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Detection, Classification, and Localisation of marine mammal and other bioacoustic signals
93 Commits 2 Branches 9 Tags 386 MiB
Java 70.8%
PureBasic 23.2%
HTML 4.1%
CSS 1.9%
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Jamie Mac da387005a3
Click train, CPOD, Time Base Display, Ishmael updates and Google deep learning integration (#28) 
* Updates to click train detector

New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings

* Create click_train_help.md

* Update click_train_help.md

* Screenshots

* Update click_train_help.md

* Update click_train_help.md

* Update click_train_help.md

* More screenshots

* Add screenshots

* Update click_train_help.md

* Add classifier screenshot

* Update click_train_help.md

* Update click_train_help.md

* Update click_train_help.md

* Updates and bug fixes to click train detector and CPOD importer

* Update click_train_help.md

* Update POM with latest jdl4pam

* Add screenshots for click train detector help

* Screenshots

* Update click_train_help.md

* Defult option for CPOD and porpoise to click train detector.

Also a minor

* Update pom.xml

* Bug fix for raw spectrogram in TDDisplayFX

* Update KetosClassifier.java

* Updates to click train detector

New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings

* Create click_train_help.md

* Update click_train_help.md

* Screenshots

* Update click_train_help.md

* More screenshots

* Update click_train_help.md

* Update click_train_help.md

* Add screenshots

* Add classifier screenshot

* Update click_train_help.md

* Updates and bug fixes to click train detector and CPOD importer

* Update click_train_help.md

* Update click_train_help.md

* Update click_train_help.md

* Update click_train_help.md

* Add screenshots for click train detector help

* Screenshots

* Update click_train_help.md

* Defult option for CPOD and porpoise to click train detector.

Also a minor

* Bug fix for raw spectrogram in TDDisplayFX

* Update KetosClassifier.java

* Fix standard classifier JSON logging

* Update click_train_help.md

* Fixed bug in sweep classifier when using SoundTrap click detections

* Added some colour averaging in the TFDisplayFX spectrgoram

* Bug fix for rainbow click bearings

Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup

* Google humpback whale deep learning classifier

Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.

* Updated the prediction plots on time display

Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.

* Updates to TDisplayFX

yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX

* Updates to click train detector

New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings

* Create click_train_help.md

* Update click_train_help.md

* Screenshots

* Update click_train_help.md

* More screenshots

* Update click_train_help.md

* Update click_train_help.md

* Add screenshots

* Add classifier screenshot

* Update click_train_help.md

* Updates and bug fixes to click train detector and CPOD importer

* Update click_train_help.md

* Update click_train_help.md

* Update click_train_help.md

* Update click_train_help.md

* Add screenshots for click train detector help

* Screenshots

* Update click_train_help.md

* Defult option for CPOD and porpoise to click train detector.

Also a minor

* Updates to click train detector

New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings

* Create click_train_help.md

* Update click_train_help.md

* Update click_train_help.md

* Updates and bug fixes to click train detector and CPOD importer

* Bug fix for raw spectrogram in TDDisplayFX

* Update KetosClassifier.java

* Fix standard classifier JSON logging

* Fixed bug in sweep classifier when using SoundTrap click detections

* Added some colour averaging in the TFDisplayFX spectrgoram

* Bug fix for rainbow click bearings

Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup

* Google humpback whale deep learning classifier

Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.

* Updated the prediction plots on time display

Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.

