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Functional SUD Reader and SUD Click Extractor
All seems working. Seems to throw the odd exception at end of file, but works OK.
This commit is contained in:
Douglas Gillespie
parent
d1af000040
commit
d3277be3b1
433
README.html
433
README.html
@ -15,12 +15,12 @@
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@font-face
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{font-family:"Calibri Light";
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panose-1:2 15 3 2 2 2 4 3 2 4;}
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@font-face
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{font-family:Tahoma;
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panose-1:2 11 6 4 3 5 4 4 2 4;}
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@font-face
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{font-family:Cambria;
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panose-1:2 4 5 3 5 4 6 3 2 4;}
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@font-face
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{font-family:Tahoma;
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panose-1:2 11 6 4 3 5 4 4 2 4;}
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/* Style Definitions */
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p.MsoNormal, li.MsoNormal, div.MsoNormal
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{margin-top:0cm;
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@ -368,8 +368,8 @@ should be something like:</p>
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-Xms384m -Xmx4096m -Djava.library.path=lib64 -jar Pamguard_xxxxxx.jar</span></em></p>
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<p class=MsoNormal>The -Xms384m -Xmx4096m specify the initial and maximum heap
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size for the JVM being used to run Pamguard i.e. how much memory it gets to use.
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The default max size usually being too low.</p>
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size for the JVM being used to run Pamguard i.e. how much memory it gets to
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use. The default max size usually being too low.</p>
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<p class=MsoNormal>The -Djava.library.path=lib64 tells the JVM that it should
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look in the folder called "lib64" for the required shared libraries (change
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@ -381,8 +381,8 @@ a "-m" or "-v" to the list of java arguments. On Windows
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just run the appropriately named executable (e.g. PamguardBeta_MixedMode.exe or
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PamguardBeta_ViewerMode.exe):</p>
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<p class=MsoNormal><em><span style='font-family:"Calibri",sans-serif'>java
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-Xms384m -Xmx4096m -Djava.library.path=lib64 -jar PamguardBeta_xxxxxx.jar -v</span></em></p>
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<p class=MsoNormal><em><span style='font-family:"Calibri",sans-serif'>java -Xms384m
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-Xmx4096m -Djava.library.path=lib64 -jar PamguardBeta_xxxxxx.jar -v</span></em></p>
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<p class=MsoNormal><em><span style='font-family:"Calibri",sans-serif'> </span></em></p>
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@ -444,7 +444,26 @@ Version 2.00.10 June 2017</a></span></h1>
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<h1><span style='font-size:12.0pt'><a href="#_Older_Versions">Older Versions</a></span></h1>
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<h1><a name="_Latest_Version_2.02.03_1"></a><a name="_Latest_Version_2.02.05"></a><span
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lang=EN-US>Latest Version 2.02.05 October 2022</span></h1>
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lang=EN-US>Latest Version 2.02.06 November 2022</span></h1>
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<h2><span lang=EN-US>Bug Fix</span></h2>
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<p class=MsoNormal><span lang=EN-US>A memory leak has been found which seems to
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mostly occur in Viewer mode. Some data on background noise measurements are not
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being cleared from memory, so memory will eventually run out. This could happen
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after browsing a lot of data, but was most likely when reprocessing files
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offline, for example running click classifiers. This is now fixed. </span></p>
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<h2><span lang=EN-US>New Features</span></h2>
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<p class=MsoNormal><span lang=EN-US>SoundTrap SUD file reading. If you’re using
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SoundTrap autonomous recorders from Ocean Instruments, you no longer need to decompress
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the SoundTrap files prior to processing. This will save time and a lot of disk
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space. Extraction of clicks from the inbuilt SoundTrap Click detector an also
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happen while processing SUD file data with other detectors, thereby
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streamlining the whole processing chain. Read the online Help for details. </span></p>
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<h1><span lang=EN-US>Latest Version 2.02.05 October 2022</span></h1>
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<h2><span lang=EN-US>Click Train Detector Features and Bug Fixes</span></h2>
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@ -452,8 +471,9 @@ lang=EN-US>Latest Version 2.02.05 October 2022</span></h1>
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<p class=MsoNormal><span lang=EN-US>Changes to GUI to make dialog shorter for
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low DPI screens. </span></p>
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<p class=MsoNormal><span lang=EN-US>Complete rewrite of the classification
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system to have nested classifiers which can be enabled or disabled. </span></p>
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<p class=MsoNormal><span lang=EN-US>Complete rewrite of the classification system
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to have nested classifiers which can be enabled or disabled. </span></p>
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<p class=MsoNormal><span lang=EN-US>Changes to classification GUI to
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accommodate the new classification system.</span></p>
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@ -498,9 +518,9 @@ audio files. </span></p>
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<h2><span lang=EN-US>Bug Fixes</span></h2>
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<p class=MsoNormal><span lang=EN-US>Soundtrap DWV import. Will now generate binary
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files even if DWV file doesnt exist (which is correct behavior in quiet
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conditions when no clicks were detected). </span></p>
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<p class=MsoNormal><span lang=EN-US>Soundtrap DWV import. Will now generate
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binary files even if DWV file doesnÂ’t exist (which is correct behavior in
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quiet conditions when no clicks were detected). </span></p>
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<p class=MsoNormal><span lang=EN-US>Spectrogram. Changes to stop occasional
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crashing when restarting processing of wav files. </span></p>
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@ -534,8 +554,8 @@ running in real time. Added template names based on file names. </p>
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<p class=MsoNormal>#13 Merging files when offline processing file folders: Had
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an error introduced in last release which caused it to fail to recognise gaps
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between files, meaning that some output data (i.e. after a gap) would have an
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incorrect time stamp. This did not affect data if the Âmerge contiguous filesÂ
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option was not selected. </p>
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incorrect time stamp. This did not affect data if the ‘merge contiguous
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files’ option was not selected. </p>
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<p class=MsoNormal>#14 Logger forms data were not plotting correctly. This was
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due to the required data selection functions not being fully implemented. This
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@ -574,23 +594,23 @@ understand the notes listed for <a href="#_Latest_Beta_Version_2.00.10">Beta
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Version 2.00.10</a> before proceeding with installation and use of this
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version.</b></p>
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<p class=MsoNormal>This version of PAMGuard has been bundled with Java 16
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(OpenJDK release), so you will not need to install a java runtime engine
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separately. PSFX files generated in previous beta releases (2.xx.xx) should be
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compatible with this version, and vice-versa. PSF files generated in core
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releases (1.15.xx) can be loaded in this version, but will be converted to PSFX
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files when PAMGuard exits.</p>
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<p class=MsoNormal>This version of PAMGuard has been bundled with Java 16 (OpenJDK
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release), so you will not need to install a java runtime engine separately.
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PSFX files generated in previous beta releases (2.xx.xx) should be compatible
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with this version, and vice-versa. PSF files generated in core releases
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(1.15.xx) can be loaded in this version, but will be converted to PSFX files
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when PAMGuard exits.</p>
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<p class=MsoNormal style='margin-bottom:0cm'><span style='font-size:12.0pt;
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font-family:"Times New Roman",serif'> </span></p>
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<h2>File Format Change</h2>
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<p class=MsoNormal>Changes have been made to the binary file format to support
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the output of additional noise outputs for certain detectors (See below).
