Merge pull request #1 from PAMGuard/main

Fixes to NoGUI, Network send and spectrogram graphics.  (#23)

src/PamController/PamController.java

@@ -54,6 +54,7 @@ import generalDatabase.DBControlUnit;
 import javafx.stage.Stage;
 import Array.ArrayManager;
 import PamController.command.NetworkController;
+import PamController.command.TerminalController;
 import PamController.command.WatchdogComms;
 import PamController.masterReference.MasterReferencePoint;
 import PamController.settings.output.xml.PamguardXMLWriter;
@@ -269,6 +270,11 @@ public class PamController implements PamControllerInterface, PamSettings {
 		setupPamguard();
 
 		setupGarbageCollector();
+		
+
+//		if (PamGUIManager.getGUIType() == PamGUIManager.NOGUI) {
+//		}
+		
 		//		diagnosticTimer = new Timer(1000, new DiagnosticTimer());
 		//		diagnosticTimer.start();
 	}
@@ -293,7 +299,10 @@ public class PamController implements PamControllerInterface, PamSettings {
 	 */
 	public static void create(int runMode) {
 		if (uniqueController == null) {
-			new PamController(runMode, null);
+			PamController pamcontroller = new PamController(runMode, null);
+			// I don't see any reason not have have this running with the GUI. 
+			TerminalController tc = new TerminalController(pamcontroller);
+			tc.getTerminalCommands();
 		}
 	}
 	

src/PamController/PamGUIManager.java

@@ -1,6 +1,7 @@
 package PamController;
 
 import PamView.GuiFrameManager;
+import PamView.NullGuiController;
 import pamViewFX.PamGuiManagerFX;
 
 /**
@@ -39,7 +40,7 @@ public class PamGUIManager {
 	public static PAMControllerGUI createGUI(PamController pamController, Object object) {
 		switch (guiType) {
 		case NOGUI: 
-			return null; 
+			return new NullGuiController(pamController); 
 		case SWING: 
 			return new GuiFrameManager(pamController); 
 		case FX: 

src/PamController/command/CommandManager.java

@@ -0,0 +1,118 @@
+package PamController.command;
+
+import java.util.ArrayList;
+
+import PamController.PamControlledUnit;
+import PamController.PamController;
+
+/**
+ * Interpret commands which may have come either from a terminal or from a Network 
+ * (e.g. UDP) interface. 
+ * @author dg50
+ *
+ */
+public abstract class CommandManager extends PamControlledUnit {
+
+	private PamController pamController;
+
+	private static String unitType = "Command Manager";
+
+	private ArrayList<ExtCommand> commandsList = new ArrayList<ExtCommand>();
+	
+	public CommandManager(PamController pamController, String unitName) {
+		super(unitType, unitName);
+		this.pamController = pamController;
+
+		commandsList.add(new StartCommand());
+		commandsList.add(new StopCommand());
+		commandsList.add(new PingCommand());
+		commandsList.add(new StatusCommand());
+		commandsList.add(new SummaryCommand());
+		commandsList.add(new ExitCommand());
+		commandsList.add(new KillCommand());
+		commandsList.add(new HelpCommand(this));
+		
+	}
+
+	protected ArrayList<ExtCommand> getCommandsList() {
+		return commandsList;
+	}
+
+	public ExtCommand findCommand(String command) {
+		for (ExtCommand aCommand:commandsList) {
+			if (aCommand.getName().equals(command)) {
+				return aCommand;
+			}
+		}
+		return null;
+	}
+
+	/**
+	 * Interpret and act on a udp command string. 
+	 * @param command command string
+	 * @return false if the command was to exit
+	 * the program (in which case this thread will
+	 * exit and close the port). True otherwise. 
+	 */
+	public boolean interpretCommand(String command) {
+		//System.out.println(String.format("New UDP Command %s", command));
+		
+		command = command.toLowerCase();
+		// strip of the first two letters if they begin pg ...
+		if (command.substring(0,2).equals("pg")) {
+			command = command.substring(2); 
+		}
+		ExtCommand extCommand = findCommand(command);
+		if (extCommand == null) {
+			sendData("Cmd \"" + command + "\" Not Recognised.");
+			return false;
+		}
+		if (extCommand.canExecute() == false) {
+			sendData("Cmd \"" + command + "\" Cannot Execute.");
+			sendData("   Cmd return string = " + extCommand.getReturnString());
+			return false;
+		}
+		extCommand.execute();
+		sendData(extCommand.getReturnString());
+		
+//		
+//		if (command.equals("pgstart")) {
+//			sendData("PgAck " + "pgstart");
+//			pamController.pamStart();
+//		}
+//		else if (command.equals("pgstop")) {
+//			sendData("PgAck " + "pgstop");
+//			pamController.pamStop();
+//		}
+//		else if (command.equals("pgping")) {
+//			sendData("PgAck " + "pgping");
+//		}
+//		else if (command.equals("pgstatus")) {
+//			sendData("PgAck Status " + pamController.getPamStatus());
+//		}
+//		else if (command.equals("pgsetrec")) {
+//			sendData("PgAck pgsetrec");
+//			
+//			//triggerRecording(String name, int seconds);
+//		}
+//		else if (command.equals("pgexit")) {
+//			sendData("Exiting PAMGUARD");
+//			System.exit(0);
+//			return false;
+//		}
+//		else{
+//			sendData("PgAck " + "Cmd Not Recognised.");
+//		}
+
+		
+		return true;
+	}
+
+	/**
+	 * Reply to data called from InterpredData
+	 * @param dataString
+	 * @return true if replay successful
+	 */
+	abstract public boolean sendData(String dataString); 
+
+}

