-${version}.tar.gz"; - sha256 = "sha256-kMqQxK+jfa3IpHQ7XLERsgzaX5g84HPCwL69zmT6gio="; + sha256 = "sha256-o9KeTmZXTHtqa/Z2KOo1n6gVCFuna42dFrvf9OBC8v8="; }; installPhase = '' diff --git a/pkgs/servers/x11/xorg/xwayland.nix b/pkgs/servers/x11/xorg/xwayland.nix index 84df46605fa5..7db47f4bf764 100644 --- a/pkgs/servers/x11/xorg/xwayland.nix +++ b/pkgs/servers/x11/xorg/xwayland.nix @@ -43,10 +43,10 @@ stdenv.mkDerivation rec { pname = "xwayland"; - version = "21.1.2"; + version = "21.1.3"; src = fetchurl { url = "mirror://xorg/individual/xserver/${pname}-${version}.tar.xz"; - sha256 = "sha256-uBy91a1guLetjD7MfsKijJvwIUSGcHNc67UB8Ivr0Ys="; + sha256 = "sha256-68J1fzn9TH2xZU/YZZFYnCEaogFy1DpU93rlZ87b+KI="; }; depsBuildBuild = [ diff --git a/pkgs/servers/zigbee2mqtt/default.nix b/pkgs/servers/zigbee2mqtt/default.nix index 7f561c493e66..3f66afae901a 100644 --- a/pkgs/servers/zigbee2mqtt/default.nix +++ b/pkgs/servers/zigbee2mqtt/default.nix @@ -20,7 +20,7 @@ package.override rec { meta = with pkgs.lib; { description = "Zigbee to MQTT bridge using zigbee-shepherd"; license = licenses.gpl3; - homepage = https://github.com/Koenkk/zigbee2mqtt; + homepage = "https://github.com/Koenkk/zigbee2mqtt"; maintainers = with maintainers; [ sweber ]; platforms = platforms.linux; }; diff --git a/pkgs/servers/zigbee2mqtt/node-packages.nix b/pkgs/servers/zigbee2mqtt/node-packages.nix index a9da40e3fe42..6b1e86d30a95 100644 --- a/pkgs/servers/zigbee2mqtt/node-packages.nix +++ b/pkgs/servers/zigbee2mqtt/node-packages.nix @@ -10076,7 +10076,7 @@ let buildInputs = globalBuildInputs; meta = { description = "Zigbee to MQTT bridge using Zigbee-herdsman"; - homepage = https://koenkk.github.io/zigbee2mqtt; + homepage = "https://koenkk.github.io/zigbee2mqtt"; license = "GPL-3.0"; }; production = true; diff --git a/pkgs/shells/fish/plugins/foreign-env/default.nix b/pkgs/shells/fish/plugins/foreign-env/default.nix index 03435340d179..d0b5b77a03b1 100644 --- a/pkgs/shells/fish/plugins/foreign-env/default.nix +++ b/pkgs/shells/fish/plugins/foreign-env/default.nix @@ -2,7 +2,7 @@ buildFishPlugin { pname = "foreign-env"; - version = "git-20200209"; + version = "unstable-2020-02-09"; src = fetchFromGitHub { owner = "oh-my-fish"; diff --git a/pkgs/shells/nushell/default.nix b/pkgs/shells/nushell/default.nix index 14137fa0e607..7a07c4ffdc4d 100644 --- a/pkgs/shells/nushell/default.nix +++ b/pkgs/shells/nushell/default.nix @@ -18,16 +18,16 @@ rustPlatform.buildRustPackage rec { pname = "nushell"; - version = "0.38.0"; + version = "0.39.0"; src = fetchFromGitHub { owner = pname; repo = pname; rev = version; - sha256 = "155rn0balgikkhy77gbva6a88pgwm27flzgjyphiwzwnah1mmhca"; + sha256 = "sha256-eN1tTKNuZMU3qObHaqq70bdkmZeAD6LNAQau9JGSXpE="; }; - cargoSha256 = "1pk56s47mk0f8cww6h1y43jdnf311g35xynz1jvhrk31yyjhb0jl"; + cargoSha256 = "sha256-6TZz8b8fALPTDRxzp+7ZWCHjOwVtqRjdSO6aEwZcMnc="; nativeBuildInputs = [ pkg-config ] ++ lib.optionals (withExtraFeatures && stdenv.isLinux) [ python3 ]; diff --git a/pkgs/shells/oksh/default.nix b/pkgs/shells/oksh/default.nix index 35bd3a62b62f..9ea851adbbf6 100644 --- a/pkgs/shells/oksh/default.nix +++ b/pkgs/shells/oksh/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "oksh"; - version = "6.9"; + version = "7.0"; src = fetchFromGitHub { owner = "ibara"; repo = pname; rev = "${pname}-${version}"; - sha256 = "sha256-b5b6xYqlmjWAT8kTq6YraVLawV/k3ugHZUjXD1LJyhs="; + sha256 = "sha256-076nD0aPps6n5qkR3LQJ6Kn2g3mkov+/M0qSvxNLZ6o="; }; meta = with lib; { diff --git a/pkgs/shells/powershell/default.nix b/pkgs/shells/powershell/default.nix index 4d3038079a80..c34dd472f948 100644 --- a/pkgs/shells/powershell/default.nix +++ b/pkgs/shells/powershell/default.nix @@ -7,9 +7,10 @@ let archString = if stdenv.isAarch64 then "arm64" platformString = if stdenv.isDarwin then "osx" else if stdenv.isLinux then "linux" else throw "unsupported platform"; - platformSha = if stdenv.isDarwin then "0w44ws8b6zfixf7xz93hmplqsx18279n9x8j77y4rbzs13fldvsn" - else if (stdenv.isLinux && stdenv.isx86_64) then "sha256-SOZn7CGLu9x+xhQwjgm0SL7sKDODLwHRpzi7tMdRBAM=" - else if (stdenv.isLinux && stdenv.isAarch64) then "1axbi4kmb1ydys7c45jhp729w1srid3c8jgivb4bdmdp56rf6h32" + platformSha = if (stdenv.isDarwin && stdenv.isx86_64) then "sha256-h5zjn8wtgHmsJFiGq1rja6kZTZj3Q72W2kH3AexRDQs=" + else if (stdenv.isDarwin && stdenv.isAarch64) then "sha256-NHM9ZUpBJb59Oq0Ke7DcvaN+bZ9MjSpXBRu5Ng9OVZ0=" + else if (stdenv.isLinux && stdenv.isx86_64) then "sha256-gRebkDY0WOKabuLd/WNMoRPL7oGQJtHELFNe+sQ0TwA=" + else if (stdenv.isLinux && stdenv.isAarch64) then "sha256-bUacA4DwjDNlIG7yooXxUGL9AysAogNWuQDvcTqo1sE=" else throw "unsupported platform"; platformLdLibraryPath = if stdenv.isDarwin then "DYLD_FALLBACK_LIBRARY_PATH" else if stdenv.isLinux then "LD_LIBRARY_PATH" @@ -19,7 +20,7 @@ let archString = if stdenv.isAarch64 then "arm64" in stdenv.mkDerivation rec { pname = "powershell"; - version = "7.1.4"; + version = "7.2.0"; src = fetchzip { url = "https://github.com/PowerShell/PowerShell/releases/download/v${version}/powershell-${version}-${platformString}-${archString}.tar.gz"; @@ -50,8 +51,6 @@ stdenv.mkDerivation rec { patchelf --replace-needed libcrypto${ext}.1.0.0 libcrypto${ext}.1.1 $pslibs/libmi.so patchelf --replace-needed libssl${ext}.1.0.0 libssl${ext}.1.1 $pslibs/libmi.so '' + lib.optionalString (!stdenv.isDarwin) '' - # Remove liblttng-ust from dependencies once - # https://github.com/PowerShell/PowerShell/pull/14688 is in a release patchelf --replace-needed liblttng-ust${ext}.0 liblttng-ust${ext}.1 $pslibs/libcoreclrtraceptprovider.so '' + '' @@ -74,7 +73,7 @@ stdenv.mkDerivation rec { description = "Powerful cross-platform (Windows, Linux, and macOS) shell and scripting language based on .NET"; homepage = "https://github.com/PowerShell/PowerShell"; maintainers = with maintainers; [ yrashk srgom p3psi ]; - platforms = [ "x86_64-darwin" "x86_64-linux" "aarch64-linux"]; + platforms = [ "x86_64-darwin" "x86_64-linux" "aarch64-linux" "aarch64-darwin" ]; license = with licenses; [ mit ]; }; diff --git a/pkgs/shells/zsh/default.nix b/pkgs/shells/zsh/default.nix index 92eebfd95442..e0fd68f13b60 100644 --- a/pkgs/shells/zsh/default.nix +++ b/pkgs/shells/zsh/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchurl, ncurses, pcre, buildPackages }: +{ lib, stdenv, fetchurl, fetchpatch, ncurses, pcre, buildPackages }: let version = "5.8"; @@ -21,6 +21,13 @@ stdenv.mkDerivation { patches = [ # fix location of timezone data for TZ= completion ./tz_completion.patch + # This commit will be released with the next version of zsh + (fetchpatch { + name = "fix-git-stash-drop-completions.patch"; + url = "https://github.com/zsh-users/zsh/commit/754658aff38e1bdf487c58bec6174cbecd019d11.patch"; + sha256 = "sha256-ud/rLD+SqvyTzT6vwOr+MWH+LY5o5KACrU1TpmL15Lo="; + excludes = [ "ChangeLog" ]; + }) ]; buildInputs = [ ncurses pcre ]; diff --git a/pkgs/shells/zsh/oh-my-zsh/default.nix b/pkgs/shells/zsh/oh-my-zsh/default.nix index 6d484e41dae7..1560cba17f89 100644 --- a/pkgs/shells/zsh/oh-my-zsh/default.nix +++ b/pkgs/shells/zsh/oh-my-zsh/default.nix @@ -5,15 +5,15 @@ , git, nix, nixfmt, jq, coreutils, gnused, curl, cacert }: stdenv.mkDerivation rec { - version = "2021-10-27"; + version = "2021-11-11"; pname = "oh-my-zsh"; - rev = "2e46b2a2dcb96cadd94283bdce95eca75bef1433"; + rev = "b3ba9978cc42a5031c7b68e3cf917ec2e64643bc"; src = fetchFromGitHub { inherit rev; owner = "ohmyzsh"; repo = "ohmyzsh"; - sha256 = "ZZs7SBfRX1JUmjukvnOqMx77vXgoxqHEatGfRvfToK8="; + sha256 = "9a5eVMphQ0jay9ogc/9ZFS+vvHlXhPYCCo8kMdgVsnA="; }; installPhase = '' diff --git a/pkgs/shells/zsh/spaceship-prompt/default.nix b/pkgs/shells/zsh/spaceship-prompt/default.nix index f1dcb9ead9c9..4df472e4afd2 100644 --- a/pkgs/shells/zsh/spaceship-prompt/default.nix +++ b/pkgs/shells/zsh/spaceship-prompt/default.nix @@ -2,13 +2,13 @@ stdenvNoCC.mkDerivation rec { pname = "spaceship-prompt"; - version = "3.14.1"; + version = "3.15.0"; src = fetchFromGitHub { owner = "denysdovhan"; repo = pname; rev = "v${version}"; - sha256 = "sha256-/Q2vsCIDsHUSBavJoHX3L0NQ7REoQmaiRgHVGiLtNPE="; + sha256 = "sha256-/9c4o9tdXtDefZ1fA62Y9Sg2cv54YVZGlZ1n6EfQWC4="; }; dontBuild = true; diff --git a/pkgs/test/default.nix b/pkgs/test/default.nix index ebf732839cea..d1ec7169e170 100644 --- a/pkgs/test/default.nix +++ b/pkgs/test/default.nix @@ -51,8 +51,13 @@ with pkgs; cuda = callPackage ./cuda { }; - trivial = callPackage ../build-support/trivial-builders/test.nix {}; - trivial-overriding = callPackage ../build-support/trivial-builders/test-overriding.nix {}; + trivial-builders = recurseIntoAttrs { + writeStringReferencesToFile = callPackage ../build-support/trivial-builders/test/writeStringReferencesToFile.nix {}; + references = callPackage ../build-support/trivial-builders/test/references.nix {}; + overriding = callPackage ../build-support/trivial-builders/test-overriding.nix {}; + }; writers = callPackage ../build-support/writers/test.nix {}; + + dhall = callPackage ./dhall { }; } diff --git a/pkgs/test/dhall/buildDhallUrl/default.nix b/pkgs/test/dhall/buildDhallUrl/default.nix new file mode 100644 index 000000000000..d2e214fb9770 --- /dev/null +++ b/pkgs/test/dhall/buildDhallUrl/default.nix @@ -0,0 +1,14 @@ +{ dhallPackages, lib }: + +# This file tests that dhallPackages.buildDhallUrl is able to successfully +# build a Nix Dhall package for a given remote Dhall import. +# +# TODO: It would be nice to extend this test to make sure that the resulting +# Nix Dhall package is has the expected contents. + +dhallPackages.buildDhallUrl { + url = "https://raw.githubusercontent.com/cdepillabout/example-dhall-nix/e6a675c72ecd4dd23d254a02aea8181fe875747f/mydhallfile.dhall"; + hash = "sha256-434x+QjHRzuprBdw0h6wmwB1Zj6yZqQb533me8XdO4c="; + dhallHash = "sha256:e37e31f908c7473ba9ac1770d21eb09b0075663eb266a41be77de67bc5dd3b87"; + source = true; +} diff --git a/pkgs/test/dhall/default.nix b/pkgs/test/dhall/default.nix new file mode 100644 index 000000000000..bdb33acf0238 --- /dev/null +++ b/pkgs/test/dhall/default.nix @@ -0,0 +1,5 @@ +{ lib, callPackage }: + +lib.recurseIntoAttrs { + buildDhallUrl = callPackage ./buildDhallUrl { }; +} diff --git a/pkgs/test/haskell/documentationTarball/default.nix b/pkgs/test/haskell/documentationTarball/default.nix index e3214fb49fed..337510281012 100644 --- a/pkgs/test/haskell/documentationTarball/default.nix +++ b/pkgs/test/haskell/documentationTarball/default.nix @@ -2,9 +2,9 @@ let drv = haskellPackages.vector; - docs = pkgs.haskell.lib.documentationTarball drv; + docs = pkgs.haskell.lib.compose.documentationTarball drv; -in pkgs.runCommand "test haskell.lib.documentationTarball" { +in pkgs.runCommand "test haskell.lib.compose.documentationTarball" { meta = { inherit (docs.meta) platforms; }; diff --git a/pkgs/test/haskell/setBuildTarget/default.nix b/pkgs/test/haskell/setBuildTarget/default.nix index 5a8391d08861..f0c78c510449 100644 --- a/pkgs/test/haskell/setBuildTarget/default.nix +++ b/pkgs/test/haskell/setBuildTarget/default.nix @@ -17,7 +17,7 @@ let drv = haskellPackages.callPackage pkgDef {}; test = target: excluded: - let only = pkgs.haskell.lib.setBuildTarget drv target; + let only = pkgs.haskell.lib.compose.setBuildTarget target drv; in '' if [[ ! -f "${only}/bin/${target}" ]]; then echo "${target} was not built" @@ -31,7 +31,7 @@ let ''; in -pkgs.runCommand "test haskell.lib.setBuildTarget" { +pkgs.runCommand "test haskell.lib.compose.setBuildTarget" { meta = { inherit (drv.meta) platforms; }; diff --git a/pkgs/tools/X11/primus/lib.nix b/pkgs/tools/X11/primus/lib.nix index d2f779ddd724..43e0a8233fd0 100644 --- a/pkgs/tools/X11/primus/lib.nix +++ b/pkgs/tools/X11/primus/lib.nix @@ -1,5 +1,10 @@ -{ lib, stdenv, fetchFromGitHub, fetchpatch -, libX11, libGL, mesa +{ lib +, stdenv +, fetchFromGitHub +, fetchpatch +, libX11 +, libGL +, mesa , nvidia_x11 ? null , libglvnd }: @@ -10,8 +15,10 @@ let else if nvidia_x11.useGLVND then libglvnd else nvidia_x11; -in stdenv.mkDerivation { - name = "primus-lib-2015-04-28"; +in +stdenv.mkDerivation { + pname = "primus-lib"; + version = "unstable-2015-04-28"; src = fetchFromGitHub { owner = "amonakov"; @@ -30,11 +37,12 @@ in stdenv.mkDerivation { buildInputs = [ libX11 libGL ]; - makeFlags = [ "LIBDIR=$(out)/lib" - "PRIMUS_libGLa=${aPackage}/lib/libGL.so" - "PRIMUS_libGLd=${libGL}/lib/libGL.so" - "PRIMUS_LOAD_GLOBAL=${mesa}/lib/libglapi.so" - ]; + makeFlags = [ + "LIBDIR=$(out)/lib" + "PRIMUS_libGLa=${aPackage}/lib/libGL.so" + "PRIMUS_libGLd=${libGL}/lib/libGL.so" + "PRIMUS_LOAD_GLOBAL=${mesa}/lib/libglapi.so" + ]; installPhase = '' ln -s $out/lib/libGL.so.1 $out/lib/libGL.so diff --git a/pkgs/tools/X11/run-scaled/default.nix b/pkgs/tools/X11/run-scaled/default.nix index 012eedf07791..d62b38bdf287 100644 --- a/pkgs/tools/X11/run-scaled/default.nix +++ b/pkgs/tools/X11/run-scaled/default.nix @@ -1,13 +1,13 @@ { lib, stdenv, fetchFromGitHub, makeWrapper, bc, xorgserver, xpra, xrandr }: stdenv.mkDerivation { - version = "git-2018-06-03"; + version = "unstable-2018-06-03"; pname = "run-scaled"; src = fetchFromGitHub { - owner = "kaueraal"; - repo = "run_scaled"; - rev = "fa71b3c17e627a96ff707ad69f1def5361f2245c"; + owner = "kaueraal"; + repo = "run_scaled"; + rev = "fa71b3c17e627a96ff707ad69f1def5361f2245c"; sha256 = "1ma4ax7ydq4xvyzrc4zapihmf7v3d9zl9mbi8bgpps7nlgz544ys"; }; diff --git a/pkgs/tools/X11/skippy-xd/default.nix b/pkgs/tools/X11/skippy-xd/default.nix index 0519f2c42044..255d4c34e58d 100644 --- a/pkgs/tools/X11/skippy-xd/default.nix +++ b/pkgs/tools/X11/skippy-xd/default.nix @@ -1,14 +1,33 @@ -{lib, stdenv, fetchgit, xorgproto, libX11, libXft, libXcomposite, libXdamage -, libXext, libXinerama, libjpeg, giflib, pkg-config +{ lib +, stdenv +, fetchgit +, xorgproto +, libX11 +, libXft +, libXcomposite +, libXdamage +, libXext +, libXinerama +, libjpeg +, giflib +, pkg-config }: let buildInputs = [ - xorgproto libX11 libXft libXcomposite libXdamage libXext - libXinerama libjpeg giflib pkg-config + xorgproto + libX11 + libXft + libXcomposite + libXdamage + libXext + libXinerama + libjpeg + giflib + pkg-config ]; in stdenv.mkDerivation rec { - version = "git-2015-03-01"; + version = "unstable-2015-03-01"; pname = "skippy-xd"; inherit buildInputs; src = fetchgit { @@ -16,14 +35,14 @@ stdenv.mkDerivation rec { rev = "397216ca67"; sha256 = "0zcjacilmsv69rv85j6nfr6pxy8z36w1sjz0dbjg6s5m4kga1zl8"; }; - makeFlags = ["PREFIX=$(out)"]; + makeFlags = [ "PREFIX=$(out)" ]; preInstall = '' sed -e "s@/etc/xdg@$out&@" -i Makefile ''; meta = { description = "Expose-style compositing-based standalone window switcher"; - license = lib.licenses.gpl2Plus ; - maintainers = [lib.maintainers.raskin]; + license = lib.licenses.gpl2Plus; + maintainers = [ lib.maintainers.raskin ]; platforms = lib.platforms.linux; }; } diff --git a/pkgs/tools/X11/xdotool/default.nix b/pkgs/tools/X11/xdotool/default.nix index b9eca0d893a5..736c05c7c7db 100644 --- a/pkgs/tools/X11/xdotool/default.nix +++ b/pkgs/tools/X11/xdotool/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "xdotool"; - version = "3.20210903.1"; + version = "3.20211022.1"; src = fetchFromGitHub { owner = "jordansissel"; repo = pname; rev = "v${version}"; - sha256 = "sha256-fmz/CJm1GgNOYjOfC6uNwDa8jV+GczPw8m6Qb2jw3rE="; + sha256 = "sha256-XFiaiHHtUSNFw+xhUR29+2RUHOa+Eyj1HHfjCUjwd9k="; }; nativeBuildInputs = [ pkg-config perl ]; diff --git a/pkgs/tools/X11/xprintidle-ng/default.nix b/pkgs/tools/X11/xprintidle-ng/default.nix index 61e48de7f5e1..fdb3b7c58a56 100644 --- a/pkgs/tools/X11/xprintidle-ng/default.nix +++ b/pkgs/tools/X11/xprintidle-ng/default.nix @@ -1,11 +1,24 @@ -{ lib, stdenv, fetchFromGitHub, libX11, libXScrnSaver, libXext, gnulib - , autoconf, automake, libtool, gettext, pkg-config - , git, perl, texinfo, help2man +{ lib +, stdenv +, fetchFromGitHub +, libX11 +, libXScrnSaver +, libXext +, gnulib +, autoconf +, automake +, libtool +, gettext +, pkg-config +, git +, perl +, texinfo +, help2man }: stdenv.mkDerivation rec { pname = "xprintidle-ng"; - version = "git-2015-09-01"; + version = "unstable-2015-09-01"; src = fetchFromGitHub { owner = "taktoa"; @@ -20,8 +33,16 @@ stdenv.mkDerivation rec { ''; nativeBuildInputs = [ - autoconf automake gettext git gnulib - help2man libtool perl pkg-config texinfo + autoconf + automake + gettext + git + gnulib + help2man + libtool + perl + pkg-config + texinfo ]; configurePhase = '' @@ -30,15 +51,17 @@ stdenv.mkDerivation rec { ''; buildInputs = [ - libX11 libXScrnSaver libXext + libX11 + libXScrnSaver + libXext ]; meta = { - inherit version; + inherit version; description = "A command-line tool to print idle time from libXss"; homepage = "http://taktoa.me/xprintidle-ng/"; license = lib.licenses.gpl2; - maintainers = [lib.maintainers.raskin]; + maintainers = [ lib.maintainers.raskin ]; platforms = lib.platforms.linux; }; } diff --git a/pkgs/tools/admin/ansible/default.nix b/pkgs/tools/admin/ansible/default.nix index 4c66bda06f73..6be403b9e534 100644 --- a/pkgs/tools/admin/ansible/default.nix +++ b/pkgs/tools/admin/ansible/default.nix @@ -1,9 +1,19 @@ -{ python3Packages, fetchurl, fetchFromGitHub }: +{ python3Packages, fetchFromGitHub }: rec { - ansible = ansible_2_11; + ansible = ansible_2_12; - ansible_2_11 = python3Packages.toPythonApplication python3Packages.ansible-core; + ansible_2_12 = python3Packages.toPythonApplication python3Packages.ansible-core; + + ansible_2_11 = python3Packages.toPythonApplication (python3Packages.ansible-core.overridePythonAttrs (old: rec { + pname = "ansible-core"; + version = "2.11.6"; + + src = python3Packages.fetchPypi { + inherit pname version; + sha256 = "sha256-k9UCg8fFtHbev4PcCJs/Z5uTmouae11ijSjar7s9MDo="; + }; + })); ansible_2_10 = python3Packages.toPythonApplication python3Packages.ansible-base; diff --git a/pkgs/tools/admin/awscli2/default.nix b/pkgs/tools/admin/awscli2/default.nix index cf765a53c53f..01f9661bb899 100644 --- a/pkgs/tools/admin/awscli2/default.nix +++ b/pkgs/tools/admin/awscli2/default.nix @@ -1,22 +1,22 @@ -{ lib, python3, groff, less, fetchFromGitHub, fetchpatch }: +{ lib, python3, groff, less, fetchFromGitHub }: let py = python3.override { packageOverrides = self: super: { awscrt = super.awscrt.overridePythonAttrs (oldAttrs: rec { - version = "0.11.24"; + version = "0.12.4"; src = self.fetchPypi { inherit (oldAttrs) pname; inherit version; - sha256 = "sha256-uKpovKQEvwCFvgVw7/W1QtAffo48D5sIWav+XgcBYv8="; + sha256 = "sha256:1cmfkcv2zzirxsb989vx1hvna9nv24pghcvypl0zaxsjphv97mka"; }; }); botocore = super.botocore.overridePythonAttrs (oldAttrs: rec { - version = "2.0.0dev148"; + version = "2.0.0dev155"; src = fetchFromGitHub { owner = "boto"; repo = "botocore"; - rev = "c0734f100f61bbef413cb04d9890bbffbccd230f"; - sha256 = "sha256-ndSJdBF3NMNtpyHgYAksCUBDqlwPhugTkIK6Nby20oI="; + rev = "7083e5c204e139dc41f646e0ad85286b5e7c0c23"; + sha256 = "sha256-aiCc/CXoTem0a9wI/AMBRK3g2BXJi7LpnUY/BxBEKVM="; }; propagatedBuildInputs = super.botocore.propagatedBuildInputs ++ [py.pkgs.awscrt]; }); @@ -40,24 +40,17 @@ let in with py.pkgs; buildPythonApplication rec { pname = "awscli2"; - version = "2.2.40"; # N.B: if you change this, change botocore to a matching version too + version = "2.3.4"; # N.B: if you change this, change botocore to a matching version too src = fetchFromGitHub { owner = "aws"; repo = "aws-cli"; rev = version; - sha256 = "sha256-IHnNRER9ePKVI9ez15HgxLDR1n6QR0iRESgNqbxQPx8="; + sha256 = "sha256-C/NrU+1AixuN4T1N5Zs8xduUQiwuQWvXkitQRnPJdNw="; }; - patches = [ - (fetchpatch { - url = "https://github.com/mgorny/aws-cli/commit/85361123d2fa12eaedf912c046ffe39aebdd2bad.patch"; - sha256 = "sha256-1Rb+/CY7ze1/DbJ6TfqHF01cfI2vixZ1dT91bmHTg/A="; - }) - ]; - postPatch = '' - substituteInPlace setup.py \ + substituteInPlace setup.cfg \ --replace "colorama>=0.2.5,<0.4.4" "colorama" \ --replace "cryptography>=3.3.2,<3.4.0" "cryptography" \ --replace "docutils>=0.10,<0.16" "docutils" \ @@ -67,7 +60,7 @@ with py.pkgs; buildPythonApplication rec { --replace "distro>=1.5.0,<1.6.0" "distro" ''; - checkInputs = [ jsonschema mock nose ]; + checkInputs = [ jsonschema mock pytestCheckHook pytest-xdist ]; propagatedBuildInputs = [ awscrt @@ -93,8 +86,6 @@ with py.pkgs; buildPythonApplication rec { # https://github.com/NixOS/nixpkgs/issues/16144#issuecomment-225422439 export HOME=$TMP - - AWS_TEST_COMMAND=$out/bin/aws python scripts/ci/run-tests ''; postInstall = '' diff --git a/pkgs/tools/admin/exoscale-cli/default.nix b/pkgs/tools/admin/exoscale-cli/default.nix index 6c0a3e3bbd31..af2500083304 100644 --- a/pkgs/tools/admin/exoscale-cli/default.nix +++ b/pkgs/tools/admin/exoscale-cli/default.nix @@ -2,13 +2,13 @@ buildGoPackage rec { pname = "exoscale-cli"; - version = "1.45.2"; + version = "1.46.0"; src = fetchFromGitHub { owner = "exoscale"; repo = "cli"; rev = "v${version}"; - sha256 = "sha256-bzm8UNFWAXHBdarovNMyARW2xA4tSXIgIHpxROx4nOI="; + sha256 = "sha256-dWbuzzFCBJuSUUQFXY3axK+T9rsMaIMOCKa0ig96bJE="; }; goPackagePath = "github.com/exoscale/cli"; diff --git a/pkgs/tools/admin/google-cloud-sdk/default.nix b/pkgs/tools/admin/google-cloud-sdk/default.nix index 8ab301eeb38c..fd02e7ea418e 100644 --- a/pkgs/tools/admin/google-cloud-sdk/default.nix +++ b/pkgs/tools/admin/google-cloud-sdk/default.nix @@ -99,6 +99,11 @@ in stdenv.mkDerivation rec { mv $out/google-cloud-sdk/completion.bash.inc $out/share/bash-completion/completions/gcloud ln -s $out/share/bash-completion/completions/gcloud $out/share/bash-completion/completions/gsutil + # setup zsh completion + mkdir -p $out/share/zsh/site-functions + mv $out/google-cloud-sdk/completion.zsh.inc $out/share/zsh/site-functions/_gcloud + ln -s $out/share/zsh/site-functions/_gcloud $out/share/zsh/site-functions/_gsutil + # This directory contains compiled mac binaries. We used crcmod from # nixpkgs instead. rm -r $out/google-cloud-sdk/platform/gsutil/third_party/crcmod \ diff --git a/pkgs/tools/admin/lego/default.nix b/pkgs/tools/admin/lego/default.nix index 83d16c3eb772..cec4f2981298 100644 --- a/pkgs/tools/admin/lego/default.nix +++ b/pkgs/tools/admin/lego/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "lego"; - version = "4.5.2"; + version = "4.5.3"; src = fetchFromGitHub { owner = "go-acme"; repo = pname; rev = "v${version}"; - sha256 = "sha256-ytU1G0kT8/sx9kR8yrrGqUta+vi96aCovoABit0857g="; + sha256 = "sha256-xvTV6jZmQWs6g8Oq+IrwPZVS3fzY1/adg7IWh189ftU="; }; vendorSha256 = "sha256-EK2E2YWdk2X1awdUhMOJh+qr+jnnftnKuPPpiHzXZHk="; diff --git a/pkgs/tools/admin/lxd/default.nix b/pkgs/tools/admin/lxd/default.nix index fc07d33f647d..24e241f1b247 100644 --- a/pkgs/tools/admin/lxd/default.nix +++ b/pkgs/tools/admin/lxd/default.nix @@ -11,23 +11,15 @@ buildGoPackage rec { pname = "lxd"; - version = "4.19"; + version = "4.20"; goPackagePath = "github.com/lxc/lxd"; src = fetchurl { url = "https://linuxcontainers.org/downloads/lxd/lxd-${version}.tar.gz"; - sha256 = "0mxbzg8xra0qpd3g3z1b230f0519h56x4jnn09lbbqa92p5zck3f"; + sha256 = "1mcf4i4z9y4l895v50amx8nix6wnaxv9h44012vj8w6wwbr4wl1m"; }; - patches = [ - # lxd/checkfeature: check whether the kernel supports core scheduling - (fetchpatch { - url = "https://github.com/lxc/lxd/commit/ba6be1043714458b29c4b37687d4f624ee421943.patch"; - sha256 = "0716129n70c6i695fyi1j8q6cls7g62vkdpcrlfrr9i324y3w1dx"; - }) - ]; - postPatch = '' substituteInPlace shared/usbid/load.go \ --replace "/usr/share/misc/usb.ids" "${hwdata}/share/hwdata/usb.ids" diff --git a/pkgs/tools/admin/pulumi/data.nix b/pkgs/tools/admin/pulumi/data.nix index 0b1d674a6460..568ff7292f08 100644 --- a/pkgs/tools/admin/pulumi/data.nix +++ b/pkgs/tools/admin/pulumi/data.nix @@ -1,393 +1,393 @@ # DO NOT EDIT! This file is generated automatically by update.sh { }: { - version = "3.16.0"; + version = "3.17.1"; pulumiPkgs = { x86_64-linux = [ { - url = "https://get.pulumi.com/releases/sdk/pulumi-v3.16.0-linux-x64.tar.gz"; - sha256 = "0c9glgkwsbdj7iii0ng8znjfhlz51ph53y3ilnn3380368c4hxbg"; + url = "https://get.pulumi.com/releases/sdk/pulumi-v3.17.1-linux-x64.tar.gz"; + sha256 = "1npm5jv0wcylidirxgfxxmp21mv1r6xl2lz9x0hdjmrs2cr1kmrf"; + } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-hcloud-v1.6.0-linux-amd64.tar.gz"; + sha256 = "198m5fdppwzpqr30vpvpl8sjx90rng8q8cxvrbvaj179jnfg3bm2"; } { url = "https://api.pulumi.com/releases/plugins/pulumi-resource-consul-v3.4.0-linux-amd64.tar.gz"; sha256 = "0wzbwpnnjm8lnph6kh2nrb0ns2v4y70sp10pp9qnwhcxggqjpb5r"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-github-v4.6.0-linux-amd64.tar.gz"; - sha256 = "151bw127nxl5bdyqwbvkg0i8fi6060n8yn2skdb95s9p7f1b1fvp"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-postgresql-v3.2.0-linux-amd64.tar.gz"; - sha256 = "1lmy0dmpspzflc9z8p4w1cz47lbqnbkq8dng3v40lpbs75pnprvs"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-mailgun-v3.2.0-linux-amd64.tar.gz"; - sha256 = "0jxcwn3zwqwg29ib5wylmkg8bpzd0vm86yxylh6b2nwfnbnn5d9v"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-gcp-v5.25.0-linux-amd64.tar.gz"; - sha256 = "1gdwbpls41svnmcgk042p5sp70pbncx8ryilgcxkky091fqxsbfh"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-azure-v4.24.0-linux-amd64.tar.gz"; - sha256 = "0l1gb324svdxn4i21xfxhmyf1kj25lvg51r53fmmlws12crxd0x5"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-linode-v3.4.0-linux-amd64.tar.gz"; - sha256 = "0jmbfy6y0l7zpzwndz6xj6jv20ax9rbg8nbqwcadjf96a3zglwhf"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-aws-v4.25.0-linux-amd64.tar.gz"; - sha256 = "0mv7n1cd4bn5kws2ddzyisdyy1sm1lhhp5xymnzcgn4fj7q379l9"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-mysql-v3.0.0-linux-amd64.tar.gz"; - sha256 = "04gaimdzh04v7f11xw1b7p95rbb142kbnix1zqas68wd6vpw9kyp"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-openstack-v3.4.0-linux-amd64.tar.gz"; - sha256 = "1apx62przhzn712pz89lbx94da352b0n794cz753vlfqvxpkfifq"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-hcloud-v1.5.0-linux-amd64.tar.gz"; - sha256 = "194kym832zfnf58z44y5n789xsvqp2dr3jy5sffqqhfrgcgabvr2"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-equinix-metal-v3.0.0-linux-amd64.tar.gz"; - sha256 = "0bp7ki3slszmy1vh4a5d4y4fhbvafrazj1cjf081xv91gi99xxz6"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-auth0-v2.2.0-linux-amd64.tar.gz"; - sha256 = "0d88xfi7zzmpyrnvakwxsyavdx6d5hmfrcf4jhmd53mni0m0551l"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-digitalocean-v4.8.0-linux-amd64.tar.gz"; - sha256 = "0dc96mvy76i0d70jp8gln14cwzsgdxccyhrxrcf3kq38j4vf3bl1"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-kubernetes-v3.8.3-linux-amd64.tar.gz"; - sha256 = "0vigkbsiydfhiiv1rjy7ba9p7h5gbbyryrq3qmxr3bsbgv6aqixz"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-vault-v4.5.1-linux-amd64.tar.gz"; - sha256 = "0cb2b4rrz7zvdpnf0iff21y4kass7gqfimj854fh6za012j18fnx"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-packet-v3.2.2-linux-amd64.tar.gz"; - sha256 = "0glbjhgrb2hiyhd6kwmy7v384j8zw641pw9737g1fczv3x16a3s3"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-gitlab-v4.2.0-linux-amd64.tar.gz"; - sha256 = "1h5159y7xlslnijs8lpi4vqgvj2px6whxk9m17p9n7wiyqbmd5na"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-postgresql-v3.3.0-linux-amd64.tar.gz"; + sha256 = "05nfdwgfzi5f3hgj2g6dccaidqf9a9xzlv5vp3cd1rsxd159yk9j"; } { url = "https://api.pulumi.com/releases/plugins/pulumi-resource-datadog-v4.3.0-linux-amd64.tar.gz"; sha256 = "0mckcwyngxiv46khvchaxdylcgk82b5j5hlfjiky5qg60bic4gnr"; } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-docker-v3.1.0-linux-amd64.tar.gz"; - sha256 = "0ffqah4anhdacmfb8n3hdq17jhqq0qclc0l0cq77hvhvgn39yy4r"; - } { url = "https://api.pulumi.com/releases/plugins/pulumi-resource-random-v4.3.1-linux-amd64.tar.gz"; sha256 = "1ixmsxawp0qbyjs37c74gcvj2icpbda6znl17yp9bhiyvnrdvxn7"; } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-auth0-v2.2.0-linux-amd64.tar.gz"; + sha256 = "0d88xfi7zzmpyrnvakwxsyavdx6d5hmfrcf4jhmd53mni0m0551l"; + } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-equinix-metal-v3.1.0-linux-amd64.tar.gz"; + sha256 = "1rv6l82b1v44fa685dqq7ivsr1y4xaqln0mqd9hyqnajkb2761d5"; + } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-linode-v3.5.0-linux-amd64.tar.gz"; + sha256 = "00qvwqynyyj72lp41c4calxx53ckf2dg0cpn9s7sr9alvnffvwzp"; + } { url = "https://api.pulumi.com/releases/plugins/pulumi-resource-cloudflare-v4.0.0-linux-amd64.tar.gz"; sha256 = "1p21963qr8rdl5jp7f05j02yq0ab3flybvzjn7xadcl7m85mkyxh"; } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-mysql-v3.1.0-linux-amd64.tar.gz"; + sha256 = "0lj01hyjyq3qazkryvvxkx6nwai3bac9shqxb6hcqv4pfdjzzxhr"; + } { url = "https://api.pulumi.com/releases/plugins/pulumi-resource-vsphere-v4.0.1-linux-amd64.tar.gz"; sha256 = "0xrq4ffkaa0z5w2g7b9fdll3sh8wpzd6fg0xay7hfzjnl65dl3mp"; } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-azure-v4.26.0-linux-amd64.tar.gz"; + sha256 = "1rzwgfz2ikbcjp99yiiai2cqawk80xhwrc7335fylifrvl3wsqis"; + } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-mailgun-v3.3.0-linux-amd64.tar.gz"; + sha256 = "0nri27c71kf3pjivd0w9ymkl4rn39flh5n2rphi4gn6v4kfb1192"; + } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-gcp-v5.26.0-linux-amd64.tar.gz"; + sha256 = "0pd1a2xhhhxyb2sblq474hrwrm18k2dh4c20r3b2xqz77l25nzig"; + } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-packet-v3.2.2-linux-amd64.tar.gz"; + sha256 = "0glbjhgrb2hiyhd6kwmy7v384j8zw641pw9737g1fczv3x16a3s3"; + } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-digitalocean-v4.8.0-linux-amd64.tar.gz"; + sha256 = "0dc96mvy76i0d70jp8gln14cwzsgdxccyhrxrcf3kq38j4vf3bl1"; + } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-vault-v4.6.0-linux-amd64.tar.gz"; + sha256 = "1536pz40m4a34swjxpy7vw7xik6jqfspwdnn2z49n8a42y691cd9"; + } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-gitlab-v4.2.0-linux-amd64.tar.gz"; + sha256 = "1h5159y7xlslnijs8lpi4vqgvj2px6whxk9m17p9n7wiyqbmd5na"; + } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-openstack-v3.5.0-linux-amd64.tar.gz"; + sha256 = "0xy6h16vdg55rc0qmhxc2r1hz3iv78iyjx4i5j6jmlcwpgrwdlii"; + } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-github-v4.6.0-linux-amd64.tar.gz"; + sha256 = "151bw127nxl5bdyqwbvkg0i8fi6060n8yn2skdb95s9p7f1b1fvp"; + } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-kubernetes-v3.9.0-linux-amd64.tar.gz"; + sha256 = "19rmwbizkhpxlwayd32hfk2dvz9mddkbg956ryckhfgfis6s3scr"; + } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-docker-v3.1.0-linux-amd64.tar.gz"; + sha256 = "0ffqah4anhdacmfb8n3hdq17jhqq0qclc0l0cq77hvhvgn39yy4r"; + } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-aws-v4.27.2-linux-amd64.tar.gz"; + sha256 = "0dngfi5yy01yngwl9x65b9w67zrihhkbccfsr989ygbzxs3gi9bj"; + } ]; x86_64-darwin = [ { - url = "https://get.pulumi.com/releases/sdk/pulumi-v3.16.0-darwin-x64.tar.gz"; - sha256 = "1b8670hk7xc4wfkgwy2jy7ii4vsa3rz8g4w74pxzh09if7lxpvsd"; + url = "https://get.pulumi.com/releases/sdk/pulumi-v3.17.1-darwin-x64.tar.gz"; + sha256 = "0cn6zramx5hjwd9w3i0kfpzsdz0j9pskqx43yram6dh7w7vh3wxw"; + } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-hcloud-v1.6.0-darwin-amd64.tar.gz"; + sha256 = "0vh8gnmjkchz5245iwgb1slwahq7cw18g6x9fihyqzzlpz83lr7h"; } { url = "https://api.pulumi.com/releases/plugins/pulumi-resource-consul-v3.4.0-darwin-amd64.tar.gz"; sha256 = "0p3zkgr557ngl6pjdidrp76b741nkdsw4s7wf1aj4mpw74fshm3g"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-github-v4.6.0-darwin-amd64.tar.gz"; - sha256 = "183y60zvh2i20a3wg7yl1dm6bkpka0y6plnmb8746x7v9j5g4xlr"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-postgresql-v3.2.0-darwin-amd64.tar.gz"; - sha256 = "1j7z5dbqzsdq1q8ks9g5pwzyc3ml6avhhp6xj94dzdhskl6pd8w5"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-mailgun-v3.2.0-darwin-amd64.tar.gz"; - sha256 = "1z38yhmbmna3d397kdgribqffgagw28xf6ffhksp428dcn979yh5"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-gcp-v5.25.0-darwin-amd64.tar.gz"; - sha256 = "1h4hyhjbbcn5643nimdznc8caim71bknfib9skkgjykfvbfsbprq"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-azure-v4.24.0-darwin-amd64.tar.gz"; - sha256 = "0lbf59aky33n3w3mwp4f1x6wali5q13q1ygx8qr1k72nzbp4nv3k"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-linode-v3.4.0-darwin-amd64.tar.gz"; - sha256 = "0vd527sx49shr3mpbm5bs4sspmm6vsjli6zlbl5w61y85jp2as1m"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-aws-v4.25.0-darwin-amd64.tar.gz"; - sha256 = "0zm073ga7xaq04dffj2mh4a0fpabxi6hmjvd6kj4ly9wr7kcphw0"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-mysql-v3.0.0-darwin-amd64.tar.gz"; - sha256 = "18vrp0zzi92x4l5nkjszvd0zr7pk6nl6s3h5a3hvsz5qrj2830q3"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-openstack-v3.4.0-darwin-amd64.tar.gz"; - sha256 = "1cp7zfzv6jzjx7c5ywwlbhqwf6xz2yzqdbapdlhjq4wbiy5w58nl"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-hcloud-v1.5.0-darwin-amd64.tar.gz"; - sha256 = "1gf83dv5wqvmx8ll7my3c8biklrddjrv069g97d3n510m0k7w85w"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-equinix-metal-v3.0.0-darwin-amd64.tar.gz"; - sha256 = "1i73sxh6vf6adg6as1q1mab3fcjm7ma7gixj2b0y0d2a5d78lhpa"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-auth0-v2.2.0-darwin-amd64.tar.gz"; - sha256 = "12mkr0xczdnp21k0k7qn4r3swkaq3pr6v2z853p1db7ksz5kds23"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-digitalocean-v4.8.0-darwin-amd64.tar.gz"; - sha256 = "1lfai2xd9538cq89b4jg85hj0slnvbwndd24y2g2q9h5qla08cx2"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-kubernetes-v3.8.3-darwin-amd64.tar.gz"; - sha256 = "07vpzp23frgaqarrkx1i6bnzmx3g9fgw5hjnxpf80ckhjpr93pc5"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-vault-v4.5.1-darwin-amd64.tar.gz"; - sha256 = "1n82xwkngql039m3pa1pwa8wvqg089mr8xnai67jyj1kryjsij56"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-packet-v3.2.2-darwin-amd64.tar.gz"; - sha256 = "0621njipng32x43lw8n49mapq10lnvibg8vlvgciqsfvrbpz1yp5"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-gitlab-v4.2.0-darwin-amd64.tar.gz"; - sha256 = "0r2ykjwam5m2mfiibhq993s8n5pzmks837cwb57jwgwx8lc3ra4x"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-postgresql-v3.3.0-darwin-amd64.tar.gz"; + sha256 = "0q19sh7l1mjl40i5vdsrjfldncxnicalmlgv3yjkw5xpxkgr98z0"; } { url = "https://api.pulumi.com/releases/plugins/pulumi-resource-datadog-v4.3.0-darwin-amd64.tar.gz"; sha256 = "04hhvakbrvjqzlhhacpb4syy6bz8qgkhqfl8339wjapsczy776j5"; } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-docker-v3.1.0-darwin-amd64.tar.gz"; - sha256 = "0j8ysk4wh78xhk3nv6c1dvvyw5ihs7amwlyqicch52yc6jq3v5a6"; - } { url = "https://api.pulumi.com/releases/plugins/pulumi-resource-random-v4.3.1-darwin-amd64.tar.gz"; sha256 = "1dy4n03xvirg6fihiid786d88qlkyqkvk4fq6ggnxc92620x7342"; } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-auth0-v2.2.0-darwin-amd64.tar.gz"; + sha256 = "12mkr0xczdnp21k0k7qn4r3swkaq3pr6v2z853p1db7ksz5kds23"; + } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-equinix-metal-v3.1.0-darwin-amd64.tar.gz"; + sha256 = "04l07fqzf3fs7hj4giggzyjv9979qcpxrqbiapdjp7x4qsbsz0fv"; + } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-linode-v3.5.0-darwin-amd64.tar.gz"; + sha256 = "09biqsrcd4h01m6dkfdgb2gnly229ci8a0sd2rr1m75j749ijfh7"; + } { url = "https://api.pulumi.com/releases/plugins/pulumi-resource-cloudflare-v4.0.0-darwin-amd64.tar.gz"; sha256 = "1idvdcmbbia0cwkw5v7zp7695p1a6sfmrgsfmzn0r9p8lyg66k8w"; } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-mysql-v3.1.0-darwin-amd64.tar.gz"; + sha256 = "0fhhc2k0g8mpxzcgci4jl3m59q3n8w3nka94l0n7r9cvs81099n6"; + } { url = "https://api.pulumi.com/releases/plugins/pulumi-resource-vsphere-v4.0.1-darwin-amd64.tar.gz"; sha256 = "1qb2gaiinclmbswyn5aakwjmm3gaggscckb1q2syx69k42hvp3s3"; } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-azure-v4.26.0-darwin-amd64.tar.gz"; + sha256 = "03ccnifs1maxnr7qnqw1mn3lc7x2c06icbc9m9j218bx16lwf8jq"; + } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-mailgun-v3.3.0-darwin-amd64.tar.gz"; + sha256 = "06s58xlwm3wf7895bzsqx4jsfb0kbxanzlaf21jff45y62nk1f1p"; + } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-gcp-v5.26.0-darwin-amd64.tar.gz"; + sha256 = "1f06x2h4i15vjzjyzcl5f01by2639hsfij2daayj5xiji3b415ps"; + } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-packet-v3.2.2-darwin-amd64.tar.gz"; + sha256 = "0621njipng32x43lw8n49mapq10lnvibg8vlvgciqsfvrbpz1yp5"; + } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-digitalocean-v4.8.0-darwin-amd64.tar.gz"; + sha256 = "1lfai2xd9538cq89b4jg85hj0slnvbwndd24y2g2q9h5qla08cx2"; + } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-vault-v4.6.0-darwin-amd64.tar.gz"; + sha256 = "05adn2mnfrhnqvq4cngsvjg489339azzsf6bzd9qj24qqwm9x5v3"; + } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-gitlab-v4.2.0-darwin-amd64.tar.gz"; + sha256 = "0r2ykjwam5m2mfiibhq993s8n5pzmks837cwb57jwgwx8lc3ra4x"; + } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-openstack-v3.5.0-darwin-amd64.tar.gz"; + sha256 = "144wz00hcd6zbybm0b7gqy8by3nnszf3885znvsichig23p1h76c"; + } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-github-v4.6.0-darwin-amd64.tar.gz"; + sha256 = "183y60zvh2i20a3wg7yl1dm6bkpka0y6plnmb8746x7v9j5g4xlr"; + } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-kubernetes-v3.9.0-darwin-amd64.tar.gz"; + sha256 = "148wdcdmip8rlh61clhcg44rk1kmvc15dkga1nhp8ngzry1f7lf2"; + } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-docker-v3.1.0-darwin-amd64.tar.gz"; + sha256 = "0j8ysk4wh78xhk3nv6c1dvvyw5ihs7amwlyqicch52yc6jq3v5a6"; + } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-aws-v4.27.2-darwin-amd64.tar.gz"; + sha256 = "0ki3wq879ya82slmz75r6g4hzm4nmmgnwm3pjbhmls09irn46wc3"; + } ]; aarch64-linux = [ { - url = "https://get.pulumi.com/releases/sdk/pulumi-v3.16.0-linux-arm64.tar.gz"; - sha256 = "0jkjgp4qjlvgm39axpj8ahkwb6nlgax52x72xnmi3a69z84vgyp1"; + url = "https://get.pulumi.com/releases/sdk/pulumi-v3.17.1-linux-arm64.tar.gz"; + sha256 = "1gwcrbwwmclxsviqmqb9q1swg4kz2463p42939vlv2r09lwpfvmi"; + } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-hcloud-v1.6.0-linux-arm64.tar.gz"; + sha256 = "0f2frlkcai1489amas1yglpckwwz93acq1xllv88s2j1l6sab5vd"; } { url = "https://api.pulumi.com/releases/plugins/pulumi-resource-consul-v3.4.0-linux-arm64.tar.gz"; sha256 = "1hiqcy51ag4y8j47di5h07mnplrhpc5f406ab6car2c06fwr2wdn"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-github-v4.6.0-linux-arm64.tar.gz"; - sha256 = "1jdjvx123qwd4mncnzms1ps55041ad5wl8ijr5qfay1yjphy4zn8"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-postgresql-v3.2.0-linux-arm64.tar.gz"; - sha256 = "0mddv37k87wiygh6x9bnxpcr721qbmbqf6l5zk3xl61n56j8qyb1"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-mailgun-v3.2.0-linux-arm64.tar.gz"; - sha256 = "11yslyxhsqchqyd31b10krgxgf2shi5pxncw79zj26w31qcqdv3x"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-gcp-v5.25.0-linux-arm64.tar.gz"; - sha256 = "0l0ipkqp7920jrba43a3mh5z83p6nbglzyl5zaig7jdms97qchi5"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-azure-v4.24.0-linux-arm64.tar.gz"; - sha256 = "0yhnmxpjfirp187zw4xnhh23b186iv61xjidvlkrnjcmrv2ldpqv"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-linode-v3.4.0-linux-arm64.tar.gz"; - sha256 = "0ybw5cbiw64zmaqjwlfk5b73h5sy0pk40f15hq41d9rdkc0sypxi"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-aws-v4.25.0-linux-arm64.tar.gz"; - sha256 = "0qsvhinsnm8n1w984yvdvwd7gw2fcm7jgh8q30ljb0ikh4d5p98b"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-mysql-v3.0.0-linux-arm64.tar.gz"; - sha256 = "1slrl020xl092hjfr92zjf8i2ys8vzr3nxqh65fhnl0fzfsllvn0"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-openstack-v3.4.0-linux-arm64.tar.gz"; - sha256 = "1fllv7pnn9jm83b6ck6fk44rk5vmsv4iv1x54nxdfa0wyrkx1ah9"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-hcloud-v1.5.0-linux-arm64.tar.gz"; - sha256 = "0ap4izb3507rw965qvww1nd2h9jz7ilav92fjdhhvf33g44r6r8y"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-equinix-metal-v3.0.0-linux-arm64.tar.gz"; - sha256 = "0mwpbvv62k8fg07447wwfigs4li4n78fswpzwi4alsjrkqlmw9dj"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-auth0-v2.2.0-linux-arm64.tar.gz"; - sha256 = "1l7zpvacq6kyzj8n82drs9gdfa16k4j945w8nsd0z33byrswxr3w"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-digitalocean-v4.8.0-linux-arm64.tar.gz"; - sha256 = "0hq4l91ynjk5qzqcwvzqpd978wikqdx6lxngrawdkk501y0yh6f6"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-kubernetes-v3.8.3-linux-arm64.tar.gz"; - sha256 = "1is34y7npwyl11fxksd68f3gc28f1pxm6ml9qkihvpvmihylan3i"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-vault-v4.5.1-linux-arm64.tar.gz"; - sha256 = "0kxi3fm2463bq6n0bnf0sbf4zjhg0c86bxw52dlmc8kp2zqc6lr3"; - } - # pulumi-resource-packet skipped (does not exist on remote) - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-gitlab-v4.2.0-linux-arm64.tar.gz"; - sha256 = "1sc8rf930cz6nkyhqn6p0h7450iqzdsrlw2smhp8yyjjvcjmsksf"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-postgresql-v3.3.0-linux-arm64.tar.gz"; + sha256 = "0j2c23ii4dn9yhpw6nymij65gv82y1xp4gi8lgxxf41b1i9bpb2i"; } { url = "https://api.pulumi.com/releases/plugins/pulumi-resource-datadog-v4.3.0-linux-arm64.tar.gz"; sha256 = "1hxaz0m33vf92d1vwksmib5lnpl57yrh8nf90nqmmzvjzajkzzbl"; } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-docker-v3.1.0-linux-arm64.tar.gz"; - sha256 = "1lh1g90ab4blqmvx0yfp516hfsd6n1y751ab7fzhv7hcajf3klvi"; - } { url = "https://api.pulumi.com/releases/plugins/pulumi-resource-random-v4.3.1-linux-arm64.tar.gz"; sha256 = "12iv8vjnal2ym70rxmdnvi02x6md7fxi8jbzhzfw526pzqs1dc47"; } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-auth0-v2.2.0-linux-arm64.tar.gz"; + sha256 = "1l7zpvacq6kyzj8n82drs9gdfa16k4j945w8nsd0z33byrswxr3w"; + } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-equinix-metal-v3.1.0-linux-arm64.tar.gz"; + sha256 = "175bqcamkd2illd57gkycsfh5kyjw700g7phjsg057jij3cdfsr8"; + } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-linode-v3.5.0-linux-arm64.tar.gz"; + sha256 = "1lz5dm1sgnydyi3rjp33y1lvs8wmy9lg0n71niibh1k4ppqbwm2m"; + } { url = "https://api.pulumi.com/releases/plugins/pulumi-resource-cloudflare-v4.0.0-linux-arm64.tar.gz"; sha256 = "0k4yi9xqrmd5m99lr27h672ycwyh138d9jhh3wvgpmnjpdxy28jm"; } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-mysql-v3.1.0-linux-arm64.tar.gz"; + sha256 = "17iaf72dzy108v1njan21n72a5gzxbycq396hjh293a141kppn1m"; + } { url = "https://api.pulumi.com/releases/plugins/pulumi-resource-vsphere-v4.0.1-linux-arm64.tar.gz"; sha256 = "03z7b32l2jp1si13qy2rjvkjw789sqaypza7q2k4vhwaxyiw715z"; } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-azure-v4.26.0-linux-arm64.tar.gz"; + sha256 = "1v5b5bwpzmr124xblrrr0rl0zbvky8ljcilyh0fmjgrmai25zbz2"; + } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-mailgun-v3.3.0-linux-arm64.tar.gz"; + sha256 = "14v7wm2gkhd064drw2l894dacdsm5lnndii5qzl5hsl6p9a5m970"; + } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-gcp-v5.26.0-linux-arm64.tar.gz"; + sha256 = "0vjdl01ggnf3hj0ak3dak5828d8cj8x05ny9hsii2cqdphxybsj4"; + } + # pulumi-resource-packet skipped (does not exist on remote) + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-digitalocean-v4.8.0-linux-arm64.tar.gz"; + sha256 = "0hq4l91ynjk5qzqcwvzqpd978wikqdx6lxngrawdkk501y0yh6f6"; + } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-vault-v4.6.0-linux-arm64.tar.gz"; + sha256 = "042mdf4l3nb8prialq8isr4iizsq7cjsz001ycshqs21j60kq0dq"; + } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-gitlab-v4.2.0-linux-arm64.tar.gz"; + sha256 = "1sc8rf930cz6nkyhqn6p0h7450iqzdsrlw2smhp8yyjjvcjmsksf"; + } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-openstack-v3.5.0-linux-arm64.tar.gz"; + sha256 = "0ybxnskqxry9nbv9y02rqszlykcrihmlpa275s09ypbw3bibrjya"; + } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-github-v4.6.0-linux-arm64.tar.gz"; + sha256 = "1jdjvx123qwd4mncnzms1ps55041ad5wl8ijr5qfay1yjphy4zn8"; + } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-kubernetes-v3.9.0-linux-arm64.tar.gz"; + sha256 = "10p015rhp9dsxcwp0a0k3xvkphya8vji4ndv66z73jzr6z3vfqzm"; + } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-docker-v3.1.0-linux-arm64.tar.gz"; + sha256 = "1lh1g90ab4blqmvx0yfp516hfsd6n1y751ab7fzhv7hcajf3klvi"; + } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-aws-v4.27.2-linux-arm64.tar.gz"; + sha256 = "0zgiaksn6x924g8lwcczfg8sm3jm747s4s6gbxv97p4cby4diw6m"; + } ]; aarch64-darwin = [ { - url = "https://get.pulumi.com/releases/sdk/pulumi-v3.16.0-darwin-arm64.tar.gz"; - sha256 = "0k7bz1nxigzgggr4qpnhhrmsijyrgs8w7iigqvk5pjd2issvbc3r"; + url = "https://get.pulumi.com/releases/sdk/pulumi-v3.17.1-darwin-arm64.tar.gz"; + sha256 = "0xl5191acq12ixd4dpcrg5d32dp43qfbj5m2k0q78nsq8p85y772"; + } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-hcloud-v1.6.0-darwin-arm64.tar.gz"; + sha256 = "0bjpzd81913p6bgcq4al0prnaa66ag3h9v832cvnksm128n5yqmz"; } { url = "https://api.pulumi.com/releases/plugins/pulumi-resource-consul-v3.4.0-darwin-arm64.tar.gz"; sha256 = "18ggnqx9zh8kl5h6nn2sa4zxvyby9pvscrvqnsam2l9yjv86r7i0"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-github-v4.6.0-darwin-arm64.tar.gz"; - sha256 = "0h06wgmjqqvhsl7arx7k7q0mi9i484fj7bxbh4wvkjgxlhnm93ls"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-postgresql-v3.2.0-darwin-arm64.tar.gz"; - sha256 = "0fj1ai1kv8xgmsvfbmy5gsinxag70rx9a9gkifqgcpn3r9mj48ks"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-mailgun-v3.2.0-darwin-arm64.tar.gz"; - sha256 = "1nsqxci7dzg433ydk34fkiq7clq00m45rj26rs4whx65y8hdhxrb"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-gcp-v5.25.0-darwin-arm64.tar.gz"; - sha256 = "0134jxl4jca6y7wd23kd6hg1cq28qxvdvjl5148iq85i23wafymr"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-azure-v4.24.0-darwin-arm64.tar.gz"; - sha256 = "19hxs3p7xvgw493grs02b7b1lhfqizqs6ha6zrwjx70kpwbxbkcd"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-linode-v3.4.0-darwin-arm64.tar.gz"; - sha256 = "1iyc67r551bi1h20lfb2qp5b2ds8kf09gklbaz73k90hcrf0g9la"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-aws-v4.25.0-darwin-arm64.tar.gz"; - sha256 = "15vpbkly9cvwajrridhj9mkjx7ba0hm2c9gbgzg07855ncb0kxaj"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-mysql-v3.0.0-darwin-arm64.tar.gz"; - sha256 = "10a2f5kdgk3jcd1441zbfcfnrl5zj6ks832jjmbyym33by7scvgc"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-openstack-v3.4.0-darwin-arm64.tar.gz"; - sha256 = "0ycqnlixxczqxa56mij8z35s50hg5k4ygw13mqqw66rpg7jvsvgk"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-hcloud-v1.5.0-darwin-arm64.tar.gz"; - sha256 = "1y0wc1279ka05ng7wq6skmwyrmp1sb2sc64wiqx52napxvzjpv9r"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-equinix-metal-v3.0.0-darwin-arm64.tar.gz"; - sha256 = "1hzhlxbwji4p8apx4rnqllsgf1k11w49rplz0syzmzb2fxpkif75"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-auth0-v2.2.0-darwin-arm64.tar.gz"; - sha256 = "1rmvc2kgjmb978sfmlga6xy4i0f629lk1l95i30wg0rmj1hx3dag"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-digitalocean-v4.8.0-darwin-arm64.tar.gz"; - sha256 = "1w78lqdf4ynfhl5h0bzxmvqnf4s59mflbdlbqhxq78qxwwq4v193"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-kubernetes-v3.8.3-darwin-arm64.tar.gz"; - sha256 = "08jwgvklg2r78ag7cr5pm4ngy6s0wnj6z4ari50bpszzh69m9qiy"; - } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-vault-v4.5.1-darwin-arm64.tar.gz"; - sha256 = "0h9lj565slf1gvzkk8vlk285jgssi62kmayim8473fgbgp3yj6jr"; - } - # pulumi-resource-packet skipped (does not exist on remote) - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-gitlab-v4.2.0-darwin-arm64.tar.gz"; - sha256 = "1c3pchbnk6dsnxsl02ypq7s4mmkxdgxszdhql1klpx5js7i1lv8k"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-postgresql-v3.3.0-darwin-arm64.tar.gz"; + sha256 = "1i5ipmidg0yspayxyglbjaihajhj1bsk46saxkncfrkvqnh4iq50"; } { url = "https://api.pulumi.com/releases/plugins/pulumi-resource-datadog-v4.3.0-darwin-arm64.tar.gz"; sha256 = "09vllijaql7141h0dw3p5ikvv4kp0mzfl5f0n7gd9d4pwl3q3yzv"; } - { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-docker-v3.1.0-darwin-arm64.tar.gz"; - sha256 = "1z0gd0fagv55dl3ki340h0ljw7dqj8818w4072pc5xxy5id90gb0"; - } { url = "https://api.pulumi.com/releases/plugins/pulumi-resource-random-v4.3.1-darwin-arm64.tar.gz"; sha256 = "0jrihnwfh5wvc95nipqv7ak77kq9xj0pk5hlapv9w2ls5pwykv0r"; } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-auth0-v2.2.0-darwin-arm64.tar.gz"; + sha256 = "1rmvc2kgjmb978sfmlga6xy4i0f629lk1l95i30wg0rmj1hx3dag"; + } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-equinix-metal-v3.1.0-darwin-arm64.tar.gz"; + sha256 = "0wzi2mb6jqmzyww2pbdx7cysi0xn4hp74g5n0jyz3mw68s5fm7vf"; + } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-linode-v3.5.0-darwin-arm64.tar.gz"; + sha256 = "1y77wjr7mpkf3vvqvp37bcdaci31bsjngg0kcsdwsqn93xs59vww"; + } { url = "https://api.pulumi.com/releases/plugins/pulumi-resource-cloudflare-v4.0.0-darwin-arm64.tar.gz"; sha256 = "0fsmmgq0hvzyrw6vrdf3pppxjcj94fxxp52dl73r4f5wjkays33c"; } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-mysql-v3.1.0-darwin-arm64.tar.gz"; + sha256 = "0kym9f36h8b7s1smlmgazbzv8jjfpwxk6wv036bhx2xm3ysc7rgp"; + } { url = "https://api.pulumi.com/releases/plugins/pulumi-resource-vsphere-v4.0.1-darwin-arm64.tar.gz"; sha256 = "0ci3xnxnwrk6dds21yifis1mrz24z2nxqdbya0qpqprkq6syvx41"; } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-azure-v4.26.0-darwin-arm64.tar.gz"; + sha256 = "141mm2wa211gbs1kzqzq9ivjjz1bd93bb6vh9s28rz4z9ciaq44z"; + } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-mailgun-v3.3.0-darwin-arm64.tar.gz"; + sha256 = "0n60fk2nyb1idf4rdc61jxjpzpw4v9106gwn6r1by10g8f1712yr"; + } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-gcp-v5.26.0-darwin-arm64.tar.gz"; + sha256 = "1lm26pinz7bjzv7bk22xq2qhyv5a4v7x7kwbl98sdv0gl1alj44f"; + } + # pulumi-resource-packet skipped (does not exist on remote) + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-digitalocean-v4.8.0-darwin-arm64.tar.gz"; + sha256 = "1w78lqdf4ynfhl5h0bzxmvqnf4s59mflbdlbqhxq78qxwwq4v193"; + } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-vault-v4.6.0-darwin-arm64.tar.gz"; + sha256 = "0vh64l3pxg76gxxjg9gsy2jd9zjg6yjr1vx343y7f2g9p0pbir29"; + } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-gitlab-v4.2.0-darwin-arm64.tar.gz"; + sha256 = "1c3pchbnk6dsnxsl02ypq7s4mmkxdgxszdhql1klpx5js7i1lv8k"; + } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-openstack-v3.5.0-darwin-arm64.tar.gz"; + sha256 = "0wkppnwmij7sy8iwdg9q9aknwckh90ybxpdqpr5brz9ay1svqjix"; + } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-github-v4.6.0-darwin-arm64.tar.gz"; + sha256 = "0h06wgmjqqvhsl7arx7k7q0mi9i484fj7bxbh4wvkjgxlhnm93ls"; + } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-kubernetes-v3.9.0-darwin-arm64.tar.gz"; + sha256 = "07ldq1anzrznan2a1x1igmgljfh6dx12cypggcyma7axiqj95ww1"; + } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-docker-v3.1.0-darwin-arm64.tar.gz"; + sha256 = "1z0gd0fagv55dl3ki340h0ljw7dqj8818w4072pc5xxy5id90gb0"; + } + { + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-aws-v4.27.2-darwin-arm64.tar.gz"; + sha256 = "0l8x9b3np0cwk606621vx2c3k7a67hr7022jfdmaa5ajm44fn4ai"; + } ]; }; } diff --git a/pkgs/tools/admin/pulumi/update.sh b/pkgs/tools/admin/pulumi/update.sh index 0cbd669a6bf0..dcd4fd1256dc 100755 --- a/pkgs/tools/admin/pulumi/update.sh +++ b/pkgs/tools/admin/pulumi/update.sh @@ -6,7 +6,7 @@ API_URL="https://api.github.com/repos/pulumi" # Version of Pulumi from # https://www.pulumi.com/docs/get-started/install/versions/ -VERSION="3.16.0" +VERSION="3.17.1" # A hashmap containing a plugin's name and it's respective repository inside # Pulumi's Github organization diff --git a/pkgs/tools/admin/realvnc-vnc-viewer/default.nix b/pkgs/tools/admin/realvnc-vnc-viewer/default.nix index 690c215471cf..2e8eabfc1a36 100644 --- a/pkgs/tools/admin/realvnc-vnc-viewer/default.nix +++ b/pkgs/tools/admin/realvnc-vnc-viewer/default.nix @@ -2,18 +2,18 @@ stdenv.mkDerivation rec { pname = "realvnc-vnc-viewer"; - version = "6.21.406"; + version = "6.21.920"; src = { "x86_64-linux" = fetchurl { url = "https://www.realvnc.com/download/file/viewer.files/VNC-Viewer-${version}-Linux-x64.rpm"; - sha256 = "0rnizzanaykqg1vfy56p8abc4fmgpbibj54j4c1v81zsj3kmahka"; + sha256 = "1qghc5380h4b2pczksmky3kcffz5wn9shw033w4f969wl96p31fz"; }; "i686-linux" = fetchurl { url = "https://www.realvnc.com/download/file/viewer.files/VNC-Viewer-${version}-Linux-x86.rpm"; - sha256 = "1rlxfiqymi1licn2spyiqa00kiwzhdr0pkh7vv3ai6gb9f6phk31"; + sha256 = "034iwqxpqhnm6i292fakva7vkwrrzamwcvbm7xyccpd54adj0grn"; }; - }.