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Binary files created with this version will not be compatible with earlier
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versions 2.01.### and below. This version will read and may convert earlier
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format binary files.</p>
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<p class=MsoNormal>Changes have been made to the binary file format to support the
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output of additional noise outputs for certain detectors (See below). Binary
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files created with this version will not be compatible with earlier versions
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2.01.### and below. This version will read and may convert earlier format
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binary files.</p>
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<p class=MsoNormal style='margin-bottom:0cm'><span style='font-size:12.0pt;
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font-family:"Times New Roman",serif'> </span></p>
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@ -608,10 +628,10 @@ href="http://www.pamguard.org/downloads.php?cat_id=3">here</a>.</p>
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<p class=MsoNormal><b><span lang=EN-US>Detection Group Localiser</span></b><span
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lang=EN-US> </span></p>
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<p class=MsoNormal>This module has been renamed ÂDetection GrouperÂ, so as to
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avoid confusion with the Group 3D localizer. This is because the Detection
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Grouper is more for organizing data into groups to be localized than it is for
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doing localization.</p>
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<p class=MsoNormal>This module has been renamed “Detection Grouper”, so
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as to avoid confusion with the Group 3D localizer. This is because the
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Detection Grouper is more for organizing data into groups to be localized than
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it is for doing localization.</p>
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<p class=MsoNormal><b><span lang=EN-US>Minor Bug Fixes</span></b><span
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lang=EN-US> </span></p>
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@ -729,10 +749,10 @@ included in a future release. </p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>17. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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An implementation of the Generalized Power Law Detector, developed by Tyler
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Helble ([Helble et al., ÂA generalized power-law detection algorithm for humpback
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whale vocalizationsÂ, The Journal of the Acoustical Society of America, vol.
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131, no. 4, pp. 2682Â2699, 2012) is now available. For details, see the online
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help </p>
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Helble ([Helble et al., ‘A generalized power-law detection algorithm for
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humpback whale vocalizations’, The Journal of the Acoustical Society of
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America, vol. 131, no. 4, pp. 2682–2699, 2012) is now available. For
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details, see the online help </p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>18. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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@ -754,10 +774,10 @@ Version 2.00.10</a> before proceeding with installation and use of this
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version.</b></p>
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<p class=MsoNormal>This version of PAMGuard has been bundled with Java 13
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(release 13.0.1). PSFX files generated in previous beta releases (2.xx.xx) should
|
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be compatible with this version, and vice-versa. PSF files generated in core
|
||||
releases (1.15.xx) can be loaded in this version, but will be converted to PSFX
|
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files when PAMGuard exits.</p>
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(release 13.0.1). PSFX files generated in previous beta releases (2.xx.xx)
|
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should be compatible with this version, and vice-versa. PSF files generated in
|
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core releases (1.15.xx) can be loaded in this version, but will be converted to
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PSFX files when PAMGuard exits.</p>
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<p class=MsoNormal><b><span lang=EN-US>Bug Fixes</span></b></p>
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@ -840,8 +860,8 @@ lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> &nb
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Added logger form annotation to Spectrogram Annotation module. </p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>6. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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Better auto-scaling in Ishmael Detector graphics window. </p>
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
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lang=EN-US> </span>Better auto-scaling in Ishmael Detector graphics window. </p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>7. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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@ -968,8 +988,8 @@ lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> &nb
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<p class=MsoNormal><b><span lang=EN-US>Upgrades</span></b></p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>1. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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Add functionality for bluetooth headsets. </p>
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
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lang=EN-US> </span>Add functionality for bluetooth headsets. </p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
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@ -1093,9 +1113,9 @@ lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> &nb
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Bug 441. Plot coordinate calculations incorrect in PamAxis.</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>10. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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Bug 442. BT Display does not change click symbol color when Colour By
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Superdetection is selected.</p>
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
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lang=EN-US> </span>Bug 442. BT Display does not change click symbol color when
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Colour By Superdetection is selected.</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>11. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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@ -1108,8 +1128,8 @@ files.</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>13. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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Bug 445. Overlay data in FX spectrogram display gets out of sync with underlying
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spectrogram image.</p>
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Bug 445. Overlay data in FX spectrogram display gets out of sync with
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underlying spectrogram image.</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>14. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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@ -1182,9 +1202,9 @@ lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> &nb
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Added a few new options to the Click Detector Sweep Classifier. </p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>10. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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Add option to the Map module's Plot Overlay Options dialog, to show events
|
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occuring in the future (<em><span style='font-family:"Calibri",sans-serif'>look
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
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lang=EN-US> </span>Add option to the Map module's Plot Overlay Options dialog,
|
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to show events occuring in the future (<em><span style='font-family:"Calibri",sans-serif'>look
|
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ahead</span></em>) instead of the default display of events which have already
|
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occurred. Can make it easier to match up the map with clicks seen in the Click
|
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Detector display. </p>
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@ -1234,8 +1254,9 @@ lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> &nb
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Bug 429. Click Bearings at 180 degrees</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>4. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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Bug 430. Rocca calculates inflection point parameters incorrectly</p>
|
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
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lang=EN-US> </span>Bug 430. Rocca calculates inflection point parameters
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incorrectly</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>5. </span><span
|
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
|
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@ -1249,8 +1270,8 @@ Bug 432. MySQL database interface - connection problems</p>
|
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<p class=MsoNormal><b><span lang=EN-US>Upgrades</span></b></p>
|
||||
|
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>1. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
|
||||
New display for Gebco Netcdf bathymetry maps.</p>
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
|
||||
lang=EN-US> </span>New display for Gebco Netcdf bathymetry maps.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
|
||||
@ -1331,8 +1352,8 @@ files.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>12. </span><span
|
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Bug 425. Rocca crashing if Click Detector is used as source but the
|
||||
Click Classifier is not configured properly.</p>
|
||||
</span>Bug 425. Rocca crashing if Click Detector is used as source but the Click
|
||||
Classifier is not configured properly.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>13. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -1346,9 +1367,9 @@ lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> &nb
|
||||
Upgrades to the Group Localiser, including better error estimation.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
|
||||
Click Train Detector upgrades, including ability to import time chunks from csv
|
||||
file for batch processing.</p>
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
|
||||
lang=EN-US> </span>Click Train Detector upgrades, including ability to import
|
||||
time chunks from csv file for batch processing.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>3. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
|
||||
@ -1475,14 +1496,14 @@ lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> &nb
|
||||
Updates to the Ishmael module.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>9. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
|
||||
Added option to the WarnOnce dialog to hide a warning for the current PAMGuard
|
||||
session, but not forever.</p>
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
|
||||
lang=EN-US> </span>Added option to the WarnOnce dialog to hide a warning for
|
||||
the current PAMGuard session, but not forever.</p>
|
||||
|
||||
<!-- ************************************************************************************************************************** --><!-- ************************************************************************************************************************** -->
|
||||
|
||||
<h1><a name="_Latest_Beta_Version_2.00.14c"></a><span lang=EN-US>Beta Version 2.00.14c
|
||||
October 2018</span></h1>
|
||||
<h1><a name="_Latest_Beta_Version_2.00.14c"></a><span lang=EN-US>Beta Version
|
||||
2.00.14c October 2018</span></h1>
|
||||
|
||||
<p class=MsoNormal><span lang=EN-US>PAMGuard Version 2 contains major updates.