src/PamController/command/ExitCommand.java

@@ -21,7 +21,11 @@ public class ExitCommand extends ExtCommand {
 		System.exit(0);
 		return true;
 	}
-	
+
+	@Override
+	public String getHint() {
+		return "Exit PAMGuard, stopping detectors prior to exiting";
+	}
 
 
 }

src/PamController/command/ExtCommand.java

@@ -107,5 +107,11 @@ public abstract class ExtCommand {
 		this.immediate = immediate;
 	}
 	
-	
+	/**
+	 * Get a hint text for the help command. 
+	 * @return hint text. 
+	 */
+	public String getHint() {
+		return null;
+	};
 }

src/PamController/command/HelpCommand.java

@@ -0,0 +1,42 @@
+package PamController.command;
+
+import java.util.ArrayList;
+
+public class HelpCommand extends ExtCommand {
+
+	private CommandManager commandManager;
+
+	public HelpCommand(CommandManager commandManager) {
+		super("help", true);
+		this.commandManager = commandManager;
+	}
+
+	@Override
+	public boolean execute() {
+		ArrayList<ExtCommand> commands = commandManager.getCommandsList();
+		String out = "Available commands are:\n";
+		for (ExtCommand command : commands) {
+			out += command.getName();
+			String hint = command.getHint();
+			if (hint != null) {
+				out += String.format(": %s\n", hint);
+			}
+			else {
+				out += "\n";
+			}
+		}
+		commandManager.sendData(out);
+		return true;
+	}
+
+	@Override
+	public String getReturnString() {
+		return super.getReturnString();
+	}
+
+	@Override
+	public String getHint() {
+		return "Get a list of available commands";
+	}
+
+}

src/PamController/command/KillCommand.java

@@ -17,5 +17,10 @@ public class KillCommand extends ExtCommand {
 		System.exit(0);
 		return true;
 	}
+	
+	@Override
+	public String getHint() {
+		return "kill PAMguard, don't necessarily stop detectors or clean anything up";
+	}
 
