mirror of
https://github.com/PAMGuard/PAMGuard.git
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Merge branch 'main' of https://github.com/douggillespie/PAMGuard into main
This commit is contained in:
Douglas Gillespie
commit
ef92e1eea9
@ -4,7 +4,7 @@
|
||||
<groupId>org.pamguard</groupId>
|
||||
<artifactId>Pamguard</artifactId>
|
||||
<name>Pamguard Java12+</name>
|
||||
<version>2.02.09b</version>
|
||||
<version>2.02.09c</version>
|
||||
<description>Pamguard for Java 12+, using Maven to control dependcies</description>
|
||||
<url>www.pamguard.org</url>
|
||||
<organization>
|
||||
|
||||
4
pom.xml
4
pom.xml
@ -4,7 +4,7 @@
|
||||
<modelVersion>4.0.0</modelVersion>
|
||||
<groupId>org.pamguard</groupId>
|
||||
<artifactId>Pamguard</artifactId>
|
||||
<version>2.02.09b</version>
|
||||
<version>2.02.09d</version>
|
||||
<name>Pamguard Java12+</name>
|
||||
<description>Pamguard for Java 12+, using Maven to control dependcies</description>
|
||||
<url>www.pamguard.org</url>
|
||||
@ -807,7 +807,7 @@ C:\Users\*yourusername*\.m2\repository\pamguard\org\x3\2.2.2-->
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||||
<dependency>
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||||
<groupId>pamguard.org</groupId>
|
||||
<artifactId>x3</artifactId>
|
||||
<version>2.2.3</version>
|
||||
<version>2.2.6</version>
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||||
</dependency>
|
||||
|
||||
|
||||
|
||||
4
repo/pamguard/org/x3/2.2.6/_remote.repositories
Normal file
4
repo/pamguard/org/x3/2.2.6/_remote.repositories
Normal file
@ -0,0 +1,4 @@
|
||||
#NOTE: This is a Maven Resolver internal implementation file, its format can be changed without prior notice.
|
||||
#Wed Nov 15 12:43:42 GMT 2023
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x3-2.2.6.jar>=
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||||
x3-2.2.6.pom>=
|
||||
BIN
repo/pamguard/org/x3/2.2.6/x3-2.2.6.jar
Normal file
BIN
repo/pamguard/org/x3/2.2.6/x3-2.2.6.jar
Normal file
Binary file not shown.
9
repo/pamguard/org/x3/2.2.6/x3-2.2.6.pom
Normal file
9
repo/pamguard/org/x3/2.2.6/x3-2.2.6.pom
Normal file
@ -0,0 +1,9 @@
|
||||
<?xml version="1.0" encoding="UTF-8"?>
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||||
<project xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 https://maven.apache.org/xsd/maven-4.0.0.xsd" xmlns="http://maven.apache.org/POM/4.0.0"
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xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
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<modelVersion>4.0.0</modelVersion>
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<groupId>pamguard.org</groupId>
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||||
<artifactId>x3</artifactId>
|
||||
<version>2.2.6</version>
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||||
<description>POM was created from install:install-file</description>
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||||
</project>
|
||||
@ -398,7 +398,7 @@ public class AcquisitionControl extends RawInputControlledUnit implements PamSet
|
||||
message += "\n\nFailure to do so may result in PAMGUARD crashing or features not working correctly";
|
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int ans = JOptionPane.showConfirmDialog(parentFrame, message, getArrayErrorMessage(error), JOptionPane.YES_NO_OPTION);
|
||||
if (ans == JOptionPane.YES_OPTION) {
|
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ArrayManager.getArrayManager().showArrayDialog(getPamView().getGuiFrame());
|
||||
ArrayManager.getArrayManager().showArrayDialog(getGuiFrame());
|
||||
return checkArrayChannels(parentFrame);
|
||||
}
|
||||
|
||||
|
||||
@ -7,57 +7,214 @@ import java.util.Arrays;
|
||||
|
||||
import javax.sound.sampled.AudioInputStream;
|
||||
import javax.sound.sampled.UnsupportedAudioFileException;
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||||
import javax.swing.SwingUtilities;
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|
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import org.pamguard.x3.sud.ChunkHeader;
|
||||
import org.pamguard.x3.sud.SudMapListener;
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|
||||
import PamController.PamController;
|
||||
import PamUtils.worker.PamWorkProgressMessage;
|
||||
import PamUtils.worker.PamWorkWrapper;
|
||||
import PamUtils.worker.PamWorker;
|
||||
|
||||
/**
|
||||
* Opens a .sud audio file.
|
||||
* <p>
|
||||
* Sud files contain X3 compressed audio data. The sud
|
||||
* file reader opens files, creating a map of the file and saving
|
||||
* the map as a.sudx file so it can be read more rapidly when the file
|
||||
* is next accessed.
|
||||
* Sud files contain X3 compressed audio data. The sud file reader opens files,
|
||||
* creating a map of the file and saving the map as a.sudx file so it can be
|
||||
* read more rapidly when the file is next accessed.
|
||||
* <p>
|
||||
* The SudioAudioInput stream fully implements AudioInputStream and so
|
||||
* sud files can be accessed using much of the same code as .wav files.
|
||||
*
|
||||
* The SudioAudioInput stream fully implements AudioInputStream and so sud files
|
||||
* can be accessed using much of the same code as .wav files.
|
||||
*
|
||||
* @author Jamie Macaulay
|
||||
*
|
||||
*/
|
||||
public class SudAudioFile extends WavAudioFile {
|
||||
|
||||
|
||||
|
||||
private Object conditionSync = new Object();
|
||||
|
||||
private volatile PamWorker<AudioInputStream> worker;
|
||||
private volatile SudMapWorker sudMapWorker;
|
||||
|
||||
public SudAudioFile() {
|
||||
super();
|
||||
fileExtensions = new ArrayList<String>(Arrays.asList(new String[]{".sud"}));
|
||||
super();
|
||||
fileExtensions = new ArrayList<String>(Arrays.asList(new String[] { ".sud" }));
|
||||
}
|
||||
|
||||
@Override
|
||||
public String getName() {
|
||||
return "SUD";
|
||||
}
|
||||
|
||||
|
||||
|
||||
@Override
|
||||
public AudioInputStream getAudioStream(File soundFile) {
|
||||
if (soundFile.exists() == false) {
|
||||
System.err.println("The sud file does not exist: " + soundFile);
|
||||
return null;
|
||||
}
|
||||
if (soundFile != null) {
|
||||
try {
|
||||
return new SudAudioFileReader().getAudioInputStream(soundFile);
|
||||
}
|
||||
// don't do anything and it will try the built in Audiosystem
|
||||
catch (UnsupportedAudioFileException e) {
|
||||
System.err.println("UnsupportedAudioFileException: Could not open sud file: not a supported file " + soundFile.getName());
|
||||
System.err.println(e.getMessage());
|
||||
// e.printStackTrace();
|
||||
} catch (IOException e) {
|
||||
System.err.println("Could not open sud file: IO Exception: " + soundFile.getName());
|
||||
|
||||
e.printStackTrace();
|
||||
synchronized (conditionSync) {
|
||||
|
||||
// System.out.println("Get SUD getAudioStream : " + soundFile.getName());
|
||||
|
||||
if (soundFile.exists() == false) {
|
||||
System.err.println("The sud file does not exist: " + soundFile);
|
||||
return null;
|
||||
}
|
||||
if (soundFile != null) {
|
||||
|
||||
if (new File(soundFile.getAbsolutePath() + "x").exists()) {
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||||
// System.out.println("----NO NEED TO MAP SUD FILE-----" + soundFile);
|
||||
try {
|
||||
return new SudAudioFileReader().getAudioInputStream(soundFile);
|
||||
} catch (UnsupportedAudioFileException | IOException e) {
|
||||
// TODO Auto-generated catch block
|
||||
e.printStackTrace();
|
||||
}
|
||||
} else {
|
||||
|
||||
// System.out.println("----MAP SUD FILE ON OTHER THREAD-----" + soundFile);
|
||||
|
||||
/**
|
||||
* We need to map the sud file. But we don't want this o just freeze the current
|
||||
* GUI thread. Therefore add a listener to the mapping process and show a
|
||||
* blocking dialog to indicate that something is happening. The mapping is put
|
||||
* on a separate thread and blocks stuff from happening until the mapping
|
||||
* process has completed.
|
||||
*/
|
||||
if (sudMapWorker == null || !sudMapWorker.getSudFile().equals(soundFile)) {
|
||||
|
||||
sudMapWorker = new SudMapWorker(soundFile);
|
||||
worker = new PamWorker<AudioInputStream>(sudMapWorker,
|
||||
PamController.getInstance().getMainFrame(), 1,
|
||||
"Mapping sud file: " + soundFile.getName());
|
||||
// System.out.println("Sud Audio Stream STARTED: " + soundFile.getName());
|
||||
|
||||
SwingUtilities.invokeLater(() -> {
|
||||
worker.start();
|
||||
});
|
||||
// this should block AWT thread but won't block if called on another thread..
|
||||
}
|
||||
|
||||
// this is only ever called if this function is called on another thread other
|
||||
// than the event dispatch thread.
|
||||
while (sudMapWorker == null || !sudMapWorker.isDone()) {
|
||||
// do nothing
|
||||
// System.out.println("Waiting for the SUD file map: " + soundFile.getName() + " worker: " + worker);
|
||||
try {
|
||||
// Thread.sleep(100);
|
||||
Thread.sleep(100);
|
||||
} catch (InterruptedException e) {
|
||||
// TODO Auto-generated catch block
|
||||
e.printStackTrace();
|
||||
}
|
||||
}
|
||||
|
||||
AudioInputStream stream = sudMapWorker.getSudAudioStream();
|
||||
|
||||
// sudMapWorker= null;
|
||||
// worker = null;
|
||||
|
||||
// System.out.println("----RETURN SUD FILE ON OTHER THREAD-----" + stream);
|
||||
|
||||
return stream;
|
||||
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
return null;
|
||||
}
|
||||
|
||||
}
|
||||
public class SudMapProgress implements SudMapListener {
|
||||
|
||||
PamWorker<AudioInputStream> sudMapWorker;
|
||||
|
||||
public SudMapProgress(PamWorker<AudioInputStream> sudMapWorker) {
|
||||
this.sudMapWorker = sudMapWorker;
|
||||
}
|
||||
|
||||
@Override
|
||||
public void chunkProcessed(ChunkHeader chunkHeader, int count) {
|
||||
// System.out.println("Sud Map Progress: " + count);
|
||||
if (count % 500 == 0) {
|
||||
// don't update too often or everything just freezes
|
||||
sudMapWorker.update(new PamWorkProgressMessage(-1, ("Mapped " + count + " sud file chunks")));
|
||||
}
|
||||
if (count == -1) {
|
||||
sudMapWorker.update(new PamWorkProgressMessage(-1, ("Mapping sud file finished")));
|
||||
}
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
/**
|
||||
* Opens an sud file on a different thread and adds a listener for a mapping.
|
||||
* This allows a callback to show map progress.
|
||||
*
|
||||
* @author Jamie Macaulay
|
||||
*
|
||||
*/
|
||||
public class SudMapWorker implements PamWorkWrapper<AudioInputStream> {
|
||||
|
||||
private File soundFile;
|
||||
|
||||
private SudMapProgress sudMapListener;
|
||||
|
||||
private volatile boolean done = false;
|
||||
|
||||
private AudioInputStream result;
|
||||
|
||||
public SudMapWorker(File soundFile) {
|
||||
this.soundFile = soundFile;
|
||||
}
|
||||
|
||||
public File getSudFile() {
|
||||
return soundFile;
|
||||
}
|
||||
|
||||
public AudioInputStream getSudAudioStream() {
|
||||
return result;
|
||||
}
|
||||
|
||||
@Override
|
||||
public AudioInputStream runBackgroundTask(PamWorker<AudioInputStream> pamWorker) {
|
||||
AudioInputStream stream;
|
||||
try {
|
||||
// System.out.println("START OPEN SUD FILE:");
|
||||
|
||||
this.sudMapListener = new SudMapProgress(pamWorker);
|
||||
stream = new SudAudioFileReader().getAudioInputStream(soundFile, sudMapListener);
|
||||
|
||||
// System.out.println("END SUD FILE:");
|
||||
|
||||
// for some reason - task finished may not be called on other
|
||||
// thread so put this here.
|
||||
this.result = stream;
|
||||
this.done = true;
|
||||
|
||||
return stream;
|
||||
} catch (UnsupportedAudioFileException e) {
|
||||
System.err.println("UnsupportedAudioFileException: Could not open sud file: not a supported file "
|
||||
+ soundFile.getName());
|
||||
System.err.println(e.getMessage());
|
||||
// e.printStackTrace();
|
||||
} catch (IOException e) {
|
||||
System.err.println("Could not open sud file: IO Exception: " + soundFile.getName());
|
||||
|
||||
e.printStackTrace();
|
||||
}
|
||||
return null;
|
||||
}
|
||||
|
||||
@Override
|
||||
public void taskFinished(AudioInputStream result) {
|
||||
// System.out.println("TASK FINSIHED:");
|
||||
this.result = result;
|
||||
this.done = true;
|
||||
}
|
||||
|
||||
public boolean isDone() {
|
||||
return done;
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
@ -27,13 +27,14 @@ public class SudAudioFileReader {
|
||||
|
||||
|
||||
public SudAudioFileReader() {
|
||||
sudParams = new SudParams();
|
||||
//set up the sud params for default. i.e. just read files and
|
||||
//don't save any decompressed or meta data.
|
||||
sudParams.saveWav = false;
|
||||
sudParams.saveMeta = false;
|
||||
sudParams.zeroPad = true;
|
||||
}
|
||||
sudParams = new SudParams();
|
||||
//set up the sud params for default. i.e. just read files and
|
||||
//don't save any decompressed or meta data.
|
||||
// sudParams.saveWav = false;
|
||||
// sudParams.saveMeta = false;
|
||||
sudParams.setFileSave(false, false, false, false);
|
||||
sudParams.zeroPad = true;
|
||||
}
|
||||
|
||||
/**
|
||||
* Get the audio input streamn.
|
||||
@ -51,5 +52,25 @@ public class SudAudioFileReader {
|
||||
}
|
||||
return sudAudioInputStream;
|
||||
}
|
||||
/**
|
||||
* Get the audio input stream for a sud file.
|
||||
* @param file - the .sud file to open.
|
||||
* @param mapListener- a listener for the sud file maps - can be null.
|
||||
* @return the sud AudioStream.
|
||||
* @throws UnsupportedAudioFileException
|
||||
* @throws IOException
|
||||
*/
|
||||
public AudioInputStream getAudioInputStream(File file, SudMapListener mapListener) throws UnsupportedAudioFileException, IOException {
|
||||
|
||||
// System.out.println("Get SUD getAudioInputStream");
|
||||
|
||||
try {
|
||||
sudAudioInputStream = SudAudioInputStream.openInputStream(file, sudParams, mapListener, false);
|
||||
} catch (Exception e) {
|
||||
String msg = String.format("Corrupt sud file %s: %s", file.getName(), e.getMessage());
|
||||
throw new UnsupportedAudioFileException(msg);
|
||||
}
|
||||
return sudAudioInputStream;
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
@ -1,18 +1,12 @@
|
||||
package Acquisition.sud;
|
||||
|
||||
|
||||
import java.io.File;
|
||||
|
||||
import org.pamguard.x3.sud.ChunkHeader;
|
||||
|
||||
import org.pamguard.x3.sud.SudAudioInputStream;
|
||||
import org.pamguard.x3.sud.SudFileMap;
|
||||
import org.pamguard.x3.sud.SudParams;
|
||||
|
||||
import PamUtils.PamCalendar;
|
||||
|
||||
|
||||
public class SUDFileTime {
|
||||
|
||||
|
||||
private static long sudTime;
|
||||
|
||||
private static String lastFilePath = "";
|
||||
/**
|
||||
* Temp measure to get the time from the first available sud record.
|
||||
@ -20,6 +14,7 @@ public class SUDFileTime {
|
||||
* @return
|
||||
*/
|
||||
public static long getSUDFileTime(File file) {
|
||||
//System.out.println("Get sud file time: " + file.getName());
|
||||
if (file == null || file.exists() == false) {
|
||||
return Long.MIN_VALUE;
|
||||
}
|
||||
@ -36,22 +31,26 @@ public class SUDFileTime {
|
||||
*/
|
||||
// long t1 = System.currentTimeMillis();
|
||||
sudTime = Long.MIN_VALUE;
|
||||
SudParams sudParams = new SudParams();
|
||||
sudParams.saveMeta = false;
|
||||
sudParams.saveWav = false;
|
||||
// SudParams sudParams = new SudParams();
|
||||
// sudParams.saveMeta = false;
|
||||
// sudParams.saveWav = false;
|
||||
try {
|
||||
SudAudioInputStream sudAudioInputStream = SudAudioInputStream.openInputStream(file, sudParams, false);
|
||||
if (sudAudioInputStream == null) {
|
||||
return Long.MIN_VALUE;
|
||||
}
|
||||
SudFileMap sudMap = sudAudioInputStream.getSudMap();
|
||||
if (sudMap == null) {
|
||||
return Long.MIN_VALUE;
|
||||
}
|
||||
long t = sudMap.getFirstChunkTimeMillis();
|
||||
//
|
||||
// SudAudioInputStream sudAudioInputStream = SudAudioInputStream.openInputStream(file, sudParams, false);
|
||||
// if (sudAudioInputStream == null) {
|
||||
// return Long.MIN_VALUE;
|
||||
// }
|
||||
// SudFileMap sudMap = sudAudioInputStream.getSudMap();
|
||||
// if (sudMap == null) {
|
||||
// return Long.MIN_VALUE;
|
||||
// }
|
||||
// long t = sudMap.getFirstChunkTimeMillis();
|
||||
long t = SudAudioInputStream.quickFileTime(file);
|
||||
t=t/1000; //turn to milliseconds.
|
||||
if (t != 0) {
|
||||
sudTime = t;
|
||||
}
|
||||
|
||||
// sudAudioInputStream.addSudFileListener((chunkID, sudChunk)->{
|
||||
// ChunkHeader chunkHead = sudChunk.chunkHeader;
|
||||
// if (chunkHead == null || sudTime != Long.MIN_VALUE) {
|
||||
@ -70,17 +69,16 @@ public class SUDFileTime {
|
||||
// sudAudioInputStream.read();
|
||||
// }
|
||||
//
|
||||
sudAudioInputStream.close();
|
||||
// sudAudioInputStream.close();
|
||||
// long t2 = System.currentTimeMillis();
|
||||
// System.out.printf("SUD file time %s extracted in %d milliseconds\n", PamCalendar.formatDBDateTime(sudTime), t2-t1);
|
||||
|
||||
} catch (Exception e) {
|
||||
System.err.println("Error getting time from SUD file: " + e.getMessage());
|
||||
System.err.println("Error getting time from SUD file: " + file + " " + e.getMessage());
|
||||
e.printStackTrace();
|
||||
}
|
||||
|
||||
return sudTime;
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
@ -73,7 +73,7 @@ public class IMUControl extends PamControlledUnit implements PamSettings {
|
||||
}
|
||||
|
||||
public void actionPerformed(ActionEvent e) {
|
||||
IMUSettingsDialog.showDialog(getPamView().getGuiFrame(),THIS);
|
||||
IMUSettingsDialog.showDialog(getGuiFrame(),THIS);
|
||||
}
|
||||
}
|
||||
|
||||
@ -89,7 +89,7 @@ public class IMUControl extends PamControlledUnit implements PamSettings {
|
||||
}
|
||||
|
||||
public void actionPerformed(ActionEvent e) {
|
||||
IMUParams newIMUParams=IMUImportDialog.showDialog(getPamView().getGuiFrame(),THIS, importCSV);
|
||||
IMUParams newIMUParams=IMUImportDialog.showDialog(getGuiFrame(),THIS, importCSV);
|
||||
//if params are not null try and load data
|
||||
if (newIMUParams!=null){
|
||||
imuParams=newIMUParams;
|
||||
@ -115,7 +115,7 @@ public class IMUControl extends PamControlledUnit implements PamSettings {
|
||||
}
|
||||
|
||||
public void actionPerformed(ActionEvent e) {
|
||||
IMUParams newIMUParams=IMUCalibrationDialog.showDialog(getPamView().getGuiFrame(),imuParams);
|
||||
IMUParams newIMUParams=IMUCalibrationDialog.showDialog(getGuiFrame(),imuParams);
|
||||
if (newIMUParams!=null) imuParams=newIMUParams;
|
||||
updateProcesses(CAL_VALUES_CHANGED);
|
||||
}
|
||||
|
||||
@ -91,7 +91,7 @@ public class IMUImportDialog extends PamDialog{
|
||||
}
|
||||
else dir=null;
|
||||
|
||||
String newFile=PamFileBrowser.csvFileBrowser(imuControl.getPamView().getGuiFrame(),dir,PamFileBrowser.OPEN_FILE);
|
||||
String newFile=PamFileBrowser.csvFileBrowser(imuControl.getGuiFrame(),dir,PamFileBrowser.OPEN_FILE);
|
||||
|
||||
addNewFileToList( newFile);
|
||||
|
||||
|
||||
@ -23,6 +23,7 @@ package Map;
|
||||
import java.awt.BasicStroke;
|
||||
import java.awt.Color;
|
||||
import java.awt.Cursor;
|
||||
import java.awt.Frame;
|
||||
import java.awt.Graphics;
|
||||
import java.awt.Graphics2D;
|
||||
import java.awt.MouseInfo;
|
||||
@ -1636,9 +1637,9 @@ public class MapPanel extends JPanelWithPamKey implements PamObserver, ColorMana
|
||||
class OverlayOptions implements ActionListener {
|
||||
|
||||
public void actionPerformed(ActionEvent e) {
|
||||
JFrame frame = (JFrame) PamController.getMainFrame();
|
||||
Frame frame = (JFrame) PamController.getMainFrame();
|
||||
if (mapController.getPamView() != null) {
|
||||
frame = mapController.getPamView().getGuiFrame();
|
||||
frame = mapController.getGuiFrame();
|
||||
}
|
||||
|
||||
MapDetectionsParameters newParams = MapDetectionsDialog.showDialog(frame,
|
||||
|
||||
549
src/PamController/PamConfiguration.java
Normal file
549
src/PamController/PamConfiguration.java
Normal file
@ -0,0 +1,549 @@
|
||||
package PamController;
|
||||
|
||||
import java.io.File;
|
||||
import java.io.Serializable;
|
||||
import java.util.ArrayList;
|
||||
|
||||
import Array.ArrayManager;
|
||||
import PamController.settings.output.xml.PamguardXMLWriter;
|
||||
import PamDetection.PamDetection;
|
||||
import PamDetection.RawDataUnit;
|
||||
import PamView.GeneralProjector;
|
||||
import PamView.PanelOverlayDraw;
|
||||
import PamguardMVC.PamDataBlock;
|
||||
import PamguardMVC.PamDataUnit;
|
||||
import PamguardMVC.PamProcess;
|
||||
import PamguardMVC.PamRawDataBlock;
|
||||
import binaryFileStorage.BinaryStore;
|
||||
import fftManager.FFTDataBlock;
|
||||
import fftManager.FFTDataUnit;
|
||||
import offlineProcessing.OfflineTask;
|
||||
import offlineProcessing.OfflineTaskGroup;
|
||||
|
||||
/**
|
||||
* Class to take all of the configuration information out of PamController. This
|
||||
* is because PamController is a singleton class, so there can only every be one of
|
||||
* them, but for some of the batch processing control, we need to be able to load and
|
||||
* manipulate a second set of modules, which do nothing within the running
|
||||
* configuration, but are there to allow us to set up a configuration to send to
|
||||
* other batch processes in viewer mode.
