Directly fail if a flakeref points to something that isn't a directory
instead of falling back to the logic of trying to look up the hierarchy
to find a valid flake root.
Fix https://github.com/NixOS/nix/issues/9868
I think it is bad for these reasons when `tests/` contains a mix of
functional and integration tests
- Concepts is harder to understand, the documentation makes a good
unit vs functional vs integration distinction, but when the
integration tests are just two subdirs within `tests/` this is not
clear.
- Source filtering in the `flake.nix` is more complex. We need to
filter out some of the dirs from `tests/`, rather than simply pick
the dirs we want and take all of them. This is a good sign the
structure of what we are trying to do is not matching the structure
of the files.
With this change we have a clean:
```shell-session
$ git show 'HEAD:tests'
tree HEAD:tests
functional/
installer/
nixos/
```