|
||||
You should read and understand the notes listed for <a
|
||||
@ -1518,10 +1539,10 @@ lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> &nb
|
||||
lang=EN-US> </span>Added decimal degrees option to latitude/longitude dialog.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
|
||||
Added option in the Click Delay parameters to restrict the number of initial
|
||||
samples used in the calculation. This can be useful for cleaning up delays in
|
||||
the presence of echoes and small time delays.</p>
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
|
||||
lang=EN-US> </span>Added option in the Click Delay parameters to restrict the
|
||||
number of initial samples used in the calculation. This can be useful for
|
||||
cleaning up delays in the presence of echoes and small time delays.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>3. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
|
||||
@ -1589,7 +1610,8 @@ Annotation module which has now been given two text type annotations.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>9. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Bug 391. Click Detector not registering change in multi-threading option.</p>
|
||||
</span>Bug 391. Click Detector not registering change in multi-threading
|
||||
option.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>10. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -1632,11 +1654,11 @@ lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> &nb
|
||||
lang=EN-US> </span>Added ability to read differential GPS data.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>5. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
|
||||
Added check for duplicate settings in the psf file when exiting Pamguard. If
|
||||
duplicate settings are found, user is given the option to leave them in the psf
|
||||
or get rid of them. Duplicate settings are ignored by Pamguard, but can cause
|
||||
the psf file to grow large over time.</p>
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
|
||||
lang=EN-US> </span>Added check for duplicate settings in the psf file when
|
||||
exiting Pamguard. If duplicate settings are found, user is given the option to
|
||||
leave them in the psf or get rid of them. Duplicate settings are ignored by
|
||||
Pamguard, but can cause the psf file to grow large over time.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>6. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
|
||||
@ -1704,8 +1726,8 @@ lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> &nb
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>10. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Bug 376. Error when using a serialised data map which spans a period of time
|
||||
in which Pamguard modules have changed.</p>
|
||||
</span>Bug 376. Error when using a serialised data map which spans a period of
|
||||
time in which Pamguard modules have changed.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>11. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -1744,8 +1766,9 @@ used in older versions. Older psf files can be loaded with this version, but
|
||||
will be converted.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>4. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
|
||||
Many updates to the Video Range module. Will currently only work with landmarks.</p>
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
|
||||
lang=EN-US> </span>Many updates to the Video Range module. Will currently only
|
||||
work with landmarks.</p>
|
||||
|
||||
<!-- ************************************************************************************************************************** -->
|
||||
|
||||
@ -1808,8 +1831,8 @@ Beta versions</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>11. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Bug 366. Rocca manual whistle contour extraction throws error when trying
|
||||
to classify a boxed whistle</p>
|
||||
</span>Bug 366. Rocca manual whistle contour extraction throws error when
|
||||
trying to classify a boxed whistle</p>
|
||||
|
||||
<p class=MsoNormal><b><span lang=EN-US>Upgrades</span></b></p>
|
||||
|
||||
@ -1878,8 +1901,8 @@ lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> &nb
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>10.</span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Bug 354. Whistle Classifier was crashing if user accidentally entered invalid
|
||||
parameters. Have added diagnostics to prevent this.</p>
|
||||
</span>Bug 354. Whistle Classifier was crashing if user accidentally entered
|
||||
invalid parameters. Have added diagnostics to prevent this.</p>
|
||||
|
||||
<p class=MsoNormal><b><span lang=EN-US>Upgrades</span></b></p>
|
||||
|
||||
@ -2009,8 +2032,8 @@ C:\MySurvey\binarydata_WithUID. </span></p>
|
||||
|
||||
<p class=MsoNormal><span lang=EN-US>The additional UID column will be added to
|
||||
all database tables and populated with unique values. For data which are stored
|
||||
in both the binary files and in database tables, the same UIDÂs will be used in
|
||||
both data stores. </span></p>
|
||||
in both the binary files and in database tables, the same UID’s will be used
|
||||
in both data stores. </span></p>
|
||||
|
||||
<h3><span lang=EN-US>New Displays</span></h3>
|
||||
|
||||
@ -2024,11 +2047,11 @@ Note that this display is only available if you are running Java 8 or later. </s
|
||||
|
||||
<h3><span lang=EN-US>Event Marking and the Detection Group Localiser</span></h3>
|
||||
|
||||
<p class=MsoNormal><span lang=EN-US>A new system of event marking which can be used
|
||||
both online and offline has been added to PAMGuard. Details are in the PAMGuard
|
||||
help file (Displays/Display Marking). Data can be selected on the Map, the
|
||||
Spectrogram Display and the new Time Display FX in a similar way and sent to
|
||||
other PAMGuard modules. The new marking and data selection system works with
|
||||
<p class=MsoNormal><span lang=EN-US>A new system of event marking which can be
|
||||
used both online and offline has been added to PAMGuard. Details are in the
|
||||
PAMGuard help file (Displays/Display Marking). Data can be selected on the Map,
|
||||
the Spectrogram Display and the new Time Display FX in a similar way and sent
|
||||
to other PAMGuard modules. The new marking and data selection system works with
|
||||
the new Detection Group Localiser. The Detection Group Localiser extends the
|
||||
functionality which always existed in the click detector to other types of data
|
||||
(e.g. Whistles) so that they can be grouped and tracked using target motion
|
||||
@ -2146,15 +2169,15 @@ working folder, and therefore is set incorrectly. This has been fixed.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>5.</span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Bug 314. If PAMGuard is started by double-clicking on a psf, nothing
|
||||
happens when the user selects save as new configuration. This has been fixed.</p>
|
||||
</span>Bug 314. If PAMGuard is started by double-clicking on a psf, nothing happens
|
||||
when the user selects save as new configuration. This has been fixed.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>6.</span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Bug 315. code searched for file in working folder, which is the
|
||||
installation folder when starting PAMGuard using a shortcut link. But when
|
||||
double-clicking on a psf, the working folder is the location of the psf. This has
|
||||
been fixed.</p>
|
||||
double-clicking on a psf, the working folder is the location of the psf. This
|
||||
has been fixed.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>7.</span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
|
||||
@ -2183,8 +2206,8 @@ jar file will be required rather than a new bespoke PAMGuard installation.</span
|
||||
|
||||
<p class=MsoNormal><span lang=EN-US>Module code development remains largely
|
||||
unchanged, in most cases simply requiring the addition of an interface class.
|
||||
Instructions for the development of new modules utilizing the plug-in scheme
|
||||
can be found <a href="http://www.pamguard.org/16_HowtomakePlug-Ins.html"
|
||||
Instructions for the development of new modules utilizing the plug-in
|
||||
scheme can be found <a href="http://www.pamguard.org/16_HowtomakePlug-Ins.html"
|
||||
target="_blank">here</a>. Plug-in modules can be downloaded from the
|
||||
PAMGuard website here, but developers are encouraged to host and maintain their
|
||||
own modules.</span></p>
|
||||
@ -2192,8 +2215,8 @@ own modules.</span></p>
|
||||
<p class=MsoNormal><span lang=EN-US>Modules of interest to the general PAM
|
||||
community will remain as part of the core PAMGuard installation. However,
|
||||
specialized modules which are useful to only a small number of users have been
|
||||
removed and are available as a separate download. The following modules have been
|
||||
removed:</span></p>
|
||||
removed and are available as a separate download. The following modules have
|
||||
been removed:</span></p>
|
||||
|
||||
<p class=MsoListParagraph style='margin-left:43.5pt;text-indent:-25.5pt'>1.<span
|
||||
style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -2244,19 +2267,19 @@ November 2016</span></h1>
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>1.
|
||||
Bug 303. Some ASIO sound cards not working with either ASIO system in PAMGuard.
