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readme for 2.02.06
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README.html
@ -388,7 +388,10 @@ PamguardBeta_ViewerMode.exe):</p>
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<h1><a name="_LATEST_VERSION_2.02.03"></a><em><span style='font-size:12.0pt;
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font-family:"Cambria",serif;font-style:normal'><a
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href="#_Latest_Version_2.02.05">LATEST VERSION 2.02.05 October 2022</a></span></em></h1>
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href="#_Latest_Version_2.02.06">LATEST VERSION 2.02.06 November 2022</a></span></em></h1>
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<h1><em><span style='font-size:12.0pt;font-family:"Cambria",serif;font-style:
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normal'><a href="#_Latest_Version_2.02.05">Version 2.02.05 October 2022</a></span></em></h1>
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<h1><em><span style='font-size:12.0pt;font-family:"Cambria",serif;font-style:
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normal'><a href="#_Latest_Version_2.02.03_2">Version 2.02.03 February 2022</a></span></em></h1>
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@ -443,8 +446,9 @@ Version 2.00.10 June 2017</a></span></h1>
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<h1><span style='font-size:12.0pt'><a href="#_Older_Versions">Older Versions</a></span></h1>
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<h1><a name="_Latest_Version_2.02.03_1"></a><a name="_Latest_Version_2.02.05"></a><span
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lang=EN-US>Latest Version 2.02.06 November 2022</span></h1>
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<h1><a name="_Latest_Version_2.02.03_1"></a><a name="_Latest_Version_2.02.05"></a><a
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name="_Latest_Version_2.02.06"></a><span lang=EN-US>Latest Version 2.02.06
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November 2022</span></h1>
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<h2><span lang=EN-US>Bug Fix</span></h2>
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@ -457,13 +461,14 @@ offline, for example running click classifiers. This is now fixed. </span></p>
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<h2><span lang=EN-US>New Features</span></h2>
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<p class=MsoNormal><span lang=EN-US>SoundTrap SUD file reading. If you’re using
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SoundTrap autonomous recorders from Ocean Instruments, you no longer need to decompress
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the SoundTrap files prior to processing. This will save time and a lot of disk
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space. Extraction of clicks from the inbuilt SoundTrap Click detector an also
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happen while processing SUD file data with other detectors, thereby
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streamlining the whole processing chain. Read the online Help for details. </span></p>
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SoundTrap autonomous recorders from Ocean Instruments, you no longer need to
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decompress the SoundTrap files prior to processing. This will save time and a
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lot of disk space. Extraction of clicks from the inbuilt SoundTrap Click
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detector an also happen while processing SUD file data with other detectors,
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thereby streamlining the whole processing chain. Read the online Help for
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details. </span></p>
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<h1><span lang=EN-US>Latest Version 2.02.05 October 2022</span></h1>
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<h1><span lang=EN-US>Version 2.02.05 October 2022</span></h1>
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<h2><span lang=EN-US>Click Train Detector Features and Bug Fixes</span></h2>
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@ -472,8 +477,8 @@ streamlining the whole processing chain. Read the online Help for details.
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<p class=MsoNormal><span lang=EN-US>Changes to GUI to make dialog shorter for
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low DPI screens. </span></p>
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<p class=MsoNormal><span lang=EN-US>Complete rewrite of the classification system
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to have nested classifiers which can be enabled or disabled. </span></p>
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<p class=MsoNormal><span lang=EN-US>Complete rewrite of the classification
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system to have nested classifiers which can be enabled or disabled. </span></p>
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<p class=MsoNormal><span lang=EN-US>Changes to classification GUI to
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accommodate the new classification system.</span></p>
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@ -581,9 +586,8 @@ the TF FX display to crash if no data were displayed.</span></p>
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<p class=MsoNormal><span lang=EN-US>See major release notes for V 2.02.01
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below. </span></p>
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<p class=MsoNormal><span lang=EN-US>Bug 495: TD FX display throws
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NullPointerException if user has removed all data units and then moves mouse
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over display area.</span></p>
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<p class=MsoNormal><span lang=EN-US>Bug 495: TD FX display throws NullPointerException
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if user has removed all data units and then moves mouse over display area.</span></p>
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<h1><a name="_Latest_Version_2.02.01"></a><span lang=EN-US>Version 2.02.01
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October 2021</span></h1>
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@ -594,23 +598,23 @@ understand the notes listed for <a href="#_Latest_Beta_Version_2.00.10">Beta
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Version 2.00.10</a> before proceeding with installation and use of this
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version.</b></p>
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<p class=MsoNormal>This version of PAMGuard has been bundled with Java 16 (OpenJDK
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release), so you will not need to install a java runtime engine separately.
