mirror of
https://github.com/PAMGuard/PAMGuard.git
synced 2025-02-16 17:22:46 +00:00
Merge branch 'main' of https://github.com/macster110/PAMGuard
This commit is contained in:
Jamie Mac
commit
bf221c786b
214
README.html
214
README.html
@ -368,21 +368,21 @@ should be something like:</p>
|
||||
-Xms384m -Xmx4096m -Djava.library.path=lib64 -jar Pamguard_xxxxxx.jar</span></em></p>
|
||||
|
||||
<p class=MsoNormal>The -Xms384m -Xmx4096m specify the initial and maximum heap
|
||||
size for the JVM being used to run Pamguard i.e. how much memory it gets to use.
|
||||
The default max size usually being too low.</p>
|
||||
size for the JVM being used to run Pamguard i.e. how much memory it gets to
|
||||
use. The default max size usually being too low.</p>
|
||||
|
||||
<p class=MsoNormal>The -Djava.library.path=lib64 tells the JVM that it should
|
||||
look in the folder called "lib64" for the required shared libraries
|
||||
(change to <em><span style='font-family:"Calibri",sans-serif'>lib</span></em>
|
||||
for the 32 bit version).</p>
|
||||
look in the folder called "lib64" for the required shared libraries (change
|
||||
to <em><span style='font-family:"Calibri",sans-serif'>lib</span></em> for the
|
||||
32 bit version).</p>
|
||||
|
||||
<p class=MsoNormal>For "Mixed" and "Viewer" modes just add
|
||||
a "-m" or "-v" to the list of java arguments. On Windows
|
||||
just run the appropriately named executable (e.g. PamguardBeta_MixedMode.exe or
|
||||
PamguardBeta_ViewerMode.exe):</p>
|
||||
|
||||
<p class=MsoNormal><em><span style='font-family:"Calibri",sans-serif'>java
|
||||
-Xms384m -Xmx4096m -Djava.library.path=lib64 -jar PamguardBeta_xxxxxx.jar -v</span></em></p>
|
||||
<p class=MsoNormal><em><span style='font-family:"Calibri",sans-serif'>java -Xms384m
|
||||
-Xmx4096m -Djava.library.path=lib64 -jar PamguardBeta_xxxxxx.jar -v</span></em></p>
|
||||
|
||||
<p class=MsoNormal><em><span style='font-family:"Calibri",sans-serif'> </span></em></p>
|
||||
|
||||
@ -453,8 +453,8 @@ lang=EN-US>Latest Version 2.02.05 October 2022</span></h1>
|
||||
<p class=MsoNormal><span lang=EN-US>Changes to GUI to make dialog shorter for
|
||||
low DPI screens. </span></p>
|
||||
|
||||
<p class=MsoNormal><span lang=EN-US>Complete rewrite of the classification
|
||||
system to have nested classifiers which can be enabled or disabled. </span></p>
|
||||
<p class=MsoNormal><span lang=EN-US>Complete rewrite of the classification system
|
||||
to have nested classifiers which can be enabled or disabled. </span></p>
|
||||
|
||||
<p class=MsoNormal><span lang=EN-US>Changes to classification GUI to
|
||||
accommodate the new classification system.</span></p>
|
||||
@ -500,7 +500,7 @@ audio files. </span></p>
|
||||
<h2><span lang=EN-US>Bug Fixes</span></h2>
|
||||
|
||||
<p class=MsoNormal><span lang=EN-US>Soundtrap DWV import. Will now generate binary
|
||||
files even if DWV file doesn’t exist (which is correct behavior in quiet
|
||||
files even if DWV file doesnt exist (which is correct behavior in quiet
|
||||
conditions when no clicks were detected). </span></p>
|
||||
|
||||
<p class=MsoNormal><span lang=EN-US>Spectrogram. Changes to stop occasional
|
||||
@ -511,6 +511,10 @@ monitors so that data fields are sized correctly. </span></p>
|
||||
|
||||
<p class=MsoNormal><span lang=EN-US>Fixed a memory leak in ROCCA</span></p>
|
||||
|
||||
<p class=MsoNormal><span lang=EN-US>Fixed issues with options in Click Detector
|
||||
bearing time display which (when using planar and 3D arrays) allow you to plot
|
||||
