mirror of
https://github.com/PAMGuard/PAMGuard.git
synced 2024-11-22 07:02:29 +00:00
1d7a986621
Skipping start of files was causing click detector to not find clicks. Changed code so first seconds are still sent, but with data set to 0, rather than not sending data since that was causing sample counts in different bits of PAMGuard to get out of synch.
974 lines
31 KiB
XML
974 lines
31 KiB
XML
<project xmlns="http://maven.apache.org/POM/4.0.0"
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xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
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xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
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<modelVersion>4.0.0</modelVersion>
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<groupId>org.pamguard</groupId>
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<artifactId>Pamguard</artifactId>
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<version>2.02.11e</version>
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<name>Pamguard</name>
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<description>Pamguard using Maven to control dependencies</description>
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<url>www.pamguard.org</url>
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<organization>
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<name>Sea Mammal Research Unit, University of St. Andrews</name>
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<url>http://www.smru.st-andrews.ac.uk</url>
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</organization>
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<properties>
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<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
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<javafx.version>21</javafx.version>
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<maven.compiler.source>11</maven.compiler.source>
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<maven.compiler.target>11</maven.compiler.target>
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<!-- Tethys version control -->
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<jaxb.runtime.version>2.4.0-b180830.0438</jaxb.runtime.version>
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<jaxb.api.version>2.4.0-b180830.0359</jaxb.api.version>
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<jaxb.xjc.version>2.4.0-b180830.0438</jaxb.xjc.version>
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</properties>
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<build>
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<!-- Define where the source and test directories are -->
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<sourceDirectory>${basedir}/src</sourceDirectory>
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<testSourceDirectory>${basedir}/src/test</testSourceDirectory> <!-- where the Unit tets are located -->
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<resources>
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<resource>
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<directory>src</directory>
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<excludes>
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<exclude>META-INF/*.SF,META-INF/*.DSA,META-INF/*.RSA</exclude>
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<exclude>**/*.java</exclude> <!-- don't include any source files -->
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<exclude>jars/*.*</exclude> <!-- don't include files in the jars folder -->
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</excludes>
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</resource>
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</resources>
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<plugins>
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<!-- original maven compiler definition - uses the JRE's javac compiler, not the one Eclipse uses
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<artifactId>maven-compiler-plugin</artifactId>
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<version>3.8.0</version>
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<configuration>
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<release>13</release>
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</configuration>
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-->
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<!-- attempt to use the Eclipse JDT compiler, so that the errors match when building
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https://stackoverflow.com/questions/38070326/java-generics-compiler-error-not-shown-in-eclipse
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https://wiki.eclipse.org/JDT/FAQ#Can_I_use_JDT_outside_Eclipse_to_compile_Java_code.3F
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https://wiki.eclipse.org/Tycho/FAQ#Can_I_use_the_Tycho_compiler_support_in_non-OSGi_projects.2C_too.3F
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-->
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<plugin>
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<groupId>org.apache.maven.plugins</groupId>
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<artifactId>maven-compiler-plugin</artifactId>
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<version>3.12.1</version>
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<configuration>
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<!-- set compiler to use Java version 11 API https://docs.oracle.com/javase/9/tools/javac.htm#JSWOR627 -->
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<release>21</release>
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<compilerId>jdt</compilerId>
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</configuration>
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<dependencies>
