mirror of
https://github.com/PAMGuard/PAMGuard.git
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da387005a3
* Updates to click train detector New GUI for click train classification - more intuitive and allows users to build more powerful classifiers. CPOD data can now build average waveforms. CPOD click trains can be viewed in TDisplayFX pop up menu displays Fixed Peak Frequency symbol chooser so it saves the colour box settings * Create click_train_help.md * Update click_train_help.md * Screenshots * Update click_train_help.md * Update click_train_help.md * Update click_train_help.md * More screenshots * Add screenshots * Update click_train_help.md * Add classifier screenshot * Update click_train_help.md * Update click_train_help.md * Update click_train_help.md * Updates and bug fixes to click train detector and CPOD importer * Update click_train_help.md * Update POM with latest jdl4pam * Add screenshots for click train detector help * Screenshots * Update click_train_help.md * Defult option for CPOD and porpoise to click train detector. Also a minor * Update pom.xml * Bug fix for raw spectrogram in TDDisplayFX * Update KetosClassifier.java * Updates to click train detector New GUI for click train classification - more intuitive and allows users to build more powerful classifiers. CPOD data can now build average waveforms. CPOD click trains can be viewed in TDisplayFX pop up menu displays Fixed Peak Frequency symbol chooser so it saves the colour box settings * Create click_train_help.md * Update click_train_help.md * Screenshots * Update click_train_help.md * More screenshots * Update click_train_help.md * Update click_train_help.md * Add screenshots * Add classifier screenshot * Update click_train_help.md * Updates and bug fixes to click train detector and CPOD importer * Update click_train_help.md * Update click_train_help.md * Update click_train_help.md * Update click_train_help.md * Add screenshots for click train detector help * Screenshots * Update click_train_help.md * Defult option for CPOD and porpoise to click train detector. Also a minor * Bug fix for raw spectrogram in TDDisplayFX * Update KetosClassifier.java * Fix standard classifier JSON logging * Update click_train_help.md * Fixed bug in sweep classifier when using SoundTrap click detections * Added some colour averaging in the TFDisplayFX spectrgoram * Bug fix for rainbow click bearings Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup * Google humpback whale deep learning classifier Google's humpback whale deep learning classifier can now be imported. Updated TDisplayFX to make the data selection panes cleaner and clearer. Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour. * Updated the prediction plots on time display Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend. * Updates to TDisplayFX yFIshmael now owrks with TDisplayFX TDisplayFX UI changes to make simpler. Some abstraction for drawing lines on TDisplayFX * Updates to click train detector New GUI for click train classification - more intuitive and allows users to build more powerful classifiers. CPOD data can now build average waveforms. CPOD click trains can be viewed in TDisplayFX pop up menu displays Fixed Peak Frequency symbol chooser so it saves the colour box settings * Create click_train_help.md * Update click_train_help.md * Screenshots * Update click_train_help.md * More screenshots * Update click_train_help.md * Update click_train_help.md * Add screenshots * Add classifier screenshot * Update click_train_help.md * Updates and bug fixes to click train detector and CPOD importer * Update click_train_help.md * Update click_train_help.md * Update click_train_help.md * Update click_train_help.md * Add screenshots for click train detector help * Screenshots * Update click_train_help.md * Defult option for CPOD and porpoise to click train detector. Also a minor * Updates to click train detector New GUI for click train classification - more intuitive and allows users to build more powerful classifiers. CPOD data can now build average waveforms. CPOD click trains can be viewed in TDisplayFX pop up menu displays Fixed Peak Frequency symbol chooser so it saves the colour box settings * Create click_train_help.md * Update click_train_help.md * Update click_train_help.md * Updates and bug fixes to click train detector and CPOD importer * Bug fix for raw spectrogram in TDDisplayFX * Update KetosClassifier.java * Fix standard classifier JSON logging * Fixed bug in sweep classifier when using SoundTrap click detections * Added some colour averaging in the TFDisplayFX spectrgoram * Bug fix for rainbow click bearings Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup * Google humpback whale deep learning classifier Google's humpback whale deep learning classifier can now be imported. Updated TDisplayFX to make the data selection panes cleaner and clearer. Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour. * Updated the prediction plots on time display Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend. * Updates to TDisplayFX yFIshmael now owrks with TDisplayFX TDisplayFX UI changes to make simpler. Some abstraction for drawing lines on TDisplayFX * Merge fixes to click train detector * Bug fix to UI
831 lines
28 KiB
XML
831 lines
28 KiB
XML
<project xmlns="http://maven.apache.org/POM/4.0.0"
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xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
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xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
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<modelVersion>4.0.0</modelVersion>
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<groupId>org.pamguard</groupId>
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<artifactId>Pamguard</artifactId>
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<version>2.02.03</version>
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<name>Pamguard Java12+</name>
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<description>Pamguard for Java 12+, using Maven to control dependcies</description>
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<url>www.pamguard.org</url>
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<organization>
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<name>Sea Mammal Research Unit, University of St. Andrews</name>
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<url>http://www.smru.st-andrews.ac.uk</url>
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</organization>
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<properties>
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<javafx.version>16</javafx.version>
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<maven.compiler.source>11</maven.compiler.source>
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<maven.compiler.target>11</maven.compiler.target>
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</properties>
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<build>
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<sourceDirectory>src</sourceDirectory>
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<resources>
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<resource>
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<directory>src</directory>
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<excludes>
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<exclude>**/*.java</exclude> <!-- don't include any source files -->
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<exclude>jars/*.*</exclude> <!-- don't include files in the jars folder -->
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</excludes>
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</resource>
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</resources>
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<plugins>
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<plugin>
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<!-- original maven compiler definition - uses the JRE's javac compiler, not the one Eclipse uses
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<artifactId>maven-compiler-plugin</artifactId>
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<version>3.8.0</version>
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<configuration>