${stdenv.system}; + }.${stdenv.system} or (throw "Unsupported system: ${stdenv.hostPlatform.system}"); nativeBuildInputs = [ autoPatchelfHook rpmextract ]; buildInputs = [ libX11 libXext ]; diff --git a/pkgs/tools/admin/stripe-cli/default.nix b/pkgs/tools/admin/stripe-cli/default.nix index 549b60c6dbeb..ea3ccc8162f8 100644 --- a/pkgs/tools/admin/stripe-cli/default.nix +++ b/pkgs/tools/admin/stripe-cli/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "stripe-cli"; - version = "1.7.3"; + version = "1.7.4"; src = fetchFromGitHub { owner = "stripe"; repo = pname; rev = "v${version}"; - sha256 = "sha256-Hlh2nfqQD+HMoJ2n1vfffn5ieEKSMtXpdoM0ydFQqrc="; + sha256 = "sha256-2wiry3bBrxrhyyPT/81VpAS34XBZgZsz8Wlq8Qeybgk="; }; - vendorSha256 = "sha256-DTNwgerJ7qZxH4imdrST7TaR20oevDluEDgAlubg5hw="; + vendorSha256 = "sha256-Lgd1vGXlZw0s4dVC0TlGEYoGOLrJPc/bZ75Mzke4rrg="; subPackages = [ "cmd/stripe" diff --git a/pkgs/tools/admin/synapse-admin/default.nix b/pkgs/tools/admin/synapse-admin/default.nix new file mode 100644 index 000000000000..8ca0816f9e42 --- /dev/null +++ b/pkgs/tools/admin/synapse-admin/default.nix @@ -0,0 +1,26 @@ +{ lib +, stdenv +, fetchzip +}: + +stdenv.mkDerivation rec { + pname = "synapse-admin"; + version = "0.8.3"; + + src = fetchzip { + url = "https://github.com/Awesome-Technologies/synapse-admin/releases/download/${version}/synapse-admin-${version}.tar.gz"; + hash = "sha256-LAdMxzUffnykiDHvQYu9uNxK4428Q9CxQY2q02AcUco="; + }; + + installPhase = '' + cp -r . $out + ''; + + meta = with lib; { + description = "Admin UI for Synapse Homeservers"; + homepage = "https://github.com/Awesome-Technologies/synapse-admin"; + license = licenses.apsl20; + platforms = platforms.all; + maintainers = with maintainers; [ mkg20001 ]; + }; +} diff --git a/pkgs/tools/archivers/7zz/default.nix b/pkgs/tools/archivers/7zz/default.nix index 63e603353409..8d23b3a5c3c3 100644 --- a/pkgs/tools/archivers/7zz/default.nix +++ b/pkgs/tools/archivers/7zz/default.nix @@ -1,47 +1,48 @@ -{ lib, stdenv, fetchurl, autoPatchelfHook }: +{ stdenv, lib, fetchurl, p7zip }: -let platform = if stdenv.isi686 then "x86" - else if stdenv.isx86_64 then "x64" - else if stdenv.isAarch32 then "arm" - else if stdenv.isAarch64 then "arm64" - else throw "Unsupported architecture"; - - url = "https://7-zip.org/a/7z2101-linux-${platform}.tar.xz"; - - hashes = { - x86 = "0k6vg85ld8i2pcv5sv3xbvf3swqh9qj8hf2jcpadssys3yyidqyj"; - x64 = "1yfanx98fizj8d2s87yxgsy30zydx7h5w9wf4wy3blgsp0vkbjb3"; - arm = "04iah9vijm86r8rbkhxig86fx3lpag4xi7i3vq7gfrlwkymclhm1"; - arm64 = "0a26ginpb22aydcyvffxpbi7lxh4sgs9gb6cj96qqx7cnf7bk2ri"; - }; - sha256 = hashes."${platform}"; - -in stdenv.mkDerivation { +# https://sourceforge.net/p/sevenzip/discussion/45797/thread/7fe6c21efa/ +stdenv.mkDerivation rec { pname = "7zz"; - version = "21.01"; + version = "21.04"; - src = fetchurl { inherit url sha256; }; - sourceRoot = "."; + src = fetchurl { + url = "https://7-zip.org/a/7z${lib.replaceStrings ["." ] [""] version}-src.7z"; + sha256 = "sha256-XmuEyIJAJQM0ZbgrW02lQ2rp4KFDBjLXKRaTfY+VCOg="; + }; - nativeBuildInputs = [ autoPatchelfHook ]; - buildInputs = [ stdenv.cc.cc.lib ]; + sourceRoot = "CPP/7zip/Bundles/Alone2"; - dontBuild = true; + # we need https://github.com/nidud/asmc/tree/master/source/asmc/linux in order + # to build with the optimized assembler but that doesn't support building with + # GCC: https://github.com/nidud/asmc/issues/8 + makefile = "../../cmpl_gcc.mak"; # "../../cmpl_gcc_x64.mak"; + + NIX_CFLAGS_COMPILE = [ "-Wno-error=maybe-uninitialized" ]; + + nativeBuildInputs = [ p7zip ]; + + enableParallelBuilding = true; installPhase = '' runHook preInstall - install -D -t $out/bin 7zz + + install -Dm555 -t $out/bin b/g/7zz + install -Dm444 -t $out/share/doc/${pname} ../../../../DOC/*.txt + runHook postInstall ''; + doInstallCheck = true; + + installCheckPhase = '' + $out/bin/7zz --help | grep ${version} + ''; + meta = with lib; { description = "Command line archiver utility"; - homepage = "https://www.7-zip.org"; - - # source not released yet. will be under LGPL 2.1+ with RAR exception - license = licenses.unfree; - - platforms = [ "i686-linux" "x86_64-linux" "aarch64-linux" "armv7l-linux" ]; - maintainers = with maintainers; [ anna328p ]; + homepage = "https://7zip.org"; + license = licenses.lgpl21Plus; + maintainers = with maintainers; [ anna328p peterhoeg ]; + platforms = platforms.linux; }; } diff --git a/pkgs/tools/archivers/unar/default.nix b/pkgs/tools/archivers/unar/default.nix index f3f7b32e1192..5ce51fb0134e 100644 --- a/pkgs/tools/archivers/unar/default.nix +++ b/pkgs/tools/archivers/unar/default.nix @@ -1,4 +1,17 @@ -{ lib, stdenv, fetchFromGitHub, installShellFiles, gnustep, bzip2, zlib, icu, openssl, wavpack }: +{ lib +, stdenv +, fetchFromGitHub +, installShellFiles +, gnustep +, bzip2 +, zlib +, icu +, openssl +, wavpack +, xcbuildHook +, Foundation +, AppKit +}: stdenv.mkDerivation rec { pname = "unar"; @@ -12,35 +25,54 @@ stdenv.mkDerivation rec { sha256 = "0p846q1l66k3rnd512sncp26zpv411b8ahi145sghfcsz9w8abc4"; }; - postPatch = '' - for f in Makefile.linux ../UniversalDetector/Makefile.linux ; do - substituteInPlace $f \ - --replace "= gcc" "=${stdenv.cc.targetPrefix}cc" \ - --replace "= g++" "=${stdenv.cc.targetPrefix}c++" \ - --replace "-DGNU_RUNTIME=1" "" \ - --replace "-fgnu-runtime" "-fobjc-nonfragile-abi" - done + postPatch = + if stdenv.isDarwin then '' + substituteInPlace "./XADMaster.xcodeproj/project.pbxproj" \ + --replace "libstdc++.6.dylib" "libc++.1.dylib" + '' else '' + for f in Makefile.linux ../UniversalDetector/Makefile.linux ; do + substituteInPlace $f \ + --replace "= gcc" "=${stdenv.cc.targetPrefix}cc" \ + --replace "= g++" "=${stdenv.cc.targetPrefix}c++" \ + --replace "-DGNU_RUNTIME=1" "" \ + --replace "-fgnu-runtime" "-fobjc-nonfragile-abi" + done - # we need to build inside this directory as well, so we have to make it writeable - chmod +w ../UniversalDetector -R - ''; + # we need to build inside this directory as well, so we have to make it writeable + chmod +w ../UniversalDetector -R + ''; - buildInputs = [ gnustep.base bzip2 icu openssl wavpack zlib ]; + buildInputs = [ bzip2 icu openssl wavpack zlib ] ++ + lib.optionals stdenv.isLinux [ gnustep.base ] ++ + lib.optionals stdenv.isDarwin [ Foundation AppKit ]; - nativeBuildInputs = [ gnustep.make installShellFiles ]; + nativeBuildInputs = [ installShellFiles ] ++ + lib.optionals stdenv.isLinux [ gnustep.make ] ++ + lib.optionals stdenv.isDarwin [ xcbuildHook ]; + + xcbuildFlags = lib.optionals stdenv.isDarwin [ + "-target unar" + "-target lsar" + "-configuration Release" + "MACOSX_DEPLOYMENT_TARGET=10.12" + # Fix "ld: file not found: /nix/store/*-clang-7.1.0/lib/arc/libarclite_macosx." error + # Disabling ARC may leak memory, however since this program is generally not used for + # long periods of time, it shouldn't be an issue + "CLANG_LINK_OBJC_RUNTIME=NO" + ]; + + makefile = lib.optionalString (!stdenv.isDarwin) "Makefile.linux"; enableParallelBuilding = true; dontConfigure = true; - makefile = "Makefile.linux"; - sourceRoot = "./source/XADMaster"; installPhase = '' runHook preInstall - install -Dm555 -t $out/bin lsar unar + install -Dm555 -t $out/bin ${lib.optionalString stdenv.isDarwin "Products/Release/"}{lsar,unar} for f in lsar unar; do installManPage ./Extra/$f.? installShellCompletion --bash --name $f ./Extra/$f.bash_completion @@ -60,7 +92,7 @@ stdenv.mkDerivation rec { ADF, DMS, LZX, PowerPacker, LBR, Squeeze, Crunch, and other old formats. ''; license = licenses.lgpl21Plus; - maintainers = with maintainers; [ peterhoeg ]; - platforms = platforms.linux; + maintainers = with maintainers; [ peterhoeg thiagokokada ]; + platforms = platforms.unix; }; } diff --git a/pkgs/tools/archivers/unrar-wrapper/default.nix b/pkgs/tools/archivers/unrar-wrapper/default.nix new file mode 100644 index 000000000000..7452969cbdb4 --- /dev/null +++ b/pkgs/tools/archivers/unrar-wrapper/default.nix @@ -0,0 +1,36 @@ +{ lib, buildPythonApplication, fetchFromGitHub, unar }: + +buildPythonApplication rec { + pname = "unrar-wrapper"; + version = "1.0.0"; + + src = fetchFromGitHub { + owner = "openSUSE"; + repo = "unrar_wrapper"; + rev = "unrar_wrapper-${version}"; + sha256 = "sha256-HjrUif8MrbtLjRQMAPZ/Y2o43rGSDj0HHY4fZQfKz5w="; + }; + + makeWrapperArgs = [ + "--prefix" "PATH" ":" "${lib.makeBinPath [ unar ]}" + ]; + + postFixup = '' + ln -s $out/bin/unrar_wrapper $out/bin/unrar + rm -rf $out/nix-support/propagated-build-inputs + ''; + + setupHook = ./setup-hook.sh; + + meta = with lib; { + homepage = "https://github.com/openSUSE/unrar_wrapper"; + description = "Backwards compatibility between unar and unrar"; + longDescription = '' + unrar_wrapper is a wrapper python script that transforms the basic UnRAR commands + to unar and lsar calls in order to provide a backwards compatibility. + ''; + license = licenses.gpl3Only; + platforms = platforms.unix; + maintainers = with maintainers; [ artturin ]; + }; +} diff --git a/pkgs/tools/archivers/unrar-wrapper/setup-hook.sh b/pkgs/tools/archivers/unrar-wrapper/setup-hook.sh new file mode 100644 index 000000000000..41d6a5cd217b --- /dev/null +++ b/pkgs/tools/archivers/unrar-wrapper/setup-hook.sh @@ -0,0 +1,5 @@ +unpackCmdHooks+=(_tryUnrar) +_tryUnrar() { + if ! [[ "$curSrc" =~ \.rar$ ]]; then return 1; fi + unrar x "$curSrc" >/dev/null +} diff --git a/pkgs/tools/audio/abcmidi/default.nix b/pkgs/tools/audio/abcmidi/default.nix index 136da49491b1..f10b79d2ab00 100644 --- a/pkgs/tools/audio/abcmidi/default.nix +++ b/pkgs/tools/audio/abcmidi/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "abcMIDI"; - version = "2021.10.11"; + version = "2021.10.15"; src = fetchzip { url = "https://ifdo.ca/~seymour/runabc/${pname}-${version}.zip"; - sha256 = "sha256-2M6nCJD1ovW8Wzw+ucii5PjeNTOiTletor7MPCMPl38="; + sha256 = "sha256-OEkSgT3Rg0ZcTCTeOd2+GlopzhI19spOLkH3nDDCWo8="; }; meta = with lib; { diff --git a/pkgs/tools/audio/botamusique/default.nix b/pkgs/tools/audio/botamusique/default.nix index 36bd13433386..d13bbd13c922 100644 --- a/pkgs/tools/audio/botamusique/default.nix +++ b/pkgs/tools/audio/botamusique/default.nix @@ -9,6 +9,7 @@ # For the update script , coreutils +, curl , nix-prefetch-git , jq , nodePackages @@ -41,7 +42,7 @@ let in stdenv.mkDerivation rec { pname = "botamusique"; - version = "unstable-${lib.substring 0 10 srcJson.date}"; + version = srcJson.version; inherit src; @@ -67,21 +68,21 @@ stdenv.mkDerivation rec { ''; nativeBuildInputs = [ - python3Packages.wrapPython - nodejs makeWrapper + nodejs + python3Packages.wrapPython ]; pythonPath = with python3Packages; [ - pymumble - packaging - magic - requests - youtube-dl flask + magic mutagen + packaging pillow + pymumble pyradios + requests + yt-dlp ]; buildPhase = '' @@ -118,9 +119,17 @@ stdenv.mkDerivation rec { ''; passthru.updateScript = pkgs.writeShellScript "botamusique-updater" '' - export PATH=${lib.makeBinPath [ coreutils nix-prefetch-git jq nodePackages.node2nix ]} + export PATH=${lib.makeBinPath [ coreutils curl nix-prefetch-git jq nodePackages.node2nix ]} + set -ex - nix-prefetch-git https://github.com/azlux/botamusique > ${toString ./src.json} + OWNER=azlux + REPO=botamusique + VERSION=$(curl https://api.github.com/repos/$OWNER/$REPO/releases/latest | jq -r '.tag_name') + + nix-prefetch-git --rev "$VERSION" --url https://github.com/$OWNER/$REPO | \ + jq > ${toString ./src.json } \ + --arg version "$VERSION" \ + '.version |= $version' path=$(jq '.path' -r < ${toString ./src.json}) tmp=$(mktemp -d) @@ -129,7 +138,7 @@ stdenv.mkDerivation rec { # botamusique doesn't have a version in its package.json # But that's needed for node2nix jq < "$path"/web/package.json > "$tmp/package.json" \ - --arg version "0.0.0" \ + --arg version "$VERSION" \ '.version |= $version' node2nix \ diff --git a/pkgs/tools/audio/botamusique/node-packages.nix b/pkgs/tools/audio/botamusique/node-packages.nix index 89c7d8d98036..afff50cb922b 100644 --- a/pkgs/tools/audio/botamusique/node-packages.nix +++ b/pkgs/tools/audio/botamusique/node-packages.nix @@ -4526,8 +4526,8 @@ let args = { name = "botamusique"; packageName = "botamusique"; - version = "0.0.0"; - src = ../../../../../../../../../tmp/tmp.IOzfGq3zuo; + version = "7.2.2"; + src = ../../../../../../../../../tmp/tmp.axdirie3HR; dependencies = [ sources."@babel/code-frame-7.10.4" sources."@babel/compat-data-7.12.7" diff --git a/pkgs/tools/audio/botamusique/src.json b/pkgs/tools/audio/botamusique/src.json index ab5c4819ecbe..22a9c01bce73 100644 --- a/pkgs/tools/audio/botamusique/src.json +++ b/pkgs/tools/audio/botamusique/src.json @@ -1,11 +1,12 @@ { "url": "https://github.com/azlux/botamusique", - "rev": "3733353170e1d24b5f3ce2a21643c27ca2a39835", - "date": "2021-09-01T12:19:37+02:00", - "path": "/nix/store/07vl4lhi6dshh4n7pcyrxvy9m028rrbr-botamusique", - "sha256": "0cggan70zymbh9iwggq9a04zkky86k9cncprxb9nnr35gp4l4992", + "rev": "9b9b4e40ce7b077ebfa3b9be08d32025d1e43bc3", + "date": "2021-10-27T02:29:59+02:00", + "path": "/nix/store/9gxn2bw0757yrmx0xhhwq642lixyy88x-botamusique", + "sha256": "07n6nyi84ddqp2x8xrds7q83yfqapl5qhkcprzjsmvxhv4a3ar8q", "fetchLFS": false, "fetchSubmodules": false, "deepClone": false, - "leaveDotGit": false + "leaveDotGit": false, + "version": "7.2.2" } diff --git a/pkgs/tools/audio/stt/default.nix b/pkgs/tools/audio/stt/default.nix index 7834f87a0517..c8fff7ddbb4a 100644 --- a/pkgs/tools/audio/stt/default.nix +++ b/pkgs/tools/audio/stt/default.nix @@ -25,7 +25,7 @@ stdenv.mkDerivation rec { ''; meta = with lib; { - homepage = https://github.com/coqui-ai/STT; + homepage = "https://github.com/coqui-ai/STT"; description = "Deep learning toolkit for Speech-to-Text, battle-tested in research and production"; license = licenses.mpl20; platforms = [ "x86_64-linux" ]; diff --git a/pkgs/tools/backup/autorestic/default.nix b/pkgs/tools/backup/autorestic/default.nix index ab299db1c675..164c609299d7 100644 --- a/pkgs/tools/backup/autorestic/default.nix +++ b/pkgs/tools/backup/autorestic/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "autorestic"; - version = "1.2.0"; + version = "1.3.0"; src = fetchFromGitHub { owner = "cupcakearmy"; repo = pname; rev = "v${version}"; - sha256 = "yQgSJ0SQNWPMyrYn8rep+1b549HP8sOERh+kOiAK3+c="; + sha256 = "sha256-kd4nhfqKbJM7w1Prqiy+UBaa2SmZDgeSZzZTXTZ30yA="; }; - vendorSha256 = "7648gAguqeqLKFS9xRcx20wpSLb+ykZ7rOqR5PKe71o="; + vendorSha256 = "sha256-eKsPdmPJXiCwvb2A28tNxF4xStry3iA6aLb+XYFJYSg="; nativeBuildInputs = [ installShellFiles ]; diff --git a/pkgs/tools/backup/gamerbackup/default.nix b/pkgs/tools/backup/gamerbackup/default.nix index 37bff91100df..dcdaafb4e54f 100644 --- a/pkgs/tools/backup/gamerbackup/default.nix +++ b/pkgs/tools/backup/gamerbackup/default.nix @@ -2,16 +2,16 @@ buildGoModule { pname = "gb-backup"; - version = "unstable-2021-08-16"; + version = "unstable-2021-10-27"; src = fetchFromGitHub { owner = "leijurv"; repo = "gb"; - rev = "fa996208d06766bf523686fbe5831628130d80f7"; - sha256 = "1vggl8d69sf4z2lmixfndwwd6l9gi0fkkrxga7v4w7a7yr96b1vp"; + rev = "61383d445af7b035fb8e1df0cacc424340dd16df"; + sha256 = "sha256-YRrD2gW+gzxD2JwadCbF/SBSsHeeGPsa8kKZHHAytVo="; }; - vendorSha256 = "0m2aa6p04b4fs7zncar1mlykc94pp527phv71cdsbx58jgsm1jnx"; + vendorSha256 = "sha256-H3Zf4VNJVX9C3GTeqU4YhNqCIQz1R55MfhrygDgJTxc="; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/tools/backup/kopia/default.nix b/pkgs/tools/backup/kopia/default.nix index 512ec7b52590..0774d6e5483a 100644 --- a/pkgs/tools/backup/kopia/default.nix +++ b/pkgs/tools/backup/kopia/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "kopia"; - version = "0.9.4"; + version = "0.9.5"; src = fetchFromGitHub { owner = pname; repo = pname; rev = "v${version}"; - sha256 = "sha256-+zfkFusLoYITIStk3ZobeuN3MFeY5T6pbiUEc4IT1UA="; + sha256 = "sha256-1HCpUfK8y4BaBluThpRVeXTPgMUym6R+WXCO+2pRNjc="; }; - vendorSha256 = "sha256-v81YkImg8GdI5locfsU4dg2JyO7XB24mfHRIZ+k8QBA="; + vendorSha256 = "sha256-tYu1T4oHkvj4QOS/e/6N9IjMlxrGKosQ78DVgAyh6/Q="; doCheck = false; diff --git a/pkgs/tools/backup/partclone/default.nix b/pkgs/tools/backup/partclone/default.nix index 06c207471577..4686fcd3e647 100644 --- a/pkgs/tools/backup/partclone/default.nix +++ b/pkgs/tools/backup/partclone/default.nix @@ -4,13 +4,13 @@ stdenv.mkDerivation rec { pname = "partclone"; - version = "0.3.17"; + version = "0.3.18"; src = fetchFromGitHub { owner = "Thomas-Tsai"; repo = "partclone"; rev = version; - sha256 = "sha256-tMdBo26JvHxbVI/Y2KDMejH+YT4IVx2H/y36u9ss0C8="; + sha256 = "sha256-cSxQJmuKm54AzIQbsEZhv/I8hfpaGroszdWqbRb3Ht4="; }; nativeBuildInputs = [ autoreconfHook pkg-config ]; diff --git a/pkgs/tools/cd-dvd/brasero/default.nix b/pkgs/tools/cd-dvd/brasero/default.nix index ea720f4f3eb2..2107d4ed0824 100644 --- a/pkgs/tools/cd-dvd/brasero/default.nix +++ b/pkgs/tools/cd-dvd/brasero/default.nix @@ -12,7 +12,7 @@ in stdenv.mkDerivation rec { pname = "brasero"; src = fetchurl { - url = "http://download.gnome.org/sources/brasero/${major}/${pname}-${version}.tar.xz"; + url = "mirror://gnome/sources/brasero/${major}/${pname}-${version}.tar.xz"; sha256 = "0h90y674j26rvjahb8cc0w79zx477rb6zaqcj26wzvq8kmpic8k8"; }; diff --git a/pkgs/tools/cd-dvd/vobsub2srt/default.nix b/pkgs/tools/cd-dvd/vobsub2srt/default.nix index 54df481cd676..624bcc08b41f 100644 --- a/pkgs/tools/cd-dvd/vobsub2srt/default.nix +++ b/pkgs/tools/cd-dvd/vobsub2srt/default.nix @@ -1,8 +1,8 @@ { lib, stdenv, fetchgit, cmake, libtiff, pkg-config, tesseract }: stdenv.mkDerivation rec { - pname = "vobsub2srt-git"; - version = "20140817-${builtins.substring 0 7 rev}"; + pname = "vobsub2srt"; + version = "unstable-2014-08-17"; rev = "a6abbd61127a6392d420bbbebdf7612608c943c2"; src = fetchgit { diff --git a/pkgs/tools/compression/crabz/default.nix b/pkgs/tools/compression/crabz/default.nix index ab5cc94b43a1..5eafb3f56145 100644 --- a/pkgs/tools/compression/crabz/default.nix +++ b/pkgs/tools/compression/crabz/default.nix @@ -29,6 +29,15 @@ rustPlatform.buildRustPackage rec { Security ]; + # link System as a dylib instead of a framework on macos + postPatch = lib.optionalString stdenv.isDarwin '' + core_affinity=../$(stripHash $cargoDeps)/core_affinity + oldHash=$(sha256sum $core_affinity/src/lib.rs | cut -d " " -f 1) + substituteInPlace $core_affinity/src/lib.rs --replace framework dylib + substituteInPlace $core_affinity/.cargo-checksum.json \ + --replace $oldHash $(sha256sum $core_affinity/src/lib.rs | cut -d " " -f 1) + ''; + meta = with lib; { description = "A cross platform, fast, compression and decompression tool"; homepage = "https://github.com/sstadick/crabz"; diff --git a/pkgs/tools/compression/flips/default.nix b/pkgs/tools/compression/flips/default.nix index b4a79aac2127..024ff5fbe9f1 100644 --- a/pkgs/tools/compression/flips/default.nix +++ b/pkgs/tools/compression/flips/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation { pname = "flips"; - version = "unstable-2021-05-18"; + version = "unstable-2021-10-28"; src = fetchFromGitHub { owner = "Alcaro"; repo = "Flips"; - rev = "3476e5e46fc6f10df475f0cad1714358ba04c756"; - sha256 = "0s13qrmqfmlb2vy0smpgw39vjkl8vzsmpzk52jnc9r7b4hisii39"; + rev = "3a8733e74c9bdbb6b89da2b45913a0be3d0e1866"; + sha256 = "1jik580mz2spik5mgh60h93ryaj5x8dffncnr1lwija0v803xld7"; }; nativeBuildInputs = [ pkg-config wrapGAppsHook ]; diff --git a/pkgs/tools/compression/ouch/default.nix b/pkgs/tools/compression/ouch/default.nix index fc2e2642cf8d..c9ffaef4b76c 100644 --- a/pkgs/tools/compression/ouch/default.nix +++ b/pkgs/tools/compression/ouch/default.nix @@ -1,4 +1,14 @@ -{ lib, rustPlatform, fetchFromGitHub, help2man, installShellFiles }: +{ lib +, rustPlatform +, fetchFromGitHub +, help2man +, installShellFiles +, pkg-config +, bzip2 +, xz +, zlib +, zstd +}: rustPlatform.buildRustPackage rec { pname = "ouch"; @@ -13,7 +23,13 @@ rustPlatform.buildRustPackage rec { cargoSha256 = "sha256-jEprWtIl5LihD9fOMYHGGlk0+h4woUlwUWNfSkd2t10="; - nativeBuildInputs = [ help2man installShellFiles ]; + nativeBuildInputs = [ help2man installShellFiles pkg-config ]; + + buildInputs = [ bzip2 xz zlib zstd ]; + + cargoBuildFlags = [ "--features" "zstd/pkg-config" ]; + + cargoTestFlags = cargoBuildFlags; postInstall = '' help2man $out/bin/ouch > ouch.1 diff --git a/pkgs/tools/filesystems/bcachefs-tools/default.nix b/pkgs/tools/filesystems/bcachefs-tools/default.nix index be7a42e19e9d..b8742075dd84 100644 --- a/pkgs/tools/filesystems/bcachefs-tools/default.nix +++ b/pkgs/tools/filesystems/bcachefs-tools/default.nix @@ -22,23 +22,24 @@ stdenv.mkDerivation { pname = "bcachefs-tools"; - version = "unstable-2021-07-08"; + version = "unstable-2021-11-06"; src = fetchFromGitHub { owner = "koverstreet"; repo = "bcachefs-tools"; - rev = "050d5f7bcf08bd02f5077a1c5559f352fa449e1e"; - sha256 = "15bl9ni0ckmvs5d7hi6v26z690rrmkb7dx00skn6gwq87ffz3imw"; + rev = "5b84952401146fec9a181a40877352f7faf9ee7b"; + sha256 = "09zs2h3vzqn163v4i9lrvgy9gcjlw24lld7715j3kyyxnc5vav32"; }; postPatch = '' + patchShebangs . substituteInPlace Makefile \ --replace "pytest-3" "pytest --verbose" \ --replace "INITRAMFS_DIR=/etc/initramfs-tools" \ "INITRAMFS_DIR=${placeholder "out"}/etc/initramfs-tools" ''; - nativeBuildInputs = [ pkg-config docutils ]; + nativeBuildInputs = [ pkg-config docutils python3Packages.python ]; buildInputs = [ libuuid libscrypt libsodium keyutils liburcu zlib libaio @@ -64,6 +65,6 @@ stdenv.mkDerivation { homepage = "https://bcachefs.org/"; license = licenses.gpl2; maintainers = with maintainers; [ davidak chiiruno ]; - platforms = [ "x86_64-linux" ]; # does not build on aarch64, see https://github.com/koverstreet/bcachefs-tools/issues/39 + platforms = platforms.linux; }; } diff --git a/pkgs/tools/filesystems/ceph/default.nix b/pkgs/tools/filesystems/ceph/default.nix index 0f28ad144169..04774e851b3e 100644 --- a/pkgs/tools/filesystems/ceph/default.nix +++ b/pkgs/tools/filesystems/ceph/default.nix @@ -239,12 +239,14 @@ in rec { }; ceph-client = runCommand "ceph-client-${version}" { - meta = getMeta "Tools needed to mount Ceph's RADOS Block Devices"; + meta = getMeta "Tools needed to mount Ceph's RADOS Block Devices/Cephfs"; } '' - mkdir -p $out/{bin,etc,${sitePackages},share/bash-completion/completions} + mkdir -p $out/{bin,sbin,etc,${sitePackages},share/bash-completion/completions} cp -r ${ceph}/bin/{ceph,.ceph-wrapped,rados,rbd,rbdmap} $out/bin cp -r ${ceph}/bin/ceph-{authtool,conf,dencoder,rbdnamer,syn} $out/bin cp -r ${ceph}/bin/rbd-replay* $out/bin + cp -r ${ceph}/sbin/mount.ceph $out/sbin + cp -r ${ceph}/sbin/mount.fuse.ceph $out/sbin cp -r ${ceph}/${sitePackages} $out/${sitePackages} cp -r ${ceph}/etc/bash_completion.d $out/share/bash-completion/completions # wrapPythonPrograms modifies .ceph-wrapped, so lets just update its paths diff --git a/pkgs/tools/filesystems/dduper/default.nix b/pkgs/tools/filesystems/dduper/default.nix index 5d91e8d0dcc6..e7eecbf766ee 100644 --- a/pkgs/tools/filesystems/dduper/default.nix +++ b/pkgs/tools/filesystems/dduper/default.nix @@ -5,8 +5,8 @@ let patches = [ (fetchpatch { name = "0001-Print-csum-for-a-given-file-on-stdout.patch"; - url = "https://raw.githubusercontent.com/Lakshmipathi/dduper/8fab08e0f1901bf54411d25f1767b48c978074cb/patch/btrfs-progs-v5.9/0001-Print-csum-for-a-given-file-on-stdout.patch"; - sha256 = "1li9lslrap70ibad8sij3bgpxn5lqs0j10l60bmy3c36y866q3g1"; + url = "https://raw.githubusercontent.com/Lakshmipathi/dduper/f45d04854a40cb52ae0e6736916d5955cb68b8ee/patch/btrfs-progs-v5.12.1/0001-Print-csum-for-a-given-file-on-stdout.patch"; + sha256 = "0c7dd44q2ww6k9nk5dh6m0f0wbd8x84vb2m61fk6a44nsv2fwz1x"; }) ]; }); diff --git a/pkgs/tools/filesystems/lfs/default.nix b/pkgs/tools/filesystems/lfs/default.nix index d1988183bf19..65e446fc42f9 100644 --- a/pkgs/tools/filesystems/lfs/default.nix +++ b/pkgs/tools/filesystems/lfs/default.nix @@ -5,16 +5,16 @@ rustPlatform.buildRustPackage rec { pname = "lfs"; - version = "1.1.0"; + version = "1.2.1"; src = fetchFromGitHub { owner = "Canop"; repo = pname; rev = "v${version}"; - sha256 = "gez5q1niIhzWJpsEkbVRuQFILo3tTO8aJq7ewZArJ5M="; + sha256 = "sha256-Cf9W0LnlvMm0XZe6lvx8hQejcwyfxBC6VKltAAfRD5I="; }; - cargoSha256 = "2U1xDG4bTimtmjwZ1z9ErlaOcBNJdRcHlEWVaiGg01M="; + cargoSha256 = "sha256-skP9VJuRMCyA06YjGbyNIt/DljP3fQQOIQDy6k10zGI="; meta = with lib; { description = "Get information on your mounted disks"; diff --git a/pkgs/tools/filesystems/lizardfs/default.nix b/pkgs/tools/filesystems/lizardfs/default.nix index a9e0cd12d9d4..aa2260cb374d 100644 --- a/pkgs/tools/filesystems/lizardfs/default.nix +++ b/pkgs/tools/filesystems/lizardfs/default.nix @@ -17,7 +17,6 @@ , judy , pam , spdlog -, fmt , systemdMinimal , zlib # optional }: @@ -37,7 +36,7 @@ stdenv.mkDerivation rec { buildInputs = [ db fuse asciidoc libxml2 libxslt docbook_xml_dtd_412 docbook_xsl - zlib boost judy pam spdlog fmt python3 systemdMinimal + zlib boost judy pam spdlog python3 systemdMinimal ]; meta = with lib; { diff --git a/pkgs/tools/filesystems/nilfs-utils/default.nix b/pkgs/tools/filesystems/nilfs-utils/default.nix index 0639c6a6f21b..ec227c95573f 100644 --- a/pkgs/tools/filesystems/nilfs-utils/default.nix +++ b/pkgs/tools/filesystems/nilfs-utils/default.nix @@ -1,46 +1,23 @@ -{ lib, stdenv, fetchurl, fetchpatch, libuuid, libselinux }: -let - sourceInfo = rec { - version = "2.2.7"; - url = "http://nilfs.sourceforge.net/download/nilfs-utils-${version}.tar.bz2"; - sha256 = "01f09bvjk2crx65pxmxiw362wkkl3v2v144dfn3i7bk5gz253xic"; - baseName = "nilfs-utils"; - name = "${baseName}-${version}"; - }; -in -stdenv.mkDerivation { - src = fetchurl { - url = sourceInfo.url; - sha256 = sourceInfo.sha256; +{ lib, stdenv, fetchFromGitHub, fetchpatch, autoreconfHook, libuuid, libselinux }: + +stdenv.mkDerivation rec { + pname = "nilfs-utils"; + version = "2.2.8"; + + src = fetchFromGitHub { + owner = "nilfs-dev"; + repo = pname; + rev = "v${version}"; + sha256 = "094mw7dsyppyiyzfdnf3f5hlkrh4bidk1kvvpn1kcvw5vn2xpfk7"; }; - inherit (sourceInfo) name version; - buildInputs = [libuuid libselinux]; + nativeBuildInputs = [ autoreconfHook ]; - preConfigure = '' - sed -e '/sysconfdir=\/etc/d; ' -i configure - sed -e "s@sbindir=/sbin@sbindir=$out/sbin@" -i configure - sed -e 's@/sbin/@'"$out"'/sbin/@' -i ./lib/cleaner*.c - ''; + buildInputs = [ libuuid libselinux ]; - patches = [ - # Fix w/musl - (fetchpatch { - url = "https://github.com/nilfs-dev/nilfs-utils/commit/115fe4b976858c487cf83065f513d8626089579a.patch"; - sha256 = "0h89jz9l5d4rqj647ljbnv451l4ncqpsvzj0v70mn5391hfwsjlv"; - }) - (fetchpatch { - url = "https://github.com/nilfs-dev/nilfs-utils/commit/51b32c614be9e98c32de7f531ee600ca0740946f.patch"; - sha256 = "1ycq83c6jjy74aif47v075k5y2szzwhq6mbcrpd1z4b4i1x6yhpn"; - }) - ]; - - configureFlags = [ - "--with-libmount" - ] ++ lib.optionals (stdenv.hostPlatform != stdenv.buildPlatform) [ - # AC_FUNC_MALLOC is broken on cross builds. - "ac_cv_func_malloc_0_nonnull=yes" - "ac_cv_func_realloc_0_nonnull=yes" + installFlags = [ + "sysconfdir=${placeholder "out"}/etc" + "root_sbindir=${placeholder "out"}/sbin" ]; # FIXME: https://github.com/NixOS/patchelf/pull/98 is in, but stdenv @@ -49,7 +26,7 @@ stdenv.mkDerivation { # To make sure patchelf doesn't mistakenly keep the reference via # build directory postInstall = '' - find . -name .libs | xargs rm -rf + find . -name .libs -exec rm -rf -- {} + ''; meta = with lib; { diff --git a/pkgs/tools/filesystems/nixpart/0.4/cryptsetup.nix b/pkgs/tools/filesystems/nixpart/0.4/cryptsetup.nix index 6e372b75a7d7..7b2e65d474f7 100644 --- a/pkgs/tools/filesystems/nixpart/0.4/cryptsetup.nix +++ b/pkgs/tools/filesystems/nixpart/0.4/cryptsetup.nix @@ -1,14 +1,24 @@ -{ lib, stdenv, fetchurl, fetchpatch, lvm2, libgcrypt, libuuid, pkg-config, popt -, enablePython ? true, python ? null +{ lib +, stdenv +, fetchurl +, fetchpatch +, lvm2 +, libgcrypt +, libuuid +, pkg-config +, popt +, enablePython ? true +, python ? null }: assert enablePython -> python != null; stdenv.mkDerivation rec { - name = "cryptsetup-1.6.3"; + pname = "cryptsetup"; + version = "1.6.3"; src = fetchurl { - url = "http://cryptsetup.googlecode.com/files/${name}.tar.bz2"; + url = "http://cryptsetup.googlecode.com/files/cryptsetup-${version}.tar.bz2"; sha256 = "1n1qk5chyjspbiianrdb55fhb4wl0vfyqz2br05vfb24v4qlgbx2"; }; @@ -22,11 +32,11 @@ stdenv.mkDerivation rec { ]; configureFlags = [ "--enable-cryptsetup-reencrypt" ] - ++ lib.optional enablePython "--enable-python"; + ++ lib.optional enablePython "--enable-python"; nativeBuildInputs = [ pkg-config ]; buildInputs = [ lvm2 libgcrypt libuuid popt ] - ++ lib.optional enablePython python; + ++ lib.optional enablePython python; meta = with lib; { homepage = "http://code.google.com/p/cryptsetup/"; diff --git a/pkgs/tools/filesystems/nixpart/0.4/dmraid.nix b/pkgs/tools/filesystems/nixpart/0.4/dmraid.nix index c5d8eebc47ca..899af827508a 100644 --- a/pkgs/tools/filesystems/nixpart/0.4/dmraid.nix +++ b/pkgs/tools/filesystems/nixpart/0.4/dmraid.nix @@ -1,10 +1,11 @@ { lib, stdenv, fetchurl, lvm2 }: stdenv.mkDerivation rec { - name = "dmraid-1.0.0.rc15"; + pname = "dmraid"; + version = "1.0.0.rc15"; src = fetchurl { - url = "https://people.redhat.com/~heinzm/sw/dmraid/src/old/${name}.tar.bz2"; + url = "https://people.redhat.com/~heinzm/sw/dmraid/src/old/dmraid-${version}.tar.bz2"; sha256 = "01bcaq0sc329ghgj7f182xws7jgjpdc41bvris8fsiprnxc7511h"; }; diff --git a/pkgs/tools/filesystems/nixpart/0.4/multipath-tools.nix b/pkgs/tools/filesystems/nixpart/0.4/multipath-tools.nix index 976a3ce2567a..e6d304c2cd37 100644 --- a/pkgs/tools/filesystems/nixpart/0.4/multipath-tools.nix +++ b/pkgs/tools/filesystems/nixpart/0.4/multipath-tools.nix @@ -3,10 +3,11 @@ { lib, stdenv, fetchurl, fetchpatch, lvm2, libaio, gzip, readline, systemd }: stdenv.mkDerivation rec { - name = "multipath-tools-0.4.9"; + pname = "multipath-tools"; + version = "0.4.9"; src = fetchurl { - url = "http://christophe.varoqui.free.fr/multipath-tools/${name}.tar.bz2"; + url = "http://christophe.varoqui.free.fr/multipath-tools/multipath-tools-${version}.tar.bz2"; sha256 = "04n7kazp1zrlqfza32phmqla0xkcq4zwn176qff5ida4a60whi4d"; }; diff --git a/pkgs/tools/filesystems/nixpart/0.4/parted.nix b/pkgs/tools/filesystems/nixpart/0.4/parted.nix index 2891f990afb0..e3dd662c18a9 100644 --- a/pkgs/tools/filesystems/nixpart/0.4/parted.nix +++ b/pkgs/tools/filesystems/nixpart/0.4/parted.nix @@ -1,13 +1,22 @@ -{ lib,stdenv, fetchurl, fetchpatch, lvm2, libuuid, gettext, readline -, util-linux, check +{ lib +, stdenv +, fetchurl +, fetchpatch +, lvm2 +, libuuid +, gettext +, readline +, util-linux +, check , enableStatic ? stdenv.hostPlatform.isStatic }: stdenv.mkDerivation rec { - name = "parted-3.1"; + pname = "parted"; + version = "3.1"; src = fetchurl { - url = "mirror://gnu/parted/${name}.tar.xz"; + url = "mirror://gnu/parted/parted-${version}.tar.xz"; sha256 = "05fa4m1bky9d13hqv91jlnngzlyn7y4rnnyq6d86w0dg3vww372y"; }; @@ -26,9 +35,9 @@ stdenv.mkDerivation rec { ++ lib.optional (lvm2 != null) lvm2; configureFlags = - (if (readline != null) - then [ "--with-readline" ] - else [ "--without-readline" ]) + (if (readline != null) + then [ "--with-readline" ] + else [ "--without-readline" ]) ++ lib.optional (lvm2 == null) "--disable-device-mapper" ++ lib.optional enableStatic "--enable-static"; diff --git a/pkgs/tools/filesystems/sshfs-fuse/common.nix b/pkgs/tools/filesystems/sshfs-fuse/common.nix index f85faa712dd4..187efa1604e0 100644 --- a/pkgs/tools/filesystems/sshfs-fuse/common.nix +++ b/pkgs/tools/filesystems/sshfs-fuse/common.nix @@ -56,6 +56,7 @@ in stdenv.mkDerivation rec { longDescription = macfuse-stubs.warning; homepage = "https://github.com/libfuse/sshfs"; license = licenses.gpl2Plus; + mainProgram = "sshfs"; maintainers = with maintainers; [ primeos ]; }; } diff --git a/pkgs/tools/games/gamemode/preload-nix-workaround.patch b/pkgs/tools/games/gamemode/preload-nix-workaround.patch index 06989ff984ab..9c8db37f5d91 100644 --- a/pkgs/tools/games/gamemode/preload-nix-workaround.patch +++ b/pkgs/tools/games/gamemode/preload-nix-workaround.patch @@ -6,7 +6,7 @@ index 573b3e4..6f2799e 100755 # ld will find the right path to load the library, including for 32-bit apps. LD_PRELOAD="${GAMEMODEAUTO_NAME}${LD_PRELOAD:+:$LD_PRELOAD}" -+LD_LIBRARY_PATH="@libraryPath@${LD_LIBRARY_PATH:+:$LD_LIBRARY_PATH}" ++LD_LIBRARY_PATH="@libraryPath@${LD_LIBRARY_PATH:+:}$LD_LIBRARY_PATH" -exec env LD_PRELOAD="${LD_PRELOAD}" $GAMEMODERUNEXEC "$@" +exec env LD_PRELOAD="${LD_PRELOAD}" LD_LIBRARY_PATH="${LD_LIBRARY_PATH}" $GAMEMODERUNEXEC "$@" diff --git a/pkgs/tools/graphics/goverlay/default.nix b/pkgs/tools/graphics/goverlay/default.nix index daddc4947df5..b8cd6df4751f 100644 --- a/pkgs/tools/graphics/goverlay/default.nix +++ b/pkgs/tools/graphics/goverlay/default.nix @@ -17,6 +17,7 @@ , polkit , procps , systemd +, util-linux , vulkan-tools , which }: @@ -35,13 +36,13 @@ let ''; in stdenv.mkDerivation rec { pname = "goverlay"; - version = "0.6.3"; + version = "0.6.4"; src = fetchFromGitHub { owner = "benjamimgois"; repo = pname; rev = version; - hash = "sha256-ZksQse0xWAtH+U6EjcGWT2BOG5dfSnm6XvZLLE5ynHs="; + sha256 = "sha256-xuv7u2lLQAB0Zmu7UHGXP/sJwcb8vHDf9hFL+pF+818="; }; outputs = [ "out" "man" ]; @@ -91,6 +92,7 @@ in stdenv.mkDerivation rec { polkit procps systemd + util-linux.bin vulkan-tools which ]}" diff --git a/pkgs/tools/graphics/goverlay/find-xdg-data-files.patch b/pkgs/tools/graphics/goverlay/find-xdg-data-files.patch index e29507980adb..96970cd769a1 100644 --- a/pkgs/tools/graphics/goverlay/find-xdg-data-files.patch +++ b/pkgs/tools/graphics/goverlay/find-xdg-data-files.patch @@ -1,8 +1,8 @@ diff --git a/overlayunit.pas b/overlayunit.pas -index a56cea7..9a4f547 100644 +index 8c2276d..a62e60a 100644 --- a/overlayunit.pas +++ b/overlayunit.pas -@@ -4880,7 +4880,7 @@ begin +@@ -4913,7 +4913,7 @@ begin //Determine Mangohud dependency status //locate MangoHud and store result in tmp folder @@ -11,7 +11,7 @@ index a56cea7..9a4f547 100644 // Assign Text file dependency_mangohud to variable mangohudVAR AssignFile(mangohudVAR, '/tmp/goverlay/dependency_mangohud'); -@@ -4889,7 +4889,7 @@ begin +@@ -4922,7 +4922,7 @@ begin CloseFile(mangohudVAR); // Read String and store value on mangohuddependencyVALUE based on result @@ -20,7 +20,7 @@ index a56cea7..9a4f547 100644 mangohuddependencyVALUE := 1 else mangohuddependencyVALUE := 0; -@@ -4898,7 +4898,7 @@ begin +@@ -4931,7 +4931,7 @@ begin //Determine vkBasalt dependency staus //locate vkBasalt and store result in tmp folder @@ -29,7 +29,7 @@ index a56cea7..9a4f547 100644 // Assign Text file dependency_mangohud to variable mangohudVAR AssignFile(vkbasaltVAR, '/tmp/goverlay/dependency_vkbasalt'); -@@ -4907,7 +4907,7 @@ begin +@@ -4940,7 +4940,7 @@ begin CloseFile(vkbasaltVAR); // Read String and store value on vkbasaltdependencyVALUE based on result diff --git a/pkgs/tools/graphics/ldgallery/default.nix b/pkgs/tools/graphics/ldgallery/default.nix index 84d179374ae8..1b620656ce5a 100644 --- a/pkgs/tools/graphics/ldgallery/default.nix +++ b/pkgs/tools/graphics/ldgallery/default.nix @@ -1,7 +1,7 @@ { lib, pkgs, makeWrapper, haskellPackages, haskell, pandoc, imagemagick, CoreServices }: with lib; -with haskell.lib; +with haskell.lib.compose; let ldgallery-viewer = pkgs.callPackage ./viewer { inherit CoreServices; }; @@ -12,7 +12,7 @@ in # making sure that the versions of the compiler and viewer parts are in sync assert ldgallery-compiler.version == versions.majorMinor ldgallery-viewer.version; -justStaticExecutables (overrideCabal ldgallery-compiler (oldAttrs: { +justStaticExecutables (overrideCabal (oldAttrs: { pname = "ldgallery"; # bundled viewer + compiler buildTools = (oldAttrs.buildTools or []) ++ [ makeWrapper pandoc ]; @@ -50,4 +50,4 @@ justStaticExecutables (overrideCabal ldgallery-compiler (oldAttrs: { # other package metadata (maintainer, description, license, ...) # are inherited from the compiler package -})) +}) ldgallery-compiler) diff --git a/pkgs/tools/graphics/perceptualdiff/default.nix b/pkgs/tools/graphics/perceptualdiff/default.nix index 454352986edf..f2281bc5d35f 100644 --- a/pkgs/tools/graphics/perceptualdiff/default.nix +++ b/pkgs/tools/graphics/perceptualdiff/default.nix @@ -19,6 +19,7 @@ stdenv.mkDerivation rec { homepage = "https://github.com/myint/perceptualdiff"; license = licenses.gpl2Plus; maintainers = with maintainers; [ uri-canva ]; - platforms = platforms.x86; + platforms = platforms.unix; + broken = stdenv.hostPlatform.system == "aarch64-darwin"; }; } diff --git a/pkgs/tools/graphics/pngout/default.nix b/pkgs/tools/graphics/pngout/default.nix index c2de8a4fb2ae..b6f19d2390e1 100644 --- a/pkgs/tools/graphics/pngout/default.nix +++ b/pkgs/tools/graphics/pngout/default.nix @@ -1,34 +1,49 @@ -{lib, stdenv, fetchurl}: +{ lib +, stdenv +, fetchurl +, unzip +}: let - folder = if stdenv.hostPlatform.system == "i686-linux" then "i686" - else if stdenv.hostPlatform.system == "x86_64-linux" then "x86_64" - else throw "Unsupported system: ${stdenv.hostPlatform.system}"; + platforms = { + aarch64-linux = { folder = "aarch64"; ld-linux = "ld-linux-aarch64.so.1"; }; + armv7l-linux = { folder = "armv7"; ld-linux = "ld-linux-armhf.so.3"; }; + i686-linux = { folder = "i686"; ld-linux = "ld-linux.so.2"; }; + x86_64-darwin = { folder = "."; }; + x86_64-linux = { folder = "amd64"; ld-linux = "ld-linux-x86-64.so.2"; }; + }; + platform = platforms."${stdenv.hostPlatform.system}" + or (throw "Unsupported system: ${stdenv.hostPlatform.system}"); + download = if stdenv.isDarwin + then { extension = "macos.zip"; hash = "sha256-MnL6lH7q/BrACG4fFJNfnvoh0JClVeaJIlX+XIj2aG4="; } + else { extension = "linux.tar.gz"; hash = "sha256-rDi7pvDeKQM96GZTjDr6ZDQTGbaVu+OI77xf2egw6Sg="; }; in stdenv.mkDerivation rec { pname = "pngout"; - version = "20150319"; + version = "20200115"; src = fetchurl { - url = "http://static.jonof.id.au/dl/kenutils/pngout-${version}-linux.tar.gz"; - sha256 = "0iwv941hgs2g7ljpx48fxs24a70m2whrwarkrb77jkfcd309x2h7"; + inherit (download) hash; + url = "http://static.jonof.id.au/dl/kenutils/pngout-${version}-${download.extension}"; }; + nativeBuildInputs = lib.optionals stdenv.isDarwin [ unzip ]; + + # pngout is code-signed on Darwin, so don’t alter the binary to avoid breaking the signature. + dontFixup = stdenv.isDarwin; + installPhase = '' mkdir -p $out/bin - cp ${folder}/pngout $out/bin - - ${if stdenv.hostPlatform.system == "i686-linux" then '' - patchelf --set-interpreter ${stdenv.glibc.out}/lib/ld-linux.so.2 $out/bin/pngout - '' else if stdenv.hostPlatform.system == "x86_64-linux" then '' - patchelf --set-interpreter ${stdenv.glibc.out}/lib/ld-linux-x86-64.so.2 $out/bin/pngout - '' else ""} + cp ${platform.folder}/pngout $out/bin + '' + lib.optionalString stdenv.isLinux '' + patchelf --set-interpreter ${stdenv.glibc.out}/lib/${platform.ld-linux} $out/bin/pngout ''; meta = { description = "A tool that aggressively optimizes the sizes of PNG images"; - license = lib.licenses.unfree; + license = lib.licenses.unfreeRedistributable; homepage = "http://advsys.net/ken/utils.htm"; + platforms = lib.attrNames platforms; maintainers = [ lib.maintainers.sander ]; }; } diff --git a/pkgs/tools/graphics/pngquant/default.nix b/pkgs/tools/graphics/pngquant/default.nix index b2b0691718a9..bb0ef8581250 100644 --- a/pkgs/tools/graphics/pngquant/default.nix +++ b/pkgs/tools/graphics/pngquant/default.nix @@ -14,6 +14,8 @@ stdenv.mkDerivation rec { preConfigure = "patchShebangs ."; + configureFlags = lib.optionals (!stdenv.isi686 && !stdenv.isx86_64) [ "--disable-sse" ]; + nativeBuildInputs = [ pkg-config ]; buildInputs = [ libpng zlib lcms2 ]; diff --git a/pkgs/tools/graphics/qrcode/default.nix b/pkgs/tools/graphics/qrcode/default.nix index 93a620b57792..2067d1a97e2e 100644 --- a/pkgs/tools/graphics/qrcode/default.nix +++ b/pkgs/tools/graphics/qrcode/default.nix @@ -1,13 +1,13 @@ { lib, stdenv, fetchFromGitHub }: stdenv.mkDerivation { - pname = "qrcode-git"; - version = "20160804"; + pname = "qrcode"; + version = "unstable-2016-08-04"; src = fetchFromGitHub { - owner = "qsantos"; - repo = "qrcode"; - rev = "ad0fdb4aafd0d56b903f110f697abaeb27deee73"; + owner = "qsantos"; + repo = "qrcode"; + rev = "ad0fdb4aafd0d56b903f110f697abaeb27deee73"; sha256 = "0v81745nx5gny2g05946k8j553j18a29ikmlyh6c3syq6c15k8cf"; }; diff --git a/pkgs/tools/graphics/wallutils/default.nix b/pkgs/tools/graphics/wallutils/default.nix index 7425056cfae3..d7c37bb2742b 100644 --- a/pkgs/tools/graphics/wallutils/default.nix +++ b/pkgs/tools/graphics/wallutils/default.nix @@ -1,16 +1,17 @@ { buildGoPackage, fetchFromGitHub, lib -, wayland, libX11, xbitmaps, libXcursor, libXmu, libXpm +, pkg-config +, wayland, libX11, xbitmaps, libXcursor, libXmu, libXpm, libheif }: buildGoPackage rec { pname = "wallutils"; - version = "5.9.0"; + version = "5.10.0"; src = fetchFromGitHub { owner = "xyproto"; repo = "wallutils"; rev = version; - sha256 = "17xw1311xpmi5c8mwa9yvn4pxa7g4n09j84lvy61gmxc5m128fwy"; + sha256 = "1phlkpy8kg4ai2xmachpbbxvl8fga9hqqbad2a2121yl60709l1k"; }; goPackagePath = "github.com/xyproto/wallutils"; @@ -22,13 +23,14 @@ buildGoPackage rec { sed -iE 's/VersionString = "[0-9].[0-9].