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<!-- https://mvnrepository.com/artifact/org.eclipse.tycho/tycho-compiler-jdt -->
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<dependency>
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<groupId>org.eclipse.tycho</groupId>
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<artifactId>tycho-compiler-jdt</artifactId>
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<version>1.5.1</version>
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</dependency>
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</dependencies>
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</plugin>
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<!-- Set up javafx properly. -->
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<plugin>
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<groupId>org.openjfx</groupId>
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<artifactId>javafx-maven-plugin</artifactId>
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<version>0.0.8</version>
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</plugin>
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<!-- Maven Shade plugin - for creating the uberjar / fatjar -->
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<!-- see http://maven.apache.org/plugins/maven-shade-plugin/index.html for details -->
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<plugin>
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<groupId>org.apache.maven.plugins</groupId>
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<artifactId>maven-shade-plugin</artifactId>
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<version>3.2.1</version>
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<configuration>
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<transformers>
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<transformer implementation="org.apache.maven.plugins.shade.resource.ServicesResourceTransformer" />
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</transformers>
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<filters>
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<!-- Moved these filters up to here from where they were int <executions><execution><configurtion>
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based on advice at https://stackoverflow.com/questions/34738653/maven-shade-plugin-does-not-exclude-the-manifest-signature-files
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and the are now working -->
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<filter>
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<artifact>*:*</artifact>
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<excludes>
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<exclude>META-INF/*.SF</exclude> <!-- get rid of manifests from library jars - also done in orig ant build file -->
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<exclude>META-INF/*.DSA</exclude>
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<exclude>META-INF/*.RSA</exclude>
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</excludes>
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</filter>
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</filters>
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</configuration>
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<executions>
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<execution>
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<phase>package</phase>
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<goals>
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<goal>shade</goal>
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</goals>
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<configuration>
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<transformers>
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<transformer implementation="org.apache.maven.plugins.shade.resource.ManifestResourceTransformer">
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<manifestEntries>
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<Main-Class>pamguard.Pamguard</Main-Class>
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<Class-Path>.</Class-Path> <!-- this is from the orig ant build file -->
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<SplashScreen-Image>Resources/pgBlankSplash.png</SplashScreen-Image> <!-- this is from the orig ant build file -->
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</manifestEntries>
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</transformer>
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<transformer implementation="org.apache.maven.plugins.shade.resource.ServicesResourceTransformer" />
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</transformers>
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</configuration>
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</execution>
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</executions>
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</plugin>
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<!-- The Maven-JDEPS plugin, to analyze necessary JDK dependencies. See
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this site for details: https://maven.apache.org/plugins/maven-jdeps-plugin/index.html -->
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<plugin>
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<groupId>com.github.marschall</groupId>
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<artifactId>jdeps-maven-plugin</artifactId>
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<version>0.5.1</version>
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</plugin>
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<!-- The Maven dependency plugin, which can copy all dependencies into a temp folder for jdeps analysis -->
