Commit Graph

18 Commits

Author SHA1 Message Date
Douglas Gillespie
32c7c9b263
Merge from Jamie (#143)
* Working on the exporter

* Working out on exporter

* Working on new symbol options for deep learning and sud file options in SoundAcquisition GUI

* Add zero pad option for sud files.

* Updates to sud zero pad options on FX GUI

* Implementing a data selector for the deep learning module

* Bug fix to data transforms if the wave data and sample length are different

* Updated POm to ignore test resources and updates to DL data selector

* Updates to DL data selector and POM

* Work on the data selector for the deep learning module.

* Working on the exporter

* Working out on exporter

* Working on new symbol options for deep learning and sud file options in SoundAcquisition GUI

* Add zero pad option for sud files.

* Updates to sud zero pad options on FX GUI

* Implementing a data selector for the deep learning module

* Updated POm to ignore test resources and updates to DL data selector

* Bug fix to data transforms if the wave data and sample length are different

* Updates to DL data selector and POM

* Work on the data selector for the deep learning module.

* Data selectors for deep learning models now working with FX

Still have to be implemented in Swing

* Update deep_learning_help.md

Updated help values to have some info on data selectors and symbol managers.

* Updates to deep learning symbol options for swing and data selector panel for swing

Made tooltips last longer on TD display  FX

* Update deep_learning_help.md

* Swing symbol modifiers for DL and peak freq

* Squashed commit of the following:

commit bad2255710
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date:   Thu Jul 18 09:47:47 2024 +0100

    Better symbol options

    Add clearer options button to multi option symbol manager panel.

* Fix bugs in detection display

* Bug fix to hiding panes

* Squashed commit of the following:

commit 8b5b5b2f18
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date:   Fri Jul 19 17:14:28 2024 +0100

    Updated data selectors for BT display

    Merging old status bar and new DataSelector options so that they work more consistently on the BT display.

commit bad2255710
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date:   Thu Jul 18 09:47:47 2024 +0100

    Better symbol options

    Add clearer options button to multi option symbol manager panel.

* Deep learning bug fix

* Ignore the class path

* Squashed commit of the following:

commit 577670ccd0
Merge: 6510d226 8b5b5b2f
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date:   Mon Jul 22 09:35:01 2024 +0100

    Merge branch 'main' of https://github.com/PAMGuard/PAMGuard

commit 6510d2260e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date:   Mon Jul 22 09:34:58 2024 +0100

    Remove unnecessary text output

commit 3da8401756
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date:   Mon Jul 22 09:29:38 2024 +0100

    updates to Daq

    New DLL, and some LED control, but hasn't fixed stalling problem.

commit 8b5b5b2f18
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date:   Fri Jul 19 17:14:28 2024 +0100

    Updated data selectors for BT display

    Merging old status bar and new DataSelector options so that they work more consistently on the BT display.

commit bad2255710
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date:   Thu Jul 18 09:47:47 2024 +0100

    Better symbol options

    Add clearer options button to multi option symbol manager panel.

* Squashed commit of the following:

commit 687220dad5
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date:   Mon Jul 22 11:42:19 2024 +0100

    Change click data selector

    Change Click BT display so it can handle CompoundDataSelectors

commit 577670ccd0
Merge: 6510d226 8b5b5b2f
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date:   Mon Jul 22 09:35:01 2024 +0100

    Merge branch 'main' of https://github.com/PAMGuard/PAMGuard

commit 6510d2260e
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date:   Mon Jul 22 09:34:58 2024 +0100

    Remove unnecessary text output

commit 3da8401756
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date:   Mon Jul 22 09:29:38 2024 +0100

    updates to Daq

    New DLL, and some LED control, but hasn't fixed stalling problem.

commit 8b5b5b2f18
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date:   Fri Jul 19 17:14:28 2024 +0100

    Updated data selectors for BT display

    Merging old status bar and new DataSelector options so that they work more consistently on the BT display.

commit bad2255710
Author: Douglas Gillespie <50671166+douggillespie@users.noreply.github.com>
Date:   Thu Jul 18 09:47:47 2024 +0100

    Better symbol options

    Add clearer options button to multi option symbol manager panel.

