Merge pull request #32 from PAMGuard/main

Readme for 2.02.06
2024-11-25 08:32:32 +00:00 · 2022-11-15 17:39:11 +00:00 · 2022-11-15 17:39:11 +00:00 · edfc5c9083
commit edfc5c9083
parent 484109703e 76e8467201
3 changed files with 170 additions and 166 deletions
--- a/README.html
+++ b/README.html
@ -388,7 +388,10 @@ PamguardBeta_ViewerMode.exe):</p>
 <h1><a name="_LATEST_VERSION_2.02.03"></a><em><span style='font-size:12.0pt;
 font-family:"Cambria",serif;font-style:normal'><a
-href="#_Latest_Version_2.02.05">LATEST VERSION 2.02.05 October 2022</a></span></em></h1>
+href="#_Latest_Version_2.02.06">LATEST VERSION 2.02.06 November 2022</a></span></em></h1>
 <h1><em><span style='font-size:12.0pt;font-family:"Cambria",serif;font-style:
 normal'><a href="#_Latest_Version_2.02.05">Version 2.02.05 October 2022</a></span></em></h1>
 <h1><em><span style='font-size:12.0pt;font-family:"Cambria",serif;font-style:
 normal'><a href="#_Latest_Version_2.02.03_2">Version 2.02.03 February 2022</a></span></em></h1>
@ -443,8 +446,9 @@ Version 2.00.10 June 2017</a></span></h1>
 <h1><span style='font-size:12.0pt'><a href="#_Older_Versions">Older Versions</a></span></h1>
-<h1><a name="_Latest_Version_2.02.03_1"></a><a name="_Latest_Version_2.02.05"></a><span
+<h1><a name="_Latest_Version_2.02.03_1"></a><a name="_Latest_Version_2.02.05"></a><a
-lang=EN-US>Latest Version 2.02.06 November 2022</span></h1>
+name="_Latest_Version_2.02.06"></a><span lang=EN-US>Latest Version 2.02.06
 November 2022</span></h1>
 <h2><span lang=EN-US>Bug Fix</span></h2>
@ -457,13 +461,14 @@ offline, for example running click classifiers. This is now fixed. </span></p>
 <h2><span lang=EN-US>New Features</span></h2>
 <p class=MsoNormal><span lang=EN-US>SoundTrap SUD file reading. If you’re using
-SoundTrap autonomous recorders from Ocean Instruments, you no longer need to decompress
+SoundTrap autonomous recorders from Ocean Instruments, you no longer need to
-the SoundTrap files prior to processing. This will save time and a lot of disk
+decompress the SoundTrap files prior to processing. This will save time and a
-space. Extraction of clicks from the inbuilt SoundTrap Click detector an also
+lot of disk space. Extraction of clicks from the inbuilt SoundTrap Click
-happen while processing SUD file data with other detectors, thereby
+detector an also happen while processing SUD file data with other detectors,
-streamlining the whole processing chain. Read the online Help for details.   </span></p>
+thereby streamlining the whole processing chain. Read the online Help for
 details. &nbsp;&nbsp;</span></p>
-<h1><span lang=EN-US>Latest Version 2.02.05 October 2022</span></h1>
+<h1><span lang=EN-US>Version 2.02.05 October 2022</span></h1>
 <h2><span lang=EN-US>Click Train Detector Features and Bug Fixes</span></h2>
@ -472,8 +477,8 @@ streamlining the whole processing chain. Read the online Help for details.
 <p class=MsoNormal><span lang=EN-US>Changes to GUI to make dialog shorter for
 low DPI screens. </span></p>
-<p class=MsoNormal><span lang=EN-US>Complete rewrite of the classification system
+<p class=MsoNormal><span lang=EN-US>Complete rewrite of the classification
-to have nested classifiers which can be enabled or disabled. </span></p>
+system to have nested classifiers which can be enabled or disabled. </span></p>
 <p class=MsoNormal><span lang=EN-US>Changes to classification GUI to
 accommodate the new classification system.</span></p>
@ -581,9 +586,8 @@ the TF FX display to crash if no data were displayed.</span></p>
 <p class=MsoNormal><span lang=EN-US>See major release notes for V 2.02.01
 below. </span></p>
-<p class=MsoNormal><span lang=EN-US>Bug 495: TD FX display throws
+<p class=MsoNormal><span lang=EN-US>Bug 495: TD FX display throws NullPointerException
-NullPointerException if user has removed all data units and then moves mouse
+if user has removed all data units and then moves mouse over display area.</span></p>
 over display area.</span></p>
 <h1><a name="_Latest_Version_2.02.01"></a><span lang=EN-US>Version 2.02.01
 October 2021</span></h1>
@ -594,23 +598,23 @@ understand the notes listed for <a href="#_Latest_Beta_Version_2.00.10">Beta
 Version 2.00.10</a> before proceeding with installation and use of this
 version.</b></p>
-<p class=MsoNormal>This version of PAMGuard has been bundled with Java 16 (OpenJDK
+<p class=MsoNormal>This version of PAMGuard has been bundled with Java 16
-release), so you will not need to install a java runtime engine separately.