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<plugin>
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<groupId>org.apache.maven.plugins</groupId>
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<artifactId>maven-dependency-plugin</artifactId>
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<version>3.1.1</version>
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<executions>
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<execution>
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<id>copy-dependencies</id>
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<phase>package</phase>
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<goals>
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<goal>copy-dependencies</goal>
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</goals>
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<configuration>
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<outputDirectory>${project.build.directory}/tempDependencies</outputDirectory>
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<overWriteReleases>false</overWriteReleases>
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<overWriteSnapshots>false</overWriteSnapshots>
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<overWriteIfNewer>true</overWriteIfNewer>
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</configuration>
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</execution>
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<!-- this deletes all the dependencies in the local repository and downloads them again.
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Run a Maven > Update after doing this in order to properly reset the dependencies. Also, you
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will need to add the 3 jar files (x3, JasioHost and jave) back into the local repository after
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running this command -->
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<!-- I'm not sure why, but every time I try to run the shade:shade build to create a
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fatjar it first runs this, which deletes all of the dependencies and completely fails.
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I think it has something to do with the lifecycle mapping, but that's beyond my Maven
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abilities right now.
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I can't even remember why I added this in the first place, so I'm going to comment
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it out
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<execution>
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<id>purge-local-dependencies</id>
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<phase>process-sources</phase>
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<goals>
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<goal>purge-local-repository</goal>
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</goals>
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<configuration>
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</configuration>
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</execution>
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-->
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</executions>
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</plugin>
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</plugins>
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<pluginManagement>
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<plugins>
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<!--This plugin's configuration is used to store Eclipse m2e settings only. It has no influence on the Maven build itself.-->
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<plugin>
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<groupId>org.eclipse.m2e</groupId>
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<artifactId>lifecycle-mapping</artifactId>
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<version>1.0.0</version>
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<configuration>
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<lifecycleMappingMetadata>
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<pluginExecutions>
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<pluginExecution>
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<pluginExecutionFilter>
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<groupId>
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org.apache.maven.plugins
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</groupId>
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<artifactId>
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maven-dependency-plugin
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</artifactId>
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<versionRange>
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[3.1.1,)
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</versionRange>
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<goals>
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<goal>
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purge-local-repository
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</goal>
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</goals>
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</pluginExecutionFilter>
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<action>
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<ignore></ignore>
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</action>
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</pluginExecution>
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</pluginExecutions>
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</lifecycleMappingMetadata>