---------

Co-authored-by: Jamie Mac <macster110@gmail.com>
2024-07-22 11:55:06 +01:00
Douglas Gillespie
63b2572b8b fix metadata diaog
And also change class loader for plugins to not initialise classes since it causes an error if a plugin is depenent on a class in a plugin not yet loaded
2024-05-22 19:08:58 +01:00
Jamie Mac
1387428a32 Starting exporter and added new units tests for deep learning module. 2024-03-15 16:55:46 +00:00
Jamie Mac
db11658301 Matched click classifier and deep learning unit tests 2024-03-13 13:43:04 +00:00
Jamie Mac
aa6d289984 Add unit tests to deep learning and remove unwanted X3 libraries 2024-03-12 16:57:00 +00:00
Jamie Mac
791e09a2fd Updates to FX display 2024-03-01 17:04:44 +00:00
Jamie Mac
6314c90467 Get CPOD click train import working. 2024-02-14 14:27:11 +00:00
Jamie Mac
66fb82743b Updates to CPOD module
Display imporevements
2024-02-14 06:24:29 +00:00
Jamie Mac
68953d12fb Updates to FPOD and PAMGuardFX 2024-02-07 12:39:13 +00:00
Jamie Mac
9957bd3fa3 Implementing FPOD and updates to deep leanring module 2024-02-01 16:14:09 +00:00
Jamie Mac
25691563bf Update POM after rebase 2023-12-12 14:17:17 +00:00
Jamie Mac
137fa0e8ba Fix GPS bug in group localizer offline processing 2023-10-25 09:17:12 +01:00
Douglas Gillespie
25d31916b1 Fixes to ROCCA memory problem. See
https://github.com/PAMGuard/PAMGuard/issues/36
Made a temp build of this for testing.
2022-06-11 11:36:36 +01:00
Douglas Gillespie
9f998165ee
Updates to support ContactCollator plugin (#33)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.

* fix problem in SummaryComand

* Update command line options

* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.

* Update command line options

* Update DecimatorParams.java

* couple of updates to support new contact collator plugin

* Sorting out sample rate info in clip display to support Contact Collator
plugin

* FLAC Speed

Improve flac speed

* Update .gitignore

* Update .gitignore

* Updates to support new features in Contact Collator

* Small update to RawDatautils to handle null data
2022-05-02 19:40:24 +01:00
Jamie Mac
d85d9078a1
Bug fixes (#31)
* Updates to click train detector

New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings

* Screenshots

* Updates and bug fixes to click train detector and CPOD importer

* Updates to click train detector

New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings

* Updates and bug fixes to click train detector and CPOD importer

* Fix standard classifier JSON logging

* Merge fixes to click train detector

* Updates to click train detector

New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings

* Screenshots

* Updates and bug fixes to click train detector and CPOD importer

* Updates to click train detector

New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings

* Screenshots

* Updates and bug fixes to click train detector and CPOD importer

* Fix standard classifier JSON logging

* Google humpback whale deep learning classifier

Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.

* Bug fix to UI

* Updates to FX GUI

* Bug fixes

Click train detector now registers click train if there are no longer any click detections for a significant period of time.

Jitter in wrap spectrogram for TDisplayFX fixed

Deep learning module compatible with bearing localiser

Updates to FX GUI
2022-04-28 10:52:03 +01:00
Douglas Gillespie
c4ee5f389b
Contact Collator Updated (#30)
* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.

* fix problem in SummaryComand

* Update command line options

* Change synchronization on RawDataTransforms soit uses the owner data
holder, not itself for synchronization. Otherwise you get thread locks.