+(OpenJDK release), so you will not need to install a java runtime engine
-PSFX files generated in previous beta releases (2.xx.xx) should be compatible
+separately. PSFX files generated in previous beta releases (2.xx.xx) should be
-with this version, and vice-versa. PSF files generated in core releases
+compatible with this version, and vice-versa. PSF files generated in core
-(1.15.xx) can be loaded in this version, but will be converted to PSFX files
+releases (1.15.xx) can be loaded in this version, but will be converted to PSFX
-when PAMGuard exits.</p>
+files when PAMGuard exits.</p>
 <p class=MsoNormal style='margin-bottom:0cm'><span style='font-size:12.0pt;
 font-family:"Times New Roman",serif'>&nbsp;</span></p>
 <h2>File Format Change</h2>
-<p class=MsoNormal>Changes have been made to the binary file format to support the
+<p class=MsoNormal>Changes have been made to the binary file format to support
-output of additional noise outputs for certain detectors (See below). Binary
+the output of additional noise outputs for certain detectors (See below).
-files created with this version will not be compatible with earlier versions
+Binary files created with this version will not be compatible with earlier
-2.01.### and below. This version will read and may convert earlier format
+versions 2.01.### and below. This version will read and may convert earlier
-binary files.</p>
+format binary files.</p>
 <p class=MsoNormal style='margin-bottom:0cm'><span style='font-size:12.0pt;
 font-family:"Times New Roman",serif'>&nbsp;</span></p>
@ -629,9 +633,9 @@ href="http://www.pamguard.org/downloads.php?cat_id=3">here</a>.</p>
 lang=EN-US> </span></p>
 <p class=MsoNormal>This module has been renamed Ã‚Â“Detection GrouperÃ‚Â”, so
-as to avoid confusion with the Group 3D localizer. This is because the
+as to avoid confusion with the Group 3D localizer. This is because the Detection
-Detection Grouper is more for organizing data into groups to be localized than
+Grouper is more for organizing data into groups to be localized than it is for
-it is for doing localization.</p>
+doing localization.</p>
 <p class=MsoNormal><b><span lang=EN-US>Minor Bug Fixes</span></b><span
 lang=EN-US> </span></p>
@ -696,8 +700,8 @@ Upgrades to how PAMGuard lets the user enter custom date formats in the Sound
 Acquisition dialog </p>
 <p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>7. </span><span
-lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span>
+lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span><span
-Extended XML-output support to all of the modules </p>
+lang=EN-US> </span>Extended XML-output support to all of the modules </p>
 <p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>8. </span><span
 lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span>
@ -709,8 +713,8 @@ lang=EN-US> </span>Upgrades to the Symbol Manager framework, to give more
 control over colours and symbols </p>
 <p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>10. </span><span
-lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span>
+lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span><span
-Added an option to hide the ship on the map </p>
+lang=EN-US> </span>Added an option to hide the ship on the map </p>
 <p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>11. </span><span
 lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span>
@ -739,9 +743,9 @@ decimating/upsampling by a non-integer amount </p>
 <p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>16. </span><span
 lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span>
 Noise Level Outputs - as an aid to performance diagnosis, some detectors
-(currently the GPL, Click Detector and Whistle and Moan Detector) are outputting
+(currently the GPL, Click Detector and Whistle and Moan Detector) are
-additional noise metrics to their binary output files. These can be read with
+outputting additional noise metrics to their binary output files. These can be
-the <a href="https://sourceforge.net/projects/pamguard/files/Matlab/">PAMGuard
+read with the <a href="https://sourceforge.net/projects/pamguard/files/Matlab/">PAMGuard
 Matlab library</a> and used to diagnose system performance in varying noise
 conditions. Improved displays within PAMGuard for these noise metrics will be
 included in a future release. </p>
@ -750,9 +754,9 @@ included in a future release. </p>
 lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span>
 An implementation of the Generalized Power Law Detector, developed by Tyler
 Helble ([Helble et al., Ã‚Â‘A generalized power-law detection algorithm for
-humpback whale vocalizationsÃ‚Â’, The Journal of the Acoustical Society of
+humpback whale vocalizationsÂ, The Journal of the Acoustical Society of America,
-America, vol. 131, no. 4, pp. 2682Ã‚Â–2699, 2012) is now available. For
+vol. 131, no. 4, pp. 2682Â2699, 2012) is now available. For details, see the
-details, see the online help </p>
+online help </p>
 <p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>18. </span><span
 lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span>
@ -1087,9 +1091,9 @@ lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nb
 Bug 435. Logger forms subtabs not working.</p>
 <p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>4. </span><span
-lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span>
+lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span><span
-Bug 436. Bug in Serial Port interface was occassionally causing PAMGuard to
+lang=EN-US> </span>Bug 436. Bug in Serial Port interface was occassionally
-crash without error message.</p>
+causing PAMGuard to crash without error message.</p>
 <p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>5. </span><span
 lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span>
@ -1179,8 +1183,8 @@ Functionality to clone hydrophone streamers. </p>
 <p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>5. </span><span
 lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span>
 Added automatic log file - all messages to the console will now be written to a
-txt file as well. File is stored in user.home/Pamguard folder - look under the
+txt file as well. File is stored in user.home/Pamguard folder - look under the Help
-Help menu item for a shortcut to open the folder. </p>
+menu item for a shortcut to open the folder. </p>
 <p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>6. </span><span
 lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span>
@ -1218,9 +1222,9 @@ Detector display. </p>
 <p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>1. </span><span
 lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span><span
-lang=EN-US> </span>This version of PAMGuard has been upgraded to make it
+lang=EN-US> </span>This version of PAMGuard has been upgraded to make it compatible
-compatible with Java 12. psfx files generated in previous beta releases should
+with Java 12. psfx files generated in previous beta releases should be
-be compatible with this version, and vice-versa.</p>
+compatible with this version, and vice-versa.</p>
 <p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2. </span><span
 lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span>
@ -1282,8 +1286,8 @@ lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nb
 Click Train Detector upgrades, including localisation capabilities.</p>
 <p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>4. </span><span
-lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span>
+lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span><span
-Updates to the Ishmael detectors.</p>
+lang=EN-US> </span>Updates to the Ishmael detectors.</p>
 <!-- ************************************************************************************************************************** --><!-- ************************************************************************************************************************** -->
@ -1352,8 +1356,8 @@ files.</p>
 <p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>12. </span><span
 lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
-</span>Bug 425. Rocca crashing if Click Detector is used as source but the Click
+</span>Bug 425. Rocca crashing if Click Detector is used as source but the
-Classifier is not configured properly.</p>
+Click Classifier is not configured properly.</p>
 <p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>13. </span><span
 lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
@ -1580,8 +1584,8 @@ first time the spectrogram dialog is opened.</p>
 <p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>4. </span><span
 lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
-</span>Bug 385. Bug in offline toolbar which will crash if the classifier
+</span>Bug 385. Bug in offline toolbar which will crash if the classifier dialog
-dialog is opened and then closed with no classifiers specified.</p>
+is opened and then closed with no classifiers specified.</p>
 <p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>5. </span><span
 lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
@ -1862,9 +1866,9 @@ window.</p>
 <p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2.</span><span
 lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
-</span>Bug 336. Files were being corrupted if the limit file size option was
+</span>Bug 336. Files were being corrupted if the limit file size option was set
-set to a lower value in viewer than it has been when data were collected -
+to a lower value in viewer than it has been when data were collected - would
-would truncate files being rewritten after change.</p>
+truncate files being rewritten after change.</p>
 <p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>3.</span><span
 lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
@ -1977,8 +1981,9 @@ lang=EN-US> </span>Added a simulated white noise source which can be moved
 around in the same way as other sources. </p>
 <p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>4. </span><span
-lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span>
+lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span><span
-Reworked annotation system, and added annotations to binary storage </p>
+lang=EN-US> </span>Reworked annotation system, and added annotations to binary
 storage </p>
 <p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>5. </span><span
 lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span><span
@ -1999,9 +2004,9 @@ Added circular movement option to source simulation </p>
 <h1><a name="_Latest_Beta_Version_2.00.10"></a><span lang=EN-US>Beta Version
 2.00.10 June 2017</span></h1>
-<p class=MsoNormal><span lang=EN-US>PAMGuard Version 2 contains major updates.
+<p class=MsoNormal><span lang=EN-US>PAMGuard Version 2 contains major updates. You
-You should read and understand these notes before proceeding with installation
+should read and understand these notes before proceeding with installation and
-and use of this version. These changes have been funded under contract to NOAA
+use of this version. These changes have been funded under contract to NOAA
 Fisheries, contract no. WE-133F-16-SE-1126.</span></p>
 <h3><span lang=EN-US>Binary File Structural Changes</span></h3>
@ -2041,9 +2046,9 @@ in both data stores. </span></p>
 added to PAMGuard which can display multiple types of data on the same time
 axis. It can for instance be used to display bearings to whistles on a
 bearing-time type display similar to that commonly used in the click detector.