relative to the array, the vessel, or North. </span></p>
|
||||
|
||||
<h1><a name="_Latest_Version_2.02.03_2"></a><span lang=EN-US>Version 2.02.03
|
||||
February 2022</span></h1>
|
||||
|
||||
@ -531,7 +535,7 @@ running in real time. Added template names based on file names. </p>
|
||||
<p class=MsoNormal>#13 Merging files when offline processing file folders: Had
|
||||
an error introduced in last release which caused it to fail to recognise gaps
|
||||
between files, meaning that some output data (i.e. after a gap) would have an
|
||||
incorrect time stamp. This did not affect data if the ‘merge contiguous files’
|
||||
incorrect time stamp. This did not affect data if the merge contiguous files
|
||||
option was not selected. </p>
|
||||
|
||||
<p class=MsoNormal>#14 Logger forms data were not plotting correctly. This was
|
||||
@ -605,7 +609,7 @@ href="http://www.pamguard.org/downloads.php?cat_id=3">here</a>.</p>
|
||||
<p class=MsoNormal><b><span lang=EN-US>Detection Group Localiser</span></b><span
|
||||
lang=EN-US> </span></p>
|
||||
|
||||
<p class=MsoNormal>This module has been renamed “Detection Grouper”, so as to
|
||||
<p class=MsoNormal>This module has been renamed Detection Grouper, so as to
|
||||
avoid confusion with the Group 3D localizer. This is because the Detection
|
||||
Grouper is more for organizing data into groups to be localized than it is for
|
||||
doing localization.</p>
|
||||
@ -709,16 +713,16 @@ lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> &nb
|
||||
new CPOD features </p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>15. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
|
||||
Better interpolation of data by the Decimator when decimating/upsampling by a
|
||||
non-integer amount </p>
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
|
||||
lang=EN-US> </span>Better interpolation of data by the Decimator when
|
||||
decimating/upsampling by a non-integer amount </p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>16. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
|
||||
Noise Level Outputs - as an aid to performance diagnosis, some detectors
|
||||
(currently the GPL, Click Detector and Whistle and Moan Detector) are
|
||||
outputting additional noise metrics to their binary output files. These can be
|
||||
read with the <a href="https://sourceforge.net/projects/pamguard/files/Matlab/">PAMGuard
|
||||
(currently the GPL, Click Detector and Whistle and Moan Detector) are outputting
|
||||
additional noise metrics to their binary output files. These can be read with
|
||||
the <a href="https://sourceforge.net/projects/pamguard/files/Matlab/">PAMGuard
|
||||
Matlab library</a> and used to diagnose system performance in varying noise
|
||||
conditions. Improved displays within PAMGuard for these noise metrics will be
|
||||
included in a future release. </p>
|
||||
@ -726,10 +730,10 @@ included in a future release. </p>
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>17. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
|
||||
An implementation of the Generalized Power Law Detector, developed by Tyler
|
||||
Helble ([Helble et al., ‘A generalized power-law detection algorithm for
|
||||
humpback whale vocalizations’, The Journal of the Acoustical Society of
|
||||
America, vol. 131, no. 4, pp. 2682–2699, 2012) is now available. For details,
|
||||
see the online help </p>
|
||||
Helble ([Helble et al., A generalized power-law detection algorithm for humpback
|
||||
whale vocalizations, The Journal of the Acoustical Society of America, vol.