 }

src/PamController/command/NetworkController.java

@@ -25,7 +25,7 @@ import SoundRecorder.trigger.RecorderTriggerData;
  * @author Doug Gillespie
  *
  */
-public class NetworkController extends PamControlledUnit {
+public class NetworkController extends CommandManager {
 
 	
 	private PamController pamController;
@@ -44,22 +44,12 @@ public class NetworkController extends PamControlledUnit {
 	
 	private NetworkRecorderTrigger[] recorderTriggers;
 	
-	private static String unitType = "Network Controller";
+	private static String unitName = "Network Controller";
-	
-	private ArrayList<ExtCommand> networkCommands = new ArrayList<ExtCommand>();
 
 	public NetworkController(PamController pamController) {
-		super(unitType, unitType);
+		super(pamController, unitName);
 		this.pamController = pamController;
 		
-		networkCommands.add(new StartCommand());
-		networkCommands.add(new StopCommand());
-		networkCommands.add(new PingCommand());
-		networkCommands.add(new StatusCommand());
-		networkCommands.add(new SummaryCommand());
-		networkCommands.add(new ExitCommand());
-		networkCommands.add(new KillCommand());
-		
 		listenerThread = new ListenerThread();
 		Thread aThread = new Thread(listenerThread);
 		aThread.start();
@@ -130,77 +120,8 @@ public class NetworkController extends PamControlledUnit {
 		}
 	}
 
-	/**
-	 * Interpret and act on a udp command string. 
-	 * @param command command string
-	 * @return false if the command was to exit
-	 * the program (in which case this thread will
-	 * exit and close the port). True otherwise. 
-	 */
-	private boolean interpretCommand(String command) {
-		//System.out.println(String.format("New UDP Command %s", command));
-		
-		command = command.toLowerCase();
-		// strip of the first two letters if they begin pg ...
-		if (command.substring(0,2).equals("pg")) {
-			command = command.substring(2); 
-		}
-		ExtCommand extCommand = findCommand(command);
-		if (extCommand == null) {
-			sendData("Cmd \"" + command + "\" Not Recognised.");
-			return false;
-		}
-		if (extCommand.canExecute() == false) {
-			sendData("Cmd \"" + command + "\" Cannot Execute.");
-			sendData("   Cmd return string = " + extCommand.getReturnString());
-			return false;
-		}
-		extCommand.execute();
-		sendData(extCommand.getReturnString());
-		
-//		
-//		if (command.equals("pgstart")) {
-//			sendData("PgAck " + "pgstart");
-//			pamController.pamStart();
-//		}
-//		else if (command.equals("pgstop")) {
-//			sendData("PgAck " + "pgstop");
-//			pamController.pamStop();
-//		}
-//		else if (command.equals("pgping")) {
-//			sendData("PgAck " + "pgping");
-//		}
-//		else if (command.equals("pgstatus")) {
-//			sendData("PgAck Status " + pamController.getPamStatus());
-//		}
-//		else if (command.equals("pgsetrec")) {
-//			sendData("PgAck pgsetrec");
-//			
-//			//triggerRecording(String name, int seconds);
-//		}
-//		else if (command.equals("pgexit")) {
-//			sendData("Exiting PAMGUARD");
-//			System.exit(0);
-//			return false;
-//		}
-//		else{
-//			sendData("PgAck " + "Cmd Not Recognised.");
-//		}
-
-		
-		return true;
-	}
 	
-	private ExtCommand findCommand(String command) {
+	public boolean sendData(String dataString) {
-		for (ExtCommand aCommand:networkCommands) {
-			if (aCommand.getName().equals(command)) {
-				return aCommand;
-			}
-		}
-		return null;
-	}
-
-	private boolean sendData(String dataString) {
 		DatagramPacket packet = new DatagramPacket(dataString.getBytes(), dataString.length());
 		packet.setAddress(udpPacket.getAddress());
 		packet.setPort(udpPacket.getPort());
@@ -229,6 +150,7 @@ public class NetworkController extends PamControlledUnit {
 		return new String(udpPacket.getData(), 0, udpPacket.getLength());
 	}
 