|
||||
For the PAMGuard ASIO system, this was due to a data format used by some sound
|
||||
cards never being properly implemented. For the ÂNew ASIO system which is
|
||||
based on jAsioHost, the unpacking of that format contained a bug which returned
|
||||
incorrect numbers, so data were swamped with noise. Both systems are now fixed.
|
||||
By preference, users should use the PAMGuard ASIO system since the JAsioHost
|
||||
based system seems to drop samples when many channels are running at high
|
||||
sample rate. </span></p>
|
||||
cards never being properly implemented. For the “New ASIO system” which
|
||||
is based on jAsioHost, the unpacking of that format contained a bug which
|
||||
returned incorrect numbers, so data were swamped with noise. Both systems are
|
||||
now fixed. By preference, users should use the PAMGuard ASIO system since the
|
||||
JAsioHost based system seems to drop samples when many channels are running at
|
||||
high sample rate. </span></p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'>2.<span style='font-size-adjust: none;
|
||||
font-stretch: normal'><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span></span><span lang=EN-US>Bug 305. Date and Time not being correctly
|
||||
extracted from wav files created using SoundTrap recorders. Fixed by correctly
|
||||
finding and unpacking information in the accompanying xml log files that come with
|
||||
SoundTrap files. </span></p>
|
||||
finding and unpacking information in the accompanying xml log files that come
|
||||
with SoundTrap files. </span></p>
|
||||
|
||||
<h1><a name="_Latest_Version_1.15.06"></a><span lang=EN-US>Version 1.15.06
|
||||
November 2016</span></h1>
|
||||
@ -2290,8 +2313,8 @@ data for the least square model. Both fixed. </p>
|
||||
|
||||
<p class=MsoListParagraph style='margin-left:40.5pt;text-indent:-22.5pt'>4.<span
|
||||
style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Bug 294. Click classifier was crashing when the 'min amplitude' option
|
||||
was used. This is fixed. </p>
|
||||
</span>Bug 294. Click classifier was crashing when the 'min amplitude' option was
|
||||
used. This is fixed. </p>
|
||||
|
||||
<p class=MsoListParagraph style='margin-left:40.5pt;text-indent:-22.5pt'>5.<span
|
||||
style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -2375,9 +2398,9 @@ the database. </span></p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2.</span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span><span lang=EN-US>The number of data streams associated with the click detector
|
||||
has been tidied up so that there are a) All Click, b) Tracked Clicks (those
|
||||
which are part of an event) and c) Events. </span></p>
|
||||
</span><span lang=EN-US>The number of data streams associated with the click
|
||||
detector has been tidied up so that there are a) All Click, b) Tracked Clicks
|
||||
(those which are part of an event) and c) Events. </span></p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>3.</span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -2393,9 +2416,9 @@ automatic click train identification and tracking. </span></p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>5.</span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span><span lang=EN-US>The automatic click train identification is now using the
|
||||
same internal structures as the manual tracking, so it's possible to combine
|
||||
automatic and manual tracking. </span></p>
|
||||
</span><span lang=EN-US>The automatic click train identification is now using
|
||||
the same internal structures as the manual tracking, so it's possible to
|
||||
combine automatic and manual tracking. </span></p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>6.</span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -2475,8 +2498,9 @@ today. </p>
|
||||
|
||||
<p class=MsoListParagraph style='margin-left:38.25pt;text-indent:-20.25pt'>5.<span
|
||||
style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Bug 277. Text fields in classifier dialog were not large enough to display
|
||||
times greater than 10ms. We have increased length of text fields in the dialog.</p>
|
||||
</span>Bug 277. Text fields in classifier dialog were not large enough to
|
||||
display times greater than 10ms. We have increased length of text fields in the
|
||||
dialog.</p>
|
||||
|
||||
<p class=MsoListParagraph style='margin-left:38.25pt;text-indent:-20.25pt'>6.<span
|
||||
style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -2494,8 +2518,8 @@ style='font-size:7.0pt;font-family:"Times New Roman",serif'> &n
|
||||
</span>Bug 279. GUI Resizing: The whole PAMGuard GUI would suddenly resize to
|
||||
something very small when a dialog is opened. This has been traced to improper
|
||||
use of a common dialog component SourcePanel which tries to repack its parent
|
||||
Window. Some programmers had inadvertently set it to repack the main PAMGuard GUI
|
||||
instead. This has been Fixed.</p>
|
||||
Window. Some programmers had inadvertently set it to repack the main PAMGuard
|
||||
GUI instead. This has been Fixed.</p>
|
||||
|
||||
<p class=MsoListParagraph style='margin-left:38.25pt;text-indent:-20.25pt'>8.<span
|
||||
style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -2569,8 +2593,8 @@ and datagram creation.</p>
|
||||
|
||||
<h1><a name="_Toc444450394"></a><span lang=EN-US>Version 1.15.00 February 2016</span></h1>
|
||||
|
||||
<p class=MsoNormal><span lang=EN-US>Beta Version 1.15.00 64 bit and Core version
|
||||
1.15.00 32 bit. Both using identical Java core software but linking to
|
||||
<p class=MsoNormal><span lang=EN-US>Beta Version 1.15.00 64 bit and Core
|
||||
version 1.15.00 32 bit. Both using identical Java core software but linking to
|
||||
different libraries for control of sound input devices. </span></p>
|
||||
|
||||
<p class=MsoNormal><span lang=EN-US>This is the first release of a 64 bit
|
||||
@ -2638,12 +2662,12 @@ boundaries when file durations are set to a maximum fixed value. </p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>5.</span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Bug 262. Access to SQLite database conversion. This would fail when tables
|
||||
were present which were not created by PAMGuard. Fixes have been put in
|
||||
place for spaces in the table name or for not having an 'Id' column. Fixes have
|
||||
not been implemented for spaces in a column name or use of a reserved word as a
|
||||
column name, however if either of these problems do exist it will no longer
|
||||
crash but issue a clear warning and carry onto the next table.</p>
|
||||
</span>Bug 262. Access to SQLite database conversion. This would fail when
|
||||
tables were present which were not created by PAMGuard. Fixes have been
|
||||
put in place for spaces in the table name or for not having an 'Id' column.