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PSFX files generated in previous beta releases (2.xx.xx) should be compatible
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with this version, and vice-versa. PSF files generated in core releases
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(1.15.xx) can be loaded in this version, but will be converted to PSFX files
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when PAMGuard exits.</p>
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<p class=MsoNormal>This version of PAMGuard has been bundled with Java 16
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(OpenJDK release), so you will not need to install a java runtime engine
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separately. PSFX files generated in previous beta releases (2.xx.xx) should be
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compatible with this version, and vice-versa. PSF files generated in core
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releases (1.15.xx) can be loaded in this version, but will be converted to PSFX
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files when PAMGuard exits.</p>
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<p class=MsoNormal style='margin-bottom:0cm'><span style='font-size:12.0pt;
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font-family:"Times New Roman",serif'> </span></p>
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<h2>File Format Change</h2>
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<p class=MsoNormal>Changes have been made to the binary file format to support the
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output of additional noise outputs for certain detectors (See below). Binary
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files created with this version will not be compatible with earlier versions
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2.01.### and below. This version will read and may convert earlier format
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binary files.</p>
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<p class=MsoNormal>Changes have been made to the binary file format to support
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the output of additional noise outputs for certain detectors (See below).
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Binary files created with this version will not be compatible with earlier
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versions 2.01.### and below. This version will read and may convert earlier
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format binary files.</p>
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<p class=MsoNormal style='margin-bottom:0cm'><span style='font-size:12.0pt;
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font-family:"Times New Roman",serif'> </span></p>
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@ -629,9 +633,9 @@ href="http://www.pamguard.org/downloads.php?cat_id=3">here</a>.</p>
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lang=EN-US> </span></p>
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<p class=MsoNormal>This module has been renamed “Detection Grouper”, so
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as to avoid confusion with the Group 3D localizer. This is because the
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Detection Grouper is more for organizing data into groups to be localized than
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it is for doing localization.</p>
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as to avoid confusion with the Group 3D localizer. This is because the Detection
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Grouper is more for organizing data into groups to be localized than it is for
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doing localization.</p>
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<p class=MsoNormal><b><span lang=EN-US>Minor Bug Fixes</span></b><span
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lang=EN-US> </span></p>
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@ -696,8 +700,8 @@ Upgrades to how PAMGuard lets the user enter custom date formats in the Sound
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Acquisition dialog </p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>7. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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Extended XML-output support to all of the modules </p>
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
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lang=EN-US> </span>Extended XML-output support to all of the modules </p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>8. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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@ -709,8 +713,8 @@ lang=EN-US> </span>Upgrades to the Symbol Manager framework, to give more
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control over colours and symbols </p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>10. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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Added an option to hide the ship on the map </p>
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
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lang=EN-US> </span>Added an option to hide the ship on the map </p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>11. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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@ -739,9 +743,9 @@ decimating/upsampling by a non-integer amount </p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>16. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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Noise Level Outputs - as an aid to performance diagnosis, some detectors
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(currently the GPL, Click Detector and Whistle and Moan Detector) are outputting
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additional noise metrics to their binary output files. These can be read with
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the <a href="https://sourceforge.net/projects/pamguard/files/Matlab/">PAMGuard
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(currently the GPL, Click Detector and Whistle and Moan Detector) are
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outputting additional noise metrics to their binary output files. These can be
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read with the <a href="https://sourceforge.net/projects/pamguard/files/Matlab/">PAMGuard
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Matlab library</a> and used to diagnose system performance in varying noise
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conditions. Improved displays within PAMGuard for these noise metrics will be
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included in a future release. </p>
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@ -750,9 +754,9 @@ included in a future release. </p>
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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An implementation of the Generalized Power Law Detector, developed by Tyler
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Helble ([Helble et al., ‘A generalized power-law detection algorithm for
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humpback whale vocalizations’, The Journal of the Acoustical Society of
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America, vol. 131, no. 4, pp. 2682–2699, 2012) is now available. For
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details, see the online help </p>
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humpback whale vocalizationsÂ, The Journal of the Acoustical Society of America,
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vol. 131, no. 4, pp. 2682Â2699, 2012) is now available. For details, see the
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online help </p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>18. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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@ -1087,9 +1091,9 @@ lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> &nb
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Bug 435. Logger forms subtabs not working.</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>4. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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Bug 436. Bug in Serial Port interface was occassionally causing PAMGuard to