+	@Override
 	public void notifyModelChanged(int changeType) {
 		switch (changeType){
 		case PamControllerInterface.INITIALIZATION_COMPLETE:

src/PamController/command/PingCommand.java

@@ -13,4 +13,8 @@ public class PingCommand extends ExtCommand {
 		return true;
 	}
 
+	@Override
+	public String getHint() {
+		return "ping PAMGuard to see if it's alive";
+	}
 }

src/PamController/command/StartCommand.java

@@ -35,4 +35,9 @@ public class StartCommand extends ExtCommand {
 		return returnString;
 	}
 
+	@Override
+	public String getHint() {
+		return "Start PAMGuard processing";
+	}
+
 }

src/PamController/command/StatusCommand.java

@@ -61,4 +61,9 @@ public class StatusCommand extends ExtCommand {
 		return watchdogComms.getModifiedWatchdogState(status);
 	}
 
+
+	@Override
+	public String getHint() {
+		return "Get the current PAMGuard status. 0=idle, 1=running";
+	}
 }

src/PamController/command/StopCommand.java

@@ -15,4 +15,8 @@ public class StopCommand extends ExtCommand {
 	}
 
 
+	@Override
+	public String getHint() {
+		return "Stop PAMGuard processing";
+	}
 }

src/PamController/command/SummaryCommand.java

@@ -35,7 +35,7 @@ public class SummaryCommand extends ExtCommand {
 			lastCallTime = PamCalendar.getSessionStartTime();
 		}
 		long nowTime = PamCalendar.getTimeInMillis();
-		totalString = PamCalendar.formatDateTime(lastCallTime) + "-" + PamCalendar.formatDateTime(nowTime);
+		totalString = PamCalendar.formatDBDateTime(lastCallTime) + "-" + PamCalendar.formatDBDateTime(nowTime);
 		int usedModules = 0;
 		for (int i = 0; i < nMod; i++) {
 			aModule = pamController.getControlledUnit(i);
@@ -44,16 +44,14 @@ public class SummaryCommand extends ExtCommand {
 				continue;
 			}
 			usedModules ++;
-			/*
-		strcat(moduleSummaryText, "\n");
-		strcat(moduleSummaryText, module->getModuleName());
-		strcat(moduleSummaryText, ":");
-		strcat(moduleSummaryText, moduleText);
-			 */
 			totalString += String.format("\n<%s>%s:%s<\\%s>", aModule.getShortUnitType(), 
 					aModule.getUnitName(), aString, aModule.getShortUnitType());
 		}
 		return totalString;
 	}
 
+	@Override
+	public String getHint() {
+		return "Get summary information about each running process";
+	}
 }

src/PamController/command/TerminalController.java

@@ -0,0 +1,69 @@
+package PamController.command;
+
+import java.io.BufferedReader;
+import java.io.IOException;
+import java.io.InputStreamReader;
+
+import PamController.PamController;
+
+public class TerminalController extends CommandManager {
+
+	private BufferedReader reader;
+
+	private static String unitName = "Terminal Controller";
+	
+	public TerminalController(PamController pamController) {
+		super(pamController, unitName);
+	}
+
+	@Override
+	public boolean sendData(String dataString) {
+		System.out.println(dataString);
+		return true;
+	}
+
+	@Override
+	public void pamClose() {
+		super.pamClose();
+		try {
+			reader.close();
+		} catch (IOException e) {
+			e.printStackTrace();
+		}
+	}
+
+	public void getTerminalCommands() {
+		Thread t = new Thread(new TerminalTread());
+		t.start();
+	}
+	
+	private class TerminalTread implements Runnable {
+
+		@Override
+		public void run() {
+			readCommands();
+		}
+		
+	}
+	
+	private void readCommands() {
+
+        reader = new BufferedReader(
+        		new InputStreamReader(System.in));
+        try {
+        	while (true) {
+        		String command = reader.readLine();
+        		if (command != null && command.length() > 0) {
+        			interpretCommand(command);
+        		}
+//        		System.out.println("you typed: " + inLine);
+//        		if (inLine.contains("exit")) {
+//        			break;
+//        		}
+        	}
+        } catch (IOException e) {
+        	e.printStackTrace();
+        } 
+        System.out.println("Exiting PAMGuard, leave control thread");
+	}
+}