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<release>13</release>
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</configuration>
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-->
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<!-- attempt to use the Eclipse JDT compiler, so that the errors match when building
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https://stackoverflow.com/questions/38070326/java-generics-compiler-error-not-shown-in-eclipse
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https://wiki.eclipse.org/JDT/FAQ#Can_I_use_JDT_outside_Eclipse_to_compile_Java_code.3F
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https://wiki.eclipse.org/Tycho/FAQ#Can_I_use_the_Tycho_compiler_support_in_non-OSGi_projects.2C_too.3F
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-->
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<groupId>org.apache.maven.plugins</groupId>
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<artifactId>maven-compiler-plugin</artifactId>
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<version>3.8.1</version>
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<configuration>
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<!-- set compiler to use Java version 11 API https://docs.oracle.com/javase/9/tools/javac.htm#JSWOR627 -->
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<release>11</release>
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<compilerId>jdt</compilerId>
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<compilerArguments>
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<properties>.settings/org.eclipse.jdt.core.prefs</properties> <!-- make sure to use same params as what Eclipse uses -->
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</compilerArguments>
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</configuration>
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<dependencies>
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<!-- https://mvnrepository.com/artifact/org.eclipse.tycho/tycho-compiler-jdt -->
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<dependency>
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<groupId>org.eclipse.tycho</groupId>
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<artifactId>tycho-compiler-jdt</artifactId>
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<version>1.5.1</version>
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</dependency>
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</dependencies>
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</plugin>
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<plugin>
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<groupId>org.openjfx</groupId>
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<artifactId>javafx-maven-plugin</artifactId>
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<version>0.0.6</version>
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<configuration>
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<source>16</source>
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<target>16</target>
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<release>16</release>
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</configuration>
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</plugin>
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<!-- Maven Shade plugin - for creating the uberjar / fatjar -->
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<!-- see http://maven.apache.org/plugins/maven-shade-plugin/index.html for details -->
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<plugin>
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<groupId>org.apache.maven.plugins</groupId>
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<artifactId>maven-shade-plugin</artifactId>
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<version>3.2.1</version>
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<configuration>
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<transformers>
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<transformer
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implementation="org.apache.maven.plugins.shade.resource.ServicesResourceTransformer" />
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</transformers>
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</configuration>
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<executions>
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<execution>
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<phase>package</phase>
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<goals>
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<goal>shade</goal>
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</goals>
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<configuration>
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<transformers>
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<transformer implementation="org.apache.maven.plugins.shade.resource.ManifestResourceTransformer">
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<manifestEntries>
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<Main-Class>pamguard.Pamguard</Main-Class>
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<Class-Path>.</Class-Path> <!-- this is from the orig ant build file -->
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<SplashScreen-Image>Resources/pgBlankSplash.png</SplashScreen-Image> <!-- this is from the orig ant build file -->
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</manifestEntries>
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</transformer>
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<transformer implementation="org.apache.maven.plugins.shade.resource.ServicesResourceTransformer" />
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</transformers>
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<filters>
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<filter>
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<artifact>*:*</artifact>
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<excludes>
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<exclude>META-INF/*.SF</exclude> <!-- get rid of manifests from library jars - also done in orig ant build file -->
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<exclude>META-INF/*.DSA</exclude>
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<exclude>META-INF/*.RSA</exclude>
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</excludes>
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</filter>
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</filters>
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</configuration>
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</execution>
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</executions>
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</plugin>
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<!-- The Maven-JDEPS plugin, to analyze necessary JDK dependencies. See
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this site for details: https://maven.apache.org/plugins/maven-jdeps-plugin/index.html -->
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<plugin>
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<groupId>com.github.marschall</groupId>
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<artifactId>jdeps-maven-plugin</artifactId>
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<version>0.5.1</version>
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</plugin>
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<!-- The Maven dependency plugin, which can copy all dependencies into a temp folder for jdeps analysis -->
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<plugin>
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<groupId>org.apache.maven.plugins</groupId>
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<artifactId>maven-dependency-plugin</artifactId>
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<version>3.1.1</version>
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<executions>
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<execution>
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<id>copy-dependencies</id>
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<phase>package</phase>