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crash without error message.</p>
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
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lang=EN-US> </span>Bug 436. Bug in Serial Port interface was occassionally
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causing PAMGuard to crash without error message.</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>5. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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@ -1179,8 +1183,8 @@ Functionality to clone hydrophone streamers. </p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>5. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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Added automatic log file - all messages to the console will now be written to a
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txt file as well. File is stored in user.home/Pamguard folder - look under the
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Help menu item for a shortcut to open the folder. </p>
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txt file as well. File is stored in user.home/Pamguard folder - look under the Help
|
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menu item for a shortcut to open the folder. </p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>6. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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@ -1218,9 +1222,9 @@ Detector display. </p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>1. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
|
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lang=EN-US> </span>This version of PAMGuard has been upgraded to make it
|
||||
compatible with Java 12. psfx files generated in previous beta releases should
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||||
be compatible with this version, and vice-versa.</p>
|
||||
lang=EN-US> </span>This version of PAMGuard has been upgraded to make it compatible
|
||||
with Java 12. psfx files generated in previous beta releases should be
|
||||
compatible with this version, and vice-versa.</p>
|
||||
|
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
|
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@ -1282,8 +1286,8 @@ lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> &nb
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Click Train Detector upgrades, including localisation capabilities.</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>4. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
|
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Updates to the Ishmael detectors.</p>
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
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lang=EN-US> </span>Updates to the Ishmael detectors.</p>
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<!-- ************************************************************************************************************************** --><!-- ************************************************************************************************************************** -->
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@ -1352,8 +1356,8 @@ files.</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>12. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
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</span>Bug 425. Rocca crashing if Click Detector is used as source but the Click
|
||||
Classifier is not configured properly.</p>
|
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</span>Bug 425. Rocca crashing if Click Detector is used as source but the
|
||||
Click Classifier is not configured properly.</p>
|
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>13. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
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@ -1580,8 +1584,8 @@ first time the spectrogram dialog is opened.</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>4. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Bug 385. Bug in offline toolbar which will crash if the classifier
|
||||
dialog is opened and then closed with no classifiers specified.</p>
|
||||
</span>Bug 385. Bug in offline toolbar which will crash if the classifier dialog
|
||||
is opened and then closed with no classifiers specified.</p>
|
||||
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>5. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -1862,9 +1866,9 @@ window.</p>
|
||||
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||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2.</span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Bug 336. Files were being corrupted if the limit file size option was
|
||||
set to a lower value in viewer than it has been when data were collected -
|
||||
would truncate files being rewritten after change.</p>
|
||||
</span>Bug 336. Files were being corrupted if the limit file size option was set
|
||||
to a lower value in viewer than it has been when data were collected - would
|
||||
truncate files being rewritten after change.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>3.</span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -1977,8 +1981,9 @@ lang=EN-US> </span>Added a simulated white noise source which can be moved
|
||||
around in the same way as other sources. </p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>4. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
|
||||
Reworked annotation system, and added annotations to binary storage </p>
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
|
||||
lang=EN-US> </span>Reworked annotation system, and added annotations to binary
|
||||
storage </p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>5. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
|
||||
@ -1999,9 +2004,9 @@ Added circular movement option to source simulation </p>
|
||||
<h1><a name="_Latest_Beta_Version_2.00.10"></a><span lang=EN-US>Beta Version
|
||||
2.00.10 June 2017</span></h1>
|
||||
|
||||
<p class=MsoNormal><span lang=EN-US>PAMGuard Version 2 contains major updates.
|
||||
You should read and understand these notes before proceeding with installation
|
||||
and use of this version. These changes have been funded under contract to NOAA
|
||||
<p class=MsoNormal><span lang=EN-US>PAMGuard Version 2 contains major updates. You
|
||||
should read and understand these notes before proceeding with installation and
|
||||
use of this version. These changes have been funded under contract to NOAA
|
||||
Fisheries, contract no. WE-133F-16-SE-1126.</span></p>
|
||||
|
||||
<h3><span lang=EN-US>Binary File Structural Changes</span></h3>
|
||||
@ -2041,9 +2046,9 @@ in both data stores. </span></p>
|
||||
added to PAMGuard which can display multiple types of data on the same time
|
||||
axis. It can for instance be used to display bearings to whistles on a
|
||||
bearing-time type display similar to that commonly used in the click detector.
|
||||
Composite display graphs containing data from more than one detector are also
|
||||
possible. For details, see the PAMGuard help file (Displays / Time Display FX).
|
||||
Note that this display is only available if you are running Java 8 or later. </span></p>
|
||||
Composite display graphs containing data from more than one detector are also possible.
|
||||
For details, see the PAMGuard help file (Displays / Time Display FX). Note that
|
||||
this display is only available if you are running Java 8 or later. </span></p>
|
||||
|
||||
<h3><span lang=EN-US>Event Marking and the Detection Group Localiser</span></h3>
|
||||
|
||||
@ -2113,10 +2118,10 @@ lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> &nb
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>1.</span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Added Copy-to-Clipboard button to Warning dialogs, to store error
|
||||
messages and stack trace information on the Windows clipboard. This information
|
||||
can then be easily pasted into emails, text documents, etc when contacting
|
||||
Pamguard support.</p>
|
||||
</span>Added Copy-to-Clipboard button to Warning dialogs, to store error messages
|
||||
and stack trace information on the Windows clipboard. This information can then
|
||||
be easily pasted into emails, text documents, etc when contacting Pamguard
|
||||
support.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2.</span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -2144,8 +2149,8 @@ list grew to a ridiculous size. Code has been put in place to a) stop it
|
||||
happening again and b) to repair any configuration files which are corrupted.
