mirror of
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Bug fix
Bug fix in binary store checks
This commit is contained in:
Douglas Gillespie
parent
a7cacc108f
commit
af82147f9e
142
README.html
142
README.html
@ -388,7 +388,10 @@ PamguardBeta_ViewerMode.exe):</p>
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<h1><a name="_LATEST_VERSION_2.02.03"></a><a name="_VERSION_2.02.07_January"></a><em><span
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style='font-size:12.0pt;font-family:"Cambria",serif;font-style:normal'><a
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href="#_Latest_Version_2.02.07">LATEST VERSION 2.02.07 January 2023</a></span></em></h1>
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href="#_Latest_Version_2.02.08">LATEST VERSION 2.02.08 May 2023</a></span></em></h1>
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<h1><em><span style='font-size:12.0pt;font-family:"Cambria",serif;font-style:
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normal'><a href="#_Latest_Version_2.02.07">Version 2.02.07 January 2023</a></span></em></h1>
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<h1><em><span style='font-size:12.0pt;font-family:"Cambria",serif;font-style:
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normal'><a href="#_Latest_Version_2.02.06">Version 2.02.06 November 2022</a></span></em></h1>
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@ -450,14 +453,35 @@ Version 2.00.10 June 2017</a></span></h1>
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<h1><span style='font-size:12.0pt'><a href="#_Older_Versions">Older Versions</a></span></h1>
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<h1><a name="_Latest_Version_2.02.03_1"></a><a name="_Latest_Version_2.02.05"></a><a
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name="_Latest_Version_2.02.06"></a><a name="_Latest_Version_2.02.07"></a><span
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lang=EN-US>Latest Version 2.02.07 January 2023</span></h1>
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name="_Latest_Version_2.02.06"></a><a name="_Latest_Version_2.02.07"></a><a
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name="_Latest_Version_2.02.08"></a><span lang=EN-US>Latest Version 2.02.08 May
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2023</span></h1>
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<h2><span lang=EN-US>Bug Fixes</span></h2>
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<p class=MsoNormal><span lang=EN-US>Use of localization sensor and orientation data
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for static hydrophones had a bug whereby it would continually ‘forget’ angle
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offsets applied to static hydrophones in viewer mode. This is now fixed. </span></p>
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<p class=MsoNormal><span lang=EN-US>ROCCA Memory Leak: A memory leak in ROCCA,
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which mostly occurred when processing large datasets of many offline files, has
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been fixed.</span></p>
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<h2><span lang=EN-US>New Features</span></h2>
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<p class=MsoNormal><span lang=EN-US>Restart Options: When you restart
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processing of offline files, if output data already exist (binary data of
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within database tables) you will be asked if you want to overwrite the data, cancel,
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or try to continue from where to left off. </span></p>
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<p class=MsoNormal><span lang=EN-US>Updated SoundTrap sud file interface so
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that PAMGuard now extracts and stores the Click Detector settings from the sud
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files and stores them within the PAMGuard configuration. This does not affect
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processing, but is important for record keeping. </span></p>
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<h1><span lang=EN-US>Version 2.02.07 January 2023</span></h1>
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<h2><span lang=EN-US>Bug Fixes</span></h2>
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<p class=MsoNormal><span lang=EN-US>Use of localization sensor and orientation
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data for static hydrophones had a bug whereby it would continually ‘forget’
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angle offsets applied to static hydrophones in viewer mode. This is now fixed. </span></p>
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<p class=MsoNormal><span lang=EN-US>Click tool bar: Correctly shows event
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selection options even if no species classification options are in place. </span></p>
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@ -467,8 +491,8 @@ selection options even if no species classification options are in place. </span
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mode. Now fixed. </span></p>
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<p class=MsoNormal><span lang=EN-US>ROCCA: Fixed (another) memory leak which
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caused PAMGuard to crash when processing large data sets with the ROCCA
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classifier. </span></p>
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caused PAMGuard to crash when processing large data sets with the ROCCA classifier.