|
||||
Fixes have not been implemented for spaces in a column name or use of a
|
||||
reserved word as a column name, however if either of these problems do exist it
|
||||
will no longer crash but issue a clear warning and carry onto the next table.</p>
|
||||
|
||||
<p class=MsoNormal style='margin-left:18.0pt'><span lang=EN-US> </span></p>
|
||||
|
||||
@ -2878,8 +2902,8 @@ minutes and seconds. Now correctly displays the number of remaining days. </p>
|
||||
|
||||
<p class=MsoListParagraph style='margin-left:47.25pt;text-indent:-29.25pt'><span
|
||||
lang=EN-US>4.</span><span lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Bug 226. Spectrogram Mark Observer list doesn't refresh when modules added
|
||||
or removed. </p>
|
||||
</span>Bug 226. Spectrogram Mark Observer list doesn't refresh when modules
|
||||
added or removed. </p>
|
||||
|
||||
<p class=MsoListParagraph style='margin-left:47.25pt;text-indent:-29.25pt'><span
|
||||
lang=EN-US>5.</span><span lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -3049,12 +3073,11 @@ sonobuoys. See online help for details. </p>
|
||||
|
||||
<p class=MsoNormal><i>MEAL Localiser</i> (Localisation Group)</p>
|
||||
|
||||
<p class=MsoNormal>This module, developed by Jamie Macaulay of St Andrews
|
||||
University estimates the 3D localisation of clicks using a variety of
|
||||
algorithms. It's primarily been developed to track harbour porpoise in three
|
||||
dimensions over scales of 10's of metres. While currently only working with
|
||||
output from the click detector, we hope eventually to extend its use to
|
||||
whistles as well. </p>
|
||||
<p class=MsoNormal>This module, developed by Jamie Macaulay of St Andrews University
|
||||
estimates the 3D localisation of clicks using a variety of algorithms. It's
|
||||
primarily been developed to track harbour porpoise in three dimensions over
|
||||
scales of 10's of metres. While currently only working with output from the
|
||||
click detector, we hope eventually to extend its use to whistles as well. </p>
|
||||
|
||||
<p class=MsoNormal><i>Accelerometer Readout</i> (Sensors group)</p>
|
||||
|
||||
@ -3072,12 +3095,12 @@ marine mammal survey package. See online help for details. </p>
|
||||
|
||||
<p class=MsoNormal><i>Alarms</i> (Utilities Group)</p>
|
||||
|
||||
<p class=MsoNormal>This is a general system of visual and audio alarms developed
|
||||
by Doug Gillespie for use on a variety of projects. The alarms can be coupled
|
||||
to any module or detector in PAMGuard. Where appropriate, modules can control
|
||||
which of their data will cause an alarm action (e.g. in the Click detector you
|
||||
can set which types of classified click will fire the alarm). See online help
|
||||
for details. </p>
|
||||
<p class=MsoNormal>This is a general system of visual and audio alarms
|
||||
developed by Doug Gillespie for use on a variety of projects. The alarms can be
|
||||
coupled to any module or detector in PAMGuard. Where appropriate, modules can
|
||||
control which of their data will cause an alarm action (e.g. in the Click
|
||||
detector you can set which types of classified click will fire the alarm). See
|
||||
online help for details. </p>
|
||||
|
||||
<p class=MsoNormal><i>Noise Band Monitor</i> (Sound Processing Group)</p>
|
||||
|
||||
@ -3141,8 +3164,8 @@ Millisecond time is also now included in the output file names. </p>
|
||||
|
||||
<p class=MsoNormal>Datagram options in Viewer have been improved so that the
|
||||
user has to verify the time binning for datagrams the first time the viewer is
|
||||
run and can also change the time bins from the File menu (See the File/BinaryStore/Datagram
|
||||
options menu. </p>
|
||||
run and can also change the time bins from the File menu (See the
|
||||
File/BinaryStore/Datagram options menu. </p>
|
||||
|
||||
<p class=MsoNormal><i>Viewer Configuration</i></p>
|
||||
|
||||
@ -3164,8 +3187,8 @@ horizon. </p>
|
||||
|
||||
<p class=MsoNormal><i>Improved Filter Options</i></p>
|
||||
|
||||
<p class=MsoNormal>Filter options (used as stand-alone filter modules and also
|
||||
within many other modules, such as the click detector and the Filtered Noise
|
||||
<p class=MsoNormal>Filter options (used as stand-alone filter modules and also within
|
||||
many other modules, such as the click detector and the Filtered Noise
|
||||
Measurement module) have been improved so that the user can specify arbitrarily
|
||||
shaped Finite Impulse Response filters (see online help for details). </p>
|
||||
|
||||
@ -3275,9 +3298,9 @@ other data sources for the PAMGuard viewer. </p>
|
||||
|
||||
<p class=MsoNormal style='margin-left:36.0pt'><i>Database</i></p>
|
||||
|
||||
<p class=MsoNormal style='margin-left:36.0pt'>Can now copy data from binary storage
|
||||
to the database offline for any module having both binary and database storage.
|
||||
</p>
|
||||
<p class=MsoNormal style='margin-left:36.0pt'>Can now copy data from binary
|
||||
storage to the database offline for any module having both binary and database
|
||||
storage. </p>
|
||||
|
||||
<p class=MsoNormal style='margin-left:36.0pt'>Can create a blank MS Access
|
||||
database (2007 and later *.accdb formats only).</p>
|
||||
@ -3376,8 +3399,8 @@ elements has been fixed. </p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Database Speed: A substantial rewriting of some of the indexing methods in
|
||||
the database module has led to a significant increase in the speed at which
|
||||
</span>Database Speed: A substantial rewriting of some of the indexing methods
|
||||
in the database module has led to a significant increase in the speed at which
|
||||
data are written to the database (orders of magnitude for large databases).
|
||||
This is having a significant impact on the overall reliability of the software.
|
||||
Other changes have increased the speed (again by orders of magnitude) at which
|
||||
@ -3469,9 +3492,9 @@ Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Offline event marking. Offline event marking similar to functionality in
|
||||
RainbowClick is now available in the PAMGUARD viewer. Event summary data is stored
|
||||
in the database and can also be exported to text files (e.g. for importing into
|
||||
the Distance software). </p>
|
||||
RainbowClick is now available in the PAMGUARD viewer. Event summary data is
|
||||
stored in the database and can also be exported to text files (e.g. for
|
||||
importing into the Distance software). </p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -3506,8 +3529,8 @@ features of the display:</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>The spectrogram will automatically generate and display spectrogram
|
||||
data. </p>
|
||||
</span>The spectrogram will automatically generate and display spectrogram data.
|
||||
</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -3578,8 +3601,8 @@ the correct data stream. This has been fixed. </p>
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Whistle classifier has some new features in the classifier training
|
||||
panel. It is also now possible to export training data files directly from binary
|
||||
data files. </p>
|
||||
panel. It is also now possible to export training data files directly from
|
||||
binary data files. </p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -3618,10 +3641,10 @@ Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif
|
||||
|
||||
<p class=MsoNormal>2. Improved offline viewer functionality. </p>
|
||||
|
||||
<p class=MsoNormal>The offline viewer is much improved with better data scrolling
|
||||
and the ability to view data either stored in the database or the binary
|
||||
storage system. Work has stated on functions which read and use data stored in
|
||||
audio files. This is currently limited to re-calculating and displaying
|
||||
<p class=MsoNormal>The offline viewer is much improved with better data
|
||||
scrolling and the ability to view data either stored in the database or the
|
||||
binary storage system. Work has stated on functions which read and use data
|
||||
stored in audio files. This is currently limited to re-calculating and displaying
|
||||
displaying spectrogram data during viewer mode operation. </p>
|
||||
|
||||
<p class=MsoNormal>3. Heading sensor readout</p>
|
||||
@ -3696,14 +3719,14 @@ lookup tables relating hardware channel numbers to internal channel numbers.
|
||||
0 and 1 from a normal sound card or a list of channels 0,1,2,3, etc from an
|
||||
ASIO card or National Instruments card. However, when using the ASIO sound
|
||||
acquisition system, it is possible to read out hardware channels 2,3,4,5 say
|
||||
and those numbers would propagate through PAMGUARD and be used by all the
|
||||
detectors. While this gave some clarity to the displays, it also created
|
||||
a number of problems since look up tables were constantly required to relate
|
||||
hardware numbers and software numbers in every PAMGUARD module. Since this type
|
||||
of channel numbering was only implemented several years into the PAMGUARD
|
||||
project, it was never fully implemented or well supported by the different
|
||||
modules which resulted in a number of bugs which could cause confusion as to
|
||||
which hydrophones were being used during localisation or during calibrated
|
||||
and those numbers would propagate through PAMGUARD and be used by all the detectors.