[0-9]"/VersionString = "${version}"/' wallutils.go ''; - buildInputs = [ wayland libX11 xbitmaps libXcursor libXmu libXpm ]; + nativeBuildInputs = [ pkg-config ]; + buildInputs = [ wayland libX11 xbitmaps libXcursor libXmu libXpm libheif ]; meta = with lib; { description = "Utilities for handling monitors, resolutions, and (timed) wallpapers"; inherit (src.meta) homepage; license = licenses.mit; - maintainers = with maintainers; [ primeos ]; + maintainers = with maintainers; [ ]; platforms = platforms.linux; }; } diff --git a/pkgs/tools/inputmethods/emote/default.nix b/pkgs/tools/inputmethods/emote/default.nix index d65831d5202e..79831d7ef1ec 100644 --- a/pkgs/tools/inputmethods/emote/default.nix +++ b/pkgs/tools/inputmethods/emote/default.nix @@ -2,18 +2,21 @@ python3Packages.buildPythonApplication rec { pname = "emote"; - version = "2.0.0"; + version = "3.0.3"; src = fetchFromGitHub { owner = "tom-james-watson"; repo = "Emote"; rev = "v${version}"; - sha256 = "kYXFD6VBnuEZ0ZMsF6ZmN4V0JN83puxRILpNlllVsKQ="; + sha256 = "mqCSl+EGbnL9AfzZT3aa/Y5Rsx433ZmI31BmK3wkaJk="; }; postPatch = '' - substituteInPlace setup.py --replace "pygobject==3.36.0" "pygobject" + substituteInPlace setup.py \ + --replace "pygobject==3.36.0" "pygobject" \ + --replace "manimpango==0.3.0" "manimpango" substituteInPlace emote/config.py --replace 'os.environ.get("SNAP")' "'$out/share/emote'" + substituteInPlace emote/picker.py --replace 'os.environ.get("SNAP_VERSION", "dev build")' "'$version'" substituteInPlace snap/gui/emote.desktop --replace "Icon=\''${SNAP}/usr/share/icons/emote.svg" "Icon=emote.svg" ''; @@ -27,6 +30,7 @@ python3Packages.buildPythonApplication rec { ]; propagatedBuildInputs = [ + python3Packages.manimpango python3Packages.pygobject3 gtk3 xdotool @@ -36,7 +40,7 @@ python3Packages.buildPythonApplication rec { postInstall = '' install -D snap/gui/emote.desktop $out/share/applications/emote.desktop install -D snap/gui/emote.svg $out/share/pixmaps/emote.svg - install -D -t $out/share/emote/static static/{emojis.json,logo.svg,style.css} + install -D -t $out/share/emote/static static/{NotoColorEmoji.ttf,emojis.csv,logo.svg,style.css} ''; dontWrapGApps = true; diff --git a/pkgs/tools/inputmethods/fcitx/fcitx-configtool.nix b/pkgs/tools/inputmethods/fcitx/fcitx-configtool.nix index 3d34dcbac175..ccbec8209e9a 100644 --- a/pkgs/tools/inputmethods/fcitx/fcitx-configtool.nix +++ b/pkgs/tools/inputmethods/fcitx/fcitx-configtool.nix @@ -1,17 +1,18 @@ { lib, stdenv, fetchurl, makeWrapper, pkg-config, cmake, fcitx, gtk3, isocodes, gnome }: stdenv.mkDerivation rec { - name = "fcitx-configtool-0.4.10"; + pname = "fcitx-configtool"; + version = "0.4.10"; meta = with lib; { description = "GTK-based config tool for Fcitx"; - license = licenses.gpl2; - platforms = platforms.linux; + license = licenses.gpl2; + platforms = platforms.linux; maintainers = with maintainers; [ cdepillabout ]; }; src = fetchurl { - url = "https://download.fcitx-im.org/fcitx-configtool/${name}.tar.xz"; + url = "https://download.fcitx-im.org/fcitx-configtool/fcitx-configtool-${version}.tar.xz"; sha256 = "1yyi9jhkwn49lx9a47k1zbvwgazv4y4z72gnqgzdpgdzfrlrgi5w"; }; diff --git a/pkgs/tools/inputmethods/skk/skk-dicts/default.nix b/pkgs/tools/inputmethods/skk/skk-dicts/default.nix index d165f404f6cb..385806e444c0 100644 --- a/pkgs/tools/inputmethods/skk/skk-dicts/default.nix +++ b/pkgs/tools/inputmethods/skk/skk-dicts/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchurl, libiconv, skktools }: +{ lib, stdenv, fetchurl, buildPackages, libiconv, skktools }: let # kana to kanji @@ -33,6 +33,8 @@ stdenv.mkDerivation { srcs = [ small medium large edict assoc ]; nativeBuildInputs = [ skktools ] ++ lib.optional stdenv.isDarwin libiconv; + strictDeps = true; + dontUnpack = true; installPhase = '' @@ -47,28 +49,30 @@ stdenv.mkDerivation { for src in $srcs; do dst=$out/share/$(dictname $src) echo ";;; -*- coding: utf-8 -*-" > $dst # libskk requires this on the first line - iconv -f EUC-JP -t UTF-8 $src |\ - ${skktools}/bin/skkdic-expr2 >> $dst + ${lib.getBin buildPackages.stdenv.cc.libc}/bin/iconv \ + -f EUC-JP -t UTF-8 $src | skkdic-expr2 >> $dst done # combine .L .edict and .assoc for convenience dst=$out/share/SKK-JISYO.combined echo ";;; -*- coding: utf-8 -*-" > $dst - ${skktools}/bin/skkdic-expr2 \ + skkdic-expr2 \ $out/share/$(dictname ${large}) + \ $out/share/$(dictname ${edict}) + \ $out/share/$(dictname ${assoc}) >> $dst ''; - meta = { + enableParallelBuilding = true; + + meta = with lib; { description = "A collection of standard SKK dictionaries"; longDescription = '' This package provides a collection of standard kana-to-kanji dictionaries for the SKK Japanese input method. ''; homepage = "https://github.com/skk-dev/dict"; - license = lib.licenses.gpl2Plus; - maintainers = with lib.maintainers; [ yuriaisaka ]; - platforms = with lib.platforms; linux ++ darwin; + license = licenses.gpl2Plus; + maintainers = with maintainers; [ yuriaisaka ]; + platforms = platforms.all; }; } diff --git a/pkgs/tools/misc/apkeep/default.nix b/pkgs/tools/misc/apkeep/default.nix new file mode 100644 index 000000000000..41e6e32b8310 --- /dev/null +++ b/pkgs/tools/misc/apkeep/default.nix @@ -0,0 +1,23 @@ +{ lib, fetchCrate, rustPlatform, openssl, pkg-config }: + +rustPlatform.buildRustPackage rec { + pname = "apkeep"; + version = "0.6.0"; + + src = fetchCrate { + inherit pname version; + sha256 = "sha256-RTzYvDkmE0kgl4FSOSjDuQ5G1E0ugFU41zVAMMroofM="; + }; + + cargoSha256 = "sha256-YFs2AOMGp0WNrceK14AnigZdJl+UsQdUchpxaI7HSXw="; + + nativeBuildInputs = [ pkg-config ]; + buildInputs = [ openssl ]; + + meta = with lib; { + description = "A command-line tool for downloading APK files from various sources"; + homepage = "https://github.com/EFForg/apkeep"; + license = licenses.mit; + maintainers = with maintainers; [ jyooru ]; + }; +} diff --git a/pkgs/tools/misc/bdf2psf/default.nix b/pkgs/tools/misc/bdf2psf/default.nix index 72f142105b71..06b8aa4d9609 100644 --- a/pkgs/tools/misc/bdf2psf/default.nix +++ b/pkgs/tools/misc/bdf2psf/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "bdf2psf"; - version = "1.205"; + version = "1.207"; src = fetchurl { url = "mirror://debian/pool/main/c/console-setup/bdf2psf_${version}_all.deb"; - sha256 = "sha256-elFmsqtndo4ReR4IoyhC56k0PMqy5QrUxOGUQLGeu0I="; + sha256 = "0k9dv4s44k1khrhr6acsb2sqr5iq3d03ync82nzan5j7mckzs76v"; }; nativeBuildInputs = [ dpkg ]; diff --git a/pkgs/tools/misc/beats/default.nix b/pkgs/tools/misc/beats/default.nix index 3e471c76fdfe..9b387a3939d5 100644 --- a/pkgs/tools/misc/beats/default.nix +++ b/pkgs/tools/misc/beats/default.nix @@ -11,7 +11,7 @@ stdenv.mkDerivation rec { sha256 = "1rdvsqrjpily74y8vwch711401585xckb4p41cfwrmj6vf44jhif"; }; - makeFlags = [ "PREFIX=$(out)" ]; + makeFlags = [ "PREFIX=$(out)" "CC=cc" ]; meta = with lib; { homepage = "https://github.com/j0hax/beats"; diff --git a/pkgs/tools/misc/chezmoi/default.nix b/pkgs/tools/misc/chezmoi/default.nix index ba8fb3507695..d9ac3a894c67 100644 --- a/pkgs/tools/misc/chezmoi/default.nix +++ b/pkgs/tools/misc/chezmoi/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "chezmoi"; - version = "2.7.3"; + version = "2.7.4"; src = fetchFromGitHub { owner = "twpayne"; repo = "chezmoi"; rev = "v${version}"; - sha256 = "sha256-xn9DSbAqfSK7CokxVRrHuOO62oSXKGR0/HZYadLLd74="; + sha256 = "sha256-RX9Hgjl/i/FWXHFp+yYWQEYDiOQijU+eiBnREu4K1Mg="; }; - vendorSha256 = "sha256-e+LsFlF83OGbhajaGGyWARv7O6dI6ZKm3yhDqrgmMpk="; + vendorSha256 = "sha256-tz3Vcw/p7BKcgc3EsLsSPOKhwqN5kysOcmER7OoKQ+w="; doCheck = false; diff --git a/pkgs/tools/misc/cht.sh/default.nix b/pkgs/tools/misc/cht.sh/default.nix index d9fcd8b29bc2..bff4b5310bd1 100644 --- a/pkgs/tools/misc/cht.sh/default.nix +++ b/pkgs/tools/misc/cht.sh/default.nix @@ -10,15 +10,15 @@ stdenv.mkDerivation { pname = "cht.sh"; - version = "unstable-2021-10-20"; + version = "unstable-2021-11-13"; nativeBuildInputs = [ makeWrapper ]; src = fetchFromGitHub { owner = "chubin"; repo = "cheat.sh"; - rev = "5a79c76c9b8ef337cffb9537a3d8a47c9ffc8b04"; - sha256 = "zDkYp2YPEur26qEwG8DQQzv8/T288HG/9mzzkN4SEtU="; + rev = "4bb7b14843c302695b7d47d4d814f38998da1a68"; + sha256 = "NbB+UGydk0zSkqTPYw5KOHR0mv1UHH2pXLYdMRdG8UE="; }; # Fix ".cht.sh-wrapped" in the help message diff --git a/pkgs/tools/misc/ckb-next/default.nix b/pkgs/tools/misc/ckb-next/default.nix index 81e51bbbf20f..2566ee0a2e5f 100644 --- a/pkgs/tools/misc/ckb-next/default.nix +++ b/pkgs/tools/misc/ckb-next/default.nix @@ -1,5 +1,7 @@ -{ lib, mkDerivation, fetchFromGitHub, substituteAll, udev -, pkg-config, qtbase, cmake, zlib, kmod, libXdmcp, qttools, qtx11extras, libdbusmenu }: +{ lib, mkDerivation, fetchFromGitHub, substituteAll, udev, stdenv +, pkg-config, qtbase, cmake, zlib, kmod, libXdmcp, qttools, qtx11extras, libdbusmenu +, withPulseaudio ? stdenv.isLinux, libpulseaudio +}: mkDerivation rec { version = "0.4.4"; @@ -20,7 +22,7 @@ mkDerivation rec { qttools qtx11extras libdbusmenu - ]; + ] ++ lib.optional withPulseaudio libpulseaudio; nativeBuildInputs = [ pkg-config diff --git a/pkgs/tools/misc/clipnotify/default.nix b/pkgs/tools/misc/clipnotify/default.nix index 5cb3a5114d8a..51a67f6983f8 100644 --- a/pkgs/tools/misc/clipnotify/default.nix +++ b/pkgs/tools/misc/clipnotify/default.nix @@ -1,12 +1,12 @@ { libX11, libXfixes, lib, stdenv, fetchFromGitHub }: stdenv.mkDerivation rec { pname = "clipnotify"; - version = "git-2018-02-20"; + version = "unstable-2018-02-20"; src = fetchFromGitHub { owner = "cdown"; - repo = "clipnotify"; - rev = "9cb223fbe494c5b71678a9eae704c21a97e3bddd"; + repo = "clipnotify"; + rev = "9cb223fbe494c5b71678a9eae704c21a97e3bddd"; sha256 = "1x9avjq0fgw0svcbw6b6873qnsqxbacls9sipmcv86xia4bxh8dn"; }; diff --git a/pkgs/tools/misc/colorpicker/default.nix b/pkgs/tools/misc/colorpicker/default.nix index 07d15469383d..475041b4f682 100644 --- a/pkgs/tools/misc/colorpicker/default.nix +++ b/pkgs/tools/misc/colorpicker/default.nix @@ -2,12 +2,12 @@ stdenv.mkDerivation rec { pname = "colorpicker"; - version = "git-2018-01-14"; + version = "unstable-2018-01-14"; src = fetchFromGitHub { owner = "Ancurio"; - repo = "colorpicker"; - rev = "287676947e6e3b5b0cee784aeb1638cf22f0ce17"; + repo = "colorpicker"; + rev = "287676947e6e3b5b0cee784aeb1638cf22f0ce17"; sha256 = "1kj1dpb79llrfpszraaz6r7ci114zqi5rmqxwsvq2dnnpjxyi29r"; }; diff --git a/pkgs/tools/misc/coreutils/default.nix b/pkgs/tools/misc/coreutils/default.nix index 0b8d61756bde..58421a50a19a 100644 --- a/pkgs/tools/misc/coreutils/default.nix +++ b/pkgs/tools/misc/coreutils/default.nix @@ -33,10 +33,7 @@ stdenv.mkDerivation (rec { ./fix-chmod-exit-code.patch # Workaround for https://debbugs.gnu.org/cgi/bugreport.cgi?bug=51433 ./disable-seek-hole.patch - ] ++ optional stdenv.hostPlatform.isCygwin ./coreutils-8.23-4.cygwin.patch - # fix gnulib tests on 32-bit ARM. Included on coreutils master. - # https://lists.gnu.org/r/bug-gnulib/2020-08/msg00225.html - ++ optional stdenv.hostPlatform.isAarch32 ./fix-gnulib-tests-arm.patch; + ] ++ optional stdenv.hostPlatform.isCygwin ./coreutils-8.23-4.cygwin.patch; postPatch = '' # The test tends to fail on btrfs,f2fs and maybe other unusual filesystems. diff --git a/pkgs/tools/misc/coreutils/fix-gnulib-tests-arm.patch b/pkgs/tools/misc/coreutils/fix-gnulib-tests-arm.patch deleted file mode 100644 index 39bd29f8439e..000000000000 --- a/pkgs/tools/misc/coreutils/fix-gnulib-tests-arm.patch +++ /dev/null @@ -1,45 +0,0 @@ ->From 175e0bc72808d564074c4adcc72aeadb74adfcc6 Mon Sep 17 00:00:00 2001 -From: Paul Eggert <eggert@cs.ucla.edu> -Date: Thu, 27 Aug 2020 17:52:58 -0700 -Subject: [PATCH] perror, strerror_r: remove unportable tests - -Problem reported by Florian Weimer in: -https://lists.gnu.org/r/bug-gnulib/2020-08/msg00220.html -* tests/test-perror2.c (main): -* tests/test-strerror_r.c (main): Omit unportable tests. ---- - tests/test-perror2.c | 3 --- - tests/test-strerror_r.c | 3 --- - 2 files changed, 6 deletions(-) - -diff --git a/gnulib-tests/test-perror2.c b/gnulib-tests/test-perror2.c -index 1d14eda7b..c6214dd25 100644 ---- a/gnulib-tests/test-perror2.c -+++ b/gnulib-tests/test-perror2.c -@@ -79,9 +79,6 @@ main (void) - errno = -5; - perror (""); - ASSERT (!ferror (stderr)); -- ASSERT (msg1 == msg2 || msg1 == msg4 || STREQ (msg1, str1)); -- ASSERT (msg2 == msg4 || STREQ (msg2, str2)); -- ASSERT (msg3 == msg4 || STREQ (msg3, str3)); - ASSERT (STREQ (msg4, str4)); - - free (str1); -diff --git a/gnulib-tests/test-strerror_r.c b/gnulib-tests/test-strerror_r.c -index b11d6fd9f..c1dbcf837 100644 ---- a/gnulib-tests/test-strerror_r.c -+++ b/gnulib-tests/test-strerror_r.c -@@ -165,9 +165,6 @@ main (void) - - strerror_r (EACCES, buf, sizeof buf); - strerror_r (-5, buf, sizeof buf); -- ASSERT (msg1 == msg2 || msg1 == msg4 || STREQ (msg1, str1)); -- ASSERT (msg2 == msg4 || STREQ (msg2, str2)); -- ASSERT (msg3 == msg4 || STREQ (msg3, str3)); - ASSERT (STREQ (msg4, str4)); - - free (str1); --- -2.17.1 - diff --git a/pkgs/tools/misc/diffoscope/default.nix b/pkgs/tools/misc/diffoscope/default.nix index e07d03cddba2..b1390fefb33c 100644 --- a/pkgs/tools/misc/diffoscope/default.nix +++ b/pkgs/tools/misc/diffoscope/default.nix @@ -9,11 +9,11 @@ # Note: when upgrading this package, please run the list-missing-tools.sh script as described below! python3Packages.buildPythonApplication rec { pname = "diffoscope"; - version = "188"; + version = "190"; src = fetchurl { url = "https://diffoscope.org/archive/diffoscope-${version}.tar.bz2"; - sha256 = "sha256-kB3EnmnQYqal4cdzwArH+QdHe5wnUOnbjbQAz52g1Us="; + sha256 = "sha256-iZ9OJESNlGgsYTO9jbzEX5sCz8Rrhs7cecJEy7j4U+c="; }; outputs = [ "out" "man" ]; diff --git a/pkgs/tools/misc/ethtool/default.nix b/pkgs/tools/misc/ethtool/default.nix index e4ca354e4a3f..65797f65fe6d 100644 --- a/pkgs/tools/misc/ethtool/default.nix +++ b/pkgs/tools/misc/ethtool/default.nix @@ -7,11 +7,11 @@ stdenv.mkDerivation rec { pname = "ethtool"; - version = "5.14"; + version = "5.15"; src = fetchurl { url = "mirror://kernel/software/network/${pname}/${pname}-${version}.tar.xz"; - sha256 = "sha256-uxPbkZFcrNekkrZbZd8Hpn5Ll03b6vdiBbGUWiPSdoY="; + sha256 = "sha256-aG/WEQOJ1JwqEg8Aw81d/kPeutqOAh5CcNdLvkUqEW0="; }; nativeBuildInputs = [ diff --git a/pkgs/tools/misc/flashrom/default.nix b/pkgs/tools/misc/flashrom/default.nix index 03465d593ff4..4c227cbe3f96 100644 --- a/pkgs/tools/misc/flashrom/default.nix +++ b/pkgs/tools/misc/flashrom/default.nix @@ -1,4 +1,5 @@ { fetchurl +, fetchpatch , gcc9Stdenv , installShellFiles , lib @@ -20,11 +21,18 @@ gcc9Stdenv.mkDerivation rec { }; nativeBuildInputs = [ pkg-config installShellFiles ]; - buildInputs = [ libftdi1 libusb1 ] - # https://github.com/flashrom/flashrom/issues/125 - ++ lib.optional (!gcc9Stdenv.isAarch64) pciutils + buildInputs = [ libftdi1 libusb1 pciutils ] ++ lib.optional jlinkSupport libjaylink; + patches = [ + # remove when updating from 1.2 + (fetchpatch { + name = "fix-aarch64-build.patch"; + url = "https://github.com/flashrom/flashrom/commit/da6b3b70cb852dd8e9f9e21aef95fa83e7f7ab0d.patch"; + sha256 = "sha256-fXYDXgT/ik+qtxxFEyJ7/axtycbwLkEg0UD+hzsYEwg="; + }) + ]; + postPatch = '' substituteInPlace util/z60_flashrom.rules \ --replace "plugdev" "flashrom" diff --git a/pkgs/tools/misc/fortune/default.nix b/pkgs/tools/misc/fortune/default.nix index 350e28428d4b..6f77c54e30b4 100644 --- a/pkgs/tools/misc/fortune/default.nix +++ b/pkgs/tools/misc/fortune/default.nix @@ -37,6 +37,7 @@ stdenv.mkDerivation rec { '') ]; meta = with lib; { + mainProgram = "fortune"; description = "A program that displays a pseudorandom message from a database of quotations"; license = licenses.bsdOriginal; platforms = platforms.unix; diff --git a/pkgs/tools/misc/fzf/default.nix b/pkgs/tools/misc/fzf/default.nix index e56a61338aaa..b82232a6b96d 100644 --- a/pkgs/tools/misc/fzf/default.nix +++ b/pkgs/tools/misc/fzf/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "fzf"; - version = "0.27.3"; + version = "0.28.0"; src = fetchFromGitHub { owner = "junegunn"; repo = pname; rev = version; - sha256 = "sha256-uVGU8tOHHJYBoWTwx9ilnOKo49R0QHdCABKfGoL7Dkk="; + sha256 = "sha256-28Lu/WYIJWdLmSKX6C3w6F5NXXynPVwmmdH8PcDwC+Y="; }; vendorSha256 = "sha256-omvCzM5kH3nAE57S33NV0OFRJmU+Ty7hhriaG/Dc0o0="; diff --git a/pkgs/tools/misc/gaphor/default.nix b/pkgs/tools/misc/gaphor/default.nix new file mode 100644 index 000000000000..6105b07c3450 --- /dev/null +++ b/pkgs/tools/misc/gaphor/default.nix @@ -0,0 +1,66 @@ +{ lib +, buildPythonApplication +, fetchPypi +, poetry-core +, gobject-introspection +, pango +, gtksourceview4 +, wrapGAppsHook +, makeDesktopItem +, copyDesktopItems +, gaphas +, generic +, pycairo +, pygobject3 +, python +, tinycss2 +}: + +buildPythonApplication rec { + pname = "gaphor"; + version = "2.6.5"; + + format = "pyproject"; + + src = fetchPypi { + inherit pname version; + sha256 = "sha256-IFsbWx5lblKsnEibVihM6ZPRoydXC+JM1gdZEUUTKxw="; + }; + + nativeBuildInputs = [ + poetry-core copyDesktopItems gobject-introspection wrapGAppsHook + ]; + + # Setting gobject-introspection on booth nativeBuildInputs and + # buildInputs because of #56943. This recognizes pango, avoiding + # a "ValueError: Namespace PangoCairo not available". + buildInputs = [ gobject-introspection gtksourceview4 pango ]; + + propagatedBuildInputs = [ + gaphas + generic + pycairo + pygobject3 + tinycss2 + ]; + + desktopItems = makeDesktopItem { + name = pname; + exec = "gaphor"; + icon = "gaphor"; + comment = meta.description; + desktopName = "Gaphor"; + }; + + postInstall = '' + install -Dm644 $out/${python.sitePackages}/gaphor/ui/icons/hicolor/scalable/apps/org.gaphor.Gaphor.svg $out/share/pixmaps/gaphor.svg + ''; + + meta = with lib; { + description = "Simple modeling tool written in Python"; + maintainers = with maintainers; [ wolfangaukang ]; + homepage = "https://github.com/gaphor/gaphor"; + license = licenses.asl20; + platforms = [ "x86_64-linux" ]; + }; +} diff --git a/pkgs/tools/misc/goreleaser/default.nix b/pkgs/tools/misc/goreleaser/default.nix index c2caab58af5e..5ff4a9e05e99 100644 --- a/pkgs/tools/misc/goreleaser/default.nix +++ b/pkgs/tools/misc/goreleaser/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "goreleaser"; - version = "0.183.0"; + version = "0.184.0"; src = fetchFromGitHub { owner = "goreleaser"; repo = pname; rev = "v${version}"; - sha256 = "sha256-bH6Crsyo1D2wBlQJK4P13Jc9x5ItaNOV1P7o16z8LS8="; + sha256 = "sha256-ujhYcihLJh52cURvQ7p1B4fZTDx8cq3WA4RfKetWEBo="; }; - vendorSha256 = "sha256-netkm/oqf7FQuuF0kjQjoopOQADPrVStIhMdEYx43FE="; + vendorSha256 = "sha256-J9lAkmLDowMmbwcHV2t9/7iVzkZRnF60/4PSRS8+4Sg="; ldflags = [ "-s" diff --git a/pkgs/tools/misc/graylog/plugins.nix b/pkgs/tools/misc/graylog/plugins.nix index 8df7f34bb234..45c4441ea2d6 100644 --- a/pkgs/tools/misc/graylog/plugins.nix +++ b/pkgs/tools/misc/graylog/plugins.nix @@ -107,7 +107,7 @@ in { cp ${pluginName}-${version}.jar $out/bin/${pluginName}-${version}.jar ''; meta = { - homepage = https://github.com/Graylog2/graylog-plugin-integrations; + homepage = "https://github.com/Graylog2/graylog-plugin-integrations"; description = "A collection of open source Graylog integrations that will be released together"; }; }; @@ -224,7 +224,7 @@ in { sha256 = "1hkaklwzcsvqq45b98chwqxqdgnnbj4dg68agsll13yq4zx37qpp"; }; meta = { - homepage = https://github.com/graylog-labs/graylog-plugin-snmp; + homepage = "https://github.com/graylog-labs/graylog-plugin-snmp"; description = "Graylog plugin to receive SNMP traps"; }; }; diff --git a/pkgs/tools/misc/hashit/default.nix b/pkgs/tools/misc/hashit/default.nix index e26a0abbde3a..b9bf5f0ae5f8 100644 --- a/pkgs/tools/misc/hashit/default.nix +++ b/pkgs/tools/misc/hashit/default.nix @@ -45,5 +45,6 @@ stdenv.mkDerivation rec { license = licenses.gpl2Plus; maintainers = teams.pantheon.members; platforms = platforms.linux; + mainProgram = "com.github.artemanufrij.hashit"; }; } diff --git a/pkgs/tools/misc/jdupes/default.nix b/pkgs/tools/misc/jdupes/default.nix index 2589b57821b8..3c08371414cd 100644 --- a/pkgs/tools/misc/jdupes/default.nix +++ b/pkgs/tools/misc/jdupes/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "jdupes"; - version = "1.20.0"; + version = "1.20.1"; src = fetchFromGitHub { owner = "jbruchon"; repo = "jdupes"; rev = "v${version}"; - sha256 = "sha256-G6ixqSIdDoM/OVlPfv2bI4MA/k0x3Jic/kFo5XEsN/M="; + sha256 = "sha256-qGYMLLksbC6bKbK+iRkZ2eSNU5J/wEvTfzT0IkKukvA="; # Unicode file names lead to different checksums on HFS+ vs. other # filesystems because of unicode normalisation. The testdir # directories have such files and will be removed. diff --git a/pkgs/tools/misc/keychain/default.nix b/pkgs/tools/misc/keychain/default.nix index 61abb3eee105..826c9d85579c 100644 --- a/pkgs/tools/misc/keychain/default.nix +++ b/pkgs/tools/misc/keychain/default.nix @@ -1,5 +1,18 @@ -{ lib, stdenv, fetchFromGitHub, makeWrapper, coreutils, openssh, gnupg -, perl, procps, gnugrep, gawk, findutils, gnused }: +{ lib +, stdenv +, fetchFromGitHub +, installShellFiles +, makeWrapper +, coreutils +, openssh +, gnupg +, perl +, procps +, gnugrep +, gawk +, findutils +, gnused +}: stdenv.mkDerivation rec { pname = "keychain"; @@ -12,33 +25,19 @@ stdenv.mkDerivation rec { sha256 = "1bkjlg0a2bbdjhwp37ci1rwikvrl4s3xlbf2jq2z4azc96dr83mj"; }; - nativeBuildInputs = [ makeWrapper ]; + nativeBuildInputs = [ installShellFiles makeWrapper ]; buildInputs = [ perl ]; installPhase = '' - mkdir -p $out/{bin,share/man/man1} + mkdir -p $out/bin cp keychain $out/bin/keychain - cp keychain.1 $out/share/man/man1 + installManPage keychain.1 wrapProgram $out/bin/keychain \ - --prefix PATH ":" "${coreutils}/bin" \ - --prefix PATH ":" "${openssh}/bin" \ - --prefix PATH ":" "${gnupg}/bin" \ - --prefix PATH ":" "${gnugrep}/bin" \ - --prefix PATH ":" "${gnused}/bin" \ - --prefix PATH ":" "${findutils}/bin" \ - --prefix PATH ":" "${gawk}/bin" \ - --prefix PATH ":" "${procps}/bin" + --prefix PATH ":" "${lib.makeBinPath [ coreutils findutils gawk gnupg gnugrep gnused openssh procps ]}" \ ''; - meta = { + meta = with lib; { description = "Keychain management tool"; - homepage = "https://www.funtoo.org/Keychain"; - license = lib.licenses.gpl2; - # other platforms are untested (AFAIK) - platforms = - with lib; - platforms.linux ++ platforms.darwin; - maintainers = with lib.maintainers; [ sigma ]; longDescription = '' Keychain helps you to manage SSH and GPG keys in a convenient and secure manner. It acts as a frontend to ssh-agent and ssh-add, but allows you @@ -51,5 +50,9 @@ stdenv.mkDerivation rec { for remote cron jobs to securely "hook in" to a long-running ssh-agent process, allowing your scripts to take advantage of key-based logins. ''; + homepage = "https://www.funtoo.org/Keychain"; + license = licenses.gpl2; + platforms = platforms.unix; + maintainers = with maintainers; [ sigma SuperSandro2000 ]; }; } diff --git a/pkgs/tools/misc/keymapviz/default.nix b/pkgs/tools/misc/keymapviz/default.nix new file mode 100644 index 000000000000..14c56d48dfc9 --- /dev/null +++ b/pkgs/tools/misc/keymapviz/default.nix @@ -0,0 +1,22 @@ +{ fetchFromGitHub, lib, python3 }: + +python3.pkgs.buildPythonApplication rec { + pname = "keymapviz"; + version = "1.9.0"; + + src = fetchFromGitHub { + owner = "yskoht"; + repo = pname; + rev = version; + sha256 = "sha256-lNpUH4BvlnHx0SDq5YSsHdcTeEnf6MH2WRUEsCWWHA0="; + }; + + propagatedBuildInputs = with python3.pkgs; [ regex ]; + + meta = with lib; { + description = "A qmk keymap.c visualizer"; + homepage = "https://github.com/yskoht/keymapviz"; + license = licenses.mit; + maintainers = with maintainers; [ legendofmiracles ]; + }; +} diff --git a/pkgs/tools/misc/lighthouse-steamvr/default.nix b/pkgs/tools/misc/lighthouse-steamvr/default.nix new file mode 100644 index 000000000000..ac3c6bcf1ad0 --- /dev/null +++ b/pkgs/tools/misc/lighthouse-steamvr/default.nix @@ -0,0 +1,27 @@ +{ fetchFromGitHub, lib, rustPlatform, pkg-config, dbus }: + +rustPlatform.buildRustPackage rec { + pname = "Lighthouse"; + version = "unstable-2021-03-28"; + + src = fetchFromGitHub { + owner = "ShayBox"; + repo = "Lighthouse"; + rev = "a090889077557fe92610ca503979b5cfc0724d61"; + sha256 = "0vfl4y61cdrah98x6xcnb3cyi8rwhlws8ps6vfdlmr3dv30mbnbb"; + }; + + cargoSha256 = "0aqd9ixszwq6qmj751gxx453gwbhwqi16m72bkbkj9s6nfyqihql"; + + nativeBuildInputs = [ pkg-config ]; + + buildInputs = [ dbus ]; + + meta = with lib; { + description = "VR Lighthouse power state management"; + homepage = "https://github.com/ShayBox/Lighthouse"; + license = licenses.mit; + maintainers = with maintainers; [ expipiplus1 ]; + }; +} + diff --git a/pkgs/tools/misc/livedl/default.nix b/pkgs/tools/misc/livedl/default.nix index b989fe27a659..ef298fbc6464 100644 --- a/pkgs/tools/misc/livedl/default.nix +++ b/pkgs/tools/misc/livedl/default.nix @@ -13,7 +13,7 @@ buildGoModule rec { sourceRoot = "source/src"; - vendorSha256 = sha256:g5Y1IH1U1zOOHygTzAJuBnUj+MyPe64KHTYikipt3TY=; + vendorSha256 = "g5Y1IH1U1zOOHygTzAJuBnUj+MyPe64KHTYikipt3TY="; meta = with lib; { description = "Command-line tool to download nicovideo.jp livestreams"; diff --git a/pkgs/tools/misc/logstash/7.x.nix b/pkgs/tools/misc/logstash/7.x.nix index c0c67b19b10a..1e69fbc976d9 100644 --- a/pkgs/tools/misc/logstash/7.x.nix +++ b/pkgs/tools/misc/logstash/7.x.nix @@ -17,17 +17,20 @@ let shas = if enableUnfree then { - x86_64-linux = "sha256-5qv4fbFpLf6aduD7wyxXQ6FsCeUqrszRisNBx44vbMY="; - x86_64-darwin = "sha256-7H+Xpo8qF1ZZMkR5n92PVplEN4JsBEYar91zHQhE+Lo="; + x86_64-linux = "0yjaki7gjffrz86hvqgn1gzhd9dc9llcj50g2x1sgpyn88zk0z0p"; + x86_64-darwin = "0dqm66c89w1nvmbwqzphlqmf7avrycgv1nwd5b0k1z168fj0c3zm"; + aarch64-linux = "11hjhyb48mjagmvqyxb780n57kr619h6p4adl2vs1zm97g9gslx8"; } else { - x86_64-linux = "sha256-jiV2yGPwPgZ5plo3ftImVDLSOsk/XBzFkeeALSObLhU="; - x86_64-darwin = "sha256-UYG+GGr23eAc2GgNX/mXaGU0WKMjiQMPpD1wUvAVz0A="; + x86_64-linux = "14b1649avjcalcsi0ffkgznq6d93qdk6m3j0i73mwfqka5d3dvy3"; + x86_64-darwin = "0ypgdfklr5rxvsnc3czh231pa1z2h70366j1c6q5g64b3xnxpphs"; + aarch64-linux = "01ainayr8fwwfix7dmxfhhmb23ji65dn4lbjwnj2w0pl0ym9h9w2"; }; this = stdenv.mkDerivation rec { version = elk7Version; pname = "logstash${optionalString (!enableUnfree) "-oss"}"; + src = fetchurl { url = "https://artifacts.elastic.co/downloads/logstash/${pname}-${version}-${plat}-${arch}.tar.gz"; sha256 = shas.${stdenv.hostPlatform.system} or (throw "Unknown architecture"); diff --git a/pkgs/tools/misc/lokalise2-cli/default.nix b/pkgs/tools/misc/lokalise2-cli/default.nix index 087a5ce7f9a3..85437e09efbb 100644 --- a/pkgs/tools/misc/lokalise2-cli/default.nix +++ b/pkgs/tools/misc/lokalise2-cli/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "lokalise2-cli"; - version = "2.6.7"; + version = "2.6.8"; src = fetchFromGitHub { owner = "lokalise"; repo = "lokalise-cli-2-go"; rev = "v${version}"; - sha256 = "sha256-p3JvaDDebbIgOvTh0e7yYe3qOXvj1pLSG95hpK62M7s="; + sha256 = "sha256-U8XN7cH64ICVxcjmIWBeelOT3qQlGt6MhOPgUWkCPF0="; }; - vendorSha256 = "sha256-KJ8haktP9qoG5QsKnTOkvE8L+SQ9Z6hrsjUeS0wrdLs="; + vendorSha256 = "sha256-PM3Jjgq6mbM6iVCXRos9UsqqFNaXOqq713GZ2R9tQww="; doCheck = false; diff --git a/pkgs/tools/misc/macchina/default.nix b/pkgs/tools/misc/macchina/default.nix index 042902d080c1..ad6dc1e55dd3 100644 --- a/pkgs/tools/misc/macchina/default.nix +++ b/pkgs/tools/misc/macchina/default.nix @@ -3,16 +3,16 @@ rustPlatform.buildRustPackage rec { pname = "macchina"; - version = "1.1.6"; + version = "5.0.2"; src = fetchFromGitHub { owner = "Macchina-CLI"; repo = pname; rev = "v${version}"; - sha256 = "sha256-JiyJU+5bKXHUgaRyUKdgINbMxkv2XXAkuoouQv9SEow="; + sha256 = "sha256-9T1baNmgzB3RBlFaaIQ47Yc9gJAgtS42NNEY1Tk/hBs="; }; - cargoSha256 = "sha256-pychP3OHXMv23TtZbaMOPBbEoJh4R03ySzEdwADTmFI="; + cargoSha256 = "sha256-A5C/B9R58p/DR6cONIRTSkmtXEOobtYHGBHxjdwagRA="; nativeBuildInputs = [ installShellFiles ]; buildInputs = lib.optionals stdenv.isDarwin [ libiconv Foundation ]; diff --git a/pkgs/tools/misc/most/default.nix b/pkgs/tools/misc/most/default.nix index de2118083d98..2073e066ae73 100644 --- a/pkgs/tools/misc/most/default.nix +++ b/pkgs/tools/misc/most/default.nix @@ -9,6 +9,11 @@ stdenv.mkDerivation rec { sha256 = "008537ns659pw2aag15imwjrxj73j26aqq90h285is6kz8gmv06v"; }; + patches = [ + # Upstream patch to fix parallel build failure + ./parallel-make.patch + ]; + outputs = [ "out" "doc" ]; makeFlags = [ @@ -26,6 +31,8 @@ stdenv.mkDerivation rec { buildInputs = [ slang ncurses ]; + enableParallelBuilding = true; + meta = with lib; { description = "A terminal pager similar to 'more' and 'less'"; longDescription = '' diff --git a/pkgs/tools/misc/most/parallel-make.patch b/pkgs/tools/misc/most/parallel-make.patch new file mode 100644 index 000000000000..07c2e47c673e --- /dev/null +++ b/pkgs/tools/misc/most/parallel-make.patch @@ -0,0 +1,18 @@ +Upstream commit c9cfad50a ("src/Makefile.in: Avoid a race condition +when performing a parallel build") + +--- a/src/Makefile.in ++++ b/src/Makefile.in +@@ -54,6 +54,12 @@ COMPILE_CMD = $(CC) -c $(ALL_CFLAGS) -DMOST_SYSTEM_INITFILE='"$(SYS_INITFILE)"' + all: $(EXEC) + $(EXEC): $(OBJDIR) $(CONFIG_H) slangversion $(OBJDIR)/$(EXEC) + @echo $(EXEC) created in $(OBJDIR) ++ ++# C source files include autogenrated "config.h". Make sure ++# it's available before the compilation. Pessimistically assume ++# any source file can depend on "config.h". ++$(OBJS) $(OBJDIR)/chkslang.o: $(CONFIG_H) ++ + $(OBJDIR)/$(EXEC): $(OBJS) + cd $(OBJDIR); $(CC) $(OFILES) -o $(EXEC) $(LDFLAGS) $(EXECLIBS) + # diff --git a/pkgs/tools/misc/nix-direnv/default.nix b/pkgs/tools/misc/nix-direnv/default.nix index 1873cc60557d..0de14426f213 100644 --- a/pkgs/tools/misc/nix-direnv/default.nix +++ b/pkgs/tools/misc/nix-direnv/default.nix @@ -2,14 +2,9 @@ , stdenv , fetchFromGitHub , gnugrep -, nixStable -, nixUnstable -, enableFlakes ? false +, nix +, enableFlakes ? null # deprecated }: - -let - nix = if enableFlakes then nixUnstable else nixStable; -in stdenv.mkDerivation rec { pname = "nix-direnv"; version = "1.5.0"; diff --git a/pkgs/tools/misc/nms/default.nix b/pkgs/tools/misc/nms/default.nix index 8edddc4238df..e74f18557f32 100644 --- a/pkgs/tools/misc/nms/default.nix +++ b/pkgs/tools/misc/nms/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "nms"; - version = "0.3.3"; + version = "1.0.1"; src = fetchFromGitHub { owner = "bartobri"; repo = "no-more-secrets"; rev = "v${version}"; - sha256 = "1zfv4qabikf8w9winsr4brxrdvs3f0d7xvydksyx8bydadsm2v2h"; + sha256 = "sha256-QVCEpplsZCSQ+Fq1LBtCuPBvnzgLsmLcSrxR+e4nA5I="; }; buildFlags = [ "nms" "sneakers" ]; diff --git a/pkgs/tools/misc/octofetch/default.nix b/pkgs/tools/misc/octofetch/default.nix new file mode 100644 index 000000000000..e0cf9d98d651 --- /dev/null +++ b/pkgs/tools/misc/octofetch/default.nix @@ -0,0 +1,33 @@ +{ lib +, stdenv +, fetchFromGitHub +, rustPlatform +, pkg-config +, openssl +, Security +}: + +rustPlatform.buildRustPackage rec { + pname = "octofetch"; + version = "0.3.3"; + + src = fetchFromGitHub { + owner = "azur1s"; + repo = pname; + rev = version; + sha256 = "sha256-/AXE1e02NfxQzJZd0QX6gJDjmFFmuUTOndulZElgIMI="; + }; + + cargoSha256 = "sha256:1ddyzbpsiy54r13nb9yrm64cbbifixnhkskwg5fvhhzj4ri4ks4a"; + + nativeBuildInputs = [ pkg-config ]; + buildInputs = lib.optionals stdenv.isLinux [ openssl ] + ++ lib.optionals stdenv.isDarwin [ Security ]; + + meta = with lib; { + description = "Github user information on terminal"; + homepage = "https://github.com/azur1s/octofetch"; + license = licenses.mit; + maintainers = with maintainers; [ jyooru ]; + }; +} diff --git a/pkgs/tools/misc/oggvideotools/default.nix b/pkgs/tools/misc/oggvideotools/default.nix index 2780354aa0e6..e6b8d9a1d288 100644 --- a/pkgs/tools/misc/oggvideotools/default.nix +++ b/pkgs/tools/misc/oggvideotools/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchurl, cmake, pkg-config, boost, gd, libogg, libtheora, libvorbis }: +{ lib, stdenv, fetchurl, fetchpatch, cmake, pkg-config, boost, gd, libogg, libtheora, libvorbis }: stdenv.mkDerivation rec { pname = "oggvideotools"; @@ -10,9 +10,30 @@ stdenv.mkDerivation rec { }; patches = [ - ./fix-compile.patch + # Fix pending upstream inclusion for missing includes: + # https://sourceforge.net/p/oggvideotools/bugs/12/ + (fetchpatch { + name = "gcc-10.patch"; + url = "https://sourceforge.net/p/oggvideotools/bugs/12/attachment/fix-compile.patch"; + sha256 = "sha256-mJttoC3jCLM3vmPhlyqh+W0ryp2RjJGIBXd6sJfLJA4="; + }) + + # Fix pending upstream inclusion for build failure on gcc-12: + # https://sourceforge.net/p/oggvideotools/bugs/13/ + (fetchpatch { + name = "gcc-12.patch"; + url = "https://sourceforge.net/p/oggvideotools/bugs/13/attachment/fix-gcc-12.patch"; + sha256 = "sha256-zuDXe86djWkR8SgYZHkuAJJ7Lf2VYsVRBrlEaODtMKE="; + # svn patch, rely on prefix added by fetchpatch: + extraPrefix = ""; + }) ]; + postPatch = '' + # Don't disable optimisations + substituteInPlace CMakeLists.txt --replace " -O0 " "" + ''; + nativeBuildInputs = [ cmake pkg-config ]; buildInputs = [ boost gd libogg libtheora libvorbis ]; diff --git a/pkgs/tools/misc/oggvideotools/fix-compile.patch b/pkgs/tools/misc/oggvideotools/fix-compile.patch deleted file mode 100644 index 65c3dd6a2351..000000000000 --- a/pkgs/tools/misc/oggvideotools/fix-compile.patch +++ /dev/null @@ -1,10 +0,0 @@ ---- oggvideotools-0.9.1/src/base/test/decoderTest.cpp 2016-09-05 10:35:14.000000000 +0200 -+++ oggvideotools-0.9.1/src/base/test/decoderTest.cpp 2021-10-22 22:42:48.980473419 +0200 -@@ -5,6 +5,7 @@ - #include "oggDecoder.h" - #include <vector> - #include <iostream> -+#include <cstring> - - int main(int argc, char* argv[]) - { diff --git a/pkgs/tools/misc/opentelemetry-collector/default.nix b/pkgs/tools/misc/opentelemetry-collector/default.nix index 3250047e0e3d..27dc4ee6d5c9 100644 --- a/pkgs/tools/misc/opentelemetry-collector/default.nix +++ b/pkgs/tools/misc/opentelemetry-collector/default.nix @@ -5,18 +5,20 @@ buildGoModule rec { pname = "opentelemetry-collector"; - version = "0.31.0"; + version = "0.38.0"; src = fetchFromGitHub { owner = "open-telemetry"; repo = "opentelemetry-collector-contrib"; rev = "v${version}"; - sha256 = "sha256-iJL3EFoBtp4UOLm4/b4JBwzK6iZSTE0cb6EzmlziOLk="; + sha256 = "1sgzz7p19vy7grvq1qrfgf5rw3yjnidcsdsky2l2g98i54md25ml"; }; - vendorSha256 = "sha256-LNlglYys4F7+W7PUmBT9cBnYs7y6AlB9wdaDibaxqC0="; + vendorSha256 = "1p9i01lwz7yidlmcri3pndmg8brgdrd0ai8sag9xn021hw2sn6qq"; proxyVendor = true; + CGO_ENABLED = 0; + subPackages = [ "cmd/otelcontribcol" ]; meta = with lib; { diff --git a/pkgs/tools/misc/ostree/default.nix b/pkgs/tools/misc/ostree/default.nix index 1508e6f93cd6..82851e8aad97 100644 --- a/pkgs/tools/misc/ostree/default.nix +++ b/pkgs/tools/misc/ostree/default.nix @@ -41,13 +41,13 @@ let ])); in stdenv.mkDerivation rec { pname = "ostree"; - version = "2021.3"; + version = "2021.4"; outputs = [ "out" "dev" "man" "installedTests" ]; src = fetchurl { url = "https://github.com/ostreedev/ostree/releases/download/v${version}/libostree-${version}.tar.xz"; - sha256 = "sha256-D6Wjnww+WMIEATPkIpyyhmDGG5eM1KKj0vbpfvTI0LM="; + sha256 = "sha256-21zgGhYGrzRm7HcjZwD1OmPOIOSYSlSdDquj9mo9k2E="; }; patches = [ diff --git a/pkgs/tools/misc/pistol/default.nix b/pkgs/tools/misc/pistol/default.nix index 6d91a54e56dc..44edf294f192 100644 --- a/pkgs/tools/misc/pistol/default.nix +++ b/pkgs/tools/misc/pistol/default.nix @@ -8,16 +8,16 @@ buildGoModule rec { pname = "pistol"; - version = "0.2.1"; + version = "0.2.2"; src = fetchFromGitHub { owner = "doronbehar"; repo = pname; rev = "v${version}"; - sha256 = "sha256-NUHk48P3kUx+e9BR9k9K/VaHnbZ6Do6RRf1S0974sO8="; + sha256 = "sha256-rpHtU8CnRh4C75tjdyJWCzbyaHvzyBpGSbJpXW8J9VM="; }; - vendorSha256 = "sha256-n98cjXsgg2w3shbZPnk3g7mBbzV5Tc3jd9ZtiRk1KUM="; + vendorSha256 = "sha256-ivFH7KtWf4nHCdAJrb6HgKP6aIIjgBKG5XwbeJHBDvU="; doCheck = false; diff --git a/pkgs/tools/misc/riemann-c-client/default.nix b/pkgs/tools/misc/riemann-c-client/default.nix index bce293d7cf8d..1a81372d7f60 100644 --- a/pkgs/tools/misc/riemann-c-client/default.nix +++ b/pkgs/tools/misc/riemann-c-client/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "riemann-c-client"; - version = "1.10.4"; + version = "1.10.5"; src = fetchFromGitHub { owner = "algernon"; repo = "riemann-c-client"; rev = "riemann-c-client-${version}"; - sha256 = "01gzqxqm1xvki2vd78c7my2kgp4fyhkcf5j5fmy8z0l93lgj82rr"; + sha256 = "sha256-LuI9XFDPx0qw/+kkpXd0FOMESERAp31R1+ttkGuJnPA="; }; nativeBuildInputs = [ autoreconfHook pkg-config ]; diff --git a/pkgs/tools/misc/sfeed/default.nix b/pkgs/tools/misc/sfeed/default.nix index 6e7a6914e574..5c39cc803b53 100644 --- a/pkgs/tools/misc/sfeed/default.nix +++ b/pkgs/tools/misc/sfeed/default.nix @@ -10,10 +10,9 @@ stdenv.mkDerivation rec { sha256 = "sha256-pLKWq4KIiT6X37EUIOw5SBb1KWopnFcDO+iE++Uie5s="; }; - installPhase = '' - mkdir $out - make install PREFIX=$out - ''; + makeFlags = [ "RANLIB:=$(RANLIB)" ]; + + installFlags = [ "PREFIX=$(out)" ]; meta = with lib; { homepage = "https://codemadness.org/sfeed-simple-feed-parser.html"; diff --git a/pkgs/tools/misc/steampipe/default.nix b/pkgs/tools/misc/steampipe/default.nix index e7d20bd8fc25..4885b48b339c 100644 --- a/pkgs/tools/misc/steampipe/default.nix +++ b/pkgs/tools/misc/steampipe/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "steampipe"; - version = "0.9.0"; + version = "0.9.1"; src = fetchFromGitHub { owner = "turbot"; repo = "steampipe"; rev = "v${version}"; - sha256 = "sha256-wG5KvyY40CNxIScuQHQdJ4u8fzNU+oV7iNe9VAvTQMg="; + sha256 = "sha256-asAqRCJdy8HmzWzuE9nSvxqo6EVY8tkljzEFAClogrs="; }; vendorSha256 = "sha256-3JBCiF1gxGCVn81s7abGvNIAy+eP7orAnSBOXUNImao="; diff --git a/pkgs/tools/misc/svtplay-dl/default.nix b/pkgs/tools/misc/svtplay-dl/default.nix index fff5c25cd6e6..ba065d322b86 100644 --- a/pkgs/tools/misc/svtplay-dl/default.nix +++ b/pkgs/tools/misc/svtplay-dl/default.nix @@ -9,13 +9,13 @@ let in stdenv.mkDerivation rec { pname = "svtplay-dl"; - version = "4.8"; + version = "4.9"; src = fetchFromGitHub { owner = "spaam"; repo = "svtplay-dl"; rev = version; - sha256 = "1mlf0yvj3zy3df0ip7qb6g4v7032rsz038a7d25zn6yfzsz04br3"; + sha256 = "01jbhydj6q1zgzsrs9prpsc3ycqzisx4jqm70dikkmsr5b64hhni"; }; pythonPaths = [ cryptography pyyaml requests ]; diff --git a/pkgs/tools/misc/swaglyrics/default.nix b/pkgs/tools/misc/swaglyrics/default.nix index a82a71abf96c..cc1835c55498 100644 --- a/pkgs/tools/misc/swaglyrics/default.nix +++ b/pkgs/tools/misc/swaglyrics/default.nix @@ -2,13 +2,13 @@ python3.pkgs.buildPythonApplication rec { pname = "swaglyrics"; - version = "1.2.2"; + version = "unstable-2021-06-17"; src = fetchFromGitHub { owner = "SwagLyrics"; repo = "SwagLyrics-For-Spotify"; - rev = "v${version}"; - sha256 = "1dwj9fpyhqqpm2z3imp8hfribkzxya891shh77yg77rc2xghp7mh"; + rev = "99fe764a9e45cac6cb9fcdf724c7d2f8cb4524fb"; + sha256 = "sha256-O48T1WsUIVnNQb8gmzSkFFHTOiFOKVSAEYhF9zUqZz0="; }; propagatedBuildInputs = with python3.pkgs; [ @@ -17,10 +17,9 @@ python3.pkgs.buildPythonApplication rec { preConfigure = '' substituteInPlace setup.py \ - --replace 'requests>=2.24.0' 'requests~=2.23' \ - --replace 'beautifulsoup4==4.9.1' 'beautifulsoup4~=4.9' \ - --replace 'colorama==0.4.3' 'colorama~=0.4' \ - --replace 'unidecode==1.1.1' 'unidecode~=1.2' + --replace 'beautifulsoup4==4.9.3' 'beautifulsoup4>=4.9.3' \ + --replace 'unidecode==1.2.0' 'unidecode>=1.2.0' \ + --replace 'flask==2.0.1' 'flask>=2.0.1' ''; preBuild = "export HOME=$NIX_BUILD_TOP"; @@ -43,6 +42,6 @@ python3.pkgs.buildPythonApplication rec { homepage = "https://github.com/SwagLyrics/SwagLyrics-For-Spotify"; license = licenses.mit; maintainers = with maintainers; [ siraben ]; - platforms = platforms.linux; + platforms = platforms.unix; }; } diff --git a/pkgs/tools/misc/tfk8s/default.nix b/pkgs/tools/misc/tfk8s/default.nix index daf5738d73ae..e1841ba426fa 100644 --- a/pkgs/tools/misc/tfk8s/default.nix +++ b/pkgs/tools/misc/tfk8s/default.nix @@ -44,6 +44,6 @@ buildGoModule rec { * Strip out server side fields when piping kubectl get $R -o yaml | tfk8s --strip ''; homepage = "https://github.com/jrhouston/tfk8s/"; - maintainers = with maintainers; [ ]; + maintainers = with maintainers; [ bryanasdev000 ]; }; } diff --git a/pkgs/tools/misc/thefuck/default.nix b/pkgs/tools/misc/thefuck/default.nix index 13509af98c02..a3aa31d4dedd 100644 --- a/pkgs/tools/misc/thefuck/default.nix +++ b/pkgs/tools/misc/thefuck/default.nix @@ -1,4 +1,4 @@ -{ lib, fetchFromGitHub, buildPythonApplication +{ lib, stdenv, fetchFromGitHub, buildPythonApplication , colorama, decorator, psutil, pyte, six , go, mock, pytestCheckHook, pytest-mock }: @@ -18,6 +18,23 @@ buildPythonApplication rec { checkInputs = [ go mock pytestCheckHook pytest-mock ]; + disabledTests = lib.optional stdenv.isDarwin [ + "test_settings_defaults" + "test_from_file" + "test_from_env" + "test_settings_from_args" + "test_get_all_executables_exclude_paths" + "test_with_blank_cache" + "test_with_filled_cache" + "test_when_etag_changed" + "test_for_generic_shell" + "test_on_first_run" + "test_on_run_after_other_commands" + "test_when_cant_configure_automatically" + "test_when_already_configured" + "test_when_successfully_configured" + ]; + meta = with lib; { homepage = "https://github.com/nvbn/thefuck"; description = "Magnificent app which corrects your previous console command"; diff --git a/pkgs/tools/misc/timidity/default.nix b/pkgs/tools/misc/timidity/default.nix index 368efcf9de30..42d6d5da4e08 100644 --- a/pkgs/tools/misc/timidity/default.nix +++ b/pkgs/tools/misc/timidity/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchurl, alsa-lib, libjack2, ncurses, pkg-config }: +{ lib, stdenv, fetchurl, alsa-lib, libjack2, CoreAudio, ncurses, pkg-config }: stdenv.mkDerivation rec { pname = "timidity"; @@ -12,9 +12,24 @@ stdenv.mkDerivation rec { patches = [ ./timidity-iA-Oj.patch ]; nativeBuildInputs = [ pkg-config ]; - buildInputs = [ alsa-lib libjack2 ncurses ]; + buildInputs = [ + libjack2 + ncurses + ] ++ lib.optionals stdenv.isLinux [ + alsa-lib + ] ++ lib.optionals stdenv.isDarwin [ + CoreAudio + ]; - configureFlags = [ "--enable-audio=oss,alsa,jack" "--enable-alsaseq" "--with-default-output=alsa" "--enable-ncurses" ]; + configureFlags = [ + "--enable-ncurses" + ] ++ lib.optionals stdenv.isLinux [ + "--enable-audio=oss,alsa,jack" + "--enable-alsaseq" + "--with-default-output=alsa" + ] ++ lib.optionals stdenv.isDarwin [ + "--enable-audio=darwin,jack" + ]; NIX_LDFLAGS = "-ljack -L${libjack2}/lib"; @@ -29,12 +44,14 @@ stdenv.mkDerivation rec { cp ${./timidity.cfg} $out/share/timidity/timidity.cfg tar --strip-components=1 -xf $instruments -C $out/share/timidity/ ''; + # This fixup step is unnecessary and fails on Darwin + dontRewriteSymlinks = stdenv.isDarwin; meta = with lib; { homepage = "https://sourceforge.net/projects/timidity/"; license = licenses.gpl2; description = "A software MIDI renderer"; maintainers = [ maintainers.marcweber ]; - platforms = platforms.linux; + platforms = platforms.unix; }; } diff --git a/pkgs/tools/misc/topicctl/default.nix b/pkgs/tools/misc/topicctl/default.nix new file mode 100644 index 000000000000..9ecbbcba37af --- /dev/null +++ b/pkgs/tools/misc/topicctl/default.nix @@ -0,0 +1,31 @@ +{ lib, buildGoModule, fetchFromGitHub }: + +buildGoModule rec { + pname = "topicctl"; + version = "1.1.1"; + + src = fetchFromGitHub { + owner = "segmentio"; + repo = "topicctl"; + rev = "v${version}"; + sha256 = "sha256-LsMt2BHfO0I5N2C247fmoOgQ5EXMgk/3Kj/lI+vTRV0="; + }; + + vendorSha256 = "sha256-ur7qMm7l1CocQwX58fTL1PpdgIEJyRAzSlNJM1WTvM0="; + + ldflags = [ + "-X main.BuildVersion=${version}" + "-X main.BuildCommitSha=unknown" + "-X main.BuildDate=unknown" + ]; + + # needs a kafka server + doCheck = false; + + meta = with lib; { + description = "A tool for easy, declarative management of Kafka topics"; + inherit (src.meta) homepage; + license = licenses.mit; + maintainers = with maintainers; [ eskytthe srhb ]; + }; +} diff --git a/pkgs/tools/misc/tty-clock/default.nix b/pkgs/tools/misc/tty-clock/default.nix index b6cca5fe5c33..dc802a6fe0f8 100644 --- a/pkgs/tools/misc/tty-clock/default.nix +++ b/pkgs/tools/misc/tty-clock/default.nix @@ -1,16 +1,27 @@ -{ lib, stdenv, fetchFromGitHub, ncurses, pkg-config }: +{ lib, stdenv, fetchFromGitHub, fetchpatch, ncurses, pkg-config }: stdenv.mkDerivation rec { pname = "tty-clock"; - version = "2.3"; + version = "2.3+unstable=2021-04-07"; src = fetchFromGitHub { owner = "xorg62"; repo = "tty-clock"; - rev = "v${version}"; - sha256 = "16v3pmva13skpfjja96zacjpxrwzs1nb1iqmrp2qzvdbcm9061pp"; + # Use unreleased version to pull in fix for ncurses-6.3 + rev = "9e00c32098524c30dac4dab701f7e33f8bc7c880"; + sha256 = "14jrzz06jr29887bxgad1x6kd26c2fnqrc26864wqm3838fpcqw0"; }; + patches = [ + # Pull upstream patch pending inclusion fir more ncurses-6.3 fixes: + # https://github.com/xorg62/tty-clock/pull/100 + (fetchpatch { + name = "ncurses-6.2.patch"; + url = "https://github.com/xorg62/tty-clock/commit/4cfd73080da1964557484da620c401745d73881c.patch"; + sha256 = "13pj1v6yrfc4vynsa746974kixfxxsy2jzzpl73c8bp7msr9d3md"; + }) + ]; + nativeBuildInputs = [ pkg-config ]; buildInputs = [ ncurses ]; diff --git a/pkgs/tools/misc/uwuify/default.nix b/pkgs/tools/misc/uwuify/default.nix index b276abf3e5ce..2722610d0e3f 100644 --- a/pkgs/tools/misc/uwuify/default.nix +++ b/pkgs/tools/misc/uwuify/default.nix @@ -18,6 +18,7 @@ rustPlatform.buildRustPackage rec { description = "Fast text uwuifier"; homepage = "https://github.com/Daniel-Liu-c0deb0t/uwu"; license = licenses.mit; + platforms = lib.platforms.x86; # uses SSE instructions maintainers = with maintainers; [ siraben ]; }; } diff --git a/pkgs/tools/misc/wakatime/default.nix b/pkgs/tools/misc/wakatime/default.nix index e8bd12d567b6..5cd52a6a4ac3 100644 --- a/pkgs/tools/misc/wakatime/default.nix +++ b/pkgs/tools/misc/wakatime/default.nix @@ -1,26 +1,17 @@ -{ lib, python3Packages, fetchFromGitHub, glibcLocales }: +{ lib, buildGoModule, fetchFromGitHub }: -with python3Packages; -buildPythonApplication rec { +buildGoModule rec { pname = "wakatime"; - version = "13.0.7"; + version = "1.18.7"; src = fetchFromGitHub { owner = "wakatime"; - repo = "wakatime"; - rev = version; - sha256 = "1rnapzaabg962wxrmfcq9lxz0yyqd3mxqbx3dq1ih4w33lf4fi8d"; + repo = "wakatime-cli"; + rev = "v${version}"; + sha256 = "171x4pixmh5ni89iawdjl1fk9gr10bgp5bnslpskhspcqzyl1y5b"; }; - # needs more dependencies from https://github.com/wakatime/wakatime/blob/191b302bfb5f272ae928c6d3867d06f3dfcba4a8/dev-requirements.txt - # especially nose-capturestderr, which we do not package yet. - doCheck = false; - checkInputs = [ mock testfixtures pytest glibcLocales ]; - - checkPhase = '' - export HOME=$(mktemp -d) LC_ALL=en_US.utf-8 - pytest tests - ''; + vendorSha256 = "01c2vbnafhhm345nyfmvbvj5mga6laf9w46lhh0flq6kdgdw168s"; meta = with lib; { inherit (src.meta) homepage; diff --git a/pkgs/tools/misc/youtube-dl/default.nix b/pkgs/tools/misc/youtube-dl/default.nix index 680000b33713..20869ac4d792 100644 --- a/pkgs/tools/misc/youtube-dl/default.nix +++ b/pkgs/tools/misc/youtube-dl/default.nix @@ -1,4 +1,4 @@ -{ lib, fetchurl, buildPythonPackage +{ lib, fetchurl, fetchpatch, buildPythonPackage , zip, ffmpeg, rtmpdump, phantomjs2, atomicparsley, pycryptodome, pandoc # Pandoc is required to build the package's man page. Release tarballs contain a # formatted man page already, though, it will still be installed. We keep the @@ -25,6 +25,20 @@ buildPythonPackage rec { sha256 = "1hqan9h55x9gfdakw554vic68w9gpvhblchwxlw265zxp56hxjrw"; }; + patches = [ + # Fixes throttling on youtube.com. Without the patch downloads are capped at + # about 80KiB/s. See, e.g., + # + # https://github.com/ytdl-org/youtube-dl/issues/29326 + # + # The patch comes from PR https://github.com/ytdl-org/youtube-dl/pull/30188 + (fetchpatch { + name = "fix-youtube-dl-speed.patch"; + url = "https://github.com/ytdl-org/youtube-dl/pull/30188.patch"; + sha256 = "15liban37ina2y4bnykfdywdy4rbkfff2r6vd0kqn2k7rfkcczyz"; + }) + ]; + nativeBuildInputs = [ installShellFiles makeWrapper ]; buildInputs = [ zip ] ++ lib.optional generateManPage pandoc; propagatedBuildInputs = lib.optional hlsEncryptedSupport pycryptodome; diff --git a/pkgs/tools/misc/yt-dlp/default.nix b/pkgs/tools/misc/yt-dlp/default.nix index b05df0ae611c..6a6a019dcbee 100644 --- a/pkgs/tools/misc/yt-dlp/default.nix +++ b/pkgs/tools/misc/yt-dlp/default.nix @@ -20,12 +20,12 @@ buildPythonPackage rec { # The websites yt-dlp deals with are a very moving target. That means that # downloads break constantly. Because of that, updates should always be backported # to the latest stable release. - version = "2021.10.22"; + version = "2021.11.10.1"; src = fetchPypi { inherit pname; version = builtins.replaceStrings [ ".0" ] [ "." ] version; - sha256 = "sha256-okuWZr0iNBSeTajE8Wu45fdGwpQo0S7gT8HBG1JHowc="; + sha256 = "f0ad6ae2e2838b608df2fd125f2a777a7ad832d3e757ee6d4583b84b21e44388"; }; propagatedBuildInputs = [ websockets mutagen ] diff --git a/pkgs/tools/misc/ytree/default.nix b/pkgs/tools/misc/ytree/default.nix index 9121b1289f24..fcfbdbd10da1 100644 --- a/pkgs/tools/misc/ytree/default.nix +++ b/pkgs/tools/misc/ytree/default.nix @@ -6,11 +6,11 @@ stdenv.mkDerivation rec { pname = "ytree"; - version = "2.03"; + version = "2.04"; src = fetchurl { url = "https://han.de/~werner/${pname}-${version}.tar.gz"; - sha256 = "sha256-WDqnFVLRNH4Oq+OaI2+loXS/Z93piHGFO5/iojO8rvE="; + sha256 = "sha256-bnqLf2jv5tNlq+M6HQbXOa2F8io9VN3QrsJKNHjWZkI="; }; buildInputs = [ diff --git a/pkgs/tools/misc/yubikey-manager/default.nix b/pkgs/tools/misc/yubikey-manager/default.nix index 2b7e73b35516..23b040f26097 100644 --- a/pkgs/tools/misc/yubikey-manager/default.nix +++ b/pkgs/tools/misc/yubikey-manager/default.nix @@ -2,13 +2,13 @@ python3Packages.buildPythonPackage rec { pname = "yubikey-manager"; - version = "4.0.5"; + version = "4.0.7"; src = fetchFromGitHub { repo = "yubikey-manager"; rev = version; owner = "Yubico"; - sha256 = "sha256:0ycp7k6lkxzqwkc16fifhyqaqi7hl3351pwddsn18r5l83jnzdn2"; + sha256 = "sha256-PG/mIM1rcs1SAz2kfQtfUWoMBIwLz2ASZM0YQrz9w5I="; }; postPatch = '' diff --git a/pkgs/tools/networking/amass/default.nix b/pkgs/tools/networking/amass/default.nix index 84f3e8b56e1f..63ecdb550a84 100644 --- a/pkgs/tools/networking/amass/default.nix +++ b/pkgs/tools/networking/amass/default.nix @@ -5,16 +5,16 @@ buildGoModule rec { pname = "amass"; - version = "3.14.2"; + version = "3.15.0"; src = fetchFromGitHub { owner = "OWASP"; repo = "Amass"; rev = "v${version}"; - sha256 = "sha256-tyM9MscitFgV6XW7hwSrZfdYAv+08yN09ibA6OnUidA="; + sha256 = "sha256-AOWVz+JQvri7H2k2vDSuDmTHPAVCb7MCi4uCJcj0Yjs="; }; - vendorSha256 = "sha256-Ty1feBGgn5w6BXTEqdzWRzmUuUqRZaE4GiQrRMB3yrM="; + vendorSha256 = "sha256-lM/UWrljJHks+by4kUjlk0f39j/Qo+5+kxUVgrsO0zE="; outputs = [ "out" "wordlists" ]; diff --git a/pkgs/tools/networking/bsd-finger/default.nix b/pkgs/tools/networking/bsd-finger/default.nix index 354c669b3366..4f8d946fa360 100644 --- a/pkgs/tools/networking/bsd-finger/default.nix +++ b/pkgs/tools/networking/bsd-finger/default.nix @@ -7,7 +7,7 @@ stdenv.mkDerivation rec { version = "0.17"; src = fetchurl { - url = "ftp://ftp.metalab.unc.edu/pub/linux/system/network/finger/bsd-finger-${version}.tar.gz"; + url = "mirror://metalab/system/network/finger/bsd-finger-${version}.tar.gz"; sha256 = "1yhkiv0in588il7f84k2xiy78g9lv12ll0y7047gazhiimk5v244"; }; diff --git a/pkgs/tools/networking/bwm-ng/default.nix b/pkgs/tools/networking/bwm-ng/default.nix index 97f0d1823af2..cfe0d4176a6f 100644 --- a/pkgs/tools/networking/bwm-ng/default.nix +++ b/pkgs/tools/networking/bwm-ng/default.nix @@ -2,6 +2,7 @@ , stdenv , autoreconfHook , fetchurl +, fetchpatch , ncurses }: @@ -14,6 +15,17 @@ stdenv.mkDerivation rec { sha256 = "0ikzyvnb73msm9n7ripg1dsw9av1i0c7q2hi2173xsj8zyv559f1"; }; + patches = [ + # Pull upstream fix for ncurses-6.3 support. + (fetchpatch { + name = "ncurses-6.3.patch"; + url = "https://github.com/vgropp/bwm-ng/commit/6a2087db6cc7ac5b5f667fcd17c262c079e8dcf2.patch"; + sha256 = "1l5dii9d52v0x0sq458ybw7m9p8aan2vl94gwx5s8mgxsnbcmzzx"; + # accidentally committed changes + excludes = [ "config.h.in~" "configure.in" "configure~" ]; + }) + ]; + nativeBuildInputs = [ autoreconfHook ]; diff --git a/pkgs/tools/networking/chrony/default.nix b/pkgs/tools/networking/chrony/default.nix index 24968c64a093..1fc5e84fddef 100644 --- a/pkgs/tools/networking/chrony/default.nix +++ b/pkgs/tools/networking/chrony/default.nix @@ -22,7 +22,7 @@ stdenv.mkDerivation rec { hardeningEnable = [ "pie" ]; - configureFlags = [ "--chronyvardir=$(out)/var/lib/chrony" ] + configureFlags = [ "--chronyvardir=$(out)/var/lib/chrony" "--enable-ntp-signd" ] ++ lib.optional stdenv.isLinux "--enable-scfilter"; meta = with lib; { diff --git a/pkgs/tools/networking/connman/connman.nix b/pkgs/tools/networking/connman/connman.nix index 3ec9bce0b4c7..c92cceeabc6f 100644 --- a/pkgs/tools/networking/connman/connman.nix +++ b/pkgs/tools/networking/connman/connman.nix @@ -1,5 +1,6 @@ { lib, stdenv , fetchurl +, fetchpatch , pkg-config , file , glib @@ -61,23 +62,31 @@ stdenv.mkDerivation rec { sha256 = "sha256-GleufOI0qjoXRKrDvlwhIdmNzpmUQO+KucxO39XtyxI="; }; + patches = lib.optionals stdenv.hostPlatform.isMusl [ + # Fix Musl build by avoiding a Glibc-only API. + (fetchpatch { + url = "https://git.alpinelinux.org/aports/plain/community/connman/libresolv.patch?id=e393ea84386878cbde3cccadd36a30396e357d1e"; + sha256 = "1kg2nml7pdxc82h5hgsa3npvzdxy4d2jpz2f93pa97if868i8d43"; + }) + ]; + buildInputs = [ glib dbus libmnl gnutls readline - ] ++ optionals (enableOpenconnect) [ openconnect ]; + ] ++ optionals (enableOpenconnect) [ openconnect ] + ++ optionals (firewallType == "iptables") [ iptables ] + ++ optionals (firewallType == "nftables") [ libnftnl ] + ++ optionals (enablePolkit) [ polkit ] + ++ optionals (enablePptp) [ pptp ppp ] + ; nativeBuildInputs = [ pkg-config file - ] - ++ optionals (enablePolkit) [ polkit ] - ++ optionals (enablePptp) [ pptp ppp ] - ++ optionals (firewallType == "iptables") [ iptables ] - ++ optionals (firewallType == "nftables") [ libnftnl ] - ; + ]; # fix invalid path to 'file' postPatch = '' diff --git a/pkgs/tools/networking/connman/connman_dmenu/default.nix b/pkgs/tools/networking/connman/connman_dmenu/default.nix index 3ac730f471f7..86e5a62fb8de 100644 --- a/pkgs/tools/networking/connman/connman_dmenu/default.nix +++ b/pkgs/tools/networking/connman/connman_dmenu/default.nix @@ -2,7 +2,7 @@ stdenv.mkDerivation { pname = "connman_dmenu"; - version = "git-29-9-2015"; + version = "unstable-2015-09-29"; src = fetchFromGitHub { owner = "march-linux"; @@ -26,10 +26,10 @@ stdenv.mkDerivation { ''; meta = { - description = "A dmenu wrapper for connmann"; - homepage = "https://github.com/march-linux/connman_dmenu"; - license = lib.licenses.free; - maintainers = [ lib.maintainers.magnetophon ]; - platforms = lib.platforms.all; + description = "A dmenu wrapper for connmann"; + homepage = "https://github.com/march-linux/connman_dmenu"; + license = lib.licenses.free; + maintainers = [ lib.maintainers.magnetophon ]; + platforms = lib.platforms.all; }; } diff --git a/pkgs/tools/networking/curlie/default.nix b/pkgs/tools/networking/curlie/default.nix index 9d3e4025a991..2e6683ef4ea3 100644 --- a/pkgs/tools/networking/curlie/default.nix +++ b/pkgs/tools/networking/curlie/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "curlie"; - version = "1.6.2"; + version = "1.6.7"; src= fetchFromGitHub { owner = "rs"; repo = pname; rev = "v${version}"; - sha256 = "sha256-2CZpqc1MnAY6M1UFakKLaqGjaifw+7bN4hxc0jWgSps="; + sha256 = "sha256-uWLJWhsqJaLji2JSuVX8Vu929AdozhtAPwsqXdpEt84="; }; vendorSha256 = "sha256-tYZtnD7RUurhl8yccXlTIvOxybBJITM+it1ollYJ1OI="; diff --git a/pkgs/tools/networking/dd-agent/datadog-agent.nix b/pkgs/tools/networking/dd-agent/datadog-agent.nix index 7f500b2c09fc..e050b68ca2d5 100644 --- a/pkgs/tools/networking/dd-agent/datadog-agent.nix +++ b/pkgs/tools/networking/dd-agent/datadog-agent.nix @@ -10,15 +10,15 @@ let in buildGoModule rec { pname = "datadog-agent"; - version = "7.30.2"; + version = "7.31.0"; src = fetchFromGitHub { inherit owner repo; rev = version; - sha256 = "17ahrxhb87sj7f04wg44xv4k9wrlvf04j92ac5936a6maygp01rd"; + sha256 = "sha256-APwR3/bvCHNnJWxRPSLLe4lHYv39wfw3WhGDEkxAku8="; }; - vendorSha256 = "06ryy501vibc6n14qwg94394c76l060525y6qg261qb748mbi8qi"; + vendorSha256 = "sha256-CNQJvnNnB29duALEXPguEJsoRHdieAiPFbwXa89jxUk="; subPackages = [ "cmd/agent" diff --git a/pkgs/tools/networking/dhcpdump/default.nix b/pkgs/tools/networking/dhcpdump/default.nix index b8bd1d88bf20..d940731c7c95 100644 --- a/pkgs/tools/networking/dhcpdump/default.nix +++ b/pkgs/tools/networking/dhcpdump/default.nix @@ -5,7 +5,7 @@ stdenv.mkDerivation rec { version = "1.8"; src = fetchurl { - url = "http://archive.ubuntu.com/ubuntu/pool/universe/d/dhcpdump/dhcpdump_${version}.orig.tar.gz"; + url = "mirror://ubuntu/pool/universe/d/dhcpdump/dhcpdump_${version}.orig.tar.gz"; sha256 = "143iyzkqvhj4dscwqs75jvfr4wvzrs11ck3fqn5p7yv2h50vjpkd"; }; diff --git a/pkgs/tools/networking/djbdns/default.nix b/pkgs/tools/networking/djbdns/default.nix index 1b93d64d08f5..52f7e9a0fb55 100644 --- a/pkgs/tools/networking/djbdns/default.nix +++ b/pkgs/tools/networking/djbdns/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchurl, glibc, dns-root-data } : +{ lib, stdenv, fetchurl, glibc, dns-root-data, nixosTests } : let version = "1.05"; @@ -19,7 +19,14 @@ stdenv.mkDerivation { sha256 = "0j3baf92vkczr5fxww7rp1b7gmczxmmgrqc8w2dy7kgk09m85k9w"; }; - patches = [ ./hier.patch ./fix-nix-usernamespace-build.patch ]; + patches = [ + ./hier.patch + ./fix-nix-usernamespace-build.patch + + # To fix https://github.com/NixOS/nixpkgs/issues/119066. + # Note that the NixOS test <nixpkgs/nixos/tests/tinydns.nix> tests for this. + ./softlimit.patch + ]; postPatch = '' echo gcc -O2 -include ${glibc.dev}/include/errno.h > conf-cc @@ -41,6 +48,10 @@ stdenv.mkDerivation { rm -rv djbdns-man; ''; + passthru.tests = { + tinydns = nixosTests.tinydns; + }; + meta = with lib; { description = "A collection of Domain Name System tools"; longDescription = "Includes software for all the fundamental DNS operations: DNS cache: finding addresses of Internet hosts; DNS server: publishing addresses of Internet hosts; and DNS client: talking to a DNS cache."; diff --git a/pkgs/tools/networking/djbdns/softlimit.patch b/pkgs/tools/networking/djbdns/softlimit.patch new file mode 100644 index 000000000000..68598703ef43 --- /dev/null +++ b/pkgs/tools/networking/djbdns/softlimit.patch @@ -0,0 +1,12 @@ +diff -Naur a/tinydns-conf.c b/tinydns-conf.c +--- a/tinydns-conf.c 2001-02-11 21:11:45.000000000 +0000 ++++ b/tinydns-conf.c 2021-11-08 17:23:06.181385437 +0000 +@@ -46,7 +46,7 @@ + + start("run"); + outs("#!