|
||||
* @author dg50
|
||||
*
|
||||
*/
|
||||
public class PamConfiguration {
|
||||
|
||||
/**
|
||||
* List of the current controlled units (PAMGuard modules)
|
||||
*/
|
||||
private ArrayList<PamControlledUnit> pamControlledUnits;
|
||||
|
||||
public PamConfiguration() {
|
||||
super();
|
||||
|
||||
// create the array list to hold multiple views
|
||||
pamControlledUnits = new ArrayList<PamControlledUnit>();
|
||||
}
|
||||
|
||||
/**
|
||||
* Call setupControlledUnit() on all modules.
|
||||
*/
|
||||
public void setupProcesses() {
|
||||
for (int i = 0; i < pamControlledUnits.size(); i++) {
|
||||
pamControlledUnits.get(i).setupControlledUnit();
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* Can PAMGUARD shut down. This question is asked in turn to
|
||||
* every module. Each module should attempt to make sure it can
|
||||
* answer true, e.g. by closing files, but if any module
|
||||
* returns false, then canClose() will return false;
|
||||
* @return whether it's possible to close PAMGUARD
|
||||
* without corrupting or losing data.
|
||||
*/
|
||||
public boolean canClose() {
|
||||
for (int i = 0; i < pamControlledUnits.size(); i++) {
|
||||
if (pamControlledUnits.get(i).canClose() == false) {
|
||||
return false;
|
||||
}
|
||||
}
|
||||
return true;
|
||||
}
|
||||
|
||||
/**
|
||||
* Called after canClose has returned true to finally tell
|
||||
* all modules that PAMGUARD is definitely closing down.so they
|
||||
* can free any resources, etc.
|
||||
*/
|
||||
public void pamClose() {
|
||||
|
||||
|
||||
for (int i = 0; i < pamControlledUnits.size(); i++) {
|
||||
pamControlledUnits.get(i).pamClose();
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* @return the pamControlledUnits
|
||||
*/
|
||||
public ArrayList<PamControlledUnit> getPamControlledUnits() {
|
||||
return pamControlledUnits;
|
||||
}
|
||||
|
||||
/**
|
||||
* Add a PamControlledUnit to the main list.
|
||||
* @param controlledUnit
|
||||
*/
|
||||
public void addControlledUnit(PamControlledUnit controlledUnit) {
|
||||
pamControlledUnits.add(controlledUnit);
|
||||
}
|
||||
|
||||
public boolean removeControlledUnt(PamControlledUnit controlledUnit) {
|
||||
|
||||
boolean removed = false;
|
||||
while (pamControlledUnits.contains(controlledUnit)) {
|
||||
pamControlledUnits.remove(controlledUnit);
|
||||
removed = true;
|
||||
}
|
||||
return removed;
|
||||
// getMainFrame().revalidate(); //handled inside the GUIFrameManager by notify model changed. The controller should have
|
||||
//as few direct GUI calls as possible.
|
||||
}
|
||||
|
||||
/**
|
||||
* re-order the modules according to the given list.
|
||||
* @param newOrder
|
||||
* @return
|
||||
*/
|
||||
public boolean reOrderModules(int[] newOrder) {
|
||||
|
||||
if (pamControlledUnits.size() != newOrder.length) return false;
|
||||
|
||||
ArrayList<PamControlledUnit> newList = new ArrayList<PamControlledUnit>();
|
||||
|
||||
for (int i = 0; i < newOrder.length; i++) {
|
||||
|
||||
newList.add(pamControlledUnits.get(newOrder[i]));
|
||||
|
||||
}
|
||||
|
||||
pamControlledUnits = newList;
|
||||
|
||||
return true;
|
||||
}
|
||||
|
||||
public PamControlledUnit getControlledUnit(int iUnit) {
|
||||
if (iUnit < getNumControlledUnits()) {
|
||||
return pamControlledUnits.get(iUnit);
|
||||
}
|
||||
return null;
|
||||
}
|
||||
|
||||
public PamControlledUnit findControlledUnit(String unitType) {
|
||||
for (int i = 0; i < getNumControlledUnits(); i++) {
|
||||
if (pamControlledUnits.get(i).getUnitType().equalsIgnoreCase(unitType)) {
|
||||
return pamControlledUnits.get(i);
|
||||
}
|
||||
}
|
||||
return null;
|
||||
}
|
||||
|
||||
public int getNumControlledUnits() {
|
||||
return pamControlledUnits.size();
|
||||
}
|
||||
|
||||
public PamRawDataBlock getRawDataBlock(int id) {
|
||||
return (PamRawDataBlock) getDataBlock(RawDataUnit.class, id);
|
||||
}
|
||||
|
||||
public PamRawDataBlock getRawDataBlock(String name) {
|
||||
return (PamRawDataBlock) getDataBlock(RawDataUnit.class, name);
|
||||
}
|
||||
|
||||
/**
|
||||
* Find a block of a given type with the given name, or null if it
|
||||
* doesn't exist.
|
||||
* @param blockType -- RAW, FFT, DETECTOR, null, etc.
|
||||
* @param name -- the block name
|
||||
* @return block, which you may want to cast to a subtype
|
||||
*/
|
||||
public PamDataBlock getDataBlock(Class blockType, String name) {
|
||||
if (name == null) return null;
|
||||
ArrayList<PamDataBlock> blocks = getDataBlocks(blockType, true);
|
||||
for (PamDataBlock dataBlock:blocks) {
|
||||
if (name.equals(dataBlock.getLongDataName())) { // check for a long name match first
|
||||
return dataBlock;
|
||||
}
|
||||
if (dataBlock instanceof FFTDataBlock) {
|
||||
FFTDataBlock fb = (FFTDataBlock) dataBlock;
|
||||
if (name.equals(fb.getOldLongDataName())) {
|
||||
return dataBlock;
|
||||
}
|
||||
}
|
||||
if (name.equals(dataBlock.toString())) {
|
||||
return dataBlock;
|
||||
}
|
||||
}
|
||||
return null;
|
||||
}
|
||||
|
||||
public ArrayList<PamDataBlock> getDataBlocks(Class blockType, boolean includeSubClasses) {
|
||||
return makeDataBlockList(blockType, includeSubClasses);
|
||||
}
|
||||
|
||||
public ArrayList<PamDataBlock> getDetectorDataBlocks() {
|
||||
return makeDataBlockList(PamDetection.class, true);
|
||||
}
|
||||
|
||||
public ArrayList<PamDataBlock> getFFTDataBlocks() {
|
||||
return makeDataBlockList(FFTDataUnit.class, true);
|
||||
}
|
||||
|
||||
public PamDataBlock getFFTDataBlock(int id) {
|
||||
return getDataBlock(FFTDataUnit.class, id);
|
||||
}
|
||||
|
||||
public PamDataBlock getFFTDataBlock(String name) {
|
||||
return getDataBlock(FFTDataUnit.class, name);
|
||||
}
|
||||
|
||||
/**
|
||||
* Find a block of a given type with the id number, or null if the number
|
||||
* is out of range.
|
||||
*
|
||||
* @param blockType
|
||||
* @param id -- the block id number
|
||||
* @return block, which you may want to cast to a subtype
|
||||
*/
|
||||
public PamDataBlock getDataBlock(Class blockType, int id) {
|
||||
|
||||
ArrayList<PamDataBlock> blocks = getDataBlocks(blockType, true);
|
||||
if (id >= 0 && id < blocks.size()) return blocks.get(id);
|
||||
return null;
|
||||
}
|
||||
public ArrayList<PamDataBlock> getRawDataBlocks() {
|
||||
return makeDataBlockList(RawDataUnit.class, true);
|
||||
}
|
||||
/**
|
||||
* Find a block with the given long name, or null if it doesn't exist.
|
||||
* @param longName the long name of the PamDataBlock
|
||||
* @return block
|
||||
*/
|
||||
public PamDataBlock getDataBlockByLongName(String longName) {
|
||||
if (longName == null) return null;
|
||||
ArrayList<PamDataBlock> allBlocks = getDataBlocks();
|
||||
for (PamDataBlock dataBlock:allBlocks) {
|
||||
if (longName.equals(dataBlock.getLongDataName())) {
|
||||
return dataBlock;
|
||||
}
|
||||
if (dataBlock instanceof FFTDataBlock) {
|
||||
FFTDataBlock fb = (FFTDataBlock) dataBlock;
|
||||
if (longName.equals(fb.getOldLongDataName())) {
|
||||
return dataBlock;
|
||||
}
|
||||
}
|
||||
}
|
||||
return null;
|
||||
}
|
||||
|
||||
public ArrayList<PamDataBlock> getDataBlocks() {
|
||||
return makeDataBlockList(PamDataUnit.class, true);
|
||||
}
|
||||
|
||||
/**
|
||||
* Get a list of PamControlledUnit units of a given type
|
||||
* @param unitType Controlled unit type
|
||||
* @return list of units.
|
||||
*/
|
||||
public ArrayList<PamControlledUnit> findControlledUnits(String unitType) {
|
||||
ArrayList<PamControlledUnit> l = new ArrayList<PamControlledUnit>();
|
||||
int n = getNumControlledUnits();
|
||||
PamControlledUnit pcu;
|
||||
for (int i = 0; i < n; i++) {
|
||||
pcu = getControlledUnit(i);
|
||||
if (pcu.getUnitType().equals(unitType)) {
|
||||
l.add(pcu);
|
||||
}
|
||||
}
|
||||
|
||||
return l;
|
||||
}
|
||||
|
||||
/**
|
||||
* Get a list of PamControlledUnit units of a given type and name, allowing for nulls.
|
||||
* @param unitType Controlled unit type, can be null for all units of name
|
||||
* @param unitName Controlled unit name, can be null for all units of type
|
||||
* @return list of units.
|
||||
*/
|
||||
public ArrayList<PamControlledUnit> findControlledUnits(String unitType, String unitName) {
|
||||
ArrayList<PamControlledUnit> l = new ArrayList<PamControlledUnit>();
|
||||
int n = getNumControlledUnits();
|
||||
PamControlledUnit pcu;
|
||||
for (int i = 0; i < n; i++) {
|
||||
pcu = getControlledUnit(i);
|
||||
if (unitType != null && !unitType.equals(pcu.getUnitType())) {
|
||||
continue;
|
||||
}
|
||||
if (unitName != null && !unitName.equals(pcu.getUnitName())) {
|
||||
continue;
|
||||
}
|
||||
l.add(pcu);
|
||||
}
|
||||
|
||||
return l;
|
||||
}
|
||||
|
||||
/**
|
||||
* find the first controlled unit with the given type and name.
|
||||
* @param unitType
|
||||
* @param unitName
|
||||
* @return
|
||||
*/
|
||||
public PamControlledUnit findControlledUnit(String unitType, String unitName) {
|
||||
for (int i = 0; i < getNumControlledUnits(); i++) {
|
||||
if (pamControlledUnits.get(i).getUnitType().equalsIgnoreCase(unitType) &&
|
||||
pamControlledUnits.get(i).getUnitName().equalsIgnoreCase(unitName)) {
|
||||
return pamControlledUnits.get(i);
|
||||
}
|
||||
}
|
||||
return null;
|
||||
}
|
||||
|
||||
/**
|
||||
* Find the first instance of a module with a given class type and name.
|
||||
* <p>Name can be null in which case the first module with the correct class
|
||||
* will be returned
|
||||
* @param unitClass Module class (sub class of PamControlledUnit)
|
||||
* @param unitName Module Name
|
||||
* @return Existing module with that class and name.
|
||||
*/
|
||||
public PamControlledUnit findControlledUnit(Class unitClass, String unitName) {
|
||||
for (int i = 0; i < getNumControlledUnits(); i++) {
|
||||
if (pamControlledUnits.get(i).getClass() == unitClass && (unitName == null ||
|
||||
pamControlledUnits.get(i).getUnitName().equalsIgnoreCase(unitName))) {
|
||||
return pamControlledUnits.get(i);
|
||||
}
|
||||
}
|
||||
return null;
|
||||
}
|
||||
|
||||
/**
|
||||
* Get an Array list of PamControlledUnits of a particular class (exact matches only).
|
||||
* @param unitClass PamControlledUnit class
|
||||
* @return List of current instances of this class.
|
||||
*/
|
||||
public ArrayList<PamControlledUnit> findControlledUnits(Class unitClass) {
|
||||
ArrayList<PamControlledUnit> foundUnits = new ArrayList<>();
|
||||
for (int i = 0; i < getNumControlledUnits(); i++) {
|
||||
if (pamControlledUnits.get(i).getClass() == unitClass) {
|
||||
foundUnits.add(pamControlledUnits.get(i));
|
||||
}
|
||||
}
|
||||
return foundUnits;
|
||||
}
|
||||
|
||||
/**
|
||||
* Get an Array list of PamControlledUnits of a particular class (exact matches only).
|
||||
* @param unitClass PamControlledUnit class
|
||||
* @return List of current instances of this class.
|
||||
*/
|
||||
public ArrayList<PamControlledUnit> findControlledUnits(Class unitClass, boolean includeSubClasses) {
|
||||
if (includeSubClasses == false) {
|
||||
return findControlledUnits(unitClass);
|
||||
}
|
||||
ArrayList<PamControlledUnit> foundUnits = new ArrayList<>();
|
||||
for (int i = 0; i < getNumControlledUnits(); i++) {
|
||||
if (unitClass.isAssignableFrom(pamControlledUnits.get(i).getClass())) {
|
||||
foundUnits.add(pamControlledUnits.get(i));
|
||||
}
|
||||
}
|
||||
return foundUnits;
|
||||
}
|
||||
/**
|
||||
* Check whether a controlled unit exists based on it's name.
|
||||
* @param the controlled unit name e.g. "my crazy click detector", not the default name.
|
||||
*/
|
||||
public boolean isControlledUnit(String controlName) {
|
||||
for (int i = 0; i < getNumControlledUnits(); i++) {
|
||||
if (pamControlledUnits.get(i).getUnitName().equalsIgnoreCase(controlName)) {
|
||||
return true;
|
||||
}
|
||||
}
|
||||
return false;
|
||||
}
|
||||
|
||||
/**
|
||||
* Gets called in pamStart and may / will attempt to store all
|
||||
* PAMGUARD settings via the database and binary storage modules.
|
||||
*/
|
||||
public void saveSettings(long timeNow) {
|
||||
PamControlledUnit pcu;
|
||||
PamSettingsSource settingsSource;
|
||||
for (int iU = 0; iU < pamControlledUnits.size(); iU++) {
|
||||
pcu = pamControlledUnits.get(iU);
|
||||
if (PamSettingsSource.class.isAssignableFrom(pcu.getClass())) {
|
||||
settingsSource = (PamSettingsSource) pcu;
|
||||
settingsSource.saveStartSettings(timeNow);
|
||||
}
|
||||
}
|
||||
PamguardXMLWriter.getXMLWriter().writeStartSettings(timeNow);
|
||||
}
|
||||
|
||||
/**
|
||||
*
|
||||
* @return a list of PamControlledUnits which implements the
|
||||
* PamSettingsSource interface
|
||||
* @see PamSettingsSource
|
||||
*/
|
||||
public ArrayList<PamSettingsSource> findSettingsSources() {
|
||||
ArrayList<PamSettingsSource> settingsSources = new ArrayList<PamSettingsSource>();
|
||||
PamControlledUnit pcu;
|
||||
for (int iU = 0; iU < pamControlledUnits.size(); iU++) {
|
||||
pcu = pamControlledUnits.get(iU);
|
||||
if (PamSettingsSource.class.isAssignableFrom(pcu.getClass())) {
|
||||
settingsSources.add((PamSettingsSource) pcu);
|
||||
}
|
||||
}
|
||||
return settingsSources;
|
||||
}
|
||||
|
||||
public ArrayList<PamDataBlock> getPlottableDataBlocks(GeneralProjector generalProjector) {
|
||||
|
||||
ArrayList<PamDataBlock> blockList = new ArrayList<PamDataBlock>();
|
||||
PamProcess pP;
|
||||
Class unitClass;
|
||||
PanelOverlayDraw panelOverlayDraw;
|
||||
|
||||
for (int iU = 0; iU < pamControlledUnits.size(); iU++) {
|
||||
for (int iP = 0; iP < pamControlledUnits.get(iU)
|
||||
.getNumPamProcesses(); iP++) {
|
||||
pP = pamControlledUnits.get(iU).getPamProcess(iP);
|
||||
for (int j = 0; j < pP.getNumOutputDataBlocks(); j++) {
|
||||
if(pP.getOutputDataBlock(j).canDraw(generalProjector)) {
|
||||
blockList.add(pP.getOutputDataBlock(j));
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
return blockList;
|
||||
}
|
||||
|
||||
public ArrayList<PamDataBlock> makeDataBlockList(Class classType, boolean includSubClasses) {
|
||||
|
||||
ArrayList<PamDataBlock> blockList = new ArrayList<PamDataBlock>();
|
||||
PamProcess pP;
|
||||
Class unitClass;
|
||||
|
||||
for (int iU = 0; iU < pamControlledUnits.size(); iU++) {
|
||||
for (int iP = 0; iP < pamControlledUnits.get(iU)
|
||||
.getNumPamProcesses(); iP++) {
|
||||
pP = pamControlledUnits.get(iU).getPamProcess(iP);
|
||||
for (int j = 0; j < pP.getNumOutputDataBlocks(); j++) {
|
||||
//System.out.println("Comparing "+pP.getOutputDataBlock(j).getUnitClass().getCanonicalName()+" to "+classType.getCanonicalName());
|
||||
if ((unitClass = pP.getOutputDataBlock(j).getUnitClass()) == classType) {
|
||||
blockList.add(pP.getOutputDataBlock(j));
|
||||
}
|
||||
else if (includSubClasses) {
|
||||
if (classType != null && classType.isAssignableFrom(unitClass)) {
|
||||
blockList.add(pP.getOutputDataBlock(j));
|
||||
}
|
||||
// while ((unitClass = unitClass.getSuperclass()) != null) {
|
||||
// if (unitClass == classType) {
|
||||
// blockList.add(pP.getOutputDataBlock(j));
|
||||
// break;
|
||||
// }
|
||||
// }
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
return blockList;
|
||||
}
|
||||
|
||||
public void notifyModelChanged(int changeType) {
|
||||
// also tell all PamControlledUnits since they may want to find their data source
|
||||
// it that was created after they were - i.e. dependencies have got all muddled
|
||||
for (int i = 0; i < pamControlledUnits.size(); i++) {
|
||||
pamControlledUnits.get(i).notifyModelChanged(changeType);
|
||||
}
|
||||
}
|
||||
|
||||
public Serializable getSettingsReference() {
|
||||
ArrayList<UsedModuleInfo> usedModules = new ArrayList<UsedModuleInfo>();
|
||||
for (int i = 0; i < pamControlledUnits.size(); i++) {
|
||||
usedModules.add(new UsedModuleInfo(pamControlledUnits.get(i).getClass().getName(),
|
||||
pamControlledUnits.get(i).getUnitType(),
|
||||
pamControlledUnits.get(i).getUnitName()));
|
||||
}
|
||||
return usedModules;
|
||||
}
|
||||
|
||||
public void destroyModel() {
|
||||
|
||||
for (int i = 0; i < pamControlledUnits.size(); i++) {
|
||||
pamControlledUnits.get(i).notifyModelChanged(PamController.DESTROY_EVERYTHING);
|
||||
}
|
||||
pamControlledUnits.clear();
|
||||
}
|
||||
|
||||
/**
|
||||
* Get the index of a PamControlledUnit
|
||||
* @param unit
|
||||
* @return
|
||||
*/
|
||||
public int getControlledUnitIndex(PamControlledUnit unit) {
|
||||
return pamControlledUnits.indexOf(unit);
|
||||
}
|
||||
|
||||
/**
|
||||
* Find the path to the binary store ....
|
||||
* @return path to the binary store.