src/PamView/NullGuiController.java

@@ -0,0 +1,140 @@
+package PamView;
+
+import javax.swing.JFrame;
+
+import PamController.PAMControllerGUI;
+import PamController.PamControlledUnit;
+import PamController.PamController;
+import PamController.PamSettings;
+import PamModel.PamModel;
+import PamModel.PamModuleInfo;
+import pamViewFX.pamTask.PamTaskUpdate;
+
+/**
+ * Null GUI controller which will get used with the -nogui options. 
+ * @author dg50
+ *
+ */
+public class NullGuiController implements PAMControllerGUI {
+
+	private PamController pamController;
+
+	public NullGuiController(PamController pamController) {
+		this.pamController = pamController;
+	}
+
+	@Override
+	public void pamStarted() {
+		// TODO Auto-generated method stub
+
+	}
+
+	@Override
+	public void pamEnded() {
+		// TODO Auto-generated method stub
+
+	}
+
+	@Override
+	public void modelChanged(int changeType) {
+		// TODO Auto-generated method stub
+
+	}
+
+	@Override
+	public void addControlledUnit(PamControlledUnit controlledUnit) {
+		// TODO Auto-generated method stub
+
+	}
+
+	@Override
+	public void showControlledUnit(PamControlledUnit unit) {
+		// TODO Auto-generated method stub
+
+	}
+
+	@Override
+	public void removeControlledUnit(PamControlledUnit controlledUnit) {
+		// TODO Auto-generated method stub
+
+	}
+
+	@Override
+	public void setTitle(String title) {
+		// TODO Auto-generated method stub
+
+	}
+
+	@Override
+	public int getFrameNumber() {
+		// TODO Auto-generated method stub
+		return 0;
+	}
+
+	@Override
+	public JFrame getGuiFrame() {
+		// TODO Auto-generated method stub
+		return null;
+	}
+
+	@Override
+	public void enableGUIControl(boolean enable) {
+		// TODO Auto-generated method stub
+
+	}
+
+	@Override
+	public void addView(PamViewInterface newView) {
+		// TODO Auto-generated method stub
+
+	}
+
+	@Override
+	public void destroyModel() {
+		// TODO Auto-generated method stub
+
+	}
+
+	@Override
+	public void notifyModelChanged(int changeType) {
+		// TODO Auto-generated method stub
+
+	}
+
+	@Override
+	public void notifyLoadProgress(PamTaskUpdate progress) {
+		// TODO Auto-generated method stub
+
+	}
+
+	@Override
+	public PamSettings getInitialSettings() {
+		// TODO Auto-generated method stub
+		return null;
+	}
+
+	@Override
+	public void init() {
+		// TODO Auto-generated method stub
+
+	}
+
+	@Override
+	public PamViewInterface initPrimaryView(PamController pamController, PamModel pamModelInterface) {
+		// TODO Auto-generated method stub
+		return null;
+	}
+
+	@Override
+	public boolean hasCallBack() {
+		// TODO Auto-generated method stub
+		return false;
+	}
+
+	@Override
+	public String getModuleName(Object parentFrame, PamModuleInfo moduleInfo) {
+		// TODO Auto-generated method stub
+		return null;
+	}
+
+}

src/PamView/PamDetectionOverlayGraphics.java

@@ -700,8 +700,11 @@ public class PamDetectionOverlayGraphics extends PanelOverlayDraw {
 				pamDetection.getSampleDuration() * 1000./parentDataBlock.getSampleRate(),
 				frequency[0], 0);
 				