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</configuration>
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</plugin>
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</plugins>
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</pluginManagement>
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</build>
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<reporting>
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<plugins>
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<plugin>
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<groupId>com.github.marschall</groupId>
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<artifactId>jdeps-maven-plugin</artifactId>
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<version>0.5.1</version>
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</plugin>
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</plugins>
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</reporting>
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<!-- ************************* Extra Repositories ************************************* -->
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<repositories>
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<!-- Project repo to hold the custom jar files that are not available in Maven. Do
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this so that we don't have to do the extra step of manually installing jar files in the local repo -->
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<repository>
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<id>repo</id>
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<releases>
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<enabled>true</enabled>
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<checksumPolicy>ignore</checksumPolicy>
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</releases>
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<snapshots>
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<enabled>false</enabled>
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</snapshots>
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<url>file://${project.basedir}/repo</url>
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</repository>
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<!-- Repo for netCDF -->
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<repository>
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<snapshots>
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<enabled>false</enabled>
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</snapshots>
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<id>unidata-all</id>
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<name>Unidata netCDF</name>
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<url>https://artifacts.unidata.ucar.edu/repository/unidata-all/</url>
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</repository>
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<!--
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<repository>
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<snapshots>
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<enabled>false</enabled>
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</snapshots>
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<id>geomajas</id>
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<name>geomajas</name>
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<url>http://maven.geomajas.org/</url>
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</repository>-->
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<!-- Repo for Renjin Script Engine -->
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<repository>
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<id>bedatadriven</id>
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<name>bedatadriven public repo</name>
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<url>https://nexus.bedatadriven.com/content/groups/public/</url>
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</repository>
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<repository>
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<snapshots>
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<enabled>false</enabled>
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</snapshots>
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<id>talan</id>
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<name>talan</name>
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<url>https://nexus.talanlabs.com/content/repositories/releases/</url>
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</repository>
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<repository>
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<id>central</id>
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<url>https://repo1.maven.org/maven2</url>
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</repository>
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</repositories>
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<!-- ************************* Dependencies ************************************* -->
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<dependencies>
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<!--jpam project - utilities -->
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<dependency>
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<groupId>io.github.macster110</groupId>
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<artifactId>jpamutils</artifactId>
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<version>0.0.59</version>
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</dependency>
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<!--jpam project - Deep learning java library -->
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<dependency>