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<goals>
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<goal>copy-dependencies</goal>
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</goals>
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<configuration>
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<outputDirectory>${project.build.directory}/tempDependencies</outputDirectory>
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<overWriteReleases>false</overWriteReleases>
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<overWriteSnapshots>false</overWriteSnapshots>
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<overWriteIfNewer>true</overWriteIfNewer>
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</configuration>
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</execution>
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<!-- this deletes all the dependencies in the local repository and downloads them again.
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Run a Maven > Update after doing this in order to properly reset the dependencies. Also, you
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will need to add the 3 jar files (x3, JasioHost and jave) back into the local repository after
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running this command -->
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<!-- I'm not sure why, but every time I try to run the shade:shade build to create a
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fatjar it first runs this, which deletes all of the dependencies and completely fails.
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I think it has something to do with the lifecycle mapping, but that's beyond my Maven
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abilities right now.
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I can't even remember why I added this in the first place, so I'm going to comment
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it out
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<execution>
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<id>purge-local-dependencies</id>
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<phase>process-sources</phase>
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<goals>
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<goal>purge-local-repository</goal>
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</goals>
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<configuration>
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</configuration>
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</execution>
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-->
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</executions>
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</plugin>
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</plugins>
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<pluginManagement>
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<plugins>
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<!--This plugin's configuration is used to store Eclipse m2e settings only. It has no influence on the Maven build itself.-->
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<plugin>
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<groupId>org.eclipse.m2e</groupId>
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<artifactId>lifecycle-mapping</artifactId>
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<version>1.0.0</version>
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<configuration>
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<lifecycleMappingMetadata>
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<pluginExecutions>
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<pluginExecution>
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<pluginExecutionFilter>
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<groupId>
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org.apache.maven.plugins
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</groupId>
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<artifactId>
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maven-dependency-plugin
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</artifactId>
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<versionRange>
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[3.1.1,)
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</versionRange>
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<goals>
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<goal>
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purge-local-repository
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</goal>
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</goals>
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</pluginExecutionFilter>
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<action>
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<ignore></ignore>
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</action>
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</pluginExecution>
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</pluginExecutions>
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</lifecycleMappingMetadata>
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</configuration>
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</plugin>
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</plugins>
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</pluginManagement>
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</build>
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<reporting>
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<plugins>
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<plugin>
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<groupId>com.github.marschall</groupId>
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<artifactId>jdeps-maven-plugin</artifactId>
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<version>0.5.1</version>
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</plugin>
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</plugins>
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</reporting>
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<!-- ************************* Extra Repositories ************************************* -->
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<repositories>
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<!-- Project repo to hold the custom jar files that are not available in Maven. Do
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this so that we don't have to do the extra step of manually installing jar files in the local repo -->
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<repository>
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<id>repo</id>
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<releases>
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<enabled>true</enabled>
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<checksumPolicy>ignore</checksumPolicy>
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</releases>
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<snapshots>
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<enabled>false</enabled>
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</snapshots>
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<url>file://${project.basedir}/repo</url>
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</repository>
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<!-- Repo for Jamie's code -->
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<!-- IMPORTANT: SOMEHOW THIS REPO INTERFERES WITH THE
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JAVAFX DEPENDENCIES. Don't understand how, but it
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does. If Maven is not downloading the JavaFX dependencies
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and is instead throwing errors, try commenting out this
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repository. Let Maven download the JavaFX files, and
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then uncomment this repo again.