-Composite display graphs containing data from more than one detector are also
+Composite display graphs containing data from more than one detector are also possible.
-possible. For details, see the PAMGuard help file (Displays / Time Display FX).
+For details, see the PAMGuard help file (Displays / Time Display FX). Note that
-Note that this display is only available if you are running Java 8 or later. </span></p>
+this display is only available if you are running Java 8 or later. </span></p>
 <h3><span lang=EN-US>Event Marking and the Detection Group Localiser</span></h3>
@ -2113,10 +2118,10 @@ lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nb
 <p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>1.</span><span
 lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
-</span>Added Copy-to-Clipboard button to Warning dialogs, to store error
+</span>Added Copy-to-Clipboard button to Warning dialogs, to store error messages
-messages and stack trace information on the Windows clipboard. This information
+and stack trace information on the Windows clipboard. This information can then
-can then be easily pasted into emails, text documents, etc when contacting
+be easily pasted into emails, text documents, etc when contacting Pamguard
-Pamguard support.</p>
+support.</p>
 <p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2.</span><span
 lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
@ -2144,8 +2149,8 @@ list grew to a ridiculous size. Code has been put in place to a) stop it
 happening again and b) to repair any configuration files which are corrupted.
 Corrupted files will be slow to load, slow to save and will be &gt; several
 megabytes in size. It may be necessary to delete the PamguardSettings table in
-any databases since these too may have become oversized which will slow down viewer
+any databases since these too may have become oversized which will slow down
-mode PAMGuard start-up.</p>
+viewer mode PAMGuard start-up.</p>
 <p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2.</span><span
 lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
@ -2169,8 +2174,8 @@ working folder, and therefore is set incorrectly. This has been fixed.</p>
 <p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>5.</span><span
 lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
-</span>Bug 314. If PAMGuard is started by double-clicking on a psf, nothing happens
+</span>Bug 314. If PAMGuard is started by double-clicking on a psf, nothing
-when the user selects save as new configuration. This has been fixed.</p>
+happens when the user selects save as new configuration. This has been fixed.</p>
 <p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>6.</span><span
 lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
@ -2192,9 +2197,9 @@ January 2017</span></h1>
 <p class=MsoListParagraph style='margin-left:38.25pt;text-indent:-20.25pt'><span
 lang=EN-US>1.</span><span lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
 </span><span lang=EN-US>Bug 306. Certain methods have been querying
-AcousticDataUnit.getDuration and expecting to receive a response in
+AcousticDataUnit.getDuration and expecting to receive a response in milliseconds.
-milliseconds. However, getDuration actually returns the number of samples.
+However, getDuration actually returns the number of samples. &nbsp;This has
-&nbsp;This has been corrected. </span></p>
+been corrected. </span></p>
 <p class=MsoNormal><b><span lang=EN-US>Plug-Ins</span></b></p>
@ -2237,9 +2242,9 @@ dependencies)</span></p>
 <p class=MsoNormal><b><span lang=EN-US>Other Changes</span></b></p>
-<p class=MsoNormal><span lang=EN-US>The installer has been updated to handle
+<p class=MsoNormal><span lang=EN-US>The installer has been updated to handle both
-both 64 bit and 32 bit installations. PAMGuard psf files are now registered in
+64 bit and 32 bit installations. PAMGuard psf files are now registered in the
-the Windows Registry, so double-clicking on a psf file should run PAMGuard in
+Windows Registry, so double-clicking on a psf file should run PAMGuard in
 normal mode (as opposed to Viewer or Mixed modes). Note that the Windows
 Registry can only hold a single executable reference for psf files; therefore,
 for users with multiple installations of PAMGuard, double-clicking on a psf
@ -2302,8 +2307,8 @@ until now. It's fixed.</p>
 <p class=MsoListParagraph style='margin-left:40.5pt;text-indent:-22.5pt'>2.<span
 style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
-</span>Bug 292. Incorrect labels on Target Motion panel in viewer - 3D
+</span>Bug 292. Incorrect labels on Target Motion panel in viewer - 3D algorithm
-algorithm was labelled as 2D.Fixed</p>
+was labelled as 2D.Fixed</p>
 <p class=MsoListParagraph style='margin-left:40.5pt;text-indent:-22.5pt'>3.<span
 style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
@ -2313,8 +2318,8 @@ data for the least square model. Both fixed. </p>
 <p class=MsoListParagraph style='margin-left:40.5pt;text-indent:-22.5pt'>4.<span
 style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
-</span>Bug 294. Click classifier was crashing when the 'min amplitude' option was
+</span>Bug 294. Click classifier was crashing when the 'min amplitude' option