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<groupId>io.github.macster110</groupId>
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<artifactId>jdl4pam</artifactId>
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<version>0.0.99a</version>
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</dependency>
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<!-- https://mvnrepository.com/artifact/gov.nist.math/jama -->
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<dependency>
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<groupId>gov.nist.math</groupId>
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<artifactId>jama</artifactId>
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<version>1.0.3</version>
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</dependency>
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<!-- https://mvnrepository.com/artifact/org.openjfx/javafx-controls -->
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<!-- IMPORTANT - IF MAVEN IS NOT DOWNLOADING THE JAVAFX FILES AND
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INSTEAD THROWING AN ERROR, IT MIGHT BE BECAUSE THERE IS AN
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INTERFERENCE WITH JAMIE'S REPOSITORY. I'm not sure why this happens,
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but it does. To fix, comment out the repository (in
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the <repositories> section above, let Maven download the JavaFX
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files, and then uncomment the repository again. -->
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<dependency>
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<groupId>org.openjfx</groupId>
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<artifactId>javafx-controls</artifactId>
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<version>${javafx.version}</version>
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</dependency>
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<!-- https://mvnrepository.com/artifact/org.openjfx/javafx-swing -->
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<!-- IMPORTANT - IF MAVEN IS NOT DOWNLOADING THE JAVAFX FILES AND
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INSTEAD THROWING AN ERROR, IT MIGHT BE BECAUSE THERE IS AN
|
|
INTERFERENCE WITH JAMIE'S REPOSITORY. I'm not sure why this happens,
|
|
but it does. To fix, comment out the repository (in
|
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the <repositories> section above, let Maven download the JavaFX
|
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files, and then uncomment the repository again. -->
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|
<dependency>
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<groupId>org.openjfx</groupId>
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<artifactId>javafx-swing</artifactId>
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<version>${javafx.version}</version>
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</dependency>
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<!-- https://mvnrepository.com/artifact/org.openjfx/javafx-media -->
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<!-- IMPORTANT - IF MAVEN IS NOT DOWNLOADING THE JAVAFX FILES AND
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INSTEAD THROWING AN ERROR, IT MIGHT BE BECAUSE THERE IS AN
|
|
INTERFERENCE WITH JAMIE'S REPOSITORY. I'm not sure why this happens,
|
|
but it does. To fix, comment out the repository (in
|
|
the <repositories> section above, let Maven download the JavaFX
|
|
files, and then uncomment the repository again. -->
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|
<dependency>
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<groupId>org.openjfx</groupId>
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<artifactId>javafx-media</artifactId>
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<version>${javafx.version}</version>
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</dependency>
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<!-- https://mvnrepository.com/artifact/org.openjfx/javafx-web -->
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<!-- IMPORTANT - IF MAVEN IS NOT DOWNLOADING THE JAVAFX FILES AND
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|
INSTEAD THROWING AN ERROR, IT MIGHT BE BECAUSE THERE IS AN
|
|
INTERFERENCE WITH JAMIE'S REPOSITORY. I'm not sure why this happens,
|
|
but it does. To fix, comment out the repository (in
|
|
the <repositories> section above, let Maven download the JavaFX
|
|
files, and then uncomment the repository again. -->
|
|
<dependency>
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<groupId>org.openjfx</groupId>
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<artifactId>javafx-web</artifactId>
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<version>${javafx.version}</version>
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</dependency>
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<!-- Decorates JavaFX components with error icons if inputs are incorrect-->
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<dependency>
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<groupId>net.synedra</groupId>
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|
<artifactId>validatorfx</artifactId>
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<version>0.4.2</version>
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</dependency>
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|
|
<!-- https://mvnrepository.com/artifact/org.apache.commons/commons-compress -->
|
|
<dependency>
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<groupId>org.apache.commons</groupId>
|
|
<artifactId>commons-compress</artifactId>
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<version>1.19</version>
|