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Same thing seems to be occurring if I try to update the postgresql library. -->
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<!-- <repository> -->
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<!-- <snapshots> -->
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<!-- <enabled>false</enabled> -->
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<!-- </snapshots> -->
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<!-- <id>central</id> -->
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<!-- <name>a0u0ltozdsehx-artifactory-primary-0-releases</name> -->
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<!-- <url>https://jmachund.jfrog.io/artifactory/jpam2</url> -->
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<!-- </repository> -->
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<!-- Repo for netCDF -->
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<repository>
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<snapshots>
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<enabled>false</enabled>
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</snapshots>
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<id>unidata-all</id>
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<name>Unidata netCDF</name>
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<url>https://artifacts.unidata.ucar.edu/repository/unidata-all/</url>
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</repository>
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<!-- -->
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<repository>
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<snapshots>
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<enabled>false</enabled>
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</snapshots>
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<id>geomajas</id>
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<name>geomajas</name>
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<url>http://maven.geomajas.org/</url>
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</repository>
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<!-- Repo for Renjin Script Engine -->
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<repository>
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<snapshots>
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<enabled>false</enabled>
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</snapshots>
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<id>bedatadriven</id>
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<name>bedatadriven_renjin</name>
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<url>https://nexus.bedatadriven.com/content/groups/public/</url>
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</repository>
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<repository>
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<snapshots>
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<enabled>false</enabled>
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</snapshots>
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<id>talan</id>
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<name>talan</name>
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<url>https://nexus.talanlabs.com/content/repositories/releases/</url>
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</repository>
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<repository>
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<id>central</id>
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<url>https://repo1.maven.org/maven2</url>
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</repository>
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</repositories>
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<!-- ************************* Dependencies ************************************* -->
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<dependencies>
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<!--jpam project - utilities -->
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<dependency>
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<groupId>io.github.macster110</groupId>
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<artifactId>jpamutils</artifactId>
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<version>0.0.56</version>
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</dependency>
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<!--jpam project - Deep learning java library
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DG has commented this out since there are problems with access to the maven repo