|
||||
*/
|
||||
public String findBinaryStorePath() {
|
||||
BinaryStore binaryStore = (BinaryStore) findControlledUnit(BinaryStore.getBinaryUnitType());
|
||||
if (binaryStore == null) {
|
||||
return null;
|
||||
}
|
||||
String storeLoc = binaryStore.getBinaryStoreSettings().getStoreLocation();
|
||||
if (storeLoc == null) {
|
||||
return "";
|
||||
}
|
||||
if (storeLoc.endsWith(File.separator) == false) {
|
||||
storeLoc += File.separator;
|
||||
}
|
||||
return storeLoc;
|
||||
}
|
||||
|
||||
/**
|
||||
* Get a list of all offline task groups in this configuration
|
||||
* @return task group list
|
||||
*/
|
||||
public ArrayList<OfflineTaskGroup> getAllOfflineTaskGroups() {
|
||||
ArrayList<OfflineTaskGroup> tgs = new ArrayList<OfflineTaskGroup>();
|
||||
for (PamControlledUnit unit : pamControlledUnits){
|
||||
int numGroups = unit.getNumOfflineTaskGroups();
|
||||
for (int iGp=0;iGp<numGroups;iGp++){
|
||||
tgs.add( unit.getOfflineTaskGroup(iGp));
|
||||
|
||||
}
|
||||
}
|
||||
return tgs;
|
||||
}
|
||||
|
||||
/**
|
||||
* Get a list of all offline tasks in the configuration
|
||||
* @return offline task list
|
||||
*/
|
||||
public ArrayList<OfflineTask> getAllOfflineTasks() {
|
||||
ArrayList<OfflineTask> ots = new ArrayList<OfflineTask>();
|
||||
ArrayList<OfflineTaskGroup> groups = getAllOfflineTaskGroups();
|
||||
for (OfflineTaskGroup group : groups) {
|
||||
int nTasks = group.getNTasks();
|
||||
for (int i = 0; i < nTasks; i++) {
|
||||
ots.add(group.getTask(i));
|
||||
}
|
||||
}
|
||||
return ots;
|
||||
}
|
||||
}
|
||||
@ -144,6 +144,8 @@ public abstract class PamControlledUnit implements SettingsNameProvider {
|
||||
|
||||
private ModuleStatusManager moduleStatusManager;
|
||||
|
||||
private PamConfiguration pamConfiguration;
|
||||
|
||||
// private ArrayList<OfflineTask> offlineTasks = new ArrayList<>();
|
||||
|
||||
/**
|
||||
@ -158,8 +160,17 @@ public abstract class PamControlledUnit implements SettingsNameProvider {
|
||||
* name of unit
|
||||
*/
|
||||
public PamControlledUnit(String unitType, String unitName) {
|
||||
this(null, unitType, unitName);
|
||||
}
|
||||
|
||||
public PamControlledUnit(PamConfiguration pamConfiguration, String unitType, String unitName) {
|
||||
this.unitType = unitType;
|
||||
this.unitName = unitName;
|
||||
this.pamConfiguration = pamConfiguration;
|
||||
if (this.pamConfiguration == null) {
|
||||
this.pamConfiguration = PamController.getInstance().getPamConfiguration();
|
||||
}
|
||||
|
||||
pamProcesses = new ArrayList<PamProcess>();
|
||||
|
||||
isViewer = PamController.getInstance().getRunMode() == PamController.RUN_PAMVIEW;
|
||||
@ -500,6 +511,12 @@ public abstract class PamControlledUnit implements SettingsNameProvider {
|
||||
return true;
|
||||
}
|
||||
|
||||
/**
|
||||
* Get the GUI associated with this module. However, this may return null, so if you want a frame
|
||||
* to use for a dialog, better to use PamController.getGuiFrame() which handles null automatically.
|
||||
* @return
|
||||
*/
|
||||
@Deprecated
|
||||
public PamView getPamView() {
|
||||
return pamView;
|
||||
}
|
||||
@ -677,11 +694,11 @@ public abstract class PamControlledUnit implements SettingsNameProvider {
|
||||
* @param offlineTaskGroup
|
||||
*/
|
||||
public void addOfflineTaskGroup(OfflineTaskGroup offlineTaskGroup) {
|
||||
if (isViewer){
|
||||
// if (isViewer){
|
||||
offlineTaskGroups.add(offlineTaskGroup);
|
||||
}else{
|
||||
System.out.println("OfflineTaskGroup cannot be added as is not viewer mode");
|
||||
}
|
||||
// }else{
|
||||
// System.out.println("OfflineTaskGroup cannot be added as is not viewer mode");
|
||||
// }
|
||||
|
||||
}
|
||||
|
||||
@ -884,4 +901,34 @@ public abstract class PamControlledUnit implements SettingsNameProvider {
|
||||
return null;
|
||||
}
|
||||
|
||||
/**
|
||||
* The PamConfiguration holds the master list of modules which form part of a
|
||||
* configuration. It should be accessed to find list of datablocks, etc. rather than
|
||||
* doing everything through PAMController whenever possible.
|
||||
* @return the pamConfiguration
|
||||
*/
|
||||
public PamConfiguration getPamConfiguration() {
|
||||
if (pamConfiguration == null) {
|
||||
pamConfiguration = PamController.getInstance().getPamConfiguration();
|
||||
}
|
||||
return pamConfiguration;
|
||||
}
|
||||
|
||||
/**
|
||||
* Is this module in the main configuration. If it isn't then it's probably a dummy config
|
||||
* used in the batch processor or for importing / exporting configs, so it should be stopped from
|
||||
* doing too much !
|
||||
* @return
|
||||
*/
|
||||
public boolean isInMainConfiguration() {
|
||||
return pamConfiguration == PamController.getInstance().getPamConfiguration();
|
||||
}
|
||||
|
||||
/**
|
||||
* @param pamConfiguration the pamConfiguration to set
|
||||
*/
|
||||
public void setPamConfiguration(PamConfiguration pamConfiguration) {
|
||||
this.pamConfiguration = pamConfiguration;
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
@ -34,6 +34,9 @@ import javax.swing.SwingUtilities;
|
||||
import javax.swing.Timer;
|
||||
import javax.swing.ToolTipManager;
|
||||
|
||||
import com.jcraft.jsch.ConfigRepository.Config;
|
||||
import com.sun.xml.bind.v2.TODO;
|
||||
|
||||
import Acquisition.AcquisitionProcess;
|
||||
|
||||
//import com.sun.org.apache.xerces.internal.dom.DocumentImpl;
|
||||
@ -68,7 +71,6 @@ import PamController.soundMedium.GlobalMediumManager;
|
||||
import PamDetection.PamDetection;
|
||||
import PamDetection.RawDataUnit;
|
||||
import PamModel.PamModel;
|
||||
import PamModel.PamModelInterface;
|
||||
import PamModel.PamModelSettings;
|
||||
import PamModel.PamModuleInfo;
|
||||
import PamModel.SMRUEnable;
|
||||
@ -145,11 +147,7 @@ public class PamController implements PamControllerInterface, PamSettings {
|
||||
*/
|
||||
private PamModel pamModelInterface;
|
||||
|
||||
/**
|
||||
* List of the current controlled units (PAMGuard modules)
|
||||
*/
|
||||
private ArrayList<PamControlledUnit> pamControlledUnits;
|
||||
|
||||
private PamConfiguration pamConfiguration;
|
||||
/**
|
||||
* The current PAM status
|
||||
*/
|
||||
@ -236,6 +234,8 @@ public class PamController implements PamControllerInterface, PamSettings {
|
||||
private PamController(int runMode, Object object) {
|
||||
|
||||
uniqueController = this;
|
||||
|
||||
pamConfiguration = new PamConfiguration();
|
||||
|
||||
this.runMode = runMode;
|
||||
|
||||
@ -354,10 +354,6 @@ public class PamController implements PamControllerInterface, PamSettings {
|
||||
*/
|
||||
public void setupPamguard() {
|
||||
|
||||
|
||||
// create the array list to hold multiple views
|
||||
pamControlledUnits = new ArrayList<PamControlledUnit>();
|
||||
|
||||
/**
|
||||
* Set Locale to English so that formated writes to text fields
|
||||
* in dialogs use . and not , for the decimal.
|
||||
@ -663,9 +659,10 @@ public class PamController implements PamControllerInterface, PamSettings {
|
||||
// }
|
||||
|
||||
void setupProcesses() {
|
||||
for (int i = 0; i < pamControlledUnits.size(); i++) {
|
||||
pamControlledUnits.get(i).setupControlledUnit();
|
||||
}
|
||||
// for (int i = 0; i < pamControlledUnits.size(); i++) {
|
||||
// pamControlledUnits.get(i).setupControlledUnit();
|
||||
// }
|
||||
pamConfiguration.setupProcesses();
|
||||
}
|
||||
|
||||
/**
|
||||
@ -677,12 +674,7 @@ public class PamController implements PamControllerInterface, PamSettings {
|
||||
* without corrupting or losing data.
|
||||
*/
|
||||
public boolean canClose() {
|
||||
for (int i = 0; i < pamControlledUnits.size(); i++) {
|
||||
if (pamControlledUnits.get(i).canClose() == false) {
|
||||
return false;
|
||||
}
|
||||
}
|
||||
return true;
|
||||
return pamConfiguration.canClose();
|
||||
}
|
||||
|
||||
|
||||
@ -696,9 +688,7 @@ public class PamController implements PamControllerInterface, PamSettings {
|
||||
|
||||
getUidManager().runShutDownOps();
|
||||
|
||||
for (int i = 0; i < pamControlledUnits.size(); i++) {
|
||||
pamControlledUnits.get(i).pamClose();
|
||||
}
|
||||
pamConfiguration.pamClose();
|
||||
}
|
||||
|
||||
/**
|
||||
@ -718,6 +708,7 @@ public class PamController implements PamControllerInterface, PamSettings {
|
||||
* it to be easy to override this for specific modules / processes / data blocks.
|
||||
*/
|
||||
public void saveViewerData() {
|
||||
ArrayList<PamControlledUnit> pamControlledUnits = pamConfiguration.getPamControlledUnits();
|
||||
for (int i = 0; i < pamControlledUnits.size(); i++) {
|
||||
pamControlledUnits.get(i).saveViewerData();
|
||||
}
|
||||
@ -730,7 +721,8 @@ public class PamController implements PamControllerInterface, PamSettings {
|
||||
|
||||
@Override
|
||||
public void addControlledUnit(PamControlledUnit controlledUnit) {
|
||||
pamControlledUnits.add(controlledUnit);
|
||||
|
||||
pamConfiguration.addControlledUnit(controlledUnit);
|
||||
|
||||
guiFrameManager.addControlledUnit(controlledUnit);
|
||||
|
||||
@ -856,8 +848,8 @@ public class PamController implements PamControllerInterface, PamSettings {
|
||||
|
||||
guiFrameManager.removeControlledUnit(controlledUnit);
|
||||
|
||||
while (pamControlledUnits.contains(controlledUnit)) {
|
||||
pamControlledUnits.remove(controlledUnit);
|
||||
boolean removed = pamConfiguration.removeControlledUnt(controlledUnit);
|
||||
if (removed) {
|
||||
notifyModelChanged(PamControllerInterface.REMOVE_CONTROLLEDUNIT);
|
||||
}
|
||||
// getMainFrame().revalidate(); //handled inside the GUIFrameManager by notify model changed. The controller should have
|
||||
@ -873,7 +865,7 @@ public class PamController implements PamControllerInterface, PamSettings {
|
||||
int[] newOrder = ModuleOrderDialog.showDialog(this, parentFrame);
|
||||
if (newOrder != null) {
|
||||
// re-order the modules according the new list.
|
||||
reOrderModules(newOrder);
|
||||
pamConfiguration.reOrderModules(newOrder);
|
||||
|
||||
notifyModelChanged(PamControllerInterface.REORDER_CONTROLLEDUNITS);
|
||||
|
||||
@ -883,22 +875,22 @@ public class PamController implements PamControllerInterface, PamSettings {
|
||||
return false;
|
||||
}
|
||||
|
||||
private boolean reOrderModules(int[] newOrder) {
|
||||
|
||||
if (pamControlledUnits.size() != newOrder.length) return false;
|
||||
|
||||
ArrayList<PamControlledUnit> newList = new ArrayList<PamControlledUnit>();
|
||||
|
||||
for (int i = 0; i < newOrder.length; i++) {
|
||||
|
||||
newList.add(pamControlledUnits.get(newOrder[i]));
|
||||
|
||||
}
|
||||
|
||||
pamControlledUnits = newList;
|
||||
|
||||
return true;
|
||||
}
|
||||
// private boolean reOrderModules(int[] newOrder) {
|
||||
//
|
||||
// if (pamControlledUnits.size() != newOrder.length) return false;
|
||||
//
|
||||
// ArrayList<PamControlledUnit> newList = new ArrayList<PamControlledUnit>();
|
||||
//
|
||||
// for (int i = 0; i < newOrder.length; i++) {
|
||||
//
|
||||
// newList.add(pamControlledUnits.get(newOrder[i]));
|
||||
//
|
||||
// }
|
||||
//
|
||||
// pamControlledUnits = newList;
|
||||
//
|
||||
// return true;
|
||||
// }
|
||||
|
||||
/**
|
||||
* Swaps the positions of two modules in the main list of modules and
|
||||
@ -924,20 +916,12 @@ public class PamController implements PamControllerInterface, PamSettings {
|
||||
|
||||
@Override
|
||||
public PamControlledUnit getControlledUnit(int iUnit) {
|
||||
if (iUnit < getNumControlledUnits()) {
|
||||
return pamControlledUnits.get(iUnit);
|
||||
}
|
||||
return null;
|
||||
return pamConfiguration.getControlledUnit(iUnit);
|
||||
}
|
||||
|
||||
@Override
|
||||
public PamControlledUnit findControlledUnit(String unitType) {
|
||||
for (int i = 0; i < getNumControlledUnits(); i++) {
|
||||
if (pamControlledUnits.get(i).getUnitType().equalsIgnoreCase(unitType)) {
|
||||
return pamControlledUnits.get(i);
|
||||
}
|
||||
}
|
||||
return null;
|
||||
return pamConfiguration.findControlledUnit(unitType);
|
||||
}
|
||||
|
||||
/**
|
||||
@ -946,17 +930,7 @@ public class PamController implements PamControllerInterface, PamSettings {
|
||||
* @return list of units.
|
||||
*/
|
||||
public ArrayList<PamControlledUnit> findControlledUnits(String unitType) {
|
||||
ArrayList<PamControlledUnit> l = new ArrayList<PamControlledUnit>();
|
||||
int n = getNumControlledUnits();
|
||||
PamControlledUnit pcu;
|
||||
for (int i = 0; i < n; i++) {
|
||||
pcu = getControlledUnit(i);
|
||||
if (pcu.getUnitType().equals(unitType)) {
|
||||
l.add(pcu);
|
||||
}
|
||||
}
|
||||
|
||||
return l;
|
||||
return pamConfiguration.findControlledUnits(unitType);
|
||||
}
|
||||
/**
|
||||
* Get a list of PamControlledUnit units of a given type and name, allowing for nulls.
|
||||
@ -965,32 +939,12 @@ public class PamController implements PamControllerInterface, PamSettings {
|
||||
* @return list of units.
|
||||
*/
|
||||
public ArrayList<PamControlledUnit> findControlledUnits(String unitType, String unitName) {
|
||||
ArrayList<PamControlledUnit> l = new ArrayList<PamControlledUnit>();
|
||||
int n = getNumControlledUnits();
|
||||
PamControlledUnit pcu;
|
||||
for (int i = 0; i < n; i++) {
|
||||
pcu = getControlledUnit(i);
|
||||
if (unitType != null && !unitType.equals(pcu.getUnitType())) {
|
||||
continue;
|
||||
}
|
||||
if (unitName != null && !unitName.equals(pcu.getUnitName())) {
|
||||
continue;
|
||||
}
|
||||
l.add(pcu);
|
||||
}
|
||||
|
||||
return l;
|
||||
return pamConfiguration.findControlledUnits(unitType, unitName);
|
||||
}
|
||||
|
||||
@Override
|
||||
public PamControlledUnit findControlledUnit(String unitType, String unitName) {
|
||||
for (int i = 0; i < getNumControlledUnits(); i++) {
|
||||
if (pamControlledUnits.get(i).getUnitType().equalsIgnoreCase(unitType) &&
|
||||
pamControlledUnits.get(i).getUnitName().equalsIgnoreCase(unitName)) {
|
||||
return pamControlledUnits.get(i);
|
||||
}
|
||||
}
|
||||
return null;
|
||||
return pamConfiguration.findControlledUnit(unitType, unitName);
|
||||
}
|
||||
|
||||
/**
|
||||
@ -1002,13 +956,7 @@ public class PamController implements PamControllerInterface, PamSettings {
|
||||
* @return Existing module with that class and name.
|
||||
*/
|
||||
public PamControlledUnit findControlledUnit(Class unitClass, String unitName) {
|
||||
for (int i = 0; i < getNumControlledUnits(); i++) {
|
||||
if (pamControlledUnits.get(i).getClass() == unitClass && (unitName == null ||
|
||||
pamControlledUnits.get(i).getUnitName().equalsIgnoreCase(unitName))) {
|
||||
return pamControlledUnits.get(i);
|
||||
}
|
||||
}
|
||||
return null;
|
||||
return pamConfiguration.findControlledUnit(unitClass, unitName);
|
||||
}
|
||||
|
||||
/**
|
||||
@ -1017,13 +965,7 @@ public class PamController implements PamControllerInterface, PamSettings {
|
||||
* @return List of current instances of this class.
|
||||
*/
|
||||
public ArrayList<PamControlledUnit> findControlledUnits(Class unitClass) {
|
||||
ArrayList<PamControlledUnit> foundUnits = new ArrayList<>();
|
||||
for (int i = 0; i < getNumControlledUnits(); i++) {
|
||||
if (pamControlledUnits.get(i).getClass() == unitClass) {
|
||||
foundUnits.add(pamControlledUnits.get(i));
|
||||
}
|
||||
}
|
||||
return foundUnits;
|
||||
return pamConfiguration.findControlledUnits(unitClass);
|
||||
}
|
||||
|
||||
/**
|
||||
@ -1032,16 +974,7 @@ public class PamController implements PamControllerInterface, PamSettings {
|
||||
* @return List of current instances of this class.
|
||||
*/
|
||||
public ArrayList<PamControlledUnit> findControlledUnits(Class unitClass, boolean includeSubClasses) {
|
||||
if (includeSubClasses == false) {
|
||||
return findControlledUnits(unitClass);
|
||||
}
|
||||
ArrayList<PamControlledUnit> foundUnits = new ArrayList<>();
|
||||
for (int i = 0; i < getNumControlledUnits(); i++) {
|
||||
if (unitClass.isAssignableFrom(pamControlledUnits.get(i).getClass())) {
|
||||
foundUnits.add(pamControlledUnits.get(i));
|
||||
}
|
||||
}
|
||||
return foundUnits;
|
||||
return pamConfiguration.findControlledUnits(unitClass, includeSubClasses);
|
||||
}
|
||||
|
||||
/**
|
||||
@ -1049,28 +982,19 @@ public class PamController implements PamControllerInterface, PamSettings {
|
||||
* @param the controlled unit name e.g. "my crazy click detector", not the default name.
|
||||
*/
|
||||
public boolean isControlledUnit(String controlName) {
|
||||
for (int i = 0; i < getNumControlledUnits(); i++) {
|
||||
if (pamControlledUnits.get(i).getUnitName().equalsIgnoreCase(controlName)) {
|
||||
return true;
|
||||
}
|
||||
}
|
||||
return false;
|
||||
return pamConfiguration.isControlledUnit(controlName);
|
||||
}
|
||||
|
||||
@Override
|
||||
public int getNumControlledUnits() {
|
||||
if (pamControlledUnits == null) {
|
||||
return 0;
|
||||
}
|
||||
return pamControlledUnits.size();
|
||||
return pamConfiguration.getNumControlledUnits();
|
||||
}
|
||||
|
||||
static public PamController getInstance() {
|
||||
return uniqueController;
|
||||
}
|
||||
|
||||
@Override
|
||||
public PamModelInterface getModelInterface() {
|
||||
public PamModel getModelInterface() {
|
||||
return pamModelInterface;
|
||||
}
|
||||
|
||||
@ -1187,6 +1111,8 @@ public class PamController implements PamControllerInterface, PamSettings {
|
||||
globalTimeManager.getGlobalTimeParameters().getStartupDelay());
|
||||
|
||||
manualStop = false;
|
||||
|
||||
ArrayList<PamControlledUnit> pamControlledUnits = pamConfiguration.getPamControlledUnits();
|
||||
|
||||
PamCalendar.setSessionStartTime(startTime);
|
||||
setPamStatus(PAM_RUNNING);
|
||||
@ -1287,6 +1213,7 @@ public class PamController implements PamControllerInterface, PamSettings {
|
||||
// actually stopped
|
||||
// statusCheckThread = new Thread(new StatusTimer());
|
||||
// statusCheckThread.start();
|
||||
ArrayList<PamControlledUnit> pamControlledUnits = pamConfiguration.getPamControlledUnits();
|
||||
|
||||
// tell all controlled units to stop
|
||||
for (int iU = 0; iU < pamControlledUnits.size(); iU++) {
|
||||
@ -1362,6 +1289,8 @@ public class PamController implements PamControllerInterface, PamSettings {
|
||||
* it is necessary to make sure that all internal datablock
|
||||
* buffers have had time to empty.
|
||||
*/
|
||||
ArrayList<PamControlledUnit> pamControlledUnits = pamConfiguration.getPamControlledUnits();
|
||||
|
||||
if (PamModel.getPamModel().isMultiThread()) {
|
||||
for (int iU = 0; iU < pamControlledUnits.size(); iU++) {
|
||||
pamControlledUnits.get(iU).flushDataBlockBuffers(2000);
|
||||
@ -1482,6 +1411,8 @@ public class PamController implements PamControllerInterface, PamSettings {
|
||||
// }
|
||||
// Debug.out.println(" Are we finished? " + areWeFinished);
|
||||
// return areWeFinished;
|
||||
ArrayList<PamControlledUnit> pamControlledUnits = pamConfiguration.getPamControlledUnits();
|
||||
|
||||
boolean running = false;
|
||||
for (PamControlledUnit aUnit : pamControlledUnits) {
|
||||
int numProcesses = aUnit.getNumPamProcesses();
|
||||
@ -1504,16 +1435,7 @@ public class PamController implements PamControllerInterface, PamSettings {
|
||||
* PAMGUARD settings via the database and binary storage modules.
|
||||
*/
|
||||
private void saveSettings(long timeNow) {
|
||||
PamControlledUnit pcu;
|
||||
PamSettingsSource settingsSource;
|
||||
for (int iU = 0; iU < pamControlledUnits.size(); iU++) {
|
||||
pcu = pamControlledUnits.get(iU);
|
||||
if (PamSettingsSource.class.isAssignableFrom(pcu.getClass())) {
|
||||
settingsSource = (PamSettingsSource) pcu;
|
||||
settingsSource.saveStartSettings(timeNow);
|
||||
}
|
||||
}
|
||||
PamguardXMLWriter.getXMLWriter().writeStartSettings(timeNow);
|
||||
pamConfiguration.saveSettings(timeNow);
|
||||
}
|
||||
|
||||
/**
|
||||
@ -1549,18 +1471,20 @@ public class PamController implements PamControllerInterface, PamSettings {
|
||||
* @return path to the binary store.