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</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/org.apache.commons/commons-csv -->
|
|
<dependency>
|
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<groupId>org.apache.commons</groupId>
|
|
<artifactId>commons-csv</artifactId>
|
|
<version>1.7</version>
|
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</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/commons-io/commons-io -->
|
|
<dependency>
|
|
<groupId>commons-io</groupId>
|
|
<artifactId>commons-io</artifactId>
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|
<version>2.6</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/org.apache.commons/commons-lang3 -->
|
|
<dependency>
|
|
<groupId>org.apache.commons</groupId>
|
|
<artifactId>commons-lang3</artifactId>
|
|
<version>3.9</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/org.apache.commons/commons-math3 -->
|
|
<dependency>
|
|
<groupId>org.apache.commons</groupId>
|
|
<artifactId>commons-math3</artifactId>
|
|
<version>3.6.1</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/org.apache.commons/commons-math -->
|
|
<dependency>
|
|
<groupId>org.apache.commons</groupId>
|
|
<artifactId>commons-math</artifactId>
|
|
<version>2.2</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/commons-net/commons-net -->
|
|
<dependency>
|
|
<groupId>commons-net</groupId>
|
|
<artifactId>commons-net</artifactId>
|
|
<version>3.6</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/org.controlsfx/controlsfx -->
|
|
<dependency>
|
|
<groupId>org.controlsfx</groupId>
|
|
<artifactId>controlsfx</artifactId>
|
|
<version>11.2.0</version>
|
|
<exclusions>
|
|
<exclusion>
|
|
<groupId>org.openjfx</groupId>
|
|
<artifactId>javafx-base</artifactId>
|
|
</exclusion>
|
|
<exclusion>
|
|
<groupId>org.openjfx</groupId>
|
|
<artifactId>javafx-controls</artifactId>
|
|
</exclusion>
|
|
<exclusion>
|
|
<groupId>org.openjfx</groupId>
|
|
<artifactId>javafx-graphics</artifactId>
|
|
</exclusion>
|
|
<exclusion>
|
|
<groupId>org.openjfx</groupId>
|
|
<artifactId>javafx-media</artifactId>
|
|
</exclusion>
|
|
<exclusion>
|
|
<groupId>org.openjfx</groupId>
|
|
<artifactId>javafx-web</artifactId>
|
|
</exclusion>
|
|
</exclusions>
|
|
</dependency>
|
|
|
|
<!-- https://search.maven.org/artifact/org.kordamp.ikonli/ikonli-javafx/12.2.0/jar -->
|
|
<!-- Icon symbol pack to replace FontAwesome. This is the core library, and the
|
|
actual symbol packs need to be added separately (see below) -->
|
|
<dependency>
|
|
<groupId>org.kordamp.ikonli</groupId>
|
|
<artifactId>ikonli-javafx</artifactId>
|
|
<version>12.3.1</version>
|
|
</dependency>
|
|
|
|
<!-- Icon symbol pack for swing icons . -->
|
|
<dependency>
|
|
<groupId>org.kordamp.ikonli</groupId>
|
|
<artifactId>ikonli-swing</artifactId>
|
|
<version>12.3.1</version>
|
|
</dependency>
|
|
|
|
<!-- Ikonli MaterialDesign2 (Latest) font pack https://kordamp.org/ikonli/cheat-sheet-materialdesign2.html -->
|
|
<dependency>
|
|
<groupId>org.kordamp.ikonli</groupId>
|
|
<artifactId>ikonli-materialdesign2-pack</artifactId>
|
|
<version>12.3.1</version>
|
|
</dependency>
|
|
|
|
<!-- Ikonli File Icons (Latest) font pack https://kordamp.org/ikonli/cheat-sheet-materialdesign2.html -->
|
|
<dependency>
|
|
<groupId>org.kordamp.ikonli</groupId>
|
|
<artifactId>ikonli-fileicons-pack</artifactId>
|
|
<version>12.3.1</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/net.sf.geographiclib/GeographicLib-Java
|
|
Used in the video range module-->
|
|
<dependency>
|
|
<groupId>net.sf.geographiclib</groupId>
|
|
<artifactId>GeographicLib-Java</artifactId>
|
|
<version>1.50</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/org.jogamp.gluegen/gluegen
|
|
<dependency>
|
|
<groupId>org.jogamp.gluegen</groupId>
|
|
<artifactId>gluegen-rt-main</artifactId>
|
|
<version>2.3.2</version>
|
|
</dependency>-->
|
|
|
|
|
|
<!-- https://mvnrepository.com/artifact/com.healthmarketscience.jackcess/jackcess
|
|
<dependency>
|
|
<groupId>com.healthmarketscience.jackcess</groupId>
|
|
<artifactId>jackcess</artifactId>
|
|
<version>3.0.1</version>
|
|
</dependency>-->
|
|
|
|
<!-- https://mvnrepository.com/artifact/com.fasterxml.jackson.core/jackson-databind -->
|
|
<dependency>
|
|
<groupId>com.fasterxml.jackson.core</groupId>
|
|
<artifactId>jackson-databind</artifactId>
|
|
<version>2.10.1</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/org.jogamp.jogl/jogl-all-main
|
|
<dependency>
|
|
<groupId>org.jogamp.jogl</groupId>
|
|
<artifactId>jogl-all-main</artifactId>
|
|
<version>2.3.2</version>
|
|
</dependency>-->
|
|
|
|
<!-- NOT SURE IF WE NEED THE JAXB LIBRARIES HERE - NO ERRORS WHEN REMOVED
|
|
<dependency>
|
|
<groupId>javax.xml.bind</groupId>
|
|
<artifactId>jaxb-api</artifactId>
|
|
<version>2.3.1</version>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>org.glassfish.jaxb</groupId>
|
|
<artifactId>jaxb-core</artifactId>
|
|
<version>2.3.0.1</version>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>com.sun.xml.bind</groupId>
|
|
<artifactId>jaxb-impl</artifactId>
|
|
<version>2.3.2</version>
|
|
</dependency>
|
|
-->
|
|
|
|
<!-- https://mvnrepository.com/artifact/org.jflac/jflac-codec -->
|
|
<dependency>
|
|
<groupId>org.jflac</groupId>
|
|
<artifactId>jflac-codec</artifactId>
|
|
<version>1.5.2</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/javax.help/javahelp -->
|
|
<dependency>
|
|
<groupId>javax.help</groupId>
|
|
<artifactId>javahelp</artifactId>
|
|
<version>2.0.05</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/net.java.dev.jna/jna -->
|
|
<dependency>
|
|
<groupId>net.java.dev.jna</groupId>
|
|
<artifactId>jna</artifactId>
|
|
<version>5.5.0</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/net.java.dev.jna/jna-platform -->
|
|
<dependency>
|
|
<groupId>net.java.dev.jna</groupId>
|
|
<artifactId>jna-platform</artifactId>
|
|
<version>5.5.0</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/com.jcraft/jsch -->
|
|
<dependency>
|
|
<groupId>com.jcraft</groupId>
|
|