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on JDJM's Github. For now a jar file is included in the build and we'll go back to
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Maven when we can ... DG 15 Jan 2022.
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Repo for jpam code- this used for deep learning [15:17] Jamie MacAulay-->
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<dependency>
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<groupId>io.github.macster110</groupId>
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<artifactId>jdl4pam</artifactId>
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<version>0.0.94</version>
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</dependency>
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<!-- https://mvnrepository.com/artifact/gov.nist.math/jama -->
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<dependency>
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<groupId>gov.nist.math</groupId>
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<artifactId>jama</artifactId>
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<version>1.0.3</version>
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</dependency>
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<!-- https://mvnrepository.com/artifact/org.openjfx/javafx-controls -->
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<!-- IMPORTANT - IF MAVEN IS NOT DOWNLOADING THE JAVAFX FILES AND
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INSTEAD THROWING AN ERROR, IT MIGHT BE BECAUSE THERE IS AN
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INTERFERENCE WITH JAMIE'S REPOSITORY. I'm not sure why this happens,
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but it does. To fix, comment out the repository (in
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the <repositories> section above, let Maven download the JavaFX
|
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files, and then uncomment the repository again. -->
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<dependency>
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<groupId>org.openjfx</groupId>
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<artifactId>javafx-controls</artifactId>
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<version>${javafx.version}</version>
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</dependency>
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<!-- https://mvnrepository.com/artifact/org.openjfx/javafx-swing -->
|
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<!-- IMPORTANT - IF MAVEN IS NOT DOWNLOADING THE JAVAFX FILES AND
|
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INSTEAD THROWING AN ERROR, IT MIGHT BE BECAUSE THERE IS AN
|
|
INTERFERENCE WITH JAMIE'S REPOSITORY. I'm not sure why this happens,
|
|
but it does. To fix, comment out the repository (in
|
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the <repositories> section above, let Maven download the JavaFX
|
|
files, and then uncomment the repository again. -->
|
|
<dependency>
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<groupId>org.openjfx</groupId>
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<artifactId>javafx-swing</artifactId>
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<version>${javafx.version}</version>
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</dependency>
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|
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<!-- https://mvnrepository.com/artifact/org.openjfx/javafx-media -->
|
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<!-- IMPORTANT - IF MAVEN IS NOT DOWNLOADING THE JAVAFX FILES AND
|
|
INSTEAD THROWING AN ERROR, IT MIGHT BE BECAUSE THERE IS AN
|
|
INTERFERENCE WITH JAMIE'S REPOSITORY. I'm not sure why this happens,
|
|
but it does. To fix, comment out the repository (in
|
|
the <repositories> section above, let Maven download the JavaFX
|
|
files, and then uncomment the repository again. -->
|
|
<dependency>
|
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<groupId>org.openjfx</groupId>
|
|
<artifactId>javafx-media</artifactId>
|
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<version>${javafx.version}</version>
|
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</dependency>
|
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|
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<!-- https://mvnrepository.com/artifact/org.openjfx/javafx-web -->
|
|
<!-- IMPORTANT - IF MAVEN IS NOT DOWNLOADING THE JAVAFX FILES AND
|
|
INSTEAD THROWING AN ERROR, IT MIGHT BE BECAUSE THERE IS AN
|
|
INTERFERENCE WITH JAMIE'S REPOSITORY. I'm not sure why this happens,
|
|
but it does. To fix, comment out the repository (in
