2021-01-11 07:54:33 +00:00
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{ lib, stdenv, fetchurl, hmmer, perl }:
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2019-03-26 10:52:26 +00:00
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stdenv.mkDerivation rec {
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version = "1.1.1";
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2019-08-15 12:41:18 +00:00
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pname = "itsx";
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2019-03-26 10:52:26 +00:00
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src = fetchurl {
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url = "http://microbiology.se/sw/ITSx_${version}.tar.gz";
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sha256 = "0lrmy2n3ax7f208k0k8l3yz0j5cpz05hv4hx1nnxzn0c51z1pc31";
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};
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buildInputs = [ hmmer perl ];
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buildPhase = ''
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sed -e "s,profileDB = .*,profileDB = \"$out/share/ITSx_db/HMMs\";," -i ITSx
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sed "3 a \$ENV{\'PATH\'}='${hmmer}/bin:'.\"\$ENV{\'PATH\'}\";" -i ITSx
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mkdir bin
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mv ITSx bin
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'';
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installPhase = ''
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mkdir -p $out/share/doc && cp -a bin $out/
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cp *pdf $out/share/doc
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cp -r ITSx_db $out/share
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'';
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2021-01-11 07:54:33 +00:00
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meta = with lib; {
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2019-03-26 10:52:26 +00:00
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description = "Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for use in environmental sequencing";
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2020-04-01 01:11:51 +00:00
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homepage = "https://microbiology.se/software/itsx/";
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2019-03-26 10:52:26 +00:00
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license = licenses.gpl3;
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maintainers = [ maintainers.bzizou ];
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2020-07-28 18:48:55 +00:00
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platforms = platforms.unix;
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2019-03-26 10:52:26 +00:00
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};
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}
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