|
||||
While this gave some clarity to the displays, it also created a number of
|
||||
problems since look up tables were constantly required to relate hardware
|
||||
numbers and software numbers in every PAMGUARD module. Since this type of
|
||||
channel numbering was only implemented several years into the PAMGUARD project,
|
||||
it was never fully implemented or well supported by the different modules which
|
||||
resulted in a number of bugs which could cause confusion as to which
|
||||
hydrophones were being used during localisation or during calibrated
|
||||
measurement. The situation tended to only arise with a small number of ASIO
|
||||
sound cards such as the RME Fireface 400 on which the most useful inputs, the
|
||||
balanced line inputs, are hardware channels 4,5,6 and 7 on the back of the
|
||||
@ -3718,10 +3741,10 @@ re-label those channels 0,1,2,3. </p>
|
||||
<p class=MsoNormal>There have been other annoyances with the ASIO channel
|
||||
numbering scheme. For instance, if you had a configuration which worked in real
|
||||
time using channels 7 and 8 of a sound card, you could not use that same
|
||||
configuration to analyse wav files, which would always read their data as
|
||||
channels 0 and 1. Similarly if you switched sound cards, you may have to
|
||||
reconfigure every detector and several of the displays to handle the changes in
|
||||
channel numbering. </p>
|
||||
configuration to analyse wav files, which would always read their data as channels
|
||||
0 and 1. Similarly if you switched sound cards, you may have to reconfigure
|
||||
every detector and several of the displays to handle the changes in channel
|
||||
numbering. </p>
|
||||
|
||||
<p class=MsoNormal>I have spent a considerable amount of time trying to work
|
||||
out a better system for handling channel numbering in PAMGUARD and have decided
|
||||
@ -3832,10 +3855,10 @@ port is closed. Might prevent a few problems when using a GPS. </p>
|
||||
<p class=MsoNormal>Crashes caused in real time or Mixed Mode if the number of
|
||||
software channels exceeds the number of hydrophones configured in the array
|
||||
manager. It is of course illogical to have software channels which are not
|
||||
assigned to a hydrophone, so rather than entirely prevent PAMGUARD from crashing
|
||||
I have inserted additional checks into the hydrophone array dialog which will
|
||||
prevent the user from closing that dialog unless all software channels are
|
||||
assigned to a hydrophone. </p>
|
||||
assigned to a hydrophone, so rather than entirely prevent PAMGUARD from
|
||||
crashing I have inserted additional checks into the hydrophone array dialog
|
||||
which will prevent the user from closing that dialog unless all software
|
||||
channels are assigned to a hydrophone. </p>
|
||||
|
||||
<h2><span style='font-weight:normal'>Version 1.8.01 Beta February 2010</span></h2>
|
||||
|
||||
@ -3917,10 +3940,10 @@ synchronisation.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Wigner time-frequency plot for the click detector. Clicks are NOT
|
||||
automatically displayed in the Winger window as they are for the waveform and
|
||||
spectrum windows since the Wigner transformation is very time consuming. Clicks
|
||||
will be displayed if you select them with the mouse.</p>
|
||||
</span>Wigner time-frequency plot for the click detector. Clicks are NOT automatically
|
||||
displayed in the Winger window as they are for the waveform and spectrum
|
||||
windows since the Wigner transformation is very time consuming. Clicks will be
|
||||
displayed if you select them with the mouse.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -3932,15 +3955,15 @@ classifier is still available). </p>
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Bearing ambiguity resolution for planar and volumetric arrays. New
|
||||
features in array dialog for estimations of errors on array location. These
|
||||
feed into to a maximum likelihood estimate of angles from small 2D or 3D sub arrays
|
||||
to give two polar angle coordinates. this can be used to resolve left right
|
||||
ambiguity and is implemented for both the click and the whistle/moan detectors.
|
||||
As a result, the click detector bearing time display can now be set to go from
|
||||
-180 to 180 degrees rather than 0 - 180 degrees. In this case, clicks in the
|
||||
upper half of the bearing display will be to port and clicks in the right half
|
||||
will be to starboard. As you pass a whale which is to port, the clicks will
|
||||
move UP the display. In the long term, I hope to turn this display around so
|
||||
that time is up the screen rather than across. </p>
|
||||
feed into to a maximum likelihood estimate of angles from small 2D or 3D sub
|
||||
arrays to give two polar angle coordinates. this can be used to resolve left
|
||||
right ambiguity and is implemented for both the click and the whistle/moan
|
||||
detectors. As a result, the click detector bearing time display can now be set
|
||||
to go from -180 to 180 degrees rather than 0 - 180 degrees. In this case,
|
||||
clicks in the upper half of the bearing display will be to port and clicks in
|
||||
the right half will be to starboard. As you pass a whale which is to port, the
|
||||
clicks will move UP the display. In the long term, I hope to turn this display
|
||||
around so that time is up the screen rather than across. </p>
|
||||
|
||||
<p class=MsoNormal><b>Small features and bug fixes</b></p>
|
||||
|
||||
@ -4135,10 +4158,10 @@ help pages</p>
|
||||
|
||||
<p class=MsoNormal><b>Bug Fixes</b></p>
|
||||
|
||||
<p class=MsoNormal>Memory leak caused by Night / Day colour manager now fixed. This
|
||||
would cause memory leaks when multiple files were being analysed off-line and
|
||||
would eventually crash PAMGUARD. The way that colours are managed in PAMGUARD
|
||||
has been rewritten. </p>
|
||||
<p class=MsoNormal>Memory leak caused by Night / Day colour manager now fixed.
|
||||
This would cause memory leaks when multiple files were being analysed off-line
|
||||
and would eventually crash PAMGUARD. The way that colours are managed in
|
||||
PAMGUARD has been rewritten. </p>
|
||||
|
||||
<p class=MsoNormal>Some issues with Swing fixed that might have been causing
|
||||
hang ups on startup especially on Macs/Linux machines</p>
|
||||
@ -4151,9 +4174,9 @@ Mac/Linux machines)</p>
|
||||
|
||||
<p class=MsoNormal>Parameters dialog shows correct channel numbers</p>
|
||||
|
||||
<p class=MsoNormal>Click classifier mean filter option had a computational
|
||||
error which meant that classifiers using this option would not work. This has
|
||||
now been fixed. </p>
|
||||
<p class=MsoNormal>Click classifier mean filter option had a computational error
|
||||
which meant that classifiers using this option would not work. This has now
|
||||
been fixed. </p>
|
||||
|
||||
<p class=MsoNormal><b>Sound Recorder</b></p>
|
||||
|
||||
@ -4209,8 +4232,8 @@ file)</p>
|
||||
|
||||
<p class=MsoNormal><b>Changes</b></p>
|
||||
|
||||
<p class=MsoNormal>The User Input module (for text entry of information by the user)
|
||||
has been moved from the Displays sub menu of the Add Modules menu, to
|
||||
<p class=MsoNormal>The User Input module (for text entry of information by the
|
||||
user) has been moved from the Displays sub menu of the Add Modules menu, to
|
||||
Utilities. This will not affect how existing settings files are loaded. </p>
|
||||
|
||||
<p class=MsoNormal><b>Multi-screen environments.</b></p>
|
||||
@ -4229,8 +4252,8 @@ acquisition. </p>
|
||||
|
||||
<p class=MsoNormal><b>Bug fixes</b></p>
|
||||
|
||||
<p class=MsoNormal>Speed up of graphics, particularly regarding large quantities
|
||||
of gps track data</p>
|
||||
<p class=MsoNormal>Speed up of graphics, particularly regarding large
|
||||
quantities of gps track data</p>
|
||||
|
||||
<p class=MsoNormal>National Instruments cards with names > 20 characters
|
||||
long are now correctly recognised. </p>
|
||||
@ -4713,12 +4736,12 @@ and Ishmael-type detectors and localisers. </p>
|
||||
<p class=MsoNormal>Information from above modules can be displayed on
|
||||
configurable user displays which support real time scrolling spectrograms and
|
||||
radar displays. Detection and localisation information can be optionally
|
||||
displayed on the map display.Map enhancements include improved scrolling whereby
|
||||
the user can click and drag to pan the area. PamGuard can now interface with
|
||||
MySQL database servers and users can easily select which information is logged.