<artifactId>jsch</artifactId>
|
|
<version>0.1.55</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/com.fazecast/jSerialComm -->
|
|
<dependency>
|
|
<groupId>com.fazecast</groupId>
|
|
<artifactId>jSerialComm</artifactId>
|
|
<version>2.11.0</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/edu.emory.mathcs/JTransforms -->
|
|
<dependency>
|
|
<groupId>edu.emory.mathcs</groupId>
|
|
<artifactId>JTransforms</artifactId>
|
|
<version>2.4</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/com.sun.mail/javax.mail -->
|
|
<dependency>
|
|
<groupId>com.sun.mail</groupId>
|
|
<artifactId>javax.mail</artifactId>
|
|
<version>1.6.2</version>
|
|
</dependency>
|
|
|
|
|
|
<!-- https://mvnrepository.com/artifact/com.drewnoakes/metadata-extractor -->
|
|
<dependency>
|
|
<groupId>com.drewnoakes</groupId>
|
|
<artifactId>metadata-extractor</artifactId>
|
|
<version>2.12.0</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/mysql/mysql-connector-java -->
|
|
<dependency>
|
|
<groupId>mysql</groupId>
|
|
<artifactId>mysql-connector-java</artifactId>
|
|
<version>8.0.18</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/com.google.protobuf/protobuf-java -->
|
|
<!-- this is needed so that tensorflow models run properly (used in Deep Learning plugin) -->
|
|
<!-- NOTE it is important this is included before edu.ucar.netcdfAll so
|
|
that this version is used instead of the internal version - exclusions do
|
|
not seem to work otherwise -->
|
|
<dependency>
|
|
<groupId>com.google.protobuf</groupId>
|
|
<artifactId>protobuf-java</artifactId>
|
|
<version>3.17.0</version>
|
|
</dependency>
|
|
|
|
<!-- https://docs.unidata.ucar.edu/netcdf-java/5.2/userguide/using_netcdf_java_artifacts.html -->
|
|
<!-- exclusions have been added here to fix problem with Deep Learning plugin - see above -->
|
|
<dependency>
|
|
<groupId>edu.ucar</groupId>
|
|
<artifactId>netcdfAll</artifactId>
|
|
<version>4.6.14</version>
|
|
<exclusions>
|
|
<exclusion>
|
|
<groupId>com.google.protobuf</groupId>
|
|
<artifactId>protobuf-java</artifactId>
|
|
</exclusion>
|
|
<exclusion>
|
|
<groupId>com.google.protobuf</groupId>
|
|
<artifactId>protobuf-java-util</artifactId>
|
|
</exclusion>
|
|
</exclusions>
|
|
<scope>compile</scope>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/com.opencsv/opencsv -->
|
|
<dependency>
|
|
<groupId>com.opencsv</groupId>
|
|
<artifactId>opencsv</artifactId>
|
|
<version>5.0</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/org.springframework/org.springframework.core -->
|
|
|
|
<!-- https://mvnrepository.com/artifact/org.postgresql/postgresql -->
|
|
<dependency>
|
|
<groupId>org.postgresql</groupId>
|
|
<artifactId>postgresql</artifactId>
|
|
<version>42.2.24</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/org.renjin/renjin-script-engine
|
|
Used to export data to R structures-->
|
|
<dependency>
|
|
<groupId>org.renjin</groupId>
|
|
<artifactId>renjin-script-engine</artifactId>
|
|
<version>0.9.2725</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/org.slf4j/slf4j-api
|
|
this one is only needed to get rid of an annoying warning that shows up during startup -->
|
|
<dependency>
|
|
<groupId>org.slf4j</groupId>
|
|
<artifactId>slf4j-api</artifactId>
|
|
<version>1.8.0-beta4</version>
|
|
</dependency>
|
|
|
|
|
|
<!-- https://mvnrepository.com/artifact/org.slf4j/slf4j-nop
|
|
this one is only needed to get rid of an annoying warning that shows up during startup -->
|
|
<dependency>
|
|
<groupId>org.slf4j</groupId>
|
|
<artifactId>slf4j-nop</artifactId>
|
|
<version>1.8.0-beta4</version>
|
|
</dependency>
|
|
|
|
|
|
|
|
<!-- https://mvnrepository.com/artifact/org.docx4j/docx4j-JAXB-ReferenceImpl -->
|
|
<!-- note that we are excluding slf4j-api here, because if we don't then one of the
|
|
transitive dependencies of docx4j (jcl-over-slf4j) will try to load an older
|
|
version of slf4j-api, resulting in a weird warning/error that shows up every time that
|
|
PAMGuard start up -->
|
|
<!-- DONT BOTHER WITH EXCLUSION, DOESN'T MAKE THE ERROR GO AWAY. Leaving code here
|
|
just in case the older version does cause a conflict at some point -->
|
|
<dependency>
|
|
<groupId>org.docx4j</groupId>
|
|
<artifactId>docx4j-JAXB-ReferenceImpl</artifactId>
|
|
<version>11.1.3</version>
|
|
<!--
|
|
<exclusions>
|
|
<exclusion>
|
|
<groupId>org.slf4j</groupId>
|
|
<artifactId>slf4j-api</artifactId>
|
|
</exclusion>
|
|
</exclusions>
|
|
-->
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/org.xerial/sqlite-jdbc -->
|
|
<dependency>
|
|
<groupId>org.xerial</groupId>
|
|
<artifactId>sqlite-jdbc</artifactId>
|
|
<version>3.45.3.0</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/net.sf.ucanaccess/ucanaccess -->
|
|
<dependency>
|
|
<groupId>net.sf.ucanaccess</groupId>
|
|
<artifactId>ucanaccess</artifactId>
|
|
<version>4.0.4</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/nz.ac.waikato.cms.weka/weka-dev -->
|
|
<dependency>
|
|
<groupId>nz.ac.waikato.cms.weka</groupId>
|
|
<artifactId>weka-dev</artifactId>
|
|
<version>3.7.7</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/javax.vecmath/vecmath -->
|
|
<dependency>
|
|
<groupId>javax.vecmath</groupId>
|
|
<artifactId>vecmath</artifactId>
|
|
<version>1.5.2</version>
|
|
</dependency>
|
|
|
|
<!-- Jave2 (https://github.com/a-schild/jave2) - fork of original jave from sauronsoft. A LOT bigger; the win64 files alone are > 60Mb compared
|
|
to 14Mb originally. Since the old one worked fine, let's stick with it for now and save the space
|
|
<dependency>
|
|
<groupId>ws.schild</groupId>
|
|
<artifactId>jave-core</artifactId>
|
|
<version>2.7.1</version>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>ws.schild</groupId>
|
|
<artifactId>jave-nativebin-win64</artifactId>
|
|
<version>2.7.1</version>
|
|
</dependency>
|
|
-->
|
|
|
|
<!-- https://mvnrepository.com/artifact/it.sauronsoftware/jave
|
|
DOESN'T WORK - NOT IN THE ICM REPOSITORY ANYMORE. STICK WITH ORIG JAR FILE
|
|
<dependency>
|
|