|
||||
*/
|
||||
public String findBinaryStorePath() {
|
||||
BinaryStore binaryControl = BinaryStore.findBinaryStoreControl();
|
||||
if (binaryControl == null) {
|
||||
return null;
|
||||
}
|
||||
String storeLoc = binaryControl.getBinaryStoreSettings().getStoreLocation();
|
||||
if (storeLoc == null) {
|
||||
return "";
|
||||
}
|
||||
if (storeLoc.endsWith(File.separator) == false) {
|
||||
storeLoc += File.separator;
|
||||
}
|
||||
return storeLoc;
|
||||
// TODO get rid of the singleton binary store control and do from the Config.class
|
||||
// BinaryStore binaryControl = BinaryStore.findBinaryStoreControl();
|
||||
// if (binaryControl == null) {
|
||||
// return null;
|
||||
// }
|
||||
// String storeLoc = binaryControl.getBinaryStoreSettings().getStoreLocation();
|
||||
// if (storeLoc == null) {
|
||||
// return "";
|
||||
// }
|
||||
// if (storeLoc.endsWith(File.separator) == false) {
|
||||
// storeLoc += File.separator;
|
||||
// }
|
||||
// return storeLoc;
|
||||
return pamConfiguration.findBinaryStorePath();
|
||||
}
|
||||
|
||||
/**
|
||||
@ -1570,15 +1494,7 @@ public class PamController implements PamControllerInterface, PamSettings {
|
||||
* @see PamSettingsSource
|
||||
*/
|
||||
public ArrayList<PamSettingsSource> findSettingsSources() {
|
||||
ArrayList<PamSettingsSource> settingsSources = new ArrayList<PamSettingsSource>();
|
||||
PamControlledUnit pcu;
|
||||
for (int iU = 0; iU < pamControlledUnits.size(); iU++) {
|
||||
pcu = pamControlledUnits.get(iU);
|
||||
if (PamSettingsSource.class.isAssignableFrom(pcu.getClass())) {
|
||||
settingsSources.add((PamSettingsSource) pcu);
|
||||
}
|
||||
}
|
||||
return settingsSources;
|
||||
return pamConfiguration.findSettingsSources();
|
||||
}
|
||||
|
||||
@Override
|
||||
@ -1607,37 +1523,37 @@ public class PamController implements PamControllerInterface, PamSettings {
|
||||
*/
|
||||
@Override
|
||||
public ArrayList<PamDataBlock> getFFTDataBlocks() {
|
||||
return makeDataBlockList(FFTDataUnit.class, true);
|
||||
return pamConfiguration.getFFTDataBlocks();
|
||||
}
|
||||
|
||||
@Override
|
||||
public PamDataBlock getFFTDataBlock(int id) {
|
||||
return getDataBlock(FFTDataUnit.class, id);
|
||||
return pamConfiguration.getDataBlock(FFTDataUnit.class, id);
|
||||
}
|
||||
|
||||
@Override
|
||||
public PamDataBlock getFFTDataBlock(String name) {
|
||||
return getDataBlock(FFTDataUnit.class, name);
|
||||
return pamConfiguration.getDataBlock(FFTDataUnit.class, name);
|
||||
}
|
||||
|
||||
@Override
|
||||
public ArrayList<PamDataBlock> getRawDataBlocks() {
|
||||
return makeDataBlockList(RawDataUnit.class, true);
|
||||
return pamConfiguration.makeDataBlockList(RawDataUnit.class, true);
|
||||
}
|
||||
|
||||
@Override
|
||||
public PamRawDataBlock getRawDataBlock(int id) {
|
||||
return (PamRawDataBlock) getDataBlock(RawDataUnit.class, id);
|
||||
return (PamRawDataBlock) pamConfiguration.getDataBlock(RawDataUnit.class, id);
|
||||
}
|
||||
|
||||
@Override
|
||||
public PamRawDataBlock getRawDataBlock(String name) {
|
||||
return (PamRawDataBlock) getDataBlock(RawDataUnit.class, name);
|
||||
return pamConfiguration.getRawDataBlock(name);
|
||||
}
|
||||
|
||||
@Override
|
||||
public ArrayList<PamDataBlock> getDetectorDataBlocks() {
|
||||
return makeDataBlockList(PamDetection.class, true);
|
||||
return pamConfiguration.getDetectorDataBlocks();
|
||||
}
|
||||
|
||||
@Override
|
||||
@ -1675,33 +1591,16 @@ public class PamController implements PamControllerInterface, PamSettings {
|
||||
* true.
|
||||
*/
|
||||
public ArrayList<PamDataBlock> getDataBlocks(Class blockType, boolean includeSubClasses) {
|
||||
return makeDataBlockList(blockType, includeSubClasses);
|
||||
return pamConfiguration.getDataBlocks(blockType, includeSubClasses);
|
||||
}
|
||||
|
||||
@Override
|
||||
public ArrayList<PamDataBlock> getDataBlocks() {
|
||||
return makeDataBlockList(PamDataUnit.class, true);
|
||||
return pamConfiguration.getDataBlocks();
|
||||
}
|
||||
|
||||
public ArrayList<PamDataBlock> getPlottableDataBlocks(GeneralProjector generalProjector) {
|
||||
|
||||
ArrayList<PamDataBlock> blockList = new ArrayList<PamDataBlock>();
|
||||
PamProcess pP;
|
||||
Class unitClass;
|
||||
PanelOverlayDraw panelOverlayDraw;
|
||||
|
||||
for (int iU = 0; iU < pamControlledUnits.size(); iU++) {
|
||||
for (int iP = 0; iP < pamControlledUnits.get(iU)
|
||||
.getNumPamProcesses(); iP++) {
|
||||
pP = pamControlledUnits.get(iU).getPamProcess(iP);
|
||||
for (int j = 0; j < pP.getNumOutputDataBlocks(); j++) {
|
||||
if(pP.getOutputDataBlock(j).canDraw(generalProjector)) {
|
||||
blockList.add(pP.getOutputDataBlock(j));
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
return blockList;
|
||||
return pamConfiguration.getPlottableDataBlocks(generalProjector);
|
||||
}
|
||||
|
||||
/**
|
||||
@ -1728,38 +1627,9 @@ public class PamController implements PamControllerInterface, PamSettings {
|
||||
// }
|
||||
// }
|
||||
// }
|
||||
private ArrayList<PamDataBlock> makeDataBlockList(Class classType, boolean includSubClasses) {
|
||||
|
||||
ArrayList<PamDataBlock> blockList = new ArrayList<PamDataBlock>();
|
||||
PamProcess pP;
|
||||
Class unitClass;
|
||||
|
||||
for (int iU = 0; iU < pamControlledUnits.size(); iU++) {
|
||||
for (int iP = 0; iP < pamControlledUnits.get(iU)
|
||||
.getNumPamProcesses(); iP++) {
|
||||
pP = pamControlledUnits.get(iU).getPamProcess(iP);
|
||||
for (int j = 0; j < pP.getNumOutputDataBlocks(); j++) {
|
||||
//System.out.println("Comparing "+pP.getOutputDataBlock(j).getUnitClass().getCanonicalName()+" to "+classType.getCanonicalName());
|
||||
if ((unitClass = pP.getOutputDataBlock(j).getUnitClass()) == classType) {
|
||||
blockList.add(pP.getOutputDataBlock(j));
|
||||
}
|
||||
else if (includSubClasses) {
|
||||
if (classType != null && classType.isAssignableFrom(unitClass)) {
|
||||
blockList.add(pP.getOutputDataBlock(j));
|
||||
}
|
||||
// while ((unitClass = unitClass.getSuperclass()) != null) {
|
||||
// if (unitClass == classType) {
|
||||
// blockList.add(pP.getOutputDataBlock(j));
|
||||
// break;
|
||||
// }
|
||||
// }
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
return blockList;
|
||||
}
|
||||
// private ArrayList<PamDataBlock> makeDataBlockList(Class classType, boolean includSubClasses) {
|
||||
// return pamConfiguration.makeDataBlockList(classType, includSubClasses);
|
||||
// }
|
||||
|
||||
/**
|
||||
* Find a block of a given type with the id number, or null if the number
|
||||
@ -1771,10 +1641,7 @@ public class PamController implements PamControllerInterface, PamSettings {
|
||||
*/
|
||||
@Override
|
||||
public PamDataBlock getDataBlock(Class blockType, int id) {
|
||||
|
||||
ArrayList<PamDataBlock> blocks = getDataBlocks(blockType, true);
|
||||
if (id >= 0 && id < blocks.size()) return blocks.get(id);
|
||||
return null;
|
||||
return pamConfiguration.getDataBlock(blockType, id);
|
||||
}
|
||||
|
||||
/**
|
||||
@ -1786,23 +1653,7 @@ public class PamController implements PamControllerInterface, PamSettings {
|
||||
*/
|
||||
@Override
|
||||
public PamDataBlock getDataBlock(Class blockType, String name) {
|
||||
if (name == null) return null;
|
||||
ArrayList<PamDataBlock> blocks = getDataBlocks(blockType, true);
|
||||
for (PamDataBlock dataBlock:blocks) {
|
||||
if (name.equals(dataBlock.getLongDataName())) { // check for a long name match first
|
||||
return dataBlock;
|
||||
}
|
||||
if (dataBlock instanceof FFTDataBlock) {
|
||||
FFTDataBlock fb = (FFTDataBlock) dataBlock;
|
||||
if (name.equals(fb.getOldLongDataName())) {
|
||||
return dataBlock;
|
||||
}
|
||||
}
|
||||
if (name.equals(dataBlock.toString())) {
|
||||
return dataBlock;
|
||||
}
|
||||
}
|
||||
return null;
|
||||
return pamConfiguration.getDataBlock(blockType, name);
|
||||
}
|
||||
|
||||
/**
|
||||
@ -1811,20 +1662,7 @@ public class PamController implements PamControllerInterface, PamSettings {
|
||||
* @return block
|
||||
*/
|
||||
public PamDataBlock getDataBlockByLongName(String longName) {
|
||||
if (longName == null) return null;
|
||||
ArrayList<PamDataBlock> allBlocks = getDataBlocks();
|
||||
for (PamDataBlock dataBlock:allBlocks) {
|
||||
if (longName.equals(dataBlock.getLongDataName())) {
|
||||
return dataBlock;
|
||||
}
|
||||
if (dataBlock instanceof FFTDataBlock) {
|
||||
FFTDataBlock fb = (FFTDataBlock) dataBlock;
|
||||
if (longName.equals(fb.getOldLongDataName())) {
|
||||
return dataBlock;
|
||||
}
|
||||
}
|
||||
}
|
||||
return null;
|
||||
return pamConfiguration.getDataBlockByLongName(longName);
|
||||
}
|
||||
|
||||
/**
|
||||
@ -1911,11 +1749,7 @@ public class PamController implements PamControllerInterface, PamSettings {
|
||||
|
||||
MasterReferencePoint.notifyModelChanged(changeType);
|
||||
|
||||
// also tell all PamControlledUnits since they may want to find their data source
|
||||
// it that was created after they were - i.e. dependencies have got all muddled
|
||||
for (int i = 0; i < pamControlledUnits.size(); i++) {
|
||||
pamControlledUnits.get(i).notifyModelChanged(changeType);
|
||||
}
|
||||
pamConfiguration.notifyModelChanged(changeType);
|
||||
|
||||
PamSettingManager.getInstance().notifyModelChanged(changeType);
|
||||
|
||||
@ -1986,6 +1820,7 @@ public class PamController implements PamControllerInterface, PamSettings {
|
||||
private void changedThreading() {
|
||||
PamProcess pamProcess;
|
||||
int nP;
|
||||
ArrayList<PamControlledUnit> pamControlledUnits = pamConfiguration.getPamControlledUnits();
|
||||
for (int i = 0; i < pamControlledUnits.size(); i++) {
|
||||
nP = pamControlledUnits.get(i).getNumPamProcesses();
|
||||
for (int iP = 0; iP < nP; iP++) {
|
||||
@ -2019,13 +1854,7 @@ public class PamController implements PamControllerInterface, PamSettings {
|
||||
|
||||
@Override
|
||||
public Serializable getSettingsReference() {
|
||||
ArrayList<UsedModuleInfo> usedModules = new ArrayList<UsedModuleInfo>();
|
||||
for (int i = 0; i < pamControlledUnits.size(); i++) {
|
||||
usedModules.add(new UsedModuleInfo(pamControlledUnits.get(i).getClass().getName(),
|
||||
pamControlledUnits.get(i).getUnitType(),
|
||||
pamControlledUnits.get(i).getUnitName()));
|
||||
}
|
||||
return usedModules;
|
||||
return pamConfiguration.getSettingsReference();
|
||||
}
|
||||
|
||||
@Override
|
||||
@ -2067,10 +1896,7 @@ public class PamController implements PamControllerInterface, PamSettings {
|
||||
|
||||
// also tell all PamControlledUnits since they may want to find their data source
|
||||
// it that was created after they were - i.e. dependencies have got all muddled
|
||||
for (int i = 0; i < pamControlledUnits.size(); i++) {
|
||||
pamControlledUnits.get(i).notifyModelChanged(DESTROY_EVERYTHING);
|
||||
}
|
||||
pamControlledUnits = null;
|
||||
pamConfiguration.destroyModel();
|
||||
|
||||
PamSettingManager.getInstance().reset();
|
||||
|
||||
@ -2395,6 +2221,7 @@ public class PamController implements PamControllerInterface, PamSettings {
|
||||
public void loadOldSettings(PamSettingsGroup settingsGroup) {
|
||||
loadOldSettings(settingsGroup, true);
|
||||
}
|
||||
|
||||
/**
|
||||
* Called to load a specific set of PAMGUARD settings in
|
||||
* viewer mode, which were previously loaded in from a
|
||||
@ -2499,7 +2326,7 @@ public class PamController implements PamControllerInterface, PamSettings {
|
||||
continue;
|
||||
}
|
||||
aUnit = findControlledUnit(moduleClass, aModuleInfo.unitName);
|
||||
currentPos = pamControlledUnits.indexOf(aUnit);
|
||||
currentPos = pamConfiguration.getControlledUnitIndex(aUnit);
|
||||
if (currentPos >= 0) {
|
||||
temp = orderLUT[nFound];
|
||||
orderLUT[nFound] = currentPos;
|
||||
@ -2865,4 +2692,12 @@ public class PamController implements PamControllerInterface, PamSettings {
|
||||
return this.globalMediumManager;
|
||||
}
|
||||
|
||||
/**
|
||||
* Gt the main PAMGuard configuration (list of connected modules).
|
||||
* @return the pamConfiguration
|
||||
*/
|
||||
public PamConfiguration getPamConfiguration() {
|
||||
return pamConfiguration;
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
@ -25,7 +25,7 @@ import java.util.ArrayList;
|
||||
|
||||
import javax.swing.JFrame;
|
||||
|
||||
import PamModel.PamModelInterface;
|
||||
import PamModel.PamModel;
|
||||
import PamModel.PamModuleInfo;
|
||||
import PamView.GuiFrameManager;
|
||||
import PamView.PamViewInterface;
|
||||
@ -102,7 +102,7 @@ public interface PamControllerInterface {
|
||||
*
|
||||
* @return Reference to the PamGuard model
|
||||
*/
|
||||
public PamModelInterface getModelInterface();
|
||||
public PamModel getModelInterface();
|
||||
|
||||
/**
|
||||
* Instruction to the controller (probably from a menu command inthe view)
|
||||
|
||||
@ -293,7 +293,7 @@ public class PamSettingManager {
|
||||
* call this for at least one set of settings. Often the PamSettings
|
||||
* is implemented by the class that extends PamControlledunit, but
|
||||
* it's also possible to have multiple sub modules, processes or displays
|
||||
* implemnt PamSettings so that different settings for different bits of
|
||||
* implement PamSettings so that different settings for different bits of
|
||||
* a PamControlledUnit are stored separately.
|
||||
* @see PamSettings
|
||||
* @see PamControlledUnit
|
||||
|
||||
@ -31,12 +31,12 @@ public class PamguardVersionInfo {
|
||||
* Version number, major version.minorversion.sub-release.
|
||||
* Note: can't go higher than sub-release 'f'
|
||||
*/
|
||||
static public final String version = "2.02.09b";
|
||||
static public final String version = "2.02.09c";
|
||||
|
||||
/**
|
||||
* Release date
|
||||
*/
|
||||
static public final String date = "29 June 2023";
|
||||
static public final String date = "10 November 2023";
|
||||
|
||||
// /**
|
||||
// * Release type - Beta or Core
|
||||
|
||||
@ -79,7 +79,7 @@ import PamUtils.FileFinder;
|
||||
* PamController.
|
||||
*
|
||||
*/
|
||||
final public class PamModel implements PamModelInterface, PamSettings {
|
||||
final public class PamModel implements PamSettings {
|
||||
|
||||
private PamController pamController;
|
||||
|
||||
@ -1000,7 +1000,6 @@ final public class PamModel implements PamModelInterface, PamSettings {
|
||||
|
||||
}
|
||||
|
||||
@Override
|
||||
public boolean modelSettings(JFrame frame) {
|
||||
PamModelSettings newSettings = ThreadingDialog.showDialog(frame, pamModelSettings);
|
||||
if (newSettings != null) {
|
||||
|
||||
@ -29,6 +29,7 @@ import javax.swing.JFrame;
|
||||
* order that the PamController and the PamView can interface with the
|
||||
* model.
|
||||
*/
|
||||
@Deprecated
|
||||
public interface PamModelInterface {
|
||||
|
||||
/**
|
||||
|
||||
@ -10,6 +10,7 @@ import javax.swing.JMenu;
|
||||
import javax.swing.JMenuItem;
|
||||
import javax.swing.JOptionPane;
|
||||
|
||||
import PamController.PamConfiguration;
|
||||
import PamController.PamControlledUnit;
|
||||
import PamController.PamController;
|
||||
import PamController.PamControllerInterface;
|
||||
@ -34,6 +35,9 @@ public class PamModuleInfo implements PamDependent{
|
||||
private Class moduleClass;
|
||||
private String toolTipText;
|
||||
|
||||
private static final Class[] constrParams1 = {PamConfiguration.class, String.class};
|
||||
private static final Class[] constrParams2 = {String.class};
|
||||
|
||||
/**
|
||||
* A list of possible GUI types the module can have. These are received from flags in PAMGuiManager();
|
||||
*/
|
||||
@ -209,7 +213,7 @@ public class PamModuleInfo implements PamDependent{
|
||||
dependencyManager.checkDependency(parentFrame, moduleInfo, true);
|
||||
}
|
||||
// create a new PamControlledUnit and add it to PamGuard ...
|
||||
PamControllerInterface pamController = PamController.getInstance();
|
||||
PamController pamController = PamController.getInstance();
|
||||
|
||||
pamController.addModule(parentFrame, moduleInfo);
|
||||
}
|
||||
@ -219,38 +223,63 @@ public class PamModuleInfo implements PamDependent{
|
||||
public AddModuleMenuAction getMenuAction(Frame parentFrame) {
|
||||
return new AddModuleMenuAction(parentFrame, this);
|
||||
}
|
||||
|
||||
|
||||
public PamControlledUnit create(String unitName) {
|
||||
return create(null, unitName);
|
||||
}
|
||||
|
||||
public PamControlledUnit create(PamConfiguration pamConfiguration, String unitName) {
|
||||
|
||||
PamControlledUnit newUnit = null;
|
||||
Class[] paramList = new Class[1];
|
||||
paramList[0] = unitName.getClass();
|
||||
// Class[] paramList = new Class[1];
|
||||
// paramList[0] = unitName.getClass();
|
||||
boolean error = false;
|
||||
try {
|
||||
Constructor constructor = moduleClass.getConstructor(paramList);
|
||||
// Debug.out.println("unitName:"+ unitName);
|
||||
newUnit = (PamControlledUnit) constructor.newInstance(unitName);
|
||||
Constructor constructor = moduleClass.getConstructor(constrParams1);
|
||||
newUnit = (PamControlledUnit) constructor.newInstance(pamConfiguration, unitName);
|
||||
newUnit.setPamModuleInfo(this);
|
||||
}
|
||||
catch (Exception Ex) {
|
||||
String title = "Error loading module";
|
||||
String msg = "There was an error trying to load " + unitName + ".<p>" +
|
||||
"If this is a core Pamguard module, please copy the error message text and email to " +
|
||||
"support@pamguard.org.<p>" +
|
||||
"If this is a plug-in, the error may have been caused by an incompatibility between " +
|
||||
"it and this version of PAMGuard, or a problem with the code. Please check the developer's website for help.<p>" +
|
||||
"This module will not be loaded.";
|
||||
String help = null;
|
||||
int ans = WarnOnce.showWarning(title, msg, WarnOnce.WARNING_MESSAGE, help, Ex);
|
||||
System.err.println("Exception while loading " + Ex.getMessage());
|
||||
Ex.printStackTrace();
|
||||
return null;
|
||||
}
|
||||
|
||||
if (newUnit == null) {
|
||||
try {
|
||||
Constructor constructor = moduleClass.getConstructor(constrParams2);
|
||||
newUnit = (PamControlledUnit) constructor.newInstance(unitName);
|
||||
newUnit.setPamModuleInfo(this);
|
||||
}
|
||||
catch (Exception Ex) {
|
||||
String title = "Error loading module";
|
||||
String msg = "There was an error trying to load " + unitName + ".<p>" +
|
||||
"If this is a core Pamguard module, please copy the error message text and email to " +
|
||||
"support@pamguard.org.<p>" +
|
||||
"If this is a plug-in, the error may have been caused by an incompatibility between " +
|
||||
"it and this version of PAMGuard, or a problem with the code. Please check the developer's website for help.<p>" +
|
||||
"This module will not be loaded.";
|
||||
String help = null;
|
||||
int ans = WarnOnce.showWarning(title, msg, WarnOnce.WARNING_MESSAGE, help, Ex);
|
||||
System.err.println("Exception while loading " + Ex.getMessage());
|
||||
Ex.printStackTrace();
|
||||
return null;
|
||||
}
|
||||
}
|
||||
|
||||
setNInstances(nInstances + 1);
|
||||
|
||||
return newUnit;
|
||||
}
|
||||
|
||||
private Constructor findConstructor() throws NoSuchMethodException, SecurityException {
|
||||
Constructor constructor = null;
|
||||
try {
|
||||
constructor = moduleClass.getConstructor(constrParams1);
|
||||
return constructor;
|
||||
} catch (NoSuchMethodException | SecurityException e1) {
|
||||
}
|
||||
|
||||
constructor = moduleClass.getConstructor(constrParams2);
|
||||
return constructor;
|
||||
}
|
||||
|
||||
private void moduleRemoved(PamControlledUnit controlledUnit) {
|
||||
|
||||
setNInstances(nInstances - 1);
|
||||
@ -376,7 +405,7 @@ public class PamModuleInfo implements PamDependent{
|
||||
}
|
||||
|
||||
public void actionPerformed(ActionEvent e) {
|
||||
int ans = JOptionPane.showConfirmDialog(pamControlledUnit.getPamView().getGuiFrame(),
|
||||
int ans = JOptionPane.showConfirmDialog(pamControlledUnit.getGuiFrame(),
|
||||
"Do you really want to remove the module "
|
||||
+ pamControlledUnit.getUnitName());
|
||||
if (ans == JOptionPane.YES_OPTION) {
|
||||
|
||||
@ -89,7 +89,8 @@ public class TxtFileUtils {
|
||||
//5/08/2022 - there was a bug here where there is some sort of invisible character that does not appear on the
|
||||
//print screen - the only way you can tell is the char array is greater than the number of digits - removed all non numeric
|
||||
//characters.