/bin/sh\nexec 2>&1\nexec envuidgid "); outs(user); +- outs(" envdir ./env softlimit -d300000 "); ++ outs(" envdir ./env softlimit -d4500000 "); + outs(auto_home); outs("/bin/tinydns\n"); + finish(); + perm(0755); diff --git a/pkgs/tools/networking/easyrsa/2.x.nix b/pkgs/tools/networking/easyrsa/2.x.nix index 52cf2082d63f..42188cfbfff1 100644 --- a/pkgs/tools/networking/easyrsa/2.x.nix +++ b/pkgs/tools/networking/easyrsa/2.x.nix @@ -1,11 +1,18 @@ -{ lib, stdenv, fetchurl, autoreconfHook, makeWrapper -, gnugrep, openssl }: +{ lib +, stdenv +, fetchurl +, autoreconfHook +, makeWrapper +, gnugrep +, openssl +}: -stdenv.mkDerivation { - name = "easyrsa-2.2.0"; +stdenv.mkDerivation rec { + pname = "easyrsa"; + version = "2.2.0"; src = fetchurl { - url = "https://github.com/OpenVPN/easy-rsa/archive/v2.2.0.tar.gz"; + url = "https://github.com/OpenVPN/easy-rsa/archive/v${version}.tar.gz"; sha256 = "1xq4by5frb6ikn53ss3y8v7ss639dccxfq8jfrbk07ynkmk668qk"; }; diff --git a/pkgs/tools/networking/eternal-terminal/default.nix b/pkgs/tools/networking/eternal-terminal/default.nix index 21bd75a3ebae..7724d2d89fdc 100644 --- a/pkgs/tools/networking/eternal-terminal/default.nix +++ b/pkgs/tools/networking/eternal-terminal/default.nix @@ -10,13 +10,13 @@ stdenv.mkDerivation rec { pname = "eternal-terminal"; - version = "6.1.8"; + version = "6.1.9"; src = fetchFromGitHub { owner = "MisterTea"; repo = "EternalTerminal"; rev = "et-v${version}"; - sha256 = "sha256-VSJ6AoVBvlCdKSirSDqsemixF+kAnvPgBQlyJxjoPcs="; + sha256 = "0kpabxpy779ppkaqaigq0x34ymz1jcwpsa78rm6nr55mdap2xxv6"; }; cmakeFlags= [ diff --git a/pkgs/tools/networking/godns/default.nix b/pkgs/tools/networking/godns/default.nix index fb46a144ee7b..f04b40da0c4f 100644 --- a/pkgs/tools/networking/godns/default.nix +++ b/pkgs/tools/networking/godns/default.nix @@ -2,21 +2,21 @@ buildGoModule rec { pname = "godns"; - version = "2.5"; + version = "2.5.1"; src = fetchFromGitHub { owner = "TimothyYe"; repo = "godns"; rev = "v${version}"; - sha256 = "sha256-ia0FmV2KlFPh9gmKOqVxiStgmBbX9vUIc7KllpUt44Q="; + sha256 = "sha256-a0wq/qPtwhAtm8khQsusHpsjXzsYixHqH1aAeBs1dKM="; }; - vendorSha256 = "sha256-FZLDaMrPEyoTGFmGBlpqPWsMuobqwkBaot5qjcRJe9w="; + vendorSha256 = "sha256-TYjkow/9W467CMyqV2SSRJAuqXGdnAgR9gtfq4vX4u0="; # Some tests require internet access, broken in sandbox doCheck = false; - ldflags = [ "-X main.Version=${version}" ]; + ldflags = [ "-s" "-w" "-X main.Version=${version}" ]; meta = with lib; { description = "A dynamic DNS client tool supports AliDNS, Cloudflare, Google Domains, DNSPod, HE.net & DuckDNS & DreamHost, etc"; diff --git a/pkgs/tools/networking/innernet/default.nix b/pkgs/tools/networking/innernet/default.nix index cf63342fbb65..608a7379ef9a 100644 --- a/pkgs/tools/networking/innernet/default.nix +++ b/pkgs/tools/networking/innernet/default.nix @@ -2,15 +2,15 @@ rustPlatform.buildRustPackage rec { pname = "innernet"; - version = "1.5.0"; + version = "1.5.1"; src = fetchFromGitHub { owner = "tonarino"; - repo = pname; + repo = "innernet"; rev = "v${version}"; - sha256 = "sha256-9oL91jacfUADaPvdTTvvXhpwzr9OnNnVLwy1okORss4="; + sha256 = "1ja7khvc4cy317ckglnlf11wfmin62ihic061phdp6rmfv95cza0"; }; - cargoSha256 = "sha256-jHWt7Jqv4B7u6Mvo3q69Omcn8kdnXGJSyzod1lDzvKE="; + cargoSha256 = "18xpwav48xv7xm7r3w9qplmv2i18cg09pkahyvs5l4akdjgxyw10"; nativeBuildInputs = with llvmPackages; [ llvm diff --git a/pkgs/tools/networking/mcrcon/default.nix b/pkgs/tools/networking/mcrcon/default.nix index ed2596bc88ba..713a3dbfd91b 100644 --- a/pkgs/tools/networking/mcrcon/default.nix +++ b/pkgs/tools/networking/mcrcon/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "mcrcon"; - version = "0.7.1"; + version = "0.7.2"; src = fetchFromGitHub { owner = "Tiiffi"; repo = "mcrcon"; rev = "v${version}"; - sha256 = "004h1glagyw1mic1k461bky0w2fxdfhrhcqjzr9wp6gvyy9s8bix"; + sha256 = "sha256-cedeKsZgEyu0jqN4kBSgMJzFNUfCVXCEwH3M54miSG4="; }; buildPhase = '' diff --git a/pkgs/tools/networking/minio-client/default.nix b/pkgs/tools/networking/minio-client/default.nix index f4907da645ad..b448c6d35940 100644 --- a/pkgs/tools/networking/minio-client/default.nix +++ b/pkgs/tools/networking/minio-client/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "minio-client"; - version = "2021-09-02T09-21-27Z"; + version = "2021-10-07T04-19-58Z"; src = fetchFromGitHub { owner = "minio"; repo = "mc"; rev = "RELEASE.${version}"; - sha256 = "sha256-6G0MyeDYc8Y6eib2T+2VB5mDjyO13FdBsufy57osIEk="; + sha256 = "sha256-FF4blsNzr2M/ZZ2epTBhFkoj6s9Iw5GGXY65mKftojk="; }; - vendorSha256 = "sha256-J1khnNTiHkTPRjNlU2yQu8b+bwKP/KBF1KxTIvGLs+U="; + vendorSha256 = "sha256-GFxB5Gxnc6m91EjF2z108J1WmggCQrUhxwEA+Sih+94="; subPackages = [ "." ]; diff --git a/pkgs/tools/networking/mosh/default.nix b/pkgs/tools/networking/mosh/default.nix index 00746a7afbd2..e87b550aa6fe 100644 --- a/pkgs/tools/networking/mosh/default.nix +++ b/pkgs/tools/networking/mosh/default.nix @@ -30,6 +30,7 @@ stdenv.mkDerivation rec { # Fix build with bash-completion 2.10 ./bash_completion_datadir.patch ]; + postPatch = '' # Fix build with Xcode 12.5 toolchain/case-insensitive filesystems # Backport of https://github.com/mobile-shell/mosh/commit/12199114fe4234f791ef4c306163901643b40538; @@ -40,12 +41,12 @@ stdenv.mkDerivation rec { }} substituteInPlace scripts/mosh.pl \ - --subst-var-by ssh "${openssh}/bin/ssh" - substituteInPlace scripts/mosh.pl \ - --subst-var-by mosh-client "$out/bin/mosh-client" + --subst-var-by ssh "${openssh}/bin/ssh" \ + --subst-var-by mosh-client "$out/bin/mosh-client" ''; - configureFlags = [ "--enable-completion" ] ++ lib.optional withUtempter "--with-utempter"; + configureFlags = [ "--enable-completion" ] + ++ lib.optional withUtempter "--with-utempter"; postInstall = '' wrapProgram $out/bin/mosh --prefix PERL5LIB : $PERL5LIB @@ -65,7 +66,7 @@ stdenv.mkDerivation rec { especially over Wi-Fi, cellular, and long-distance links. ''; license = licenses.gpl3Plus; - maintainers = with maintainers; [ viric ]; + maintainers = with maintainers; [ viric SuperSandro2000 ]; platforms = platforms.unix; }; } diff --git a/pkgs/tools/networking/mu/default.nix b/pkgs/tools/networking/mu/default.nix index b94cc498fa09..47d0dffda007 100644 --- a/pkgs/tools/networking/mu/default.nix +++ b/pkgs/tools/networking/mu/default.nix @@ -7,13 +7,13 @@ stdenv.mkDerivation rec { pname = "mu"; - version = "1.6.9"; + version = "1.6.10"; src = fetchFromGitHub { owner = "djcb"; repo = "mu"; rev = version; - sha256 = "RoSj283fcllEbirZOScKRU4BKLoxgatDdL1qYZu+LEI="; + sha256 = "1uJB8QdR0JgWlogb1cdUicz+LLtYQpAvYJjwcRjXt+E="; }; postPatch = lib.optionalString (batchSize != null) '' diff --git a/pkgs/tools/networking/ndn-tools/default.nix b/pkgs/tools/networking/ndn-tools/default.nix new file mode 100644 index 000000000000..83a8182b4275 --- /dev/null +++ b/pkgs/tools/networking/ndn-tools/default.nix @@ -0,0 +1,45 @@ +{ lib +, stdenv +, boost +, fetchFromGitHub +, libpcap +, ndn-cxx +, openssl +, pkg-config +, sphinx +, wafHook +}: + +stdenv.mkDerivation rec { + pname = "ndn-tools"; + version = "0.7.1"; + + src = fetchFromGitHub { + owner = "named-data"; + repo = pname; + rev = "ndn-tools-${version}"; + sha256 = "1q2d0v8srqjbvigr570qw6ia0d9f88aj26ccyxkzjjwwqdx3y4fy"; + }; + + nativeBuildInputs = [ pkg-config sphinx wafHook ]; + buildInputs = [ libpcap ndn-cxx openssl ]; + + wafConfigureFlags = [ + "--boost-includes=${boost.dev}/include" + "--boost-libs=${boost.out}/lib" + "--with-tests" + ]; + + doCheck = true; + checkPhase = '' + build/unit-tests + ''; + + meta = with lib; { + homepage = "https://named-data.net/"; + description = "Named Data Neworking (NDN) Essential Tools"; + license = licenses.gpl3Plus; + platforms = platforms.unix; + maintainers = with maintainers; [ bertof ]; + }; +} diff --git a/pkgs/tools/networking/nethogs/default.nix b/pkgs/tools/networking/nethogs/default.nix index 872e22a4f2ab..c26cb527f55e 100644 --- a/pkgs/tools/networking/nethogs/default.nix +++ b/pkgs/tools/networking/nethogs/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchFromGitHub, ncurses, libpcap }: +{ lib, stdenv, fetchFromGitHub, fetchpatch, ncurses, libpcap }: stdenv.mkDerivation rec { pname = "nethogs"; @@ -11,6 +11,16 @@ stdenv.mkDerivation rec { sha256 = "0sn1sdp86akwlm4r1vmkxjjl50c0xaisk91bbz57z7kcsaphxna9"; }; + patches = [ + # Pull upstream patch for ncurses-6.3 support: + # https://github.com/raboof/nethogs/pull/210 + (fetchpatch { + name = "ncurses-6.3.patch"; + url = "https://github.com/raboof/nethogs/commit/455daf357da7f394763e5b93b11b3defe1f82ed1.patch"; + sha256 = "0wkp0yr6qg1asgvmsn7blf7rq48sh5k4n3w0nxf5869hxvkhnnzs"; + }) + ]; + buildInputs = [ ncurses libpcap ]; makeFlags = [ "VERSION=${version}" "nethogs" ]; diff --git a/pkgs/tools/networking/ngrep/default.nix b/pkgs/tools/networking/ngrep/default.nix index 1e57ac75843e..bee8678d1c93 100644 --- a/pkgs/tools/networking/ngrep/default.nix +++ b/pkgs/tools/networking/ngrep/default.nix @@ -48,7 +48,7 @@ stdenv.mkDerivation rec { # 'BSD-like' license but that the 'regex' library (in the ngrep tarball) is # GPLv2. license = "ngrep"; # Some custom BSD-style, see LICENSE.txt - platforms = platforms.linux; + platforms = with platforms; linux ++ darwin; maintainers = [ maintainers.bjornfor ]; }; } diff --git a/pkgs/tools/networking/ngrok-2/default.nix b/pkgs/tools/networking/ngrok-2/default.nix index 2840b9d8400a..f1f8545c96de 100644 --- a/pkgs/tools/networking/ngrok-2/default.nix +++ b/pkgs/tools/networking/ngrok-2/default.nix @@ -2,7 +2,7 @@ with lib; -let versions = builtins.fromJSON (builtins.readFile ./versions.json); +let versions = lib.importJSON ./versions.json; arch = if stdenv.isi686 then "386" else if stdenv.isx86_64 then "amd64" else if stdenv.isAarch32 then "arm" diff --git a/pkgs/tools/networking/nss-mdns/default.nix b/pkgs/tools/networking/nss-mdns/default.nix index 6faf1f06dbb8..6ba996401a84 100644 --- a/pkgs/tools/networking/nss-mdns/default.nix +++ b/pkgs/tools/networking/nss-mdns/default.nix @@ -21,14 +21,13 @@ stdenv.mkDerivation rec { "--localstatedir=/var" ]; - patches = lib.optional stdenv.hostPlatform.isMusl - ( - fetchpatch - { - url = "https://raw.githubusercontent.com/openembedded/openembedded-core/94f780e889f194b67a48587ac68b3200288bee10/meta/recipes-connectivity/libnss-mdns/libnss-mdns/0001-check-for-nss.h.patch"; - sha256 = "1l1kjbdw8z31br4vib3l5b85jy7kxin760a2f24lww8v6lqdpgds"; - } - ); + patches = [ + # Provide compat definition for libc lacking <nss.h> (e.g. musl) + (fetchpatch { + url = "https://raw.githubusercontent.com/openembedded/openembedded-core/94f780e889f194b67a48587ac68b3200288bee10/meta/recipes-connectivity/libnss-mdns/libnss-mdns/0001-check-for-nss.h.patch"; + sha256 = "1l1kjbdw8z31br4vib3l5b85jy7kxin760a2f24lww8v6lqdpgds"; + }) + ]; meta = { diff --git a/pkgs/tools/networking/ntp/default.nix b/pkgs/tools/networking/ntp/default.nix index c8af08a3a30d..92a6005e2a66 100644 --- a/pkgs/tools/networking/ntp/default.nix +++ b/pkgs/tools/networking/ntp/default.nix @@ -1,11 +1,4 @@ -{ stdenv, lib, fetchurl, openssl, perl, libcap ? null, libseccomp ? null, pps-tools }: - -assert stdenv.isLinux -> libcap != null; -assert stdenv.isLinux -> libseccomp != null; - -let - withSeccomp = stdenv.isLinux && (stdenv.isi686 || stdenv.isx86_64); -in +{ stdenv, lib, fetchurl, openssl, perl, pps-tools, libcap }: stdenv.mkDerivation rec { pname = "ntp"; @@ -16,10 +9,6 @@ stdenv.mkDerivation rec { sha256 = "06cwhimm71safmwvp6nhxp6hvxsg62whnbgbgiflsqb8mgg40n7n"; }; - # The hardcoded list of allowed system calls for seccomp is - # insufficient for NixOS, add more to make it work (issue #21136). - patches = [ ./seccomp.patch ]; - configureFlags = [ "--sysconfdir=/etc" "--localstatedir=/var" @@ -27,12 +16,10 @@ stdenv.mkDerivation rec { "--with-openssl-incdir=${openssl.dev}/include" "--enable-ignore-dns-errors" "--with-yielding-select=yes" - ] ++ lib.optional stdenv.isLinux "--enable-linuxcaps" - ++ lib.optional withSeccomp "--enable-libseccomp"; + ] ++ lib.optional stdenv.isLinux "--enable-linuxcaps"; - buildInputs = [ libcap openssl perl ] - ++ lib.optional withSeccomp libseccomp - ++ lib.optional stdenv.isLinux pps-tools; + buildInputs = [ openssl perl ] + ++ lib.optionals stdenv.isLinux [ pps-tools libcap ]; hardeningEnable = [ "pie" ]; diff --git a/pkgs/tools/networking/ntp/seccomp.patch b/pkgs/tools/networking/ntp/seccomp.patch deleted file mode 100644 index c75536dac7fb..000000000000 --- a/pkgs/tools/networking/ntp/seccomp.patch +++ /dev/null @@ -1,57 +0,0 @@ -From 881e427f3236046466bdb8235edf86e6dfa34391 Mon Sep 17 00:00:00 2001 -From: Michael Bishop <cleverca22@gmail.com> -Date: Mon, 11 Jun 2018 08:30:48 -0300 -Subject: [PATCH] fix the seccomp filter to include a few previously missed - syscalls - ---- - ntpd/ntpd.c | 8 ++++++++ - 1 file changed, 8 insertions(+) - -diff --git a/ntpd/ntpd.c b/ntpd/ntpd.c -index 2c7f02ec5..4c59dc2ba 100644 ---- a/ntpd/ntpd.c -+++ b/ntpd/ntpd.c -@@ -1140,10 +1140,12 @@ int scmp_sc[] = { - SCMP_SYS(close), - SCMP_SYS(connect), - SCMP_SYS(exit_group), -+ SCMP_SYS(fcntl), - SCMP_SYS(fstat), - SCMP_SYS(fsync), - SCMP_SYS(futex), - SCMP_SYS(getitimer), -+ SCMP_SYS(getpid), - SCMP_SYS(getsockname), - SCMP_SYS(ioctl), - SCMP_SYS(lseek), -@@ -1162,6 +1164,8 @@ int scmp_sc[] = { - SCMP_SYS(sendto), - SCMP_SYS(setitimer), - SCMP_SYS(setsid), -+ SCMP_SYS(setsockopt), -+ SCMP_SYS(openat), - SCMP_SYS(socket), - SCMP_SYS(stat), - SCMP_SYS(time), -@@ -1178,9 +1182,11 @@ int scmp_sc[] = { - SCMP_SYS(clock_settime), - SCMP_SYS(close), - SCMP_SYS(exit_group), -+ SCMP_SYS(fcntl), - SCMP_SYS(fsync), - SCMP_SYS(futex), - SCMP_SYS(getitimer), -+ SCMP_SYS(getpid), - SCMP_SYS(madvise), - SCMP_SYS(mmap), - SCMP_SYS(mmap2), -@@ -1194,6 +1200,8 @@ int scmp_sc[] = { - SCMP_SYS(select), - SCMP_SYS(setitimer), - SCMP_SYS(setsid), -+ SCMP_SYS(setsockopt), -+ SCMP_SYS(openat), - SCMP_SYS(sigprocmask), - SCMP_SYS(sigreturn), - SCMP_SYS(socketcall), diff --git a/pkgs/tools/networking/oapi-codegen/default.nix b/pkgs/tools/networking/oapi-codegen/default.nix index 41e80a3e12cb..47d243782c74 100644 --- a/pkgs/tools/networking/oapi-codegen/default.nix +++ b/pkgs/tools/networking/oapi-codegen/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "oapi-codegen"; - version = "1.8.2"; + version = "1.8.3"; src = fetchFromGitHub { owner = "deepmap"; repo = pname; rev = "v${version}"; - sha256 = "sha256-8hyRuGKspWqv+uBeSz4i12Grl83EQVPWB1weEVf9yhA="; + sha256 = "sha256-VAtfJ1PXTSPMoQ4NqX0GcZMyi15edxWj6Xsj6h1b7hc="; }; - vendorSha256 = "sha256-YCZzIsu1mMAAjLGHISrDkfY4Lx0az2SZV8bnZOMalx8="; + vendorSha256 = "sha256-s6+Rs+G4z5fcmUiwGjeDoQYKWJz0a/PCejfKyn8WWxs="; # Tests use network doCheck = false; diff --git a/pkgs/tools/networking/offlineimap/default.nix b/pkgs/tools/networking/offlineimap/default.nix index 5dc789e0dc58..98aabadf6da3 100644 --- a/pkgs/tools/networking/offlineimap/default.nix +++ b/pkgs/tools/networking/offlineimap/default.nix @@ -1,6 +1,6 @@ { lib , fetchFromGitHub -, python2Packages +, python3 , asciidoc , cacert , docbook_xsl @@ -9,15 +9,15 @@ , libxslt }: -python2Packages.buildPythonApplication rec { - version = "7.3.4"; +python3.pkgs.buildPythonApplication rec { pname = "offlineimap"; + version = "8.0.0"; src = fetchFromGitHub { owner = "OfflineIMAP"; - repo = "offlineimap"; + repo = "offlineimap3"; rev = "v${version}"; - sha256 = "sha256-sra2H0+5+LAIU3+uJnii+AYA05nuDyKVMW97rbaFOfI="; + sha256 = "0y3giaz9i8vvczlxkbwymfkn3vi9fv599dy4pc2pn2afxsl4mg2w"; }; nativeBuildInputs = [ @@ -28,11 +28,14 @@ python2Packages.buildPythonApplication rec { libxslt ]; - propagatedBuildInputs = with python2Packages; [ - six + propagatedBuildInputs = with python3.pkgs; [ + certifi + distro + imaplib2 kerberos - rfc6555 pysocks + rfc6555 + urllib3 ]; postPatch = '' @@ -40,7 +43,7 @@ python2Packages.buildPythonApplication rec { sed -i docs/Makefile -e "s|a2x -v -d |a2x -L -v -d |" # Provide CA certificates (Used when "sslcacertfile = OS-DEFAULT" is configured") - sed -i offlineimap/utils/distro.py -e '/def get_os_sslcertfile():/a\ \ \ \ return "${cacert}/etc/ssl/certs/ca-bundle.crt"' + sed -i offlineimap/utils/distro_utils.py -e '/def get_os_sslcertfile():/a\ \ \ \ return "${cacert}/etc/ssl/certs/ca-bundle.crt"' ''; postInstall = '' @@ -52,6 +55,10 @@ python2Packages.buildPythonApplication rec { # Test requires credentials doCheck = false; + pythonImportsCheck = [ + "offlineimap" + ]; + meta = with lib; { description = "Synchronize emails between two repositories, so that you can read the same mailbox from multiple computers"; homepage = "http://offlineimap.org"; diff --git a/pkgs/tools/networking/openvpn/openvpn_learnaddress.nix b/pkgs/tools/networking/openvpn/openvpn_learnaddress.nix index 2120679fef3e..514491c2be21 100644 --- a/pkgs/tools/networking/openvpn/openvpn_learnaddress.nix +++ b/pkgs/tools/networking/openvpn/openvpn_learnaddress.nix @@ -1,7 +1,8 @@ -{ lib, stdenv, fetchgit, makeWrapper, coreutils, gawk, util-linux }: +{ lib, stdenv, fetchgit, makeWrapper, coreutils, gawk, util-linux }: stdenv.mkDerivation { - name = "openvpn-learnaddress-19b03c3"; + pname = "openvpn-learnaddress"; + version = "unstable-2013-10-21"; src = fetchgit { url = "https://gist.github.com/4058733.git"; diff --git a/pkgs/tools/networking/openvpn/update-resolv-conf.nix b/pkgs/tools/networking/openvpn/update-resolv-conf.nix index d71ab72901bc..e8533a214af1 100644 --- a/pkgs/tools/networking/openvpn/update-resolv-conf.nix +++ b/pkgs/tools/networking/openvpn/update-resolv-conf.nix @@ -3,8 +3,10 @@ let binPath = lib.makeBinPath [ coreutils openresolv systemd ]; -in stdenv.mkDerivation { - name = "update-resolv-conf-2017-06-21"; +in +stdenv.mkDerivation { + pname = "update-resolv-conf"; + version = "unstable-2017-06-21"; src = fetchFromGitHub { owner = "masterkorp"; diff --git a/pkgs/tools/networking/spoof-mac/default.nix b/pkgs/tools/networking/spoof-mac/default.nix index fdd282fa8b5f..3b7bbd0d52a2 100644 --- a/pkgs/tools/networking/spoof-mac/default.nix +++ b/pkgs/tools/networking/spoof-mac/default.nix @@ -16,6 +16,8 @@ buildPythonPackage rec { # No tests doCheck = false; + pythonImportsCheck = [ "spoofmac" ]; + meta = with lib; { description = "Change your MAC address for debugging purposes"; homepage = "https://github.com/feross/SpoofMAC"; diff --git a/pkgs/tools/networking/sshoogr/default.nix b/pkgs/tools/networking/sshoogr/default.nix index f3c9c1a31fb8..e20978c277d9 100644 --- a/pkgs/tools/networking/sshoogr/default.nix +++ b/pkgs/tools/networking/sshoogr/default.nix @@ -5,7 +5,7 @@ stdenv.mkDerivation rec { version = "0.9.26"; src = fetchzip { - url = "https://repo1.maven.org/maven2/com/aestasit/infrastructure/${pname}/${pname}/${version}/${pname}-${version}.zip"; + url = "mirror://maven/com/aestasit/infrastructure/${pname}/${pname}/${version}/${pname}-${version}.zip"; sha256 = "134qlx90y82g1rfxhyn12z9r2imm1l3fz09hrrn3pgcdcq5jz2s1"; }; diff --git a/pkgs/tools/networking/swagger-codegen/default.nix b/pkgs/tools/networking/swagger-codegen/default.nix index f2847703bdba..37e35e95e7f4 100644 --- a/pkgs/tools/networking/swagger-codegen/default.nix +++ b/pkgs/tools/networking/swagger-codegen/default.nix @@ -11,7 +11,7 @@ stdenv.mkDerivation rec { ]; src = fetchurl { - url = "https://repo1.maven.org/maven2/io/swagger/${pname}-cli/${version}/${jarfilename}"; + url = "mirror://maven/io/swagger/${pname}-cli/${version}/${jarfilename}"; sha256 = "04wl5k8k1ziqz7k5w0g7i6zdfn41pbh3k0m8vq434k1886inf8yn"; }; diff --git a/pkgs/tools/networking/swagger-codegen3/default.nix b/pkgs/tools/networking/swagger-codegen3/default.nix index 2981196ef7c0..9114df94b540 100644 --- a/pkgs/tools/networking/swagger-codegen3/default.nix +++ b/pkgs/tools/networking/swagger-codegen3/default.nix @@ -11,7 +11,7 @@ stdenv.mkDerivation rec { ]; src = fetchurl { - url = "https://repo1.maven.org/maven2/io/swagger/codegen/v3/${pname}-cli/${version}/${jarfilename}"; + url = "mirror://maven/io/swagger/codegen/v3/${pname}-cli/${version}/${jarfilename}"; sha256 = "sha256-sEwqUmtWaoBV0QmdP8ibm3neqWHk7+tWLAuO2FaCUtQ="; }; diff --git a/pkgs/tools/networking/telepresence2/default.nix b/pkgs/tools/networking/telepresence2/default.nix index e7ae903e8682..9a2e1b4bbc78 100644 --- a/pkgs/tools/networking/telepresence2/default.nix +++ b/pkgs/tools/networking/telepresence2/default.nix @@ -1,17 +1,27 @@ -{ lib, buildGoModule, fetchFromGitHub }: +{ lib, buildGoModule, fetchFromGitHub, kubernetes-helm }: buildGoModule rec { pname = "telepresence2"; - version = "2.4.0"; + version = "2.4.6"; src = fetchFromGitHub { owner = "telepresenceio"; repo = "telepresence"; rev = "v${version}"; - sha256 = "1v2jkhdlyq37akqyhb8mwsh7rjdv2fjw8kyzys3dv04k3dy5sl0f"; + sha256 = "09w7yk7jk5m6clq3drbgdr61w60b21jmfd635brfahms8pykmmzl"; }; - vendorSha256 = "1snmp461h8driy1w1xggk669yxl0sjl1m9pbqm7dwk44yb94zi1q"; + # The Helm chart is go:embed'ed as a tarball in the binary. + # That tarball is generated by running ./build-aux/package_embedded_chart/main.go, + # which tries to invoke helm from tools/bin/helm. + # Oh well… + preBuild = '' + mkdir -p tools/bin + ln -sfn ${kubernetes-helm}/bin/helm tools/bin/helm + go run ./build-aux/package_embedded_chart/main.go ${src.rev} + ''; + + vendorSha256 = "0przkcqaf56a0sgan2xxqfpbs9nbmq4brwdv1qnag7i9myzvixxb"; ldflags = [ "-s" "-w" "-X=github.com/telepresenceio/telepresence/v2/pkg/version.Version=${src.rev}" diff --git a/pkgs/tools/networking/termscp/default.nix b/pkgs/tools/networking/termscp/default.nix index 3bc12747b746..58bbfe5e46c6 100644 --- a/pkgs/tools/networking/termscp/default.nix +++ b/pkgs/tools/networking/termscp/default.nix @@ -5,6 +5,7 @@ , openssl , pkg-config , rustPlatform +, Foundation , Security , stdenv }: @@ -31,6 +32,7 @@ rustPlatform.buildRustPackage rec { libssh openssl ] ++ lib.optional stdenv.isDarwin [ + Foundation Security ]; diff --git a/pkgs/tools/networking/tinyssh/default.nix b/pkgs/tools/networking/tinyssh/default.nix new file mode 100644 index 000000000000..9bfa8aa3ab53 --- /dev/null +++ b/pkgs/tools/networking/tinyssh/default.nix @@ -0,0 +1,28 @@ +{ lib, stdenv, fetchFromGitHub }: + +stdenv.mkDerivation rec { + pname = "tinyssh"; + version = "20210601"; + + src = fetchFromGitHub { + owner = "janmojzis"; + repo = "tinyssh"; + rev = version; + sha256 = "sha256-+THoPiD6dW5ZuiQmmLckOJGyjhzdF3qF0DgC51zjGY8="; + }; + + preConfigure = '' + echo /bin > conf-bin + echo /share/man > conf-man + ''; + + DESTDIR = placeholder "out"; + + meta = with lib; { + description = "minimalistic SSH server"; + homepage = "https://tinyssh.org"; + license = licenses.publicDomain; + platforms = platforms.unix; + maintainers = [ maintainers.kaction ]; + }; +} diff --git a/pkgs/tools/networking/tox-node/default.nix b/pkgs/tools/networking/tox-node/default.nix index 5ed6aa632d33..80d20a7ce7f7 100644 --- a/pkgs/tools/networking/tox-node/default.nix +++ b/pkgs/tools/networking/tox-node/default.nix @@ -1,6 +1,7 @@ { lib, rustPlatform, fetchFromGitHub , libsodium, openssl , pkg-config +, fetchpatch }: with rustPlatform; @@ -16,6 +17,14 @@ buildRustPackage rec { sha256 = "sha256-tB6v2NEBdTNHf89USdQOr/pV0mbxxb8ftOYPPJMvz5Y="; }; + cargoPatches = [ + # update cargo lock + (fetchpatch { + url = "https://github.com/tox-rs/tox-node/commit/63712d49d84e55df7bba9710e129780bbc636de3.patch"; + sha256 = "sha256-jI6b5IHsAuGuM+7sPCdFnOOuV6K9rBmc5QqU5x72Fl0="; + }) + ]; + buildInputs = [ libsodium openssl ]; nativeBuildInputs = [ pkg-config ]; @@ -23,13 +32,13 @@ buildRustPackage rec { doCheck = false; - cargoSha256 = "sha256-J/0KO33vZmOvm6V7qCXInuAJTbRqyy5/qj6p6dEmoas="; + cargoSha256 = "sha256-yHsYjKJJNjepvcNszj4XQ0DbOY3AEJMZOnz0cAiwO1A="; meta = with lib; { description = "A server application to run tox node written in pure Rust"; homepage = "https://github.com/tox-rs/tox-node"; license = [ licenses.gpl3Plus ]; platforms = platforms.linux; - maintainers = with maintainers; [ suhr ]; + maintainers = with maintainers; [ suhr kurnevsky ]; }; } diff --git a/pkgs/tools/networking/vpn-slice/default.nix b/pkgs/tools/networking/vpn-slice/default.nix index 9511c214c08c..40ab66255b36 100644 --- a/pkgs/tools/networking/vpn-slice/default.nix +++ b/pkgs/tools/networking/vpn-slice/default.nix @@ -1,20 +1,26 @@ -{ lib, buildPythonApplication, python3Packages, fetchFromGitHub }: +{ lib, buildPythonApplication, nix-update-script, python3Packages, fetchFromGitHub }: buildPythonApplication rec { pname = "vpn-slice"; - version = "0.14"; + version = "0.15"; src = fetchFromGitHub { owner = "dlenski"; repo = pname; rev = "v${version}"; - sha256 = "1z2mdl3arzl95zrj4ir57f762gcimmmq5nk91j679cshxz4snxyr"; + sha256 = "sha256-9JnRuJkpcgW1cEgJPiqFDYotNSCl7XcmbHS6D4E13gM="; }; propagatedBuildInputs = with python3Packages; [ setproctitle dnspython ]; doCheck = false; + passthru = { + updateScript = nix-update-script { + attrPath = pname; + }; + }; + meta = with lib; { homepage = "https://github.com/dlenski/vpn-slice"; description = diff --git a/pkgs/tools/networking/vpnc/default.nix b/pkgs/tools/networking/vpnc/default.nix index 6928bacd6ce7..f67d29f09d49 100644 --- a/pkgs/tools/networking/vpnc/default.nix +++ b/pkgs/tools/networking/vpnc/default.nix @@ -14,7 +14,7 @@ stdenv.mkDerivation { rm -r $sourceRoot/{trunk,branches,tags} ''; - patches = [ ./makefile.patch ./no_default_route_when_netmask.patch ]; + patches = [ ./no_default_route_when_netmask.patch ]; # The `etc/vpnc/vpnc-script' script relies on `which' and on # `ifconfig' as found in net-tools (not GNU Inetutils). @@ -23,6 +23,16 @@ stdenv.mkDerivation { nativeBuildInputs = [ makeWrapper ]; buildInputs = [libgcrypt perl openssl ]; + makeFlags = [ + "PREFIX=$(out)" + "ETCDIR=$(out)/etc/vpnc" + "SCRIPT_PATH=$(out)/etc/vpnc/vpnc-script" + ]; + + postPatch = '' + patchShebangs makeman.pl + ''; + preConfigure = '' sed -i 's|^#OPENSSL|OPENSSL|g' Makefile @@ -33,9 +43,6 @@ stdenv.mkDerivation { substituteInPlace "config.c" \ --replace "/etc/vpnc/vpnc-script" "$out/etc/vpnc/vpnc-script" - - substituteInPlace "pcf2vpnc" \ - --replace "/usr/bin/perl" "${perl}/bin/perl" ''; postInstall = '' diff --git a/pkgs/tools/networking/vpnc/makefile.patch b/pkgs/tools/networking/vpnc/makefile.patch deleted file mode 100644 index 89a8cd6da952..000000000000 --- a/pkgs/tools/networking/vpnc/makefile.patch +++ /dev/null @@ -1,22 +0,0 @@ ---- vpnc-0.5.1.orig/Makefile 2008-02-10 22:22:43.000000000 +0100 -+++ vpnc-0.5.1/Makefile 2008-02-10 22:22:32.000000000 +0100 -@@ -20,8 +20,8 @@ - # $Id: Makefile 236 2007-09-05 20:40:59Z Joerg Mayer $ - - DESTDIR= --PREFIX=/usr/local --ETCDIR=/etc/vpnc -+PREFIX=$(out) -+ETCDIR=$(out)/etc/vpnc - BINDIR=$(PREFIX)/bin - SBINDIR=$(PREFIX)/sbin - MANDIR=$(PREFIX)/share/man -@@ -71,7 +71,7 @@ - $(CC) -o $@ $^ $(LDFLAGS) - - vpnc.8 : vpnc.8.template makeman.pl vpnc -- ./makeman.pl -+ perl makeman.pl - - cisco-decrypt : cisco-decrypt.o config.o supp.o sysdep.o vpnc-debug.o - $(CC) -o $@ $^ $(LDFLAGS) diff --git a/pkgs/tools/networking/yggdrasil/default.nix b/pkgs/tools/networking/yggdrasil/default.nix index bb17691cbad4..0284e5117d31 100644 --- a/pkgs/tools/networking/yggdrasil/default.nix +++ b/pkgs/tools/networking/yggdrasil/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "yggdrasil"; - version = "0.4.0"; + version = "0.4.2"; src = fetchFromGitHub { owner = "yggdrasil-network"; repo = "yggdrasil-go"; rev = "v${version}"; - sha256 = "sha256-sMcbOTLdmAXp3U2XeNM0hrwOTjzr+9B6IvAaVbjhuFY="; + sha256 = "sha256-5bx9KGZD7m+FX9hWU1pu8uJ2FU+P/TetRS3kJL5jhhI="; }; vendorSha256 = "sha256-QQN8ePOQ7DT9KeuY4ohFuPtocuinh3Y3us6QMnCQ4gc="; @@ -33,6 +33,6 @@ buildGoModule rec { "An experiment in scalable routing as an encrypted IPv6 overlay network"; homepage = "https://yggdrasil-network.github.io/"; license = licenses.lgpl3; - maintainers = with maintainers; [ ehmry gazally lassulus ]; + maintainers = with maintainers; [ bbigras ehmry gazally lassulus ]; }; } diff --git a/pkgs/tools/networking/zerotierone/default.nix b/pkgs/tools/networking/zerotierone/default.nix index 7344b12180e6..d86eb8c88657 100644 --- a/pkgs/tools/networking/zerotierone/default.nix +++ b/pkgs/tools/networking/zerotierone/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "zerotierone"; - version = "1.8.1"; + version = "1.8.2"; src = fetchFromGitHub { owner = "zerotier"; repo = "ZeroTierOne"; rev = version; - sha256 = "sha256-nr5qvo/SLzQ16B/83lCzlQ5zduPGxOhfqWat/Grsf/Q="; + sha256 = "sha256-Itq06zE2AVQ1HSUEQdNUuvEazfU56Hs86T0DEVuF8d4="; }; preConfigure = '' diff --git a/pkgs/tools/nix/info/info.sh b/pkgs/tools/nix/info/info.sh index f108962b3bad..6708a541f3d9 100755 --- a/pkgs/tools/nix/info/info.sh +++ b/pkgs/tools/nix/info/info.sh @@ -70,7 +70,7 @@ nixev() { } desc_system() { - nixev '(import <nixpkgs> {}).system' + nixev '(import <nixpkgs> {}).stdenv.hostPlatform.system' } desc_host_os() { diff --git a/pkgs/tools/nix/nixos-generators/default.nix b/pkgs/tools/nix/nixos-generators/default.nix index 01e12e9fd58f..e20f36b1ef99 100644 --- a/pkgs/tools/nix/nixos-generators/default.nix +++ b/pkgs/tools/nix/nixos-generators/default.nix @@ -2,12 +2,12 @@ stdenv.mkDerivation rec { pname = "nixos-generators"; - version = "1.4.0"; + version = "1.5.0"; src = fetchFromGitHub { owner = "nix-community"; repo = "nixos-generators"; rev = version; - sha256 = "1kn2anp8abpi0n3p7j0yczbpy7mdhk8rv84ywyghqdvf2wjmnlnp"; + sha256 = "sha256-Icz/2Jl3eO4JnatU1iAFiMzVAQR9IDrsiqhOIvMkCS4="; }; nativeBuildInputs = [ makeWrapper ]; installFlags = [ "PREFIX=$(out)" ]; diff --git a/pkgs/tools/nix/statix/default.nix b/pkgs/tools/nix/statix/default.nix index c78ace218c08..3e56fa4fb608 100644 --- a/pkgs/tools/nix/statix/default.nix +++ b/pkgs/tools/nix/statix/default.nix @@ -4,16 +4,16 @@ rustPlatform.buildRustPackage rec { pname = "statix"; # also update version of the vim plugin in pkgs/misc/vim-plugins/overrides.nix # the version can be found in flake.nix of the source code - version = "0.3.5"; + version = "0.4.0"; src = fetchFromGitHub { owner = "nerdypepper"; repo = pname; rev = "v${version}"; - sha256 = "sha256-vJvHmg6X/B6wQYjeX1FZC4MDGo0HkKbTmQH+l4tZAwg="; + sha256 = "sha256-wqkhtAOO6pKLjUUnDbVFwzm6mbXhP/4iJU7ZKtDKrE8="; }; - cargoSha256 = "sha256-OfLpnVe1QIjpjpD4ticG/7AxPGFMMjBWN3DdLZq6pA8="; + cargoSha256 = "sha256-e20POz9ZvuT0S+YG+9x7hcudhXQpOR4rVSFJbz76OI0="; cargoBuildFlags = lib.optionals withJson [ "--features" "json" ]; diff --git a/pkgs/tools/package-management/auditwheel/default.nix b/pkgs/tools/package-management/auditwheel/default.nix index 7c633698e389..ccb85080824c 100644 --- a/pkgs/tools/package-management/auditwheel/default.nix +++ b/pkgs/tools/package-management/auditwheel/default.nix @@ -52,5 +52,6 @@ python3.pkgs.buildPythonApplication rec { bsd3 # from https://sources.gentoo.org/cgi-bin/viewvc.cgi/gentoo-projects/pax-utils/lddtree.py ]; maintainers = with maintainers; [ davhau ]; + platforms = platforms.linux; }; } diff --git a/pkgs/tools/package-management/cargo-edit/default.nix b/pkgs/tools/package-management/cargo-edit/default.nix index de5abca29bec..c5e60fb88fd6 100644 --- a/pkgs/tools/package-management/cargo-edit/default.nix +++ b/pkgs/tools/package-management/cargo-edit/default.nix @@ -1,26 +1,26 @@ -{ stdenv -, lib +{ lib , rustPlatform , fetchFromGitHub , pkg-config , openssl +, zlib +, stdenv , libiconv , Security -, zlib }: rustPlatform.buildRustPackage rec { pname = "cargo-edit"; - version = "0.7.0"; + version = "0.8.0"; src = fetchFromGitHub { owner = "killercup"; repo = pname; rev = "v${version}"; - hash = "sha256:0fh1lq793k4ddpqsf2av447hcb74vcq53afkm3g4672k48mjjw1y"; + hash = "sha256-n9Ei1kpbDqOogNJJVvg9DRAPMVGNChCGGiuCVsuK3/8="; }; - cargoSha256 = "0ah3zjx36ibax4gi66g13finh4m2k0aidxkg2nxx1c2aqj847mm1"; + cargoSha256 = "sha256-6546jD+zDoScrJmpw5xtNdWeIPJ9Ma0bcIdnI1kFmu8="; nativeBuildInputs = [ pkg-config ]; @@ -34,7 +34,8 @@ rustPlatform.buildRustPackage rec { meta = with lib; { description = "A utility for managing cargo dependencies from the command line"; homepage = "https://github.com/killercup/cargo-edit"; + changelog = "https://github.com/killercup/cargo-edit/blob/v${version}/CHANGELOG.md"; license = with licenses; [ asl20 /* or */ mit ]; - maintainers = with maintainers; [ gerschtli jb55 Br1ght0ne killercup ]; + maintainers = with maintainers; [ Br1ght0ne figsoda gerschtli jb55 killercup ]; }; } diff --git a/pkgs/tools/package-management/cargo-outdated/default.nix b/pkgs/tools/package-management/cargo-outdated/default.nix index beb04041861e..106622706f00 100644 --- a/pkgs/tools/package-management/cargo-outdated/default.nix +++ b/pkgs/tools/package-management/cargo-outdated/default.nix @@ -1,22 +1,21 @@ -{ lib, stdenv, fetchFromGitHub, rustPlatform, pkg-config, openssl, libiconv, curl, darwin }: +{ lib, stdenv, fetchCrate, rustPlatform, pkg-config, openssl, libiconv, curl, darwin }: rustPlatform.buildRustPackage rec { pname = "cargo-outdated"; - version = "0.9.17"; + version = "0.9.18"; - src = fetchFromGitHub { - owner = "kbknapp"; - repo = pname; - rev = "v${version}"; - sha256 = "sha256-Ian/vXGoPHecguQUp2IUgdLW6Ll8OdCA2W0WmoYPDrI="; + src = fetchCrate { + inherit pname version; + sha256 = "19r4nv28iq4cmzs5j127qgvdf7y3pfmgjp6jzzbb8b5xj7w06jhl"; }; - cargoSha256 = "sha256-eDu1dAs543AryUEsCY9COHrvuamQocCk0nBXDIdFmYs="; + cargoSha256 = "1rf3sxprra9s76iip2xf82kclgs83fhnlx9ykl9hhn2y0z8r3342"; nativeBuildInputs = [ pkg-config ]; buildInputs = [ openssl ] ++ lib.optionals stdenv.isDarwin [ darwin.apple_sdk.frameworks.Security + darwin.apple_sdk.frameworks.SystemConfiguration libiconv curl ]; diff --git a/pkgs/tools/package-management/nfpm/default.nix b/pkgs/tools/package-management/nfpm/default.nix index 9331bdba6843..6f30a76bcd98 100644 --- a/pkgs/tools/package-management/nfpm/default.nix +++ b/pkgs/tools/package-management/nfpm/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "nfpm"; - version = "2.6.0"; + version = "2.7.1"; src = fetchFromGitHub { owner = "goreleaser"; repo = pname; rev = "v${version}"; - sha256 = "sha256-GKdfi4hdvpB9VY8VqGYNjTezmPxotrzL/XSm1H5VLQs="; + sha256 = "sha256-GKX+5N8BPm4VmI10mzPJORjwLpuOLLjO+Q+RNelKUVI="; }; - vendorSha256 = "sha256-APF6WHuH+YzgX3GbkSzZArGdiE7xPsLljEzCu96BvO4="; + vendorSha256 = "sha256-NPMJ5sCdbfDraRoK5fSdaxMpYS2i8ir0cklGDoHNLAY="; doCheck = false; diff --git a/pkgs/tools/package-management/nix-bundle/default.nix b/pkgs/tools/package-management/nix-bundle/default.nix index 6eee4adf1d42..a32f788bf4dc 100644 --- a/pkgs/tools/package-management/nix-bundle/default.nix +++ b/pkgs/tools/package-management/nix-bundle/default.nix @@ -1,4 +1,13 @@ -{ stdenv, lib, fetchFromGitHub, nix, makeWrapper, coreutils, gnutar, gzip, bzip2 }: +{ lib +, stdenv +, fetchFromGitHub +, bzip2 +, coreutils +, gnutar +, gzip +, makeWrapper +, nix +}: stdenv.mkDerivation rec { pname = "nix-bundle"; @@ -13,25 +22,40 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ makeWrapper ]; - # coreutils, gnutar is actually needed by nix for bootstrap - buildInputs = [ nix coreutils gnutar gzip bzip2 ]; - - binPath = lib.makeBinPath [ nix coreutils gnutar gzip bzip2 ]; + # coreutils, gnutar are needed by nix for bootstrap + buildInputs = [ + bzip2 + coreutils + gnutar + gzip + nix + ]; makeFlags = [ "PREFIX=$(out)" ]; postInstall = '' mkdir -p $out/bin makeWrapper $out/share/nix-bundle/nix-bundle.sh $out/bin/nix-bundle \ - --prefix PATH : ${binPath} - cp $out/share/nix-bundle/nix-run.sh $out/bin/nix-run + --prefix PATH : ${lib.makeBinPath buildInputs} + ln -s $out/share/nix-bundle/nix-run.sh $out/bin/nix-run ''; meta = with lib; { + homepage = "https://github.com/matthewbauer/nix-bundle"; + description = "Create bundles from Nixpkgs attributes"; + longDescription = '' + nix-bundle is a way to package Nix attributes into single-file + executables. + + Benefits: + - Single-file output + - Can be run by non-root users + - No runtime + - Distro agnostic + - No installation + ''; + license = licenses.mit; maintainers = [ maintainers.matthewbauer ]; platforms = platforms.all; - description = "Create bundles from Nixpkgs attributes"; - license = licenses.mit; - homepage = "https://github.com/matthewbauer/nix-bundle"; }; } diff --git a/pkgs/tools/package-management/nix-du/default.nix b/pkgs/tools/package-management/nix-du/default.nix index 09a5ddbe872a..e0f2a192c232 100644 --- a/pkgs/tools/package-management/nix-du/default.nix +++ b/pkgs/tools/package-management/nix-du/default.nix @@ -12,16 +12,16 @@ rustPlatform.buildRustPackage rec { pname = "nix-du"; - version = "0.4.0"; + version = "0.4.1"; src = fetchFromGitHub { owner = "symphorien"; repo = "nix-du"; rev = "v${version}"; - sha256 = "0nl451xfby8krxl2wyn91mm0rvacj1718qbqw6k56dwsqlnnxmx0"; + sha256 = "0v6hixj81aa6g3sddny46i0yqaaqv6krp5xadj0xz1g77cb8xy2w"; }; - cargoSha256 = "0swdlp3qdisr8gxihg5syplzssggx9avmdb2w70056436046gs1r"; + cargoSha256 = "11jaks6adsvrvxlqqw3glvn4ff7xh9j35ayfrl89rb4achvqp7xn"; doCheck = true; checkInputs = [ nix graphviz ]; diff --git a/pkgs/tools/package-management/nix-update/default.nix b/pkgs/tools/package-management/nix-update/default.nix index 1345e2caa406..fd3b4a5a3e46 100644 --- a/pkgs/tools/package-management/nix-update/default.nix +++ b/pkgs/tools/package-management/nix-update/default.nix @@ -1,7 +1,7 @@ { lib , buildPythonApplication , fetchFromGitHub -, nixUnstable +, nix , nix-prefetch , nixpkgs-fmt , nixpkgs-review @@ -19,7 +19,7 @@ buildPythonApplication rec { }; makeWrapperArgs = [ - "--prefix" "PATH" ":" (lib.makeBinPath [ nixUnstable nix-prefetch nixpkgs-fmt nixpkgs-review ]) + "--prefix" "PATH" ":" (lib.makeBinPath [ nix nix-prefetch nixpkgs-fmt nixpkgs-review ]) ]; checkPhase = '' diff --git a/pkgs/tools/package-management/nix/default.nix b/pkgs/tools/package-management/nix/default.nix index db9b2c9465fa..fc55902ce5fc 100644 --- a/pkgs/tools/package-management/nix/default.nix +++ b/pkgs/tools/package-management/nix/default.nix @@ -77,17 +77,12 @@ common = propagatedBuildInputs = [ boehmgc ]; - # Seems to be required when using std::atomic with 64-bit types - NIX_LDFLAGS = - # need to list libraries individually until + NIX_LDFLAGS = lib.optionals (!is24) [ # https://github.com/NixOS/nix/commit/3e85c57a6cbf46d5f0fe8a89b368a43abd26daba - # is in a release - lib.optionalString enableStatic "-lssl -lbrotlicommon -lssh2 -lz -lnghttp2 -lcrypto" - - # need to detect it here until + (lib.optionalString enableStatic "-lssl -lbrotlicommon -lssh2 -lz -lnghttp2 -lcrypto") # https://github.com/NixOS/nix/commits/74b4737d8f0e1922ef5314a158271acf81cd79f8 - # is in a release - + lib.optionalString (stdenv.hostPlatform.system == "armv5tel-linux" || stdenv.hostPlatform.system == "armv6l-linux") "-latomic"; + (lib.optionalString (stdenv.hostPlatform.system == "armv5tel-linux" || stdenv.hostPlatform.system == "armv6l-linux") "-latomic") + ]; preConfigure = # Copy libboost_context so we don't get all of Boost in our closure. @@ -152,11 +147,11 @@ common = export TMPDIR=$NIX_BUILD_TOP ''; - separateDebugInfo = stdenv.isLinux; + separateDebugInfo = stdenv.isLinux && (is24 -> !enableStatic); enableParallelBuilding = true; - meta = { + meta = with lib; { description = "Powerful package manager that makes package management reliable and reproducible"; longDescription = '' Nix is a powerful package manager for Linux and other Unix systems that @@ -166,10 +161,10 @@ common = environments. ''; homepage = "https://nixos.org/"; - license = lib.licenses.lgpl2Plus; - maintainers = [ lib.maintainers.eelco ]; - platforms = lib.platforms.unix; - outputsToInstall = [ "out" ] ++ lib.optional enableDocumentation "man"; + license = licenses.lgpl2Plus; + maintainers = with maintainers; [ eelco lovesegfault ]; + platforms = platforms.unix; + outputsToInstall = [ "out" ] ++ optional enableDocumentation "man"; }; passthru = { @@ -218,7 +213,9 @@ in rec { nix = nixStable; - nixStable = callPackage common (rec { + nixStable = nix_2_4; + + nix_2_3 = callPackage common (rec { pname = "nix"; version = "2.3.16"; src = fetchurl { @@ -233,13 +230,13 @@ in rec { nix_2_4 = callPackage common (rec { pname = "nix"; - version = "2.4pre-rc1"; + version = "2.4"; src = fetchFromGitHub { owner = "NixOS"; repo = "nix"; rev = version; - sha256 = "sha256-KOb8etMm5LksvT2l+CkvqzMO1bgmo9tJmyaNh0LvaR8="; + sha256 = "sha256-op48CCDgLHK0qV1Batz4Ln5FqBiRjlE6qHTiZgt3b6k="; }; boehmgc = boehmgc_nixUnstable; diff --git a/pkgs/tools/package-management/nixpkgs-review/default.nix b/pkgs/tools/package-management/nixpkgs-review/default.nix index 7c6e9283d624..ea2b565be27e 100644 --- a/pkgs/tools/package-management/nixpkgs-review/default.nix +++ b/pkgs/tools/package-management/nixpkgs-review/default.nix @@ -1,7 +1,7 @@ { lib , python3 , fetchFromGitHub -, nixUnstable +, nix , git }: @@ -17,7 +17,7 @@ python3.pkgs.buildPythonApplication rec { }; makeWrapperArgs = [ - "--prefix" "PATH" ":" "${lib.makeBinPath [ nixUnstable git ]}" + "--prefix" "PATH" ":" "${lib.makeBinPath [ nix git ]}" ]; doCheck = false; diff --git a/pkgs/tools/package-management/nvd/default.nix b/pkgs/tools/package-management/nvd/default.nix index 1218ac01f9a6..2a00acff690c 100644 --- a/pkgs/tools/package-management/nvd/default.nix +++ b/pkgs/tools/package-management/nvd/default.nix @@ -2,13 +2,15 @@ stdenv.mkDerivation rec { pname = "nvd"; - version = "0.1.1"; + version = "0.1.2"; src = fetchFromGitLab { owner = "khumba"; repo = pname; - rev = "v${version}"; - sha256 = "0accq0cw6qsxin1fb2bp2ijgjf9akb9qlivkykpfsgnk5qjafv2n"; + # There is a 0.1.2 release but no tag yet + # https://gitlab.com/khumba/nvd/-/issues/7 + rev = "13d3ab1255e0de03693cecb7da9764c9afd5d472"; + sha256 = "1537s7j0m0hkahf0s1ai7bm94xj9fz6b9x78py0dn3cgnl9bfzla"; }; buildInputs = [ python3 ]; diff --git a/pkgs/tools/security/acsccid/default.nix b/pkgs/tools/security/acsccid/default.nix index da461a96957a..f471393b2cfc 100644 --- a/pkgs/tools/security/acsccid/default.nix +++ b/pkgs/tools/security/acsccid/default.nix @@ -1,4 +1,5 @@ -{ lib, stdenv +{ lib +, stdenv , fetchFromGitHub , autoconf , automake @@ -77,7 +78,7 @@ stdenv.mkDerivation rec { ''; homepage = src.meta.homepage; license = licenses.lgpl2Plus; - maintainers = with maintainers; [ roberth ]; + maintainers = with maintainers; [ ]; platforms = with platforms; unix; }; } diff --git a/pkgs/tools/security/bitwarden/default.nix b/pkgs/tools/security/bitwarden/default.nix index 7d7afa624931..050621cd20ef 100644 --- a/pkgs/tools/security/bitwarden/default.nix +++ b/pkgs/tools/security/bitwarden/default.nix @@ -4,6 +4,7 @@ , fetchurl , lib , libsecret +, libxshmfence , makeDesktopItem , makeWrapper , stdenv @@ -11,18 +12,55 @@ , wrapGAppsHook }: -let - inherit (stdenv.hostPlatform) system; - +stdenv.mkDerivation rec { pname = "bitwarden"; + version = "1.29.1"; - version = { - x86_64-linux = "1.28.1"; - }.${system} or ""; + src = fetchurl { + url = "https://github.com/bitwarden/desktop/releases/download/v${version}/Bitwarden-${version}-amd64.deb"; + sha256 = "0rxy19bazi7a6m2bpx6wadg5d9p0k324h369vgr5ppmxb69d6zp8"; + }; - sha256 = { - x86_64-linux = "sha256-vyEbISZDTN+CHqSEtElzfg4M4i+2RjUux5vzwJw8/dc="; - }.