|
||||
Corrupted files will be slow to load, slow to save and will be > several
|
||||
megabytes in size. It may be necessary to delete the PamguardSettings table in
|
||||
any databases since these too may have become oversized which will slow down viewer
|
||||
mode PAMGuard start-up.</p>
|
||||
any databases since these too may have become oversized which will slow down
|
||||
viewer mode PAMGuard start-up.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2.</span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -2169,8 +2174,8 @@ working folder, and therefore is set incorrectly. This has been fixed.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>5.</span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Bug 314. If PAMGuard is started by double-clicking on a psf, nothing happens
|
||||
when the user selects save as new configuration. This has been fixed.</p>
|
||||
</span>Bug 314. If PAMGuard is started by double-clicking on a psf, nothing
|
||||
happens when the user selects save as new configuration. This has been fixed.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>6.</span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -2192,9 +2197,9 @@ January 2017</span></h1>
|
||||
<p class=MsoListParagraph style='margin-left:38.25pt;text-indent:-20.25pt'><span
|
||||
lang=EN-US>1.</span><span lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span><span lang=EN-US>Bug 306. Certain methods have been querying
|
||||
AcousticDataUnit.getDuration and expecting to receive a response in
|
||||
milliseconds. However, getDuration actually returns the number of samples.
|
||||
This has been corrected. </span></p>
|
||||
AcousticDataUnit.getDuration and expecting to receive a response in milliseconds.
|
||||
However, getDuration actually returns the number of samples. This has
|
||||
been corrected. </span></p>
|
||||
|
||||
<p class=MsoNormal><b><span lang=EN-US>Plug-Ins</span></b></p>
|
||||
|
||||
@ -2237,9 +2242,9 @@ dependencies)</span></p>
|
||||
|
||||
<p class=MsoNormal><b><span lang=EN-US>Other Changes</span></b></p>
|
||||
|
||||
<p class=MsoNormal><span lang=EN-US>The installer has been updated to handle
|
||||
both 64 bit and 32 bit installations. PAMGuard psf files are now registered in
|
||||
the Windows Registry, so double-clicking on a psf file should run PAMGuard in
|
||||
<p class=MsoNormal><span lang=EN-US>The installer has been updated to handle both
|
||||
64 bit and 32 bit installations. PAMGuard psf files are now registered in the
|
||||
Windows Registry, so double-clicking on a psf file should run PAMGuard in
|
||||
normal mode (as opposed to Viewer or Mixed modes). Note that the Windows
|
||||
Registry can only hold a single executable reference for psf files; therefore,
|
||||
for users with multiple installations of PAMGuard, double-clicking on a psf
|
||||
@ -2302,8 +2307,8 @@ until now. It's fixed.</p>
|
||||
|
||||
<p class=MsoListParagraph style='margin-left:40.5pt;text-indent:-22.5pt'>2.<span
|
||||
style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Bug 292. Incorrect labels on Target Motion panel in viewer - 3D
|
||||
algorithm was labelled as 2D.Fixed</p>
|
||||
</span>Bug 292. Incorrect labels on Target Motion panel in viewer - 3D algorithm
|
||||
was labelled as 2D.Fixed</p>
|
||||
|
||||
<p class=MsoListParagraph style='margin-left:40.5pt;text-indent:-22.5pt'>3.<span
|
||||
style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -2313,8 +2318,8 @@ data for the least square model. Both fixed. </p>
|
||||
|
||||
<p class=MsoListParagraph style='margin-left:40.5pt;text-indent:-22.5pt'>4.<span
|
||||
style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Bug 294. Click classifier was crashing when the 'min amplitude' option was
|
||||
used. This is fixed. </p>
|
||||
</span>Bug 294. Click classifier was crashing when the 'min amplitude' option
|
||||
was used. This is fixed. </p>
|
||||
|
||||
<p class=MsoListParagraph style='margin-left:40.5pt;text-indent:-22.5pt'>5.<span
|
||||
style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -2332,8 +2337,8 @@ appear when you right click on the display. </p>
|
||||
|
||||
<p class=MsoListParagraph style='margin-left:40.5pt;text-indent:-22.5pt'>7.<span
|
||||
style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Bug 297. Airgun display was not correctly showing itself at fixed
|
||||
locations, but always following the vessel track. This is now fixed. </p>
|
||||
</span>Bug 297. Airgun display was not correctly showing itself at fixed locations,
|
||||
but always following the vessel track. This is now fixed. </p>
|
||||
|
||||
<p class=MsoListParagraph style='margin-left:40.5pt;text-indent:-22.5pt'>8.<span
|
||||
style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -2399,8 +2404,8 @@ the database. </span></p>
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2.</span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span><span lang=EN-US>The number of data streams associated with the click
|
||||
detector has been tidied up so that there are a) All Click, b) Tracked Clicks
|
||||
(those which are part of an event) and c) Events. </span></p>
|
||||
detector has been tidied up so that there are a) All Click, b) Tracked Clicks (those