|
||||
String number = new String(recordsOnLine[i].strip().replaceAll("[^\\d.]", ""));
|
||||
// updated again on 15/11/23 to include - signs, or you end up with the abs(of every number!)
|
||||
String number = new String(recordsOnLine[i].strip().replaceAll("[^\\d.-]", ""));
|
||||
dat = Double.valueOf(number);
|
||||
//dat = DecimalFormat.getNumberInstance().parse(new String(recordsOnLine[i].strip().toCharArray())).doubleValue();
|
||||
}
|
||||
|
||||
@ -89,7 +89,6 @@ import PamController.PamguardVersionInfo;
|
||||
import PamController.settings.SettingsImport;
|
||||
import PamModel.CommonPluginInterface;
|
||||
import PamModel.PamModel;
|
||||
import PamModel.PamModelInterface;
|
||||
import PamModel.PamModuleInfo;
|
||||
import PamModel.PamPluginInterface;
|
||||
import PamModel.AboutPluginDisplay;
|
||||
@ -135,11 +134,14 @@ public class PamGui extends PamView implements WindowListener, PamSettings {
|
||||
* Outer layered pane which allows things to be added the GUI.
|
||||
*/
|
||||
private JLayeredPane layeredPane;
|
||||
private PamController pamController;
|
||||
|
||||
public PamGui(PamControllerInterface pamControllerInterface,
|
||||
PamModelInterface pamModelInterface, int frameNumber)
|
||||
public PamGui(PamController pamControllerInterface,
|
||||
PamModel pamModelInterface, int frameNumber)
|
||||
{
|
||||
super(pamControllerInterface, pamModelInterface, frameNumber);
|
||||
|
||||
this.pamController = pamControllerInterface;
|
||||
|
||||
startMenuEnabler = new MenuItemEnabler();
|
||||
stopMenuEnabler = new MenuItemEnabler();
|
||||
@ -1201,7 +1203,7 @@ public class PamGui extends PamView implements WindowListener, PamSettings {
|
||||
|
||||
class menuShowObjectDiagram implements ActionListener {
|
||||
public void actionPerformed(ActionEvent ev){
|
||||
PamObjectViewer.Show(getGuiFrame());
|
||||
PamObjectViewer.Show(getGuiFrame(), pamController.getPamConfiguration());
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
@ -26,7 +26,7 @@ import javax.swing.JMenu;
|
||||
import javax.swing.JMenuBar;
|
||||
import javax.swing.JMenuItem;
|
||||
|
||||
import PamModel.PamModelInterface;
|
||||
import PamModel.PamModel;
|
||||
|
||||
/**
|
||||
* @author dgillespie
|
||||
@ -39,7 +39,7 @@ import PamModel.PamModelInterface;
|
||||
*
|
||||
*/
|
||||
public class PamMenu {
|
||||
static public JMenuBar createBasicMenu(PamModelInterface pamModelInterface,
|
||||
static public JMenuBar createBasicMenu(PamModel pamModelInterface,
|
||||
ActionListener actionListener) {
|
||||
|
||||
JMenuBar menuBar = new JMenuBar();
|
||||
@ -52,7 +52,7 @@ public class PamMenu {
|
||||
return menuBar;
|
||||
}
|
||||
|
||||
static public JMenu fileMenu(PamModelInterface pamModelInterface,
|
||||
static public JMenu fileMenu(PamModel pamModelInterface,
|
||||
ActionListener actionListener) {
|
||||
JMenuItem menuItem;
|
||||
JMenu menu = new JMenu("File");
|
||||
@ -64,7 +64,7 @@ public class PamMenu {
|
||||
return menu;
|
||||
}
|
||||
|
||||
static public JMenu loggingMenu(PamModelInterface pamModelInterface,
|
||||
static public JMenu loggingMenu(PamModel pamModelInterface,
|
||||
ActionListener actionListener) {
|
||||
JMenuItem menuItem;
|
||||
JMenu menu = new JMenu("Logging");
|
||||
@ -76,7 +76,7 @@ public class PamMenu {
|
||||
return menu;
|
||||
}
|
||||
|
||||
static public JMenu detectionMenu(PamModelInterface pamModelInterface,
|
||||
static public JMenu detectionMenu(PamModel pamModelInterface,
|
||||
ActionListener actionListener) {
|
||||
JMenu menu = new JMenu("Detection");
|
||||
JMenuItem menuItem;
|
||||
@ -108,7 +108,7 @@ public class PamMenu {
|
||||
return menu;
|
||||
}
|
||||
|
||||
static public JMenu displayMenu(PamModelInterface pamModelInterface,
|
||||
static public JMenu displayMenu(PamModel pamModelInterface,
|
||||
ActionListener actionListener) {
|
||||
JMenu menu = new JMenu("Display");
|
||||
JMenuItem menuItem;
|
||||
|
||||
@ -42,6 +42,7 @@ import javax.swing.Timer;
|
||||
import javax.swing.WindowConstants;
|
||||
|
||||
import PamController.NewModuleDialog;
|
||||
import PamController.PamConfiguration;
|
||||
import PamController.PamControlledUnit;
|
||||
import PamController.PamControlledUnitSettings;
|
||||
import PamController.PamController;
|
||||
@ -114,9 +115,11 @@ public class PamObjectViewer implements PamViewInterface, ComponentListener,
|
||||
|
||||
private Stroke arrowStroke, instantArrowStroke;
|
||||
|
||||
private PamConfiguration pamConfiguration;
|
||||
|
||||
// Font controllerFont, processFont, datablockFont;
|
||||
|
||||
private PamObjectViewer(JFrame frame) {
|
||||
private PamObjectViewer(Frame frame) {
|
||||
|
||||
arrowStroke = new BasicStroke(1.5f);
|
||||
instantArrowStroke = new BasicStroke(1.5f);
|
||||
@ -125,23 +128,27 @@ public class PamObjectViewer implements PamViewInterface, ComponentListener,
|
||||
|
||||
objectFrame = new ObjectFrame(frame);
|
||||
|
||||
MakeDiagram();
|
||||
// MakeDiagram();
|
||||
|
||||
PamController.getInstance().addView(this);
|
||||
|
||||
PamSettingManager.getInstance().registerSettings(this);
|
||||
}
|
||||
|
||||
static public PamObjectViewer getObjectViewer(JFrame frame) {
|
||||
static public PamObjectViewer getObjectViewer(Frame frame) {
|
||||
if (singleInstance == null) {
|
||||
singleInstance = new PamObjectViewer(frame);
|
||||
}
|
||||
return singleInstance;
|
||||
}
|
||||
|
||||
static public void Show(JFrame frame) {
|
||||
static public void Show(Frame frame, PamConfiguration pamConfiguration) {
|
||||
|
||||
getObjectViewer(frame).setConfiguration(pamConfiguration);
|
||||
getObjectViewer(frame).objectFrame.setVisible(true);
|
||||
|
||||
singleInstance.MakeDiagram();
|
||||
|
||||
// Go through all of the processes/datablocks in every view and update button/tooltip text.
|
||||
// Mostly done for the FFT Engine process because it includes the FFT size in the
|
||||
// process name, and without this code the name would get set the first time you open
|
||||
@ -164,6 +171,10 @@ public class PamObjectViewer implements PamViewInterface, ComponentListener,
|
||||
}
|
||||
}
|
||||
|
||||
private void setConfiguration(PamConfiguration pamConfiguration) {
|
||||
this.pamConfiguration = pamConfiguration;
|
||||
}
|
||||
|
||||
void MakeDiagram() {
|
||||
|
||||
if (pamObjectViewerSettings.viewStyle == PamObjectViewerSettings.VIEWBYPROCESS) {
|
||||
@ -180,12 +191,16 @@ public class PamObjectViewer implements PamViewInterface, ComponentListener,
|
||||
private void makeControllerDiagram() {
|
||||
|
||||
clearDiagram();
|
||||
PamControllerInterface pamController = PamController.getInstance();
|
||||
|
||||
if (pamConfiguration == null) {
|
||||
return;
|
||||
}
|
||||
|
||||
PamControlledUnit pamControlledUnit;
|
||||
PamControllerView pamControllerView;
|
||||
controllerList = new ArrayList<PamControllerView>();
|
||||
for (int iUnit = 0; iUnit < pamController.getNumControlledUnits(); iUnit++) {
|
||||
pamControlledUnit = pamController.getControlledUnit(iUnit);
|
||||
for (int iUnit = 0; iUnit < pamConfiguration.getNumControlledUnits(); iUnit++) {
|
||||
pamControlledUnit = pamConfiguration.getControlledUnit(iUnit);
|
||||
if (pamControlledUnit.getNumPamProcesses() == 0
|
||||
&& pamObjectViewerSettings.showProcesslessModules == false) {
|
||||
continue;
|
||||
@ -198,25 +213,6 @@ public class PamObjectViewer implements PamViewInterface, ComponentListener,
|
||||
|
||||
}
|
||||
|
||||
// private void makeProcesslessModules() {
|
||||
// PamControllerInterface pamController = PamController.getInstance();
|
||||
// PamControlledUnit pamControlledUnit;
|
||||
// PamControllerView pamControllerView;
|
||||
// if (controllerList == null)
|
||||
// controllerList = new ArrayList<PamControllerView>();
|
||||
// for (int iUnit = 0; iUnit < pamController.getNumControlledUnits();
|
||||
// iUnit++) {
|
||||
// pamControlledUnit = pamController.getControlledUnit(iUnit);
|
||||
// if (pamControlledUnit.getNumPamProcesses() > 0) {
|
||||
// continue;
|
||||
// }
|
||||
// pamControllerView = new PamControllerView(pamControlledUnit);
|
||||
// controllerList.add(pamControllerView);
|
||||
// layoutPanel.add(pamControllerView);
|
||||
// pamControllerView.addComponentListener(this);
|
||||
// }
|
||||
//
|
||||
// }
|
||||
private void layoutControllerDiagram() {
|
||||
if (controllerList == null) {
|
||||
return;
|
||||
@ -285,11 +281,10 @@ public class PamObjectViewer implements PamViewInterface, ComponentListener,
|
||||
int x = xStart;
|
||||
int y = yStart;
|
||||
|
||||
PamControllerInterface pamController = PamController.getInstance();
|
||||
PamControlledUnit pamControlledUnit;
|
||||
PamProcess pamProcess;
|
||||
for (int iUnit = 0; iUnit < pamController.getNumControlledUnits(); iUnit++) {
|
||||
pamControlledUnit = pamController.getControlledUnit(iUnit);
|
||||
for (int iUnit = 0; iUnit < pamConfiguration.getNumControlledUnits(); iUnit++) {
|
||||
pamControlledUnit = pamConfiguration.getControlledUnit(iUnit);
|
||||
for (int iP = 0; iP < pamControlledUnit.getNumPamProcesses(); iP++) {
|
||||
pamProcess = pamControlledUnit.getPamProcess(iP);
|
||||
pamProcessView = new PamProcessView(pamControlledUnit,
|
||||
@ -417,7 +412,7 @@ public class PamObjectViewer implements PamViewInterface, ComponentListener,
|
||||
|
||||
class ObjectFrame extends JFrame implements ActionListener {
|
||||
|
||||
ObjectFrame(JFrame frame) {
|
||||
ObjectFrame(Frame frame) {
|
||||
setTitle("Pamguard Data Model");
|
||||
|
||||
// fixed case of Resources 17/8/08 DG.
|
||||
@ -599,6 +594,9 @@ public class PamObjectViewer implements PamViewInterface, ComponentListener,
|
||||
int bestYGap;
|
||||
Rectangle sourceBounds, destBounds;
|
||||
hasInstant = false;
|
||||
if (controllerList == null) {
|
||||
return;
|
||||
}
|
||||
for (int i = 0; i < controllerList.size(); i++) {
|
||||
pamControllerView = controllerList.get(i);
|
||||
pamControlledUnit = pamControllerView.pamControlledUnit;
|
||||
|
||||
@ -24,7 +24,7 @@ import javax.swing.JFrame;
|
||||
|
||||
import PamController.PamControlledUnit;
|
||||
import PamController.PamControllerInterface;
|
||||
import PamModel.PamModelInterface;
|
||||
import PamModel.PamModel;
|
||||
import javafx.application.Platform;
|
||||
|
||||
/**
|
||||
@ -36,7 +36,7 @@ abstract public class PamView implements PamViewInterface {
|
||||
|
||||
protected PamControllerInterface pamControllerInterface;
|
||||
|
||||
protected PamModelInterface pamModelInterface;
|
||||
protected PamModel pamModelInterface;
|
||||
|
||||
/**
|
||||
* Frame for main window associated with this view (i.e a PamGUI).
|
||||
@ -47,7 +47,7 @@ abstract public class PamView implements PamViewInterface {
|
||||
|
||||
|
||||
public PamView(PamControllerInterface pamControllerInterface,
|
||||
PamModelInterface pamModelInterface, int frameNumber) {
|
||||
PamModel pamModelInterface, int frameNumber) {
|
||||
this.pamControllerInterface = pamControllerInterface;
|
||||
this.pamModelInterface = pamModelInterface;
|
||||
this.frameNumber = frameNumber;
|
||||
|
||||
@ -11,6 +11,7 @@ import javax.swing.JComponent;
|
||||
import javax.swing.JMenuItem;
|
||||
import javax.swing.JPopupMenu;
|
||||
import javax.swing.JScrollPane;
|
||||
import javax.swing.JTable;
|
||||
import javax.swing.ListSelectionModel;
|
||||
import javax.swing.SwingUtilities;
|
||||
import javax.swing.table.AbstractTableModel;
|
||||
@ -128,6 +129,14 @@ public abstract class DataBlockTableView<T extends PamDataUnit> {
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* Get table. Allows adding of more menu handlers, etc.
|
||||
* @return the table object.
|
||||
*/
|
||||
public JTable getTable() {
|
||||
return testTable;
|
||||
}
|
||||
|
||||
/**
|
||||
* Set allowing of multiple row selection.
|
||||
* @param allow
|
||||
@ -228,7 +237,7 @@ public abstract class DataBlockTableView<T extends PamDataUnit> {
|
||||
* @param tableRow
|
||||
* @return data unit for the table row.
|
||||
*/
|
||||
private final T getDataUnit(int tableRow) {
|
||||
protected final T getDataUnit(int tableRow) {
|
||||
synchronized (copySynch) {
|
||||
int rowIndex = getDataIndexForRow(tableRow);
|
||||
if (rowIndex < 0) return null;
|
||||
@ -377,7 +386,7 @@ public abstract class DataBlockTableView<T extends PamDataUnit> {
|
||||
* so consider changing the row selection
|
||||
* @param e
|
||||
*/
|
||||
private void checkRowSelection(MouseEvent e) {
|
||||
protected void checkRowSelection(MouseEvent e) {
|
||||
int tableRow = testTable.rowAtPoint(e.getPoint());
|
||||
int currentRow = testTable.getSelectedRow();
|
||||
if (tableRow != currentRow) {
|
||||
@ -389,6 +398,16 @@ public abstract class DataBlockTableView<T extends PamDataUnit> {
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* Put the getColumnName function out here, so that subclasses can
|
||||
* more easily override it than if it's buried in the table model
|
||||
* @param column
|
||||
* @return colum name
|
||||
*/
|
||||
public String getColumnName(int column) {
|
||||
return getColumnNames()[column];
|
||||
}
|
||||
|
||||
private class ViewScrollObserver implements PamScrollObserver {
|
||||
|
||||
@Override
|
||||
@ -448,7 +467,7 @@ public abstract class DataBlockTableView<T extends PamDataUnit> {
|
||||
*/
|
||||
@Override
|
||||
public String getColumnName(int column) {
|
||||
return getColumnNames()[column];
|
||||
return DataBlockTableView.this.getColumnName(column);
|
||||
}
|
||||
|
||||
/* (non-Javadoc)
|
||||
|
||||
@ -154,9 +154,13 @@ public class GroupedSourcePanel extends SourcePanel {
|
||||
|
||||
public void setChannelGroups(int[] channelGroups) {
|
||||
if (channelGroups == null) return;
|
||||
for (int i = 0; i < Math.min(channelGroups.length, PamConstants.MAX_CHANNELS); i++) {
|
||||
for (int i = 0; i < Math.min(channelGroups.length, PamConstants.MAX_CHANNELS); i++) { try {
|
||||
groupList[i].setSelectedIndex(channelGroups[i]);
|
||||
}
|
||||
catch (Exception e) {
|
||||
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
public static void addComponent(JPanel panel, Component p, GridBagConstraints constraints){
|
||||
|
||||
@ -343,7 +343,7 @@ public class RecorderTabPanel implements PamTabPanel, RecorderView {
|
||||
class SettingsButtonListener implements ActionListener {
|
||||
|
||||
public void actionPerformed(ActionEvent e) {
|
||||
recorderControl.recordSettingsDialog(recorderControl.getPamView().getGuiFrame());
|
||||
recorderControl.recordSettingsDialog(recorderControl.getGuiFrame());
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
@ -107,6 +107,7 @@ import PamView.GeneralProjector;
|
||||
import PamView.ColourArray.ColourArrayType;
|
||||
import PamView.dialog.PamLabel;
|
||||
import PamView.PamColors;
|
||||
import PamView.PamView;
|
||||
import PamView.hidingpanel.HidingDialogPanel;
|
||||
import PamView.panel.CornerLayout;
|
||||
import PamView.panel.CornerLayoutContraint;
|
||||
@ -275,11 +276,13 @@ InternalFrameListener, DisplayPanelContainer, SpectrogramParametersUser, PamSett
|
||||
// }
|
||||
if (spectrogramParameters == null) {
|
||||
this.spectrogramParameters = new SpectrogramParameters();
|
||||
// setSettings(); // force up the dialog.
|
||||
SpectrogramParameters newParams = SpectrogramParamsDialog
|
||||
.showDialog(userDisplayControl.getPamView().getGuiFrame(), spectrogramPanels, spectrogramParameters);
|
||||
if (newParams != null) {
|
||||
this.spectrogramParameters = newParams;
|
||||
PamView view = userDisplayControl.getPamView();
|
||||
if (view != null) {
|
||||
SpectrogramParameters newParams = SpectrogramParamsDialog
|
||||
.showDialog(userDisplayControl.getGuiFrame(), spectrogramPanels, spectrogramParameters);
|
||||
if (newParams != null) {
|
||||
this.spectrogramParameters = newParams;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@ -1184,7 +1187,7 @@ InternalFrameListener, DisplayPanelContainer, SpectrogramParametersUser, PamSett
|
||||
// SpectrogramParameters newParams = SpectrogramParamsDialog
|
||||
// .showDialog(userDisplayControl.getPamView().getGuiFrame(), this.getOverlayMarker(), spectrogramParameters);
|
||||
SpectrogramParameters newParams = SpectrogramParamsDialog
|
||||
.showDialog(userDisplayControl.getPamView().getGuiFrame(), spectrogramPanels, spectrogramParameters);
|
||||
.showDialog(userDisplayControl.getGuiFrame(), spectrogramPanels, spectrogramParameters);
|
||||
|
||||
|
||||
if (newParams == null) return;
|
||||
|
||||
@ -62,7 +62,7 @@ public class AlarmOfflineTask extends OfflineTask<PamDataUnit> {
|
||||
|
||||
@Override
|
||||
public boolean callSettings() {
|
||||
Frame frame = alarmControl.getPamView().getGuiFrame();
|
||||
Frame frame = alarmControl.getGuiFrame();
|
||||
boolean ok = alarmControl.showAlarmDialog(frame);
|
||||
if (ok) {
|
||||
setParentDataBlock(alarmProcess.getSourceDataBlock());
|
||||
|
||||
@ -11,7 +11,7 @@ public class ArraySensorParams implements Serializable, Cloneable, ManagedParame
|
||||
|
||||
public static final long serialVersionUID = 1L;
|
||||
|
||||
public int readIntervalMillis = 1000;
|
||||
public volatile int readIntervalMillis = 1000;
|
||||
|
||||
private ArrayDisplayParameters arrayDisplayParameters;
|
||||
|
||||
|
||||
@ -45,7 +45,8 @@ public class ArraySensorProcess extends PamProcess {
|
||||
while(true) {
|
||||
readData();
|
||||
try {
|
||||
Thread.sleep(analogSensorControl.getAnalogSensorParams().readIntervalMillis);
|
||||
int slptime = analogSensorControl.getAnalogSensorParams().readIntervalMillis;
|
||||
Thread.sleep(slptime);
|
||||
} catch (InterruptedException e) {
|
||||
e.printStackTrace();
|
||||
}
|
||||
|
||||
@ -139,7 +139,7 @@ public class BrainBoxDevices implements AnalogDeviceType, PamSettings{
|
||||
double sensData = BBED549.hexToEngineering(bbRanges[item], sensInts);
|
||||
double paramValue = calibration.rawToValue(sensData, calibrationData[item]);
|
||||
analogDevicesManager.notifyData(new ItemAllData(item, sensInts, sensData, paramValue));
|
||||
// System.out.printf("Read item %d, chan %d, int %d, real %3.5f, param %3.5f\n", iChan, chan, sensInts, sensData, paramValue);
|
||||
// System.out.printf("Read item %d, chan %d, int %d, real %3.5f, param %3.5f\n", 0, chan, sensInts, sensData, paramValue);
|
||||
sayError(null);
|
||||
return new AnalogSensorData(sensData, paramValue);
|
||||
|
||||
|
||||
@ -221,7 +221,7 @@ public class AnalogDiagnosticsDisplay extends UserDisplayComponentAdapter implem
|
||||
break;
|
||||
case 3:
|
||||
if (lastUpdate[rowIndex] > 0) {
|
||||
return PamCalendar.formatTime(lastUpdate[rowIndex]);
|
||||
return PamCalendar.formatTime(lastUpdate[rowIndex], true);
|
||||
}
|
||||
break;
|
||||
case 4:
|
||||
|
||||
@ -22,7 +22,7 @@ public class AutecPhonesControl extends PamControlledUnit {
|
||||
}
|
||||
|
||||
public Frame getGuiFrame() {
|
||||
return super.getPamView().getGuiFrame();
|
||||
return super.getGuiFrame();
|
||||
}
|
||||
class AutecProcess extends PamProcess {
|
||||
|
||||
|
||||
@ -22,6 +22,7 @@ public class BLOfflineTask extends OfflineTask {
|
||||
this.bearingLocaliserControl = bearingLocaliserControl;
|
||||
bearingProcess = bearingLocaliserControl.getBearingProcess();
|
||||
this.addRequiredDataBlock(rawOrFFTBlock = bearingProcess.getParentDataBlock());
|
||||
addAffectedDataBlock(detectionBlock);
|
||||
// PamDataBlock detectionSource = bearingLocaliserControl.getDetectionMonitor().getParentDataBlock();
|
||||
// this.setParentDataBlock(detectionSource);
|
||||
// setParentDataBlock(bearingProcess.getParentDataBlock());
|
||||
|
||||
@ -929,7 +929,7 @@ PamSettingsSource, DataOutputStore {
|
||||
protected void process(List<BinaryMapMakeProgress> chunks) {
|
||||
if (PamGUIManager.isSwing()) {
|
||||
if (binaryMapDialog == null) {
|
||||
binaryMapDialog = BinaryMapMakingDialog.showDialog(getPamView().getGuiFrame());
|
||||
binaryMapDialog = BinaryMapMakingDialog.showDialog(PamController.getMainFrame());
|
||||
}
|
||||
super.process(chunks);
|
||||
for (int i = 0; i < chunks.size(); i++) {
|
||||
@ -2376,7 +2376,7 @@ PamSettingsSource, DataOutputStore {
|
||||
* Get the unit type for the binary store.