<groupId>it.sauronsoftware</groupId>
|
|
<artifactId>jave</artifactId>
|
|
<version>1.0.2</version>
|
|
</dependency>
|
|
-->
|
|
|
|
|
|
<!-- From NilusXMLGenerator POM at https://bitbucket.org/tethysacousticmetadata/nilusxmlgenerator/src/master/-->
|
|
<dependency>
|
|
<groupId>org.eclipse.persistence</groupId>
|
|
<artifactId>org.eclipse.persistence.moxy</artifactId>
|
|
<version>2.5.0</version>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>javax.xml.bind</groupId>
|
|
<artifactId>jaxb-api</artifactId>
|
|
<version>${jaxb.api.version}</version>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>org.glassfish.jaxb</groupId>
|
|
<artifactId>jaxb-runtime</artifactId>
|
|
<version>${jaxb.runtime.version}</version>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>org.glassfish.jaxb</groupId>
|
|
<artifactId>jaxb-xjc</artifactId>
|
|
<version>${jaxb.xjc.version}</version>
|
|
</dependency>
|
|
|
|
|
|
<!-- dependencies copied from TethysJavaClient -->
|
|
<dependency>
|
|
<groupId>com.sun.jersey.contribs</groupId>
|
|
<artifactId>jersey-multipart</artifactId>
|
|
<version>1.18.1</version>
|
|
</dependency>
|
|
|
|
|
|
<dependency>
|
|
<groupId>commons-cli</groupId>
|
|
<artifactId>commons-cli</artifactId>
|
|
<version>1.2</version>
|
|
</dependency>
|
|
|
|
|
|
<dependency>
|
|
<groupId>org.apache.poi</groupId>
|
|
<artifactId>poi</artifactId>
|
|
<version>3.10-beta1</version>
|
|
</dependency>
|
|
|
|
|
|
<dependency>
|
|
<groupId>com.sun.jersey</groupId>
|
|
<artifactId>jersey-client</artifactId>
|
|
<version>1.18.1</version>
|
|
</dependency>
|
|
|
|
|
|
<dependency>
|
|
<groupId>com.sun.jersey.contribs</groupId>
|
|
<artifactId>jersey-apache-client</artifactId>
|
|
<version>1.18.1</version>
|
|
</dependency>
|
|
|
|
|
|
<dependency>
|
|
<groupId>com.miglayout</groupId>
|
|
<artifactId>miglayout</artifactId>
|
|
<version>3.7.4</version>
|
|
</dependency>
|
|
|
|
|
|
<dependency>
|
|
<groupId>ca.juliusdavies</groupId>
|
|
<artifactId>not-yet-commons-ssl</artifactId>
|
|
<version>0.3.11</version>
|
|
</dependency>
|
|
|
|
|
|
<dependency>
|
|
<groupId>javax.ws.rs</groupId>
|
|
<artifactId>javax.ws.rs-api</artifactId>
|
|
<version>2.1.1</version>
|
|
</dependency>
|
|
|
|
|
|
<dependency>
|
|
<groupId>javax.xml.bind</groupId>
|
|
<artifactId>jaxb-api</artifactId>
|
|
<version>2.2.11</version>
|
|
</dependency>
|
|
|
|
|
|
<dependency>
|
|
<groupId>com.sun.xml.bind</groupId>
|
|
<artifactId>jaxb-impl</artifactId>
|
|
<version>2.2.11</version>
|
|
</dependency>
|
|
|
|
|
|
<dependency>
|
|
<groupId>javax.activation</groupId>
|
|
<artifactId>activation</artifactId>
|
|
<version>1.1</version>
|
|
</dependency>
|
|
|
|
|
|
<dependency>
|
|
<groupId>org.glassfish.jaxb</groupId>
|
|
<artifactId>jaxb-core</artifactId>
|
|
<version>2.2.11</version>
|
|
</dependency>
|
|
|
|
|
|
<dependency>
|
|
<groupId>org.glassfish.jersey.core</groupId>
|
|
<artifactId>jersey-common</artifactId>
|
|
<version>2.2</version>
|
|
</dependency>
|
|
|
|
|
|
<dependency>
|
|
<groupId>org.apache.commons</groupId>
|
|
<artifactId>commons-text</artifactId>
|
|
<version>1.9</version>
|
|
</dependency>
|
|
|
|
<!-- dependencies copied from TethysJavaClient END -->
|
|
|
|
|
|
<!-- Thethy library not in Maven central, so you may need to copy the javaclient and nilus folders from
|
|
e.g. C:\Users\dg50\source\repos\**your projectfolder**\repo\tethys\org
|
|
to C:\Users\dg50\.m2\repository\tethys\org -->
|
|
<dependency>
|
|
<groupId>tethys.org</groupId>
|
|
<artifactId>nilus</artifactId>
|
|
<version>3.0</version>
|
|
</dependency>
|
|
|
|
<dependency>
|
|
<groupId>tethys.org</groupId>
|
|
<artifactId>javaclient</artifactId>
|
|
<version>3.0</version>
|
|
</dependency>
|
|
|
|
<!--
|
|
X3 library for decompressing sud files. Not in Maven repository
|
|
you may need to copy files from your downloaded PAMGuard source code,
|
|
e.g. C:\Users\*yourreposfolder*\source\repos\PAMGuardPAMGuard\repo\pamguard\org\x3\2.2.2 to
|
|
C:\Users\*yourusername*\.m2\repository\pamguard\org\x3\2.2.2
|
|
-->
|
|
<dependency>
|
|
<groupId>org.pamguard</groupId>
|
|
<artifactId>x3</artifactId>
|
|
<version>2.2.7</version>
|
|
</dependency>
|
|
|
|
|
|
<!-- https://mvnrepository.com/artifact/it.sauronsoftware/jave -->
|
|
<dependency>
|
|
<groupId>it.sauronsoftware</groupId>
|
|
<artifactId>jave</artifactId>
|
|
<version>1.0.2</version>
|
|
</dependency>
|
|
|
|
<!-- not in Maven repository -->
|
|
<dependency>
|
|
<groupId>com.synthbot</groupId>
|
|
<artifactId>jasiohost</artifactId>
|
|
<version>1.0.0</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/com.fasterxml.jackson.dataformat/jackson-dataformat-xml -->
|
|
<!--
|
|
<dependency>
|
|
<groupId>com.fasterxml.jackson.dataformat</groupId>
|
|
<artifactId>jackson-dataformat-xml</artifactId>
|
|
<version>2.10.1</version>
|
|
</dependency>
|
|
-->
|
|
|
|
<!-- https://mvnrepository.com/artifact/org.springframework/spring-core -->
|
|
<dependency>
|
|
<groupId>org.springframework</groupId>
|
|
<artifactId>spring-core</artifactId>
|
|
<version>5.2.3.RELEASE</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/com.1stleg/jnativehook -->
|
|
<!-- For global hotkeys, especially in Logger -->
|
|
<dependency>
|
|
<groupId>com.1stleg</groupId>
|
|
<artifactId>jnativehook</artifactId>
|
|
<version>2.1.0</version>
|
|
</dependency>
|
|
|
|
<!-- https://mvnrepository.com/artifact/org.swinglabs.swingx/swingx-all -->
|
|
<!-- For new Network Receive Module -->
|
|
<dependency>
|
|
<groupId>org.swinglabs.swingx</groupId>
|
|
<artifactId>swingx-all</artifactId>
|
|
<version>1.6.5-1</version>
|
|
</dependency>
|
|
|
|
|
|
<!-- Extra 3D bits for JavaFX -->
|
|
<dependency>
|
|
<groupId>org.fxyz3d</groupId>
|
|
<artifactId>fxyz3d</artifactId>
|
|
<version>0.6.0</version>
|
|
</dependency>
|
|
|
|
<!-- Atlanta style for JavaFX -->
|
|
<dependency>
|
|
<groupId>io.github.mkpaz</groupId>
|
|
<artifactId>atlantafx-base</artifactId>
|
|
<version>2.0.1</version>
|
|
</dependency>
|
|
|
|
</dependencies>
|
|
</project> |