|
||||
which are part of an event) and c) Events. </span></p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>3.</span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -2422,9 +2427,9 @@ combine automatic and manual tracking. </span></p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>6.</span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span><span lang=EN-US>Improved options are available to the user, via the
|
||||
click detector bearing time display, to correct and relabel clicks / entire
|
||||
click trains. </span></p>
|
||||
</span><span lang=EN-US>Improved options are available to the user, via the click
|
||||
detector bearing time display, to correct and relabel clicks / entire click
|
||||
trains. </span></p>
|
||||
|
||||
<p class=MsoNormal><span lang=EN-US>Developers will hopefully find that the
|
||||
target motion code has been improved in a way which will make it much easier to
|
||||
@ -2443,16 +2448,15 @@ intuitive compared to the old method of typing directly into the database. </p>
|
||||
|
||||
<p class=MsoNormal><span lang=EN-US>Users have often found that PAMGuard can be
|
||||
'jumpy', i.e. the spectrogram does not scroll smoothly, but pauses for a second
|
||||
every few seconds. This is caused by the Java garbage collector cleaning up
|
||||
unused objects in memory. With 64 bit versions, which allow for more memory,
|
||||
some of these pauses were becoming quite long (due to the increased amount of
|
||||
memory that needed to be cleaned up). In some circumstances, these pauses were
|
||||
making data acquisition systems unstable. We have therefore entirely rewritten
|
||||
the way in which PAMGuard handles arrays of spectrogram data (complex numbers)
|
||||
so that instead of large numbers of small Java objects there are now fewer,
|
||||
larger, simpler java objects. These reduce processing delays for garbage
|
||||
collection and give an overall speed improvement, but will otherwise not be
|
||||
noticed by users. </span></p>
|
||||
every few seconds. This is caused by the Java garbage collector cleaning up unused
|
||||
objects in memory. With 64 bit versions, which allow for more memory, some of
|
||||
these pauses were becoming quite long (due to the increased amount of memory
|
||||
that needed to be cleaned up). In some circumstances, these pauses were making
|
||||
data acquisition systems unstable. We have therefore entirely rewritten the way
|
||||
in which PAMGuard handles arrays of spectrogram data (complex numbers) so that
|
||||
instead of large numbers of small Java objects there are now fewer, larger,
|
||||
simpler java objects. These reduce processing delays for garbage collection and
|
||||
give an overall speed improvement, but will otherwise not be noticed by users. </span></p>
|
||||
|
||||
<p class=MsoNormal><i><span lang=EN-US>Click Detector RainbowClick file output</span></i></p>
|
||||
|
||||
@ -2600,9 +2604,9 @@ different libraries for control of sound input devices. </span></p>
|
||||
<p class=MsoNormal><span lang=EN-US>This is the first release of a 64 bit
|
||||
version of PAMGuard. As with the 32 bit version a number of C language
|
||||
libraries are required to interface to external sound cards and other data
|
||||
acquisition devices. These have been extensively tested on several different
|
||||
computers, but may not be as stable as the 32 bit versions. Please report any
|
||||
problems immediately to the PAMGuard team. </span></p>
|
||||
acquisition devices. These have been extensively tested on several different computers,
|
||||
but may not be as stable as the 32 bit versions. Please report any problems
|
||||
immediately to the PAMGuard team. </span></p>
|
||||
|
||||
<p class=MsoNormal><b><span lang=EN-US>Other Changes</span></b></p>
|
||||
|
||||
@ -2642,9 +2646,9 @@ contains queries. Fixed.</span></p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2.</span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span><span lang=EN-US>Bug 254. Lookup lists failing in imported SQLite
|
||||
databases. </span>This was caused by the system 'padding' topic's with blank
|
||||
spaces and is now fixed. </p>
|
||||
</span><span lang=EN-US>Bug 254. Lookup lists failing in imported SQLite databases.
|
||||
</span>This was caused by the system 'padding' topic's with blank spaces and is
|
||||
now fixed. </p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>3.</span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -2676,8 +2680,8 @@ name="_Toc312065299"></a><a name="_Toc312063944"></a><a name="_Toc312065300"></a
|
||||
name="_Toc312063945"></a>Version 1.14.00 Beta, September 2015</h1>
|
||||
|
||||
<p class=MsoNormal>The format of configuration files has changed for version
|
||||
1.14.00. Older configurations will load with this new version, but
|
||||
configurations saved with 1.14.00 may not open correctly with earlier versions.</p>
|
||||
1.14.00. Older configurations will load with this new version, but configurations
|
||||
saved with 1.14.00 may not open correctly with earlier versions.</p>
|
||||
|
||||
<p class=MsoNormal>PAMGuard Versions 1.14.00 and above will work with Java 8.