-used. This is fixed. </p>
+was used. This is fixed. </p>
 <p class=MsoListParagraph style='margin-left:40.5pt;text-indent:-22.5pt'>5.<span
 style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
@ -2332,8 +2337,8 @@ appear when you right click on the display. </p>
 <p class=MsoListParagraph style='margin-left:40.5pt;text-indent:-22.5pt'>7.<span
 style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
-</span>Bug 297. Airgun display was not correctly showing itself at fixed
+</span>Bug 297. Airgun display was not correctly showing itself at fixed locations,
-locations, but always following the vessel track. This is now fixed. </p>
+but always following the vessel track. This is now fixed. </p>
 <p class=MsoListParagraph style='margin-left:40.5pt;text-indent:-22.5pt'>8.<span
 style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
@ -2399,8 +2404,8 @@ the database. </span></p>
 <p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2.</span><span
 lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
 </span><span lang=EN-US>The number of data streams associated with the click
-detector has been tidied up so that there are a) All Click, b) Tracked Clicks
+detector has been tidied up so that there are a) All Click, b) Tracked Clicks (those
-(those which are part of an event) and c) Events. </span></p>
+which are part of an event) and c) Events. </span></p>
 <p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>3.</span><span
 lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
@ -2422,9 +2427,9 @@ combine automatic and manual tracking. </span></p>
 <p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>6.</span><span
 lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
-</span><span lang=EN-US>Improved options are available to the user, via the
+</span><span lang=EN-US>Improved options are available to the user, via the click
-click detector bearing time display, to correct and relabel clicks / entire
+detector bearing time display, to correct and relabel clicks / entire click
-click trains. </span></p>
+trains. </span></p>
 <p class=MsoNormal><span lang=EN-US>Developers will hopefully find that the
 target motion code has been improved in a way which will make it much easier to
@ -2443,16 +2448,15 @@ intuitive compared to the old method of typing directly into the database. </p>
 <p class=MsoNormal><span lang=EN-US>Users have often found that PAMGuard can be
 'jumpy', i.e. the spectrogram does not scroll smoothly, but pauses for a second
-every few seconds. This is caused by the Java garbage collector cleaning up
+every few seconds. This is caused by the Java garbage collector cleaning up unused
-unused objects in memory. With 64 bit versions, which allow for more memory,
+objects in memory. With 64 bit versions, which allow for more memory, some of
-some of these pauses were becoming quite long (due to the increased amount of
+these pauses were becoming quite long (due to the increased amount of memory
-memory that needed to be cleaned up). In some circumstances, these pauses were
+that needed to be cleaned up). In some circumstances, these pauses were making
-making data acquisition systems unstable. We have therefore entirely rewritten
+data acquisition systems unstable. We have therefore entirely rewritten the way
-the way in which PAMGuard handles arrays of spectrogram data (complex numbers)
+in which PAMGuard handles arrays of spectrogram data (complex numbers) so that
-so that instead of large numbers of small Java objects there are now fewer,
+instead of large numbers of small Java objects there are now fewer, larger,
-larger, simpler java objects. These reduce processing delays for garbage
+simpler java objects. These reduce processing delays for garbage collection and
-collection and give an overall speed improvement, but will otherwise not be
+give an overall speed improvement, but will otherwise not be noticed by users. </span></p>
 noticed by users. </span></p>
 <p class=MsoNormal><i><span lang=EN-US>Click Detector RainbowClick file output</span></i></p>
@ -2600,9 +2604,9 @@ different libraries for control of sound input devices. </span></p>
 <p class=MsoNormal><span lang=EN-US>This is the first release of a 64 bit
 version of PAMGuard. As with the 32 bit version a number of C language
 libraries are required to interface to external sound cards and other data
-acquisition devices. These have been extensively tested on several different
+acquisition devices. These have been extensively tested on several different computers,
-computers, but may not be as stable as the 32 bit versions. Please report any
+but may not be as stable as the 32 bit versions. Please report any problems
-problems immediately to the PAMGuard team. </span></p>
+immediately to the PAMGuard team. </span></p>
 <p class=MsoNormal><b><span lang=EN-US>Other Changes</span></b></p>
@ -2642,9 +2646,9 @@ contains queries. Fixed.</span></p>
 <p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2.</span><span
 lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
-</span><span lang=EN-US>Bug 254. Lookup lists failing in imported SQLite
+</span><span lang=EN-US>Bug 254. Lookup lists failing in imported SQLite databases.