|
||||
131, no. 4, pp. 26822699, 2012) is now available. For details, see the online
|
||||
help </p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>18. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
|
||||
@ -816,8 +820,8 @@ Measurement module. </p>
|
||||
<p class=MsoNormal><b><span lang=EN-US>Upgrades</span></b></p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>1. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
|
||||
Speed up adding subdetections to superdetections. </p>
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
|
||||
lang=EN-US> </span>Speed up adding subdetections to superdetections. </p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
|
||||
@ -969,15 +973,15 @@ lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> &nb
|
||||
Add functionality for bluetooth headsets. </p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
|
||||
Add user-facing option to adjust the startup delay for the time-correction
|
||||
(Global Time module). This provides a workaround to speed up analysis of
|
||||
thousands of wav files (i.e. by setting startup delay to 0 instead of default
|
||||
value of 2000 ms). </p>
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
|
||||
lang=EN-US> </span>Add user-facing option to adjust the startup delay for the
|
||||
time-correction (Global Time module). This provides a workaround to speed up
|
||||
analysis of thousands of wav files (i.e. by setting startup delay to 0 instead
|
||||
of default value of 2000 ms). </p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>3. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
|
||||
Add support for RS Aqua time format. </p>
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
|
||||
lang=EN-US> </span>Add support for RS Aqua time format. </p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>4. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
|
||||
@ -1055,9 +1059,9 @@ lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> &nb
|
||||
Bug 433. Custom storage options were being lost when Pamguard restarted.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
|
||||
Bug 434. Pamguard Viewer mode was having problems importing settings from psfx
|
||||
file.</p>
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
|
||||
lang=EN-US> </span>Bug 434. Pamguard Viewer mode was having problems importing
|
||||
settings from psfx file.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>3. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
|
||||
@ -1105,8 +1109,8 @@ files.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>13. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
|
||||
Bug 445. Overlay data in FX spectrogram display gets out of sync with
|
||||
underlying spectrogram image.</p>
|
||||
Bug 445. Overlay data in FX spectrogram display gets out of sync with underlying
|
||||
spectrogram image.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>14. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
|
||||
@ -1194,10 +1198,10 @@ Detector display. </p>
|
||||
<p class=MsoNormal><b><span lang=EN-US>Upgrades</span></b></p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>1. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
|
||||
This version of PAMGuard has been upgraded to make it compatible with Java 12.
|
||||
psfx files generated in previous beta releases should be compatible with this
|
||||
version, and vice-versa.</p>
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
|
||||
lang=EN-US> </span>This version of PAMGuard has been upgraded to make it
|
||||
compatible with Java 12. psfx files generated in previous beta releases should
|
||||
be compatible with this version, and vice-versa.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
|
||||
@ -1352,8 +1356,8 @@ lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> &nb
|
||||
lang=EN-US> </span>Better display of microseconds in dialogs.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>4. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
|
||||
Added adaptive noise filter to Ishmael Detectors.</p>
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
|
||||
lang=EN-US> </span>Added adaptive noise filter to Ishmael Detectors.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>5. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
|
||||
@ -1478,8 +1482,8 @@ session, but not forever.</p>
|
||||
|
||||
<!-- ************************************************************************************************************************** --><!-- ************************************************************************************************************************** -->
|
||||
|
||||
<h1><a name="_Latest_Beta_Version_2.00.14c"></a><span lang=EN-US>Beta Version
|
||||
2.00.14c October 2018</span></h1>
|
||||
<h1><a name="_Latest_Beta_Version_2.00.14c"></a><span lang=EN-US>Beta Version 2.00.14c
|
||||
October 2018</span></h1>
|
||||
|
||||
<p class=MsoNormal><span lang=EN-US>PAMGuard Version 2 contains major updates.