|
||||
PAMGuard will continue to work with Java 7, but support for Java 7 will be
|
||||
@ -2744,9 +2748,9 @@ displaying in the viewer. This is now fixed. </span></p>
|
||||
<p class=MsoListParagraph style='margin-left:38.25pt;text-indent:-20.25pt'><span
|
||||
lang=EN-US>3.</span><span lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span><span lang=EN-US>Bug 248. Crash in hydrophone array manager. Bug in
|
||||
array manager would crash PAMGuard when the click detector was configured with
|
||||
more channels than the sound acquisition system (almost impossible to achieve,
|
||||
but someone managed it). </span></p>
|
||||
array manager would crash PAMGuard when the click detector was configured with more
|
||||
channels than the sound acquisition system (almost impossible to achieve, but
|
||||
someone managed it). </span></p>
|
||||
|
||||
<p class=MsoListParagraph style='margin-left:38.25pt;text-indent:-20.25pt'><span
|
||||
lang=EN-US>4.</span><span lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -2765,8 +2769,8 @@ lang=EN-US>6.</span><span lang=EN-US style='font-size:7.0pt;font-family:"Times N
|
||||
<p class=MsoListParagraph style='margin-left:38.25pt;text-indent:-20.25pt'><span
|
||||
lang=EN-US>7.</span><span lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span><span lang=EN-US>Bug 252. Bug which plotted bearings to whistle and moan
|
||||
detections from the front hydrophone rather than the central position between
|
||||
hydrophones now fixed. </span></p>
|
||||
detections from the front hydrophone rather than the central position between hydrophones
|
||||
now fixed. </span></p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US> </span></p>
|
||||
|
||||
@ -2857,11 +2861,11 @@ which is useful when using PAMGuard for demonstration purposes. </p>
|
||||
|
||||
<p class=MsoListParagraph style='margin-left:47.25pt;text-indent:-29.25pt'><span
|
||||
lang=EN-US>4.</span><span lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>The sound File and Folder audio input systems now have an optional time
|
||||
zone setting. Note that PAMGuard analysis should still all be taking place in
|
||||
UTC and that this option is intended to allow the conversion of file times
|
||||
which were not recorded as UTC into UTC and not the other way around. Use the
|
||||
option with caution !</p>
|
||||
</span>The sound File and Folder audio input systems now have an optional time zone
|
||||
setting. Note that PAMGuard analysis should still all be taking place in UTC
|
||||
and that this option is intended to allow the conversion of file times which
|
||||
were not recorded as UTC into UTC and not the other way around. Use the option
|
||||
with caution !</p>
|
||||
|
||||
<p class=MsoListParagraph style='margin-left:47.25pt;text-indent:-29.25pt'><span
|
||||
lang=EN-US>5.</span><span lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -3068,16 +3072,17 @@ PAMGuard should be started and stopped using the red and black buttons.</p>
|
||||
<p class=MsoNormal><i>DIFAR</i> (Localisation Group)</p>
|
||||
|
||||
<p class=MsoNormal>This module, funded by the Australian Antarctic Division
|
||||
allows the de-multiplexing and calculation of angles from military style DIFAR
|
||||
sonobuoys. See online help for details. </p>
|
||||
allows the de-multiplexing and calculation of angles from military style DIFAR sonobuoys.
|
||||
See online help for details. </p>
|
||||
|
||||
<p class=MsoNormal><i>MEAL Localiser</i> (Localisation Group)</p>
|
||||
|
||||
<p class=MsoNormal>This module, developed by Jamie Macaulay of St Andrews University
|
||||
estimates the 3D localisation of clicks using a variety of algorithms. It's
|
||||
primarily been developed to track harbour porpoise in three dimensions over
|
||||
scales of 10's of metres. While currently only working with output from the
|
||||
click detector, we hope eventually to extend its use to whistles as well. </p>
|
||||
<p class=MsoNormal>This module, developed by Jamie Macaulay of St Andrews
|
||||
University estimates the 3D localisation of clicks using a variety of
|
||||
algorithms. It's primarily been developed to track harbour porpoise in three
|
||||
dimensions over scales of 10's of metres. While currently only working with
|
||||
output from the click detector, we hope eventually to extend its use to
|
||||
whistles as well. </p>
|
||||
|
||||
<p class=MsoNormal><i>Accelerometer Readout</i> (Sensors group)</p>