* Updates to TDisplayFX

yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX

* Merge fixes to click train detector

* Bug fix to UI
2022-04-20 12:27:21 +01:00
.settings Click train, CPOD, Time Base Display, Ishmael updates and Google deep learning integration (#28) 2022-04-20 12:27:21 +01:00
buildconfigurations Adding a Maven build configuration to the repo to make life easier for 2022-02-04 16:45:17 +00:00
lib64 Commit PAMGuard code from SVN r6251 to GIT 2022-01-07 10:41:38 +00:00
liblinux Commit PAMGuard code from SVN r6251 to GIT 2022-01-07 10:41:38 +00:00
repo Getting jar files from main which are needed for some libs that are not 2022-02-02 14:51:58 +00:00
src Click train, CPOD, Time Base Display, Ishmael updates and Google deep learning integration (#28) 2022-04-20 12:27:21 +01:00
.classpath Click train, CPOD, Time Base Display, Ishmael updates and Google deep learning integration (#28) 2022-04-20 12:27:21 +01:00
.fatjar Commit PAMGuard code from SVN r6251 to GIT 2022-01-07 10:41:38 +00:00
.gitattributes Initial commit 2022-01-07 10:27:52 +00:00
.gitignore Click train, CPOD, Time Base Display, Ishmael updates and Google deep learning integration (#28) 2022-04-20 12:27:21 +01:00
.project Fixes to NoGUI, Network send and spectrogram graphics. (#23) 2022-02-27 14:06:26 +00:00
BlankAccess._accdb Commit PAMGuard code from SVN r6251 to GIT 2022-01-07 10:41:38 +00:00
BlankOOo._odb Commit PAMGuard code from SVN r6251 to GIT 2022-01-07 10:41:38 +00:00
buoynet.exe Commit PAMGuard code from SVN r6251 to GIT 2022-01-07 10:41:38 +00:00
dependency-reduced-pom.xml Updates to readme and version info for release of V2.02.03 2022-02-08 17:32:13 +00:00
javaOptions32.PNG Commit PAMGuard code from SVN r6251 to GIT 2022-01-07 10:41:38 +00:00
javaOptions64.PNG Commit PAMGuard code from SVN r6251 to GIT 2022-01-07 10:41:38 +00:00
libgcc_s_dw2-1.dll Commit PAMGuard code from SVN r6251 to GIT 2022-01-07 10:41:38 +00:00
libstdc++-6.dll Commit PAMGuard code from SVN r6251 to GIT 2022-01-07 10:41:38 +00:00
LICENSE Create LICENSE 2022-01-07 11:27:26 +00:00
License_GNU_GPL3.html Commit PAMGuard code from SVN r6251 to GIT 2022-01-07 10:41:38 +00:00
License_GNU_GPL3.txt Commit PAMGuard code from SVN r6251 to GIT 2022-01-07 10:41:38 +00:00
missing_Java.html Commit PAMGuard code from SVN r6251 to GIT 2022-01-07 10:41:38 +00:00
msvcr100.dll Commit PAMGuard code from SVN r6251 to GIT 2022-01-07 10:41:38 +00:00
NetworkMonitor.exe Commit PAMGuard code from SVN r6251 to GIT 2022-01-07 10:41:38 +00:00
PamguardBeta32_MixedMode.l4j.ini Commit PAMGuard code from SVN r6251 to GIT 2022-01-07 10:41:38 +00:00
PamguardBeta32_ViewerMode.l4j.ini Commit PAMGuard code from SVN r6251 to GIT 2022-01-07 10:41:38 +00:00
PamguardBeta32.l4j.ini Commit PAMGuard code from SVN r6251 to GIT 2022-01-07 10:41:38 +00:00
PamguardSettings.psf Commit PAMGuard code from SVN r6251 to GIT 2022-01-07 10:41:38 +00:00
PamSettingsFiles.psg Commit PAMGuard code from SVN r6251 to GIT 2022-01-07 10:41:38 +00:00
pom.xml Click train, CPOD, Time Base Display, Ishmael updates and Google deep learning integration (#28) 2022-04-20 12:27:21 +01:00
README.html Updates to readme and version info for release of V2.02.03 2022-02-08 17:32:13 +00:00
readme.md Update readme.md 2022-01-07 11:47:50 +00:00
recentDatabase.psg Commit PAMGuard code from SVN r6251 to GIT 2022-01-07 10:41:38 +00:00
vcruntime140.dll Commit PAMGuard code from SVN r6251 to GIT 2022-01-07 10:41:38 +00:00
WMM.COF Commit PAMGuard code from SVN r6251 to GIT 2022-01-07 10:41:38 +00:00

readme.md

This is the main code repository for the PAMGuard software.

This repository was created on 7 January 2022 from sourceforge SVN repository at https://sourceforge.net/p/pamguard/svn/HEAD/tree/ revision r6278.

If you are a PAMGuard developer, you should clone and branch this repository and share with any collaborators in your own workspace. When your work is ready, contact the PAMGuard team to have your changes merged back into this repo.