|
||||
* @return the binary store unit type.
|
||||
*/
|
||||
private static String getBinaryUnitType() {
|
||||
public static String getBinaryUnitType() {
|
||||
return defUnitType;
|
||||
}
|
||||
|
||||
|
||||
@ -2771,7 +2771,7 @@ public class ClickBTDisplay extends ClickDisplay implements PamObserver, PamSett
|
||||
|
||||
BTDisplayParameters newParameters =
|
||||
ClickDisplayDialog.showDialog(clickControl,
|
||||
clickControl.getPamView().getGuiFrame(), btDisplayParameters);
|
||||
clickControl.getGuiFrame(), btDisplayParameters);
|
||||
if (newParameters != null){
|
||||
btDisplayParameters = newParameters.clone();
|
||||
if (getVScaleManager() != null) {
|
||||
|
||||
@ -44,6 +44,7 @@ import binaryFileStorage.BinaryStore;
|
||||
import Filters.FilterDialog;
|
||||
import Filters.FilterParams;
|
||||
import Localiser.detectionGroupLocaliser.GroupDetection;
|
||||
import PamController.PamConfiguration;
|
||||
import PamController.PamControlledUnit;
|
||||
import PamController.PamControlledUnitGUI;
|
||||
import PamController.PamControlledUnitSettings;
|
||||
@ -97,6 +98,7 @@ import dataPlotsFX.data.TDDataProviderRegisterFX;
|
||||
import detectionPlotFX.data.DDPlotRegister;
|
||||
import detectionPlotFX.rawDDPlot.ClickDDPlotProvider;
|
||||
import fftManager.fftorganiser.FFTDataOrganiser;
|
||||
import offlineProcessing.OfflineTaskGroup;
|
||||
|
||||
/**
|
||||
* Main Controller for click detection.
|
||||
@ -207,9 +209,22 @@ public class ClickControl extends PamControlledUnit implements PamSettings {
|
||||
|
||||
public static final String UNITTYPE = "Click Detector";
|
||||
|
||||
/**
|
||||
* Old style constructor which only gets a name
|
||||
* @param name
|
||||
*/
|
||||
public ClickControl(String name) {
|
||||
this(null, name);
|
||||
}
|
||||
|
||||
/**
|
||||
* New style constructor which get a configuraiton and a name.
|
||||
* @param pamConfiguration
|
||||
* @param name
|
||||
*/
|
||||
public ClickControl(PamConfiguration pamConfiguration, String name) {
|
||||
|
||||
super(UNITTYPE, name);
|
||||
super(pamConfiguration, UNITTYPE, name);
|
||||
|
||||
sortDataBlockPrefix();
|
||||
|
||||
@ -220,7 +235,6 @@ public class ClickControl extends PamControlledUnit implements PamSettings {
|
||||
// }
|
||||
clickControl = this;
|
||||
|
||||
|
||||
angleVetoes = new AngleVetoes(this);
|
||||
|
||||
offlineToolbar = new OfflineToolbar(this);
|
||||
@ -288,6 +302,9 @@ public class ClickControl extends PamControlledUnit implements PamSettings {
|
||||
roccaControl = (RoccaControl) PamController.getInstance().findControlledUnit(RoccaControl.unitType);
|
||||
|
||||
}
|
||||
else {
|
||||
ClicksOffline.getOfflineTaskGroup(this);
|
||||
}
|
||||
|
||||
if (PamGUIManager.isSwing()) {
|
||||
|
||||
@ -988,6 +1005,19 @@ public class ClickControl extends PamControlledUnit implements PamSettings {
|
||||
return clicksOffline;
|
||||
}
|
||||
|
||||
// /**
|
||||
// * @return the number of offlineTaskGroups
|
||||
// */
|
||||
// public int getNumOfflineTaskGroups() {
|
||||
// return 1;
|
||||
// }
|
||||
//
|
||||
// /**
|
||||
// * @return the iTH offlineTaskGroup
|
||||
// */
|
||||
// public OfflineTaskGroup getOfflineTaskGroup(int i) {
|
||||
// return offlineTaskGroups.get(i);
|
||||
// }
|
||||
|
||||
/**
|
||||
* @return the latestOfflineEvent
|
||||
@ -1187,7 +1217,8 @@ public class ClickControl extends PamControlledUnit implements PamSettings {
|
||||
* @return
|
||||
*/
|
||||
public PamRawDataBlock findRawDataBlock() {
|
||||
return (PamController.getInstance().getRawDataBlock(clickParameters.getRawDataSource()));
|
||||
return getPamConfiguration().getRawDataBlock(clickParameters.getRawDataSource());
|
||||
// return (PamController.getInstance().getRawDataBlock(clickParameters.getRawDataSource()));
|
||||
}
|
||||
|
||||
|
||||
|
||||
@ -403,7 +403,7 @@ public class ClickDetector extends PamProcess {
|
||||
// try to connect automatically to the acquisition module ...
|
||||
// ArrayList<PamDataBlock> rawBlocks =
|
||||
// PamController.getInstance().getDataBlocks(RawDataUnit.class, false);
|
||||
AcquisitionControl daq = (AcquisitionControl) PamController.getInstance()
|
||||
AcquisitionControl daq = (AcquisitionControl) clickControl.getPamConfiguration()
|
||||
.findControlledUnit(AcquisitionControl.unitType);
|
||||
if (daq != null) {
|
||||
rawDataSource = daq.getRawDataBlock();
|
||||
|
||||
@ -841,7 +841,7 @@ public class ClickSpectrum extends ClickDisplay implements PamObserver , PamSett
|
||||
pt.x += 10;
|
||||
pt.y += 20;
|
||||
ClickSpectrumParams newParams = ClickSpectrumDialog.showDialog(
|
||||
clickControl.getPamView().getGuiFrame(), pt, this, clickSpectrumParams);
|
||||
clickControl.getGuiFrame(), pt, this, clickSpectrumParams);
|
||||
if (newParams != null) {
|
||||
if (newParams.plotCepstrum) {
|
||||
newParams.logScale = false;
|
||||
@ -859,7 +859,7 @@ public class ClickSpectrum extends ClickDisplay implements PamObserver , PamSett
|
||||
pt.x += 10;
|
||||
pt.y += 20;
|
||||
ClickSpectrumTemplateParams newTempParams = ClickSpectrumTemplateEditDialog.showDialog(
|
||||
clickControl.getPamView().getGuiFrame(), pt, this, clickTemplateParams,clickControl);
|
||||
clickControl.getGuiFrame(), pt, this, clickTemplateParams,clickControl);
|
||||
if (newTempParams!=null){
|
||||
clickTemplateParams = newTempParams.clone();
|
||||
sortWestAxis();
|
||||
@ -873,7 +873,7 @@ public class ClickSpectrum extends ClickDisplay implements PamObserver , PamSett
|
||||
pt.x += 10;
|
||||
pt.y += 20;
|
||||
ClickSpectrumTemplateParams newTempParams = ClickSpectrumTemplateDialog.showDialog(
|
||||
clickControl.getPamView().getGuiFrame(), pt, this, clickTemplateParams);
|
||||
clickControl.getGuiFrame(), pt, this, clickTemplateParams);
|
||||
if (newTempParams!=null){
|
||||
clickTemplateParams = newTempParams.clone();
|
||||
sortWestAxis();
|
||||
|
||||
@ -765,7 +765,7 @@ public class ClickWaveform extends ClickDisplay implements PamObserver {
|
||||
@Override
|
||||
public void actionPerformed(ActionEvent arg0) {
|
||||
|
||||
ClickParameters newParams = WaveDisplayDialog.showDialog(clickControl.getPamView().getGuiFrame(),
|
||||
ClickParameters newParams = WaveDisplayDialog.showDialog(clickControl.getGuiFrame(),
|
||||
clickWaveform, clickControl.clickParameters);
|
||||
if (newParams != null) {
|
||||
clickControl.clickParameters = newParams.clone();
|
||||
|
||||
@ -975,7 +975,7 @@ public class IDI_Display extends ClickDisplay implements PamObserver, PamSetting
|
||||
pt.y -= 10;
|
||||
pt.x += 10;
|
||||
IDI_DisplayParams newParams = IDI_DisplayDialog.showDialog(
|
||||
clickControl.getPamView().getGuiFrame(), pt, idiParams);
|
||||
clickControl.getGuiFrame(), pt, idiParams);
|
||||
if (newParams != null) {
|
||||
idiParams = newParams.clone();
|
||||
setParameters();
|
||||
|
||||
@ -248,7 +248,7 @@ public class WignerPlot extends ClickDisplay implements PamSettings {
|
||||
pt.y -= 10;
|
||||
pt.x += 10;
|
||||
WignerPlotOptions newoptions = WignerPlotdialog.showDialog(
|
||||
clickControl.getPamView().getGuiFrame(), pt, wignerPlotOptions);
|
||||
clickControl.getGuiFrame(), pt, wignerPlotOptions);
|
||||
if (newoptions != null) {
|
||||
wignerPlotOptions = newoptions.clone();
|
||||
clickedOnClick(lastClick);
|
||||
|
||||
@ -123,7 +123,7 @@ public class ClickDelayTask extends OfflineTask<ClickDetection> {
|
||||
// clickControl.getClickParameters().setDelayMeasurementParams(0, newParams.clone());
|
||||
// return true;
|
||||
// }
|
||||
ClickParameters newParams = ClickDelayDialog.showDialog(clickControl.getPamView().getGuiFrame(), clickControl);
|
||||
ClickParameters newParams = ClickDelayDialog.showDialog(clickControl.getGuiFrame(), clickControl);
|
||||
if (newParams != null) {
|
||||
clickControl.setClickParameters(newParams);
|
||||
return true;
|
||||
|
||||
@ -75,7 +75,7 @@ public class ClickReClassifyTask extends OfflineTask<ClickDetection> {
|
||||
|
||||
@Override
|
||||
public boolean callSettings() {
|
||||
return clickControl.classificationDialog(clickControl.getPamView().getGuiFrame());
|
||||
return clickControl.classificationDialog(clickControl.getGuiFrame());
|
||||
}
|
||||
|
||||
|
||||
|
||||
@ -61,8 +61,6 @@ public class ClicksOffline {
|
||||
private OfflineParameters offlineParameters = new OfflineParameters();
|
||||
|
||||
private OLProcessDialog clickOfflineDialog;
|
||||
|
||||
private OfflineTaskGroup offlineTaskGroup;
|
||||
|
||||
public static final String ClickTypeLookupName = "OfflineRCEvents";
|
||||
|
||||
@ -545,8 +543,8 @@ public class ClicksOffline {
|
||||
*/
|
||||
public void reAnalyseClicks() {
|
||||
if (clickOfflineDialog == null) {
|
||||
clickOfflineDialog = new OLProcessDialog(clickControl.getPamView().getGuiFrame(),
|
||||
getOfflineTaskGroup(), "Click Reprocessing");
|
||||
clickOfflineDialog = new OLProcessDialog(clickControl.getGuiFrame(),
|
||||
getOfflineTaskGroup(clickControl), "Click Reprocessing");
|
||||
}
|
||||
clickOfflineDialog.setVisible(true);
|
||||
}
|
||||
@ -576,8 +574,9 @@ public class ClicksOffline {
|
||||
* Get / Create an offline task group for click re-processing.
|
||||
* @return offline task group. Create if necessary
|
||||
*/
|
||||
private OfflineTaskGroup getOfflineTaskGroup() {
|
||||
offlineTaskGroup = new OfflineTaskGroup(clickControl, "Click Reprocessing");
|
||||
public static OfflineTaskGroup getOfflineTaskGroup(ClickControl clickControl) {
|
||||
|
||||
OfflineTaskGroup offlineTaskGroup = new OfflineTaskGroup(clickControl, "Click Reprocessing");
|
||||
|
||||
/**
|
||||
* These tasks are not registered - gets too complicated since some of them
|
||||
@ -607,7 +606,7 @@ public class ClicksOffline {
|
||||
}
|
||||
|
||||
public void labelClicks(OverlayMark overlayMark, List<PamDataUnit> dataList) {
|
||||
Window win = clickControl.getPamView().getGuiFrame();
|
||||
Window win = clickControl.getGuiFrame();
|
||||
OfflineEventDataUnit event = LabelClicksDialog.showDialog(win, clickControl, overlayMark, dataList);
|
||||
if (event != null) {
|
||||
notifyEventChanges(event);
|
||||
@ -625,7 +624,7 @@ public class ClicksOffline {
|
||||
}
|
||||
|
||||
public void newEvent(OverlayMark overlayMark, List<PamDataUnit> markedClicks) {
|
||||
Window win = clickControl.getPamView().getGuiFrame();
|
||||
Window win = clickControl.getGuiFrame();
|
||||
OfflineEventDataBlock offlineEventDataBlock = clickControl.getClickDetector().getOfflineEventDataBlock();
|
||||
if (markedClicks == null) {
|
||||
return;
|
||||
@ -692,7 +691,7 @@ public class ClicksOffline {
|
||||
}
|
||||
|
||||
public void labelClick(OverlayMark overlayMark, PamDataUnit singleClick) {
|
||||
Window win = clickControl.getPamView().getGuiFrame();
|
||||
Window win = clickControl.getGuiFrame();
|
||||
OfflineEventDataUnit event = LabelClicksDialog.showDialog(win, clickControl, overlayMark, singleClick);
|
||||
if (event != null) {
|
||||
notifyEventChanges(event);
|
||||
|
||||
@ -90,7 +90,7 @@ public class EchoDetectionTask extends OfflineTask<ClickDetection> {
|
||||
if (echoDetectionSystem == null) {
|
||||
return false;
|
||||
}
|
||||
return EchoDialog.showDialog(clickControl.getPamView().getGuiFrame(), echoDetectionSystem);
|
||||
return EchoDialog.showDialog(clickControl.getGuiFrame(), echoDetectionSystem);
|
||||
}
|
||||
|
||||
/* (non-Javadoc)
|
||||
|
||||
@ -84,7 +84,7 @@ public class ClickTrainOfflineProcess {
|
||||
|
||||
//if null open the dialog- also create a new offlineTask group if the datablock has changed.
|
||||
if (clickTrainDialog == null) {
|
||||
clickTrainDialog = new CTProcessDialog(this.clickTrainControl.getPamView().getGuiFrame(),
|
||||
clickTrainDialog = new CTProcessDialog(this.clickTrainControl.getGuiFrame(),
|
||||
clickTrainOfflineGroup, "Click Train Detection");
|
||||
//batchLocaliseDialog.setModalityType(Dialog.ModalityType.MODELESS);
|
||||
}
|
||||
|
||||
@ -122,7 +122,7 @@ public class DbHtControl extends PamControlledUnit implements PamSettings {
|
||||
offlineTaskGroup.addTask(task);
|
||||
}
|
||||
if (olProcessDialog == null) {
|
||||
olProcessDialog = new OLProcessDialog(getPamView().getGuiFrame(), offlineTaskGroup, "dBHt Data Export");
|
||||
olProcessDialog = new OLProcessDialog(getGuiFrame(), offlineTaskGroup, "dBHt Data Export");
|
||||
}
|
||||
olProcessDialog.setVisible(true);
|
||||
}
|
||||
|
||||
@ -455,7 +455,7 @@ public class DifarControl extends PamControlledUnit implements PamSettings {
|
||||
// offlineTaskGroup.addTask(task);
|
||||
}
|
||||
OLProcessDialog olProcessDialog;
|
||||
olProcessDialog = new OLProcessDialog(getPamView().getGuiFrame(), offlineTaskGroup, "DIFAR Data Export");
|
||||
olProcessDialog = new OLProcessDialog(getGuiFrame(), offlineTaskGroup, "DIFAR Data Export");
|
||||
olProcessDialog.setVisible(true);
|
||||
}
|
||||
|
||||
|
||||
@ -37,6 +37,7 @@ import fftManager.layoutFX.FFTGuiFX;
|
||||
//import fftManager.layoutFX.FFTGuiFX;
|
||||
import fftManager.newSpectrogram.SpectrogramPlotProvider;
|
||||
import spectrogramNoiseReduction.SpectrogramNoiseProcess;
|
||||
import PamController.PamConfiguration;
|
||||
import PamController.PamControlledUnit;
|
||||
import PamController.PamControlledUnitGUI;
|
||||
import PamController.PamControlledUnitSettings;
|
||||
@ -70,7 +71,11 @@ public class PamFFTControl extends PamControlledUnit implements PamSettings {
|
||||
private PamControlledGUISwing fftGUISwing;
|
||||
|
||||
public PamFFTControl(String unitName) {
|
||||
super("FFT Engine", unitName);
|
||||
this(null, unitName);
|
||||
}
|
||||
|
||||
public PamFFTControl(PamConfiguration pamConfiguration, String unitName) {
|
||||
super(pamConfiguration, "FFT Engine", unitName);
|
||||
|
||||
PamRawDataBlock rawDataBlock = PamController.getInstance().
|
||||
getRawDataBlock(fftParameters.dataSource);
|
||||
|
||||
@ -144,10 +144,10 @@ public class PamFFTProcess extends PamProcess {
|
||||
* name has not been set, so if there isn't a name, use the number !
|
||||
*/
|
||||
if (fftParameters.dataSourceName != null) {
|
||||
rawDataBlock = (PamRawDataBlock) PamController.getInstance().getDataBlock(RawDataUnit.class, fftParameters.dataSourceName);
|
||||
rawDataBlock = (PamRawDataBlock) fftControl.getPamConfiguration().getDataBlock(RawDataUnit.class, fftParameters.dataSourceName);
|
||||
}
|
||||
else {
|
||||
rawDataBlock = PamController.getInstance().getRawDataBlock(fftParameters.dataSource);
|
||||
rawDataBlock = fftControl.getPamConfiguration().getRawDataBlock(fftParameters.dataSource);
|
||||
if (rawDataBlock != null) {
|
||||
fftParameters.dataSourceName = rawDataBlock.getDataName();
|
||||
}
|
||||
|
||||
@ -32,6 +32,7 @@ import offlineProcessing.OLProcessDialog;
|
||||
import offlineProcessing.OfflineTaskGroup;
|
||||
import warnings.PamWarning;
|
||||
import warnings.WarningSystem;
|
||||
import PamController.PamConfiguration;
|
||||
import PamController.PamControlledUnit;
|
||||
import PamController.PamControlledUnitGUI;
|
||||
import PamController.PamControlledUnitSettings;
|
||||
@ -109,8 +110,8 @@ PamSettingsSource {
|
||||
|
||||
private int lastErrorCount;
|
||||
|
||||
public DBControl(String unitName, int settingsStore, boolean openImmediately) {
|
||||
super(dbUnitType, unitName);
|
||||
public DBControl(PamConfiguration pamconfiguration, String unitName, int settingsStore, boolean openImmediately) {
|
||||
super(pamconfiguration, dbUnitType, unitName);
|
||||
THIS = this;
|
||||
|
||||
databaseWarning = new PamWarning(getUnitName(), "Database error", 2);
|
||||
@ -157,6 +158,9 @@ PamSettingsSource {
|
||||
|
||||
// selectDatabase(null);
|
||||
|
||||
if (isInMainConfiguration() == false) {
|
||||
openImmediately = false;
|
||||
}
|
||||
if (databaseSystem == null){
|
||||
selectSystem(dbParameters.getDatabaseSystem(), openImmediately);
|
||||
}
|
||||
@ -529,7 +533,7 @@ PamSettingsSource {
|
||||
// offlineTaskGroup.addTask(task);
|
||||
}
|
||||
if (olProcessDialog == null) {
|
||||
olProcessDialog = new OLProcessDialog(getPamView().getGuiFrame(), offlineTaskGroup,
|
||||
olProcessDialog = new OLProcessDialog(getGuiFrame(), offlineTaskGroup,
|
||||
dataBlock.getDataName() + " Export");
|
||||
}
|
||||
olProcessDialog.setVisible(true);
|
||||
|
||||
@ -18,7 +18,7 @@ public class DBControlSettings extends DBControl {
|
||||
|
||||
public DBControlSettings(String unitName) {
|
||||
|
||||
super(unitName, PamSettingManager.LIST_DATABASESTUFF, false);
|
||||
super(null, unitName, PamSettingManager.LIST_DATABASESTUFF, false);
|
||||
|
||||
// logSettings = new LogSettings(this);
|
||||
|
||||
|
||||
@ -20,6 +20,7 @@ import pamViewFX.pamTask.PamTaskUpdate;
|
||||
import PamController.AWTScheduler;
|
||||
import PamController.DataOutputStore;
|
||||
import PamController.OfflineDataStore;
|
||||
import PamController.PamConfiguration;
|
||||
import PamController.PamControlledUnit;
|
||||
import PamController.PamController;
|
||||
import PamController.PamControllerInterface;
|
||||
@ -51,7 +52,10 @@ public class DBControlUnit extends DBControl implements DataOutputStore {
|
||||
private BackupInformation backupInformation;
|
||||
|
||||
public DBControlUnit(String unitName) {
|
||||
super(unitName, whichStore(), true);
|
||||
this(null, unitName);
|
||||
}
|
||||
public DBControlUnit(PamConfiguration pamConfiguration, String unitName) {
|
||||
super(pamConfiguration, unitName, whichStore(), true);
|
||||
THIS = this;
|
||||
setFullTablesCheck(true);
|
||||
// int runMode = PamController.getInstance().getRunMode();
|
||||
|
||||
@ -1111,6 +1111,9 @@ public abstract class SQLLogging {
|
||||
* @return a result set
|
||||
*/
|
||||
protected ResultSet createViewResultSet(PamConnection con, PamViewParameters pamViewParameters) {
|
||||
if (con == null) {
|
||||
return null;
|
||||
}
|
||||
String viewerClause = getViewerLoadClause(con.getSqlTypes(), pamViewParameters);
|
||||
return createViewResultSet(con, viewerClause);
|
||||
}
|
||||
|
||||
@ -26,6 +26,10 @@ public class Group3DOfflineTask extends OfflineTask<PamDataUnit>{
|
||||
this.group3DControl = group3DControl;
|
||||
group3DProcess = group3DControl.getGroup3dProcess();
|
||||
addAffectedDataBlock(group3DProcess.getGroup3dDataBlock());
|
||||
PamDataBlock parentData = group3DProcess.getParentDataBlock();
|
||||
if (parentData != null) {
|
||||
this.addRequiredDataBlock(parentData);
|
||||
}
|
||||
}
|
||||
|
||||
@Override
|
||||
|
||||
@ -36,11 +36,11 @@ The Azigram plugin is version 0.0.1 and has been tested on Pamguard version 2.01
|
||||
|
||||
<p>The sample rate of the Azigram output can be chosen from the Output panel of the settings. The plugin uses frequency domain downsampling in order to acheive the selected sample rate. When selecting the output sample rate, the output FFT length and FFT hop will be altered in order to maintain the same time and frequency resolution as the upstream FFT module.</p>
|
||||
|
||||
<p><img src="AzigramSettings.png" /></p>
|
||||
<p><img src="./images/AzigramSettings.png" /></p>
|
||||
|
||||
<p>The Azigram can be viewed on a Spectrogram Display. The HSV colour model is recommended for viewing Azigrams. This colour model is circular so will better illustrate the circular nature of the angular data (e.g. sounds from 359 degrees will be similar in colour to sounds from 1 degree). The limits of the Amplitude Range on the "Scales" tab of the "Spectrogram Parameters" should be manually set to Min 0 and Max 360. While this tab suggests that the Min and Max are in dB, the Azigram module will treat these values as degrees if an Azigram is being displayed.</p>
|
||||
|
||||
<p><img src="AzigramDisplay.png" /></p>
|
||||
<p><img src="./images/AzigramDisplay.png" /></p>
|
||||
|
||||
<p> </p>
|
||||
|
||||
@ -48,7 +48,7 @@ The Azigram plugin is version 0.0.1 and has been tested on Pamguard version 2.01
|
||||
|
||||
<p>The screenshot below shows the DIFAR Azigram Module displaying the Azigram output (top graph) and regular spectrogram ouput (middle panel) of a synthetic test signal. The test signal is a simulated DIFAR source with 8 short FM downsweeps arriving from 0-315 degrees in 45 degree increments. The bottom panel shows the PAMGuard Data Model.</p>
|
||||
|
||||
<p><img src="AzigramExample.png" /></p>
|
||||
<p><img src="./images/AzigramExample.png" /></p>
|
||||
|
||||
<p> </p>
|
||||
|
||||
|
||||
@ -70,7 +70,7 @@ public class MTOfflineProcess {
|
||||
|
||||
//if null open the dialog- also create a new offlineTask group if the datablock has changed.