|
||||
|
||||
@ -3169,9 +3174,9 @@ File/BinaryStore/Datagram options menu. </p>
|
||||
|
||||
<p class=MsoNormal><i>Viewer Configuration</i></p>
|
||||
|
||||
<p class=MsoNormal>The Viewer configuration is now saved into a separate
|
||||
database table from 'normal' settings so that Viewer can run at same time as
|
||||
normal operation, but with slightly different display settings. </p>
|
||||
<p class=MsoNormal>The Viewer configuration is now saved into a separate database
|
||||
table from 'normal' settings so that Viewer can run at same time as normal
|
||||
operation, but with slightly different display settings. </p>
|
||||
|
||||
<p class=MsoNormal><i>Spectrogram Display</i></p>
|
||||
|
||||
@ -3187,8 +3192,8 @@ horizon. </p>
|
||||
|
||||
<p class=MsoNormal><i>Improved Filter Options</i></p>
|
||||
|
||||
<p class=MsoNormal>Filter options (used as stand-alone filter modules and also within
|
||||
many other modules, such as the click detector and the Filtered Noise
|
||||
<p class=MsoNormal>Filter options (used as stand-alone filter modules and also
|
||||
within many other modules, such as the click detector and the Filtered Noise
|
||||
Measurement module) have been improved so that the user can specify arbitrarily
|
||||
shaped Finite Impulse Response filters (see online help for details). </p>
|
||||
|
||||
@ -3247,11 +3252,10 @@ whistle.</p>
|
||||
<li class=MsoNormal style='margin-bottom:0cm'>Storage options (<a
|
||||
href="https://sourceforge.net/p/pamguard/bugs/175/">https://sourceforge.net/p/pamguard/bugs/175/</a>)
|
||||
whereby clicks were stored to database is now fixed. </li>
|
||||
<li class=MsoNormal style='margin-bottom:0cm'>Sound Recorder output folder is
|
||||
now defaulting to the User folder (Generally
|
||||
C:\Users\username\PAMRecordings) instead of C:\Program Files
|
||||
(x86)\PamguardBeta which didn't work since the software doesn't have write
|
||||
access to that folder. </li>
|
||||
<li class=MsoNormal style='margin-bottom:0cm'>Sound Recorder output folder is now
|
||||
defaulting to the User folder (Generally C:\Users\username\PAMRecordings)
|
||||
instead of C:\Program Files (x86)\PamguardBeta which didn't work since the
|
||||
software doesn't have write access to that folder. </li>
|
||||
</ol>
|
||||
|
||||
<p class=MsoNormal> </p>
|
||||
@ -3338,9 +3342,9 @@ information correctly in the binary files. </p>
|
||||
|
||||
<p class=MsoNormal style='margin-left:36.0pt'><i>Logger Forms</i></p>
|
||||
|
||||
<p class=MsoNormal style='margin-left:36.0pt'>A substantial amount of work has
|
||||
been carried out on Logger forms, funded by the South West fisheries Science
|
||||
Center. </p>
|
||||
<p class=MsoNormal style='margin-left:36.0pt'>A substantial amount of work has been
|
||||
carried out on Logger forms, funded by the South West fisheries Science Center.
|
||||
</p>
|
||||
|
||||
<p class=MsoNormal style='margin-left:36.0pt'><i>Click Detector</i></p>
|
||||
|
||||
@ -3529,8 +3533,8 @@ features of the display:</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>The spectrogram will automatically generate and display spectrogram data.
|
||||
</p>
|
||||
</span>The spectrogram will automatically generate and display spectrogram
|
||||
data. </p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -3644,8 +3648,8 @@ Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif
|
||||
<p class=MsoNormal>The offline viewer is much improved with better data
|
||||
scrolling and the ability to view data either stored in the database or the
|
||||
binary storage system. Work has stated on functions which read and use data
|
||||
stored in audio files. This is currently limited to re-calculating and displaying
|
||||
displaying spectrogram data during viewer mode operation. </p>
|
||||
stored in audio files. This is currently limited to re-calculating and
|
||||
displaying displaying spectrogram data during viewer mode operation. </p>
|
||||
|
||||
<p class=MsoNormal>3. Heading sensor readout</p>
|
||||
|
||||
@ -3719,14 +3723,14 @@ lookup tables relating hardware channel numbers to internal channel numbers.
|
||||
0 and 1 from a normal sound card or a list of channels 0,1,2,3, etc from an
|
||||
ASIO card or National Instruments card. However, when using the ASIO sound
|
||||
acquisition system, it is possible to read out hardware channels 2,3,4,5 say
|
||||
and those numbers would propagate through PAMGUARD and be used by all the detectors.