${system} or ""; + desktopItem = makeDesktopItem { + name = "bitwarden"; + exec = "bitwarden %U"; + icon = "bitwarden"; + comment = "A secure and free password manager for all of your devices"; + desktopName = "Bitwarden"; + categories = "Utility"; + }; + + dontBuild = true; + dontConfigure = true; + dontPatchELF = true; + dontWrapGApps = true; + + nativeBuildInputs = [ dpkg makeWrapper autoPatchelfHook wrapGAppsHook ]; + + buildInputs = [ libsecret libxshmfence ] ++ atomEnv.packages; + + unpackPhase = "dpkg-deb -x $src ."; + + installPhase = '' + mkdir -p "$out/bin" + cp -R "opt" "$out" + cp -R "usr/share" "$out/share" + chmod -R g-w "$out" + + # Desktop file + mkdir -p "$out/share/applications" + cp "${desktopItem}/share/applications/"* "$out/share/applications" + ''; + + runtimeDependencies = [ + (lib.getLib udev) + ]; + + postFixup = '' + makeWrapper $out/opt/Bitwarden/bitwarden $out/bin/bitwarden \ + --prefix LD_LIBRARY_PATH : "${lib.makeLibraryPath [ libsecret stdenv.cc.cc ] }" \ + "''${gappsWrapperArgs[@]}" + ''; meta = with lib; { description = "A secure and free password manager for all of your devices"; @@ -31,58 +69,4 @@ let maintainers = with maintainers; [ kiwi ]; platforms = [ "x86_64-linux" ]; }; - - linux = stdenv.mkDerivation rec { - inherit pname version meta; - - src = fetchurl { - url = "https://github.com/bitwarden/desktop/releases/download/" - + "v${version}/Bitwarden-${version}-amd64.deb"; - inherit sha256; - }; - - desktopItem = makeDesktopItem { - name = "bitwarden"; - exec = "bitwarden %U"; - icon = "bitwarden"; - comment = "A secure and free password manager for all of your devices"; - desktopName = "Bitwarden"; - categories = "Utility"; - }; - - dontBuild = true; - dontConfigure = true; - dontPatchELF = true; - dontWrapGApps = true; - - buildInputs = [ libsecret ] ++ atomEnv.packages; - - nativeBuildInputs = [ dpkg makeWrapper autoPatchelfHook wrapGAppsHook ]; - - unpackPhase = "dpkg-deb -x $src ."; - - installPhase = '' - mkdir -p "$out/bin" - cp -R "opt" "$out" - cp -R "usr/share" "$out/share" - chmod -R g-w "$out" - - # Desktop file - mkdir -p "$out/share/applications" - cp "${desktopItem}/share/applications/"* "$out/share/applications" - ''; - - runtimeDependencies = [ - (lib.getLib udev) - ]; - - postFixup = '' - makeWrapper $out/opt/Bitwarden/bitwarden $out/bin/bitwarden \ - --prefix LD_LIBRARY_PATH : "${lib.makeLibraryPath [ libsecret stdenv.cc.cc ] }" \ - "''${gappsWrapperArgs[@]}" - ''; - }; - -in if stdenv.isDarwin -then throw "Bitwarden has not been packaged for macOS yet" -else linux +} diff --git a/pkgs/tools/security/certipy/default.nix b/pkgs/tools/security/certipy/default.nix new file mode 100644 index 000000000000..9e3d4573df22 --- /dev/null +++ b/pkgs/tools/security/certipy/default.nix @@ -0,0 +1,39 @@ +{ lib +, fetchFromGitHub +, python3 +}: + +python3.pkgs.buildPythonApplication rec { + pname = "certipy"; + version = "unstable-2021-11-08"; + + src = fetchFromGitHub { + owner = "ly4k"; + repo = "Certipy"; + rev = "c2f5581505c54f3bf9fe4e6f07c17fa9ef501cab"; + sha256 = "0m2n30prqd9d02kmryk8vry4cabcad1892qr8a02qfg6r98x8q3q"; + }; + + propagatedBuildInputs = with python3.pkgs; [ + asn1crypto + pycryptodome + impacket + ldap3 + pyasn1 + dnspython + ]; + + # Project has no tests + doCheck = false; + + pythonImportsCheck = [ + "certipy" + ]; + + meta = with lib; { + description = "Tool to enumerate and abuse misconfigurations in Active Directory Certificate Services"; + homepage = "https://github.com/ly4k/Certipy"; + license = with licenses; [ mit ]; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/tools/security/cosign/default.nix b/pkgs/tools/security/cosign/default.nix index 64e64e3854bf..c66b3a6426f7 100644 --- a/pkgs/tools/security/cosign/default.nix +++ b/pkgs/tools/security/cosign/default.nix @@ -1,29 +1,35 @@ -{ stdenv, lib, buildGoModule, fetchFromGitHub, pcsclite, pkg-config, PCSC, pivKeySupport ? true }: +{ stdenv, lib, buildGoModule, fetchFromGitHub, pcsclite, pkg-config, installShellFiles, PCSC, pivKeySupport ? true }: buildGoModule rec { pname = "cosign"; - version = "1.2.1"; + version = "1.3.0"; src = fetchFromGitHub { owner = "sigstore"; repo = pname; rev = "v${version}"; - sha256 = "sha256-peR/TPydR4O6kGkRUpOgUCJ7xGRLbl9pYB1lAehjVK4="; + sha256 = "sha256-VKlM+bsK2Oj0UB4LF10pHEIJqXv6cAO5rtxnTogpfOk="; }; - buildInputs = - lib.optional (stdenv.isLinux && pivKeySupport) (lib.getDev pcsclite) + buildInputs = lib.optional (stdenv.isLinux && pivKeySupport) (lib.getDev pcsclite) ++ lib.optionals (stdenv.isDarwin && pivKeySupport) [ PCSC ]; - nativeBuildInputs = [ pkg-config ]; + nativeBuildInputs = [ pkg-config installShellFiles ]; - vendorSha256 = "sha256-DyRMQ43BJOkDtWEqmAzqICyaSyQJ9H4i69VJ4dCGF44="; + vendorSha256 = "sha256-idMvvYeP5rAT6r9RPZ9S8K9KTpVYVq06ZKSBPxWA2ms="; - excludedPackages = "\\(copasetic\\|sample\\|webhook\\)"; + excludedPackages = "\\(sample\\|webhook\\|help\\)"; tags = lib.optionals pivKeySupport [ "pivkey" ]; - ldflags = [ "-s" "-w" "-X github.com/sigstore/cosign/cmd/cosign/cli.GitVersion=v${version}" ]; + ldflags = [ "-s" "-w" "-X github.com/sigstore/cosign/cmd/cosign/cli/options.GitVersion=v${version}" ]; + + postInstall = '' + installShellCompletion --cmd cosign \ + --bash <($out/bin/cosign completion bash) \ + --fish <($out/bin/cosign completion fish) \ + --zsh <($out/bin/cosign completion zsh) + ''; meta = with lib; { homepage = "https://github.com/sigstore/cosign"; diff --git a/pkgs/tools/security/credslayer/default.nix b/pkgs/tools/security/credslayer/default.nix index 0de8d37c0db4..223f9dd70eb9 100644 --- a/pkgs/tools/security/credslayer/default.nix +++ b/pkgs/tools/security/credslayer/default.nix @@ -29,10 +29,20 @@ python3.pkgs.buildPythonApplication rec { disabledTests = [ # Requires a telnet setup "test_telnet" + # stdout has all the correct data, but the underlying test code fails + # functionally everything seems to be intact + "http_get_auth" + "test_http_post_auth" + "test_ntlmssp" ]; pythonImportsCheck = [ "credslayer" ]; + postInstall = '' + wrapProgram $out/bin/credslayer \ + --prefix PATH : "${lib.makeBinPath [ wireshark-cli ]}" + ''; + meta = with lib; { description = "Extract credentials and other useful info from network captures"; homepage = "https://github.com/ShellCode33/CredSLayer"; diff --git a/pkgs/tools/security/enpass/default.nix b/pkgs/tools/security/enpass/default.nix index 63f25bc12efe..7cbbaee45820 100644 --- a/pkgs/tools/security/enpass/default.nix +++ b/pkgs/tools/security/enpass/default.nix @@ -6,7 +6,7 @@ }: let - all_data = builtins.fromJSON (builtins.readFile ./data.json); + all_data = lib.importJSON ./data.json; system_map = { # i686-linux = "i386"; Uncomment if enpass 6 becomes available on i386 x86_64-linux = "amd64"; diff --git a/pkgs/tools/security/exploitdb/default.nix b/pkgs/tools/security/exploitdb/default.nix index 1fe980d3c940..06c6d0bac26c 100644 --- a/pkgs/tools/security/exploitdb/default.nix +++ b/pkgs/tools/security/exploitdb/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "exploitdb"; - version = "2021-10-30"; + version = "2021-11-13"; src = fetchFromGitHub { owner = "offensive-security"; repo = pname; rev = version; - sha256 = "sha256-GwyqtoRxiijF4lewKXX8d/pmO4r+BWn8mfmApGum8/w="; + sha256 = "sha256-0/ZKki+QJpBL+K3zQ0H5d5cfan+pKEYHwr6y4U+FKzM="; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/tools/security/fail2ban/default.nix b/pkgs/tools/security/fail2ban/default.nix index 18128639ff4a..06b4ddc06211 100644 --- a/pkgs/tools/security/fail2ban/default.nix +++ b/pkgs/tools/security/fail2ban/default.nix @@ -47,7 +47,7 @@ python3.pkgs.buildPythonApplication rec { in '' # see https://github.com/NixOS/nixpkgs/issues/4968 - rm -r ${sitePackages}/etc ${sitePackages}/usr + rm -rf ${sitePackages}/etc ${sitePackages}/usr ''; meta = with lib; { diff --git a/pkgs/tools/security/gnupg/1.nix b/pkgs/tools/security/gnupg/1.nix index 66b05384c6be..8fc5dce7ba04 100644 --- a/pkgs/tools/security/gnupg/1.nix +++ b/pkgs/tools/security/gnupg/1.nix @@ -1,10 +1,11 @@ { lib, stdenv, fetchurl, readline, bzip2 }: stdenv.mkDerivation rec { - name = "gnupg-1.4.23"; + pname = "gnupg"; + version = "1.4.23"; src = fetchurl { - url = "mirror://gnupg/gnupg/${name}.tar.bz2"; + url = "mirror://gnupg/gnupg/gnupg-${version}.tar.bz2"; sha256 = "1fkq4sqldvf6a25mm2qz95swv1qjg464736091w51djiwqbjyin9"; }; diff --git a/pkgs/tools/security/hash-slinger/default.nix b/pkgs/tools/security/hash-slinger/default.nix index ee06c112481b..e51d93e9d7fa 100644 --- a/pkgs/tools/security/hash-slinger/default.nix +++ b/pkgs/tools/security/hash-slinger/default.nix @@ -1,45 +1,63 @@ -{ lib, stdenv, fetchFromGitHub, python2Packages, unbound, libreswan }: +{ lib +, stdenv +, fetchFromGitHub +, python3 +, unbound +, libreswan +}: -let - pythonPackages = python2Packages; -in stdenv.mkDerivation rec { - pname = "hash-slinger"; - version = "2.7"; +stdenv.mkDerivation rec { + pname = "hash-slinger"; + version = "3.1"; src = fetchFromGitHub { owner = "letoams"; repo = pname; rev = version; - sha256 = "05wn744ydclpnpyah6yfjqlfjlasrrhzj48lqmm5a91nyps5yqyn"; + sha256 = "sha256-mhMUdZt846QjwRIh2m/4EE+93fUcCKc2FFeoFpzKYvk="; }; - pythonPath = with pythonPackages; [ dnspython m2crypto ipaddr python-gnupg - pyunbound ]; + pythonPath = with python3.pkgs; [ + dnspython + m2crypto + python-gnupg + pyunbound + ]; - buildInputs = [ pythonPackages.wrapPython ]; - propagatedBuildInputs = [ unbound libreswan ] ++ pythonPath; - propagatedUserEnvPkgs = [ unbound libreswan ]; + buildInputs = [ + python3.pkgs.wrapPython + ]; - patchPhase = '' + propagatedBuildInputs = [ + unbound + libreswan + ] ++ pythonPath; + + propagatedUserEnvPkgs = [ + unbound + libreswan + ]; + + postPatch = '' substituteInPlace Makefile \ --replace "$(DESTDIR)/usr" "$out" substituteInPlace ipseckey \ --replace "/usr/sbin/ipsec" "${libreswan}/sbin/ipsec" substituteInPlace tlsa \ - --replace "/var/lib/unbound/root" "${pythonPackages.pyunbound}/etc/pyunbound/root" + --replace "/var/lib/unbound/root" "${python3.pkgs.pyunbound}/etc/pyunbound/root" patchShebangs * - ''; + ''; installPhase = '' - mkdir -p $out/bin $out/man $out/${pythonPackages.python.sitePackages}/ + mkdir -p $out/bin $out/man $out/lib/${python3.libPrefix}/site-packages make install wrapPythonPrograms - ''; + ''; - meta = { + meta = with lib; { description = "Various tools to generate special DNS records"; - homepage = "https://github.com/letoams/hash-slinger"; - license = lib.licenses.gpl2Plus; - maintainers = [ lib.maintainers.leenaars ]; + homepage = "https://github.com/letoams/hash-slinger"; + license = licenses.gpl2Plus; + maintainers = with maintainers; [ leenaars ]; }; } diff --git a/pkgs/tools/security/ioccheck/default.nix b/pkgs/tools/security/ioccheck/default.nix index 1ad7bfd85fe2..e936ab025fad 100644 --- a/pkgs/tools/security/ioccheck/default.nix +++ b/pkgs/tools/security/ioccheck/default.nix @@ -3,13 +3,33 @@ , python3 }: -python3.pkgs.buildPythonApplication rec { +let + py = python3.override { + packageOverrides = self: super: { + + # Support for later tweepy releases is missing + # https://github.com/ranguli/ioccheck/issues/70 + tweepy = super.tweepy.overridePythonAttrs (oldAttrs: rec { + version = "3.10.0"; + + src = fetchFromGitHub { + owner = "tweepy"; + repo = "tweepy"; + rev = "v${version}"; + sha256 = "0k4bdlwjna6f1k19jki4xqgckrinkkw8b9wihzymr1l04rwd05nw"; + }; + doCheck = false; + }); + }; + }; +in +with py.pkgs; + +buildPythonApplication rec { pname = "ioccheck"; version = "unstable-2021-09-29"; format = "pyproject"; - disabled = python3.pythonOlder "3.7"; - src = fetchFromGitHub { owner = "ranguli"; repo = pname; @@ -17,11 +37,11 @@ python3.pkgs.buildPythonApplication rec { sha256 = "0lgqypcd5lzb2yqd5lr02pba24m26ghly4immxgz13svi8f6vzm9"; }; - nativeBuildInputs = with python3.pkgs; [ + nativeBuildInputs = with py.pkgs; [ poetry-core ]; - propagatedBuildInputs = with python3.pkgs; [ + propagatedBuildInputs = with py.pkgs; [ backoff click emoji @@ -36,17 +56,20 @@ python3.pkgs.buildPythonApplication rec { vt-py ]; - checkInputs = with python3.pkgs; [ + checkInputs = with py.pkgs; [ pytestCheckHook ]; postPatch = '' # Can be removed with the next release substituteInPlace pyproject.toml \ - --replace '"hurry.filesize" = "^0.9"' "" + --replace '"hurry.filesize" = "^0.9"' "" \ + --replace 'vt-py = ">=0.6.1,<0.8.0"' 'vt-py = ">=0.6.1"' ''; - pythonImportsCheck = [ "ioccheck" ]; + pythonImportsCheck = [ + "ioccheck" + ]; meta = with lib; { description = "Tool for researching IOCs"; diff --git a/pkgs/tools/security/keybase/default.nix b/pkgs/tools/security/keybase/default.nix index 8b65d3b8b00d..058ed8d1487a 100644 --- a/pkgs/tools/security/keybase/default.nix +++ b/pkgs/tools/security/keybase/default.nix @@ -6,7 +6,7 @@ buildGoPackage rec { pname = "keybase"; - version = "5.7.1"; + version = "5.8.1"; goPackagePath = "github.com/keybase/client"; subPackages = [ "go/kbnm" "go/keybase" ]; @@ -17,7 +17,7 @@ buildGoPackage rec { owner = "keybase"; repo = "client"; rev = "v${version}"; - sha256 = "sha256-72rVk8pYIQFESQqBu4bmFBPpAOB0oG2Iu36TbAdecBw="; + sha256 = "sha256-SeBZtrRsWTv5yBBsp18daKCNAr70OalH3shlKf+aiEU="; }; patches = [ diff --git a/pkgs/tools/security/keybase/gui.nix b/pkgs/tools/security/keybase/gui.nix index 7a19a439a8eb..8912961e3520 100644 --- a/pkgs/tools/security/keybase/gui.nix +++ b/pkgs/tools/security/keybase/gui.nix @@ -4,17 +4,16 @@ , runtimeShell, gsettings-desktop-schemas }: let - versionSuffix = "20210623205749.763227b4c6"; + versionSuffix = "20210930160723.fefa22edc1"; in stdenv.mkDerivation rec { pname = "keybase-gui"; - version = "5.7.1"; # Find latest version from https://prerelease.keybase.io/deb/dists/stable/main/binary-amd64/Packages + version = "5.8.1"; # Find latest version from https://prerelease.keybase.io/deb/dists/stable/main/binary-amd64/Packages src = fetchurl { - url = "https://s3.amazonaws.com/prerelease.keybase.io/linux_binaries/deb/keybase_${version + "-" + versionSuffix}_amd64.deb"; - sha256 = "0ajpkidbzfwhi7q018wriws0n3amcy9g3mfiqm13cpz0q6vkjx83"; + sha256 = "cqbGvnJ6wx5boVe78Ju8CimH1H08DfkM5nmwbV0uKG0="; }; nativeBuildInputs = [ diff --git a/pkgs/tools/security/knockknock/default.nix b/pkgs/tools/security/knockknock/default.nix index 960667e72def..ed7f19065f05 100644 --- a/pkgs/tools/security/knockknock/default.nix +++ b/pkgs/tools/security/knockknock/default.nix @@ -1,14 +1,13 @@ { lib, fetchFromGitHub, python2Packages, hping }: -let - rev = "bf14bbff"; -in python2Packages.buildPythonApplication rec { - pname = "knockknock-r"; - version = rev; + +python2Packages.buildPythonApplication rec { + pname = "knockknock"; + version = "unstable-2012-09-17"; src = fetchFromGitHub { - inherit rev; owner = "moxie0"; repo = "knockknock"; + rev = "bf14bbffc5f1d2105cd1d955dabca26b3faa0db4"; sha256 = "1chpfs3w2vkjrgay69pbdr116z1jldv53fi768a1i05fdqhy1px4"; }; @@ -17,7 +16,7 @@ in python2Packages.buildPythonApplication rec { # No tests doCheck = false; - patchPhase = '' + postPatch = '' sed -i '/build\//d' setup.py substituteInPlace setup.py --replace "/etc" "$out/etc" substituteInPlace knockknock.py --replace 'existsInPath("hping3")' '"${hping}/bin/hping3"' @@ -25,10 +24,10 @@ in python2Packages.buildPythonApplication rec { meta = with lib; { description = "Simple, secure port knocking daemon and client written in Python"; - homepage = "http://www.thoughtcrime.org/software/knockknock/"; - license = licenses.gpl3; + homepage = "https://github.com/moxie0/knockknock"; + license = licenses.gpl3Plus; maintainers = with maintainers; [ copumpkin ]; - platforms = platforms.linux; + platforms = platforms.unix; }; } diff --git a/pkgs/tools/security/kubescape/default.nix b/pkgs/tools/security/kubescape/default.nix index 5a8e50c7096f..e68980cc9659 100644 --- a/pkgs/tools/security/kubescape/default.nix +++ b/pkgs/tools/security/kubescape/default.nix @@ -1,20 +1,31 @@ -{ lib, buildGoModule, fetchFromGitHub, installShellFiles }: +{ lib +, buildGoModule +, fetchFromGitHub +, installShellFiles +}: buildGoModule rec { pname = "kubescape"; - version = "1.0.128"; + version = "1.0.131"; src = fetchFromGitHub { owner = "armosec"; repo = pname; rev = "v${version}"; - sha256 = "sha256-fHXT9vg7uenFDjYmdPkMu63dlmyIATEBCxOn39c80cg="; + sha256 = "sha256-DcReo4pTdI8ssWH1IqD8gDUm4jQ0jBBJ+ltxSpdkxQE="; }; - vendorSha256 = "sha256-cOxjsujlpRbdw4098eMHe2oNAJXWGjKbPeYpKt0DCp8="; - ldflags = [ "-s" "-w" "-X github.com/armosec/kubescape/clihandler/cmd.BuildNumber=v${version}" ]; + nativeBuildInputs = [ + installShellFiles + ]; - nativeBuildInputs = [ installShellFiles ]; + vendorSha256 = "sha256-SxJnYJyKFed1c+zgeeXQQhsKHlaDevJGMwqA5gPef3s="; + + ldflags = [ + "-s" + "-w" + "-X github.com/armosec/kubescape/clihandler/cmd.BuildNumber=v${version}" + ]; postInstall = '' # Running kubescape to generate completions outputs error warnings diff --git a/pkgs/tools/security/libtpms/default.nix b/pkgs/tools/security/libtpms/default.nix index 64bb10cb8bf2..9877aaad7e98 100644 --- a/pkgs/tools/security/libtpms/default.nix +++ b/pkgs/tools/security/libtpms/default.nix @@ -7,13 +7,13 @@ stdenv.mkDerivation rec { pname = "libtpms"; - version = "0.8.6"; + version = "0.9.0"; src = fetchFromGitHub { owner = "stefanberger"; repo = "libtpms"; rev = "v${version}"; - sha256 = "sha256-XvugcpoFQhdCBBg7hOgsUzSn4ad7RUuAEkvyiPLg4Lw="; + sha256 = "sha256-9u5Yq9PXMADvyWZo5aFa0GNzqVsbyN25o/cYQdbrUO0="; }; nativeBuildInputs = [ diff --git a/pkgs/tools/security/metasploit/Gemfile b/pkgs/tools/security/metasploit/Gemfile index 9214b7837f75..d1e114e32450 100644 --- a/pkgs/tools/security/metasploit/Gemfile +++ b/pkgs/tools/security/metasploit/Gemfile @@ -1,4 +1,4 @@ # frozen_string_literal: true source "https://rubygems.org" -gem "metasploit-framework", git: "https://github.com/rapid7/metasploit-framework", ref: "refs/tags/6.1.12" +gem "metasploit-framework", git: "https://github.com/rapid7/metasploit-framework", ref: "refs/tags/6.1.14" diff --git a/pkgs/tools/security/metasploit/Gemfile.lock b/pkgs/tools/security/metasploit/Gemfile.lock index 809c17e914e5..27690111611c 100644 --- a/pkgs/tools/security/metasploit/Gemfile.lock +++ b/pkgs/tools/security/metasploit/Gemfile.lock @@ -1,9 +1,9 @@ GIT remote: https://github.com/rapid7/metasploit-framework - revision: bde342fd8293e49a45ba837ca9a1fdea505bc919 - ref: refs/tags/6.1.12 + revision: 2c47df62b425e4083f4816d71405fed1c0e8b35b + ref: refs/tags/6.1.14 specs: - metasploit-framework (6.1.12) + metasploit-framework (6.1.14) actionpack (~> 6.0) activerecord (~> 6.0) activesupport (~> 6.0) @@ -31,7 +31,7 @@ GIT metasploit-concern metasploit-credential metasploit-model - metasploit-payloads (= 2.0.58) + metasploit-payloads (= 2.0.60) metasploit_data_models metasploit_payloads-mettle (= 1.0.15) mqtt @@ -128,23 +128,23 @@ GEM arel-helpers (2.12.1) activerecord (>= 3.1.0, < 7) aws-eventstream (1.2.0) - aws-partitions (1.521.0) - aws-sdk-core (3.121.5) + aws-partitions (1.528.0) + aws-sdk-core (3.122.1) aws-eventstream (~> 1, >= 1.0.2) - aws-partitions (~> 1, >= 1.520.1) + aws-partitions (~> 1, >= 1.525.0) aws-sigv4 (~> 1.1) jmespath (~> 1.0) - aws-sdk-ec2 (1.275.0) - aws-sdk-core (~> 3, >= 3.121.2) + aws-sdk-ec2 (1.279.0) + aws-sdk-core (~> 3, >= 3.122.0) aws-sigv4 (~> 1.1) - aws-sdk-iam (1.62.0) - aws-sdk-core (~> 3, >= 3.121.2) + aws-sdk-iam (1.63.0) + aws-sdk-core (~> 3, >= 3.122.0) aws-sigv4 (~> 1.1) - aws-sdk-kms (1.50.0) - aws-sdk-core (~> 3, >= 3.121.2) + aws-sdk-kms (1.51.0) + aws-sdk-core (~> 3, >= 3.122.0) aws-sigv4 (~> 1.1) - aws-sdk-s3 (1.104.0) - aws-sdk-core (~> 3, >= 3.121.2) + aws-sdk-s3 (1.105.1) + aws-sdk-core (~> 3, >= 3.122.0) aws-sdk-kms (~> 1) aws-sigv4 (~> 1.4) aws-sigv4 (1.4.0) @@ -212,7 +212,7 @@ GEM domain_name (~> 0.5) http_parser.rb (0.8.0) httpclient (2.8.3) - i18n (1.8.10) + i18n (1.8.11) concurrent-ruby (~> 1.0) io-console (0.5.9) irb (1.3.6) @@ -247,7 +247,7 @@ GEM activemodel (~> 6.0) activesupport (~> 6.0) railties (~> 6.0) - metasploit-payloads (2.0.58) + metasploit-payloads (2.0.60) metasploit_data_models (5.0.4) activerecord (~> 6.0) activesupport (~> 6.0) diff --git a/pkgs/tools/security/metasploit/default.nix b/pkgs/tools/security/metasploit/default.nix index e0348a156974..674418693c75 100644 --- a/pkgs/tools/security/metasploit/default.nix +++ b/pkgs/tools/security/metasploit/default.nix @@ -4,6 +4,7 @@ , makeWrapper , ruby , bundlerEnv +, python3 }: let @@ -14,16 +15,17 @@ let }; in stdenv.mkDerivation rec { pname = "metasploit-framework"; - version = "6.1.12"; + version = "6.1.14"; src = fetchFromGitHub { owner = "rapid7"; repo = "metasploit-framework"; rev = version; - sha256 = "sha256-I7wk8DBN7i4zE4bEIMVGcZi4OMIsbh0Ay2RsAh0VRrw="; + sha256 = "sha256-ySQOc/k+kvdSj5g88ujm4e2apvPVbiaspzSbCdEQ4ZA="; }; nativeBuildInputs = [ makeWrapper ]; + buildInputs = [ (python3.withPackages (ps: [ ps.requests ])) ]; dontPatchELF = true; # stay away from exploit executables @@ -32,6 +34,8 @@ in stdenv.mkDerivation rec { cp -r * $out/share/msf + grep -rl "^#\!.*python2$" $out/share/msf | xargs -d '\n' rm + ( cd $out/share/msf/ for i in msf*; do diff --git a/pkgs/tools/security/metasploit/gemset.nix b/pkgs/tools/security/metasploit/gemset.nix index 91d1e2aa60fb..7c1947ddb4d9 100644 --- a/pkgs/tools/security/metasploit/gemset.nix +++ b/pkgs/tools/security/metasploit/gemset.nix @@ -104,60 +104,60 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0zfwynw6d4lbq63lwk94insrjmgxwfp1lic4913a9ik00wnf90wd"; + sha256 = "1awcpdvfk6dlb9n5wiksq8vhqwdpmkybv4ga8drmlx6x9li3my5k"; type = "gem"; }; - version = "1.521.0"; + version = "1.528.0"; }; aws-sdk-core = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0akv0jyr4crs4r5vdzc18j5drqgpcckm0gnpgi0bzpqyyk6m16hq"; + sha256 = "07cdd2jiydn663xgqv5fykd9zfiv96ma3j4k2khwf06czy40cvwq"; type = "gem"; }; - version = "3.121.5"; + version = "3.122.1"; }; aws-sdk-ec2 = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "13kbrl8r9cm7i9cb6w5ayji1vqaca6h0inxpyx8bhbrwkscrbh2s"; + sha256 = "1cvf70lj99r59wn35pqxg5c6c2qkgnir0b8fqgi8h757xz6b9m72"; type = "gem"; }; - version = "1.275.0"; + version = "1.279.0"; }; aws-sdk-iam = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0vnhcgr5pjkkplh4z2lbwp4w13kbwp236p0y1b1qiia28ra2isxv"; + sha256 = "0ms76yn9iprmvjw1ijrgasss70398i8wmkwmgpghn5wc37z59x2s"; type = "gem"; }; - version = "1.62.0"; + version = "1.63.0"; }; aws-sdk-kms = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0prj048lcbkmxc6k2p7vibn3vw7cy1104dljqjvmwz12h9ds1qlf"; + sha256 = "0qac9dd6qriz6ldghkr8ga74zz28jl109kmvhvag74a3qf7k9dwj"; type = "gem"; }; - version = "1.50.0"; + version = "1.51.0"; }; aws-sdk-s3 = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1h8yzrzinckrfs8ahzqg7fs356vs1ksi5bva1bpfp0i65fjh9mw0"; + sha256 = "12j7i6l52b6hsnj59grn0m1s9pn6l38zmra6ad8i12vdsvd185w7"; type = "gem"; }; - version = "1.104.0"; + version = "1.105.1"; }; aws-sigv4 = { groups = ["default"]; @@ -544,10 +544,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0g2fnag935zn2ggm5cn6k4s4xvv53v2givj1j90szmvavlpya96a"; + sha256 = "0vdd1kii40qhbr9n8qx71k2gskq6rkl8ygy8hw5hfj8bb5a364xf"; type = "gem"; }; - version = "1.8.10"; + version = "1.8.11"; }; io-console = { groups = ["default"]; @@ -664,12 +664,12 @@ platforms = []; source = { fetchSubmodules = false; - rev = "bde342fd8293e49a45ba837ca9a1fdea505bc919"; - sha256 = "1g262lfh4v34rc01svicq8wbi63i8v2j1i462crjxvjd63q29g13"; + rev = "2c47df62b425e4083f4816d71405fed1c0e8b35b"; + sha256 = "1471238hk6rllyn2cvnmyfk9mvg1wvlg4g4qix9gg4iyz5rhw969"; type = "git"; url = "https://github.com/rapid7/metasploit-framework"; }; - version = "6.1.12"; + version = "6.1.14"; }; metasploit-model = { groups = ["default"]; @@ -686,10 +686,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "05z0lqa2w6n1nqw3k2s0cxfbqa7bf1p199gccfahjyxjn9xzhcf7"; + sha256 = "1rg11gjy590cixfy6lmwgd76ai0s2gs4w8m379bkkx2f12lkibhn"; type = "gem"; }; - version = "2.0.58"; + version = "2.0.60"; }; metasploit_data_models = { groups = ["default"]; diff --git a/pkgs/tools/security/minio-certgen/default.nix b/pkgs/tools/security/minio-certgen/default.nix index 2fa7a7b9b403..ec7b0e976ee2 100644 --- a/pkgs/tools/security/minio-certgen/default.nix +++ b/pkgs/tools/security/minio-certgen/default.nix @@ -17,6 +17,6 @@ buildGoModule rec { description = "A simple Minio tool to generate self-signed certificates, and provides SAN certificates with DNS and IP entries"; downloadPage = "https://github.com/minio/certgen"; license = licenses.bsd3; - maintainers = with maintainers; [ ]; + maintainers = with maintainers; [ bryanasdev000 ]; }; } diff --git a/pkgs/tools/security/mkpasswd/default.nix b/pkgs/tools/security/mkpasswd/default.nix index e001239f3136..7fea400f008c 100644 --- a/pkgs/tools/security/mkpasswd/default.nix +++ b/pkgs/tools/security/mkpasswd/default.nix @@ -1,13 +1,13 @@ -{ lib, stdenv, whois, perl }: +{ lib, stdenv, whois, libxcrypt, perl, pkg-config }: stdenv.mkDerivation { - name = "mkpasswd-${whois.version}"; + pname = "mkpasswd"; + inherit (whois) version src; - src = whois.src; + nativeBuildInputs = [ perl pkg-config ]; + buildInputs = [ libxcrypt ]; - nativeBuildInputs = [ perl ]; - - preConfigure = whois.preConfigure; + inherit (whois) preConfigure; buildPhase = "make mkpasswd"; installPhase = "make install-mkpasswd"; diff --git a/pkgs/tools/security/nosqli/default.nix b/pkgs/tools/security/nosqli/default.nix index 3163d1683710..dbe336edc6d0 100644 --- a/pkgs/tools/security/nosqli/default.nix +++ b/pkgs/tools/security/nosqli/default.nix @@ -5,16 +5,16 @@ buildGoModule rec { pname = "nosqli"; - version = "0.5.2"; + version = "0.5.4"; src = fetchFromGitHub { owner = "Charlie-belmer"; repo = pname; rev = "v${version}"; - sha256 = "006z76v4a3pxzgnkj5nl0mrlsqmfgvg51w20dl118k2xa70zz63j"; + sha256 = "sha256-CgD9b5eHDK/8QhQmrqT09Jf9snn9WItNMtTNbJFT2sI="; }; - vendorSha256 = "01spdh2gbzp6yg2jbiwfnyhqb5s605hyfxhs0f9h4ps4qbi1h9cv"; + vendorSha256 = "sha256-QnrzEei4Pt4C0vCJu4YN28lWWAqEikmNLrqshd3knx4="; meta = with lib; { description = "NoSql Injection tool for finding vulnerable websites using MongoDB"; diff --git a/pkgs/tools/security/nwipe/default.nix b/pkgs/tools/security/nwipe/default.nix index eb87e8cba862..8cfa47b5d44a 100644 --- a/pkgs/tools/security/nwipe/default.nix +++ b/pkgs/tools/security/nwipe/default.nix @@ -9,13 +9,13 @@ stdenv.mkDerivation rec { pname = "nwipe"; - version = "0.31"; + version = "0.32"; src = fetchFromGitHub { owner = "martijnvanbrummelen"; repo = "nwipe"; rev = "v${version}"; - sha256 = "sha256-+xwQLjl0jhven6udfCprRKW8qWM6JMh5MOZ+ZdaJWQg="; + sha256 = "sha256-O3kYiai+5KMHWd2om4+HrTIw9lB2wLJF3Mrr6iY2+I8="; }; nativeBuildInputs = [ diff --git a/pkgs/tools/security/onlykey/default.nix b/pkgs/tools/security/onlykey/default.nix index 4cad7e513acd..312f580c0239 100644 --- a/pkgs/tools/security/onlykey/default.nix +++ b/pkgs/tools/security/onlykey/default.nix @@ -12,7 +12,7 @@ let # parse the version from package.json version = let - packageJson = builtins.fromJSON (builtins.readFile ./package.json); + packageJson = lib.importJSON ./package.json; splits = builtins.split "^.*#v(.*)$" (builtins.getAttr "onlykey" (builtins.head packageJson)); matches = builtins.elemAt splits 1; elem = builtins.head matches; diff --git a/pkgs/tools/security/otpauth/default.nix b/pkgs/tools/security/otpauth/default.nix index 28dfab546a8b..fe01c40d2c4c 100644 --- a/pkgs/tools/security/otpauth/default.nix +++ b/pkgs/tools/security/otpauth/default.nix @@ -5,13 +5,13 @@ buildGoModule rec { pname = "otpauth"; - version = "0.3.5"; + version = "0.4.0"; src = fetchFromGitHub { owner = "dim13"; repo = "otpauth"; rev = "v${version}"; - sha256 = "sha256-Jr1cZbXKZa6M7tIex67SjDPkWSYHWSZ7vRYd8us7Oek="; + sha256 = "sha256-LGDeNkCxVLDVpwi5VFFL0DFsf8CexI7Nc5l+l2ASHaw="; }; runVend = true; diff --git a/pkgs/tools/security/passff-host/default.nix b/pkgs/tools/security/passff-host/default.nix index fb348800f5a1..87b349c63a46 100644 --- a/pkgs/tools/security/passff-host/default.nix +++ b/pkgs/tools/security/passff-host/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "passff-host"; - version = "1.2.1"; + version = "1.2.2"; src = fetchFromGitHub { owner = "passff"; repo = pname; rev = version; - sha256 = "0ydfwvhgnw5c3ydx2gn5d7ys9g7cxlck57vfddpv6ix890v21451"; + sha256 = "sha256-9q4onU/e/pzLp5lGQjf/ScOOCVMiMQRaLGEm8K8flX4="; }; buildInputs = [ python3 ]; diff --git a/pkgs/tools/security/pinentry/default.nix b/pkgs/tools/security/pinentry/default.nix index 4f6ddae30442..f34acafc9fe9 100644 --- a/pkgs/tools/security/pinentry/default.nix +++ b/pkgs/tools/security/pinentry/default.nix @@ -1,7 +1,6 @@ { fetchurl, mkDerivation, fetchpatch, stdenv, lib, pkg-config, autoreconfHook, wrapGAppsHook , libgpg-error, libassuan, qtbase, wrapQtAppsHook -, ncurses, gtk2, gcr -, libcap ? null, libsecret ? null +, ncurses, gtk2, gcr, libcap, libsecret , enabledFlavors ? [ "curses" "tty" "gtk2" "emacs" ] ++ lib.optionals stdenv.isLinux [ "gnome3" ] ++ lib.optionals (stdenv.hostPlatform.system != "aarch64-darwin") [ "qt" ] @@ -52,7 +51,8 @@ pinentryMkDerivation rec { nativeBuildInputs = [ pkg-config autoreconfHook ] ++ concatMap(f: flavorInfo.${f}.nativeBuildInputs or []) enabledFlavors; - buildInputs = [ libgpg-error libassuan libcap libsecret ] + buildInputs = [ libgpg-error libassuan libsecret ] + ++ lib.optional (!stdenv.isDarwin) libcap ++ concatMap(f: flavorInfo.${f}.buildInputs or []) enabledFlavors; dontWrapGApps = true; diff --git a/pkgs/tools/security/pwncat/default.nix b/pkgs/tools/security/pwncat/default.nix index 67cfac9085fa..398132c4cee7 100644 --- a/pkgs/tools/security/pwncat/default.nix +++ b/pkgs/tools/security/pwncat/default.nix @@ -5,11 +5,11 @@ buildPythonApplication rec { pname = "pwncat"; - version = "0.1.1"; + version = "0.1.2"; src = fetchPypi { inherit pname version; - sha256 = "62e625e9061f037cfca7b7455a4f7db4213c1d1302e73d4c475c63f924f1805f"; + sha256 = "1230fdn5mx3wwr3a3nn6z2vwh973n248m11hnx9y3fjq7bgpky67"; }; # Tests requires to start containers diff --git a/pkgs/tools/security/rbw/default.nix b/pkgs/tools/security/rbw/default.nix index c799c9b2a871..919fda9c67c5 100644 --- a/pkgs/tools/security/rbw/default.nix +++ b/pkgs/tools/security/rbw/default.nix @@ -26,15 +26,15 @@ rustPlatform.buildRustPackage rec { pname = "rbw"; - version = "1.4.0"; + version = "1.4.1"; src = fetchCrate { inherit version; crateName = pname; - sha256 = "sha256-6O33rn/MTo7Dymwh57xQJ5v7n4yNSoICyR9gRwF4AH4="; + sha256 = "sha256-RNdxAp3Q/xNrK1XcKZPMfuqxWzDtdhwT+nqG25SjJhI="; }; - cargoSha256 = "sha256-BrjKUovVV6BDZXtILVC0qaAF5xzE3715u9w9OYIJFbk="; + cargoSha256 = "sha256-I0KwHCmfYxgSF5IMHiPooaf2bypd6eYCOPSB+qnEBJY="; nativeBuildInputs = [ pkg-config @@ -44,7 +44,11 @@ rustPlatform.buildRustPackage rec { buildInputs = lib.optionals stdenv.isDarwin [ Security libiconv ]; - postPatch = lib.optionalString withFzf '' + postPatch = '' + patchShebangs bin/git-credential-rbw + substituteInPlace bin/git-credential-rbw \ + --replace rbw $out/bin/rbw + '' + lib.optionalString withFzf '' patchShebangs bin/rbw-fzf substituteInPlace bin/rbw-fzf \ --replace fzf ${fzf}/bin/fzf \ @@ -70,6 +74,7 @@ rustPlatform.buildRustPackage rec { $out/bin/rbw gen-completions $shell > rbw.$shell installShellCompletion rbw.$shell done + cp bin/git-credential-rbw $out/bin '' + lib.optionalString withFzf '' cp bin/rbw-fzf $out/bin '' + lib.optionalString withRofi '' diff --git a/pkgs/tools/security/swtpm/default.nix b/pkgs/tools/security/swtpm/default.nix index fa2d774e1174..7f2352c7282c 100644 --- a/pkgs/tools/security/swtpm/default.nix +++ b/pkgs/tools/security/swtpm/default.nix @@ -12,13 +12,13 @@ stdenv.mkDerivation rec { pname = "swtpm"; - version = "0.6.0"; + version = "0.6.1"; src = fetchFromGitHub { owner = "stefanberger"; repo = "swtpm"; rev = "v${version}"; - sha256 = "sha256-7YzdwGAGECj7PhaCOf/dLSILPXqtbylCkN79vuFBw5Y="; + sha256 = "sha256-iy8xjKnPLq1ntZa9x+KtLDznzu6m+1db3NPeGQESUVo="; }; patches = [ @@ -33,6 +33,7 @@ stdenv.mkDerivation rec { perl # for pod2man autoreconfHook ]; + buildInputs = [ libtpms openssl libtasn1 libseccomp @@ -45,8 +46,8 @@ stdenv.mkDerivation rec { "--localstatedir=/var" ]; - prePatch = '' - # Makefile tries to create the directory /var/lib/swtpm-localcafor, which fails + postPatch = '' + # Makefile tries to create the directory /var/lib/swtpm-localca, which fails substituteInPlace samples/Makefile.am \ --replace 'install-data-local:' 'do-not-execute:' diff --git a/pkgs/tools/security/theharvester/default.nix b/pkgs/tools/security/theharvester/default.nix index dc1596facdff..5e7b2dbd04f1 100644 --- a/pkgs/tools/security/theharvester/default.nix +++ b/pkgs/tools/security/theharvester/default.nix @@ -5,13 +5,13 @@ python3.pkgs.buildPythonApplication rec { pname = "theharvester"; - version = "4.0.0"; + version = "4.0.2"; src = fetchFromGitHub { owner = "laramies"; repo = pname; rev = version; - sha256 = "02jhk34znpvq522pqr3x4c0rljw37x62znwycijf1zx81dpbn4rm"; + sha256 = "sha256-jG0uVfeAfbX809XTUhoSpYdh2i42NoGzortv96dWEAs="; }; propagatedBuildInputs = with python3.pkgs; [ @@ -27,6 +27,7 @@ python3.pkgs.buildPythonApplication rec { fastapi lxml netaddr + orjson plotly pyppeteer pyyaml diff --git a/pkgs/tools/security/tpm-luks/default.nix b/pkgs/tools/security/tpm-luks/default.nix index 2af4a742208c..4aab72cb5dfc 100644 --- a/pkgs/tools/security/tpm-luks/default.nix +++ b/pkgs/tools/security/tpm-luks/default.nix @@ -2,7 +2,7 @@ stdenv.mkDerivation { pname = "tpm-luks"; - version = "git-2015-07-11"; + version = "unstable-2015-07-11"; src = fetchgit { url = "https://github.com/momiji/tpm-luks"; @@ -23,14 +23,14 @@ stdenv.mkDerivation { make install DESTDIR=$out mv $out/$out/sbin $out/bin rm -r $out/nix - ''; + ''; meta = with lib; { description = "LUKS key storage in TPM NVRAM"; - homepage = "https://github.com/shpedoikal/tpm-luks/"; + homepage = "https://github.com/shpedoikal/tpm-luks/"; maintainers = [ maintainers.tstrobel ]; license = with licenses; [ gpl2Only ]; - platforms = platforms.linux; + platforms = platforms.linux; }; } diff --git a/pkgs/tools/security/wpscan/Gemfile.lock b/pkgs/tools/security/wpscan/Gemfile.lock index 23e4a17ea8af..9fd526674365 100644 --- a/pkgs/tools/security/wpscan/Gemfile.lock +++ b/pkgs/tools/security/wpscan/Gemfile.lock @@ -26,16 +26,16 @@ GEM ffi (1.15.4) get_process_mem (0.2.7) ffi (~> 1.0) - i18n (1.8.10) + i18n (1.8.11) concurrent-ruby (~> 1.0) minitest (5.14.4) - nokogiri (1.12.4-x86_64-linux) + nokogiri (1.12.5-x86_64-linux) racc (~> 1.4) opt_parse_validator (1.9.5) activesupport (>= 5.2, < 6.2.0) addressable (>= 2.5, < 2.9) public_suffix (4.0.6) - racc (1.5.2) + racc (1.6.0) ruby-progressbar (1.11.0) sys-proctable (1.2.6) ffi @@ -44,12 +44,12 @@ GEM tzinfo (2.0.4) concurrent-ruby (~> 1.0) webrick (1.7.0) - wpscan (3.8.19) + wpscan (3.8.20) cms_scanner (~> 0.13.6) xmlrpc (0.3.2) webrick yajl-ruby (1.4.1) - zeitwerk (2.4.2) + zeitwerk (2.5.1) PLATFORMS x86_64-linux diff --git a/pkgs/tools/security/wpscan/gemset.nix b/pkgs/tools/security/wpscan/gemset.nix index d62c17bc94d2..0c882a313312 100644 --- a/pkgs/tools/security/wpscan/gemset.nix +++ b/pkgs/tools/security/wpscan/gemset.nix @@ -80,20 +80,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0g2fnag935zn2ggm5cn6k4s4xvv53v2givj1j90szmvavlpya96a"; + sha256 = "0vdd1kii40qhbr9n8qx71k2gskq6rkl8ygy8hw5hfj8bb5a364xf"; type = "gem"; }; - version = "1.8.10"; - }; - minitest = { - groups = ["default"]; - platforms = []; - source = { - remotes = ["https://rubygems.org"]; - sha256 = "19z7wkhg59y8abginfrm2wzplz7py3va8fyngiigngqvsws6cwgl"; - type = "gem"; - }; - version = "5.14.4"; + version = "1.8.11"; }; mini_portile2 = { groups = ["default"]; @@ -105,16 +95,26 @@ }; version = "2.6.1"; }; + minitest = { + groups = ["default"]; + platforms = []; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "19z7wkhg59y8abginfrm2wzplz7py3va8fyngiigngqvsws6cwgl"; + type = "gem"; + }; + version = "5.14.4"; + }; nokogiri = { dependencies = ["mini_portile2" "racc"]; groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1sad16idsxayhaaswc3bksii1ydiqyzikl7y0ng35cn7w4g1dv3z"; + sha256 = "1v02g7k7cxiwdcahvlxrmizn3avj2q6nsjccgilq1idc89cr081b"; type = "gem"; }; - version = "1.12.4"; + version = "1.12.5"; }; opt_parse_validator = { dependencies = ["activesupport" "addressable"]; @@ -142,10 +142,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "178k7r0xn689spviqzhvazzvxfq6fyjldxb3ywjbgipbfi4s8j1g"; + sha256 = "0la56m0z26j3mfn1a9lf2l03qx1xifanndf9p3vx1azf6sqy7v9d"; type = "gem"; }; - version = "1.5.2"; + version = "1.6.0"; }; ruby-progressbar = { groups = ["default"]; @@ -206,10 +206,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0gv5ym8sxr9901z55d0dakc7af954rp2asnd1a68arjvfyj96sq3"; + sha256 = "07mzbds1j0a1y6jw4swgc4d7kcflkycdk3ivdw3lxaqaqvbfs35p"; type = "gem"; }; - version = "3.8.19"; + version = "3.8.20"; }; xmlrpc = { dependencies = ["webrick"]; @@ -237,9 +237,9 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1746czsjarixq0x05f7p3hpzi38ldg6wxnxxw74kbjzh1sdjgmpl"; + sha256 = "18l4r6layck0d80ydc692mv1lxak5xbf6w2paj1x7m2ggbggzxgj"; type = "gem"; }; - version = "2.4.2"; + version = "2.5.1"; }; } diff --git a/pkgs/tools/system/btop/default.nix b/pkgs/tools/system/btop/default.nix index 6dfe63215f15..09e965583adb 100644 --- a/pkgs/tools/system/btop/default.nix +++ b/pkgs/tools/system/btop/default.nix @@ -5,13 +5,13 @@ stdenv.mkDerivation rec { pname = "btop"; - version = "1.0.20"; + version = "1.0.24"; src = fetchFromGitHub { owner = "aristocratos"; repo = pname; rev = "v${version}"; - sha256 = "sha256-QMuixP4+wYVcF3s848cw6103PGDON4Inj2Nypt4FGIU="; + sha256 = "sha256-Vl62v92TmXNR6x7LDmNpiOlOgNNm0WuZva1SCKqqvbQ="; }; installFlags = [ "PREFIX=$(out)" ]; diff --git a/pkgs/tools/system/clinfo/default.nix b/pkgs/tools/system/clinfo/default.nix index 9c5b54f554bd..a9e7c0c81def 100644 --- a/pkgs/tools/system/clinfo/default.nix +++ b/pkgs/tools/system/clinfo/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchFromGitHub, ocl-icd, opencl-headers }: +{ lib, stdenv, fetchFromGitHub, ocl-icd, opencl-headers, OpenCL }: stdenv.mkDerivation rec { pname = "clinfo"; @@ -11,11 +11,11 @@ stdenv.mkDerivation rec { sha256 = "sha256-0ijfbfv1F6mnt1uFH/A4yOADJoAFrPMa3yAOFJW53ek="; }; - buildInputs = [ ocl-icd opencl-headers ]; - - NIX_CFLAGS_COMPILE = [ - "-Wno-error=stringop-overflow" - "-Wno-error=stringop-truncation" + buildInputs = lib.optionals (!stdenv.isDarwin) [ + ocl-icd + opencl-headers + ] ++ lib.optionals stdenv.isDarwin [ + OpenCL ]; makeFlags = [ "PREFIX=${placeholder "out"}" ]; @@ -24,7 +24,7 @@ stdenv.mkDerivation rec { description = "Print all known information about all available OpenCL platforms and devices in the system"; homepage = "https://github.com/Oblomov/clinfo"; license = licenses.cc0; - maintainers = with maintainers; [ athas ]; - platforms = platforms.linux; + maintainers = with maintainers; [ athas r-burns ]; + platforms = platforms.unix; }; } diff --git a/pkgs/tools/system/das_watchdog/default.nix b/pkgs/tools/system/das_watchdog/default.nix index d9332acc898f..65be63bffe12 100644 --- a/pkgs/tools/system/das_watchdog/default.nix +++ b/pkgs/tools/system/das_watchdog/default.nix @@ -2,7 +2,7 @@ stdenv.mkDerivation { pname = "das_watchdog"; - version = "git-2015-09-12"; + version = "unstable-2015-09-12"; src = fetchgit { url = "https://github.com/kmatheussen/das_watchdog.git"; diff --git a/pkgs/tools/system/efibootmgr/default.nix b/pkgs/tools/system/efibootmgr/default.nix index 0c678dd9c51b..fd7eceede159 100644 --- a/pkgs/tools/system/efibootmgr/default.nix +++ b/pkgs/tools/system/efibootmgr/default.nix @@ -22,8 +22,6 @@ stdenv.mkDerivation rec { sha256 = "1sbijvlpv4khkix3vix9mbhzffj8lp8zpnbxm9gnzjz8yssz9p5h"; }) ]; - # We have no LTO here since commit 22284b07. - postPatch = if stdenv.isi686 then "sed '/^CFLAGS/s/-flto//' -i Make.defaults" else null; makeFlags = [ "EFIDIR=nixos" "PKG_CONFIG=${stdenv.cc.targetPrefix}pkg-config" ]; diff --git a/pkgs/tools/system/efivar/default.nix b/pkgs/tools/system/efivar/default.nix index c92b28e7f5ea..ed831c5ecf6d 100644 --- a/pkgs/tools/system/efivar/default.nix +++ b/pkgs/tools/system/efivar/default.nix @@ -39,9 +39,11 @@ stdenv.mkDerivation rec { sha256 = "1ajj11wwsvamfspq4naanvw08h63gr0g71q0dfbrrywrhc0jlmdw"; }) ]; - # We have no LTO here since commit 22284b07. With GCC 10 that triggers a warning. - postPatch = "sed '/^OPTIMIZE /s/-flto//' -i Make.defaults"; - NIX_CFLAGS_COMPILE = "-Wno-error=stringop-truncation"; + + NIX_CFLAGS_COMPILE = [ + "-Wno-error=stringop-truncation" + "-flto-partition=none" + ]; nativeBuildInputs = [ pkg-config ]; buildInputs = [ popt ]; diff --git a/pkgs/tools/system/gdu/default.nix b/pkgs/tools/system/gdu/default.nix index 43d08b119656..730a5d6cd238 100644 --- a/pkgs/tools/system/gdu/default.nix +++ b/pkgs/tools/system/gdu/default.nix @@ -7,13 +7,13 @@ buildGoModule rec { pname = "gdu"; - version = "5.9.0"; + version = "5.10.0"; src = fetchFromGitHub { owner = "dundee"; repo = pname; rev = "v${version}"; - sha256 = "sha256-bJvIm2ZmbfSI+RtaBYlUYVVF7Q7vKwtKMCUC8tS8ZOI="; + sha256 = "sha256-JXjlK/XTIJeJj8do7JsoZQ8kE+bgy6czXAam/cj7IQo="; }; vendorSha256 = "0ls0pw1m6hy203cdkmp9847h2fmvc4hjkv5x2v6r7516cqbs25ac"; diff --git a/pkgs/tools/system/plan9port/default.nix b/pkgs/tools/system/plan9port/default.nix index a735e35624f7..7e4ce71ec547 100644 --- a/pkgs/tools/system/plan9port/default.nix +++ b/pkgs/tools/system/plan9port/default.nix @@ -1,23 +1,26 @@ -{ lib, stdenv, fetchFromGitHub, which +{ lib +, stdenv +, fetchFromGitHub , darwin ? null -, xorgproto ? null +, fontconfig ? null +, freetype ? null , libX11 , libXext ? null , libXt ? null -, fontconfig ? null -, freetype ? null , perl ? null # For building web manuals +, which +, xorgproto ? null }: stdenv.mkDerivation { pname = "plan9port"; - version = "2021-04-22"; + version = "0.pre+date=2021-10-19"; src = fetchFromGitHub { owner = "9fans"; repo = "plan9port"; - rev = "70cc6e5ba7798b315c3fb3aae19620a01604a459"; - hash = "sha256-HCn8R9YSocHrpw/xK5n8gsCLSAbAQgw0NtjO9vYIbKo="; + rev = "d0d440860f2000a1560abb3f593cdc325fcead4c"; + hash = "sha256-2aYXqPGwrReyFPrLDtEjgQd/RJjpOfI3ge/tDocYpRQ="; }; postPatch = '' @@ -44,10 +47,18 @@ stdenv.mkDerivation { buildInputs = [ perl ] ++ lib.optionals (!stdenv.isDarwin) [ - xorgproto libX11 libXext libXt fontconfig - freetype # fontsrv wants ft2build.h provides system fonts for acme and sam. + fontconfig + freetype # fontsrv wants ft2build.h provides system fonts for acme and sam + libX11 + libXext + libXt + xorgproto ] ++ lib.optionals stdenv.isDarwin (with darwin.apple_sdk.frameworks; [ - Carbon Cocoa IOKit Metal QuartzCore + Carbon + Cocoa + IOKit + Metal + QuartzCore ]); builder = ./builder.sh; diff --git a/pkgs/tools/system/rsyslog/default.nix b/pkgs/tools/system/rsyslog/default.nix index 8e1e51469dd1..22c093303afc 100644 --- a/pkgs/tools/system/rsyslog/default.nix +++ b/pkgs/tools/system/rsyslog/default.nix @@ -14,11 +14,11 @@ let in stdenv.mkDerivation rec { pname = "rsyslog"; - version = "8.2108.0"; + version = "8.2110.0"; src = fetchurl { url = "https://www.rsyslog.com/files/download/rsyslog/${pname}-${version}.tar.gz"; - sha256 = "sha256-SCbCttCBqclfRp+wEVvj+VEgZSl9PeAOxRN1jNswsdk="; + sha256 = "sha256-P5BOwTfKZBLoJz94ltli7LWJ99DFib3xaxcJ7CfiTzE="; }; #patches = [ ./fix-gnutls-detection.patch ]; diff --git a/pkgs/tools/system/syslog-ng/default.nix b/pkgs/tools/system/syslog-ng/default.nix index 9c4526c91b3f..51f8cd94da1e 100644 --- a/pkgs/tools/system/syslog-ng/default.nix +++ b/pkgs/tools/system/syslog-ng/default.nix @@ -7,11 +7,11 @@ stdenv.mkDerivation rec { pname = "syslog-ng"; - version = "3.33.2"; + version = "3.34.1"; src = fetchurl { url = "https://github.com/${pname}/${pname}/releases/download/${pname}-${version}/${pname}-${version}.tar.gz"; - sha256 = "sha256-C3hqBgd7kVAZHXFPRaG0s3kpUstYFjo68zbwdNqfsUs="; + sha256 = "sha256-zs457BxoyI1JNwXgpSi4PQONo4TonUg4OTzMdfYqLUw="; }; nativeBuildInputs = [ pkg-config which ]; diff --git a/pkgs/tools/system/tree/default.nix b/pkgs/tools/system/tree/default.nix index acf0813b3ac2..78341e968184 100644 --- a/pkgs/tools/system/tree/default.nix +++ b/pkgs/tools/system/tree/default.nix @@ -4,22 +4,20 @@ let # These settings are found in the Makefile, but there seems to be no # way to select one ore the other setting other than editing the file # manually, so we have to duplicate the know how here. - systemFlags = with stdenv; - if isDarwin then '' - CFLAGS="-O2 -Wall -fomit-frame-pointer" - LDFLAGS= - EXTRA_OBJS=strverscmp.o - '' else if isCygwin then '' - CFLAGS="-O2 -Wall -fomit-frame-pointer -DCYGWIN" - LDFLAGS=-s - TREE_DEST=tree.exe - EXTRA_OBJS=strverscmp.o - '' else if (isFreeBSD || isOpenBSD) then '' - CFLAGS="-O2 -Wall -fomit-frame-pointer" - LDFLAGS=-s - EXTRA_OBJS=strverscmp.o - '' else - ""; # use linux flags by default + systemFlags = lib.optionalString stdenv.isDarwin '' + CFLAGS="-O2 -Wall -fomit-frame-pointer" + LDFLAGS= + EXTRA_OBJS=strverscmp.o + '' + lib.optionalString stdenv.isCygwin '' + CFLAGS="-O2 -Wall -fomit-frame-pointer -DCYGWIN" + LDFLAGS=-s + TREE_DEST=tree.exe + EXTRA_OBJS=strverscmp.o + '' + lib.optionalString (stdenv.isFreeBSD || stdenv.isOpenBSD) '' + CFLAGS="-O2 -Wall -fomit-frame-pointer" + LDFLAGS=-s + EXTRA_OBJS=strverscmp.o + ''; # use linux flags by default in stdenv.mkDerivation rec { pname = "tree"; @@ -30,27 +28,27 @@ stdenv.mkDerivation rec { sha256 = "1hmpz6k0mr6salv0nprvm1g0rdjva1kx03bdf1scw8a38d5mspbi"; }; - configurePhase = '' + preConfigure = '' sed -i Makefile -e 's|^OBJS=|OBJS=$(EXTRA_OBJS) |' - makeFlagsArray=( - prefix=$out - MANDIR=$out/share/man/man1 - ${systemFlags} - CC="$CC" - ) + makeFlagsArray+=("CC=$CC") ''; - meta = { + makeFlags = [ + "prefix=${placeholder "out"}" + "MANDIR=${placeholder "out"}/share/man/man1" + systemFlags + ]; + + meta = with lib; { homepage = "http://mama.indstate.edu/users/ice/tree/"; description = "Command to produce a depth indented directory listing"; - license = lib.licenses.gpl2; - + license = licenses.gpl2; longDescription = '' Tree is a recursive directory listing command that produces a depth indented listing of files, which is colorized ala dircolors if the LS_COLORS environment variable is set and output is to tty. ''; - - platforms = lib.platforms.all; + platforms = platforms.all; + maintainers = with maintainers; [ SuperSandro2000 ]; }; } diff --git a/pkgs/tools/text/ansifilter/default.nix b/pkgs/tools/text/ansifilter/default.nix index 97b06b9a0c7e..79aa4e2debcd 100644 --- a/pkgs/tools/text/ansifilter/default.nix +++ b/pkgs/tools/text/ansifilter/default.nix @@ -14,6 +14,8 @@ stdenv.mkDerivation rec { postPatch = '' substituteInPlace src/makefile --replace "CC=g++" "CC=c++" + # avoid timestamp non-determinism with '-n' + substituteInPlace makefile --replace 'gzip -9f' 'gzip -9nf' ''; makeFlags = [ diff --git a/pkgs/tools/text/chroma/default.nix b/pkgs/tools/text/chroma/default.nix index 1b9cbcd3727a..42784d65a739 100644 --- a/pkgs/tools/text/chroma/default.nix +++ b/pkgs/tools/text/chroma/default.nix @@ -1,37 +1,32 @@ { lib, buildGoModule, fetchFromGitHub }: +let + srcInfo = lib.importJSON ./src.json; +in + buildGoModule rec { pname = "chroma"; - version = "0.9.2"; + version = "0.9.4"; + # To update: + # nix-prefetch-git --rev v${version} https://github.com/alecthomas/chroma.git > src.json src = fetchFromGitHub { owner = "alecthomas"; repo = pname; rev = "v${version}"; - sha256 = "19d7yr6q8kwrm91yyglmw9n7wa861sgi6dbwn8sl6dp55czfwvaq"; - # populate values otherwise taken care of by goreleaser, - # unfortunately these require us to use git. By doing - # this in postFetch we can delete .git afterwards and - # maintain better reproducibility of the src. - leaveDotGit = true; - postFetch = '' - cd "$out" - - commit="$(git rev-parse HEAD)" - date=$(git show -s --format=%aI "$commit") - - substituteInPlace "$out/cmd/chroma/main.go" \ - --replace 'version = "?"' 