|
||||
(This replaces the previous 'flat-file' logging feature). A simulation module
|
||||
allows virtual vocalising animals to be placed on the map to assist in training
|
||||
and development. Extensive online user help has been added to PamGuard
|
||||
displayed on the map display.Map enhancements include improved scrolling
|
||||
whereby the user can click and drag to pan the area. PamGuard can now interface
|
||||
with MySQL database servers and users can easily select which information is
|
||||
logged. (This replaces the previous 'flat-file' logging feature). A simulation
|
||||
module allows virtual vocalising animals to be placed on the map to assist in
|
||||
training and development. Extensive online user help has been added to PamGuard
|
||||
Application</p>
|
||||
|
||||
<h2>0.03b - first version used in a real 'at sea' environment.18/08/06</h2>
|
||||
|
||||
2
pom.xml
2
pom.xml
@ -784,7 +784,7 @@
|
||||
<dependency>
|
||||
<groupId>pamguard.org</groupId>
|
||||
<artifactId>x3</artifactId>
|
||||
<version>2.1.0</version>
|
||||
<version>2.2.0</version>
|
||||
</dependency>
|
||||
|
||||
<!-- https://mvnrepository.com/artifact/it.sauronsoftware/jave -->
|
||||
|
||||
4
repo/pamguard/org/x3/2.2.0/_remote.repositories
Normal file
4
repo/pamguard/org/x3/2.2.0/_remote.repositories
Normal file
@ -0,0 +1,4 @@
|
||||
#NOTE: This is a Maven Resolver internal implementation file, its format can be changed without prior notice.
|
||||
#Fri Nov 11 13:13:18 GMT 2022
|
||||
x3-2.2.0.jar>=
|
||||
x3-2.2.0.pom>=
|
||||
BIN
repo/pamguard/org/x3/2.2.0/x3-2.2.0.jar
Normal file
BIN
repo/pamguard/org/x3/2.2.0/x3-2.2.0.jar
Normal file
Binary file not shown.
9
repo/pamguard/org/x3/2.2.0/x3-2.2.0.pom
Normal file
9
repo/pamguard/org/x3/2.2.0/x3-2.2.0.pom
Normal file
@ -0,0 +1,9 @@
|
||||
<?xml version="1.0" encoding="UTF-8"?>
|
||||
<project xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 https://maven.apache.org/xsd/maven-4.0.0.xsd" xmlns="http://maven.apache.org/POM/4.0.0"
|
||||
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
|
||||
<modelVersion>4.0.0</modelVersion>
|
||||
<groupId>pamguard.org</groupId>
|
||||
<artifactId>x3</artifactId>
|
||||
<version>2.2.0</version>
|
||||
<description>POM was created from install:install-file</description>
|
||||
</project>
|
||||
@ -587,7 +587,7 @@ public class FileInputSystem extends DaqSystem implements ActionListener, PamSe
|
||||
System.out.println("The current file was null");
|
||||
return false;
|
||||
}
|
||||
System.out.printf("*********************************** Opening file %s\n", currentFile.getName());
|
||||
// System.out.printf("*********************************** Opening file %s\n", currentFile.getName());
|
||||
|
||||
try {
|
||||
|
||||
|
||||
@ -40,7 +40,7 @@ public class SoundFileTypes {
|
||||
}
|
||||
|
||||
/**
|
||||
* Get a list of used file types. Reaslistically this
|
||||
* Get a list of used file types. Realistically this
|
||||
* can only return one value but possibly it's useful to have it in the same
|
||||
* format as the multiple file version. .
|
||||
* @param aFile
|
||||
|
||||
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
@ -1,2 +1,2 @@
|
||||
JavaSearch 1.0
|
||||
TMAP bs=2048 rt=1 fl=-1 id1=6697 id2=1
|
||||
TMAP bs=2048 rt=1 fl=-1 id1=6700 id2=1
|
||||
|
||||
Binary file not shown.
@ -22,6 +22,7 @@
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<title>Help </title>
|
||||
@ -46,6 +47,7 @@
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<maps>
|
||||
@ -70,6 +72,7 @@
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<homeID>
|
||||
@ -96,6 +99,7 @@ top
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<mapref location="Map.jhm"/>
|
||||
@ -120,6 +124,7 @@ top
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
</maps>
|
||||
@ -144,6 +149,7 @@ top
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<view mergetype="javax.help.UniteAppendMerge">
|
||||
@ -168,6 +174,7 @@ top
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<name>
|
||||
@ -194,6 +201,7 @@ TOC
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<label>
|
||||
@ -220,6 +228,7 @@ TOC
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<type>
|
||||
@ -246,6 +255,7 @@ javax.help.TOCView
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<data>
|
||||
@ -272,6 +282,7 @@ PAMGUARDTOC.xml
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
</view>
|
||||
@ -296,6 +307,7 @@ PAMGUARDTOC.xml
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<view>
|
||||
@ -320,6 +332,7 @@ PAMGUARDTOC.xml
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<name>
|
||||
@ -346,6 +359,7 @@ Index
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<label>
|
||||
@ -372,6 +386,7 @@ Index
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<type>
|
||||
@ -398,6 +413,7 @@ javax.help.IndexView
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<data>
|
||||
@ -424,6 +440,7 @@ PAMGUARDIndex.xml
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
</view>
|
||||
@ -448,6 +465,7 @@ PAMGUARDIndex.xml
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<view>
|
||||
@ -472,6 +490,7 @@ PAMGUARDIndex.xml
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<name>
|
||||
@ -498,6 +517,7 @@ Search
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<label>
|
||||
@ -524,6 +544,7 @@ Search
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<type>
|
||||
@ -550,6 +571,7 @@ javax.help.SearchView
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<data engine="com.sun.java.help.search.DefaultSearchEngine">
|
||||
@ -576,6 +598,7 @@ JavaHelpSearch
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
</view>
|
||||
@ -600,6 +623,7 @@ JavaHelpSearch
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
</helpset>
|
||||
|
||||
@ -2,6 +2,16 @@
|
||||
<!DOCTYPE index PUBLIC "-//Sun Microsystems Inc.//DTD JavaHelp Index Version 1.0//EN" "http://java.sun.com/products/javahelp/index_2_0.dtd"><!--generated by JHelpDev Version: 0.63, 14 May 2008, see jhelpdev.sourceforge.net-->
|
||||
|
||||
<index version="1.0">
|
||||
<indexitem text="SUD Files " target="sound_processing.AcquisitionHelp.docs.sudfiles"/>
|
||||
|
||||
<indexitem text="SoundTrap " target="sound_processing.AcquisitionHelp.docs.sudfiles"/>
|
||||
|
||||
<indexitem text="Sound Trap " target="sound_processing.AcquisitionHelp.docs.sudfiles"/>
|
||||
|
||||
<indexitem text="Click Train " target="detectors.ClickTrainDetector.docs.ClickTrainDetector"/>
|
||||
|
||||
<indexitem text="SUD " target="detectors.clickDetectorHelp.docs.SoundTrapClickDetector"/>
|
||||
|
||||
<indexitem text="SoundTrap " target="detectors.clickDetectorHelp.docs.SoundTrapClickDetector"/>
|
||||
|
||||
<indexitem text="3D Localisation " target="detectors.Pam3DHelp.docs.guiOverview"/>
|
||||
|
||||
@ -1,23 +1,21 @@
|
||||
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
|
||||
<html><head>
|
||||
<link href="../../../pamHelpStylesheet.css" type="text/css" rel="STYLESHEET"><title>Click Classification</title></head>
|
||||
<body><h1>
|
||||
SoundTrap Click Detector
|
||||
</h1><h2>SoundTrap Click Detector</h2>
|
||||
<br>
|
||||
<body><h1>Click Detector</h1>
|
||||
<h2>SoundTrap Click Detector</h2>
|
||||
|
||||
|
||||
<h3>Overview</h3>
|
||||
<p>If you are using a SountTrap recording device with built in click detection from
|
||||
<a href="https://www.oceaninstruments.co.nz/">Ocean Instruments</a>,
|
||||
you may need to use a modified version of the <a href="ClickDetector_clickDetector.html">Click Detector</a>.