|
|
the <repositories> section above, let Maven download the JavaFX
|
|
files, and then uncomment the repository again. -->
|
|
<dependency>
|
|
<groupId>org.openjfx</groupId>
|
|
<artifactId>javafx-web</artifactId>
|
|
<version>${javafx.version}</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/org.apache.commons/commons-compress -->
|
|
<dependency>
|
|
<groupId>org.apache.commons</groupId>
|
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<artifactId>commons-compress</artifactId>
|
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<version>1.19</version>
|
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</dependency>
|
|
|
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<!-- https://mvnrepository.com/artifact/org.apache.commons/commons-csv -->
|
|
<dependency>
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<groupId>org.apache.commons</groupId>
|
|
<artifactId>commons-csv</artifactId>
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|
<version>1.7</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/commons-io/commons-io -->
|
|
<dependency>
|
|
<groupId>commons-io</groupId>
|
|
<artifactId>commons-io</artifactId>
|
|
<version>2.6</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/org.apache.commons/commons-lang3 -->
|
|
<dependency>
|
|
<groupId>org.apache.commons</groupId>
|
|
<artifactId>commons-lang3</artifactId>
|
|
<version>3.9</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/org.apache.commons/commons-math3 -->
|
|
<dependency>
|
|
<groupId>org.apache.commons</groupId>
|
|
<artifactId>commons-math3</artifactId>
|
|
<version>3.6.1</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/org.apache.commons/commons-math -->
|
|
<dependency>
|
|
<groupId>org.apache.commons</groupId>
|
|
<artifactId>commons-math</artifactId>
|
|
<version>2.2</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/commons-net/commons-net -->
|
|
<dependency>
|
|
<groupId>commons-net</groupId>
|
|
<artifactId>commons-net</artifactId>
|
|
<version>3.6</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/org.controlsfx/controlsfx -->
|
|
<dependency>
|
|
<groupId>org.controlsfx</groupId>
|
|
<artifactId>controlsfx</artifactId>
|
|
<version>11.0.0</version>
|
|
<exclusions>
|
|
<exclusion>
|
|
<groupId>org.openjfx</groupId>
|
|
<artifactId>javafx-base</artifactId>
|
|
</exclusion>
|
|
<exclusion>
|
|
<groupId>org.openjfx</groupId>
|
|
<artifactId>javafx-controls</artifactId>
|
|
</exclusion>
|
|
<exclusion>
|
|
<groupId>org.openjfx</groupId>
|
|
<artifactId>javafx-graphics</artifactId>
|
|
</exclusion>
|
|
<exclusion>
|
|
<groupId>org.openjfx</groupId>
|
|
<artifactId>javafx-media</artifactId>
|
|
</exclusion>
|
|
<exclusion>
|
|
<groupId>org.openjfx</groupId>
|
|
<artifactId>javafx-web</artifactId>
|
|
</exclusion>
|
|
</exclusions>
|
|
</dependency>
|
|
|
|
<!-- https://search.maven.org/artifact/org.kordamp.ikonli/ikonli-javafx/12.2.0/jar -->
|
|
<!-- Icon symbol pack to replace FontAwesome. This is the core library, and the
|
|
actual symbol packs need to be added separately (see below) -->
|
|
<dependency>
|
|
<groupId>org.kordamp.ikonli</groupId>
|
|
<artifactId>ikonli-javafx</artifactId>
|
|
<version>12.2.0</version>
|
|
</dependency>
|
|
|
|
<!-- Ikonli FontAwesome5 font pack https://kordamp.org/ikonli/cheat-sheet-fontawesome5.html -->
|
|
<!--
|
|
<dependency>
|
|
<groupId>org.kordamp.ikonli</groupId>
|
|
<artifactId>ikonli-fontawesome5-pack</artifactId>
|
|
<version>12.2.0</version>
|
|
</dependency>
|
|
-->
|
|
|
|
<!-- Ikonli MaterialDesign2 (Latest) font pack https://kordamp.org/ikonli/cheat-sheet-materialdesign2.html -->
|
|
<dependency>
|
|
<groupId>org.kordamp.ikonli</groupId>
|
|
<artifactId>ikonli-materialdesign2-pack</artifactId>
|
|
<version>12.2.0</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/net.sf.geographiclib/GeographicLib-Java -->
|
|
<dependency>
|
|
<groupId>net.sf.geographiclib</groupId>
|
|
<artifactId>GeographicLib-Java</artifactId>
|
|
<version>1.50</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/org.jogamp.gluegen/gluegen -->
|
|
<dependency>
|
|
<groupId>org.jogamp.gluegen</groupId>
|
|
<artifactId>gluegen-rt-main</artifactId>
|
|
<version>2.3.2</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/java3d/j3dutils -->
|
|
|
|
<!-- https://mvnrepository.com/artifact/java3d/j3dcore -->
|
|
|
|
<!-- https://mvnrepository.com/artifact/com.healthmarketscience.jackcess/jackcess -->
|
|
<dependency>
|
|
<groupId>com.healthmarketscience.jackcess</groupId>
|
|
<artifactId>jackcess</artifactId>
|
|
<version>3.0.1</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/com.fasterxml.jackson.core/jackson-databind -->
|
|
<dependency>
|
|
<groupId>com.fasterxml.jackson.core</groupId>
|
|
<artifactId>jackson-databind</artifactId>