|
||||
You should read and understand the notes listed for <a
|
||||
@ -1586,8 +1590,7 @@ Annotation module which has now been given two text type annotations.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>9. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Bug 391. Click Detector not registering change in multi-threading
|
||||
option.</p>
|
||||
</span>Bug 391. Click Detector not registering change in multi-threading option.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>10. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -1611,9 +1614,9 @@ position for hydrophone 0.</p>
|
||||
<p class=MsoNormal><b><span lang=EN-US>Upgrades</span></b></p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>1. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
|
||||
Better way of coupling scrollers in User Display panels - see new options in
|
||||
main menu.</p>
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
|
||||
lang=EN-US> </span>Better way of coupling scrollers in User Display panels -
|
||||
see new options in main menu.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
|
||||
@ -1743,8 +1746,7 @@ will be converted.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>4. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
|
||||
Many updates to the Video Range module. Will currently only work with
|
||||
landmarks.</p>
|
||||
Many updates to the Video Range module. Will currently only work with landmarks.</p>
|
||||
|
||||
<!-- ************************************************************************************************************************** -->
|
||||
|
||||
@ -1807,8 +1809,8 @@ Beta versions</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>11. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Bug 366. Rocca manual whistle contour extraction throws error when
|
||||
trying to classify a boxed whistle</p>
|
||||
</span>Bug 366. Rocca manual whistle contour extraction throws error when trying
|
||||
to classify a boxed whistle</p>
|
||||
|
||||
<p class=MsoNormal><b><span lang=EN-US>Upgrades</span></b></p>
|
||||
|
||||
@ -1877,8 +1879,8 @@ lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> &nb
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>10.</span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Bug 354. Whistle Classifier was crashing if user accidentally entered
|
||||
invalid parameters. Have added diagnostics to prevent this.</p>
|
||||
</span>Bug 354. Whistle Classifier was crashing if user accidentally entered invalid
|
||||
parameters. Have added diagnostics to prevent this.</p>
|
||||
|
||||
<p class=MsoNormal><b><span lang=EN-US>Upgrades</span></b></p>
|
||||
|
||||
@ -1994,7 +1996,7 @@ file format is the addition of a Unique Data Identifier (UID) to each unit of
|
||||
data. This is intended to aid in offline analysis by making it easier for the
|
||||
user to link what they are seeing on different PAMGuard displays and also to
|
||||
link with any data post processed in Matlab or other custom analysis software.
|
||||
UID’s are also added to PAMGuard database tables. </span></p>
|
||||
UIDs are also added to PAMGuard database tables. </span></p>
|
||||
|
||||
<h4><span lang=EN-US>Converting Old Data</span></h4>
|
||||
|
||||
@ -2002,13 +2004,13 @@ UID
|
||||
viewer they will automatically be converted. For safety, the original binary
|
||||
files will not be overwritten and the new data will be placed in a new folder
|
||||
on your computer with the same path as the old data, but suffixed with
|
||||
‘_WithUID’, e.g. if your binary data were previously stored in the folder
|
||||
_WithUID, e.g. if your binary data were previously stored in the folder
|
||||
C:\MySurvey\binarydata the new data will be written to
|
||||
C:\MySurvey\binarydata_WithUID. </span></p>
|
||||
|
||||
<p class=MsoNormal><span lang=EN-US>The additional UID column will be added to
|
||||
all database tables and populated with unique values. For data which are stored
|
||||
in both the binary files and in database tables, the same UID’s will be used in
|
||||
in both the binary files and in database tables, the same UIDs will be used in
|
||||
both data stores. </span></p>
|
||||
|
||||
<h3><span lang=EN-US>New Displays</span></h3>
|
||||
@ -2023,11 +2025,11 @@ Note that this display is only available if you are running Java 8 or later. </s
|
||||
|
||||
<h3><span lang=EN-US>Event Marking and the Detection Group Localiser</span></h3>
|
||||
|
||||
<p class=MsoNormal><span lang=EN-US>A new system of event marking which can be
|
||||
used both online and offline has been added to PAMGuard. Details are in the
|
||||
PAMGuard help file (Displays/Display Marking). Data can be selected on the Map,
|
||||
the Spectrogram Display and the new Time Display FX in a similar way and sent
|
||||
to other PAMGuard modules. The new marking and data selection system works with
|
||||
<p class=MsoNormal><span lang=EN-US>A new system of event marking which can be used
|
||||
both online and offline has been added to PAMGuard. Details are in the PAMGuard
|
||||
help file (Displays/Display Marking). Data can be selected on the Map, the
|
||||
Spectrogram Display and the new Time Display FX in a similar way and sent to
|
||||
other PAMGuard modules. The new marking and data selection system works with
|
||||
the new Detection Group Localiser. The Detection Group Localiser extends the
|
||||
functionality which always existed in the click detector to other types of data
|
||||
(e.g. Whistles) so that they can be grouped and tracked using target motion
|
||||
@ -2152,8 +2154,8 @@ happens when the user selects save as new configuration. This has been fixed.</p
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Bug 315. code searched for file in working folder, which is the
|
||||
installation folder when starting PAMGuard using a shortcut link. But when
|
||||
double-clicking on a psf, the working folder is the location of the psf. This
|
||||
has been fixed.</p>
|
||||
double-clicking on a psf, the working folder is the location of the psf. This has
|
||||
been fixed.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>7.</span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
|
||||
@ -2182,8 +2184,8 @@ jar file will be required rather than a new bespoke PAMGuard installation.</span
|
||||
|
||||
<p class=MsoNormal><span lang=EN-US>Module code development remains largely
|
||||
unchanged, in most cases simply requiring the addition of an interface class.