|
||||
</p>
|
||||
<p>The SoundTrap click detector allows you to detect and store clicks at high frequencies (say 384kHz), suitable for odontocete echolocation clicks, and
|
||||
at the same time, record audio data files at a lower frequency (e.g. 96 or 48kHz). This optimises disk space usage and makes long deployments
|
||||
of several months possible with moderate data storage. </p>
|
||||
<p>Having two sample rates present within a single PAMGuard configuration is possible, using
|
||||
<a href="../../../sound_processing/decimatorHelp/docs/decimator_decimator.html">Decimator</</a> modules, however such configurations become particularly
|
||||
<p>The SoundTrap click detector allows you to detect and store clicks at high frequencies (say 384kS/sec), suitable for odontocete echolocation clicks, and
|
||||
at the same time, record audio data files at a lower frequency (e.g. 96 or 48kS/sec). This optimises disk space usage and makes long deployments
|
||||
of several months possible without running out of data storage. </p>
|
||||
<p>Having two sample rates present within a single PAMGuard configuration is possible using
|
||||
<a href="../../../sound_processing/decimatorHelp/docs/decimator_decimator.html">Decimator</</a> modules. However such configurations become particularly
|
||||
complicated to configure when the sample rate of the recorded files is lower than the sample rate of the click detector.</p>
|
||||
<p>We therefore recommend that you use a modified version of the <a href="ClickDetector_clickDetector.html">Click Detector</a>which manages it's own sample rate and
|
||||
<p>We therefore recommend that you use a modified version of the <a href="ClickDetector_clickDetector.html">Click Detector</a>, which manages it's own sample rate and
|
||||
channel information based on information extracted from the SoundTrap data.</p>
|
||||
<p>Note that the SoundTrap click detector should only be used for clicks automatically detected by the SoundTrap. If you want to detect clicks from the
|
||||
SoundTrap recordings, then use a normal <a href="ClickDetector_clickDetector.html">Click Detector</a> in the normal way.</p>
|
||||
@ -28,7 +26,7 @@ SoundTrap recordings, then use a normal <a href="ClickDetector_clickDetector.htm
|
||||
<p>
|
||||
From the <strong><em>File>Add modules>Detectors</em></strong> menu, or
|
||||
from the pop-up menu on the data model display, select <i>'SoundTrap Click
|
||||
Detector'</i> near the bottom of the list. Enter a descriptive name for the new detector and press Ok.
|
||||
Detector'</i> near the bottom of the Detectors list. Enter a descriptive name for the new detector and press Ok.
|
||||
</p>
|
||||
|
||||
<h3>Importing SoundTrap Data</h3>
|
||||
@ -50,13 +48,17 @@ SoundTrap recordings, then use a normal <a href="ClickDetector_clickDetector.htm
|
||||
SoundTrap Click Detector and also create a 'SoundTrap Detector Import' module. Then use the import module to import the BCL and DWV
|
||||
data into PAMGuard. Once imported you can run <a href="ClickDetector_clickClassification.html">Click Classifiers</a>
|
||||
and use other Click Detector offline functions to mark events, etc. </p>
|
||||
<p>If you want to run additional analysis on the WAV file data (for example to make noise measurements or to detect whistles),
|
||||
<p>If you want to run additional analysis on the WAV file data (for example to
|
||||
<a href="../../../sound_processing/NoiseBands/Docs/NoiseBands.html">make noise measurements</a> or to
|
||||
<a href="../../whistleMoanHelp/docs/whistleMoan_Overview.html">detect whistles</a>),
|
||||
create a different PAMGuard configuration to process those data.<p>
|
||||
|
||||
<h4>The (better) New Way</h4>
|
||||
<p>Current versions of PAMGuard can read SUD files directly, without first unpacking them into WAV, XML, BCL and DWV files. This not
|
||||
<p>Current versions of PAMGuard can read <a href="../../../sound_processing/AcquisitionHelp/docs/sudfiles.html">SUD files</a> directly,
|
||||
without first unpacking them into WAV, XML, BCL and DWV files. This not
|
||||
only reduces the amount of disk space you need by about x4, but also saves a lot of time.</p>
|
||||
<p>Better still, you can now set up PAMGuard in normal mode to simultaneously process the audio data in the sud file with one set of
|
||||
<p>Better still, you can now set up PAMGuard in normal mode to simultaneously process the audio data in the
|
||||
<a href="../../../sound_processing/AcquisitionHelp/docs/sudfiles.html">SUD file</a> with one set of
|
||||
detectors, and simultaneously extract the click detector data into appropriate files for a SoundTrap Click Detector. </p>
|
||||
|
||||
<p>Start PAMGuard in <a href="../../../overview/PamMasterHelp/docs/normalMode.html">Normal Mode</a> and add a
|
||||
|
||||
@ -18,6 +18,11 @@ SoundTrap recorders from
|
||||
<p>Inflating SUD files to WAV files generally required between 3 and 5 times as much disk space and could also take
|
||||
a fair amount of time, so not inflating will save both!</p>
|
||||
|
||||
<h3>Mixing SUD and WAV files</h3>
|
||||
<p>If a SUD file and a WAV file with the same name are in the same folder, then PAMGuard will ignore the SUD file
|
||||
and process the WAV file. Note that in this case, PAMGuard will be unable to extract any metadata from the SUD file
|
||||
and will not extract SoundTrap Click Detections (see below).</p>
|
||||
|
||||
<h3>SoundTrap Click Detector</h3>
|
||||
<p>If you are using the SoundTrap build in click detector (see SoundTrap manuals) then the SUD files will also contain
|
||||
detected clicks.</p> <p>See the help page for the <a href="../../../detectors/clickDetectorHelp/docs/SoundTrapClickDetector.html">SoundTrap Click Detector</a>
|
||||
|
||||
Loading…
Reference in New Issue
Block a user