|
||||
if (mtOfflineDialog == null) {
|
||||
mtOfflineDialog = new OLProcessDialog(this.mtContorl.getPamView().getGuiFrame(),
|
||||
mtOfflineDialog = new OLProcessDialog(this.mtContorl.getGuiFrame(),
|
||||
mtOfflineGroup, "Match Template Classifier");
|
||||
//batchLocaliseDialog.setModalityType(Dialog.ModalityType.MODELESS);
|
||||
}
|
||||
|
||||
@ -62,7 +62,7 @@ public class NoiseBandProcess extends PamProcess {
|
||||
|
||||
public void setupProcess() {
|
||||
super.setupProcess();
|
||||
PamDataBlock sourceData = PamController.getInstance().getDataBlock(RawDataUnit.class, noiseBandControl.noiseBandSettings.rawDataSource);
|
||||
PamDataBlock sourceData = noiseBandControl.getPamConfiguration().getDataBlock(RawDataUnit.class, noiseBandControl.noiseBandSettings.rawDataSource);
|
||||
if (sourceData == null) {
|
||||
return;
|
||||
}
|
||||
|
||||
@ -129,7 +129,7 @@ public class NoiseProcess extends PamProcess {
|
||||
}
|
||||
|
||||
private void findDataSource() {
|
||||
PamDataBlock source = PamController.getInstance().getDataBlock(FFTDataUnit.class,
|
||||
PamDataBlock source = noiseControl.getPamConfiguration().getDataBlock(FFTDataUnit.class,
|
||||
noiseControl.noiseSettings.dataSource);
|
||||
daqProcess = null;
|
||||
|
||||
|
||||
@ -1189,7 +1189,7 @@ private void setAxisLabels() {
|
||||
if (mouseMenu == null) {
|
||||
mouseMenu = new JPopupMenu();
|
||||
JMenuItem menuItem = new JMenuItem("Display Options ...");
|
||||
menuItem.addActionListener(new DisplayOptions(pamControlledUnit.getPamView().getGuiFrame()));
|
||||
menuItem.addActionListener(new DisplayOptions(pamControlledUnit.getGuiFrame()));
|
||||
mouseMenu.add(menuItem);
|
||||
|
||||
}
|
||||
|
||||
@ -126,7 +126,7 @@ public class OneBandControl extends PamControlledUnit implements PamSettings {
|
||||
offlineTaskGroup.addTask(task);
|
||||
}
|
||||
if (olProcessDialog == null) {
|
||||
olProcessDialog = new OLProcessDialog(getPamView().getGuiFrame(), offlineTaskGroup, "Noise Data Export");
|
||||
olProcessDialog = new OLProcessDialog(getGuiFrame(), offlineTaskGroup, "Noise Data Export");
|
||||
}
|
||||
olProcessDialog.setVisible(true);
|
||||
}
|
||||
|
||||
@ -123,7 +123,7 @@ public class RadarDisplay extends UserFramePlots implements PamObserver, PamSett
|
||||
if (this.radarParameters == null) {
|
||||
this.radarParameters = new RadarParameters();
|
||||
RadarParameters newParams = RadarParametersDialog.showDialog(RadarDisplay.this,
|
||||
userDisplayControl.getPamView().getGuiFrame(), this.radarParameters, radarProjector);
|
||||
userDisplayControl.getGuiFrame(), this.radarParameters, radarProjector);
|
||||
if (newParams != null) {
|
||||
this.radarParameters = newParams.clone();
|
||||
}
|
||||
@ -697,7 +697,7 @@ public class RadarDisplay extends UserFramePlots implements PamObserver, PamSett
|
||||
public void actionPerformed(ActionEvent e) {
|
||||
|
||||
RadarParameters newParams = RadarParametersDialog.showDialog(RadarDisplay.this,
|
||||
userDisplayControl.getPamView().getGuiFrame(), radarParameters, radarProjector);
|
||||
userDisplayControl.getGuiFrame(), radarParameters, radarProjector);
|
||||
if (newParams != null) {
|
||||
radarParameters = newParams.clone();
|
||||
newSettings();
|
||||
|
||||
@ -56,7 +56,7 @@ public class DLOfflineProcess {
|
||||
|
||||
//if null open the dialog- also create a new offlineTask group if the datablock has changed.
|
||||
if (mtOfflineDialog == null) {
|
||||
mtOfflineDialog = new OLProcessDialog(this.dlControl.getPamView().getGuiFrame(),
|
||||
mtOfflineDialog = new OLProcessDialog(this.dlControl.getGuiFrame(),
|
||||
dlOfflineGroup, "Deep Learning Classifier");
|
||||
//batchLocaliseDialog.setModalityType(Dialog.ModalityType.MODELESS);
|
||||
}
|
||||
|
||||
@ -32,6 +32,7 @@ import java.io.IOException;
|
||||
import java.util.EnumMap;
|
||||
|
||||
import javax.swing.JFileChooser;
|
||||
import javax.swing.filechooser.FileNameExtensionFilter;
|
||||
|
||||
import PamUtils.PamCalendar;
|
||||
|
||||
@ -126,31 +127,34 @@ public class RoccaClassifyThis {
|
||||
/** the field in the RoccaContourStats object which contains all the stats measures */
|
||||
private EnumMap<RoccaContourStats.ParamIndx, Double> contourStats;
|
||||
|
||||
private String dirIn;
|
||||
|
||||
/** the input filename */
|
||||
private String csvIn;
|
||||
|
||||
/** the input file */
|
||||
private File statsFileIn;
|
||||
|
||||
/** the output filename */
|
||||
private String csvOut;
|
||||
|
||||
/** the output file */
|
||||
private File statsFileOut;
|
||||
|
||||
/** Constructor */
|
||||
/**
|
||||
* Constructor used when allowing user to select training dataset
|
||||
* */
|
||||
public RoccaClassifyThis(RoccaProcess roccaProcess) {
|
||||
|
||||
// initialize the BufferedReader
|
||||
BufferedReader inputFile = null;
|
||||
|
||||
File statsFileIn = getTheFile();
|
||||
if (statsFileIn!=null) {
|
||||
runTheClassifier(statsFileIn, roccaProcess);
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* Constructor when we pass in the training dataset
|
||||
*/
|
||||
public RoccaClassifyThis() {
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* Ask the user to select the file containing the testing dataset
|
||||
*
|
||||
* @return File the csv file containing the testing dataset
|
||||
*/
|
||||
public File getTheFile() {
|
||||
// set the directory
|
||||
// this.dirIn = new String("C:\\Users\\Mike\\Documents\\Work\\Java\\EclipseWorkspace\\testing\\RoccaClassifyThis_testing");
|
||||
// this.dirIn = new String("C:\\Users\\Mike\\Documents\\Work\\Tom\\Atlantic Classifier\\manual 2-stage data");
|
||||
// this.dirIn = new String("C:\\Users\\Mike\\Documents\\Work\\Tom\\Hawaii dataset problems");
|
||||
this.dirIn = new String("C:\\Users\\SCANS\\Documents\\Work\\Biowaves\\ONR classifier");
|
||||
// this.dirIn = new String("C:\\Users\\SCANS\\Documents\\Work\\Biowaves\\ONR classifier");
|
||||
|
||||
// Define the input and output filenames
|
||||
// Hard-coded for now. To Do: query the user for the filename
|
||||
@ -158,35 +162,54 @@ public class RoccaClassifyThis {
|
||||
// this.csvIn = new String("Manual_5sp_April 9 2013.csv");
|
||||
// this.csvIn = new String("CombinedContourStats-fixed.csv");
|
||||
// this.csvOut = new String("RoccaContourStatsReclassified.csv");
|
||||
this.csvIn = new String("Atl_TestDFNoTrain_Call_W_160831.csv");
|
||||
statsFileIn = new File(dirIn, csvIn);
|
||||
this.csvOut = new String("Atl_TestDFNoTrain_Call_W_160829-classified.csv");
|
||||
statsFileOut = new File(dirIn, csvOut);
|
||||
// this.csvIn = new String("Atl_TestDFNoTrain_Call_W_160831.csv");
|
||||
// statsFileIn = new File(dirIn, csvIn);
|
||||
// this.csvOut = new String("Atl_TestDFNoTrain_Call_W_160829-classified.csv");
|
||||
// statsFileOut = new File(dirIn, csvOut);
|
||||
|
||||
// let the user select the arff file
|
||||
JFileChooser fileChooser = new JFileChooser();
|
||||
fileChooser.setDialogTitle("Select spreadsheet to recalculate...");
|
||||
fileChooser.setFileHidingEnabled(true);
|
||||
fileChooser.setApproveButtonText("Select");
|
||||
fileChooser.setFileSelectionMode(JFileChooser.FILES_ONLY);
|
||||
FileNameExtensionFilter restrict = new FileNameExtensionFilter("Only .csv files", "csv");
|
||||
fileChooser.addChoosableFileFilter(restrict);
|
||||
|
||||
int state = fileChooser.showOpenDialog(null);
|
||||
File statsFileIn = null;
|
||||
if (state == JFileChooser.APPROVE_OPTION) {
|
||||
|
||||
// load the file
|
||||
statsFileIn = fileChooser.getSelectedFile();
|
||||
return statsFileIn;
|
||||
|
||||
} else {
|
||||
return null;
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* Run the classifier
|
||||
* @param statsFileIn the File containing the testing dataset
|
||||
* @param roccaProcess the RoccaProcess instance
|
||||
*/
|
||||
public void runTheClassifier(File statsFileIn, RoccaProcess roccaProcess) {
|
||||
|
||||
// JFileChooser fileChooser = new JFileChooser();
|
||||
// fileChooser.setDialogTitle("Select spreadsheet to recalculate...");
|
||||
// fileChooser.setFileHidingEnabled(true);
|
||||
// fileChooser.setApproveButtonText("Select");
|
||||
// fileChooser.setFileSelectionMode(JFileChooser.FILES_ONLY);
|
||||
//
|
||||
// int state = fileChooser.showOpenDialog(this.dirIn);
|
||||
// if (state == JFileChooser.APPROVE_OPTION) {
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
int index = statsFileIn.getAbsolutePath().lastIndexOf(".");
|
||||
String csvOut = statsFileIn.getAbsolutePath().substring(0,index) + "-classified.csv";
|
||||
File statsFileOut = new File(csvOut);
|
||||
|
||||
|
||||
// load the classifier
|
||||
System.out.println("Loading classifier...");
|
||||
roccaProcess.setClassifierLoaded
|
||||
(roccaProcess.roccaClassifier.setUpClassifier());
|
||||
|
||||
// initialize the BufferedReader
|
||||
BufferedReader inputFile = null;
|
||||
|
||||
// open the input file
|
||||
try {
|
||||
System.out.println("Opening input file "+statsFileIn);
|
||||
@ -263,12 +286,45 @@ public class RoccaClassifyThis {
|
||||
contourStats.put(RoccaContourStats.ParamIndx.FREQPOSSLOPEMEAN, Double.parseDouble(dataArray[34]));
|
||||
contourStats.put(RoccaContourStats.ParamIndx.FREQNEGSLOPEMEAN, Double.parseDouble(dataArray[35]));
|
||||
contourStats.put(RoccaContourStats.ParamIndx.FREQSLOPERATIO, Double.parseDouble(dataArray[36]));
|
||||
contourStats.put(RoccaContourStats.ParamIndx.FREQBEGSWEEP, Double.parseDouble(dataArray[37]));
|
||||
//contourStats.put(RoccaContourStats.ParamIndx.FREQBEGUP, Double.parseDouble(dataArray[38]));
|
||||
//contourStats.put(RoccaContourStats.ParamIndx.FREQBEGDWN, Double.parseDouble(dataArray[39]));
|
||||
contourStats.put(RoccaContourStats.ParamIndx.FREQENDSWEEP, Double.parseDouble(dataArray[40]));
|
||||
//contourStats.put(RoccaContourStats.ParamIndx.FREQENDUP, Double.parseDouble(dataArray[41]));
|
||||
//contourStats.put(RoccaContourStats.ParamIndx.FREQENDDWN, Double.parseDouble(dataArray[42]));
|
||||
|
||||
// Note that we have to modify the FREQBEGSWEEP value. Weka is trained with the FREQBEGSWEEP param
|
||||
// as -1=down, 0=flat and 1=up, and that would be how the test data comes through as well. HOWEVER,
|
||||
// Weka assumes that for nominal parameters, the value is the index location (0,1 or 2) and NOT the actual trained
|
||||
// value (-1,0 or 1). So if the whistle has a down sweep, Weka needs the FREQBEGSWEEP value to be 0 indicating the
|
||||
// first location in the array (which was 'down'). If it was up, the value would need to be 2 indicating the third
|
||||
// location in the array (which was 'up').
|
||||
// Ideally we would map the values in the test data to the positions in the training array, but as a quick and
|
||||
// dirty hack we'll simply add 1 to the value since the difference between the nominal values (-1,0,1) and the
|
||||
/// index positions (0,1,2) is an offset of 1
|
||||
// Note also that we don't have to do the same thing for FREQBEGUP and FREQBEGDWN since, by coincidence, the training
|
||||
// values of 0 and 1 happen to match the index locations of 0 and 1
|
||||
//contourStats.put(RoccaContourStats.ParamIndx.FREQBEGSWEEP, Double.parseDouble(dataArray[37]));
|
||||
double tempVal = Double.parseDouble(dataArray[37]);
|
||||
tempVal++;
|
||||
contourStats.put(RoccaContourStats.ParamIndx.FREQBEGSWEEP, tempVal);
|
||||
contourStats.put(RoccaContourStats.ParamIndx.FREQBEGUP, Double.parseDouble(dataArray[38]));
|
||||
contourStats.put(RoccaContourStats.ParamIndx.FREQBEGDWN, Double.parseDouble(dataArray[39]));
|
||||
|
||||
// Note that we have to modify the FREQENDSWEEP value. Weka is trained with the FREQENDSWEEP param
|
||||
// as -1=down, 0=flat and 1=up, and that would be how the test data comes through as well. HOWEVER,
|
||||
// Weka assumes that for nominal parameters, the value is the index location (0,1 or 2) and NOT the actual trained
|
||||
// value (-1,0 or 1). So if the whistle has a down sweep, Weka needs the FREQENDSWEEP value to be 0 indicating the
|
||||
// first location in the array (which was 'down'). If it was up, the value would need to be 2 indicating the third
|
||||
// location in the array (which was 'up').