|
||||
Instructions for the development of new modules utilizing the plug-in
|
||||
scheme can be found <a href="http://www.pamguard.org/16_HowtomakePlug-Ins.html"
|
||||
Instructions for the development of new modules utilizing the plug-in scheme
|
||||
can be found <a href="http://www.pamguard.org/16_HowtomakePlug-Ins.html"
|
||||
target="_blank">here</a>. Plug-in modules can be downloaded from the
|
||||
PAMGuard website here, but developers are encouraged to host and maintain their
|
||||
own modules.</span></p>
|
||||
@ -2191,8 +2193,8 @@ own modules.</span></p>
|
||||
<p class=MsoNormal><span lang=EN-US>Modules of interest to the general PAM
|
||||
community will remain as part of the core PAMGuard installation. However,
|
||||
specialized modules which are useful to only a small number of users have been
|
||||
removed and are available as a separate download. The following modules have
|
||||
been removed:</span></p>
|
||||
removed and are available as a separate download. The following modules have been
|
||||
removed:</span></p>
|
||||
|
||||
<p class=MsoListParagraph style='margin-left:43.5pt;text-indent:-25.5pt'>1.<span
|
||||
style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -2243,7 +2245,7 @@ November 2016</span></h1>
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>1.
|
||||
Bug 303. Some ASIO sound cards not working with either ASIO system in PAMGuard.
|
||||
For the PAMGuard ASIO system, this was due to a data format used by some sound
|
||||
cards never being properly implemented. For the “New ASIO system” which is
|
||||
cards never being properly implemented. For the New ASIO system which is
|
||||
based on jAsioHost, the unpacking of that format contained a bug which returned
|
||||
incorrect numbers, so data were swamped with noise. Both systems are now fixed.
|
||||
By preference, users should use the PAMGuard ASIO system since the JAsioHost
|
||||
@ -2374,9 +2376,9 @@ the database. </span></p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2.</span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span><span lang=EN-US>The number of data streams associated with the click
|
||||
detector has been tidied up so that there are a) All Click, b) Tracked Clicks
|
||||
(those which are part of an event) and c) Events. </span></p>
|
||||
</span><span lang=EN-US>The number of data streams associated with the click detector
|
||||
has been tidied up so that there are a) All Click, b) Tracked Clicks (those
|
||||
which are part of an event) and c) Events. </span></p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>3.</span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -2637,12 +2639,12 @@ boundaries when file durations are set to a maximum fixed value. </p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>5.</span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Bug 262. Access to SQLite database conversion. This would fail when
|
||||
tables were present which were not created by PAMGuard. Fixes have been
|
||||
put in place for spaces in the table name or for not having an 'Id' column.