-databases. </span>This was caused by the system 'padding' topic's with blank
+</span>This was caused by the system 'padding' topic's with blank spaces and is
-spaces and is now fixed. </p>
+now fixed. </p>
 <p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>3.</span><span
 lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
@ -2676,8 +2680,8 @@ name="_Toc312065299"></a><a name="_Toc312063944"></a><a name="_Toc312065300"></a
 name="_Toc312063945"></a>Version 1.14.00 Beta, September 2015</h1>
 <p class=MsoNormal>The format of configuration files has changed for version
-1.14.00. Older configurations will load with this new version, but
+1.14.00. Older configurations will load with this new version, but configurations
-configurations saved with 1.14.00 may not open correctly with earlier versions.</p>
+saved with 1.14.00 may not open correctly with earlier versions.</p>
 <p class=MsoNormal>PAMGuard Versions 1.14.00 and above will work with Java 8.
 PAMGuard will continue to work with Java 7, but support for Java 7 will be
@ -2744,9 +2748,9 @@ displaying in the viewer. This is now fixed. </span></p>
 <p class=MsoListParagraph style='margin-left:38.25pt;text-indent:-20.25pt'><span
 lang=EN-US>3.</span><span lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
 </span><span lang=EN-US>Bug 248. Crash in hydrophone array manager. Bug in
-array manager would crash PAMGuard when the click detector was configured with
+array manager would crash PAMGuard when the click detector was configured with more
-more channels than the sound acquisition system (almost impossible to achieve,
+channels than the sound acquisition system (almost impossible to achieve, but
-but someone managed it). </span></p>
+someone managed it). </span></p>
 <p class=MsoListParagraph style='margin-left:38.25pt;text-indent:-20.25pt'><span
 lang=EN-US>4.</span><span lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
@ -2765,8 +2769,8 @@ lang=EN-US>6.</span><span lang=EN-US style='font-size:7.0pt;font-family:"Times N
 <p class=MsoListParagraph style='margin-left:38.25pt;text-indent:-20.25pt'><span
 lang=EN-US>7.</span><span lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
 </span><span lang=EN-US>Bug 252. Bug which plotted bearings to whistle and moan
-detections from the front hydrophone rather than the central position between
+detections from the front hydrophone rather than the central position between hydrophones
-hydrophones now fixed. </span></p>
+now fixed. </span></p>
 <p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>&nbsp;</span></p>
@ -2857,11 +2861,11 @@ which is useful when using PAMGuard for demonstration purposes. </p>
 <p class=MsoListParagraph style='margin-left:47.25pt;text-indent:-29.25pt'><span
 lang=EN-US>4.</span><span lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
-</span>The sound File and Folder audio input systems now have an optional time
+</span>The sound File and Folder audio input systems now have an optional time zone
-zone setting. Note that PAMGuard analysis should still all be taking place in
+setting. Note that PAMGuard analysis should still all be taking place in UTC
-UTC and that this option is intended to allow the conversion of file times
+and that this option is intended to allow the conversion of file times which
-which were not recorded as UTC into UTC and not the other way around. Use the
+were not recorded as UTC into UTC and not the other way around. Use the option
-option with caution !</p>
+with caution !</p>
 <p class=MsoListParagraph style='margin-left:47.25pt;text-indent:-29.25pt'><span
 lang=EN-US>5.</span><span lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
@ -3068,16 +3072,17 @@ PAMGuard should be started and stopped using the red and black buttons.</p>
 <p class=MsoNormal><i>DIFAR</i> (Localisation Group)</p>
 <p class=MsoNormal>This module, funded by the Australian Antarctic Division
-allows the de-multiplexing and calculation of angles from military style DIFAR
+allows the de-multiplexing and calculation of angles from military style DIFAR sonobuoys.