+		boolean isWrapped = false;
 		if (botRight.x < topLeft.x){
-			botRight.x = g.getClipBounds().width;
+			// this means it's wrapped.
+			isWrapped = true;
+			botRight.x += g.getClipBounds().width;
 		}
 		if (generalProjector.isViewer()) {
 			Coordinate3d middle = new Coordinate3d();
@@ -723,8 +726,13 @@ public class PamDetectionOverlayGraphics extends PanelOverlayDraw {
 			// Not actually drawing on a spectrogramProjector, so don't have any info on the background color
 		}
 
+		if (isWrapped) {
+			g.drawRect((int) topLeft.x-g.getClipBounds().width, (int) topLeft.y, 
+					(int) botRight.x - (int) topLeft.x, (int) botRight.y - (int) topLeft.y);
+		}
 		g.drawRect((int) topLeft.x, (int) topLeft.y, 
 				(int) botRight.x - (int) topLeft.x, (int) botRight.y - (int) topLeft.y);
+		
 		return new Rectangle((int) topLeft.x, (int) topLeft.y, 
 				(int) botRight.x - (int) topLeft.x, (int) botRight.y - (int) topLeft.y);
 	}

src/RightWhaleEdgeDetector/RWEOverlayGraphics.java

@@ -65,12 +65,17 @@ public class RWEOverlayGraphics extends PamDetectionOverlayGraphics {
 		int[] polyY = new int[pf.length];
 		int[] edgeX = new int[pf.length*2];
 		int[] edgeY = new int[pf.length*2];
+		boolean isWrapped = false;
 		for (int i = 0, j = pf.length*2-1; i < pf.length; i++, j--) {
 			double t = t0 + (double) tbin[i] * ffthop / fs * 1000.;
 			double f = pf[i] * fs/fftLen;
 			 Point2D pos = generalProjector.getCoord3d(t, f, 0).getPoint2D();
 			 polyX[i] = (int) pos.getX();
 			 polyY[i] = (int) pos.getY();
+			 if (polyX[i] < polyX[0]) {
+				 isWrapped = true;
+				 polyX[i] += g.getClipBounds().width;
+			 }
 			 edgeX[i] = edgeX[j] = polyX[i];
 			 Point2D pe = generalProjector.getCoord3d(t, highF[i]*fs/fftLen, 0).getPoint2D();
 			 edgeY[i] = (int) pe.getY();
@@ -87,6 +92,13 @@ public class RWEOverlayGraphics extends PamDetectionOverlayGraphics {
 		}		
 //		g.drawPolyline(polyX, polyY, polyX.length);
 		g.drawPolygon(edgeX, edgeY, edgeX.length);
+		if (isWrapped) {
+			int dx = g.getClipBounds().width;
+			for (int i = 0; i < edgeX.length; i++) {
+				edgeX[i] -= dx;
+			}
+			g.drawPolygon(edgeX, edgeY, edgeX.length);
+		}
 		
 		return r;
 	}

src/networkTransfer/receive/NetworkReceiver.java

@@ -646,15 +646,17 @@ public class NetworkReceiver extends PamControlledUnit implements PamSettings, N
 		try {
 			objectId = ds.readInt();
 			moduleVersion = ds.readInt();
-			baseData.readBaseData(ds, receivedData.getDataVersion());
 //			millis = ds.readLong();
 //			if (dataVersion2 >= 2) {
 //				nanos = ds.readLong();
 //				channelMap = ds.readInt();
 //			}
+			baseData.readBaseData(ds, receivedData.getDataVersion());
 			dataLength = ds.readInt();
 			data = new byte[dataLength];
-			ds.read(data);
+			int bytesRead = ds.read(data);
+//			System.out.printf("NetRX read %d of expected %d bytes\n", bytesRead, dataLength);
+//			if (1>0) return null;
 			ds.close();
 		} catch (IOException e) {
 			e.printStackTrace();