|
||||
Fixes have not been implemented for spaces in a column name or use of a
|
||||
reserved word as a column name, however if either of these problems do exist it
|
||||
will no longer crash but issue a clear warning and carry onto the next table.</p>
|
||||
</span>Bug 262. Access to SQLite database conversion. This would fail when tables
|
||||
were present which were not created by PAMGuard. Fixes have been put in
|
||||
place for spaces in the table name or for not having an 'Id' column. Fixes have
|
||||
not been implemented for spaces in a column name or use of a reserved word as a
|
||||
column name, however if either of these problems do exist it will no longer
|
||||
crash but issue a clear warning and carry onto the next table.</p>
|
||||
|
||||
<p class=MsoNormal style='margin-left:18.0pt'><span lang=EN-US> </span></p>
|
||||
|
||||
@ -3071,12 +3073,12 @@ marine mammal survey package. See online help for details. </p>
|
||||
|
||||
<p class=MsoNormal><i>Alarms</i> (Utilities Group)</p>
|
||||
|
||||
<p class=MsoNormal>This is a general system of visual and audio alarms
|
||||
developed by Doug Gillespie for use on a variety of projects. The alarms can be
|
||||
coupled to any module or detector in PAMGuard. Where appropriate, modules can
|
||||
control which of their data will cause an alarm action (e.g. in the Click
|
||||
detector you can set which types of classified click will fire the alarm). See
|
||||
online help for details. </p>
|
||||
<p class=MsoNormal>This is a general system of visual and audio alarms developed
|
||||
by Doug Gillespie for use on a variety of projects. The alarms can be coupled
|
||||
to any module or detector in PAMGuard. Where appropriate, modules can control
|
||||
which of their data will cause an alarm action (e.g. in the Click detector you
|
||||
can set which types of classified click will fire the alarm). See online help
|
||||
for details. </p>
|
||||
|
||||
<p class=MsoNormal><i>Noise Band Monitor</i> (Sound Processing Group)</p>
|
||||
|
||||
@ -3140,8 +3142,8 @@ Millisecond time is also now included in the output file names. </p>
|
||||
|
||||
<p class=MsoNormal>Datagram options in Viewer have been improved so that the
|
||||
user has to verify the time binning for datagrams the first time the viewer is
|
||||
run and can also change the time bins from the File menu (See the
|
||||
File/BinaryStore/Datagram options menu. </p>
|
||||
run and can also change the time bins from the File menu (See the File/BinaryStore/Datagram
|
||||
options menu. </p>
|
||||
|
||||
<p class=MsoNormal><i>Viewer Configuration</i></p>
|
||||
|
||||
@ -3577,8 +3579,8 @@ the correct data stream. This has been fixed. </p>
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Whistle classifier has some new features in the classifier training
|
||||
panel. It is also now possible to export training data files directly from
|
||||
binary data files. </p>
|
||||
panel. It is also now possible to export training data files directly from binary
|
||||
data files. </p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -3831,10 +3833,10 @@ port is closed. Might prevent a few problems when using a GPS. </p>
|
||||
<p class=MsoNormal>Crashes caused in real time or Mixed Mode if the number of
|
||||
software channels exceeds the number of hydrophones configured in the array
|
||||
manager. It is of course illogical to have software channels which are not
|
||||
assigned to a hydrophone, so rather than entirely prevent PAMGUARD from
|
||||
crashing I have inserted additional checks into the hydrophone array dialog
|
||||
which will prevent the user from closing that dialog unless all software
|
||||
channels are assigned to a hydrophone. </p>
|
||||
assigned to a hydrophone, so rather than entirely prevent PAMGUARD from crashing
|
||||
I have inserted additional checks into the hydrophone array dialog which will
|
||||
prevent the user from closing that dialog unless all software channels are
|
||||
assigned to a hydrophone. </p>
|
||||
|
||||
<h2><span style='font-weight:normal'>Version 1.8.01 Beta February 2010</span></h2>
|
||||
|
||||
@ -3929,17 +3931,17 @@ classifier is still available). </p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Bearing ambiguity resolution for planar and volumetric arrays. New features
|
||||
in array dialog for estimations of errors on array location. These feed into to
|
||||
a maximum likelihood estimate of angles from small 2D or 3D sub arrays to give
|
||||
two polar angle coordinates. this can be used to resolve left right ambiguity
|
||||
and is implemented for both the click and the whistle/moan detectors. As a
|
||||
result, the click detector bearing time display can now be set to go from -180
|
||||
to 180 degrees rather than 0 - 180 degrees. In this case, clicks in the upper
|
||||
half of the bearing display will be to port and clicks in the right half will
|
||||
be to starboard. As you pass a whale which is to port, the clicks will move UP
|
||||
the display. In the long term, I hope to turn this display around so that time
|
||||
is up the screen rather than across. </p>
|
||||
</span>Bearing ambiguity resolution for planar and volumetric arrays. New
|
||||
features in array dialog for estimations of errors on array location. These
|
||||
feed into to a maximum likelihood estimate of angles from small 2D or 3D sub arrays
|
||||
to give two polar angle coordinates. this can be used to resolve left right
|
||||
ambiguity and is implemented for both the click and the whistle/moan detectors.