-sonobuoys. See online help for details.&nbsp; </p>
+See online help for details.&nbsp; </p>
 <p class=MsoNormal><i>MEAL Localiser</i> (Localisation Group)</p>
-<p class=MsoNormal>This module, developed by Jamie Macaulay of St Andrews University
+<p class=MsoNormal>This module, developed by Jamie Macaulay of St Andrews
-estimates the 3D localisation of clicks using a variety of algorithms. It's
+University estimates the 3D localisation of clicks using a variety of
-primarily been developed to track harbour porpoise in three dimensions over
+algorithms. It's primarily been developed to track harbour porpoise in three
-scales of 10's of metres. While currently only working with output from the
+dimensions over scales of 10's of metres. While currently only working with
-click detector, we hope eventually to extend its use to whistles as well. </p>
+output from the click detector, we hope eventually to extend its use to
 whistles as well. </p>
 <p class=MsoNormal><i>Accelerometer Readout</i> (Sensors group)</p>
@ -3169,9 +3174,9 @@ File/BinaryStore/Datagram options menu. </p>
 <p class=MsoNormal><i>Viewer Configuration</i></p>
-<p class=MsoNormal>The Viewer configuration is now saved into a separate
+<p class=MsoNormal>The Viewer configuration is now saved into a separate database
-database table from 'normal' settings so that Viewer can run at same time as
+table from 'normal' settings so that Viewer can run at same time as normal
-normal operation, but with slightly different display settings. </p>
+operation, but with slightly different display settings. </p>
 <p class=MsoNormal><i>Spectrogram Display</i></p>
@ -3187,8 +3192,8 @@ horizon. </p>
 <p class=MsoNormal><i>Improved Filter Options</i></p>
-<p class=MsoNormal>Filter options (used as stand-alone filter modules and also within
+<p class=MsoNormal>Filter options (used as stand-alone filter modules and also
-many other modules, such as the click detector and the Filtered Noise
+within many other modules, such as the click detector and the Filtered Noise
 Measurement module) have been improved so that the user can specify arbitrarily
 shaped Finite Impulse Response filters (see online help for details). </p>
@ -3247,11 +3252,10 @@ whistle.</p>
 <li class=MsoNormal style='margin-bottom:0cm'>Storage options (<a
     href="https://sourceforge.net/p/pamguard/bugs/175/">https://sourceforge.net/p/pamguard/bugs/175/</a>)
     whereby clicks were stored to database is now fixed. </li>
- <li class=MsoNormal style='margin-bottom:0cm'>Sound Recorder output folder is
+ <li class=MsoNormal style='margin-bottom:0cm'>Sound Recorder output folder is now
-     now defaulting to the User folder (Generally
+     defaulting to the User folder (Generally C:\Users\username\PAMRecordings)
-     C:\Users\username\PAMRecordings) instead of C:\Program Files
+     instead of C:\Program Files (x86)\PamguardBeta which didn't work since the
-     (x86)\PamguardBeta which didn't work since the software doesn't have write
+     software doesn't have write access to that folder. </li>
     access to that folder. </li>
 </ol>
 <p class=MsoNormal>&nbsp;</p>
@ -3338,9 +3342,9 @@ information correctly in the binary files. </p>
 <p class=MsoNormal style='margin-left:36.0pt'><i>Logger Forms</i></p>
-<p class=MsoNormal style='margin-left:36.0pt'>A substantial amount of work has
+<p class=MsoNormal style='margin-left:36.0pt'>A substantial amount of work has been
-been carried out on Logger forms, funded by the South West fisheries Science
+carried out on Logger forms, funded by the South West fisheries Science Center.
-Center. </p>
+</p>
 <p class=MsoNormal style='margin-left:36.0pt'><i>Click Detector</i></p>
@ -3529,8 +3533,8 @@ features of the display:</p>
 <p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
 Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
-</span>The spectrogram will automatically generate and display spectrogram data.
+</span>The spectrogram will automatically generate and display spectrogram
-</p>
+data. </p>
 <p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
 Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
@ -3644,8 +3648,8 @@ Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif
 <p class=MsoNormal>The offline viewer is much improved with better data
 scrolling and the ability to view data either stored in the database or the
 binary storage system. Work has stated on functions which read and use data
-stored in audio files. This is currently limited to re-calculating and displaying
+stored in audio files. This is currently limited to re-calculating and
-displaying spectrogram data during viewer mode operation.&nbsp; </p>
+displaying displaying spectrogram data during viewer mode operation.&nbsp; </p>
 <p class=MsoNormal>3. Heading sensor readout</p>
@ -3719,14 +3723,14 @@ lookup tables relating hardware channel numbers to internal channel numbers.
 0 and 1 from a normal sound card or a list of channels 0,1,2,3, etc from an
 ASIO card or National Instruments card. However, when using the ASIO sound
 acquisition system, it is possible to read out hardware channels 2,3,4,5 say
-and those numbers would propagate through PAMGUARD and be used by all the detectors.