|
|
<version>2.10.1</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/org.jogamp.jogl/jogl-all-main -->
|
|
<dependency>
|
|
<groupId>org.jogamp.jogl</groupId>
|
|
<artifactId>jogl-all-main</artifactId>
|
|
<version>2.3.2</version>
|
|
</dependency>
|
|
|
|
<!-- NOT SURE IF WE NEED THE JAXB LIBRARIES HERE - NO ERRORS WHEN REMOVED
|
|
<dependency>
|
|
<groupId>javax.xml.bind</groupId>
|
|
<artifactId>jaxb-api</artifactId>
|
|
<version>2.3.1</version>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>org.glassfish.jaxb</groupId>
|
|
<artifactId>jaxb-core</artifactId>
|
|
<version>2.3.0.1</version>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>com.sun.xml.bind</groupId>
|
|
<artifactId>jaxb-impl</artifactId>
|
|
<version>2.3.2</version>
|
|
</dependency>
|
|
-->
|
|
|
|
<!-- https://mvnrepository.com/artifact/org.jflac/jflac-codec -->
|
|
<dependency>
|
|
<groupId>org.jflac</groupId>
|
|
<artifactId>jflac-codec</artifactId>
|
|
<version>1.5.2</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/javax.help/javahelp -->
|
|
<dependency>
|
|
<groupId>javax.help</groupId>
|
|
<artifactId>javahelp</artifactId>
|
|
<version>2.0.05</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/net.java.dev.jna/jna -->
|
|
<dependency>
|
|
<groupId>net.java.dev.jna</groupId>
|
|
<artifactId>jna</artifactId>
|
|
<version>5.5.0</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/net.java.dev.jna/jna-platform -->
|
|
<dependency>
|
|
<groupId>net.java.dev.jna</groupId>
|
|
<artifactId>jna-platform</artifactId>
|
|
<version>5.5.0</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/com.jcraft/jsch -->
|
|
<dependency>
|
|
<groupId>com.jcraft</groupId>
|
|
<artifactId>jsch</artifactId>
|
|
<version>0.1.55</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/com.fazecast/jSerialComm -->
|
|
<dependency>
|
|
<groupId>com.fazecast</groupId>
|
|
<artifactId>jSerialComm</artifactId>
|
|
<version>2.5.3</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/edu.emory.mathcs/JTransforms -->
|
|
<dependency>
|
|
<groupId>edu.emory.mathcs</groupId>
|
|
<artifactId>JTransforms</artifactId>
|
|
<version>2.4</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/com.sun.mail/javax.mail -->
|
|
<dependency>
|
|
<groupId>com.sun.mail</groupId>
|
|
<artifactId>javax.mail</artifactId>
|
|
<version>1.6.2</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/com.diffplug.matsim/matfilerw -->
|
|
<dependency>
|
|
<groupId>com.diffplug.matsim</groupId>
|
|
<artifactId>matfilerw</artifactId>
|
|
<version>3.1.1</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/com.drewnoakes/metadata-extractor -->
|
|
<dependency>
|
|
<groupId>com.drewnoakes</groupId>
|
|
<artifactId>metadata-extractor</artifactId>
|
|
<version>2.12.0</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/mysql/mysql-connector-java -->
|
|
<dependency>
|
|
<groupId>mysql</groupId>
|
|
<artifactId>mysql-connector-java</artifactId>
|
|
<version>8.0.18</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/com.google.protobuf/protobuf-java -->
|
|
<!-- this is needed so that tensorflow models run properly (used in Deep Learning plugin) -->
|
|
<!-- NOTE it is important this is included before edu.ucar.netcdfAll so
|
|
that this version is used instead of the internal version - exclusions do
|
|
not seem to work otherwise -->
|
|
<dependency>
|
|
<groupId>com.google.protobuf</groupId>
|
|
<artifactId>protobuf-java</artifactId>
|
|
<version>3.17.0</version>
|
|
</dependency>
|
|
|
|
<!-- https://docs.unidata.ucar.edu/netcdf-java/5.2/userguide/using_netcdf_java_artifacts.html -->
|
|
<!-- exclusions have been added here to fix problem with Deep Learning plugin - see above -->
|
|
<dependency>
|
|
<groupId>edu.ucar</groupId>
|
|
<artifactId>netcdfAll</artifactId>
|
|
<version>4.6.14</version>
|
|
<exclusions>
|
|
<exclusion>
|
|
<groupId>com.google.protobuf</groupId>
|
|
<artifactId>protobuf-java</artifactId>
|
|
</exclusion>
|
|
<exclusion>
|
|
<groupId>com.google.protobuf</groupId>
|
|
<artifactId>protobuf-java-util</artifactId>
|
|
</exclusion>
|
|
</exclusions>
|
|
<scope>compile</scope>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/com.opencsv/opencsv -->
|
|
<dependency>
|
|
<groupId>com.opencsv</groupId>
|
|
<artifactId>opencsv</artifactId>
|
|
<version>5.0</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/org.springframework/org.springframework.core -->
|
|
|
|
<!-- https://mvnrepository.com/artifact/org.postgresql/postgresql -->
|
|
<dependency>
|
|
<groupId>org.postgresql</groupId>
|
|
<artifactId>postgresql</artifactId>
|
|
<version>42.2.24</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/org.renjin/renjin-script-engine -->
|
|
<dependency>
|
|
<groupId>org.renjin</groupId>
|
|
<artifactId>renjin-script-engine</artifactId>