|
||||
As a result, the click detector bearing time display can now be set to go from
|
||||
-180 to 180 degrees rather than 0 - 180 degrees. In this case, clicks in the
|
||||
upper half of the bearing display will be to port and clicks in the right half
|
||||
will be to starboard. As you pass a whale which is to port, the clicks will
|
||||
move UP the display. In the long term, I hope to turn this display around so
|
||||
that time is up the screen rather than across. </p>
|
||||
|
||||
<p class=MsoNormal><b>Small features and bug fixes</b></p>
|
||||
|
||||
@ -4228,8 +4230,8 @@ acquisition. </p>
|
||||
|
||||
<p class=MsoNormal><b>Bug fixes</b></p>
|
||||
|
||||
<p class=MsoNormal>Speed up of graphics, particularly regarding large
|
||||
quantities of gps track data</p>
|
||||
<p class=MsoNormal>Speed up of graphics, particularly regarding large quantities
|
||||
of gps track data</p>
|
||||
|
||||
<p class=MsoNormal>National Instruments cards with names > 20 characters
|
||||
long are now correctly recognised. </p>
|
||||
|
||||
@ -4,7 +4,7 @@
|
||||
<groupId>org.pamguard</groupId>
|
||||
<artifactId>Pamguard</artifactId>
|
||||
<name>Pamguard Java12+</name>
|
||||
<version>2.02.04ac</version>
|
||||
<version>2.02.04ae</version>
|
||||
<description>Pamguard for Java 12+, using Maven to control dependcies</description>
|
||||
<url>www.pamguard.org</url>
|
||||
<organization>
|
||||
|
||||
2
pom.xml
2
pom.xml
@ -4,7 +4,7 @@
|
||||
<modelVersion>4.0.0</modelVersion>
|
||||
<groupId>org.pamguard</groupId>
|
||||
<artifactId>Pamguard</artifactId>
|
||||
<version>2.02.04ac</version>
|
||||
<version>2.02.05</version>
|
||||
<name>Pamguard Java12+</name>
|
||||
<description>Pamguard for Java 12+, using Maven to control dependcies</description>
|
||||
<url>www.pamguard.org</url>
|
||||
|
||||
@ -536,8 +536,7 @@ public class PamSettingManager {
|
||||
"This could occur if the psf file location is in a read-only folder, or the filename is " +
|
||||
"invalid. Please check and try again.";
|
||||
String help = null;
|
||||
//Let the warning dialog class choose GUI frame or get a class cast exception if closing PG with different GUI
|
||||
int ans = WarnOnce.showWarning( title, msg, WarnOnce.WARNING_MESSAGE, help);
|
||||
int ans = WarnOnce.showWarning(PamController.getMainFrame(), title, msg, WarnOnce.WARNING_MESSAGE, help);
|
||||
}
|
||||
}
|
||||
/**
|
||||
@ -1292,9 +1291,9 @@ public class PamSettingManager {
|
||||
"<p>The module may or may not load, and even if it " +
|
||||
"loads it may have lost it's settings. Please check before performing any analysis.</p>";
|
||||
String help = null;
|
||||
|
||||
|
||||
int ans = WarnOnce.showWarning(PamController.getMainFrame(), title, msg, WarnOnce.WARNING_MESSAGE, help);
|
||||
|
||||
|
||||
break;
|
||||
}
|
||||
catch (IOException io){
|
||||
|
||||
@ -28,11 +28,11 @@ public class BTDisplayParameters implements Serializable, Cloneable, ManagedPara
|
||||
public static final String[] angleTypeNames = {"Relative to array", "Relative to vessel", "Relative to north"};
|
||||
|
||||
/**
|
||||
* Rotation options for angles.