'version = "${version}"' \ - --replace 'commit = "?"' "commit = \"$commit\"" \ - --replace 'date = "?"' "date = \"$date\"" - - find "$out" -name .git -print0 | xargs -0 rm -rf - ''; + inherit (srcInfo) sha256; }; - vendorSha256 = "0y8mp08zccn9qxrsj9j7vambz8dwzsxbbgrlppzam53rg8rpxhrg"; + vendorSha256 = "1l5ryhwifhff41r4z1d2lifpvjcc4yi1vzrzlvkx3iy9dmxqcssl"; - subPackages = [ "cmd/chroma" ]; + modRoot = "./cmd/chroma"; + + # substitute version info as done in goreleaser builds + ldflags = [ + "-X" "main.version=${version}" + "-X" "main.commit=${srcInfo.rev}" + "-X" "main.date=${srcInfo.date}" + ]; meta = with lib; { homepage = "https://github.com/alecthomas/chroma"; diff --git a/pkgs/tools/text/chroma/src.json b/pkgs/tools/text/chroma/src.json new file mode 100644 index 000000000000..9bfc8d9c2c73 --- /dev/null +++ b/pkgs/tools/text/chroma/src.json @@ -0,0 +1,11 @@ +{ + "url": "https://github.com/alecthomas/chroma.git", + "rev": "6520148857c2ae3106ff371e527abea815b23915", + "date": "2021-10-17T08:46:20+11:00", + "path": "/nix/store/0s8a46d1nyjl3yhsgni2jz5vdv95cka8-chroma", + "sha256": "1iy6mymdjxbl5wbll1mivv7gqdyqhl6xpfqps99z307m7y38r1ni", + "fetchLFS": false, + "fetchSubmodules": false, + "deepClone": false, + "leaveDotGit": false +} diff --git a/pkgs/tools/text/cmigemo/default.nix b/pkgs/tools/text/cmigemo/default.nix index 6787d68991d3..3562d40bc3e3 100644 --- a/pkgs/tools/text/cmigemo/default.nix +++ b/pkgs/tools/text/cmigemo/default.nix @@ -1,4 +1,7 @@ -{ lib, stdenv, fetchFromGitHub, fetchurl, gzip, libiconv, nkf, perl, skk-dicts, which }: +{ lib, stdenv, fetchFromGitHub, fetchurl, buildPackages +, gzip, libiconv, nkf, perl, which +, skk-dicts +}: stdenv.mkDerivation { pname = "cmigemo"; @@ -21,7 +24,11 @@ stdenv.mkDerivation { makeFlags = [ "INSTALL=install" ]; - buildPhase = if stdenv.isDarwin then "make osx-all" else "make gcc-all"; + preBuild = '' + makeFlagsArray+=(FILTER_UTF8="${lib.getBin buildPackages.stdenv.cc.libc}/bin/iconv -t utf-8 -f cp932") + ''; + + buildFlags = [ (if stdenv.isDarwin then "osx-all" else "gcc-all") ]; installTargets = [ (if stdenv.isDarwin then "osx-install" else "gcc-install") ]; diff --git a/pkgs/tools/text/crowdin-cli/default.nix b/pkgs/tools/text/crowdin-cli/default.nix index 36b359365d54..72c7eccf1ad9 100644 --- a/pkgs/tools/text/crowdin-cli/default.nix +++ b/pkgs/tools/text/crowdin-cli/default.nix @@ -7,6 +7,8 @@ , installShellFiles , jre , makeWrapper +, crowdin-cli +, testVersion , unzip }: @@ -36,7 +38,10 @@ stdenv.mkDerivation rec { runHook postInstall ''; + passthru.tests.version = testVersion { package = crowdin-cli; }; + meta = with lib; { + mainProgram = "crowdin"; homepage = "https://github.com/crowdin/crowdin-cli/"; description = "A command-line client for the Crowdin API"; license = licenses.mit; diff --git a/pkgs/tools/text/dirdiff/default.nix b/pkgs/tools/text/dirdiff/default.nix index b49df59b29e1..e0385d332450 100644 --- a/pkgs/tools/text/dirdiff/default.nix +++ b/pkgs/tools/text/dirdiff/default.nix @@ -5,7 +5,7 @@ stdenv.mkDerivation rec { version = "2.1"; src = fetchurl { - url = "https://www.samba.org/ftp/paulus/${pname}-${version}.tar.gz"; + url = "mirror://samba/paulus/${pname}-${version}.tar.gz"; sha256 = "0lljd8av68j70733yshzzhxjr1lm0vgmbqsm8f02g03qsma3cdyb"; }; diff --git a/pkgs/tools/text/gnused/422.nix b/pkgs/tools/text/gnused/422.nix index 6b16f01f2fa1..15e57e319019 100644 --- a/pkgs/tools/text/gnused/422.nix +++ b/pkgs/tools/text/gnused/422.nix @@ -1,10 +1,11 @@ { lib, stdenv, fetchurl }: -stdenv.mkDerivation { - name = "gnused-4.2.2"; +stdenv.mkDerivation rec { + pname = "gnused"; + version = "4.2.2"; src = fetchurl { - url = "mirror://gnu/sed/sed-4.2.2.tar.bz2"; + url = "mirror://gnu/sed/sed-${version}.tar.bz2"; sha256 = "f048d1838da284c8bc9753e4506b85a1e0cc1ea8999d36f6995bcb9460cddbd7"; }; diff --git a/pkgs/tools/text/highlight/default.nix b/pkgs/tools/text/highlight/default.nix index 82d5eab5086f..57c607e69c6b 100644 --- a/pkgs/tools/text/highlight/default.nix +++ b/pkgs/tools/text/highlight/default.nix @@ -1,7 +1,5 @@ { lib, stdenv, fetchFromGitLab, getopt, lua, boost, pkg-config, swig, perl, gcc }: -with lib; - let self = stdenv.mkDerivation rec { pname = "highlight"; @@ -16,11 +14,12 @@ let enableParallelBuilding = true; - nativeBuildInputs = [ pkg-config swig perl ] ++ optional stdenv.isDarwin gcc; + nativeBuildInputs = [ pkg-config swig perl ] + ++ lib.optional stdenv.isDarwin gcc; buildInputs = [ getopt lua boost ]; - prePatch = '' + postPatch = '' substituteInPlace src/makefile \ --replace "shell pkg-config" "shell $PKG_CONFIG" substituteInPlace makefile \ @@ -36,15 +35,15 @@ let # This has to happen _before_ the main build because it does a # `make clean' for some reason. - preBuild = optionalString (!stdenv.isDarwin) '' + preBuild = lib.optionalString (!stdenv.isDarwin) '' make -C extras/swig $makeFlags perl ''; - postCheck = optionalString (!stdenv.isDarwin) '' + postCheck = lib.optionalString (!stdenv.isDarwin) '' perl -Iextras/swig extras/swig/testmod.pl ''; - preInstall = optionalString (!stdenv.isDarwin) '' + preInstall = lib.optionalString (!stdenv.isDarwin) '' mkdir -p $out/${perl.libPrefix} install -m644 extras/swig/highlight.{so,pm} $out/${perl.libPrefix} make -C extras/swig clean # Clean up intermediate files. diff --git a/pkgs/tools/text/mark/default.nix b/pkgs/tools/text/mark/default.nix index b7a4537addaf..229be7448c52 100644 --- a/pkgs/tools/text/mark/default.nix +++ b/pkgs/tools/text/mark/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "mark"; - version = "6.3"; + version = "6.4"; src = fetchFromGitHub { owner = "kovetskiy"; repo = "mark"; rev = version; - sha256 = "sha256-HKP8ZYhYDJizZ91q4MRwS00YIMvgB6EJ3au5rMg02hg="; + sha256 = "sha256-Ti7qxNb+7S67bXdvEWPyi/v/OAsAI4pd41dlF7GFjjo="; }; vendorSha256 = "sha256-y3Q8UebNbLy1jmxUC37mv+2l8dCU3b/Fk8XHn5u57p0="; diff --git a/pkgs/tools/text/mdcat/default.nix b/pkgs/tools/text/mdcat/default.nix index 67f69ecc71d2..ceea69808022 100644 --- a/pkgs/tools/text/mdcat/default.nix +++ b/pkgs/tools/text/mdcat/default.nix @@ -12,20 +12,20 @@ rustPlatform.buildRustPackage rec { pname = "mdcat"; - version = "0.23.2"; + version = "0.24.1"; src = fetchFromGitHub { owner = "lunaryorn"; repo = pname; rev = "mdcat-${version}"; - sha256 = "sha256-PM6bx7qzEx4He9aX4WRO7ad/f9+wzT+gPGXKwYwG8+A="; + sha256 = "sha256-fAbiPzyPaHy0KQb/twCovjgqIRzib7JZslb9FdVlQEg="; }; nativeBuildInputs = [ pkg-config asciidoctor installShellFiles ]; buildInputs = [ openssl ] ++ lib.optional stdenv.isDarwin Security; - cargoSha256 = "sha256-GL9WGoyM1++QFAR+bzj0XkjaRaDCWcbcahles5amNpk="; + cargoSha256 = "sha256-UgCFlzihBvZywDNir/92lub9R6yYPJSK8S4mlMk2sMk="; checkInputs = [ ansi2html ]; # Skip tests that use the network and that include files. diff --git a/pkgs/tools/text/poedit/default.nix b/pkgs/tools/text/poedit/default.nix index c53f521fddc4..4c45e5dbeea9 100644 --- a/pkgs/tools/text/poedit/default.nix +++ b/pkgs/tools/text/poedit/default.nix @@ -30,6 +30,7 @@ stdenv.mkDerivation rec { "--without-cpprest" "--with-boost-libdir=${boost.out}/lib" "CPPFLAGS=-I${nlohmann_json}/include/nlohmann/" + "LDFLAGS=-llucene++" ]; preFixup = '' diff --git a/pkgs/tools/text/proselint/default.nix b/pkgs/tools/text/proselint/default.nix index d00b71977a22..3f1b79c3e015 100644 --- a/pkgs/tools/text/proselint/default.nix +++ b/pkgs/tools/text/proselint/default.nix @@ -2,13 +2,13 @@ buildPythonApplication rec { pname = "proselint"; - version = "0.12.0"; + version = "0.13.0"; doCheck = false; # fails to pass because it tries to run in home directory src = fetchurl { url = "mirror://pypi/p/proselint/${pname}-${version}.tar.gz"; - sha256 = "2a98d9c14382d94ed9122a6c0b0657a814cd5c892c77d9477309fc99f86592e6"; + sha256 = "7dd2b63cc2aa390877c4144fcd3c80706817e860b017f04882fbcd2ab0852a58"; }; propagatedBuildInputs = [ click future six ]; diff --git a/pkgs/tools/text/sgml/jade/default.nix b/pkgs/tools/text/sgml/jade/default.nix index 338520b4df2b..c599375bc1cc 100644 --- a/pkgs/tools/text/sgml/jade/default.nix +++ b/pkgs/tools/text/sgml/jade/default.nix @@ -11,7 +11,7 @@ stdenv.mkDerivation rec { }; patchsrc = fetchurl { - url = "http://ftp.debian.org/debian/pool/main/j/jade/jade_${version}-${debpatch}.diff.gz"; + url = "mirror://debian/pool/main/j/jade/jade_${version}-${debpatch}.diff.gz"; sha256 = "8e94486898e3503308805f856a65ba5b499a6f21994151270aa743de48305464"; }; diff --git a/pkgs/tools/text/snippetpixie/default.nix b/pkgs/tools/text/snippetpixie/default.nix index e66a5404f439..7102977e8eee 100644 --- a/pkgs/tools/text/snippetpixie/default.nix +++ b/pkgs/tools/text/snippetpixie/default.nix @@ -88,5 +88,6 @@ stdenv.mkDerivation rec { license = licenses.gpl2Plus; maintainers = with maintainers; [ ianmjones ] ++ teams.pantheon.members; platforms = platforms.linux; + mainProgram = "com.github.bytepixie.snippetpixie"; }; } diff --git a/pkgs/tools/text/xml/basex/default.nix b/pkgs/tools/text/xml/basex/default.nix index 0e2c8b824f5e..92fde60c23c0 100644 --- a/pkgs/tools/text/xml/basex/default.nix +++ b/pkgs/tools/text/xml/basex/default.nix @@ -1,18 +1,18 @@ -{ lib, stdenv, fetchurl, unzip, jre, coreutils, makeDesktopItem }: +{ lib, stdenv, fetchurl, unzip, jre, coreutils, makeDesktopItem, copyDesktopItems }: stdenv.mkDerivation rec { pname = "basex"; - version = "9.4.3"; + version = "9.6.3"; src = fetchurl { url = "http://files.basex.org/releases/${version}/BaseX${builtins.replaceStrings ["."] [""] version}.zip"; - hash = "sha256-IZhRg2JcYQXQKU/lYZpLLcsSdjZZO+toY5yvk+RKUCY="; + hash = "sha256-OlIAyGUQKrl+Zu79p6cahHpx59zLozGkUDAEvykGN6Y="; }; - nativeBuildInputs = [ unzip ]; + nativeBuildInputs = [ unzip copyDesktopItems ]; buildInputs = [ jre ]; - desktopItem = makeDesktopItem { + desktopItems = lib.optional (!stdenv.isDarwin) (makeDesktopItem { name = "basex"; exec = "basexgui %f"; icon = "${./basex.svg}"; # icon copied from Ubuntu basex package @@ -21,22 +21,21 @@ stdenv.mkDerivation rec { genericName = "XML database tool"; categories = "Development;Utility;Database"; mimeType = "text/xml"; - }; + }); dontBuild = true; installPhase = '' + runHook preInstall + # Remove Windows batch files (unclutter $out/bin) rm ./bin/*.bat - mkdir -p "$out/share/basex" "$out/share/applications" + mkdir -p "$out/share/basex" cp -R bin etc lib webapp src BaseX.jar "$out" cp -R readme.txt webapp "$out/share/basex" - # Install desktop file - cp "$desktopItem"/share/applications/* "$out/share/applications/" - # Use substitutions instead of wrapper scripts for file in "$out"/bin/*; do sed -i -e "s|/usr/bin/env bash|${stdenv.shell}|" \ @@ -47,6 +46,8 @@ stdenv.mkDerivation rec { -e "s|echo|${coreutils}/bin/echo|" \ "$file" done + + runHook postInstall ''; meta = with lib; { @@ -60,7 +61,7 @@ stdenv.mkDerivation rec { ''; homepage = "https://basex.org/"; license = licenses.bsd3; - platforms = platforms.linux; + platforms = platforms.unix; maintainers = [ maintainers.bjornfor ]; }; } diff --git a/pkgs/tools/typesetting/asciidoctor/Gemfile.lock b/pkgs/tools/typesetting/asciidoctor/Gemfile.lock index 3240f65167e1..e7a1bdcfd800 100644 --- a/pkgs/tools/typesetting/asciidoctor/Gemfile.lock +++ b/pkgs/tools/typesetting/asciidoctor/Gemfile.lock @@ -2,17 +2,17 @@ GEM remote: https://rubygems.org/ specs: Ascii85 (1.1.0) - addressable (2.7.0) + addressable (2.8.0) public_suffix (>= 2.0.2, < 5.0) afm (0.2.2) - asciidoctor (2.0.15) - asciidoctor-diagram (2.1.2) + asciidoctor (2.0.16) + asciidoctor-diagram (2.2.1) asciidoctor (>= 1.5.7, < 3.x) - asciidoctor-diagram-ditaamini (~> 1.0.0) + asciidoctor-diagram-ditaamini (~> 1.0) asciidoctor-diagram-plantuml (~> 1.2021) rexml - asciidoctor-diagram-ditaamini (1.0.0) - asciidoctor-diagram-plantuml (1.2021.7) + asciidoctor-diagram-ditaamini (1.0.1) + asciidoctor-diagram-plantuml (1.2021.8) asciidoctor-epub3 (1.5.1) asciidoctor (>= 1.5.6, < 3.0.0) gepub (~> 1.0.0) @@ -21,7 +21,7 @@ GEM asciidoctor (~> 2.0) asciimath (~> 2.0) mathematical (~> 1.6.0) - asciidoctor-pdf (1.6.0) + asciidoctor-pdf (1.6.1) asciidoctor (~> 2.0) concurrent-ruby (~> 1.1) prawn (~> 2.4.0) @@ -35,25 +35,25 @@ GEM asciidoctor (>= 2.0.0, < 3.0.0) concurrent-ruby (~> 1.0) thread_safe (~> 0.3.5) - asciimath (2.0.2) + asciimath (2.0.3) coderay (1.1.3) concurrent-ruby (1.1.9) - css_parser (1.9.0) + css_parser (1.10.0) addressable - gepub (1.0.13) - nokogiri (>= 1.8.2, < 1.12) + gepub (1.0.15) + nokogiri (>= 1.8.2, < 2.0) rubyzip (> 1.1.1, < 2.4) hashery (2.1.2) - i18n (1.8.10) + i18n (1.8.11) concurrent-ruby (~> 1.0) mathematical (1.6.14) ruby-enum (~> 0.4) mime-types (3.3.1) mime-types-data (~> 3.2015) - mime-types-data (3.2021.0225) - mini_portile2 (2.5.3) - nokogiri (1.11.7) - mini_portile2 (~> 2.5.0) + mime-types-data (3.2021.0901) + mini_portile2 (2.6.1) + nokogiri (1.12.5) + mini_portile2 (~> 2.6.1) racc (~> 1.4) pdf-core (0.9.0) pdf-reader (2.5.0) @@ -79,13 +79,13 @@ GEM prawn (~> 2.2) public_suffix (4.0.6) pygments.rb (2.2.0) - racc (1.5.2) + racc (1.6.0) rexml (3.2.5) - rouge (3.26.0) + rouge (3.26.1) ruby-enum (0.9.0) i18n ruby-rc4 (0.1.5) - rubyzip (2.3.0) + rubyzip (2.3.2) safe_yaml (1.0.5) thread_safe (0.3.6) treetop (1.6.11) @@ -107,4 +107,4 @@ DEPENDENCIES rouge BUNDLED WITH - 2.1.4 + 2.2.24 diff --git a/pkgs/tools/typesetting/asciidoctor/gemset.nix b/pkgs/tools/typesetting/asciidoctor/gemset.nix index 6fe57ff48565..b227121d6b86 100644 --- a/pkgs/tools/typesetting/asciidoctor/gemset.nix +++ b/pkgs/tools/typesetting/asciidoctor/gemset.nix @@ -5,10 +5,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1fvchp2rhp2rmigx7qglf69xvjqvzq7x0g49naliw29r2bz656sy"; + sha256 = "022r3m9wdxljpbya69y2i3h9g3dhhfaqzidf95m6qjzms792jvgp"; type = "gem"; }; - version = "2.7.0"; + version = "2.8.0"; }; afm = { groups = ["default"]; @@ -35,10 +35,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0k3lijm4dmiz977bfmpclk5glj5jwv7bidamwwwywm60ywb0n4n4"; + sha256 = "10h4pmmkbcrpy7bn76wxzkb0hriabh1k3ii1g8lm0mdji5drlhq2"; type = "gem"; }; - version = "2.0.15"; + version = "2.0.16"; }; asciidoctor-diagram = { dependencies = ["asciidoctor" "asciidoctor-diagram-ditaamini" "asciidoctor-diagram-plantuml" "rexml"]; @@ -46,30 +46,30 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "09ci775f7y7d6spn0fl5wfmfyxianjp4z0p3fwcrzajy63f381v9"; + sha256 = "1z1ilpczjaydhcwpz3yygn03yrx2ljjj55xczwkrlb8rzgh03br3"; type = "gem"; }; - version = "2.1.2"; + version = "2.2.1"; }; asciidoctor-diagram-ditaamini = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1frnjz0j00v5hqp5macgnn6jq77jcpjy2l6hqmn5jn5ds7bmi2rl"; + sha256 = "1nva5n6nyns0xp77d1dxng1rjhc8ma6gyd8hczjq3h9qqxcw2q4h"; type = "gem"; }; - version = "1.0.0"; + version = "1.0.1"; }; asciidoctor-diagram-plantuml = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1kcxwbaancxfq08fr7syg8mxsi97jiczxyp4an2x0ymq3mkss0k8"; + sha256 = "0n018kmqzapf5y1bacb5yyvb9jfwxdkfqnviwxivwz9322b9w6j7"; type = "gem"; }; - version = "1.2021.7"; + version = "1.2021.8"; }; asciidoctor-epub3 = { dependencies = ["asciidoctor" "gepub" "mime-types"]; @@ -99,10 +99,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0sxfz3qp2j76jlab7fb1d1ylbf0h2nnbkhg019qqch5wkd4k1iw9"; + sha256 = "17d3fa6ix6r5ikydqz41r620mm98s076wdg4w6ydsr655r7mvnpk"; type = "gem"; }; - version = "1.6.0"; + version = "1.6.1"; }; asciidoctor-revealjs = { dependencies = ["asciidoctor" "concurrent-ruby" "thread_safe"]; @@ -120,10 +120,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1yq9av7rh493xqmx4cq3fjl0c6d8njxp53qw4hg2d3xkyn2lyfc5"; + sha256 = "0h4fz93pf96y5syxwpv0vibjf7lidv2718ikpvyd2vy8c1am8zyn"; type = "gem"; }; - version = "2.0.2"; + version = "2.0.3"; }; coderay = { groups = ["default"]; @@ -151,10 +151,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0xs4ind9xd099rb52b73pch8ha143dl8bhivqsbba4wrvxpbx751"; + sha256 = "1q8gj3wkc2mbzsqw5zcsr3kyzrrb2pda03pi769rjbvqr94g3bm5"; type = "gem"; }; - version = "1.9.0"; + version = "1.10.0"; }; gepub = { dependencies = ["nokogiri" "rubyzip"]; @@ -162,10 +162,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "01q33rkvqrhxqm8zgkhgcqhrqdfzgxswxfgiagdjxw67qdn1pids"; + sha256 = "08fny807zd4700f263ckc76bladjipsniyk3clv8a7x76x3fqshx"; type = "gem"; }; - version = "1.0.13"; + version = "1.0.15"; }; hashery = { groups = ["default"]; @@ -183,10 +183,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0g2fnag935zn2ggm5cn6k4s4xvv53v2givj1j90szmvavlpya96a"; + sha256 = "0vdd1kii40qhbr9n8qx71k2gskq6rkl8ygy8hw5hfj8bb5a364xf"; type = "gem"; }; - version = "1.8.10"; + version = "1.8.11"; }; mathematical = { dependencies = ["ruby-enum"]; @@ -215,20 +215,20 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1phcq7z0zpipwd7y4fbqmlaqghv07fjjgrx99mwq3z3n0yvy7fmi"; + sha256 = "1z5wvk6qi4ws1kjh7xn1rfirqw5m72bwvqacck1fjpbh33pcrwxv"; type = "gem"; }; - version = "3.2021.0225"; + version = "3.2021.0901"; }; mini_portile2 = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1ad0mli9rc0f17zw4ibp24dbj1y39zkykijsjmnzl4gwpg5s0j6k"; + sha256 = "1lvxm91hi0pabnkkg47wh1siv56s6slm2mdq1idfm86dyfidfprq"; type = "gem"; }; - version = "2.5.3"; + version = "2.6.1"; }; nokogiri = { dependencies = ["mini_portile2" "racc"]; @@ -236,10 +236,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1vrn31385ix5k9b0yalnlzv360isv6dincbcvi8psllnwz4sjxj9"; + sha256 = "1v02g7k7cxiwdcahvlxrmizn3avj2q6nsjccgilq1idc89cr081b"; type = "gem"; }; - version = "1.11.7"; + version = "1.12.5"; }; pdf-core = { groups = ["default"]; @@ -352,10 +352,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "178k7r0xn689spviqzhvazzvxfq6fyjldxb3ywjbgipbfi4s8j1g"; + sha256 = "0la56m0z26j3mfn1a9lf2l03qx1xifanndf9p3vx1azf6sqy7v9d"; type = "gem"; }; - version = "1.5.2"; + version = "1.6.0"; }; rexml = { groups = ["default"]; @@ -372,10 +372,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0b4b300i3m4m4kw7w1n9wgxwy16zccnb7271miksyzd0wq5b9pm3"; + sha256 = "197k0vskf72wxx0gzwld2jzg27bb7982xlvnzy9adlvkzp7nh8vf"; type = "gem"; }; - version = "3.26.0"; + version = "3.26.1"; }; ruby-enum = { dependencies = ["i18n"]; @@ -403,10 +403,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0590m2pr9i209pp5z4mx0nb1961ishdiqb28995hw1nln1d1b5ji"; + sha256 = "0grps9197qyxakbpw02pda59v45lfgbgiyw48i0mq9f2bn9y6mrz"; type = "gem"; }; - version = "2.3.0"; + version = "2.3.2"; }; safe_yaml = { groups = ["default"]; diff --git a/pkgs/tools/typesetting/lowdown/default.nix b/pkgs/tools/typesetting/lowdown/default.nix index 32907ea3fb75..1cb9c8d40177 100644 --- a/pkgs/tools/typesetting/lowdown/default.nix +++ b/pkgs/tools/typesetting/lowdown/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "lowdown"; - version = "0.9.2"; + version = "0.10.0"; outputs = [ "out" "lib" "dev" "man" ]; src = fetchurl { url = "https://kristaps.bsd.lv/lowdown/snapshots/lowdown-${version}.tar.gz"; - sha512 = "2dnjyx3q46n7v1wl46vfgs9rhb3kvhijsd3ydq6amdf6vlf4mf1zsiakd5iycdh0i799zq61yspsibc87mcrs8l289lnwl955avs068"; + sha512 = "3gq6awxvkz2hb8xzcwqhdhdqgspvqjfzm50bq9i29qy2iisq9vzb91bdp3f4q2sqcmk3gms44xyxyn3ih2hwlzsnk0f5prjzyg97fjj"; }; nativeBuildInputs = [ which ] diff --git a/pkgs/tools/typesetting/pdftk/legacy.nix b/pkgs/tools/typesetting/pdftk/legacy.nix index 3c4d042097ff..189978870376 100644 --- a/pkgs/tools/typesetting/pdftk/legacy.nix +++ b/pkgs/tools/typesetting/pdftk/legacy.nix @@ -1,10 +1,11 @@ { fetchurl, lib, stdenv, gcj, unzip }: -stdenv.mkDerivation { - name = "pdftk-2.02"; +stdenv.mkDerivation rec { + pname = "pdftk"; + version = "2.02"; src = fetchurl { - url = "https://www.pdflabs.com/tools/pdftk-the-pdf-toolkit/pdftk-2.02-src.zip"; + url = "https://www.pdflabs.com/tools/pdftk-the-pdf-toolkit/pdftk-${version}-src.zip"; sha256 = "1hdq6zm2dx2f9h7bjrp6a1hfa1ywgkwydp14i2sszjiszljnm3qi"; }; @@ -36,7 +37,7 @@ stdenv.mkDerivation { description = "Simple tool for doing everyday things with PDF documents"; homepage = "https://www.pdflabs.com/tools/pdftk-server/"; license = lib.licenses.gpl2; - maintainers = with lib.maintainers; [raskin]; + maintainers = with lib.maintainers; [ raskin ]; platforms = with lib.platforms; linux; broken = true; # Broken on Hydra since 2020-08-24 }; diff --git a/pkgs/tools/typesetting/scdoc/default.nix b/pkgs/tools/typesetting/scdoc/default.nix index 1e6c86c19923..c64136ad6b98 100644 --- a/pkgs/tools/typesetting/scdoc/default.nix +++ b/pkgs/tools/typesetting/scdoc/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "scdoc"; - version = "1.11.1"; + version = "1.11.2"; src = fetchFromSourcehut { owner = "~sircmpwn"; repo = pname; rev = version; - sha256 = "1g37j847j3h4a4qbbfbr6vvsxpifj9v25jgv25nd71d1n0dxlhvk"; + sha256 = "07c2vmdgqifbynm19zjnrk7h102pzrriv73izmx8pmd7b3xl5mfq"; }; postPatch = '' diff --git a/pkgs/tools/typesetting/tex/pgf/1.x.nix b/pkgs/tools/typesetting/tex/pgf/1.x.nix index efaf0e0fe1b3..618f936d8bf8 100644 --- a/pkgs/tools/typesetting/tex/pgf/1.x.nix +++ b/pkgs/tools/typesetting/tex/pgf/1.x.nix @@ -1,10 +1,11 @@ -{lib, stdenv, fetchurl}: +{ lib, stdenv, fetchurl }: -stdenv.mkDerivation { - name = "pgf-1.18"; +stdenv.mkDerivation rec { + pname = "pgf"; + version = "1.18"; src = fetchurl { - url = "mirror://sourceforge/pgf/pgf-1.18.tar.gz"; + url = "mirror://sourceforge/pgf/pgf-${version}.tar.gz"; sha256 = "0s6b8rx9yfxcjjg18vx1mphnwbd28fl5lnq0dasjz40pp3ypwdjv"; }; diff --git a/pkgs/tools/typesetting/tex/pgf/2.x.nix b/pkgs/tools/typesetting/tex/pgf/2.x.nix index 9661ec3324be..b8a3f2f63660 100644 --- a/pkgs/tools/typesetting/tex/pgf/2.x.nix +++ b/pkgs/tools/typesetting/tex/pgf/2.x.nix @@ -1,10 +1,11 @@ -{lib, stdenv, fetchurl}: +{ lib, stdenv, fetchurl }: -stdenv.mkDerivation { - name = "pgf-2.00"; +stdenv.mkDerivation rec { + pname = "pgf"; + version = "2.00"; src = fetchurl { - url = "mirror://sourceforge/pgf/pgf-2.00.tar.gz"; + url = "mirror://sourceforge/pgf/pgf-${version}.tar.gz"; sha256 = "0j57niag4jb2k0iyrvjsannxljc3vkx0iag7zd35ilhiy4dh6264"; }; diff --git a/pkgs/tools/typesetting/tex/pgf/3.x.nix b/pkgs/tools/typesetting/tex/pgf/3.x.nix index b33f05d34a78..9af41ff1f43f 100644 --- a/pkgs/tools/typesetting/tex/pgf/3.x.nix +++ b/pkgs/tools/typesetting/tex/pgf/3.x.nix @@ -1,10 +1,11 @@ -{lib, stdenv, fetchurl, unzip}: +{ lib, stdenv, fetchurl, unzip }: -stdenv.mkDerivation { - name = "pgf-3.00"; +stdenv.mkDerivation rec { + pname = "pgf"; + version = "3.0.0"; src = fetchurl { - url = "mirror://sourceforge/project/pgf/pgf/version%203.0.0/pgf_3.0.0.tds.zip"; + url = "mirror://sourceforge/project/pgf/pgf/version%20${version}/pgf_${version}.tds.zip"; sha256 = "0kj769hyp4z2zmdv3f8xv443wcfqn5nkkbzxzqgfxjizlz81aav7"; }; diff --git a/pkgs/tools/virtualization/extra-container/default.nix b/pkgs/tools/virtualization/extra-container/default.nix index ad0601a5243a..dad7a3d1be72 100644 --- a/pkgs/tools/virtualization/extra-container/default.nix +++ b/pkgs/tools/virtualization/extra-container/default.nix @@ -29,7 +29,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "Run declarative containers without full system rebuilds"; - homepage = https://github.com/erikarvstedt/extra-container; + homepage = "https://github.com/erikarvstedt/extra-container"; license = licenses.mit; platforms = platforms.linux; maintainers = [ maintainers.earvstedt ]; diff --git a/pkgs/tools/virtualization/lxd-image-server/default.nix b/pkgs/tools/virtualization/lxd-image-server/default.nix new file mode 100644 index 000000000000..3992f425a3cd --- /dev/null +++ b/pkgs/tools/virtualization/lxd-image-server/default.nix @@ -0,0 +1,47 @@ +{ lib +, openssl +, rsync +, python3 +, fetchFromGitHub +}: + +python3.pkgs.buildPythonApplication rec { + pname = "lxd-image-server"; + version = "0.0.4"; + + src = fetchFromGitHub { + owner = "Avature"; + repo = "lxd-image-server"; + rev = version; + sha256 = "yx8aUmMfSzyWaM6M7+WcL6ouuWwOpqLzODWSdNgwCwo="; + }; + + patches = [ + ./state.patch + ./run.patch + ]; + + propagatedBuildInputs = with python3.pkgs; [ + setuptools + attrs + click + inotify + cryptography + confight + python-pidfile + ]; + + makeWrapperArgs = [ + ''--prefix PATH ':' "${lib.makeBinPath [ openssl rsync ]}"'' + ]; + + doCheck = false; + + meta = with lib; { + description = "Creates and manages a simplestreams lxd image server on top of nginx"; + homepage = "https://github.com/Avature/lxd-image-server"; + license = licenses.apsl20; + platforms = platforms.unix; + maintainers = with maintainers; [ mkg20001 ]; + }; +} diff --git a/pkgs/tools/virtualization/lxd-image-server/run.patch b/pkgs/tools/virtualization/lxd-image-server/run.patch new file mode 100644 index 000000000000..bd1172c1f864 --- /dev/null +++ b/pkgs/tools/virtualization/lxd-image-server/run.patch @@ -0,0 +1,25 @@ +From df2ce9fb48a3790407646a388e0d220a75496c52 Mon Sep 17 00:00:00 2001 +From: =?UTF-8?q?Maciej=20Kr=C3=BCger?= <mkg20001@gmail.com> +Date: Wed, 3 Nov 2021 14:23:38 +0100 +Subject: [PATCH] /var/run -> /run + +--- + lxd_image_server/tools/config.py | 2 +- + 1 file changed, 1 insertion(+), 1 deletion(-) + +diff --git a/lxd_image_server/tools/config.py b/lxd_image_server/tools/config.py +index 60e8973..23d392a 100644 +--- a/lxd_image_server/tools/config.py ++++ b/lxd_image_server/tools/config.py +@@ -9,7 +9,7 @@ import confight + class Config(): + + _lock = Lock() +- pidfile = Path('/var/run/lxd-image-server/pidfile') ++ pidfile = Path('/run/lxd-image-server/pidfile') + data = {} + + @classmethod +-- +2.33.0 + diff --git a/pkgs/tools/virtualization/lxd-image-server/state.patch b/pkgs/tools/virtualization/lxd-image-server/state.patch new file mode 100644 index 000000000000..c6677ea48e9c --- /dev/null +++ b/pkgs/tools/virtualization/lxd-image-server/state.patch @@ -0,0 +1,49 @@ +From 17a1e09eaf8957174425d05200be9ee3e77229f9 Mon Sep 17 00:00:00 2001 +From: =?UTF-8?q?Maciej=20Kr=C3=BCger?= <mkg20001@gmail.com> +Date: Thu, 21 Oct 2021 00:39:08 +0200 +Subject: [PATCH] Remove system-state changing code + +This is already done by the module on nixOS +--- + lxd_image_server/cli.py | 15 +-------------- + 1 file changed, 1 insertion(+), 14 deletions(-) + +diff --git a/lxd_image_server/cli.py b/lxd_image_server/cli.py +index d276e6d..f759bf2 100644 +--- a/lxd_image_server/cli.py ++++ b/lxd_image_server/cli.py +@@ -140,30 +140,17 @@ def reload_config(): + @cli.command() + @click.option('--root_dir', default='/var/www/simplestreams', + show_default=True) +-@click.option('--ssl_dir', default='/etc/nginx/ssl', show_default=True, +- callback=lambda ctx, param, val: Path(val)) + @click.pass_context +-def init(ctx, root_dir, ssl_dir): ++def init(ctx, root_dir): + if not Path(root_dir).exists(): + logger.error('Root directory does not exists') + else: +- if not ssl_dir.exists(): +- os.makedirs(str(ssl_dir)) +- +- if not (ssl_dir / 'nginx.key').exists(): +- generate_cert(str(ssl_dir)) +- + img_dir = str(Path(root_dir, 'images')) + streams_dir = str(Path(root_dir, 'streams/v1')) + if not Path(img_dir).exists(): + os.makedirs(img_dir) + if not Path(streams_dir).exists(): + os.makedirs(streams_dir) +- conf_path = Path('/etc/nginx/sites-enabled/simplestreams.conf') +- if not conf_path.exists(): +- conf_path.symlink_to( +- '/etc/nginx/sites-available/simplestreams.conf') +- os.system('nginx -s reload') + + if not Path(root_dir, 'streams', 'v1', 'images.json').exists(): + ctx.invoke(update, img_dir=Path(root_dir, 'images'), +-- +2.33.0 + diff --git a/pkgs/tools/wayland/wlogout/default.nix b/pkgs/tools/wayland/wlogout/default.nix index 2625405808cc..d9d442126010 100644 --- a/pkgs/tools/wayland/wlogout/default.nix +++ b/pkgs/tools/wayland/wlogout/default.nix @@ -9,6 +9,7 @@ , libxkbcommon , wayland , wayland-protocols +, gtk-layer-shell }: stdenv.mkDerivation rec { @@ -28,6 +29,7 @@ stdenv.mkDerivation rec { libxkbcommon wayland wayland-protocols + gtk-layer-shell ]; postPatch = '' diff --git a/pkgs/top-level/aliases.nix b/pkgs/top-level/aliases.nix index 37455858c0a0..62efca5b8d00 100644 --- a/pkgs/top-level/aliases.nix +++ b/pkgs/top-level/aliases.nix @@ -202,6 +202,8 @@ mapAliases ({ dnnl = oneDNN; # added 2020-04-22 docbook5_xsl = docbook_xsl_ns; # added 2018-04-25 docbook_xml_xslt = docbook_xsl; # added 2018-04-25 + dolphinEmu = dolphin-emu; # added 2021-11-10 + dolphinEmuMaster = dolphin-emu-beta; # added 2021-11-10 dotnet-netcore = dotnet-runtime; # added 2021-10-07 double_conversion = double-conversion; # 2017-11-22 docker_compose = docker-compose; # 2018-11-10 @@ -213,6 +215,7 @@ mapAliases ({ ec2_ami_tools = ec2-ami-tools; # added 2021-10-08 ec2_api_tools = ec2-api-tools; # added 2021-10-08 elasticmq = throw "elasticmq has been removed in favour of elasticmq-server-bin"; # added 2021-01-17 + elasticsearch7-oss = throw "elasticsearch7-oss has been removed, as the distribution is no longer provided by upstream. https://github.com/NixOS/nixpkgs/pull/114456"; # added 2021-06-09 emacsPackagesGen = emacsPackagesFor; # added 2018-08-18 emacsPackagesNgGen = emacsPackagesFor; # added 2018-08-18 emacsPackagesNgFor = emacsPackagesFor; # added 2019-08-07 @@ -266,6 +269,7 @@ mapAliases ({ and has only been used for old fontconfig caches. ''; foomatic_filters = foomatic-filters; # 2016-08 + fscryptctl-experimental = throw "The package fscryptctl-experimental has been removed. Please switch to fscryptctl."; # 2021-11-07 fsharp41 = throw "fsharp41 has been removed, please use dotnet-sdk_5 or later"; fuse_exfat = exfat; # 2015-09-11 fuseki = apache-jena-fuseki; # added 2018-04-25 @@ -376,6 +380,7 @@ mapAliases ({ json_glib = json-glib; # added 2018-02-25 kdecoration-viewer = throw "kdecoration-viewer has been removed from nixpkgs, as there is no upstream activity"; # 2020-06-16 k9copy = throw "k9copy has been removed from nixpkgs, as there is no upstream activity"; # 2020-11-06 + kibana7-oss = throw "kibana7-oss has been removed, as the distribution is no longer provided by upstream. https://github.com/NixOS/nixpkgs/pull/114456"; # added 2021-06-09 kodiGBM = kodi-gbm; kodiPlain = kodi; kodiPlainWayland = kodi-wayland; @@ -429,6 +434,7 @@ mapAliases ({ libintlOrEmpty = lib.optional (!stdenv.isLinux || stdenv.hostPlatform.libc != "glibc") gettext; # added 2018-03-14 libjpeg_drop = libjpeg_original; # added 2020-06-05 libjson_rpc_cpp = libjson-rpc-cpp; # added 2017-02-28 + libkml = throw "libkml has been removed from nixpkgs, as it's abandoned and no package needed it."; # added 2021-11-09 liblapackWithoutAtlas = lapack-reference; # added 2018-11-05 liblastfm = libsForQt5.liblastfm; # added 2020-06-14 liblrdf = lrdf; # added 2018-04-25 @@ -468,6 +474,7 @@ mapAliases ({ linuxPackages_5_4 = linuxKernel.packages.linux_5_4; linuxPackages_5_10 = linuxKernel.packages.linux_5_10; linuxPackages_5_14 = linuxKernel.packages.linux_5_14; + linuxPackages_5_15 = linuxKernel.packages.linux_5_15; linux_mptcp_95 = linuxKernel.kernels.linux_mptcp_95; linux_rpi1 = linuxKernel.kernels.linux_rpi1; @@ -484,6 +491,7 @@ mapAliases ({ linux-rt_5_10 = linuxKernel.kernels.linux_rt_5_10; linux-rt_5_11 = linuxKernel.kernels.linux_rt_5_11; linux_5_14 = linuxKernel.kernels.linux_5_14; + linux_5_15 = linuxKernel.kernels.linux_5_15; # added 2020-04-04 linuxPackages_testing_hardened = throw "linuxPackages_testing_hardened has been removed, please use linuxPackages_latest_hardened"; @@ -586,8 +594,9 @@ mapAliases ({ nfsUtils = nfs-utils; # added 2014-12-06 nginxUnstable = nginxMainline; # added 2018-04-25 nilfs_utils = nilfs-utils; # added 2018-04-25 + nix-direnv-flakes = nix-direnv; nix-review = nixpkgs-review; # added 2019-12-22 - nixFlakes = nixUnstable; # added 2021-05-21 + nixFlakes = nixStable; # added 2021-05-21 nmap_graphical = nmap-graphical; # added 2017-01-19 nmap-unfree = nmap; # added 2021-04-06 nologin = shadow; # added 2018-04-25 diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index da63d524c632..869f73f5e93d 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -321,7 +321,7 @@ with pkgs; inherit (darwin.apple_sdk.frameworks) AppKit IOKit; }; - mix2nix = callPackage ../development/tools/mix2nix/default.nix { }; + mix2nix = callPackage ../development/tools/mix2nix { }; prisma-engines = callPackage ../development/tools/database/prisma-engines { inherit (darwin.apple_sdk.frameworks) Security; @@ -493,7 +493,7 @@ with pkgs; prefer-remote-fetch = import ../build-support/prefer-remote-fetch; - global-platform-pro = callPackage ../development/tools/global-platform-pro/default.nix { }; + global-platform-pro = callPackage ../development/tools/global-platform-pro { }; graph-easy = callPackage ../tools/graphics/graph-easy { }; @@ -862,6 +862,8 @@ with pkgs; aescrypt = callPackage ../tools/misc/aescrypt { }; + aether-lv2 = callPackage ../applications/audio/aether-lv2 { }; + acme-client = callPackage ../tools/networking/acme-client { stdenv = gccStdenv; }; adriconf = callPackage ../tools/graphics/adriconf { }; @@ -982,6 +984,8 @@ with pkgs; tnat64 = callPackage ../tools/networking/tnat64 { }; + topicctl = callPackage ../tools/misc/topicctl { }; + veikk-linux-driver-gui = libsForQt5.callPackage ../tools/misc/veikk-linux-driver-gui { }; ventoy-bin = callPackage ../tools/cd-dvd/ventoy-bin { }; @@ -1022,10 +1026,6 @@ with pkgs; cool-retro-term = libsForQt5.callPackage ../applications/terminal-emulators/cool-retro-term { }; - coreterminal = libsForQt5.callPackage ../applications/terminal-emulators/coreterminal { - inherit (lxqt) qtermwidget; - }; - ctx = callPackage ../applications/terminal-emulators/ctx { }; darktile = callPackage ../applications/terminal-emulators/darktile { }; @@ -1377,7 +1377,7 @@ with pkgs; awless = callPackage ../tools/virtualization/awless { }; - berglas = callPackage ../tools/admin/berglas/default.nix { }; + berglas = callPackage ../tools/admin/berglas { }; betterdiscordctl = callPackage ../tools/misc/betterdiscordctl { }; @@ -1433,6 +1433,8 @@ with pkgs; client = true; }); + antennas = callPackage ../servers/antennas { }; + apg = callPackage ../tools/security/apg { }; apt-dater = callPackage ../tools/package-management/apt-dater { @@ -1461,7 +1463,9 @@ with pkgs; bic = callPackage ../development/interpreters/bic { }; - binance = callPackage ../applications/misc/binance { }; + binance = callPackage ../applications/misc/binance { + electron = electron_12; + }; bit = callPackage ../applications/version-management/git-and-tools/bit { }; @@ -1469,6 +1473,8 @@ with pkgs; inherit (nodePackages) bitwarden-cli; + inherit (nodePackages) concurrently; + inherit (nodePackages) hyperspace-cli; bklk = callPackage ../applications/misc/bklk { }; @@ -1516,6 +1522,8 @@ with pkgs; certigo = callPackage ../tools/admin/certigo { }; + certipy = callPackage ../tools/security/certipy { }; + catcli = python3Packages.callPackage ../tools/filesystems/catcli { }; chezmoi = callPackage ../tools/misc/chezmoi { }; @@ -1535,8 +1543,6 @@ with pkgs; codeql = callPackage ../development/tools/analysis/codeql { }; - corearchiver = libsForQt5.callPackage ../tools/archivers/corearchiver { }; - container-linux-config-transpiler = callPackage ../development/tools/container-linux-config-transpiler { }; fedora-backgrounds = callPackage ../data/misc/fedora-backgrounds { }; @@ -1573,8 +1579,12 @@ with pkgs; cozy = callPackage ../applications/audio/cozy { }; + cpptoml = callPackage ../development/libraries/cpptoml { }; + cpuid = callPackage ../os-specific/linux/cpuid { }; + msr = callPackage ../os-specific/linux/msr { }; + ctrtool = callPackage ../tools/archivers/ctrtool { }; crowbar = callPackage ../tools/security/crowbar { }; @@ -1631,7 +1641,7 @@ with pkgs; ecdsautils = callPackage ../tools/security/ecdsautils { }; - echidna = haskell.lib.justStaticExecutables (haskellPackages.callPackage (../tools/security/echidna) { }); + echidna = haskell.lib.compose.justStaticExecutables (haskellPackages.callPackage (../tools/security/echidna) { }); sedutil = callPackage ../tools/security/sedutil { }; @@ -1665,7 +1675,7 @@ with pkgs; inherit (darwin.apple_sdk.frameworks) Security; }; - fitnesstrax = callPackage ../applications/misc/fitnesstrax/default.nix { }; + fitnesstrax = callPackage ../applications/misc/fitnesstrax { }; flavours = callPackage ../applications/misc/flavours { }; @@ -1781,7 +1791,7 @@ with pkgs; hime = callPackage ../tools/inputmethods/hime {}; - hinit = haskell.lib.justStaticExecutables haskellPackages.hinit; + hinit = haskell.lib.compose.justStaticExecutables haskellPackages.hinit; hostctl = callPackage ../tools/system/hostctl { }; @@ -2184,6 +2194,8 @@ with pkgs; bmake = callPackage ../development/tools/build-managers/bmake { }; + go-mk = callPackage ../development/tools/build-managers/go-mk { }; + boca = callPackage ../development/libraries/boca { }; bochs = callPackage ../applications/virtualization/bochs { @@ -2306,7 +2318,7 @@ with pkgs; cue2pops = callPackage ../tools/cd-dvd/cue2pops { }; - cabal2nix-unwrapped = haskell.lib.justStaticExecutables (haskell.lib.generateOptparseApplicativeCompletion "cabal2nix" haskellPackages.cabal2nix); + cabal2nix-unwrapped = haskell.lib.compose.justStaticExecutables (haskell.lib.compose.generateOptparseApplicativeCompletion "cabal2nix" haskellPackages.cabal2nix); cabal2nix = symlinkJoin { inherit (cabal2nix-unwrapped) name meta; @@ -2750,6 +2762,8 @@ with pkgs; gtk = gtk3; }; + dstp = callPackage ../development/tools/dstp { }; + dsvpn = callPackage ../applications/networking/dsvpn { }; dtools = callPackage ../development/tools/dtools { }; @@ -2924,7 +2938,7 @@ with pkgs; fsmark = callPackage ../tools/misc/fsmark { }; - futhark = haskell.lib.justStaticExecutables haskellPackages.futhark; + futhark = haskell.lib.compose.justStaticExecutables haskellPackages.futhark; inherit (nodePackages) fx; @@ -3319,6 +3333,8 @@ with pkgs; mq-cli = callPackage ../tools/system/mq-cli { }; + mrkd = with python3Packages; toPythonApplication mrkd; + n2n = callPackage ../tools/networking/n2n { }; nextdns = callPackage ../applications/networking/nextdns { }; @@ -3330,9 +3346,8 @@ with pkgs; nfstrace = callPackage ../tools/networking/nfstrace { }; nix-direnv = callPackage ../tools/misc/nix-direnv { }; - nix-direnv-flakes = callPackage ../tools/misc/nix-direnv { enableFlakes = true; }; - nix-output-monitor = haskell.lib.justStaticExecutables (haskellPackages.nix-output-monitor); + nix-output-monitor = haskell.lib.compose.justStaticExecutables (haskellPackages.nix-output-monitor); nix-template = callPackage ../tools/package-management/nix-template { inherit (darwin.apple_sdk.frameworks) Security; @@ -3378,6 +3393,8 @@ with pkgs; optar = callPackage ../tools/graphics/optar {}; + oni2 = callPackage ../applications/editors/oni2 { }; + obinskit = callPackage ../applications/misc/obinskit {}; odoo = callPackage ../applications/finance/odoo {}; @@ -3866,7 +3883,9 @@ with pkgs; inherit (darwin.apple_sdk.frameworks) Carbon IOKit; }; - cemu = qt5.callPackage ../applications/science/math/cemu { }; + cemu = qt5.callPackage ../applications/science/math/cemu { + stdenv = gcc9Stdenv; + }; isolyzer = callPackage ../tools/cd-dvd/isolyzer { }; @@ -4055,6 +4074,12 @@ with pkgs; libpinyin = callPackage ../development/libraries/libpinyin { }; + inherit (import ../development/libraries/libsbsms pkgs) + libsbsms + libsbsms_2_0_2 + libsbsms_2_3_0 + ; + libskk = callPackage ../development/libraries/libskk { inherit (gnome) gnome-common; }; @@ -4159,16 +4184,8 @@ with pkgs; qtbase = qt5.qtbase; }; - coregarage = libsForQt5.callPackage ../applications/misc/coregarage { }; - - coreshot = libsForQt5.callPackage ../tools/misc/coreshot { }; - c14 = callPackage ../applications/networking/c14 { }; - corehunt = libsForQt5.callPackage ../applications/misc/corehunt { }; - - coretoppings = libsForQt5.callPackage ../applications/misc/coretoppings { }; - certstrap = callPackage ../tools/security/certstrap { }; cfssl = callPackage ../tools/security/cfssl { }; @@ -4282,7 +4299,8 @@ with pkgs; cudatoolkit_11_1 cudatoolkit_11_2 cudatoolkit_11_3 - cudatoolkit_11_4; + cudatoolkit_11_4 + cudatoolkit_11_5; cudatoolkit = cudatoolkit_10; @@ -4295,7 +4313,9 @@ with pkgs; cudnn_cudatoolkit_11 cudnn_cudatoolkit_11_0 cudnn_cudatoolkit_11_1 - cudnn_cudatoolkit_11_2; + cudnn_cudatoolkit_11_2 + cudnn_cudatoolkit_11_3 + cudnn_cudatoolkit_11_4; cudnn = cudnn_cudatoolkit_10; @@ -4514,6 +4534,8 @@ with pkgs; tk = tk-8_5; }; + picoscope = callPackage ../applications/science/electronics/picoscope { }; + picotts = callPackage ../tools/audio/picotts { }; wgetpaste = callPackage ../tools/text/wgetpaste { }; @@ -4566,8 +4588,8 @@ with pkgs; dotnetfx40 = callPackage ../development/libraries/dotnetfx40 { }; - dolphinEmu = callPackage ../misc/emulators/dolphin-emu { }; - dolphinEmuMaster = qt5.callPackage ../misc/emulators/dolphin-emu/master.nix { + dolphin-emu = callPackage ../misc/emulators/dolphin-emu { }; + dolphin-emu-beta = qt5.callPackage ../misc/emulators/dolphin-emu/master.nix { inherit (darwin.apple_sdk.frameworks) CoreBluetooth ForceFeedback IOKit OpenGL; }; @@ -4758,7 +4780,7 @@ with pkgs; inherit (darwin.apple_sdk.frameworks) AppKit Security; }; - timeline = callPackage ../applications/office/timeline/default.nix { }; + timeline = callPackage ../applications/office/timeline { }; tsm-client = callPackage ../tools/backup/tsm-client { jdk8 = null; }; tsm-client-withGui = callPackage ../tools/backup/tsm-client { }; @@ -4783,7 +4805,7 @@ with pkgs; uudeview = callPackage ../tools/misc/uudeview { }; - uusi = haskell.lib.justStaticExecutables haskellPackages.uusi; + uusi = haskell.lib.compose.justStaticExecutables haskellPackages.uusi; uutils-coreutils = callPackage ../tools/misc/uutils-coreutils { inherit (python3Packages) sphinx; @@ -4859,7 +4881,7 @@ with pkgs; # The latest version used by elasticsearch, logstash, kibana and the the beats from elastic. # When updating make sure to update all plugins or they will break! elk6Version = "6.8.3"; - elk7Version = "7.10.2"; + elk7Version = "7.11.1"; elasticsearch6 = callPackage ../servers/search/elasticsearch/6.x.nix { util-linux = util-linuxMinimal; @@ -4874,11 +4896,6 @@ with pkgs; util-linux = util-linuxMinimal; jre_headless = jdk11_headless; # TODO: remove override https://github.com/NixOS/nixpkgs/pull/89731 }; - elasticsearch7-oss = callPackage ../servers/search/elasticsearch/7.x.nix { - enableUnfree = false; - util-linux = util-linuxMinimal; - jre_headless = jdk11_headless; # TODO: remove override https://github.com/NixOS/nixpkgs/pull/89731 - }; elasticsearch = elasticsearch6; elasticsearch-oss = elasticsearch6-oss; @@ -4891,7 +4908,7 @@ with pkgs; elasticsearch = elasticsearch6-oss; }; elasticsearch7Plugins = elasticsearchPlugins.override { - elasticsearch = elasticsearch7-oss; + elasticsearch = elasticsearch7; }; elasticsearch-curator = callPackage ../tools/admin/elasticsearch-curator { @@ -5383,6 +5400,8 @@ with pkgs; gandom-fonts = callPackage ../data/fonts/gandom-fonts { }; + gaphor = python3Packages.callPackage ../tools/misc/gaphor { }; + garmin-plugin = callPackage ../applications/misc/garmin-plugin {}; garmintools = callPackage ../development/libraries/garmintools {}; @@ -5681,7 +5700,9 @@ with pkgs; gitleaks = callPackage ../tools/security/gitleaks { }; - gitaly = callPackage ../applications/version-management/gitlab/gitaly { }; + gitaly = callPackage ../applications/version-management/gitlab/gitaly { + libgit2 = libgit2_1_1; # git2go only supports v1.1.x + }; gitstats = callPackage ../applications/version-management/gitstats { }; @@ -6318,7 +6339,7 @@ with pkgs; icemon = libsForQt5.callPackage ../applications/networking/icemon { }; - icepeak = haskell.lib.justStaticExecutables haskellPackages.icepeak; + icepeak = haskell.lib.compose.justStaticExecutables haskellPackages.icepeak; iceshelf = callPackage ../tools/backup/iceshelf { }; @@ -6417,6 +6438,8 @@ with pkgs; intermodal = callPackage ../tools/misc/intermodal { }; + internetarchive = with python3Packages; toPythonApplication internetarchive; + invidious = callPackage ../servers/invidious { # needs a specific version of lsquic lsquic = callPackage ../servers/invidious/lsquic.nix { }; @@ -6526,6 +6549,8 @@ with pkgs; jekyll = callPackage ../applications/misc/jekyll { }; + jet = callPackage ../development/tools/jet { }; + jfsutils = callPackage ../tools/filesystems/jfsutils { }; jhead = callPackage ../tools/graphics/jhead { }; @@ -6700,9 +6725,6 @@ with pkgs; enableUnfree = false; }; kibana7 = callPackage ../development/tools/misc/kibana/7.x.nix { }; - kibana7-oss = callPackage ../development/tools/misc/kibana/7.x.nix { - enableUnfree = false; - }; kibana = kibana6; kibana-oss = kibana6-oss; @@ -6794,10 +6816,6 @@ with pkgs; libscrypt = callPackage ../development/libraries/libscrypt { }; - libcsys = libsForQt5.callPackage ../development/libraries/libcsys { }; - - libcprime = libsForQt5.callPackage ../development/libraries/libcprime { }; - libcloudproviders = callPackage ../development/libraries/libcloudproviders { }; libcoap = callPackage ../applications/networking/libcoap { @@ -6989,6 +7007,8 @@ with pkgs; ministat = callPackage ../tools/misc/ministat { }; + mjolnir = callPackage ../servers/mjolnir { }; + mmv = callPackage ../tools/misc/mmv { }; mmv-go = callPackage ../tools/misc/mmv-go { }; @@ -7083,13 +7103,9 @@ with pkgs; nodejs_latest = nodejs-16_x; nodejs-slim_latest = nodejs-slim-16_x; - nodePackages_latest = dontRecurseIntoAttrs (callPackage ../development/node-packages/default.nix { - nodejs = nodejs_latest; - }); + nodePackages_latest = dontRecurseIntoAttrs nodejs_latest.pkgs; - nodePackages = dontRecurseIntoAttrs (callPackage ../development/node-packages/default.nix { - inherit nodejs; - }); + nodePackages = dontRecurseIntoAttrs nodejs.pkgs; np2kai = callPackage ../misc/emulators/np2kai { }; @@ -7356,6 +7372,8 @@ with pkgs; lxcfs = callPackage ../os-specific/linux/lxcfs { }; lxd = callPackage ../tools/admin/lxd { }; + lxd-image-server = callPackage ../tools/virtualization/lxd-image-server { }; + lzfse = callPackage ../tools/compression/lzfse { }; lzham = callPackage ../tools/compression/lzham { }; @@ -7380,7 +7398,7 @@ with pkgs; inherit (darwin.apple_sdk.frameworks) Foundation; }; - madlang = haskell.lib.justStaticExecutables haskellPackages.madlang; + madlang = haskell.lib.compose.justStaticExecutables haskellPackages.madlang; maeparser = callPackage ../development/libraries/maeparser { }; @@ -7831,7 +7849,7 @@ with pkgs; ngrep = callPackage ../tools/networking/ngrep { }; - neuron-notes = haskell.lib.justStaticExecutables (haskell.lib.generateOptparseApplicativeCompletion "neuron" haskellPackages.neuron); + neuron-notes = haskell.lib.compose.justStaticExecutables (haskell.lib.compose.generateOptparseApplicativeCompletion "neuron" haskellPackages.neuron); ngrok = ngrok-2; @@ -7877,7 +7895,7 @@ with pkgs; nvchecker = with python3Packages; toPythonApplication nvchecker; - nvfetcher = haskell.lib.justStaticExecutables haskellPackages.nvfetcher; + nvfetcher = haskell.lib.compose.justStaticExecutables haskellPackages.nvfetcher; miller = callPackage ../tools/text/miller { }; @@ -7990,9 +8008,7 @@ with pkgs; ntopng = callPackage ../tools/networking/ntopng { }; - ntp = callPackage ../tools/networking/ntp { - libcap = if stdenv.isLinux then libcap else null; - }; + ntp = callPackage ../tools/networking/ntp { }; numdiff = callPackage ../tools/text/numdiff { }; @@ -8053,6 +8069,10 @@ with pkgs; ocserv = callPackage ../tools/networking/ocserv { }; + octofetch = callPackage ../tools/misc/octofetch { + inherit (darwin.apple_sdk.frameworks) Security; + }; + oha = callPackage ../tools/networking/oha { inherit (darwin.apple_sdk.frameworks) Security; }; @@ -8083,7 +8103,7 @@ with pkgs; offlineimap = callPackage ../tools/networking/offlineimap { }; - ofono-phonesim = libsForQt5.callPackage ../development/tools/ofono-phonesim/default.nix { }; + ofono-phonesim = libsForQt5.callPackage ../development/tools/ofono-phonesim { }; ogdf = callPackage ../development/libraries/ogdf { }; @@ -8177,6 +8197,8 @@ with pkgs; opensm = callPackage ../tools/networking/opensm { }; + tinyssh = callPackage ../tools/networking/tinyssh { }; + opensshPackages = dontRecurseIntoAttrs (callPackage ../tools/networking/openssh {}); openssh = opensshPackages.openssh.override { @@ -8225,7 +8247,7 @@ with pkgs; update-dotdee = with python3Packages; toPythonApplication update-dotdee; - update-nix-fetchgit = haskell.lib.justStaticExecutables haskellPackages.update-nix-fetchgit; + update-nix-fetchgit = haskell.lib.compose.justStaticExecutables haskellPackages.update-nix-fetchgit; update-resolv-conf = callPackage ../tools/networking/openvpn/update-resolv-conf.nix { }; @@ -8501,9 +8523,7 @@ with pkgs; phosh = callPackage ../applications/window-managers/phosh { }; - pinentry = libsForQt5.callPackage ../tools/security/pinentry { - libcap = if stdenv.isDarwin then null else libcap; - }; + pinentry = libsForQt5.callPackage ../tools/security/pinentry { }; pinentry-curses = (lib.getOutput "curses" pinentry); pinentry-emacs = (lib.getOutput "emacs" pinentry); @@ -9428,7 +9448,7 @@ with pkgs; slides = callPackage ../applications/misc/slides { }; - slirp4netns = callPackage ../tools/networking/slirp4netns/default.nix { }; + slirp4netns = callPackage ../tools/networking/slirp4netns { }; slsnif = callPackage ../tools/misc/slsnif { }; @@ -9457,13 +9477,17 @@ with pkgs; smu = callPackage ../tools/text/smu { }; + smpq = callPackage ../applications/misc/smpq { }; + sn0int = callPackage ../tools/security/sn0int { }; snabb = callPackage ../tools/networking/snabb { }; snallygaster = callPackage ../tools/security/snallygaster { }; - snapcast = callPackage ../applications/audio/snapcast { }; + snapcast = callPackage ../applications/audio/snapcast { + pulseaudioSupport = config.pulseaudio or stdenv.isLinux; + }; snapdragon-profiler = callPackage ../tools/graphics/snapdragon-profiler { }; @@ -9560,6 +9584,8 @@ with pkgs; syntex = callPackage ../tools/graphics/syntex {}; + synapse-admin = callPackage ../tools/admin/synapse-admin {}; + sl = callPackage ../tools/misc/sl { stdenv = gccStdenv; }; socat = callPackage ../tools/networking/socat { }; @@ -9585,7 +9611,7 @@ with pkgs; speech-denoiser = callPackage ../applications/audio/speech-denoiser {}; - splot = haskell.lib.justStaticExecutables haskellPackages.splot; + splot = haskell.lib.compose.justStaticExecutables haskellPackages.splot; spotdl = callPackage ../tools/audio/spotdl { }; @@ -9699,13 +9725,13 @@ with pkgs; stuntman = callPackage ../tools/networking/stuntman { }; - stutter = haskell.lib.justStaticExecutables haskellPackages.stutter; + stutter = haskell.lib.compose.justStaticExecutables haskellPackages.stutter; strongswan = callPackage ../tools/networking/strongswan { }; strongswanTNC = strongswan.override { enableTNC = true; }; strongswanNM = strongswan.override { enableNetworkManager = true; }; - stylish-haskell = haskell.lib.justStaticExecutables haskellPackages.stylish-haskell; + stylish-haskell = haskell.lib.compose.justStaticExecutables haskellPackages.stylish-haskell; su = shadow.su; @@ -9725,7 +9751,7 @@ with pkgs; swagger-codegen3 = callPackage ../tools/networking/swagger-codegen3 { }; - swapview = callPackage ../os-specific/linux/swapview/default.nix { }; + swapview = callPackage ../os-specific/linux/swapview { }; swtpm = callPackage ../tools/security/swtpm { }; @@ -9860,7 +9886,7 @@ with pkgs; telescope = callPackage ../applications/networking/browsers/telescope { }; termscp = callPackage ../tools/networking/termscp { - inherit (darwin.apple_sdk.frameworks) Security; + inherit (darwin.apple_sdk.frameworks) Foundation Security; }; termius = callPackage ../applications/networking/termius { }; @@ -10261,6 +10287,8 @@ with pkgs; v2ray = callPackage ../tools/networking/v2ray { }; + v2ray-domain-list-community = callPackage ../data/misc/v2ray-domain-list-community { }; + vacuum = callPackage ../applications/networking/instant-messengers/vacuum {}; vampire = callPackage ../applications/science/logic/vampire {}; @@ -10484,7 +10512,7 @@ with pkgs; wsmancli = callPackage ../tools/system/wsmancli {}; - wstunnel = haskell.lib.justStaticExecutables haskellPackages.wstunnel; + wstunnel = haskell.lib.compose.justStaticExecutables haskellPackages.wstunnel; wolfebin = callPackage ../tools/networking/wolfebin { python = python2; @@ -10533,7 +10561,7 @@ with pkgs; time = callPackage ../tools/misc/time { }; - tweet-hs = haskell.lib.justStaticExecutables haskellPackages.tweet-hs; + tweet-hs = haskell.lib.compose.justStaticExecutables haskellPackages.tweet-hs; tweeny = callPackage ../development/libraries/tweeny { }; @@ -10614,6 +10642,8 @@ with pkgs; unrar = callPackage ../tools/archivers/unrar { }; + unrar-wrapper = python3Packages.callPackage ../tools/archivers/unrar-wrapper { }; + vul = callPackage ../applications/misc/vul { }; xar = callPackage ../tools/compression/xar { }; @@ -10662,7 +10692,10 @@ with pkgs; inherit (chickenPackages_4) eggDerivation fetchegg; }; - unar = callPackage ../tools/archivers/unar { stdenv = clangStdenv; }; + unar = callPackage ../tools/archivers/unar { + inherit (darwin.apple_sdk.frameworks) Foundation AppKit; + stdenv = clangStdenv; + }; unp = callPackage ../tools/archivers/unp { }; @@ -11163,8 +11196,8 @@ with pkgs; jdk = jdk8; # TODO: remove override https://github.com/NixOS/nixpkgs/pull/89731 }; - adoptopenjdk-bin-16-packages-linux = import ../development/compilers/adoptopenjdk-bin/jdk16-linux.nix; - adoptopenjdk-bin-16-packages-darwin = import ../development/compilers/adoptopenjdk-bin/jdk16-darwin.nix; + adoptopenjdk-bin-16-packages-linux = import ../development/compilers/adoptopenjdk-bin/jdk16-linux.nix { inherit lib; }; + adoptopenjdk-bin-16-packages-darwin = import ../development/compilers/adoptopenjdk-bin/jdk16-darwin.nix { inherit lib; }; adoptopenjdk-hotspot-bin-16 = if stdenv.isLinux then callPackage adoptopenjdk-bin-16-packages-linux.jdk-hotspot {} @@ -11181,8 +11214,8 @@ with pkgs; then callPackage adoptopenjdk-bin-16-packages-linux.jre-openj9 {} else callPackage adoptopenjdk-bin-16-packages-darwin.jre-openj9 {}; - adoptopenjdk-bin-15-packages-linux = import ../development/compilers/adoptopenjdk-bin/jdk15-linux.nix; - adoptopenjdk-bin-15-packages-darwin = import ../development/compilers/adoptopenjdk-bin/jdk15-darwin.nix; + adoptopenjdk-bin-15-packages-linux = import ../development/compilers/adoptopenjdk-bin/jdk15-linux.nix { inherit lib; }; + adoptopenjdk-bin-15-packages-darwin = import ../development/compilers/adoptopenjdk-bin/jdk15-darwin.nix { inherit lib; }; adoptopenjdk-hotspot-bin-15 = if stdenv.isLinux then callPackage adoptopenjdk-bin-15-packages-linux.jdk-hotspot {} @@ -11199,8 +11232,8 @@ with pkgs; then callPackage adoptopenjdk-bin-15-packages-linux.jre-openj9 {} else callPackage adoptopenjdk-bin-15-packages-darwin.jre-openj9 {}; - adoptopenjdk-bin-14-packages-linux = import ../development/compilers/adoptopenjdk-bin/jdk14-linux.nix; - adoptopenjdk-bin-14-packages-darwin = import ../development/compilers/adoptopenjdk-bin/jdk14-darwin.nix; + adoptopenjdk-bin-14-packages-linux = import ../development/compilers/adoptopenjdk-bin/jdk14-linux.nix { inherit lib; }; + adoptopenjdk-bin-14-packages-darwin = import ../development/compilers/adoptopenjdk-bin/jdk14-darwin.nix { inherit lib; }; adoptopenjdk-hotspot-bin-14 = if stdenv.isLinux then callPackage adoptopenjdk-bin-14-packages-linux.jdk-hotspot {} @@ -11217,8 +11250,8 @@ with pkgs; then callPackage adoptopenjdk-bin-14-packages-linux.jre-openj9 {} else callPackage adoptopenjdk-bin-14-packages-darwin.jre-openj9 {}; - adoptopenjdk-bin-13-packages-linux = import ../development/compilers/adoptopenjdk-bin/jdk13-linux.nix; - adoptopenjdk-bin-13-packages-darwin = import ../development/compilers/adoptopenjdk-bin/jdk13-darwin.nix; + adoptopenjdk-bin-13-packages-linux = import ../development/compilers/adoptopenjdk-bin/jdk13-linux.nix { inherit lib; }; + adoptopenjdk-bin-13-packages-darwin = import ../development/compilers/adoptopenjdk-bin/jdk13-darwin.nix { inherit lib; }; adoptopenjdk-hotspot-bin-13 = if stdenv.isLinux then callPackage adoptopenjdk-bin-13-packages-linux.jdk-hotspot {} @@ -11235,8 +11268,8 @@ with pkgs; then callPackage adoptopenjdk-bin-13-packages-linux.jre-openj9 {} else callPackage adoptopenjdk-bin-13-packages-darwin.jre-openj9 {}; - adoptopenjdk-bin-11-packages-linux = import ../development/compilers/adoptopenjdk-bin/jdk11-linux.nix; - adoptopenjdk-bin-11-packages-darwin = import ../development/compilers/adoptopenjdk-bin/jdk11-darwin.nix; + adoptopenjdk-bin-11-packages-linux = import ../development/compilers/adoptopenjdk-bin/jdk11-linux.nix { inherit lib; }; + adoptopenjdk-bin-11-packages-darwin = import ../development/compilers/adoptopenjdk-bin/jdk11-darwin.nix { inherit lib; }; adoptopenjdk-hotspot-bin-11 = if stdenv.isLinux then callPackage adoptopenjdk-bin-11-packages-linux.jdk-hotspot {} @@ -11253,8 +11286,8 @@ with pkgs; then callPackage adoptopenjdk-bin-11-packages-linux.jre-openj9 {} else callPackage adoptopenjdk-bin-11-packages-darwin.jre-openj9 {}; - adoptopenjdk-bin-8-packages-linux = import ../development/compilers/adoptopenjdk-bin/jdk8-linux.nix; - adoptopenjdk-bin-8-packages-darwin = import ../development/compilers/adoptopenjdk-bin/jdk8-darwin.nix; + adoptopenjdk-bin-8-packages-linux = import ../development/compilers/adoptopenjdk-bin/jdk8-linux.nix { inherit lib; }; + adoptopenjdk-bin-8-packages-darwin = import ../development/compilers/adoptopenjdk-bin/jdk8-darwin.nix { inherit lib; }; adoptopenjdk-hotspot-bin-8 = if stdenv.isLinux then callPackage adoptopenjdk-bin-8-packages-linux.jdk-hotspot {} @@ -11448,7 +11481,7 @@ with pkgs; scry = callPackage ../development/tools/scry { }; - dasm = callPackage ../development/compilers/dasm/default.nix { }; + dasm = callPackage ../development/compilers/dasm { }; dbmate = callPackage ../development/tools/database/dbmate { }; @@ -11467,7 +11500,7 @@ with pkgs; eql = callPackage ../development/compilers/eql {}; - elm2nix = haskell.lib.justStaticExecutables haskellPackages.elm2nix; + elm2nix = haskell.lib.compose.justStaticExecutables haskellPackages.elm2nix; elmPackages = recurseIntoAttrs (callPackage ../development/compilers/elm { inherit (darwin.apple_sdk.frameworks) Security; @@ -11716,8 +11749,6 @@ with pkgs; reproducibleBuild = true; profiledCompiler = false; - enableLTO = !stdenv.isi686; - libcCross = if stdenv.targetPlatform != stdenv.buildPlatform then libcCross else null; threadsCross = if stdenv.targetPlatform != stdenv.buildPlatform then threadsCross else null; @@ -11730,8 +11761,6 @@ with pkgs; reproducibleBuild = true; profiledCompiler = false; - enableLTO = !stdenv.isi686; - libcCross = if stdenv.targetPlatform != stdenv.buildPlatform then libcCross else null; threadsCross = if stdenv.targetPlatform != stdenv.buildPlatform then threadsCross else null; @@ -11744,8 +11773,6 @@ with pkgs; reproducibleBuild = true; profiledCompiler = false; - enableLTO = !stdenv.isi686; - libcCross = if stdenv.targetPlatform != stdenv.buildPlatform then libcCross else null; threadsCross = if stdenv.targetPlatform != stdenv.buildPlatform then threadsCross else null; @@ -11974,14 +12001,14 @@ with pkgs; inherit (haskellPackages) ghc; - cabal-install = haskell.lib.justStaticExecutables haskellPackages.cabal-install; + cabal-install = haskell.lib.compose.justStaticExecutables haskellPackages.cabal-install; - stack = haskell.lib.justStaticExecutables haskellPackages.stack; - hlint = haskell.lib.justStaticExecutables haskellPackages.hlint; + stack = haskell.lib.compose.justStaticExecutables haskellPackages.stack; + hlint = haskell.lib.compose.justStaticExecutables haskellPackages.hlint; - krank = haskell.lib.justStaticExecutables haskellPackages.krank; + krank = haskell.lib.compose.justStaticExecutables haskellPackages.krank; - stylish-cabal = haskell.lib.justStaticExecutables haskellPackages.stylish-cabal; + stylish-cabal = haskell.lib.compose.justStaticExecutables haskellPackages.stylish-cabal; all-cabal-hashes = callPackage ../data/misc/hackage { }; @@ -12289,7 +12316,7 @@ with pkgs; javacard-devkit = pkgsi686Linux.callPackage ../development/compilers/javacard-devkit { }; - juniper = callPackage ../development/compilers/juniper/default.nix { }; + juniper = callPackage ../development/compilers/juniper { }; julia_10 = callPackage ../development/compilers/julia/1.0.nix { gmp = gmp6; @@ -12303,14 +12330,14 @@ with pkgs; julia-lts = julia_10; julia-stable = julia_15; - julia = julia-lts; + julia = julia-stable; julia_10-bin = callPackage ../development/compilers/julia/1.0-bin.nix { }; julia_16-bin = callPackage ../development/compilers/julia/1.6-bin.nix { }; julia-lts-bin = julia_10-bin; julia-stable-bin = julia_16-bin; - julia-bin = julia-lts-bin; + julia-bin = julia-stable-bin; jwasm = callPackage ../development/compilers/jwasm { }; @@ -12336,7 +12363,7 @@ with pkgs; knightos-z80e = callPackage ../development/tools/knightos/z80e { }; - koka = haskell.lib.justStaticExecutables (haskellPackages.callPackage ../development/compilers/koka { }); + koka = haskell.lib.compose.justStaticExecutables (haskellPackages.callPackage ../development/compilers/koka { }); kotlin = callPackage ../development/compilers/kotlin { }; kotlin-native = callPackage ../development/compilers/kotlin/native.nix { }; @@ -12803,7 +12830,9 @@ with pkgs; cargo-make = callPackage ../development/tools/rust/cargo-make { inherit (darwin.apple_sdk.frameworks) Security SystemConfiguration; }; - cargo-modules = callPackage ../development/tools/rust/cargo-modules { }; + cargo-modules = callPackage ../development/tools/rust/cargo-modules { + inherit (darwin.apple_sdk.frameworks) CoreFoundation CoreServices; + }; cargo-msrv = callPackage ../development/tools/rust/cargo-msrv { inherit (darwin.apple_sdk.frameworks) Security; }; @@ -12813,7 +12842,9 @@ with pkgs; }; cargo-readme = callPackage ../development/tools/rust/cargo-readme {}; cargo-sort = callPackage ../development/tools/rust/cargo-sort { }; - cargo-spellcheck = callPackage ../development/tools/rust/cargo-spellcheck { }; + cargo-spellcheck = callPackage ../development/tools/rust/cargo-spellcheck { + inherit (darwin.apple_sdk.frameworks) Security; + }; cargo-supply-chain = callPackage ../development/tools/rust/cargo-supply-chain { inherit (darwin.apple_sdk.frameworks) Security; }; @@ -12888,7 +12919,7 @@ with pkgs; sbcl_2_1_9 = callPackage ../development/compilers/sbcl/2.1.9.nix {}; sbcl = sbcl_2_1_9; - roswell = callPackage ../development/tools/roswell/default.nix { }; + roswell = callPackage ../development/tools/roswell { }; scala_2_10 = callPackage ../development/compilers/scala/2.x.nix { majorVersion = "2.10"; jre = jdk8; }; scala_2_11 = callPackage ../development/compilers/scala/2.x.nix { majorVersion = "2.11"; jre = jdk8; }; @@ -12896,7 +12927,7 @@ with pkgs; scala_2_13 = callPackage ../development/compilers/scala/2.x.nix { majorVersion = "2.13"; jre = jdk8; }; scala = scala_2_13; - scala-runners = callPackage ../development/compilers/scala-runners/default.nix { + scala-runners = callPackage ../development/compilers/scala-runners { coursier = coursier.override { jre = jdk8; }; }; @@ -13159,6 +13190,8 @@ with pkgs; clips = callPackage ../development/interpreters/clips { }; + cliscord = callPackage ../misc/cliscord { }; + clisp = callPackage ../development/interpreters/clisp { }; clisp-tip = callPackage ../development/interpreters/clisp/hg.nix { }; @@ -13175,19 +13208,19 @@ with pkgs; clooj = callPackage ../development/interpreters/clojure/clooj.nix { }; - dhall = haskell.lib.justStaticExecutables haskellPackages.dhall; + dhall = haskell.lib.compose.justStaticExecutables haskellPackages.dhall; - dhall-bash = haskell.lib.justStaticExecutables haskellPackages.dhall-bash; + dhall-bash = haskell.lib.compose.justStaticExecutables haskellPackages.dhall-bash; - dhall-docs = haskell.lib.justStaticExecutables haskellPackages.dhall-docs; + dhall-docs = haskell.lib.compose.justStaticExecutables haskellPackages.dhall-docs; - dhall-lsp-server = haskell.lib.justStaticExecutables haskellPackages.dhall-lsp-server; + dhall-lsp-server = haskell.lib.compose.justStaticExecutables haskellPackages.dhall-lsp-server; - dhall-json = haskell.lib.justStaticExecutables haskellPackages.dhall-json; + dhall-json = haskell.lib.compose.justStaticExecutables haskellPackages.dhall-json; - dhall-nix = haskell.lib.justStaticExecutables haskellPackages.dhall-nix; + dhall-nix = haskell.lib.compose.justStaticExecutables haskellPackages.dhall-nix; - dhall-text = haskell.lib.justStaticExecutables haskellPackages.dhall-text; + dhall-text = haskell.lib.compose.justStaticExecutables haskellPackages.dhall-text; dhallPackages = recurseIntoAttrs (callPackage ./dhall-packages.nix { }); @@ -13320,6 +13353,13 @@ with pkgs; ### END OF LUA + ### CuboCore + CuboCore = recurseIntoAttrs (import ./cubocore-packages.nix { + inherit newScope lxqt lib libsForQt5; + }); + + ### End of CuboCore + lush2 = callPackage ../development/interpreters/lush {}; maude = callPackage ../development/interpreters/maude { @@ -13488,7 +13528,7 @@ with pkgs; setupcfg2nix = python3Packages.callPackage ../development/tools/setupcfg2nix {}; # These pyside tools do not provide any Python modules and are meant to be here. - # See ../development/python-modules/pyside/default.nix for details. + # See ../development/python-modules/pyside for details. pysideApiextractor = callPackage ../development/python-modules/pyside/apiextractor.nix { }; pysideGeneratorrunner = callPackage ../development/python-modules/pyside/generatorrunner.nix { }; @@ -13603,6 +13643,7 @@ with pkgs; spidermonkey_68 = callPackage ../development/interpreters/spidermonkey/68.nix { }; spidermonkey_78 = callPackage ../development/interpreters/spidermonkey/78.nix { }; + spidermonkey_91 = callPackage ../development/interpreters/spidermonkey/91.nix { }; ssm-agent = callPackage ../applications/networking/cluster/ssm-agent { }; ssm-session-manager-plugin = callPackage ../applications/networking/cluster/ssm-session-manager-plugin { }; @@ -13728,7 +13769,7 @@ with pkgs; or1k-newlib = callPackage ../development/misc/or1k/newlib.nix {}; - rappel = callPackage ../development/misc/rappel/default.nix { }; + rappel = callPackage ../development/misc/rappel { }; pharo-vms = callPackage ../development/pharo/vm { }; pharo = pharo-vms.multi-vm-wrapper; @@ -14427,7 +14468,7 @@ with pkgs; flootty = callPackage ../development/tools/flootty { }; - fffuu = haskell.lib.justStaticExecutables (haskellPackages.callPackage ../tools/misc/fffuu { }); + fffuu = haskell.lib.compose.justStaticExecutables (haskellPackages.callPackage ../tools/misc/fffuu { }); ffuf = callPackage ../tools/security/ffuf { }; @@ -14443,6 +14484,8 @@ with pkgs; fprettify = callPackage ../development/tools/fprettify { }; + fortran-language-server = python3.pkgs.callPackage ../development/tools/fortran-language-server { }; + framac = callPackage ../development/tools/analysis/frama-c { }; frame = callPackage ../development/libraries/frame { }; @@ -14519,9 +14562,9 @@ with pkgs; gnome-usage = callPackage ../applications/misc/gnome-usage {}; - gnome-inform7 = callPackage ../applications/editors/gnome-inform7/default.nix { }; + gnome-inform7 = callPackage ../applications/editors/gnome-inform7 { }; - gnome-latex = callPackage ../applications/editors/gnome-latex/default.nix { }; + gnome-latex = callPackage ../applications/editors/gnome-latex { }; gnome-network-displays = callPackage ../applications/networking/gnome-network-displays { }; @@ -14564,8 +14607,8 @@ with pkgs; gradle_4_10 = res.gradleGen.gradle_4_10; gradle_4 = gradle_4_10; gradle_5 = res.gradleGen.gradle_5_6; - gradle_6 = res.gradleGen.gradle_6_8; - gradle_7 = res.gradleGen.gradle_7; + gradle_6 = res.gradleGen.gradle_6_9; + gradle_7 = res.gradleGen.gradle_7_3; gperf = callPackage ../development/tools/misc/gperf { }; # 3.1 changed some parameters from int to size_t, leading to mismatches. @@ -14595,7 +14638,7 @@ with pkgs; guile = guile_2_0; }; - hadolint = haskell.lib.justStaticExecutables haskellPackages.hadolint; + hadolint = haskell.lib.compose.justStaticExecutables haskellPackages.hadolint; halfempty = callPackage ../development/tools/halfempty {}; @@ -14804,8 +14847,6 @@ with pkgs; minizinc = callPackage ../development/tools/minizinc { }; minizincide = qt514.callPackage ../development/tools/minizinc/ide.nix { }; - mk = callPackage ../development/tools/build-managers/mk { }; - mkcert = callPackage ../development/tools/misc/mkcert { }; mkdocs = callPackage ../development/tools/documentation/mkdocs { }; @@ -14826,8 +14867,8 @@ with pkgs; msitools = callPackage ../development/tools/misc/msitools { }; - haskell-ci = haskell.lib.justStaticExecutables haskellPackages.haskell-ci; - haskell-ci-unstable = lowPrio (haskell.lib.justStaticExecutables haskellPackages.haskell-ci-unstable); + haskell-ci = haskell.lib.compose.justStaticExecutables haskellPackages.haskell-ci; + haskell-ci-unstable = lowPrio (haskell.lib.compose.justStaticExecutables haskellPackages.haskell-ci-unstable); neoload = callPackage ../development/tools/neoload { licenseAccepted = (config.neoload.accept_license or false); @@ -15101,6 +15142,8 @@ with pkgs; sbt-extras = callPackage ../development/tools/build-managers/sbt-extras { }; + scala-cli = callPackage ../development/tools/build-managers/scala-cli {}; + scc = callPackage ../development/tools/misc/scc { }; scss-lint = callPackage ../development/tools/scss-lint { }; @@ -15115,7 +15158,7 @@ with pkgs; inherit (darwin.apple_sdk.frameworks) Security; }; - shake = haskell.lib.justStaticExecutables haskellPackages.shake; + shake = haskell.lib.compose.justStaticExecutables haskellPackages.shake; shallot = callPackage ../tools/misc/shallot { }; @@ -15313,7 +15356,9 @@ with pkgs; ttyd = callPackage ../servers/ttyd { }; - turbogit = callPackage ../development/tools/turbogit { }; + turbogit = callPackage ../development/tools/turbogit { + libgit2 = libgit2_1_1; # git2go only supports v1.1.x + }; tweak = callPackage ../applications/editors/tweak { }; @@ -15531,7 +15576,7 @@ with pkgs; assimp = callPackage ../development/libraries/assimp { }; asio_1_10 = callPackage ../development/libraries/asio/1.10.nix { }; - asio = callPackage ../development/libraries/asio/default.nix { }; + asio = callPackage ../development/libraries/asio { }; aspell = callPackage ../development/libraries/aspell { }; @@ -15691,7 +15736,7 @@ with pkgs; c-blosc = callPackage ../development/libraries/c-blosc { }; # justStaticExecutables is needed due to https://github.com/NixOS/nix/issues/2990 - cachix = haskell.lib.justStaticExecutables haskellPackages.cachix; + cachix = haskell.lib.compose.justStaticExecutables haskellPackages.cachix; hercules-ci-agent = callPackage ../development/tools/continuous-integration/hercules-ci-agent { }; @@ -15699,7 +15744,7 @@ with pkgs; isa-l = callPackage ../development/libraries/isa-l { }; - niv = lib.getBin (haskell.lib.justStaticExecutables haskellPackages.niv); + niv = lib.getBin (haskell.lib.compose.justStaticExecutables haskellPackages.niv); ormolu = haskellPackages.ormolu.bin; @@ -15711,6 +15756,8 @@ with pkgs; ndn-cxx = callPackage ../development/libraries/ndn-cxx { }; + ndn-tools = callPackage ../tools/networking/ndn-tools { }; + cddlib = callPackage ../development/libraries/cddlib {}; cdk = callPackage ../development/libraries/cdk {}; @@ -15815,6 +15862,8 @@ with pkgs; cointop = callPackage ../applications/misc/cointop { }; + collada-dom = callPackage ../development/libraries/collada-dom { }; + cog = callPackage ../development/web/cog { }; cosmopolitan = callPackage ../development/libraries/cosmopolitan { }; @@ -15859,6 +15908,8 @@ with pkgs; cryptominisat = callPackage ../applications/science/logic/cryptominisat { }; + csdr = callPackage ../applications/radio/csdr { }; + ctypes_sh = callPackage ../development/libraries/ctypes_sh { }; curlcpp = callPackage ../development/libraries/curlcpp { }; @@ -16047,9 +16098,6 @@ with pkgs; linbox = callPackage ../development/libraries/linbox { }; - ffmpeg_2_8 = callPackage ../development/libraries/ffmpeg/2.8.nix { - inherit (darwin.apple_sdk.frameworks) Cocoa; - }; ffmpeg_3_4 = callPackage ../development/libraries/ffmpeg/3.4.nix { inherit (darwin.apple_sdk.frameworks) Cocoa CoreMedia; }; @@ -16058,7 +16106,6 @@ with pkgs; }; # Aliases - ffmpeg_2 = ffmpeg_2_8; ffmpeg_3 = ffmpeg_3_4; # Please make sure this is updated to the latest version on the next major # update to ffmpeg @@ -16306,6 +16353,16 @@ with pkgs; ]; }); + libgit2_1_1 = libgit2.overrideAttrs (oldAttrs: rec { + version = "1.1.1"; + src = fetchFromGitHub { + owner = "libgit2"; + repo = "libgit2"; + rev = "v${version}"; + sha256 = "sha256-SxceIxT0aeiiiZCeSIe6EOa+MyVpQVaiv/ZZn6fkwIc="; + }; + }); + libgit2-glib = callPackage ../development/libraries/libgit2-glib { }; libhsts = callPackage ../development/libraries/libhsts { }; @@ -16338,6 +16395,8 @@ with pkgs; stdenv = gccStdenv; # doesn't compile without gcc }; + mtrace = callPackage ../development/libraries/glibc/mtrace.nix { }; + # Provided by libc on Operating Systems that use the Extensible Linker Format. elf-header = if stdenv.hostPlatform.parsed.kernel.execFormat.name == "elf" @@ -16526,7 +16585,7 @@ with pkgs; then callPackage ../development/libraries/gnu-efi { } else null; - gnutls = callPackage ../development/libraries/gnutls/default.nix { + gnutls = callPackage ../development/libraries/gnutls { inherit (darwin.apple_sdk.frameworks) Security; util-linux = util-linuxMinimal; # break the cyclic dependency autoconf = buildPackages.autoconf269; @@ -16590,7 +16649,7 @@ with pkgs; glib-testing = callPackage ../development/libraries/glib-testing { }; - glirc = haskell.lib.justStaticExecutables haskellPackages.glirc; + glirc = haskell.lib.compose.justStaticExecutables haskellPackages.glirc; gom = callPackage ../development/libraries/gom { }; @@ -16981,7 +17040,7 @@ with pkgs; json2hcl = callPackage ../development/tools/json2hcl { }; - json2yaml = haskell.lib.justStaticExecutables haskellPackages.json2yaml; + json2yaml = haskell.lib.compose.justStaticExecutables haskellPackages.json2yaml; json-glib = callPackage ../development/libraries/json-glib { }; @@ -17837,8 +17896,6 @@ with pkgs; libkeyfinder = callPackage ../development/libraries/audio/libkeyfinder { }; - libkml = callPackage ../development/libraries/libkml { }; - libks = callPackage ../development/libraries/libks { }; libksba = callPackage ../development/libraries/libksba { }; @@ -18439,7 +18496,7 @@ with pkgs; matio = callPackage ../development/libraries/matio { }; - matterhorn = haskell.lib.justStaticExecutables haskellPackages.matterhorn; + matterhorn = haskell.lib.compose.justStaticExecutables haskellPackages.matterhorn; maxflow = callPackage ../development/libraries/maxflow { }; @@ -18644,7 +18701,7 @@ with pkgs; nghttp2 = callPackage ../development/libraries/nghttp2 { }; libnghttp2 = nghttp2.lib; - nix-plugins = callPackage ../development/libraries/nix-plugins {}; + nix-plugins = callPackage ../development/libraries/nix-plugins { nix = nix_2_3; }; nika-fonts = callPackage ../data/fonts/nika-fonts { }; @@ -18854,7 +18911,8 @@ with pkgs; inherit (callPackages ../development/libraries/openssl { }) openssl_1_0_2 - openssl_1_1; + openssl_1_1 + openssl_3_0; openssl-chacha = callPackage ../development/libraries/openssl/chacha.nix { }; @@ -18870,6 +18928,11 @@ with pkgs; openrct2 = callPackage ../games/openrct2 { }; + openwebrx = callPackage ../applications/radio/openwebrx { + inherit (python3Packages) + buildPythonPackage buildPythonApplication setuptools; + }; + optparse-bash = callPackage ../development/libraries/optparse-bash { }; orcania = callPackage ../development/libraries/orcania { }; @@ -18925,7 +18988,7 @@ with pkgs; pkgdiff = callPackage ../tools/misc/pkgdiff { }; - place-cursor-at = haskell.lib.justStaticExecutables haskellPackages.place-cursor-at; + place-cursor-at = haskell.lib.compose.justStaticExecutables haskellPackages.place-cursor-at; plib = callPackage ../development/libraries/plib { }; @@ -18974,6 +19037,8 @@ with pkgs; presage = callPackage ../development/libraries/presage { }; + present = callPackage ../misc/present { }; + prime-server = callPackage ../development/libraries/prime-server { }; primesieve = callPackage ../development/libraries/science/math/primesieve { }; @@ -19196,12 +19261,14 @@ with pkgs; readosm = callPackage ../development/libraries/readosm { }; + recastnavigation = callPackage ../development/libraries/recastnavigation { }; + rinutils = callPackage ../development/libraries/rinutils { }; kissfft = callPackage ../development/libraries/kissfft { }; lambdabot = callPackage ../development/tools/haskell/lambdabot { - haskellLib = haskell.lib; + haskellLib = haskell.lib.compose; }; lambda-mod-zsh-theme = callPackage ../shells/zsh/lambda-mod-zsh-theme { }; @@ -19551,8 +19618,12 @@ with pkgs; srtp = callPackage ../development/libraries/srtp { }; + stargate-libcds = callPackage ../development/libraries/stargate-libcds { }; + stb = callPackage ../development/libraries/stb { }; + StormLib = callPackage ../development/libraries/StormLib { }; + stxxl = callPackage ../development/libraries/stxxl { parallel = true; }; sqlite = lowPrio (callPackage ../development/libraries/sqlite { }); @@ -19574,13 +19645,13 @@ with pkgs; sqlite-replication = sqlite.overrideAttrs (oldAttrs: rec { name = "sqlite-${version}"; version = "3.27.2+replication3"; - src = pkgs.fetchFromGitHub { + src = fetchFromGitHub { owner = "CanonicalLtd"; repo = "sqlite"; rev = "version-${version}"; sha256 = "1aw1naa5y25ial251f74h039pgcz92p4b3994jvfzqpjlz06qwvw"; }; - nativeBuildInputs = [ pkgs.tcl ]; + nativeBuildInputs = [ tcl ]; configureFlags = oldAttrs.configureFlags ++ [ "--enable-replication" "--disable-amalgamation" @@ -20105,7 +20176,7 @@ with pkgs; cppzmq = callPackage ../development/libraries/cppzmq {}; - czmq = callPackage ../development/libraries/czmq/default.nix {}; + czmq = callPackage ../development/libraries/czmq {}; zmqpp = callPackage ../development/libraries/zmqpp { }; @@ -20191,9 +20262,7 @@ with pkgs; lucene = callPackage ../development/libraries/java/lucene { }; - lucenepp = callPackage ../development/libraries/lucene++ { - boost = boost155; - }; + lucenepp = callPackage ../development/libraries/lucene++ { }; mockobjects = callPackage ../development/libraries/java/mockobjects { }; @@ -20230,14 +20299,13 @@ with pkgs; go = buildPackages.go_1_16; }; # go_1_17 has go module changes which may not be portable - # across different go versions and/or platforms, - # it also requires >=10.13 stdenv on darwin which - # is not currently available for x86_64-darwin + # across different go versions and/or platforms: + # https://github.com/NixOS/nixpkgs/issues/144667 # - # do not uncomment this without approval from the go CODEOWNERS - #buildGo117Package = callPackage ../development/go-packages/generic { - # go = buildPackages.go_1_17; - #}; + # That's why `buildGoPackage != buildGo117Package`. + buildGo117Package = callPackage ../development/go-packages/generic { + go = buildPackages.go_1_17; + }; buildGoPackage = buildGo116Package; @@ -20248,14 +20316,13 @@ with pkgs; go = buildPackages.go_1_16; }; # go_1_17 has go module changes which may not be portable - # across different go versions and/or platforms, - # it also requires >=10.13 stdenv on darwin which - # is not currently available for x86_64-darwin + # across different go versions and/or platforms: + # https://github.com/NixOS/nixpkgs/issues/144667 # - # do not uncomment this without approval from the go CODEOWNERS - #buildGo117Module = callPackage ../development/go-modules/generic { - # go = buildPackages.go_1_17; - #}; + # That's why `buildGoModule != buildGo117Module`. + buildGo117Module = callPackage ../development/go-modules/generic { + go = buildPackages.go_1_17; + }; buildGoModule = buildGo116Module; @@ -20378,7 +20445,7 @@ with pkgs; alerta-server = callPackage ../servers/monitoring/alerta { }; apacheHttpd_2_4 = callPackage ../servers/http/apache-httpd/2.4.nix { }; - apacheHttpd = pkgs.apacheHttpd_2_4; + apacheHttpd = apacheHttpd_2_4; apacheHttpdPackagesFor = apacheHttpd: self: let callPackage = newScope self; in { inherit apacheHttpd; @@ -20416,7 +20483,7 @@ with pkgs; subversion = pkgs.subversion.override { httpServer = true; inherit apacheHttpd; }; }; - apacheHttpdPackages_2_4 = recurseIntoAttrs (apacheHttpdPackagesFor pkgs.apacheHttpd_2_4 pkgs.apacheHttpdPackages_2_4); + apacheHttpdPackages_2_4 = recurseIntoAttrs (apacheHttpdPackagesFor apacheHttpd_2_4 apacheHttpdPackages_2_4); apacheHttpdPackages = apacheHttpdPackages_2_4; appdaemon = callPackage ../servers/home-assistant/appdaemon.nix { }; @@ -20573,6 +20640,10 @@ with pkgs; fcgiwrap = callPackage ../servers/fcgiwrap { }; + fedigroups = callPackage ../servers/fedigroups { + inherit (darwin.apple_sdk.frameworks) Security; + }; + felix = callPackage ../servers/felix { }; felix_remoteshell = callPackage ../servers/felix/remoteshell.nix { }; @@ -20626,7 +20697,7 @@ with pkgs; hashi-ui = callPackage ../servers/hashi-ui {}; - hasura-graphql-engine = haskell.lib.justStaticExecutables haskellPackages.graphql-engine; + hasura-graphql-engine = haskell.lib.compose.justStaticExecutables haskellPackages.graphql-engine; hasura-cli = callPackage ../servers/hasura/cli.nix { }; @@ -20760,18 +20831,18 @@ with pkgs; mkchromecast = libsForQt5.callPackage ../applications/networking/mkchromecast { }; # Backwards compatibility. - mod_dnssd = pkgs.apacheHttpdPackages.mod_dnssd; - mod_fastcgi = pkgs.apacheHttpdPackages.mod_fastcgi; - mod_python = pkgs.apacheHttpdPackages.mod_python; - mod_wsgi = pkgs.apacheHttpdPackages.mod_wsgi; - mod_ca = pkgs.apacheHttpdPackages.mod_ca; - mod_crl = pkgs.apacheHttpdPackages.mod_crl; - mod_csr = pkgs.apacheHttpdPackages.mod_csr; - mod_ocsp = pkgs.apacheHttpdPackages.mod_ocsp; - mod_scep = pkgs.apacheHttpdPackages.mod_scep; - mod_spkac = pkgs.apacheHttpdPackages.mod_spkac; - mod_pkcs12 = pkgs.apacheHttpdPackages.mod_pkcs12; - mod_timestamp = pkgs.apacheHttpdPackages.mod_timestamp; + mod_dnssd = apacheHttpdPackages.mod_dnssd; + mod_fastcgi = apacheHttpdPackages.mod_fastcgi; + mod_python = apacheHttpdPackages.mod_python; + mod_wsgi = apacheHttpdPackages.mod_wsgi; + mod_ca = apacheHttpdPackages.mod_ca; + mod_crl = apacheHttpdPackages.mod_crl; + mod_csr = apacheHttpdPackages.mod_csr; + mod_ocsp = apacheHttpdPackages.mod_ocsp; + mod_scep = apacheHttpdPackages.mod_scep; + mod_spkac = apacheHttpdPackages.mod_spkac; + mod_pkcs12 = apacheHttpdPackages.mod_pkcs12; + mod_timestamp = apacheHttpdPackages.mod_timestamp; inherit (callPackages ../servers/mpd { stdenv = if stdenv.cc.isClang then llvmPackages_8.stdenv else stdenv; @@ -21175,7 +21246,8 @@ with pkgs; postgresqlPackages = recurseIntoAttrs postgresql.pkgs; postgresql11Packages = recurseIntoAttrs postgresql_11.pkgs; postgresql12Packages = recurseIntoAttrs postgresql_12.pkgs; - postgresql13Packages = pkgs.postgresqlPackages; + postgresql13Packages = postgresqlPackages; + postgresql14Packages = recurseIntoAttrs postgresql_14.pkgs; postgresql_jdbc = callPackage ../development/java-modules/postgresql_jdbc { }; @@ -21330,7 +21402,7 @@ with pkgs; enableMDNS = true; enableDomainController = true; enableRegedit = true; - enableCephFS = !pkgs.stdenv.hostPlatform.isAarch64; + enableCephFS = !stdenv.hostPlatform.isAarch64; }); sambaFull = samba4Full; @@ -21382,7 +21454,7 @@ with pkgs; sogo = callPackage ../servers/web-apps/sogo { }; spacecookie = - haskell.lib.justStaticExecutables haskellPackages.spacecookie; + haskell.lib.compose.justStaticExecutables haskellPackages.spacecookie; spawn_fcgi = callPackage ../servers/http/spawn-fcgi { }; @@ -21737,12 +21809,13 @@ with pkgs; fscryptctl = callPackage ../os-specific/linux/fscryptctl { }; # unstable until the first 1.x release fscrypt-experimental = callPackage ../os-specific/linux/fscrypt { }; - fscryptctl-experimental = callPackage ../os-specific/linux/fscryptctl/legacy.nix { }; fwanalyzer = callPackage ../tools/filesystems/fwanalyzer { }; fwupd = callPackage ../os-specific/linux/firmware/fwupd { }; + fwupd-efi = callPackage ../os-specific/linux/firmware/fwupd-efi { }; + firmware-manager = callPackage ../os-specific/linux/firmware/firmware-manager { }; fwts = callPackage ../os-specific/linux/fwts { }; @@ -21770,7 +21843,7 @@ with pkgs; fatrace = callPackage ../os-specific/linux/fatrace { }; ffado = libsForQt5.callPackage ../os-specific/linux/ffado { - inherit (pkgs.linuxPackages) kernel; + inherit (linuxPackages) kernel; }; libffado = ffado; @@ -21853,6 +21926,8 @@ with pkgs; intel2200BGFirmware = callPackage ../os-specific/linux/firmware/intel2200BGFirmware { }; + intel-cmt-cat = callPackage ../os-specific/linux/intel-cmt-cat { }; + intel-compute-runtime = callPackage ../os-specific/linux/intel-compute-runtime { }; intel-ocl = callPackage ../os-specific/linux/intel-ocl { }; @@ -21980,11 +22055,11 @@ with pkgs; # This serves as a test for linuxPackages_custom linuxPackages_custom_tinyconfig_kernel = let - base = pkgs.linuxPackages.kernel; + base = linuxPackages.kernel; tinyLinuxPackages = linuxKernel.customPackage { inherit (base) version src; allowImportFromDerivation = false; - configfile = pkgs.linuxConfig { + configfile = linuxConfig { makeTarget = "tinyconfig"; src = base.src; }; @@ -22119,7 +22194,7 @@ with pkgs; enableCmdlib = true; }; - maddy = callPackage ../servers/maddy/default.nix { }; + maddy = callPackage ../servers/maddy { }; mbelib = callPackage ../development/libraries/audio/mbelib { }; @@ -22453,6 +22528,8 @@ with pkgs; seturgent = callPackage ../os-specific/linux/seturgent { }; + sgx-sdk = callPackage ../os-specific/linux/sgx-sdk { }; + shadow = callPackage ../os-specific/linux/shadow { }; sinit = callPackage ../os-specific/linux/sinit { @@ -22476,7 +22553,7 @@ with pkgs; sysdig = callPackage ../os-specific/linux/sysdig { kernel = null; - }; # pkgs.sysdig is a client, for a driver look at linuxPackagesFor + }; # sysdig is a client, for a driver look at linuxPackagesFor sysfsutils = callPackage ../os-specific/linux/sysfsutils { }; @@ -22739,6 +22816,10 @@ with pkgs; anarchism = callPackage ../data/documentation/anarchism { }; + ananicy = callPackage ../misc/ananicy { }; + + ananicy-cpp = callPackage ../misc/ananicy-cpp { }; + andagii = callPackage ../data/fonts/andagii { }; andika = callPackage ../data/fonts/andika { }; @@ -22768,6 +22849,8 @@ with pkgs; aurulent-sans = callPackage ../data/fonts/aurulent-sans { }; + ayu-theme-gtk = callPackage ../data/themes/ayu-theme-gtk { }; + b612 = callPackage ../data/fonts/b612 { }; babelstone-han = callPackage ../data/fonts/babelstone-han { }; @@ -23237,6 +23320,8 @@ with pkgs; netease-music-tui = callPackage ../applications/audio/netease-music-tui { }; + netease-cloud-music-gtk = callPackage ../applications/audio/netease-cloud-music-gtk { }; + nordic = callPackage ../data/themes/nordic { }; inherit (callPackages ../data/fonts/noto-fonts {}) @@ -23539,7 +23624,7 @@ with pkgs; tenderness = callPackage ../data/fonts/tenderness { }; terminus_font = callPackage ../data/fonts/terminus-font - { inherit (buildPackages.xorg) fonttosfnt mkfontscale; }; + { inherit (buildPackages.xorg) mkfontscale; }; terminus_font_ttf = callPackage ../data/fonts/terminus-font-ttf { }; @@ -23620,6 +23705,8 @@ with pkgs; inherit (gnome) gnome-shell; }; + vimix-icon-theme = callPackage ../data/icons/vimix-icon-theme { }; + vistafonts = callPackage ../data/fonts/vista-fonts { }; vistafonts-chs = callPackage ../data/fonts/vista-fonts-chs { }; @@ -23761,7 +23848,9 @@ with pkgs; antiword = callPackage ../applications/office/antiword {}; - anup = callPackage ../applications/misc/anup {}; + anup = callPackage ../applications/misc/anup { + inherit (darwin.apple_sdk.frameworks) Security; + }; anytype = callPackage ../applications/misc/anytype { }; @@ -23769,6 +23858,8 @@ with pkgs; apache-directory-studio = callPackage ../applications/networking/apache-directory-studio {}; + apkeep = callPackage ../tools/misc/apkeep { }; + apngasm = callPackage ../applications/graphics/apngasm {}; apngasm_2 = callPackage ../applications/graphics/apngasm/2.nix {}; @@ -23853,8 +23944,6 @@ with pkgs; cheesecutter = callPackage ../applications/audio/cheesecutter { }; - corefm = libsForQt5.callPackage ../applications/misc/corefm { }; - milkytracker = callPackage ../applications/audio/milkytracker { }; ptcollab = libsForQt5.callPackage ../applications/audio/ptcollab { }; @@ -23992,7 +24081,7 @@ with pkgs; gtk = gtk3; }; - bluej = callPackage ../applications/editors/bluej/default.nix { + bluej = callPackage ../applications/editors/bluej { jdk = jetbrains.jdk; }; @@ -24122,6 +24211,8 @@ with pkgs; boops = callPackage ../applications/audio/boops { }; + ChowKick = callPackage ../applications/audio/ChowKick { }; + CHOWTapeModel = callPackage ../applications/audio/CHOWTapeModel { }; chromium = callPackage ../applications/networking/browsers/chromium (config.chromium or {}); @@ -24140,6 +24231,10 @@ with pkgs; clapper = callPackage ../applications/video/clapper { }; + ciscoPacketTracer7 = callPackage ../applications/networking/cisco-packet-tracer/7.nix { }; + + ciscoPacketTracer8 = callPackage ../applications/networking/cisco-packet-tracer/8.nix { }; + claws-mail-gtk2 = callPackage ../applications/networking/mailreaders/claws-mail { inherit (xorg) libSM; useGtk3 = false; @@ -24197,8 +24292,6 @@ with pkgs; copyq = libsForQt5.callPackage ../applications/misc/copyq { }; - coreaction = libsForQt5.callPackage ../applications/misc/coreaction { }; - corectrl = libsForQt5.callPackage ../applications/misc/corectrl { }; coriander = callPackage ../applications/video/coriander { @@ -24209,8 +24302,6 @@ with pkgs; ffmpeg = ffmpeg-full; }; - coreimage = libsForQt5.callPackage ../applications/graphics/coreimage { }; - csa = callPackage ../applications/audio/csa { }; csound = callPackage ../applications/audio/csound { }; @@ -24288,9 +24379,9 @@ with pkgs; dablin = callPackage ../applications/radio/dablin { }; - darcs = haskell.lib.overrideCabal (haskell.lib.justStaticExecutables haskellPackages.darcs) (drv: { + darcs = haskell.lib.compose.overrideCabal (drv: { configureFlags = (lib.remove "-flibrary" drv.configureFlags or []) ++ ["-f-library"]; - }); + }) (haskell.lib.compose.justStaticExecutables haskellPackages.darcs); darcs-to-git = callPackage ../applications/version-management/git-and-tools/darcs-to-git { }; @@ -24352,7 +24443,7 @@ with pkgs; djvu2pdf = callPackage ../tools/typesetting/djvu2pdf { }; djview = libsForQt5.callPackage ../applications/graphics/djview { }; - djview4 = pkgs.djview; + djview4 = djview; dmenu = callPackage ../applications/misc/dmenu { }; dmenu-wayland = callPackage ../applications/misc/dmenu/wayland.nix { }; @@ -24624,7 +24715,7 @@ with pkgs; gpg-mdp = callPackage ../applications/misc/gpg-mdp { }; - greenfoot = callPackage ../applications/editors/greenfoot/default.nix { + greenfoot = callPackage ../applications/editors/greenfoot { jdk = jetbrains.jdk; }; @@ -24778,7 +24869,7 @@ with pkgs; genxword = callPackage ../applications/misc/genxword { }; - geoipupdate = callPackage ../applications/misc/geoipupdate/default.nix { }; + geoipupdate = callPackage ../applications/misc/geoipupdate { }; ghostwriter = libsForQt5.callPackage ../applications/editors/ghostwriter { }; @@ -24993,7 +25084,7 @@ with pkgs; filezilla = callPackage ../applications/networking/ftp/filezilla { }; firefoxPackages = recurseIntoAttrs (callPackage ../applications/networking/browsers/firefox/packages.nix { - callPackage = pkgs.newScope { + callPackage = newScope { inherit (rustPackages) cargo rustc; libpng = libpng_apng; gnused = gnused_422; @@ -25270,7 +25361,7 @@ with pkgs; linssid = libsForQt5.callPackage ../applications/networking/linssid { }; - deadd-notification-center = callPackage ../applications/misc/deadd-notification-center/default.nix { }; + deadd-notification-center = callPackage ../applications/misc/deadd-notification-center { }; lollypop = callPackage ../applications/audio/lollypop { }; @@ -25498,12 +25589,12 @@ with pkgs; hivelytracker = callPackage ../applications/audio/hivelytracker { }; - hledger = haskell.lib.justStaticExecutables haskellPackages.hledger; + hledger = haskell.lib.compose.justStaticExecutables haskellPackages.hledger; hledger-check-fancyassertions = callPackage ../applications/office/hledger-check-fancyassertions { }; - hledger-iadd = haskell.lib.justStaticExecutables haskellPackages.hledger-iadd; - hledger-interest = haskell.lib.justStaticExecutables haskellPackages.hledger-interest; - hledger-ui = haskell.lib.justStaticExecutables haskellPackages.hledger-ui; - hledger-web = haskell.lib.justStaticExecutables haskellPackages.hledger-web; + hledger-iadd = haskell.lib.compose.justStaticExecutables haskellPackages.hledger-iadd; + hledger-interest = haskell.lib.compose.justStaticExecutables haskellPackages.hledger-interest; + hledger-ui = haskell.lib.compose.justStaticExecutables haskellPackages.hledger-ui; + hledger-web = haskell.lib.compose.justStaticExecutables haskellPackages.hledger-web; homebank = callPackage ../applications/office/homebank { gtk = gtk3; @@ -25521,9 +25612,9 @@ with pkgs; hdl-dump = callPackage ../tools/misc/hdl-dump { }; - hpack = haskell.lib.justStaticExecutables haskellPackages.hpack; + hpack = haskell.lib.compose.justStaticExecutables haskellPackages.hpack; - hpcg = callPackage ../tools/misc/hpcg/default.nix { }; + hpcg = callPackage ../tools/misc/hpcg { }; hpl = callPackage ../tools/misc/hpl { }; @@ -25580,6 +25671,8 @@ with pkgs; leftwm = callPackage ../applications/window-managers/leftwm { }; + levant = callPackage ../applications/networking/cluster/levant { }; + lwm = callPackage ../applications/window-managers/lwm { }; marker = callPackage ../applications/editors/marker { }; @@ -25592,11 +25685,11 @@ with pkgs; pinboard = with python3Packages; toPythonApplication pinboard; - pinboard-notes-backup = haskell.lib.justStaticExecutables haskellPackages.pinboard-notes-backup; + pinboard-notes-backup = haskell.lib.compose.justStaticExecutables haskellPackages.pinboard-notes-backup; pixelnuke = callPackage ../applications/graphics/pixelnuke { }; - pmbootstrap = python3Packages.callPackage ../tools/misc/pmbootstrap/default.nix { }; + pmbootstrap = python3Packages.callPackage ../tools/misc/pmbootstrap { }; shepherd = nodePackages."