|
||||
While this gave some clarity to the displays, it also created a number of
|
||||
problems since look up tables were constantly required to relate hardware
|
||||
numbers and software numbers in every PAMGUARD module. Since this type of
|
||||
channel numbering was only implemented several years into the PAMGUARD project,
|
||||
it was never fully implemented or well supported by the different modules which
|
||||
resulted in a number of bugs which could cause confusion as to which
|
||||
hydrophones were being used during localisation or during calibrated
|
||||
and those numbers would propagate through PAMGUARD and be used by all the
|
||||
detectors. While this gave some clarity to the displays, it also created
|
||||
a number of problems since look up tables were constantly required to relate
|
||||
hardware numbers and software numbers in every PAMGUARD module. Since this type
|
||||
of channel numbering was only implemented several years into the PAMGUARD
|
||||
project, it was never fully implemented or well supported by the different
|
||||
modules which resulted in a number of bugs which could cause confusion as to
|
||||
which hydrophones were being used during localisation or during calibrated
|
||||
measurement. The situation tended to only arise with a small number of ASIO
|
||||
sound cards such as the RME Fireface 400 on which the most useful inputs, the
|
||||
balanced line inputs, are hardware channels 4,5,6 and 7 on the back of the
|
||||
@ -3741,10 +3745,10 @@ re-label those channels 0,1,2,3. </p>
|
||||
<p class=MsoNormal>There have been other annoyances with the ASIO channel
|
||||
numbering scheme. For instance, if you had a configuration which worked in real
|
||||
time using channels 7 and 8 of a sound card, you could not use that same
|
||||
configuration to analyse wav files, which would always read their data as channels
|
||||
0 and 1. Similarly if you switched sound cards, you may have to reconfigure
|
||||
every detector and several of the displays to handle the changes in channel
|
||||
numbering. </p>
|
||||
configuration to analyse wav files, which would always read their data as
|
||||
channels 0 and 1. Similarly if you switched sound cards, you may have to
|
||||
reconfigure every detector and several of the displays to handle the changes in
|
||||
channel numbering. </p>
|
||||
|
||||
<p class=MsoNormal>I have spent a considerable amount of time trying to work
|
||||
out a better system for handling channel numbering in PAMGUARD and have decided
|
||||
@ -3784,8 +3788,8 @@ minute of data during real time operation. </p>
|
||||
|
||||
<p class=MsoNormal>PAMGUARD Viewer scrolling mechanism has changed. </p>
|
||||
|
||||
<p class=MsoNormal>Each display now has a small control in the right hand end
|
||||
of a scroll bar or a slider which allows you to page through data. This is only
|
||||
<p class=MsoNormal>Each display now has a small control in the right hand end of
|
||||
a scroll bar or a slider which allows you to page through data. This is only
|
||||
well implemented for the map, but will be an increasingly important feature as
|
||||
more displays are set up for offline data viewing in future releases. </p>
|
||||
|
||||
@ -3940,10 +3944,10 @@ synchronisation.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Wigner time-frequency plot for the click detector. Clicks are NOT automatically
|
||||
displayed in the Winger window as they are for the waveform and spectrum
|
||||
windows since the Wigner transformation is very time consuming. Clicks will be
|
||||
displayed if you select them with the mouse.</p>
|
||||
</span>Wigner time-frequency plot for the click detector. Clicks are NOT
|
||||
automatically displayed in the Winger window as they are for the waveform and
|
||||
spectrum windows since the Wigner transformation is very time consuming. Clicks
|
||||
will be displayed if you select them with the mouse.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -4174,9 +4178,9 @@ Mac/Linux machines)</p>
|
||||
|
||||
<p class=MsoNormal>Parameters dialog shows correct channel numbers</p>
|
||||
|
||||
<p class=MsoNormal>Click classifier mean filter option had a computational error
|
||||
which meant that classifiers using this option would not work. This has now
|
||||
been fixed. </p>
|
||||
<p class=MsoNormal>Click classifier mean filter option had a computational
|
||||
error which meant that classifiers using this option would not work. This has
|
||||
now been fixed. </p>
|
||||
|
||||
<p class=MsoNormal><b>Sound Recorder</b></p>
|
||||
|
||||
@ -4404,8 +4408,8 @@ channels or textual content change. </p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Model viewer. Have stopped it from jumping on top of the main PAMGUARD display
|
||||
when dialogs are closed. </p>
|
||||
</span>Model viewer. Have stopped it from jumping on top of the main PAMGUARD
|
||||
display when dialogs are closed. </p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
|
@ -4,7 +4,7 @@
|
||||
<groupId>org.pamguard</groupId>
|
||||
<artifactId>Pamguard</artifactId>
|
||||
<name>Pamguard Java12+</name>
|
||||
<version>2.02.04ae</version>
|
||||
<version>2.02.05a</version>
|
||||
<description>Pamguard for Java 12+, using Maven to control dependcies</description>
|
||||
<url>www.pamguard.org</url>
|
||||
<organization>
|
||||
|
@ -83,8 +83,8 @@ public class SudFileDWVHandler implements SUDNotificationHandler {
|
||||
|
||||
@Override
|
||||
public void sudStreamClosed() {
|
||||
System.out.printf("SUD input stream closed, %d DWV, %d bcl Detectins and %d BCL Noise, %d chunks processed\n",
|
||||
dwvCount, bclDetCount, bclNoiseCount, processedChunks);
|
||||
// System.out.printf("SUD input stream closed, %d DWV, %d bcl Detectins and %d BCL Noise, %d chunks processed\n",
|
||||
// dwvCount, bclDetCount, bclNoiseCount, processedChunks);
|
||||
}
|
||||
|
||||
@Override
|
||||
|
Loading…
Reference in New Issue
Block a user