+and those numbers would propagate through PAMGUARD and be used by all the
-While this gave some clarity to&nbsp; the displays, it also created a number of
+detectors. While this gave some clarity to&nbsp; the displays, it also created
-problems since look up tables were constantly required to relate hardware
+a number of problems since look up tables were constantly required to relate
-numbers and software numbers in every PAMGUARD module. Since this type of
+hardware numbers and software numbers in every PAMGUARD module. Since this type
-channel numbering was only implemented several years into the PAMGUARD project,
+of channel numbering was only implemented several years into the PAMGUARD
-it was never fully implemented or well supported by the different modules which
+project, it was never fully implemented or well supported by the different
-resulted in a number of bugs which could cause confusion as to which
+modules which resulted in a number of bugs which could cause confusion as to
-hydrophones were being used during localisation or during calibrated
+which hydrophones were being used during localisation or during calibrated
 measurement. The situation tended to only arise with a small number of ASIO
 sound cards such as the RME Fireface 400 on which the most useful inputs, the
 balanced line inputs, are hardware channels 4,5,6 and 7 on the back of the
@ -3741,10 +3745,10 @@ re-label those channels 0,1,2,3. </p>
 <p class=MsoNormal>There have been other annoyances with the ASIO channel
 numbering scheme. For instance, if you had a configuration which worked in real
 time using channels 7 and 8 of a sound card, you could not use that same
-configuration to analyse wav files, which would always read their data as channels
+configuration to analyse wav files, which would always read their data as
-0 and 1. Similarly if you switched sound cards, you may have to reconfigure
+channels 0 and 1. Similarly if you switched sound cards, you may have to
-every detector and several of the displays to handle the changes in channel
+reconfigure every detector and several of the displays to handle the changes in
-numbering. </p>
+channel numbering. </p>
 <p class=MsoNormal>I have spent a considerable amount of time trying to work
 out a better system for handling channel numbering in PAMGUARD and have decided
@ -3784,8 +3788,8 @@ minute of data during real time operation. </p>
 <p class=MsoNormal>PAMGUARD Viewer scrolling mechanism has changed. </p>
-<p class=MsoNormal>Each display now has a small control in the right hand end
+<p class=MsoNormal>Each display now has a small control in the right hand end of
-of a scroll bar or a slider which allows you to page through data. This is only
+a scroll bar or a slider which allows you to page through data. This is only
 well implemented for the map, but will be an increasingly important feature as
 more displays are set up for offline data viewing in future releases. </p>
@ -3940,10 +3944,10 @@ synchronisation.</p>
 <p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
 Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
-</span>Wigner time-frequency plot for the click detector. Clicks are NOT automatically
+</span>Wigner time-frequency plot for the click detector. Clicks are NOT
-displayed in the Winger window as they are for the waveform and spectrum
+automatically displayed in the Winger window as they are for the waveform and
-windows since the Wigner transformation is very time consuming. Clicks will be
+spectrum windows since the Wigner transformation is very time consuming. Clicks
-displayed if you select them with the mouse.</p>
+will be displayed if you select them with the mouse.</p>
 <p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
 Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
@ -4174,9 +4178,9 @@ Mac/Linux machines)</p>
 <p class=MsoNormal>Parameters dialog shows correct channel numbers</p>
-<p class=MsoNormal>Click classifier mean filter option had a computational error
+<p class=MsoNormal>Click classifier mean filter option had a computational
-which meant that classifiers using this option would not work. This has now
+error which meant that classifiers using this option would not work. This has
-been fixed. </p>
+now been fixed. </p>
 <p class=MsoNormal><b>Sound Recorder</b></p>
@ -4404,8 +4408,8 @@ channels or textual content change. </p>
 <p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
 Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
-</span>Model viewer. Have stopped it from jumping on top of the main PAMGUARD &nbsp;display
+</span>Model viewer. Have stopped it from jumping on top of the main PAMGUARD
-when dialogs are closed. </p>
+&nbsp;display when dialogs are closed. </p>
 <p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
 Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
--- a/dependency-reduced-pom.xml
+++ b/dependency-reduced-pom.xml
@ -4,7 +4,7 @@
  <groupId>org.pamguard</groupId>
  <artifactId>Pamguard</artifactId>
  <name>Pamguard Java12+</name>
-  <version>2.02.04ae</version>
+  <version>2.02.05a</version>
  <description>Pamguard for Java 12+, using Maven to control dependcies</description>
  <url>www.pamguard.org</url>
  <organization>
--- a/src/soundtrap/sud/SudFileDWVHandler.java
+++ b/src/soundtrap/sud/SudFileDWVHandler.java
@ -83,8 +83,8 @@ public class SudFileDWVHandler implements SUDNotificationHandler {
 	@Override
 	public void sudStreamClosed() {
-		System.out.printf("SUD input stream closed, %d DWV, %d bcl Detectins and %d BCL Noise, %d chunks processed\n",
+//		System.out.printf("SUD input stream closed, %d DWV, %d bcl Detectins and %d BCL Noise, %d chunks processed\n",
-				dwvCount, bclDetCount, bclNoiseCount, processedChunks);
+//				dwvCount, bclDetCount, bclNoiseCount, processedChunks);
 	}
 	@Override