PAMGuard/buildconfigurations
Douglas Gillespie 8a34362261 Squashed commit of the following:
commit f2860d8154
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date:   Fri Jun 3 08:48:16 2022 +0100

    Small changes to support Genesis work

commit 91a8e5fec0
Author: Jamie Mac <macster110@gmail.com>
Date:   Fri May 27 06:39:20 2022 -0600

    Added data selectors to Click Train Detector (#34)

    * Updates to click train detector

    New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
    CPOD data can now build average waveforms.
    CPOD click trains can be viewed in TDisplayFX pop up menu displays
    Fixed Peak Frequency symbol chooser so it saves the colour box settings

    * Create click_train_help.md

    * Update click_train_help.md

    * Screenshots

    * Update click_train_help.md

    * Update click_train_help.md

    * Update click_train_help.md

    * More screenshots

    * Add screenshots

    * Update click_train_help.md

    * Add classifier screenshot

    * Update click_train_help.md

    * Update click_train_help.md

    * Update click_train_help.md

    * Updates and bug fixes to click train detector and CPOD importer

    * Update click_train_help.md

    * Update POM with latest jdl4pam

    * Add screenshots for click train detector help

    * Screenshots

    * Update click_train_help.md

    * Defult option for CPOD and porpoise to click train detector.

    Also a minor

    * Update pom.xml

    * Bug fix for raw spectrogram in TDDisplayFX

    * Update KetosClassifier.java

    * Updates to click train detector

    New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
    CPOD data can now build average waveforms.
    CPOD click trains can be viewed in TDisplayFX pop up menu displays
    Fixed Peak Frequency symbol chooser so it saves the colour box settings

    * Create click_train_help.md

    * Update click_train_help.md

    * Screenshots

    * Update click_train_help.md

    * More screenshots

    * Update click_train_help.md

    * Update click_train_help.md

    * Add screenshots

    * Add classifier screenshot

    * Update click_train_help.md

    * Updates and bug fixes to click train detector and CPOD importer

    * Update click_train_help.md

    * Update click_train_help.md

    * Update click_train_help.md

    * Update click_train_help.md

    * Add screenshots for click train detector help

    * Screenshots

    * Update click_train_help.md

    * Defult option for CPOD and porpoise to click train detector.

    Also a minor

    * Bug fix for raw spectrogram in TDDisplayFX

    * Update KetosClassifier.java

    * Fix standard classifier JSON logging

    * Update click_train_help.md

    * Fixed bug in sweep classifier when using SoundTrap click detections

    * Added some colour averaging in the TFDisplayFX spectrgoram

    * Bug fix for rainbow click bearings

    Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup

    * Google humpback whale deep learning classifier

    Google's humpback whale deep learning classifier can now be imported.
    Updated TDisplayFX to make the data selection panes cleaner and clearer.
    Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.

    * Updated the prediction plots on time display

    Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.

    * Updates to TDisplayFX

    yFIshmael now owrks with TDisplayFX
    TDisplayFX UI changes to make simpler.
    Some abstraction for drawing lines on TDisplayFX

    * Updates to click train detector

    New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
    CPOD data can now build average waveforms.
    CPOD click trains can be viewed in TDisplayFX pop up menu displays
    Fixed Peak Frequency symbol chooser so it saves the colour box settings

    * Create click_train_help.md

    * Update click_train_help.md

    * Screenshots

    * Update click_train_help.md

    * More screenshots

    * Update click_train_help.md

    * Update click_train_help.md

    * Add screenshots

    * Add classifier screenshot

    * Update click_train_help.md

    * Updates and bug fixes to click train detector and CPOD importer

    * Update click_train_help.md

    * Update click_train_help.md

    * Update click_train_help.md

    * Update click_train_help.md

    * Add screenshots for click train detector help

    * Screenshots

    * Update click_train_help.md

    * Defult option for CPOD and porpoise to click train detector.

    Also a minor

    * Updates to click train detector

    New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
    CPOD data can now build average waveforms.
    CPOD click trains can be viewed in TDisplayFX pop up menu displays
    Fixed Peak Frequency symbol chooser so it saves the colour box settings

    * Create click_train_help.md

    * Update click_train_help.md

    * Update click_train_help.md

    * Updates and bug fixes to click train detector and CPOD importer

    * Bug fix for raw spectrogram in TDDisplayFX

    * Update KetosClassifier.java

    * Fix standard classifier JSON logging

    * Fixed bug in sweep classifier when using SoundTrap click detections

    * Added some colour averaging in the TFDisplayFX spectrgoram

    * Bug fix for rainbow click bearings

    Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup

    * Google humpback whale deep learning classifier

    Google's humpback whale deep learning classifier can now be imported.
    Updated TDisplayFX to make the data selection panes cleaner and clearer.
    Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.

    * Updated the prediction plots on time display

    Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.

    * Updates to TDisplayFX

    yFIshmael now owrks with TDisplayFX
    TDisplayFX UI changes to make simpler.
    Some abstraction for drawing lines on TDisplayFX

    * Merge fixes to click train detector

    * Bug fix to UI

    * Updates to FX GUI

    * Updates to click train detector

    New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
    CPOD data can now build average waveforms.
    CPOD click trains can be viewed in TDisplayFX pop up menu displays
    Fixed Peak Frequency symbol chooser so it saves the colour box settings

    * Screenshots

    * Updates and bug fixes to click train detector and CPOD importer

    * Updates to click train detector

    New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
    CPOD data can now build average waveforms.
    CPOD click trains can be viewed in TDisplayFX pop up menu displays
    Fixed Peak Frequency symbol chooser so it saves the colour box settings