* Update command line options

* Update DecimatorParams.java

* couple of updates to support new contact collator plugin

* Sorting out sample rate info in clip display to support Contact Collator
plugin

* FLAC Speed

Improve flac speed

* Update .gitignore

* Update .gitignore

* Updates to support new features in Contact Collator
2022-04-27 09:34:27 +01:00
Jamie Mac
da387005a3
Click train, CPOD, Time Base Display, Ishmael updates and Google deep learning integration (#28)
* Updates to click train detector

New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings

* Create click_train_help.md

* Update click_train_help.md

* Screenshots

* Update click_train_help.md

* Update click_train_help.md

* Update click_train_help.md

* More screenshots

* Add screenshots

* Update click_train_help.md

* Add classifier screenshot

* Update click_train_help.md

* Update click_train_help.md

* Update click_train_help.md

* Updates and bug fixes to click train detector and CPOD importer

* Update click_train_help.md

* Update POM with latest jdl4pam

* Add screenshots for click train detector help

* Screenshots

* Update click_train_help.md

* Defult option for CPOD and porpoise to click train detector.

Also a minor

* Update pom.xml

* Bug fix for raw spectrogram in TDDisplayFX

* Update KetosClassifier.java

* Updates to click train detector

New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings

* Create click_train_help.md

* Update click_train_help.md

* Screenshots

* Update click_train_help.md

* More screenshots

* Update click_train_help.md

* Update click_train_help.md

* Add screenshots

* Add classifier screenshot

* Update click_train_help.md

* Updates and bug fixes to click train detector and CPOD importer

* Update click_train_help.md

* Update click_train_help.md

* Update click_train_help.md

* Update click_train_help.md

* Add screenshots for click train detector help

* Screenshots

* Update click_train_help.md

* Defult option for CPOD and porpoise to click train detector.

Also a minor

* Bug fix for raw spectrogram in TDDisplayFX

* Update KetosClassifier.java

* Fix standard classifier JSON logging

* Update click_train_help.md

* Fixed bug in sweep classifier when using SoundTrap click detections

* Added some colour averaging in the TFDisplayFX spectrgoram

* Bug fix for rainbow click bearings

Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup

* Google humpback whale deep learning classifier

Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.

* Updated the prediction plots on time display

Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.

* Updates to TDisplayFX

yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX

* Updates to click train detector

New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings

* Create click_train_help.md

* Update click_train_help.md

* Screenshots

* Update click_train_help.md

* More screenshots

* Update click_train_help.md

* Update click_train_help.md

* Add screenshots

* Add classifier screenshot

* Update click_train_help.md

* Updates and bug fixes to click train detector and CPOD importer

* Update click_train_help.md

* Update click_train_help.md

* Update click_train_help.md

* Update click_train_help.md

* Add screenshots for click train detector help

* Screenshots

* Update click_train_help.md

* Defult option for CPOD and porpoise to click train detector.

Also a minor

* Updates to click train detector

New GUI for click train classification - more intuitive and allows users to build more powerful classifiers.
CPOD data can now build average waveforms.
CPOD click trains can be viewed in TDisplayFX pop up menu displays
Fixed Peak Frequency symbol chooser so it saves the colour box settings

* Create click_train_help.md

* Update click_train_help.md

* Update click_train_help.md

* Updates and bug fixes to click train detector and CPOD importer

* Bug fix for raw spectrogram in TDDisplayFX

* Update KetosClassifier.java

* Fix standard classifier JSON logging

* Fixed bug in sweep classifier when using SoundTrap click detections

* Added some colour averaging in the TFDisplayFX spectrgoram

* Bug fix for rainbow click bearings

Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup

* Google humpback whale deep learning classifier

Google's humpback whale deep learning classifier can now be imported.
Updated TDisplayFX to make the data selection panes cleaner and clearer.
Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour.

* Updated the prediction plots on time display

Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend.

* Updates to TDisplayFX

yFIshmael now owrks with TDisplayFX
TDisplayFX UI changes to make simpler.
Some abstraction for drawing lines on TDisplayFX

* Merge fixes to click train detector

* Bug fix to UI
2022-04-20 12:27:21 +01:00
douggillespie
7d095c29b4 Commit PAMGuard code from SVN r6251 to GIT 2022-01-07 10:41:38 +00:00