|
||||
// Ideally we would map the values in the test data to the positions in the training array, but as a quick and
|
||||
// dirty hack we'll simply add 1 to the value since the difference between the nominal values (-1,0,1) and the
|
||||
/// index positions (0,1,2) is an offset of 1
|
||||
// Note also that we don't have to do the same thing for FREQENDUP and FREQENDDWN since, by coincidence, the training
|
||||
// values of 0 and 1 happen to match the index locations of 0 and 1
|
||||
//contourStats.put(RoccaContourStats.ParamIndx.FREQENDSWEEP, Double.parseDouble(dataArray[40]));
|
||||
tempVal = Double.parseDouble(dataArray[40]);
|
||||
tempVal++;
|
||||
contourStats.put(RoccaContourStats.ParamIndx.FREQENDSWEEP, tempVal);
|
||||
contourStats.put(RoccaContourStats.ParamIndx.FREQENDUP, Double.parseDouble(dataArray[41]));
|
||||
contourStats.put(RoccaContourStats.ParamIndx.FREQENDDWN, Double.parseDouble(dataArray[42]));
|
||||
// end of hack
|
||||
|
||||
|
||||
contourStats.put(RoccaContourStats.ParamIndx.NUMSWEEPSUPDWN, Double.parseDouble(dataArray[43]));
|
||||
contourStats.put(RoccaContourStats.ParamIndx.NUMSWEEPSDWNUP, Double.parseDouble(dataArray[44]));
|
||||
contourStats.put(RoccaContourStats.ParamIndx.NUMSWEEPSUPFLAT, Double.parseDouble(dataArray[45]));
|
||||
@ -285,8 +341,8 @@ public class RoccaClassifyThis {
|
||||
contourStats.put(RoccaContourStats.ParamIndx.INFLMEANDELTA, Double.parseDouble(dataArray[56]));
|
||||
contourStats.put(RoccaContourStats.ParamIndx.INFLSTDDEVDELTA, Double.parseDouble(dataArray[57]));
|
||||
contourStats.put(RoccaContourStats.ParamIndx.INFLMEDIANDELTA, Double.parseDouble(dataArray[58]));
|
||||
contourStats.put(RoccaContourStats.ParamIndx.INFLDUR, Double.parseDouble(dataArray[59]));
|
||||
contourStats.put(RoccaContourStats.ParamIndx.STEPDUR, Double.parseDouble(dataArray[60]));
|
||||
//contourStats.put(RoccaContourStats.ParamIndx.INFLDUR, Double.parseDouble(dataArray[59]));
|
||||
//contourStats.put(RoccaContourStats.ParamIndx.STEPDUR, Double.parseDouble(dataArray[60]));
|
||||
|
||||
// Run the classifier
|
||||
roccaProcess.roccaClassifier.classifyContour2(rcdb);
|
||||
|
||||
@ -169,6 +169,7 @@ public class RoccaParametersDialog extends PamDialog implements ActionListener,
|
||||
JButton classifier2Button;
|
||||
JButton recalcButton;
|
||||
JButton reclassifyButton;
|
||||
JButton trainThenTestButton;
|
||||
JButton clearClassifier;
|
||||
JComboBox<DefaultComboBoxModel<Vector<String>>> stage1Classes;
|
||||
DefaultComboBoxModel<Vector<String>> stage1ClassModel;
|
||||
@ -513,6 +514,10 @@ public class RoccaParametersDialog extends PamDialog implements ActionListener,
|
||||
reclassifyButton.addActionListener(this);
|
||||
reclassifyButton.setToolTipText("Load the whistle data from the contour stats output file, and run it through the current Classifier");
|
||||
reclassifyButton.setVisible(true);
|
||||
trainThenTestButton = new JButton("Train then Test");
|
||||
trainThenTestButton.addActionListener(this);
|
||||
trainThenTestButton.setToolTipText("Train a classifier on a set of training data, then test it with a set of testing data");
|
||||
trainThenTestButton.setVisible(true);
|
||||
|
||||
// ******** THIS LINES CONTROLS THE VISIBILITY ********
|
||||
if (RoccaDev.isEnabled()) {
|
||||
@ -528,13 +533,15 @@ public class RoccaParametersDialog extends PamDialog implements ActionListener,
|
||||
extraPanelLayout.createParallelGroup(GroupLayout.Alignment.LEADING)
|
||||
.addGroup(extraPanelLayout.createSequentialGroup()
|
||||
.addComponent(recalcButton)
|
||||
.addComponent(reclassifyButton))
|
||||
.addComponent(reclassifyButton)
|
||||
.addComponent(trainThenTestButton))
|
||||
);
|
||||
extraPanelLayout.setVerticalGroup(
|
||||
extraPanelLayout.createSequentialGroup()
|
||||
.addGroup(extraPanelLayout.createParallelGroup(GroupLayout.Alignment.BASELINE)
|
||||
.addComponent(recalcButton)
|
||||
.addComponent(reclassifyButton))
|
||||
.addComponent(reclassifyButton)
|
||||
.addComponent(trainThenTestButton))
|
||||
);
|
||||
classifierPanel.add(extraButtonsSubPanel);
|
||||
|
||||
@ -892,7 +899,9 @@ public class RoccaParametersDialog extends PamDialog implements ActionListener,
|
||||
} else if (e.getSource() == recalcButton) {
|
||||
RoccaFixParams recalc = new RoccaFixParams(roccaControl.roccaProcess);
|
||||
} else if (e.getSource() == reclassifyButton) {
|
||||
RoccaClassifyThisEvent reclassify = new RoccaClassifyThisEvent(roccaControl.roccaProcess);
|
||||
RoccaClassifyThis reclassify = new RoccaClassifyThis(roccaControl.roccaProcess);
|
||||
} else if (e.getSource() == trainThenTestButton) {
|
||||
RoccaTrainThenTest trainThenTest = new RoccaTrainThenTest(roccaControl.roccaProcess);
|
||||
} else if (e.getSource() == fftButton) {
|
||||
roccaParameters.setUseFFT(true);
|
||||
this.enableTheCorrectSource();
|
||||
|
||||
@ -145,6 +145,7 @@ public class RoccaRFModel implements java.io.Serializable {
|
||||
|
||||
} catch (Exception ex) {
|
||||
System.err.println("1st Classification failed: " + ex.getMessage());
|
||||
ex.printStackTrace();
|
||||
rcdb.setClassifiedAs("Err");
|
||||
}
|
||||
}
|
||||
|
||||
@ -24,10 +24,14 @@
|
||||
package rocca;
|
||||
|
||||
import java.io.BufferedReader;
|
||||
import java.io.File;
|
||||
import java.io.FileReader;
|
||||
import java.util.Date;
|
||||
import java.util.Enumeration;
|
||||
|
||||
import javax.swing.JFileChooser;
|
||||
import javax.swing.filechooser.FileNameExtensionFilter;
|
||||
|
||||
import weka.classifiers.trees.RandomForest;
|
||||
import weka.core.Instances;
|
||||
import weka.core.SerializationHelper;
|
||||
@ -42,13 +46,64 @@ import weka.core.SerializationHelper;
|
||||
*/
|
||||
public class RoccaTrainClassifier {
|
||||
|
||||
|
||||
/**
|
||||
* Standalone implementation
|
||||
*
|
||||
* @param args
|
||||
*/
|
||||
public static void main(String[] args) {
|
||||
|
||||
RoccaTrainClassifier rtc = new RoccaTrainClassifier();
|
||||
File arffFile = rtc.getArff();
|
||||
if (arffFile!=null) {
|
||||
String modelName = rtc.trainClassifier(arffFile);
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* Let user choose arff file training dataset
|
||||
*
|
||||
* @return File the arff file containing the training dataset
|
||||
*/
|
||||
public File getArff() {
|
||||
// String arffFile = "C:\\Users\\SCANS\\Documents\\Work\\Biowaves\\ONR classifier\\TP_TrainEvtDF_170408";
|
||||
|
||||
// let the user select the arff file
|
||||
JFileChooser fileChooser = new JFileChooser();
|
||||
fileChooser.setDialogTitle("Select arff file containing training data");
|
||||
fileChooser.setFileHidingEnabled(true);
|
||||
fileChooser.setApproveButtonText("Select");
|
||||
fileChooser.setFileSelectionMode(JFileChooser.FILES_ONLY);
|
||||
FileNameExtensionFilter restrict = new FileNameExtensionFilter("Only .arff files", "arff");
|
||||
fileChooser.addChoosableFileFilter(restrict);
|
||||
File arffFile;
|
||||
|
||||
int state = fileChooser.showOpenDialog(null);
|
||||
if (state == JFileChooser.APPROVE_OPTION) {
|
||||
|
||||
// load the file
|
||||
arffFile = fileChooser.getSelectedFile();
|
||||
return arffFile;
|
||||
|
||||
} else {
|
||||
return null;
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* Actual code to train the classifier
|
||||
*
|
||||
*/
|
||||
public String trainClassifier(File arffFile) {
|
||||
|
||||
RandomForest model = new RandomForest ();
|
||||
Instances trainData = null;
|
||||
String arffFile = "C:\\Users\\SCANS\\Documents\\Work\\Biowaves\\ONR classifier\\TP_TrainEvtDF_170408";
|
||||
|
||||
// load the ARFF file containing the training set
|
||||
System.out.println("Loading data...");
|
||||
System.out.println("Loading data..." + arffFile.getAbsolutePath());
|
||||
try {
|
||||
trainData = new Instances
|
||||
(new BufferedReader
|
||||
@ -56,10 +111,13 @@ public class RoccaTrainClassifier {
|
||||
// ("C:\\Users\\Mike\\Documents\\Work\\Java\\WEKA\\allwhists 12 vars 8sp update 1-28-10.arff")));
|
||||
// ("C:\\Users\\Mike\\Documents\\Work\\Java\\WEKA\\weka vs R\\ETP_orcawale_whists2 modified-subset110perspecies-no_harm_ratios.arff")));
|
||||
// ("C:\\Users\\SCANS\\Documents\\Work\\Biowaves\\ONR classifier\\Atl_TrainDF_Event_160829.arff")));
|
||||
(arffFile + ".arff")));
|
||||
// (arffFile + ".arff")));
|
||||
(arffFile)));
|
||||
trainData.setClassIndex(trainData.numAttributes()-1);
|
||||
} catch (Exception ex) {
|
||||
System.out.println("Error Loading...");
|
||||
ex.printStackTrace();
|
||||
return null;
|
||||
}
|
||||
|
||||
// set the classifier parameters
|
||||
@ -78,6 +136,8 @@ public class RoccaTrainClassifier {
|
||||
model.setOptions(options);
|
||||
} catch (Exception ex) {
|
||||
System.out.println("Error setting options...");
|
||||
ex.printStackTrace();
|
||||
return null;
|
||||
}
|
||||
|
||||
// train the classifier
|
||||
@ -90,23 +150,29 @@ public class RoccaTrainClassifier {
|
||||
new Date());
|
||||
} catch (Exception ex) {
|
||||
System.out.println("Error training classifier...");
|
||||
ex.printStackTrace();
|
||||
return null;
|
||||
}
|
||||
|
||||
// save the classifier
|
||||
String[] curOptions = model.getOptions();
|
||||
Enumeration test = model.listOptions();
|
||||
System.out.println("Saving Classifier...");
|
||||
// String[] curOptions = model.getOptions();
|
||||
// Enumeration test = model.listOptions();
|
||||
Instances header = new Instances(trainData,0);
|
||||
int index = arffFile.getAbsolutePath().lastIndexOf(".");
|
||||
String modelName = arffFile.getAbsolutePath().substring(0,index) + ".model";
|
||||
System.out.println("Saving Classifier..." + modelName);
|
||||
try {
|
||||
SerializationHelper.writeAll
|
||||
// ("C:\\Users\\Mike\\Documents\\Work\\Java\\WEKA\\weka vs R\\RF_8sp_54att_110whistle-subset.model",
|
||||
(arffFile + ".model",
|
||||
// (arffFile + ".model",
|
||||
(modelName,
|
||||
new Object[]{model,header});
|
||||
System.out.println("Finished!");
|
||||
return modelName;
|
||||
} catch (Exception ex) {
|
||||
System.out.println("Error saving classifier...");
|
||||
ex.printStackTrace();
|
||||
}
|
||||
|
||||
System.out.println("Finished!");
|
||||
return null;
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
109
src/rocca/RoccaTrainThenTest.java
Normal file
109
src/rocca/RoccaTrainThenTest.java
Normal file
@ -0,0 +1,109 @@
|
||||
/*
|
||||
* PAMGUARD - Passive Acoustic Monitoring GUARDianship.
|
||||
* To assist in the Detection Classification and Localisation
|
||||
* of marine mammals (cetaceans).
|
||||
*
|
||||
* Copyright (C) 2006
|
||||
*
|
||||
* This program is free software; you can redistribute it and/or
|
||||
* modify it under the terms of the GNU General Public License
|
||||
* as published by the Free Software Foundation; either version 3
|
||||
* of the License, or (at your option) any later version.
|
||||
*
|
||||
* This program is distributed in the hope that it will be useful,
|
||||
* but WITHOUT ANY WARRANTY; without even the implied warranty of
|
||||
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
||||
* GNU General Public License for more details.
|
||||
*
|
||||
* You should have received a copy of the GNU General Public License
|
||||
* along with this program; if not, write to the Free Software
|
||||
* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
|
||||
*/
|
||||
|
||||
package rocca;
|
||||
|
||||
import java.io.BufferedReader;
|
||||
import java.io.File;
|
||||
import java.io.FileNotFoundException;
|
||||
import java.io.FileReader;
|
||||
import java.io.IOException;
|
||||
|
||||
import javax.swing.JFileChooser;
|
||||
import javax.swing.filechooser.FileNameExtensionFilter;
|
||||
|
||||
public class RoccaTrainThenTest {
|
||||
|
||||
RoccaTrainClassifier roccaTrainClassifier;
|
||||
|
||||
RoccaClassifyThis roccaClassifyThis;
|
||||
|
||||
|
||||
/**
|
||||
* Main Constructor
|
||||
* @param roccaProcess
|
||||
*/
|
||||
public RoccaTrainThenTest(RoccaProcess roccaProcess) {
|
||||
|
||||
|
||||
// let the user select the csv file containing the training and testing dataset(s)
|
||||
JFileChooser fileChooser = new JFileChooser();
|
||||
fileChooser.setDialogTitle("Select csv file with the training/testing pairs");
|
||||
fileChooser.setFileHidingEnabled(true);
|
||||
fileChooser.setApproveButtonText("Select");
|
||||
fileChooser.setFileSelectionMode(JFileChooser.FILES_ONLY);
|
||||
FileNameExtensionFilter restrict = new FileNameExtensionFilter("Only .csv files", "csv");
|
||||
fileChooser.addChoosableFileFilter(restrict);
|
||||
|
||||
int state = fileChooser.showOpenDialog(null);
|
||||
if (state == JFileChooser.APPROVE_OPTION) {
|
||||
|
||||
// load the file
|
||||
try {
|
||||
File csvDataPairs = fileChooser.getSelectedFile();
|
||||
BufferedReader br = new BufferedReader(new FileReader(csvDataPairs));
|
||||
String curPath = csvDataPairs.getParent();
|
||||
|
||||
// main loop
|
||||
// read through the csv file one line at a time. The first column should contain the training dataset filename,
|
||||
// and the second column the testing dataset filename. Paths should be relative to the path containing
|
||||
// the csv file
|
||||
String line = "";
|
||||
String splitBy = ",";
|
||||
while ((line=br.readLine())!=null) {
|
||||
|
||||
String[] filenames = line.split(splitBy);
|
||||
|
||||
// train the classifier
|
||||
File arffFile = new File(curPath + File.separator + filenames[0]);
|
||||
roccaTrainClassifier = new RoccaTrainClassifier();
|
||||
String modelName = roccaTrainClassifier.trainClassifier(arffFile);
|
||||
if (modelName == null) {
|
||||
System.out.println("ERROR: could not create classifier model from "+arffFile);
|
||||
continue;
|
||||
}
|
||||
|
||||
// set the classifier as the current one in RoccaParameters
|
||||
roccaProcess.roccaControl.roccaParameters.setRoccaClassifierModelFilename(new File(modelName));
|
||||
|
||||
|
||||
// test the classifier with the testing dataset
|
||||
File testFile = new File(curPath + File.separator + filenames[1]);
|
||||
roccaClassifyThis = new RoccaClassifyThis();
|
||||
roccaClassifyThis.runTheClassifier(testFile, roccaProcess);
|
||||
|
||||
}
|
||||
|
||||
|
||||
} catch (FileNotFoundException e) {
|
||||
e.printStackTrace();
|
||||
return;
|
||||
} catch (IOException e) {
|
||||
e.printStackTrace();
|
||||
return;
|
||||
}
|
||||
} else {
|
||||
return;
|
||||
}
|
||||
}
|
||||
|
||||
}
|
||||
@ -6,6 +6,7 @@ import java.awt.event.ActionListener;
|
||||
import java.io.Serializable;
|
||||
import javax.swing.JMenuItem;
|
||||
|
||||
import PamController.PamConfiguration;
|
||||
import PamController.PamControlledUnit;
|
||||
import PamController.PamControlledUnitSettings;
|
||||
import PamController.PamControllerInterface;
|
||||
@ -22,7 +23,10 @@ public class SpectrogramNoiseControl extends PamControlledUnit implements PamSet
|
||||
protected SpectrogramNoiseProcess spectrogramNoiseProcess;
|
||||
|
||||
public SpectrogramNoiseControl(String unitName) {
|
||||
super("Spectrogram Noise Reduction", unitName);
|
||||
this(null, unitName);
|
||||
}
|
||||
public SpectrogramNoiseControl(PamConfiguration pamConfiguration, String unitName) {
|
||||
super(pamConfiguration, "Spectrogram Noise Reduction", unitName);
|
||||
|
||||
spectrogramNoiseProcess = new SpectrogramNoiseProcess(this);
|
||||
addPamProcess(spectrogramNoiseProcess);
|
||||
|
||||
@ -15,6 +15,7 @@ import spectrogramNoiseReduction.threshold.ThresholdParams;
|
||||
|
||||
import fftManager.FFTDataBlock;
|
||||
import fftManager.FFTDataUnit;
|
||||
import PamController.PamConfiguration;
|
||||
import PamController.PamControlledUnit;
|
||||
import PamController.PamController;
|
||||
import PamUtils.complex.ComplexArray;
|
||||
@ -64,7 +65,11 @@ public class SpectrogramNoiseProcess extends PamProcess {
|
||||
@Override
|
||||
public void setupProcess() {
|
||||
super.setupProcess();
|
||||
sourceData = (FFTDataBlock) PamController.getInstance().getDataBlock(FFTDataUnit.class,
|
||||
|
||||
PamConfiguration mainConfig = PamController.getInstance().getPamConfiguration();
|
||||
PamConfiguration localConfig = getPamControlledUnit().getPamConfiguration();
|
||||
|
||||
sourceData = (FFTDataBlock) getPamControlledUnit().getPamConfiguration().getDataBlock(FFTDataUnit.class,
|
||||
getNoiseSettings().dataSource);
|
||||
setParentDataBlock(sourceData);
|
||||
|
||||
|
||||
@ -64,7 +64,7 @@ public class TargetMotionLocaliser<T extends PamDataUnit> extends AbstractLocali
|
||||
|
||||
// public boolean showTMDialog(T dataUnit) {
|
||||
// if (targetMotionMainPanel == null) {
|
||||
////targetMotionDialog = new TargetMotionMainPanel<T>(pamControlledUnit.getPamView().getGuiFrame(), this);
|
||||
////targetMotionDialog = new TargetMotionMainPanel<T>(pamControlledUnit.getGuiFrame(), this);
|
||||
// }
|
||||
// targetMotionMainPanel.updateCurrentControlPanel();
|
||||
// return true;
|
||||
|
||||
@ -54,7 +54,7 @@ public class TMOfflineFunctions {
|
||||
//when we change datablock the taks group is going to stay the same- need to make sure it changes
|
||||
|
||||
if (batchLocaliseDialog == null || currentDataBlock!=targetMotionControl.getCurrentDataBlock()) {
|
||||
batchLocaliseDialog = new TMOLProcessDialog(targetMotionControl.getPamView().getGuiFrame(),
|
||||
batchLocaliseDialog = new TMOLProcessDialog(targetMotionControl.getGuiFrame(),
|
||||
getOfflineTaskGroup(), "Batch Localise");
|
||||
//batchLocaliseDialog.setModalityType(Dialog.ModalityType.MODELESS);
|
||||
}
|
||||
|
||||
@ -153,7 +153,7 @@ public class TargetMotionLocaliser<T extends GroupDetection> extends AbstractLoc
|
||||
|
||||
public boolean showTMDialog(T dataUnit) {
|
||||
if (targetMotionDialog == null) {
|
||||
targetMotionDialog = new TargetMotionDialog<T>(pamControlledUnit.getPamView().getGuiFrame(), this);
|
||||
targetMotionDialog = new TargetMotionDialog<T>(pamControlledUnit.getGuiFrame(), this);
|
||||
}
|
||||
targetMotionDialog.updateEventList();
|
||||
targetMotionDialog.setDataUnit(dataUnit);
|
||||
|
||||
@ -1,6 +1,7 @@
|
||||
package videoRangePanel;
|
||||
|
||||
import java.util.List;
|
||||
import java.awt.Frame;
|
||||
import java.awt.Point;
|
||||
import java.io.File;
|
||||
import java.io.Serializable;
|
||||
@ -361,9 +362,9 @@ public class VRControl extends PamControlledUnit implements PamSettings {
|
||||
* @param frame
|
||||
* @param tab- the tab to open the settings dialog on.
|
||||
*/
|
||||
public void settingsButtonAWT(JFrame frame, int tab) {
|
||||
public void settingsButtonAWT(Frame frame, int tab) {
|
||||
if (frame == null) {
|
||||
frame = getPamView().getGuiFrame();
|
||||
frame = getGuiFrame();
|
||||
}
|
||||
VRParameters newParams = VRParametersDialog.showDialog(frame, this, tab);
|
||||
if (newParams != null) {
|
||||
|
||||
@ -105,7 +105,7 @@ public class TideManager extends DataImport<String> {
|
||||
// }
|
||||
// else dir=null;
|
||||
//
|
||||
// String newFile=PamFileBrowser.fileBrowser(vrControl.getPamView().getGuiFrame(),dir,PamFileBrowser.OPEN_FILE,"txt");
|
||||
// String newFile=PamFileBrowser.fileBrowser(vrControl.getGuiFrame(),dir,PamFileBrowser.OPEN_FILE,"txt");
|
||||
//
|
||||
// return newFile;
|
||||
// }
|
||||
|
||||
@ -179,7 +179,7 @@ public class VRSidePanel implements PamSidePanel {
|
||||
}
|
||||
|
||||
if (vrControl.getVRParams().currentImageFile==null) {
|
||||
PamDialog.showWarning(vrControl.getPamView().getGuiFrame(), "No image found", "The folder selected did not contain any compatible images");
|
||||
PamDialog.showWarning(vrControl.getGuiFrame(), "No image found", "The folder selected did not contain any compatible images");
|
||||
return;
|
||||
}
|
||||
vrControl.loadFile(vrControl.getVRParams().currentImageFile);
|
||||
|
||||
@ -221,7 +221,7 @@ public class VRDisplayFX extends PamBorderPane implements VRPane {
|
||||
}
|
||||
|
||||
if (vrControl.getVRParams().currentImageFile==null) {
|
||||
PamDialog.showWarning(vrControl.getPamView().getGuiFrame(), "No image found", "The folder selected did not contain any compatible images");
|
||||
PamDialog.showWarning(vrControl.getGuiFrame(), "No image found", "The folder selected did not contain any compatible images");
|
||||
return;
|
||||
}
|
||||
//go back up a few levels to load file as update flags etc need to be triggerred.
|
||||
|
||||
@ -19,6 +19,7 @@ import detectionPlotFX.whistleDDPlot.WhistleDDPlotProvider;
|
||||
import spectrogramNoiseReduction.SpectrogramNoiseProcess;
|
||||
import whistlesAndMoans.layoutFX.WhistleMoanGUIFX;
|
||||
import whistlesAndMoans.plots.WhistlePlotProvider;
|
||||
import PamController.PamConfiguration;
|
||||
import PamController.PamControlledUnit;
|
||||
import PamController.PamControlledUnitGUI;
|
||||
import PamController.PamControlledUnitSettings;
|
||||
@ -55,7 +56,10 @@ public class WhistleMoanControl extends PamControlledUnit implements PamSettings
|
||||
public static final String UNITTYPE = "WhistlesMoans";
|
||||
|
||||
public WhistleMoanControl(String unitName) {
|
||||
super(UNITTYPE, unitName);
|
||||
this(null, unitName);
|
||||
}
|
||||
public WhistleMoanControl(PamConfiguration pamConfiguration, String unitName) {
|
||||
super(pamConfiguration, UNITTYPE, unitName);
|
||||
|
||||
spectrogramNoiseProcess = new SpectrogramNoiseProcess(this);
|
||||
addPamProcess(spectrogramNoiseProcess);
|
||||
|
||||
@ -201,36 +201,20 @@ public class WhistleToneConnectProcess extends PamProcess {
|
||||
@Override
|
||||
public void setupProcess() {
|
||||
super.setupProcess();
|
||||
|
||||
SpectrogramNoiseProcess snp = whistleMoanControl.getSpectrogramNoiseProcess();
|
||||
setParentDataBlock(snp.getOutputDataBlock());
|
||||
if (whistleMoanControl.whistleToneParameters.getDataSource() == null) {
|
||||
return;
|
||||
}
|
||||
// sourceData = (FFTDataBlock) PamController.getInstance().getDataBlock(FFTDataUnit.class,
|
||||
// whistleMoanControl.whistleToneParameters.getDataSource());
|
||||
// snp.setParentDataBlock(sourceData);
|
||||
|
||||
sourceData = (FFTDataBlock) getParentDataBlock(); // our source should always be the output of the SpectrogramNoiseProcess
|
||||
SpectrogramNoiseSettings specnoiseSettings = whistleMoanControl.whistleToneParameters.getSpecNoiseSettings();
|
||||
specnoiseSettings.dataSource = whistleMoanControl.whistleToneParameters.getDataSource();
|
||||
snp.setNoiseSettings(specnoiseSettings);
|
||||
|
||||
chanOrSeqMap = whistleMoanControl.whistleToneParameters.getChanOrSeqBitmap(); // the channelMap in WhistleToneParameters object may be a sequence map or a channel map, depending on source
|
||||
// if (sourceData != null) {
|
||||
//// chanOrSeqMap = getParentDataBlock().getChannelMap() &
|
||||
// chanOrSeqMap = getParentDataBlock().getSequenceMap() & // use the sequence bitmap instead of the channel bitmap, in case this is beamformer output
|
||||
// whistleMoanControl.whistleToneParameters.getChanOrSeqBitmap();
|
||||
// outputData.sortOutputMaps(getParentDataBlock().getChannelMap(), getParentDataBlock().getSequenceMapObject(), chanOrSeqMap);
|
||||
// outputData.setFftHop(sourceData.getFftHop());
|
||||
// outputData.setFftLength(sourceData.getFftLength());
|
||||
//
|
||||
// // 2017/11/30 set the whistleLocations channelMap properly
|
||||
// whistleLocations.sortOutputMaps(getParentDataBlock().getChannelMap(), getParentDataBlock().getSequenceMapObject(), chanOrSeqMap);
|
||||
//
|
||||
// // smoothingChannelProcessList = new SmoothingChannelProcess[PamUtils.getHighestChannel(chanOrSeqMap)+1];
|
||||
// // for (int i = 0; i < PamUtils.getHighestChannel(chanOrSeqMap)+1; i++) {
|
||||
// // smoothingChannelProcessList[i] = new SmoothingChannelProcess();
|
||||
// // }
|
||||
// }
|
||||
|
||||
// set the localisation information in the two output datablocks. If the source is using sequence numbers, then we cannot localise
|
||||
boolean mayBearings = whistleMoanControl.whistleToneParameters.mayHaveBearings();
|
||||
boolean mayRange = whistleMoanControl.whistleToneParameters.mayHaveRange();
|
||||
|
||||
Loading…
Reference in New Issue
Block a user