    * Updates and bug fixes to click train detector and CPOD importer

    * Fix standard classifier JSON logging

    * Merge fixes to click train detector

    * Updates to click train detector

    New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
    CPOD data can now build average waveforms.
    CPOD click trains can be viewed in TDisplayFX pop up menu displays
    Fixed Peak Frequency symbol chooser so it saves the colour box settings

    * Screenshots

    * Updates and bug fixes to click train detector and CPOD importer

    * Updates to click train detector

    New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
    CPOD data can now build average waveforms.
    CPOD click trains can be viewed in TDisplayFX pop up menu displays
    Fixed Peak Frequency symbol chooser so it saves the colour box settings

    * Screenshots

    * Updates and bug fixes to click train detector and CPOD importer

    * Fix standard classifier JSON logging

    * Google humpback whale deep learning classifier

    Google's humpback whale deep learning classifier can now be imported.
    Updated TDisplayFX to make the data selection panes cleaner and clearer.
    Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.

    * Bug fix to UI

    * Bug fixes to FX GUI

    * Updates to click train detector

    * Squashed commit of the following:

    commit 9f998165ee
    Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
    Date:   Mon May 2 19:40:24 2022 +0100

        Updates to support ContactCollator plugin (#33)

        * Change synchronization on RawDataTransforms soit uses the owner data
        holder, not itself for synchronization. Otherwise you get thread locks.

        * fix problem in SummaryComand

        * Update command line options

        * Change synchronization on RawDataTransforms soit uses the owner data
        holder, not itself for synchronization. Otherwise you get thread locks.

        * Update command line options

        * Update DecimatorParams.java

        * couple of updates to support new contact collator plugin

        * Sorting out sample rate info in clip display to support Contact Collator
        plugin

        * FLAC Speed

        Improve flac speed

        * Update .gitignore

        * Update .gitignore

        * Updates to support new features in Contact Collator

        * Small update to RawDatautils to handle null data

    * Updates to click train detector

    * Squashed commit of the following:

    commit 62b020b320
    Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
    Date:   Sat May 14 06:52:20 2022 +0100

        Add a new offlinefileslist function

    commit 3a9a5311aa
    Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
    Date:   Wed Apr 27 09:43:31 2022 +0100

        Update .gitignore

    commit 9f998165ee
    Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
    Date:   Mon May 2 19:40:24 2022 +0100

        Updates to support ContactCollator plugin (#33)

        * Change synchronization on RawDataTransforms soit uses the owner data
        holder, not itself for synchronization. Otherwise you get thread locks.

        * fix problem in SummaryComand

        * Update command line options

        * Change synchronization on RawDataTransforms soit uses the owner data
        holder, not itself for synchronization. Otherwise you get thread locks.

        * Update command line options

        * Update DecimatorParams.java

        * couple of updates to support new contact collator plugin

        * Sorting out sample rate info in clip display to support Contact Collator
        plugin

        * FLAC Speed

        Improve flac speed

        * Update .gitignore

        * Update .gitignore

        * Updates to support new features in Contact Collator

        * Small update to RawDatautils to handle null data

    * Updated data selector for click train detector

    * Click train detector updates and bug fixes

    Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing.

    Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify.

    Co-authored-by: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>

commit 7a08005ba8
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date:   Fri May 27 13:18:02 2022 +0100

    Sort out a couple of issues with scroll play mode timing

commit e2b48c8e07
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date:   Tue May 17 21:06:48 2022 +0100

    Changes to corner layout

commit 62b020b320
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date:   Sat May 14 06:52:20 2022 +0100

    Add a new offlinefileslist function

commit 3a9a5311aa
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date:   Wed Apr 27 09:43:31 2022 +0100

    Update .gitignore

commit 9f998165ee
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date:   Mon May 2 19:40:24 2022 +0100

    Updates to support ContactCollator plugin (#33)

    * Change synchronization on RawDataTransforms soit uses the owner data
    holder, not itself for synchronization. Otherwise you get thread locks.

    * fix problem in SummaryComand

    * Update command line options

    * Change synchronization on RawDataTransforms soit uses the owner data
    holder, not itself for synchronization. Otherwise you get thread locks.

    * Update command line options

    * Update DecimatorParams.java

    * couple of updates to support new contact collator plugin

    * Sorting out sample rate info in clip display to support Contact Collator
    plugin

    * FLAC Speed

    Improve flac speed

    * Update .gitignore

    * Update .gitignore

    * Updates to support new features in Contact Collator

    * Small update to RawDatautils to handle null data
2022-06-04 11:00:30 +01:00
..
readme.txt Adding a Maven build configuration to the repo to make life easier for 2022-02-04 16:45:17 +00:00

To build an executable jar file from the PAMGuard source using Eclipse, you need to use this build configuration
'Build PAMGuard.launch'
You cannot simply export the project as a runnable jar file, or you will not get the required Maven dependencies. 
To use this with Eclipse, from your workspace, select File, then import, then in the list of things to be imported select 
Run/Debug Launch Configurations, hit Next
Then in the Import Launch Configurations panel, browse to this folder. Select the folder (not a specific file)
then in the left panel, select the folder, then in the right panel the configuration you wish to import 
(i.e. Build PAMGuard.launch) and hit Finish
Then go to 'Run Configurations' and find the launch in the 'Maven Builds' section. You'll probably have to change the 
Base directory at the top of the panel to select the right project within your workspace. 
Once that's done, you can Run the configuration. It will take a while to get all the Maven dependencies and will output 
a runnable jar file into the 'targets' folder in your workspace. 
The name and version number of the created files are taken from the POM.xml file, so edit that if you want a different name.
For unknown reasons, it makes three files. They are all the same, you can delete the ones starting with 'original-' and 
ending with '-shared'