@nerdwallet/shepherd"; @@ -25628,6 +25721,8 @@ with pkgs; withPortAudio = stdenv.isDarwin; }; + srain = callPackage ../applications/networking/irc/srain { }; + super-productivity = callPackage ../applications/office/super-productivity { }; wlroots = callPackage ../development/libraries/wlroots { @@ -25724,11 +25819,11 @@ with pkgs; workstyle = callPackage ../applications/window-managers/i3/workstyle.nix { }; - windowchef = callPackage ../applications/window-managers/windowchef/default.nix { }; + windowchef = callPackage ../applications/window-managers/windowchef { }; wmfocus = callPackage ../applications/window-managers/i3/wmfocus.nix { }; - wmfs = callPackage ../applications/window-managers/wmfs/default.nix { }; + wmfs = callPackage ../applications/window-managers/wmfs { }; i810switch = callPackage ../os-specific/linux/i810switch { }; @@ -25834,7 +25929,7 @@ with pkgs; img2pdf = with python3Packages; toPythonApplication img2pdf; - imgbrd-grabber = qt5.callPackage ../applications/graphics/imgbrd-grabber/default.nix { + imgbrd-grabber = qt5.callPackage ../applications/graphics/imgbrd-grabber { typescript = nodePackages.typescript; }; @@ -25928,6 +26023,8 @@ with pkgs; dupd = callPackage ../tools/misc/dupd { }; + jconvolver = callPackage ../applications/audio/jconvolver { }; + jdupes = callPackage ../tools/misc/jdupes { }; jed = callPackage ../applications/editors/jed { }; @@ -26075,6 +26172,8 @@ with pkgs; kube-score = callPackage ../applications/networking/cluster/kube-score { }; + kubectl-evict-pod = callPackage ../applications/networking/cluster/kubectl-evict-pod { }; + kubeval = callPackage ../applications/networking/cluster/kubeval { }; kubeval-schema = callPackage ../applications/networking/cluster/kubeval/schema.nix { }; @@ -26139,6 +26238,8 @@ with pkgs; chart-testing = callPackage ../applications/networking/cluster/helm/chart-testing { }; + helm-docs = callPackage ../applications/networking/cluster/helm-docs { }; + kubetail = callPackage ../applications/networking/cluster/kubetail { } ; kupfer = callPackage ../applications/misc/kupfer { }; @@ -26268,6 +26369,8 @@ with pkgs; lighthouse = callPackage ../applications/misc/lighthouse { }; + lighthouse-steamvr = callPackage ../tools/misc/lighthouse-steamvr { }; + lighttable = callPackage ../applications/editors/lighttable {}; libdsk = callPackage ../misc/emulators/libdsk { }; @@ -26474,7 +26577,7 @@ with pkgs; inherit (darwin.apple_sdk.frameworks) ApplicationServices; }; - mercurialFull = appendToName "full" (pkgs.mercurial.override { fullBuild = true; }); + mercurialFull = appendToName "full" (mercurial.override { fullBuild = true; }); merkaartor = libsForQt5.callPackage ../applications/misc/merkaartor { }; @@ -26588,7 +26691,7 @@ with pkgs; mop = callPackage ../applications/misc/mop { }; - mopidyPackages = callPackages ../applications/audio/mopidy/default.nix { + mopidyPackages = callPackages ../applications/audio/mopidy { python = python3; }; @@ -26670,6 +26773,8 @@ with pkgs; nload = callPackage ../applications/networking/nload { }; + nali = callPackage ../applications/networking/nali { }; + normalize = callPackage ../applications/audio/normalize { }; mailspring = callPackage ../applications/networking/mailreaders/mailspring {}; @@ -26773,6 +26878,8 @@ with pkgs; neocomp = callPackage ../applications/window-managers/neocomp { }; + nerd-font-patcher = callPackage ../applications/misc/nerd-font-patcher { }; + newsflash = callPackage ../applications/networking/feedreaders/newsflash { }; nicotine-plus = callPackage ../applications/networking/soulseek/nicotine-plus { }; @@ -26907,16 +27014,7 @@ with pkgs; shotcut = libsForQt5.callPackage ../applications/video/shotcut { }; shogun = callPackage ../applications/science/machine-learning/shogun { - stdenv = gcc8Stdenv; - - # Workaround for the glibc abi version mismatch. - # Please note that opencv builds are by default disabled. - opencv = opencv3.override { - stdenv = gcc8Stdenv; - openexr = openexr.override { - stdenv = gcc8Stdenv; - }; - }; + opencv = opencv3; }; smplayer = libsForQt5.callPackage ../applications/video/smplayer { }; @@ -27033,6 +27131,8 @@ with pkgs; jdk = jdk11; }; + netcoredbg = callPackage ../development/tools/misc/netcoredbg { }; + ncdu = callPackage ../tools/misc/ncdu { }; ncdc = callPackage ../applications/networking/p2p/ncdc { }; @@ -27071,9 +27171,9 @@ with pkgs; muchsync = callPackage ../applications/networking/mailreaders/notmuch/muchsync.nix { }; - nufraw = callPackage ../applications/graphics/nufraw/default.nix { }; + nufraw = callPackage ../applications/graphics/nufraw { }; - nufraw-thumbnailer = callPackage ../applications/graphics/nufraw/default.nix { + nufraw-thumbnailer = callPackage ../applications/graphics/nufraw { addThumbnailer = true; }; @@ -27211,6 +27311,10 @@ with pkgs; pantalaimon = python3Packages.callPackage ../applications/networking/instant-messengers/pantalaimon { }; + pantalaimon-headless = python3Packages.callPackage ../applications/networking/instant-messengers/pantalaimon { + enableDbusUi = false; + }; + pavucontrol = callPackage ../applications/audio/pavucontrol { }; paraview = libsForQt5.callPackage ../applications/graphics/paraview { }; @@ -27231,9 +27335,7 @@ with pkgs; pcloud = callPackage ../applications/networking/pcloud { }; - pcsxr = callPackage ../misc/emulators/pcsxr { - ffmpeg = ffmpeg_2; - }; + pcsxr = callPackage ../misc/emulators/pcsxr { }; pcsx2 = callPackage ../misc/emulators/pcsx2 { wxGTK = wxGTK30-gtk3; @@ -27312,10 +27414,8 @@ with pkgs; picoloop = callPackage ../applications/audio/picoloop { }; pidgin = callPackage ../applications/networking/instant-messengers/pidgin { - openssl = if config.pidgin.openssl or true then openssl else null; - gnutls = if config.pidgin.gnutls or false then gnutls else null; - libgcrypt = if config.pidgin.gnutls or false then libgcrypt else null; - startupnotification = libstartup_notification; + withOpenssl = config.pidgin.openssl or true; + withGnutls = config.pidgin.gnutls or false; plugins = []; }; @@ -27345,6 +27445,8 @@ with pkgs; pika-backup = callPackage ../applications/backup/pika-backup { }; + pur = callPackage ../development/tools/pur { }; + purple-discord = callPackage ../applications/networking/instant-messengers/pidgin-plugins/purple-discord { }; purple-hangouts = callPackage ../applications/networking/instant-messengers/pidgin-plugins/purple-hangouts { }; @@ -27985,6 +28087,8 @@ with pkgs; super-slicer-staging = (callPackage ../applications/misc/prusa-slicer/super-slicer.nix { }).staging; + snapmaker-luban = callPackage ../applications/misc/snapmaker-luban { }; + robustirc-bridge = callPackage ../servers/irc/robustirc-bridge { }; skrooge = libsForQt5.callPackage ../applications/office/skrooge {}; @@ -28094,7 +28198,7 @@ with pkgs; inherit (callPackages ../applications/version-management/subversion { sasl = cyrus_sasl; }) subversion_1_10 subversion; - subversionClient = appendToName "client" (pkgs.subversion.override { + subversionClient = appendToName "client" (subversion.override { bdbSupport = false; perlBindings = true; pythonBindings = true; @@ -28113,6 +28217,8 @@ with pkgs; git = gitMinimal; }; + surge-XT = callPackage ../applications/audio/surge-XT { }; + survex = callPackage ../applications/misc/survex { inherit (darwin.apple_sdk.frameworks) Carbon Cocoa; }; @@ -28155,7 +28261,6 @@ with pkgs; }; synergy = libsForQt5.callPackage ../applications/misc/synergy { - stdenv = if stdenv.cc.isClang then llvmPackages_5.stdenv else stdenv; inherit (darwin.apple_sdk.frameworks) ApplicationServices Carbon Cocoa CoreServices ScreenSaver; }; @@ -28194,7 +28299,7 @@ with pkgs; teamspeak_client = libsForQt5.callPackage ../applications/networking/instant-messengers/teamspeak/client.nix { }; teamspeak_server = callPackage ../applications/networking/instant-messengers/teamspeak/server.nix { }; - taskell = haskell.lib.justStaticExecutables haskellPackages.taskell; + taskell = haskell.lib.compose.justStaticExecutables haskellPackages.taskell; tap-plugins = callPackage ../applications/audio/tap-plugins { }; @@ -28244,6 +28349,8 @@ with pkgs; temporal = callPackage ../applications/networking/cluster/temporal { }; + tenacity = callPackage ../applications/audio/tenacity { wxGTK = wxGTK31-gtk3; }; + tendermint = callPackage ../tools/networking/tendermint { }; termdbms = callPackage ../development/tools/database/termdbms { }; @@ -28276,7 +28383,7 @@ with pkgs; thonny = callPackage ../applications/editors/thonny { }; thunderbirdPackages = recurseIntoAttrs (callPackage ../applications/networking/mailreaders/thunderbird/packages.nix { - callPackage = pkgs.newScope { + callPackage = newScope { inherit (rustPackages) cargo rustc; libpng = libpng_apng; gnused = gnused_422; @@ -28318,7 +28425,9 @@ with pkgs; timg = callPackage ../tools/graphics/timg { }; - timidity = callPackage ../tools/misc/timidity { }; + timidity = callPackage ../tools/misc/timidity { + inherit (darwin.apple_sdk.frameworks) CoreAudio; + }; tint2 = callPackage ../applications/misc/tint2 { }; @@ -28495,7 +28604,7 @@ with pkgs; uroboros = callPackage ../tools/system/uroboros { }; - uuagc = haskell.lib.justStaticExecutables haskellPackages.uuagc; + uuagc = haskell.lib.compose.justStaticExecutables haskellPackages.uuagc; uucp = callPackage ../tools/misc/uucp { }; @@ -28562,7 +28671,7 @@ with pkgs; vimacs = callPackage ../applications/editors/vim/vimacs.nix { }; - vimv = callPackage ../tools/misc/vimv/default.nix { }; + vimv = callPackage ../tools/misc/vimv { }; qpdfview = libsForQt5.callPackage ../applications/misc/qpdfview {}; @@ -28588,7 +28697,7 @@ with pkgs; neovim-qt = libsForQt5.callPackage ../applications/editors/neovim/qt.nix { }; gnvim-unwrapped = callPackage ../applications/editors/neovim/gnvim { - gtk = pkgs.gtk3; + gtk = gtk3; }; gnvim = callPackage ../applications/editors/neovim/gnvim/wrapper.nix { }; @@ -28722,6 +28831,11 @@ with pkgs; vscodium-fhs = vscodium.fhs; vscodium-fhsWithPackages = vscodium.fhsWithPackages; + openvscode-server = callPackage ../servers/openvscode-server { + inherit (darwin.apple_sdk.frameworks) AppKit Cocoa Security; + inherit (darwin) cctools; + }; + code-server = callPackage ../servers/code-server { inherit (darwin.apple_sdk.frameworks) AppKit Cocoa Security; inherit (darwin) cctools; @@ -29080,6 +29194,8 @@ with pkgs; picom = callPackage ../applications/window-managers/picom {}; + picom-next = callPackage ../applications/window-managers/picom/picom-next.nix { }; + xd = callPackage ../applications/networking/p2p/xd {}; xdaliclock = callPackage ../tools/misc/xdaliclock {}; @@ -29269,7 +29385,7 @@ with pkgs; inherit (gnome2) scrollkeeper libglade; }; - xygrib = libsForQt514.callPackage ../applications/misc/xygrib/default.nix {}; + xygrib = libsForQt514.callPackage ../applications/misc/xygrib {}; xzgv = callPackage ../applications/graphics/xzgv { }; @@ -29398,6 +29514,7 @@ with pkgs; alfis = callPackage ../applications/blockchains/alfis { inherit (darwin.apple_sdk.frameworks) Cocoa WebKit; + inherit (gnome) zenity; }; alfis-nogui = alfis.override { withGui = false; @@ -29406,13 +29523,17 @@ with pkgs; balanceofsatoshis = nodePackages.balanceofsatoshis; bitcoin = libsForQt5.callPackage ../applications/blockchains/bitcoin { + boost = boost17x; miniupnpc = miniupnpc_2; withGui = true; + inherit (darwin) autoSignDarwinBinariesHook; }; bitcoind = callPackage ../applications/blockchains/bitcoin { + boost = boost17x; miniupnpc = miniupnpc_2; withGui = false; + inherit (darwin) autoSignDarwinBinariesHook; }; bitcoind-knots = callPackage ../applications/blockchains/bitcoin-knots { miniupnpc = miniupnpc_2; }; @@ -29688,7 +29809,7 @@ with pkgs; bean-add = callPackage ../applications/office/beancount/bean-add.nix { }; - bench = haskell.lib.justStaticExecutables haskellPackages.bench; + bench = haskell.lib.compose.justStaticExecutables haskellPackages.bench; beret = callPackage ../games/beret { }; @@ -29740,13 +29861,13 @@ with pkgs; chocolateDoom = callPackage ../games/chocolate-doom { }; - clonehero-unwrapped = pkgs.callPackage ../games/clonehero { }; + clonehero-unwrapped = callPackage ../games/clonehero { }; - clonehero = pkgs.callPackage ../games/clonehero/fhs-wrapper.nix { }; + clonehero = callPackage ../games/clonehero/fhs-wrapper.nix { }; crispyDoom = callPackage ../games/crispy-doom { }; - vintagestory = callPackage ../games/vintagestory/default.nix { }; + vintagestory = callPackage ../games/vintagestory { }; cri-o = callPackage ../applications/virtualization/cri-o/wrapper.nix { }; cri-o-unwrapped = callPackage ../applications/virtualization/cri-o { }; @@ -29798,7 +29919,11 @@ with pkgs; ddnet = callPackage ../games/ddnet { }; - devilutionx = callPackage ../games/devilutionx {}; + devilutionx = callPackage ../games/devilutionx { + SDL2 = SDL2.override { + withStatic = true; + }; + }; dhewm3 = callPackage ../games/dhewm3 {}; @@ -30176,7 +30301,7 @@ with pkgs; openarena = callPackage ../games/openarena { }; opendungeons = callPackage ../games/opendungeons { - ogre = ogre1_9; + ogre = ogre1_10; }; openlierox = callPackage ../games/openlierox { }; @@ -30438,22 +30563,14 @@ with pkgs; steam-acf = callPackage ../tools/games/steam-acf { }; protontricks = python3Packages.callPackage ../tools/package-management/protontricks { - winetricks = winetricks.override { - # Remove default build of wine to reduce closure size. - # Falls back to wine in PATH. - wine = null; - }; - - inherit steam-run yad; + inherit winetricks steam-run yad; }; protonup = with python3Packages; toPythonApplication protonup; sdlpop = callPackage ../games/sdlpop { }; - stepmania = callPackage ../games/stepmania { - ffmpeg = ffmpeg_2; - }; + stepmania = callPackage ../games/stepmania { }; streamlit = python3Packages.callPackage ../applications/science/machine-learning/streamlit { }; @@ -30723,7 +30840,7 @@ with pkgs; inherit (cinnamon) mint-x-icons mint-y-icons; enlightenment = recurseIntoAttrs (callPackage ../desktops/enlightenment { - callPackage = newScope pkgs.enlightenment; + callPackage = newScope enlightenment; }); gnome2 = recurseIntoAttrs (callPackage ../desktops/gnome-2 { }); @@ -30780,7 +30897,7 @@ with pkgs; }; arcan = recurseIntoAttrs (callPackage ../desktops/arcan { - callPackage = newScope pkgs.arcan; + callPackage = newScope arcan; }); xfce = recurseIntoAttrs (callPackage ../desktops/xfce { }); @@ -31045,7 +31162,7 @@ with pkgs; snpeff = callPackage ../applications/science/biology/snpeff { }; - somafm-cli = callPackage ../tools/misc/somafm-cli/default.nix { }; + somafm-cli = callPackage ../tools/misc/somafm-cli { }; somatic-sniper = callPackage ../applications/science/biology/somatic-sniper { }; @@ -31418,6 +31535,8 @@ with pkgs; key = callPackage ../applications/science/logic/key { }; + keymapviz = callPackage ../tools/misc/keymapviz { }; + lean = callPackage ../applications/science/logic/lean {}; lean2 = callPackage ../applications/science/logic/lean2 {}; lean3 = lean; @@ -31890,7 +32009,9 @@ with pkgs; click = callPackage ../applications/networking/cluster/click { }; - clinfo = callPackage ../tools/system/clinfo { }; + clinfo = callPackage ../tools/system/clinfo { + inherit (darwin.apple_sdk.frameworks) OpenCL; + }; clpeak = callPackage ../tools/misc/clpeak { }; @@ -32243,6 +32364,7 @@ with pkgs; }) nix nixStable + nix_2_3 nix_2_4 nixUnstable; @@ -32310,8 +32432,8 @@ with pkgs; nixos = configuration: let - c = import (pkgs.path + "/nixos/lib/eval-config.nix") { - inherit (pkgs.stdenv.hostPlatform) system; + c = import (path + "/nixos/lib/eval-config.nix") { + inherit (stdenv.hostPlatform) system; modules = [( { lib, ... }: { @@ -32361,7 +32483,7 @@ with pkgs; */ nixosTesting = (import ../../nixos/lib/testing-python.nix { - inherit (pkgs.stdenv.hostPlatform) system; + inherit (stdenv.hostPlatform) system; inherit pkgs; extraConfigurations = [( { lib, ... }: { @@ -32375,14 +32497,14 @@ with pkgs; loadedTest = if builtins.typeOf test == "path" then import test else test; - calledTest = if pkgs.lib.isFunction loadedTest + calledTest = if lib.isFunction loadedTest then callPackage loadedTest {} else loadedTest; in nixosTesting.makeTest calledTest; nixosOptionsDoc = attrs: - (import ../../nixos/lib/make-options-doc/default.nix) + (import ../../nixos/lib/make-options-doc) ({ inherit pkgs lib; } // attrs); nixos-install-tools = callPackage ../tools/nix/nixos-install-tools { }; @@ -32395,13 +32517,13 @@ with pkgs; nix-eval-jobs = callPackage ../tools/package-management/nix-eval-jobs { }; - nix-doc = callPackage ../tools/package-management/nix-doc { }; + nix-doc = callPackage ../tools/package-management/nix-doc { nix = nix_2_3; }; nix-bundle = callPackage ../tools/package-management/nix-bundle { }; - nix-delegate = haskell.lib.justStaticExecutables haskellPackages.nix-delegate; - nix-deploy = haskell.lib.justStaticExecutables haskellPackages.nix-deploy; - nix-diff = haskell.lib.justStaticExecutables haskellPackages.nix-diff; + nix-delegate = haskell.lib.compose.justStaticExecutables haskellPackages.nix-delegate; + nix-deploy = haskell.lib.compose.justStaticExecutables haskellPackages.nix-deploy; + nix-diff = haskell.lib.compose.justStaticExecutables haskellPackages.nix-diff; nix-du = callPackage ../tools/package-management/nix-du { inherit (darwin.apple_sdk.frameworks) Security; @@ -32415,9 +32537,9 @@ with pkgs; }; nix-index = callPackage ../tools/package-management/nix-index/wrapper.nix { }; - nix-linter = haskell.lib.justStaticExecutables (haskellPackages.nix-linter); + nix-linter = haskell.lib.compose.justStaticExecutables (haskellPackages.nix-linter); - nixos-option = callPackage ../tools/nix/nixos-option { }; + nixos-option = callPackage ../tools/nix/nixos-option { nix = nix_2_3; }; nix-pin = callPackage ../tools/package-management/nix-pin { }; @@ -32446,7 +32568,7 @@ with pkgs; nix-top = callPackage ../tools/package-management/nix-top { }; - nix-tree = haskell.lib.justStaticExecutables (haskellPackages.nix-tree); + nix-tree = haskell.lib.compose.justStaticExecutables (haskellPackages.nix-tree); nix-universal-prefetch = callPackage ../tools/package-management/nix-universal-prefetch { }; @@ -32462,7 +32584,7 @@ with pkgs; nix-simple-deploy = callPackage ../tools/package-management/nix-simple-deploy { }; - nixfmt = haskell.lib.justStaticExecutables haskellPackages.nixfmt; + nixfmt = haskell.lib.compose.justStaticExecutables haskellPackages.nixfmt; nixpkgs-fmt = callPackage ../tools/nix/nixpkgs-fmt { }; @@ -32619,7 +32741,7 @@ with pkgs; redprl = callPackage ../applications/science/logic/redprl { }; - renderizer = pkgs.callPackage ../development/tools/renderizer {}; + renderizer = callPackage ../development/tools/renderizer {}; retroarchBare = callPackage ../misc/emulators/retroarch { inherit (darwin) libobjc; @@ -32698,8 +32820,8 @@ with pkgs; mfcl2740dwlpr = callPackage ../misc/cups/drivers/mfcl2740dwlpr { }; # This driver is only available as a 32 bit proprietary binary driver - mfcl3770cdwlpr = (callPackage ../misc/cups/drivers/brother/mfcl3770cdw/default.nix { }).driver; - mfcl3770cdwcupswrapper = (callPackage ../misc/cups/drivers/brother/mfcl3770cdw/default.nix { }).cupswrapper; + mfcl3770cdwlpr = (callPackage ../misc/cups/drivers/brother/mfcl3770cdw { }).driver; + mfcl3770cdwcupswrapper = (callPackage ../misc/cups/drivers/brother/mfcl3770cdw { }).cupswrapper; mfcl8690cdwcupswrapper = callPackage ../misc/cups/drivers/mfcl8690cdwcupswrapper { }; mfcl8690cdwlpr = callPackage ../misc/cups/drivers/mfcl8690cdwlpr { }; @@ -32707,7 +32829,7 @@ with pkgs; mfc9140cdncupswrapper = callPackage ../misc/cups/drivers/mfc9140cdncupswrapper { }; mfc9140cdnlpr = callPackage ../misc/cups/drivers/mfc9140cdnlpr { }; - samsung-unified-linux-driver_1_00_36 = callPackage ../misc/cups/drivers/samsung/1.00.36/default.nix { }; + samsung-unified-linux-driver_1_00_36 = callPackage ../misc/cups/drivers/samsung/1.00.36 { }; samsung-unified-linux-driver_1_00_37 = callPackage ../misc/cups/drivers/samsung/1.00.37.nix { }; samsung-unified-linux-driver_4_00_39 = callPackage ../misc/cups/drivers/samsung/4.00.39 { }; samsung-unified-linux-driver_4_01_17 = callPackage ../misc/cups/drivers/samsung/4.01.17.nix { }; @@ -33010,7 +33132,9 @@ with pkgs; wiki-js = callPackage ../servers/web-apps/wiki-js { }; - wiki-tui = callPackage ../misc/wiki-tui { }; + wiki-tui = callPackage ../misc/wiki-tui { + inherit (darwin.apple_sdk.frameworks) Security; + }; winePackagesFor = wineBuild: lib.makeExtensible (self: with self; { callPackage = newScope self; @@ -33018,7 +33142,7 @@ with pkgs; inherit wineBuild; inherit (callPackage ./wine-packages.nix {}) - minimal base full stable unstable staging fonts; + minimal base full stable stableFull unstable unstableFull staging stagingFull fonts; }); winePackages = recurseIntoAttrs (winePackagesFor (config.wine.build or "wine32")); @@ -33549,7 +33673,7 @@ with pkgs; inherit (darwin.apple_sdk.frameworks) DiskArbitration Foundation IOKit; }; - cagebreak = callPackage ../applications/window-managers/cagebreak/default.nix { }; + cagebreak = callPackage ../applications/window-managers/cagebreak { }; psftools = callPackage ../os-specific/linux/psftools {}; @@ -33565,5 +33689,9 @@ with pkgs; zktree = callPackage ../applications/misc/zktree {}; + zrythm = callPackage ../applications/audio/zrythm { + inherit (plasma5Packages) breeze-icons; + }; + zthrottle = callPackage ../tools/misc/zthrottle { }; } diff --git a/pkgs/top-level/cubocore-packages.nix b/pkgs/top-level/cubocore-packages.nix new file mode 100644 index 000000000000..3c6ed65e9286 --- /dev/null +++ b/pkgs/top-level/cubocore-packages.nix @@ -0,0 +1,94 @@ +{ newScope, lxqt, lib, libsForQt5 }: + +let + packages = self: with self; { + + # Libs + libcprime = libsForQt5.callPackage ../applications/misc/cubocore-packages/libcprime { }; + + libcsys = libsForQt5.callPackage ../applications/misc/cubocore-packages/libcsys { }; + + # Apps + coreaction = libsForQt5.callPackage ../applications/misc/cubocore-packages/coreaction { + inherit libcprime libcsys; + }; + + corearchiver = libsForQt5.callPackage ../applications/misc/cubocore-packages/corearchiver { + inherit libcprime libcsys; + }; + + corefm = libsForQt5.callPackage ../applications/misc/cubocore-packages/corefm { + inherit libcprime libcsys; + }; + + coregarage = libsForQt5.callPackage ../applications/misc/cubocore-packages/coregarage { + inherit libcprime libcsys; + }; + + corehunt = libsForQt5.callPackage ../applications/misc/cubocore-packages/corehunt { + inherit libcprime libcsys; + }; + + coreimage = libsForQt5.callPackage ../applications/misc/cubocore-packages/coreimage { + inherit libcprime libcsys; + }; + + coreinfo = libsForQt5.callPackage ../applications/misc/cubocore-packages/coreinfo { + inherit libcprime libcsys; + }; + + corekeyboard = libsForQt5.callPackage ../applications/misc/cubocore-packages/corekeyboard { + inherit libcprime libcsys; + }; + + corepad = libsForQt5.callPackage ../applications/misc/cubocore-packages/corepad { + inherit libcprime libcsys; + }; + + corepaint = libsForQt5.callPackage ../applications/misc/cubocore-packages/corepaint { + inherit libcprime libcsys; + }; + + corepdf = libsForQt5.callPackage ../applications/misc/cubocore-packages/corepdf { + inherit libcprime libcsys; + }; + + corepins = libsForQt5.callPackage ../applications/misc/cubocore-packages/corepins { + inherit libcprime libcsys; + }; + + corerenamer = libsForQt5.callPackage ../applications/misc/cubocore-packages/corerenamer { + inherit libcprime libcsys; + }; + + coreshot = libsForQt5.callPackage ../applications/misc/cubocore-packages/coreshot { + inherit libcprime libcsys; + }; + + corestats = libsForQt5.callPackage ../applications/misc/cubocore-packages/corestats { + inherit libcprime libcsys; + }; + + corestuff = libsForQt5.callPackage ../applications/misc/cubocore-packages/corestuff { + inherit libcprime libcsys; + }; + + coreterminal = libsForQt5.callPackage ../applications/misc/cubocore-packages/coreterminal { + inherit (lxqt) qtermwidget; + inherit libcprime libcsys; + }; + + coretime = libsForQt5.callPackage ../applications/misc/cubocore-packages/coretime { + inherit libcprime libcsys; + }; + + coretoppings = libsForQt5.callPackage ../applications/misc/cubocore-packages/coretoppings { + inherit libcprime libcsys; + }; + + coreuniverse = libsForQt5.callPackage ../applications/misc/cubocore-packages/coreuniverse { + inherit libcprime libcsys; + }; + }; +in +lib.makeScope newScope packages diff --git a/pkgs/top-level/dhall-packages.nix b/pkgs/top-level/dhall-packages.nix index 173c37f49214..1910cb372741 100644 --- a/pkgs/top-level/dhall-packages.nix +++ b/pkgs/top-level/dhall-packages.nix @@ -17,16 +17,23 @@ let buildDhallDirectoryPackage = callPackage ../development/interpreters/dhall/build-dhall-directory-package.nix { }; + buildDhallUrl = + callPackage ../development/interpreters/dhall/build-dhall-url.nix { }; + in { inherit callPackage buildDhallPackage buildDhallGitHubPackage buildDhallDirectoryPackage + buildDhallUrl ; lib = import ../development/dhall-modules/lib.nix { inherit lib; }; + dhall-grafana = + callPackage ../development/dhall-modules/dhall-grafana.nix { }; + dhall-kubernetes = callPackage ../development/dhall-modules/dhall-kubernetes.nix { }; diff --git a/pkgs/top-level/dotnet-packages.nix b/pkgs/top-level/dotnet-packages.nix index 1ca8621b7114..f0fcef733837 100644 --- a/pkgs/top-level/dotnet-packages.nix +++ b/pkgs/top-level/dotnet-packages.nix @@ -6,7 +6,6 @@ , fetchFromGitHub , fetchNuGet , glib -, pkg-config , mono , overrides ? {} }: diff --git a/pkgs/top-level/haskell-packages.nix b/pkgs/top-level/haskell-packages.nix index 3b89aabf1fd1..4f6567ca230a 100644 --- a/pkgs/top-level/haskell-packages.nix +++ b/pkgs/top-level/haskell-packages.nix @@ -19,13 +19,13 @@ let "ghcHEAD" ]; - haskellLib = import ../development/haskell-modules/lib.nix { + haskellLibUncomposable = import ../development/haskell-modules/lib.nix { inherit (pkgs) lib; inherit pkgs; }; callPackage = newScope { - inherit haskellLib; + haskellLib = haskellLibUncomposable.compose; overrides = pkgs.haskell.packageOverrides; }; @@ -44,7 +44,7 @@ let inherit (pkgs.haskell) compiler packages; in { - lib = haskellLib; + lib = haskellLibUncomposable; package-list = callPackage ../development/haskell-modules/package-list.nix {}; diff --git a/pkgs/top-level/kodi-packages.nix b/pkgs/top-level/kodi-packages.nix index 4d5af021db0b..a7a24a2edb78 100644 --- a/pkgs/top-level/kodi-packages.nix +++ b/pkgs/top-level/kodi-packages.nix @@ -3,7 +3,7 @@ with lib; let - inherit (libretro) snes9x; + inherit (libretro) genesis-plus-gx snes9x; in let self = rec { @@ -72,14 +72,20 @@ let self = rec { snes = callPackage ../applications/video/kodi-packages/controllers { controller = "snes"; }; }; + iagl = callPackage ../applications/video/kodi-packages/iagl { }; + libretro = callPackage ../applications/video/kodi-packages/libretro { }; + libretro-genplus = callPackage ../applications/video/kodi-packages/libretro-genplus { inherit genesis-plus-gx; }; + libretro-snes9x = callPackage ../applications/video/kodi-packages/libretro-snes9x { inherit snes9x; }; jellyfin = callPackage ../applications/video/kodi-packages/jellyfin { }; joystick = callPackage ../applications/video/kodi-packages/joystick { }; + keymap = callPackage ../applications/video/kodi-packages/keymap { }; + netflix = callPackage ../applications/video/kodi-packages/netflix { }; svtplay = callPackage ../applications/video/kodi-packages/svtplay { }; @@ -108,12 +114,16 @@ let self = rec { # addon packages (dependencies) + archive_tool = callPackage ../applications/video/kodi-packages/archive_tool { }; + certifi = callPackage ../applications/video/kodi-packages/certifi { }; chardet = callPackage ../applications/video/kodi-packages/chardet { }; dateutil = callPackage ../applications/video/kodi-packages/dateutil { }; + defusedxml = callPackage ../applications/video/kodi-packages/defusedxml { }; + idna = callPackage ../applications/video/kodi-packages/idna { }; inputstream-adaptive = callPackage ../applications/video/kodi-packages/inputstream-adaptive { }; diff --git a/pkgs/top-level/linux-kernels.nix b/pkgs/top-level/linux-kernels.nix index 14d809e6948f..8c97a418b295 100644 --- a/pkgs/top-level/linux-kernels.nix +++ b/pkgs/top-level/linux-kernels.nix @@ -189,7 +189,7 @@ in { }; linux_testing_bcachefs = callPackage ../os-specific/linux/kernel/linux-testing-bcachefs.nix rec { - kernel = linux_5_14; + kernel = linux_5_15; kernelPatches = kernel.kernelPatches; }; diff --git a/pkgs/top-level/metrics.nix b/pkgs/top-level/metrics.nix index c045439da1ab..1decb810f973 100644 --- a/pkgs/top-level/metrics.nix +++ b/pkgs/top-level/metrics.nix @@ -8,7 +8,8 @@ runCommand "nixpkgs-metrics" #requiredSystemFeatures = [ "benchmark" ]; # dedicated machine, by @vcunat last time } '' - export NIX_STATE_DIR=$TMPDIR + export NIX_STORE_DIR=$TMPDIR/store + export NIX_STATE_DIR=$TMPDIR/state export NIX_PAGER= nix-store --init diff --git a/pkgs/top-level/nim-packages.nix b/pkgs/top-level/nim-packages.nix index 5d45b0c5eca9..6c8c5ff7cc70 100644 --- a/pkgs/top-level/nim-packages.nix +++ b/pkgs/top-level/nim-packages.nix @@ -48,22 +48,41 @@ lib.makeScope newScope (self: pixie = callPackage ../development/nim-packages/pixie { }; + python = callPackage ../development/nim-packages/python { }; + redis = callPackage ../development/nim-packages/redis { }; redpool = callPackage ../development/nim-packages/redpool { }; regex = callPackage ../development/nim-packages/regex { }; + rocksdb = callPackage ../development/nim-packages/rocksdb { + inherit (pkgs) rocksdb; + }; + sass = callPackage ../development/nim-packages/sass { }; sdl2 = callPackage ../development/nim-packages/sdl2 { }; segmentation = callPackage ../development/nim-packages/segmentation { }; + snappy = + callPackage ../development/nim-packages/snappy { inherit (pkgs) snappy; }; + + spry = callPackage ../development/nim-packages/spry { }; + + spryvm = callPackage ../development/nim-packages/spryvm { }; + + stew = callPackage ../development/nim-packages/stew { }; + supersnappy = callPackage ../development/nim-packages/supersnappy { }; + tempfile = callPackage ../development/nim-packages/tempfile { }; + typography = callPackage ../development/nim-packages/typography { }; + ui = callPackage ../development/nim-packages/ui { inherit (pkgs) libui; }; + unicodedb = callPackage ../development/nim-packages/unicodedb { }; unicodeplus = callPackage ../development/nim-packages/unicodeplus { }; diff --git a/pkgs/top-level/nixpkgs-basic-release-checks.nix b/pkgs/top-level/nixpkgs-basic-release-checks.nix index 777cce7e5e0c..350dd273fe2e 100644 --- a/pkgs/top-level/nixpkgs-basic-release-checks.nix +++ b/pkgs/top-level/nixpkgs-basic-release-checks.nix @@ -3,7 +3,8 @@ pkgs.runCommand "nixpkgs-release-checks" { src = nixpkgs; buildInputs = [nix]; } '' set -o pipefail - export NIX_STATE_DIR=$TMPDIR + export NIX_STORE_DIR=$TMPDIR/store + export NIX_STATE_DIR=$TMPDIR/state export NIX_PATH=nixpkgs=$TMPDIR/barf.nix opts=(--option build-users-group "") nix-store --init diff --git a/pkgs/top-level/ocaml-packages.nix b/pkgs/top-level/ocaml-packages.nix index 87d6f4619bb7..74691f1df2d2 100644 --- a/pkgs/top-level/ocaml-packages.nix +++ b/pkgs/top-level/ocaml-packages.nix @@ -344,8 +344,8 @@ let then ppxlib.override { version = "0.15.0"; } else ppxlib; in { - ppx_deriving = ppx_deriving.override { ppxlib = ppxlib_0_15; }; - ppxlib = ppxlib_0_15; + ppx_deriving_0_15 = ppx_deriving.override { ppxlib = ppxlib_0_15; }; + inherit ppxlib_0_15; } ); @@ -1058,9 +1058,7 @@ let ppx_bap = callPackage ../development/ocaml-modules/ppx_bap { }; - ppx_bitstring = callPackage ../development/ocaml-modules/bitstring/ppx.nix { - ppxlib = ppxlib.override { version = "0.22.0"; }; - }; + ppx_bitstring = callPackage ../development/ocaml-modules/bitstring/ppx.nix { }; ppxfind = callPackage ../development/ocaml-modules/ppxfind { }; @@ -1152,9 +1150,7 @@ let ppx_cstruct = callPackage ../development/ocaml-modules/cstruct/ppx.nix { }; - ppx_cstubs = callPackage ../development/ocaml-modules/ppx_cstubs { - ppxlib = ppxlib.override { version = "0.22.0"; }; - }; + ppx_cstubs = callPackage ../development/ocaml-modules/ppx_cstubs { }; ppx_derivers = callPackage ../development/ocaml-modules/ppx_derivers {}; diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix index 534bef521ed3..b40caccc4978 100644 --- a/pkgs/top-level/perl-packages.nix +++ b/pkgs/top-level/perl-packages.nix @@ -3501,10 +3501,10 @@ let CompressRawBzip2 = buildPerlPackage { pname = "Compress-Raw-Bzip2"; - version = "2.096"; + version = "2.101"; src = fetchurl { - url = "mirror://cpan/authors/id/P/PM/PMQS/Compress-Raw-Bzip2-2.096.tar.gz"; - sha256 = "1glcjnbqksaviwyrprh9i4dybsb12kzfy0bx932l0xya9riyfr55"; + url = "mirror://cpan/authors/id/P/PM/PMQS/Compress-Raw-Bzip2-2.101.tar.gz"; + sha256 = "1n5q01akpsw1skn59c3nivwjfqcn00wzdj8gx4q0wac8sd7i76qc"; }; # Don't build a private copy of bzip2. @@ -3540,11 +3540,11 @@ let CompressRawZlib = buildPerlPackage { pname = "Compress-Raw-Zlib"; - version = "2.096"; + version = "2.101"; src = fetchurl { - url = "mirror://cpan/authors/id/P/PM/PMQS/Compress-Raw-Zlib-2.096.tar.gz"; - sha256 = "04jrqvqsa2c655idw7skv5rhb9vx9997h4n9if5p99srq4hblk6d"; + url = "mirror://cpan/authors/id/P/PM/PMQS/Compress-Raw-Zlib-2.101.tar.gz"; + sha256 = "1cmb39dw928jssa3fzk4pxb7sw8q1zyx3yikgq01nz17x0ara6wx"; }; preConfigure = '' @@ -5804,6 +5804,20 @@ let }; }; + DateTimeFormatRFC3339 = buildPerlPackage rec { + pname = "DateTime-Format-RFC3339"; + version = "1.2.0"; + src = fetchurl { + url = "mirror://cpan/authors/id/I/IK/IKEGAMI/DateTime-Format-RFC3339-v${version}.tar.gz"; + sha256 = "1xqdbbiksy6kapc3mv3ayjahmxxlzmb5x7rad4by1iii9hif2vhk"; + }; + propagatedBuildInputs = [ DateTime ]; + meta = { + description = "Parse and format RFC3339 datetime strings"; + license = lib.licenses.cc0; + }; + }; + DateTimeSet = buildPerlModule { pname = "DateTime-Set"; version = "0.3900"; @@ -9708,10 +9722,10 @@ let Gtk3ImageView = buildPerlPackage rec { pname = "Gtk3-ImageView"; - version = "9"; + version = "10"; src = fetchurl { url = "mirror://cpan/authors/id/A/AS/ASOKOLOV/Gtk3-ImageView-${version}.tar.gz"; - sha256 = "sha256-0dxe0p1UQglq+xok7g4l2clJ9WqOHxCeAzWD65E0H9w="; + sha256 = "sha256-vHfnBgaeZPK7hBgZcP1KjepG+IvsDE3XwrH9U4xoN+Y="; }; buildInputs = [ pkgs.gtk3 ]; propagatedBuildInputs = [ Readonly Gtk3 ]; @@ -10980,10 +10994,10 @@ let IOCompress = buildPerlPackage { pname = "IO-Compress"; - version = "2.096"; + version = "2.102"; src = fetchurl { - url = "mirror://cpan/authors/id/P/PM/PMQS/IO-Compress-2.096.tar.gz"; - sha256 = "9d219fd5df4b490b5d2f847921e3cb1c3392758fa0bae9b05a8992b3620ba572"; + url = "mirror://cpan/authors/id/P/PM/PMQS/IO-Compress-2.102.tar.gz"; + sha256 = "193jvi4800cbcac5n1swj9zgwwqck9c47g0g592ldr7fbfd7zynn"; }; propagatedBuildInputs = [ CompressRawBzip2 CompressRawZlib ]; meta = { @@ -20610,12 +20624,12 @@ let SysVirt = buildPerlModule rec { pname = "Sys-Virt"; - version = "7.8.0"; + version = "7.9.0"; src = fetchFromGitLab { owner = "libvirt"; repo = "libvirt-perl"; - rev = "v7.8.0"; - sha256 = "sha256-D/sVIKMWy3WnDM97+ofG3ClgGhJJuK2a6NJLC03S4LI="; + rev = "v7.9.0"; + sha256 = "sha256-QxY6TRVQWrN689CD76CQZeyXsDVWxk24N1v67DCvmDo="; }; nativeBuildInputs = [ pkgs.pkg-config ]; buildInputs = [ pkgs.libvirt CPANChanges TestPod TestPodCoverage XMLXPath ]; @@ -24686,7 +24700,8 @@ let sha256 = "068nhmld1031grgi4qm7k5niwxlbn6qd08zf6g1gj4c7qfas62q1"; }; SKIP_SAX_INSTALL = 1; - buildInputs = [ AlienBuild AlienLibxml2 ]; + buildInputs = [ AlienBuild AlienLibxml2 ] + ++ lib.optional stdenv.isDarwin pkgs.libiconv; propagatedBuildInputs = [ XMLSAX ]; }; diff --git a/pkgs/top-level/python-aliases.nix b/pkgs/top-level/python-aliases.nix index a6b9ac968431..3b7be354942f 100644 --- a/pkgs/top-level/python-aliases.nix +++ b/pkgs/top-level/python-aliases.nix @@ -55,6 +55,7 @@ mapAliases ({ googleapis_common_protos = googleapis-common-protos; # added 2021-03-19 grpc_google_iam_v1 = grpc-google-iam-v1; # added 2021-08-21 HAP-python = hap-python; # added 2021-06-01 + hbmqtt = throw "hbmqtt was removed because it is no longer maintained"; # added 2021-11-07 IMAPClient = imapclient; # added 2021-10-28 jupyter_client = jupyter-client; # added 2021-10-15 lammps-cython = throw "lammps-cython no longer builds and is unmaintained"; # added 2021-07-04 @@ -65,6 +66,7 @@ mapAliases ({ privacyidea = throw "privacyidea has been renamed to pkgs.privacyidea"; # added 2021-06-20 prometheus_client = prometheus-client; # added 2021-06-10 prompt_toolkit = prompt-toolkit; # added 2021-07-22 + pur = throw "pur has been renamed to pkgs.pur"; # added 2021-11-08 pylibgen = throw "pylibgen is unmaintained upstreamed, and removed from nixpkgs"; # added 2020-06-20 pymssql = throw "pymssql has been abandoned upstream."; # added 2020-05-04 pysmart-smartx = pysmart; # added 2021-10-22 diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix index 15ffe1f9f344..c63a35749259 100644 --- a/pkgs/top-level/python-packages.nix +++ b/pkgs/top-level/python-packages.nix @@ -409,6 +409,8 @@ in { airthings-cloud = callPackage ../development/python-modules/airthings-cloud { }; + airtouch4pyapi = callPackage ../development/python-modules/airtouch4pyapi { }; + ajpy = callPackage ../development/python-modules/ajpy { }; ajsonrpc = callPackage ../development/python-modules/ajsonrpc { }; @@ -1705,6 +1707,8 @@ in { confuse = callPackage ../development/python-modules/confuse { }; + confight = callPackage ../development/python-modules/confight { }; + connexion = callPackage ../development/python-modules/connexion { }; consonance = callPackage ../development/python-modules/consonance { }; @@ -2265,6 +2269,8 @@ in { docloud = callPackage ../development/python-modules/docloud { }; + docstring-to-markdown = callPackage ../development/python-modules/docstring-to-markdown { }; + docopt = callPackage ../development/python-modules/docopt { }; docopt-ng = callPackage ../development/python-modules/docopt-ng { }; @@ -2717,6 +2723,8 @@ in { flake8 = callPackage ../development/python-modules/flake8 { }; + flake8-length = callPackage ../development/python-modules/flake8-length { }; + flake8-debugger = callPackage ../development/python-modules/flake8-debugger { }; flake8-future-import = callPackage ../development/python-modules/flake8-future-import { }; @@ -2962,6 +2970,8 @@ in { pythonPackages = self; }); + gaphas = callPackage ../development/python-modules/gaphas { }; + garminconnect-aio = callPackage ../development/python-modules/garminconnect-aio { }; garminconnect-ha = callPackage ../development/python-modules/garminconnect-ha { }; @@ -3000,6 +3010,8 @@ in { genanki = callPackage ../development/python-modules/genanki { }; + generic = callPackage ../development/python-modules/generic { }; + genome-collector = callPackage ../development/python-modules/genome-collector { }; genpy = callPackage ../development/python-modules/genpy { }; @@ -3426,6 +3438,8 @@ in { hdate = callPackage ../development/python-modules/hdate { }; + ha-av = callPackage ../development/python-modules/ha-av { }; + ha-ffmpeg = callPackage ../development/python-modules/ha-ffmpeg { }; ha-philipsjs = callPackage ../development/python-modules/ha-philipsjs{ }; @@ -3446,8 +3460,6 @@ in { hawkauthlib = callPackage ../development/python-modules/hawkauthlib { }; - hbmqtt = callPackage ../development/python-modules/hbmqtt { }; - hcloud = callPackage ../development/python-modules/hcloud { }; hcs_utils = callPackage ../development/python-modules/hcs_utils { }; @@ -3770,6 +3782,8 @@ in { inkex = callPackage ../development/python-modules/inkex { }; + inotify = callPackage ../development/python-modules/inotify { }; + inotify-simple = callPackage ../development/python-modules/inotify-simple { }; inotifyrecursive = callPackage ../development/python-modules/inotifyrecursive { }; @@ -3921,6 +3935,8 @@ in { jedi = callPackage ../development/python-modules/jedi { }; + jedi-language-server = callPackage ../development/python-modules/jedi-language-server { }; + jeepney = callPackage ../development/python-modules/jeepney { }; jellyfin-apiclient-python = callPackage ../development/python-modules/jellyfin-apiclient-python { }; @@ -4573,6 +4589,10 @@ in { manhole = callPackage ../development/python-modules/manhole { }; + manimpango = callPackage ../development/python-modules/manimpango { + inherit (pkgs.darwin.apple_sdk.frameworks) AppKit; + }; + manifestparser = callPackage ../development/python-modules/marionette-harness/manifestparser.nix { }; manuel = callPackage ../development/python-modules/manuel { }; @@ -4625,7 +4645,7 @@ in { mathlibtools = callPackage ../development/python-modules/mathlibtools { }; - matplotlib = callPackage ../development/python-modules/matplotlib/default.nix { + matplotlib = callPackage ../development/python-modules/matplotlib { stdenv = if stdenv.isDarwin then pkgs.clangStdenv else pkgs.stdenv; inherit (pkgs.darwin.apple_sdk.frameworks) Cocoa; }; @@ -4736,6 +4756,8 @@ in { milksnake = callPackage ../development/python-modules/milksnake { }; + mill-local = callPackage ../development/python-modules/mill-local { }; + millheater = callPackage ../development/python-modules/millheater { }; miniaudio = callPackage ../development/python-modules/miniaudio { }; @@ -4870,6 +4892,8 @@ in { mpyq = callPackage ../development/python-modules/mpyq { }; + mrkd = callPackage ../development/python-modules/mrkd { }; + ms-cv = callPackage ../development/python-modules/ms-cv { }; msal = callPackage ../development/python-modules/msal { }; @@ -5295,7 +5319,7 @@ in { openrazer-daemon = callPackage ../development/python-modules/openrazer/daemon.nix { }; - openrouteservice = callPackage ../development/python-modules/openrouteservice/default.nix { }; + openrouteservice = callPackage ../development/python-modules/openrouteservice { }; opensensemap-api = callPackage ../development/python-modules/opensensemap-api { }; @@ -5412,6 +5436,8 @@ in { pamqp = callPackage ../development/python-modules/pamqp { }; + panacotta = callPackage ../development/python-modules/panacotta { }; + pandas = callPackage ../development/python-modules/pandas { }; pandas-datareader = callPackage ../development/python-modules/pandas-datareader { }; @@ -5506,7 +5532,7 @@ in { pathvalidate = callPackage ../development/python-modules/pathvalidate { }; - pathy = callPackage ../development/python-modules/pathy/default.nix { }; + pathy = callPackage ../development/python-modules/pathy { }; patiencediff = callPackage ../development/python-modules/patiencediff { }; @@ -5666,10 +5692,7 @@ in { pipdate = callPackage ../development/python-modules/pipdate { }; - pip-tools = callPackage ../development/python-modules/pip-tools { - git = pkgs.gitMinimal; - inherit (pkgs) glibcLocales; - }; + pip-tools = callPackage ../development/python-modules/pip-tools { }; pipx = callPackage ../development/python-modules/pipx { }; @@ -6034,8 +6057,6 @@ in { pulsectl = callPackage ../development/python-modules/pulsectl { }; - pur = callPackage ../development/python-modules/pur { }; - pure-cdb = callPackage ../development/python-modules/pure-cdb { }; pure-eval = callPackage ../development/python-modules/pure-eval { }; @@ -6140,6 +6161,8 @@ in { pyaxmlparser = callPackage ../development/python-modules/pyaxmlparser { }; + pybalboa = callPackage ../development/python-modules/pybalboa { }; + pybase64 = callPackage ../development/python-modules/pybase64 { }; pybids = callPackage ../development/python-modules/pybids { }; @@ -6414,7 +6437,7 @@ in { pygal = callPackage ../development/python-modules/pygal { }; pygame = callPackage ../development/python-modules/pygame { - inherit (pkgs.darwin.apple_sdk.frameworks) AppKit CoreMIDI; + inherit (pkgs.darwin.apple_sdk.frameworks) AppKit; }; pygame_sdl2 = callPackage ../development/python-modules/pygame_sdl2 { }; @@ -6559,6 +6582,8 @@ in { pylatexenc = callPackage ../development/python-modules/pylatexenc { }; + pylaunches = callPackage ../development/python-modules/pylaunches { }; + PyLD = callPackage ../development/python-modules/PyLD { }; pylev = callPackage ../development/python-modules/pylev { }; @@ -6627,6 +6652,8 @@ in { pymanopt = callPackage ../development/python-modules/pymanopt { }; + pymarshal = callPackage ../development/python-modules/pymarshal { }; + pymata-express = callPackage ../development/python-modules/pymata-express { }; pymatgen = callPackage ../development/python-modules/pymatgen { }; @@ -6942,7 +6969,7 @@ in { pyRFC3339 = callPackage ../development/python-modules/pyrfc3339 { }; - PyRMVtransport = callPackage ../development/python-modules/PyRMVtransport { }; + pyrmvtransport = callPackage ../development/python-modules/pyrmvtransport { }; Pyro4 = callPackage ../development/python-modules/pyro4 { }; @@ -7258,6 +7285,8 @@ in { pytest-doctestplus = callPackage ../development/python-modules/pytest-doctestplus { }; + pytest-dotenv = callPackage ../development/python-modules/pytest-dotenv { }; + pytest-env = callPackage ../development/python-modules/pytest-env { }; pytest-error-for-skips = callPackage ../development/python-modules/pytest-error-for-skips { }; @@ -7485,6 +7514,7 @@ in { }; pythonix = callPackage ../development/python-modules/pythonix { + nix = pkgs.nix_2_3; meson = pkgs.meson.override { python3 = self.python; }; }; @@ -7710,6 +7740,8 @@ in { cudaSupport = false; }; + pytraccar = callPackage ../development/python-modules/pytraccar { }; + pytradfri = callPackage ../development/python-modules/pytradfri { }; pytrafikverket = callPackage ../development/python-modules/pytrafikverket { }; @@ -7759,6 +7791,8 @@ in { pyupgrade = callPackage ../development/python-modules/pyupgrade { }; + pyuptimerobot = callPackage ../development/python-modules/pyuptimerobot { }; + pyusb = callPackage ../development/python-modules/pyusb { inherit (pkgs) libusb1; }; @@ -7813,6 +7847,8 @@ in { pywavelets = callPackage ../development/python-modules/pywavelets { }; + pywayland = callPackage ../development/python-modules/pywayland { }; + pywbem = callPackage ../development/python-modules/pywbem { inherit (pkgs) libxml2; }; @@ -7831,6 +7867,8 @@ in { pywizlight = callPackage ../development/python-modules/pywizlight { }; + pywlroots = callPackage ../development/python-modules/pywlroots { }; + pyxattr = callPackage ../development/python-modules/pyxattr { }; pyworld = callPackage ../development/python-modules/pyworld { }; @@ -7877,16 +7915,24 @@ in { qimage2ndarray = callPackage ../development/python-modules/qimage2ndarray { }; + qiskit = callPackage ../development/python-modules/qiskit { }; + qiskit-aer = callPackage ../development/python-modules/qiskit-aer { }; qiskit-aqua = callPackage ../development/python-modules/qiskit-aqua { }; - qiskit = callPackage ../development/python-modules/qiskit { }; + qiskit-finance = callPackage ../development/python-modules/qiskit-finance { }; qiskit-ibmq-provider = callPackage ../development/python-modules/qiskit-ibmq-provider { }; qiskit-ignis = callPackage ../development/python-modules/qiskit-ignis { }; + qiskit-machine-learning = callPackage ../development/python-modules/qiskit-machine-learning { }; + + qiskit-nature = callPackage ../development/python-modules/qiskit-nature { }; + + qiskit-optimization = callPackage ../development/python-modules/qiskit-optimization { }; + qiskit-terra = callPackage ../development/python-modules/qiskit-terra { }; qrcode = callPackage ../development/python-modules/qrcode { }; @@ -8520,7 +8566,7 @@ in { simplekml = callPackage ../development/python-modules/simplekml { }; - simple_di = callPackage ../development/python-modules/simple_di { }; + simple-di = callPackage ../development/python-modules/simple-di { }; simple-rest-client = callPackage ../development/python-modules/simple-rest-client { }; @@ -8534,7 +8580,7 @@ in { signify = callPackage ../development/python-modules/signify { }; - sip = callPackage ../development/python-modules/sip/default.nix { }; + sip = callPackage ../development/python-modules/sip { }; sip_4 = callPackage ../development/python-modules/sip/4.x.nix { }; @@ -8882,6 +8928,8 @@ in { starline = callPackage ../development/python-modules/starline { }; + stashy = callPackage ../development/python-modules/stashy { }; + staticjinja = callPackage ../development/python-modules/staticjinja { }; statistics = callPackage ../development/python-modules/statistics { }; @@ -9461,6 +9509,10 @@ in { types-requests = callPackage ../development/python-modules/types-requests { }; + types-setuptools = callPackage ../development/python-modules/types-setuptools { }; + + types-toml = callPackage ../development/python-modules/types-toml { }; + typesentry = callPackage ../development/python-modules/typesentry { }; typesystem = callPackage ../development/python-modules/typesystem { }; @@ -9765,8 +9817,12 @@ in { waterfurnace = callPackage ../development/python-modules/waterfurnace { }; + watermark = callPackage ../development/python-modules/watermark { }; + wavedrom = callPackage ../development/python-modules/wavedrom { }; + wavefile = callPackage ../development/python-modules/wavefile { }; + wazeroutecalculator = callPackage ../development/python-modules/wazeroutecalculator { }; wcmatch = callPackage ../development/python-modules/wcmatch { }; @@ -9952,6 +10008,8 @@ in { xhtml2pdf = callPackage ../development/python-modules/xhtml2pdf { }; + xkbcommon = callPackage ../development/python-modules/xkbcommon { }; + xkcdpass = callPackage ../development/python-modules/xkcdpass { }; xknx = callPackage ../development/python-modules/xknx { }; diff --git a/pkgs/top-level/python2-packages.nix b/pkgs/top-level/python2-packages.nix index 927827b66e50..48bdc1985a5d 100644 --- a/pkgs/top-level/python2-packages.nix +++ b/pkgs/top-level/python2-packages.nix @@ -110,6 +110,8 @@ with self; with super; { feedparser = callPackage ../development/python-modules/feedparser/5.nix { }; + filelock = callPackage ../development/python-modules/filelock/3.2.nix { }; + flask = callPackage ../development/python-modules/flask/1.nix { }; flask_ldap_login = callPackage ../development/python-modules/flask-ldap-login { }; @@ -413,6 +415,11 @@ with self; with super; { prompt-toolkit = callPackage ../development/python-modules/prompt-toolkit/1.nix { }; + protobuf = callPackage ../development/python-modules/protobuf { + disabled = isPyPy; + protobuf = pkgs.protobuf3_17; # last version compatible with Python 2 + }; + pyamf = callPackage ../development/python-modules/pyamf { }; pyblosxom = callPackage ../development/python-modules/pyblosxom { }; diff --git a/pkgs/top-level/qt5-packages.nix b/pkgs/top-level/qt5-packages.nix index bc3f5524e6aa..c80462d9d1ed 100644 --- a/pkgs/top-level/qt5-packages.nix +++ b/pkgs/top-level/qt5-packages.nix @@ -136,6 +136,8 @@ in (kdeFrameworks // plasmaMobileGear // plasma5 // plasma5.thirdParty // kdeGea libqtav = callPackage ../development/libraries/libqtav { }; + libqaccessibilityclient = callPackage ../development/libraries/libqaccessibilityclient { }; + kpmcore = callPackage ../development/libraries/kpmcore { }; mapbox-gl-native = libsForQt5.callPackage ../development/libraries/mapbox-gl-native { }; diff --git a/pkgs/top-level/release-haskell.nix b/pkgs/top-level/release-haskell.nix index 11dad3dd3a39..f6e34e7084b7 100644 --- a/pkgs/top-level/release-haskell.nix +++ b/pkgs/top-level/release-haskell.nix @@ -182,7 +182,7 @@ let hledger-web hlint hpack - hyper-haskell + # hyper-haskell # depends on electron-10.4.7 which is marked as insecure hyper-haskell-server-with-packages icepeak idris diff --git a/pkgs/top-level/release-r.nix b/pkgs/top-level/release-r.nix index d31e9ced22d5..4c715a7786d6 100644 --- a/pkgs/top-level/release-r.nix +++ b/pkgs/top-level/release-r.nix @@ -4,7 +4,7 @@ $ hydra-eval-jobs -I . pkgs/top-level/release-r.nix */ -{ supportedSystems ? [ "x86_64-linux" "x86_64-darwin" "aarch64-linux" ] }: +{ supportedSystems ? [ "x86_64-linux" "aarch64-linux" ] }: with import ./release-lib.nix { inherit supportedSystems; }; diff --git a/pkgs/top-level/stage.nix b/pkgs/top-level/stage.nix index 7db79276d899..9d34ddb3685f 100644 --- a/pkgs/top-level/stage.nix +++ b/pkgs/top-level/stage.nix @@ -76,8 +76,10 @@ let trivialBuilders = self: super: import ../build-support/trivial-builders.nix { - inherit lib; inherit (self) stdenv stdenvNoCC; inherit (self.pkgsBuildHost.xorg) lndir; - inherit (self) runtimeShell; + inherit lib; + inherit (self) runtimeShell stdenv stdenvNoCC; + inherit (self.pkgsBuildHost) shellcheck; + inherit (self.pkgsBuildHost.xorg) lndir; }; stdenvBootstappingAndPlatforms = self: super: let diff --git a/pkgs/top-level/wine-packages.nix b/pkgs/top-level/wine-packages.nix index b26bc361cf5e..fff2d73110c3 100644 --- a/pkgs/top-level/wine-packages.nix +++ b/pkgs/top-level/wine-packages.nix @@ -51,6 +51,11 @@ rec { }; stable = base.override { wineRelease = "stable"; }; + stableFull = full.override { wineRelease = "stable"; }; + unstable = base.override { wineRelease = "unstable"; }; + unstableFull = full.override { wineRelease = "unstable"; }; + staging = base.override { wineRelease = "staging"; }; + stagingFull = full.override { wineRelease = "staging"; }; }