|
|
<version>0.9.2725</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/org.slf4j/slf4j-api
|
|
this one is only needed to get rid of an annoying warning that shows up during startup -->
|
|
<dependency>
|
|
<groupId>org.slf4j</groupId>
|
|
<artifactId>slf4j-api</artifactId>
|
|
<version>1.8.0-beta4</version>
|
|
</dependency>
|
|
|
|
|
|
|
|
<!-- https://mvnrepository.com/artifact/org.slf4j/slf4j-nop
|
|
this one is only needed to get rid of an annoying warning that shows up during startup -->
|
|
<dependency>
|
|
<groupId>org.slf4j</groupId>
|
|
<artifactId>slf4j-nop</artifactId>
|
|
<version>1.8.0-beta4</version>
|
|
</dependency>
|
|
|
|
|
|
|
|
<!-- https://mvnrepository.com/artifact/org.docx4j/docx4j-JAXB-ReferenceImpl -->
|
|
<!-- note that we are excluding slf4j-api here, because if we don't then one of the
|
|
transitive dependencies of docx4j (jcl-over-slf4j) will try to load an older
|
|
version of slf4j-api, resulting in a weird warning/error that shows up every time that
|
|
PAMGuard start up -->
|
|
<!-- DONT BOTHER WITH EXCLUSION, DOESN'T MAKE THE ERROR GO AWAY. Leaving code here
|
|
just in case the older version does cause a conflict at some point -->
|
|
<dependency>
|
|
<groupId>org.docx4j</groupId>
|
|
<artifactId>docx4j-JAXB-ReferenceImpl</artifactId>
|
|
<version>11.1.3</version>
|
|
<!--
|
|
<exclusions>
|
|
<exclusion>
|
|
<groupId>org.slf4j</groupId>
|
|
<artifactId>slf4j-api</artifactId>
|
|
</exclusion>
|
|
</exclusions>
|
|
-->
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/org.xerial/sqlite-jdbc -->
|
|
<dependency>
|
|
<groupId>org.xerial</groupId>
|
|
<artifactId>sqlite-jdbc</artifactId>
|
|
<version>3.28.0</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/net.sf.ucanaccess/ucanaccess -->
|
|
<dependency>
|
|
<groupId>net.sf.ucanaccess</groupId>
|
|
<artifactId>ucanaccess</artifactId>
|
|
<version>4.0.4</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/nz.ac.waikato.cms.weka/weka-dev -->
|
|
<dependency>
|
|
<groupId>nz.ac.waikato.cms.weka</groupId>
|
|
<artifactId>weka-dev</artifactId>
|
|
<version>3.7.7</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/javax.vecmath/vecmath -->
|
|
<dependency>
|
|
<groupId>javax.vecmath</groupId>
|
|
<artifactId>vecmath</artifactId>
|
|
<version>1.5.2</version>
|
|
</dependency>
|
|
|
|
<!-- Jave2 (https://github.com/a-schild/jave2) - fork of original jave from sauronsoft. A LOT bigger; the win64 files alone are > 60Mb compared
|
|
to 14Mb originally. Since the old one worked fine, let's stick with it for now and save the space
|
|
<dependency>
|
|
<groupId>ws.schild</groupId>
|
|
<artifactId>jave-core</artifactId>
|
|
<version>2.7.1</version>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>ws.schild</groupId>
|
|
<artifactId>jave-nativebin-win64</artifactId>
|
|
<version>2.7.1</version>
|
|
</dependency>
|
|
-->
|
|
|
|
<!-- https://mvnrepository.com/artifact/it.sauronsoftware/jave
|
|
DOESN'T WORK - NOT IN THE ICM REPOSITORY ANYMORE. STICK WITH ORIG JAR FILE
|
|
<dependency>
|
|
<groupId>it.sauronsoftware</groupId>
|
|
<artifactId>jave</artifactId>
|
|
<version>1.0.2</version>
|
|
</dependency>
|
|
-->
|
|
|
|
<!-- not in Maven repository -->
|
|
<dependency>
|
|
<groupId>pamguard.org</groupId>
|
|
<artifactId>x3</artifactId>
|
|
<version>2.0.0</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/it.sauronsoftware/jave -->
|
|
<dependency>
|
|
<groupId>it.sauronsoftware</groupId>
|
|
<artifactId>jave</artifactId>
|
|
<version>1.0.2</version>
|
|
</dependency>
|
|
|
|
<!-- not in Maven repository -->
|
|
<dependency>
|
|
<groupId>com.synthbot</groupId>
|
|
<artifactId>jasiohost</artifactId>
|
|
<version>1.0.0</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/com.fasterxml.jackson.dataformat/jackson-dataformat-xml -->
|
|
<!--
|
|
<dependency>
|
|
<groupId>com.fasterxml.jackson.dataformat</groupId>
|
|
<artifactId>jackson-dataformat-xml</artifactId>
|
|
<version>2.10.1</version>
|
|
</dependency>
|
|
-->
|
|
|
|
<!-- https://mvnrepository.com/artifact/org.springframework/spring-core -->
|
|
<dependency>
|
|
<groupId>org.springframework</groupId>
|
|
<artifactId>spring-core</artifactId>
|
|
<version>5.2.3.RELEASE</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/com.1stleg/jnativehook -->
|
|
<!-- For global hotkeys, especially in Logger -->
|
|
<dependency>
|
|
<groupId>com.1stleg</groupId>
|
|
<artifactId>jnativehook</artifactId>
|
|
<version>2.1.0</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/org.swinglabs.swingx/swingx-all -->
|
|
<!-- For new Network Receive Module -->
|
|
<dependency>
|
|
<groupId>org.swinglabs.swingx</groupId>
|
|
<artifactId>swingx-all</artifactId>
|
|
<version>1.6.5-1</version>
|
|
</dependency>
|
|
|
|
|
|
</dependencies>
|
|
</project> |