TethysExportControl

add post to tethys code in TethysExportControl

src/tethys/dbxml/DBXMLConnect.java

@@ -1,6 +1,21 @@
 package tethys.dbxml;
 
+import java.io.IOException;
+import java.nio.file.Files;
+import java.util.List;
+
+import javax.xml.bind.JAXBException;
+
+import java.nio.file.Files;
+import java.nio.file.Path;
+
+import dbxml.uploader.Importer;
+import nilus.Deployment;
+import nilus.MarshalXML;
 import tethys.TethysControl;
+import tethys.output.TethysExportParams;
+import tethys.output.StreamExportParams;
+import PamguardMVC.PamDataBlock;
 
 /**
  * Class containing functions for managing the database connection. Opening, closing,
@@ -16,6 +31,80 @@ public class DBXMLConnect {
 		this.tethysControl = tethysControl;
 	}
 	
+	
+	/**
+	 * take list of nilus objects loaded with PamGuard data and post them to the Tethys database
+	 * all objects must be of the same nilus object
+	 * TethysExportParams obj used from UI inputs  
+	 * 
+	 * @param pamGuardObjs all nilus objects loaded with PamGuard data
+	 * @return error string, null string means there are no errors
+	 */
+	public String postToTethys(List<?> pamGuardObjs) 
+	{
+		Class objClass = pamGuardObjs.get(0).getClass();
+		String collection = getTethysCollection(objClass.getName());
+		PamDataBlock defaultPamBlock = null;
+		TethysExportParams params = new TethysExportParams();
+		String fileError = null;
+		try {
+			MarshalXML marshal = new MarshalXML();
+			marshal.createInstance(objClass);			
+			for (Object obj : pamGuardObjs ) 
+			{				
+				Path tempFile = Files.createTempFile("pamGuardToTethys", ".xml");
+				marshal.marshal(obj, tempFile.toString());
+				fileError = Importer.ImportFiles(params.getFullServerName(), collection,
+						new String[] { tempFile.toString() }, "", "", false);
+
+				System.out.println(fileError);
+				
+				tempFile.toFile().deleteOnExit();
+			}
+		} catch(IllegalArgumentException e) {
+			// TODO Auto-generated catch block
+			e.printStackTrace();
+		} catch (IOException e) {
+			// TODO Auto-generated catch block
+			e.printStackTrace();
+		} catch (JAXBException e) {
+			// TODO Auto-generated catch block
+			e.printStackTrace();
+		}	
+		
+		return fileError;
+	}
+	
+	/**
+	 * get tethys collection name from nilus collection objects
+	 * @param className nilus object Class Name
+	 * @return name of Tethys collection
+	 */
+	private String getTethysCollection(String className) {
+		switch(className) {
+			case "nilus.Deployment": 
+				return "Deployments";				
+			case "nilus.Detection": 
+				return "Detections";
+			case "nilus.Calibration": 
+				return "Calibrations";				
+			case "nilus.Ensemble": 
+				return "Ensembles";			
+			case "nilus.Localization": 
+				return "Localizations";				
+			case "nilus.SpeciesAbbreviation": 
+				return "SpeciesAbbreviations";				
+			case "nilus.SourceMap": 
+				return "SourceMaps";				
+			case "nilus.ITIS": 
+				return "ITIS";							
+			case "nilus.ranks": 
+				return "ITIS_ranks";
+			default: 
+				return "";									
+		}
+	}
+	
 	public boolean openDatabase() {
 		
 		return true;

src/tethys/deployment/DeploymentHandler.java

@@ -141,7 +141,7 @@ public class DeploymentHandler {
 		}
 		double[] ons = new double[n-1]; // ignore the last one since it may be artificially shortened which is OK
 		double[] gaps = new double[n-1];
-		for (int i = 0; i < n; i++) {
+		for (int i = 0; i < n-1; i++) {
 			ons[i] = tempPeriods.get(i).getDuration();
 		}
 		return null;

src/tethys/detection/DetectionsHandler.java

@@ -166,7 +166,7 @@ public class DetectionsHandler {
 		 * We should now have a fully populated Detections object, so write it to the database
 		 * using functions in DBXMLConnect 
 		 */
-		tethysControl.getDbxmlConnect(); // call whatever you need to call in here to write the Detections. 
+		//tethysControl.getDbxmlConnect().postToTethys(detectionList); // call whatever you need to call in here to write the Detections. 
 		
 		
 		return true;

src/tethys/output/TethysExportParams.java

@@ -2,9 +2,9 @@ package tethys.output;
 
 import java.io.Serializable;
 import java.util.HashMap;
-
 import PamguardMVC.PamDataBlock;
 
+
 /**
  * Parameters for controlling export of Tethys data. 
  * @author dg50
@@ -18,6 +18,13 @@ public class TethysExportParams implements Serializable, Cloneable{
 	 * Need to add lots of other parameters here, such as the connection detils
 	 * for the tethys database. 
 	 */
+	public String serverName = "http://localhost";
+	
+	public String port = "9779";
+	
+	public String getFullServerName() {
+		return serverName + ":" + port;			
+	}
 	
 	private HashMap<String, StreamExportParams> streamParamsMap = new HashMap();
 

src/tethys/output/TethysExporter.java

@@ -30,7 +30,6 @@ import dbxml.uploader.Importer;
 import metadata.MetaDataContol;
 import metadata.deployment.DeploymentData;
 import nilus.Deployment;
-import nilus.MarshalXML;
 import tethys.TethysControl;
 import tethys.dbxml.DBXMLConnect;
 import tethys.deployment.DeploymentHandler;
@@ -84,35 +83,6 @@ public class TethysExporter {
 		// return false;
 		// }
 				
-		Deployment deployment1 = new Deployment();
-		deployment1.setId("1");
-
-		Path tempFile = null;
-		try {
-			
-			MarshalXML marshal = new MarshalXML();
-			marshal.createInstance(Deployment.class);	
-			tempFile = Files.createTempFile("pamGuardToTethys", ".xml");
-			marshal.marshal(deployment1, tempFile.toString());
-			String fileError = Importer.ImportFiles("http://localhost:9779", "Deployments",
-					new String[] { tempFile.toString() }, "", "", false);
-
-			tempFile.toFile().deleteOnExit();
-
-		} catch(IllegalArgumentException e) {
-			// TODO Auto-generated catch block
-			e.printStackTrace();
-		} catch (IOException e) {
-			// TODO Auto-generated catch block
-			e.printStackTrace();
-		} catch (JAXBException e) {
-			// TODO Auto-generated catch block
-			e.printStackTrace();
-		}
-
-		
-		SnapshotGeometry arrayGeometry = findArrayGeometrey();
-
 		/**
 		 * Doug populate instrument fields - may need to add a few things. Marie to
 		 * define what we mean by instrument. Instrument names probably need to be added
@@ -218,7 +188,7 @@ public class TethysExporter {
 
 		}
 
-		
+		tethysControl.getDbxmlConnect().postToTethys(deploymentDocs);
 
 		/*
 		 * go through the export params and call something for every data block that's