|
||||
* Rotation options for angles. These should match the above angleTypeNames.
|
||||
*/
|
||||
static public final int ROTATE_TOARRAY = 0; // no rotation, raw angles relative to the array
|
||||
static public final int ROTATE_PITCHROLL = 1; // fix pitch and roll, but leave the heading relative to the array
|
||||
static public final int ROTATE_HEADPITCHROLL = 2; // rotate by heading pitch and roll.
|
||||
static public final int ROTATE_TOVESSEL = 1; // fix pitch and roll, but leave the heading relative to the array
|
||||
static public final int ROTATE_TONORTH = 2; // rotate by heading pitch and roll.
|
||||
|
||||
|
||||
// main BT display
|
||||
|
||||
@ -1642,16 +1642,26 @@ public class ClickBTDisplay extends ClickDisplay implements PamObserver, PamSett
|
||||
double[] rotAngles = new double[3];
|
||||
rotAngles[1] = Math.toRadians(oll.getPitch());
|
||||
rotAngles[2] = Math.toRadians(oll.getRoll());
|
||||
if (rType == BTDisplayParameters.ROTATE_HEADPITCHROLL) {
|
||||
if (rType == BTDisplayParameters.ROTATE_TOVESSEL) {
|
||||
// use head as well as pitch and roll.
|
||||
rotAngles[0] = Math.toRadians(oll.getHeading());
|
||||
PamVector[] vr = loc.getWorldVectors();
|
||||
if (vr != null && vr.length > 0) {
|
||||
return vr[0];
|
||||
}
|
||||
// rotAngles[0] = Math.toRadians(oll.getHeading());
|
||||
}
|
||||
if (rotAngles[0] == 0 && rotAngles[1] == 0 && rotAngles[2] == 0) {
|
||||
return v;
|
||||
else if (rType == BTDisplayParameters.ROTATE_TONORTH) {
|
||||
PamVector[] vr = loc.getRealWorldVectors();
|
||||
if (vr != null && vr.length > 0) {
|
||||
return vr[0];
|
||||
}
|
||||
}
|
||||
PamQuaternion pq = new PamQuaternion(rotAngles[0], rotAngles[1], rotAngles[2]);
|
||||
PamVector v2 = PamVector.rotateVector(v, pq);
|
||||
return v2;
|
||||
// if (rotAngles[0] == 0 && rotAngles[1] == 0 && rotAngles[2] == 0) {
|
||||
// return v;
|
||||
// }
|
||||
// PamQuaternion pq = new PamQuaternion(rotAngles[0], rotAngles[1], rotAngles[2]);
|
||||
// PamVector v2 = PamVector.rotateVector(v, pq);
|
||||
return v;
|
||||
}
|
||||
|
||||
private double angleFromYPos(int yPos) {
|
||||
|
||||
@ -498,7 +498,7 @@
|
||||
plotted on the time-based display by adding Click detections to the
|
||||
display and then using the right</p>
|
||||
<p align="center">
|
||||
<img width="940" height="500" src="resources/clicktrain_TDFx.png">
|
||||
<img width="940" height="500" src="resources/clicktrain_TDFX.png">
|
||||
</p>
|
||||
|
||||
<p>
|
||||
|
||||
Loading…
Reference in New Issue
Block a user