src/networkTransfer/send/NetworkObjectPacker.java

@@ -6,12 +6,13 @@ import java.io.IOException;
 
 import networkTransfer.NetworkObject;
 import networkTransfer.receive.NetworkReceiver;
-
+import PamguardMVC.DataUnitBaseData;
 import PamguardMVC.PamDataBlock;
 import PamguardMVC.PamDataUnit;
 
 import binaryFileStorage.BinaryDataSource;
 import binaryFileStorage.BinaryObjectData;
+import binaryFileStorage.BinaryStore;
 import jsonStorage.JSONObjectDataSource;
 
 //import com.sun.xml.internal.messaging.saaj.util.ByteOutputStream;
@@ -73,16 +74,23 @@ public class NetworkObjectPacker {
 		short dataType1 = NetworkReceiver.NET_PAM_DATA;
 		BinaryDataSource binarySource = dataBlock.getBinaryDataSource();
 		int dataType2 = dataBlock.getQuickId();
+		
 		BinaryObjectData packedObject = binarySource.getPackedData(dataUnit);
 		byte[] data = packedObject.getData();
-		int duDataLength = data.length + 20;
+		int duDataLength = data.length + 12;
+		DataUnitBaseData baseData = dataUnit.getBasicData();
+		int baseDataLength = baseData.getBaseDataBinaryLength();
+		duDataLength += baseDataLength;
+		
+		
 //		ByteOutputStream bos = new ByteOutputStream(duDataLength);
 		ByteArrayOutputStream bos = new ByteArrayOutputStream(duDataLength);
 		DataOutputStream dos = new DataOutputStream(bos);
-		try {
+		try { // these are the extra 20 bytes refered to above. 
 			dos.writeInt(packedObject.getObjectType());
 			dos.writeInt(binarySource.getModuleVersion());
-			dos.writeLong(dataUnit.getTimeMilliseconds());
+//			dos.writeLong(dataUnit.getTimeMilliseconds());
+			baseData.writeBaseData(dos, BinaryStore.getCurrentFileFormat());
 			dos.writeInt(data.length);
 			dos.write(data);
 		} catch (IOException e) {
@@ -131,7 +139,7 @@ public class NetworkObjectPacker {
 		try {
 			dos.writeInt(DATASTARTFLAG);
 			dos.writeInt(totalSize);
-			dos.writeShort(1); // header version
+			dos.writeShort(BinaryStore.getCurrentFileFormat()); // header version
 			dos.writeShort(buoyId1);
 			dos.writeShort(buoyId2);
 			dos.writeShort(dataType1);

src/pamguard/Pamguard.java

@@ -28,6 +28,7 @@ import PamController.PamGUIManager;
 import PamController.PamSettingManager;
 import PamController.PamguardVersionInfo;
 import PamController.pamBuoyGlobals;
+import PamController.command.TerminalController;
 import PamModel.SMRUEnable;
 import PamUtils.FileFunctions;
 import PamUtils.PamExceptionHandler;
@@ -298,7 +299,7 @@ public class Pamguard {
 		if(runMode == PamController.RUN_REMOTE) {
 			spashTime = 0;
 		}
-		if (spashTime > 0) {
+		if (spashTime > 0 && (PamGUIManager.getGUIType() != PamGUIManager.NOGUI)) {
 			new Splash(spashTime, chosenRunMode);
 		}
 		//		
@@ -323,9 +324,11 @@ public class Pamguard {
 		else {
 			PamController.create(chosenRunMode);
 		}		
+		
 
 	}
 
+
 	static private String writePropertyString(String key) {
 		String property = System.getProperty(key);
 		if (property == null) {