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</span></p>
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<p class=MsoNormal><span lang=EN-US>Ishmael Modules: Fixed bug which
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occasionally caused crashes when processing many files offline. </span></p>
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@ -1169,8 +1193,8 @@ Bug 441. Plot coordinate calculations incorrect in PamAxis.</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>10. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
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lang=EN-US> </span>Bug 442. BT Display does not change click symbol color when Colour
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By Superdetection is selected.</p>
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lang=EN-US> </span>Bug 442. BT Display does not change click symbol color when
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Colour By Superdetection is selected.</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>11. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
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@ -1194,7 +1218,8 @@ Spectrogram display.</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>15. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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Bug 447. Viewer mode throws exception when trying to load beamformer localisations</p>
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Bug 447. Viewer mode throws exception when trying to load beamformer
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localisations</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>16. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
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@ -1207,8 +1232,8 @@ Bug 449. Rocca Encounter Stats output file calculating incorrect values.</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>18. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
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lang=EN-US> </span>Bug 450. Ishmael Detectors subscribing to FFTDataBlock twice,
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meaning they process each data unit 2x doubling the output.</p>
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lang=EN-US> </span>Bug 450. Ishmael Detectors subscribing to FFTDataBlock
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twice, meaning they process each data unit 2x doubling the output.</p>
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<p class=MsoNormal><b><span lang=EN-US>Upgrades</span></b></p>
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@ -1596,9 +1621,9 @@ lang=EN-US> </span>Added decimal degrees option to latitude/longitude dialog.</p
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
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lang=EN-US> </span>Added option in the Click Delay parameters to restrict the number
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of initial samples used in the calculation. This can be useful for cleaning up
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delays in the presence of echoes and small time delays.</p>
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lang=EN-US> </span>Added option in the Click Delay parameters to restrict the
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number of initial samples used in the calculation. This can be useful for
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cleaning up delays in the presence of echoes and small time delays.</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>3. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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@ -1971,8 +1996,8 @@ User is now able to specify Soundtrap date/time format</p>
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<h1><a name="_Latest_Beta_Version_2.00.11"></a><span lang=EN-US>Beta Version
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2.00.11 October 2017</span></h1>
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<p class=MsoNormal><span lang=EN-US>PAMGuard Version 2 contains major updates. You
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should read and understand the notes listed for <a
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<p class=MsoNormal><span lang=EN-US>PAMGuard Version 2 contains major updates.
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You should read and understand the notes listed for <a
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href="#_Latest_Beta_Version_2.00.10">Beta Version 2.00.10</a> before proceeding
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with installation and use of this version.</span></p>
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@ -2126,8 +2151,8 @@ to colour them by the colour assigned to the group. </span></p>
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<h3><span lang=EN-US>Using Old PAMGuard Configurations</span></h3>
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<p class=MsoNormal><span lang=EN-US>Old PAMGuard configurations will work with the
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new version. However please note the following:</span></p>
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<p class=MsoNormal><span lang=EN-US>Old PAMGuard configurations will work with
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the new version. However please note the following:</span></p>
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<p class=MsoListParagraph style='margin-left:54.0pt;text-indent:-36.0pt'><span
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lang=EN-US>1.</span><span lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
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@ -3147,8 +3172,8 @@ correctly calculated in real world coordinates. </p>
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<p class=MsoNormal><i>Wild ArcGIS Interface</i> (Maps and Mapping group)</p>
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<p class=MsoNormal>This module, developed by Michael Oswald / SWFSC, allows
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PAMGuard to output data in a format suitable for display in the WILD ArcGIS
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marine mammal survey package. See online help for details. </p>
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PAMGuard to output data in a format suitable for display in the WILD ArcGIS marine
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mammal survey package. See online help for details. </p>
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<p class=MsoNormal><i>Alarms</i> (Utilities Group)</p>
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@ -3288,8 +3313,8 @@ whistle.</p>
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forms which did not display correctly in 'night' mode. </li>
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<li class=MsoNormal style='margin-bottom:0cm'>Bug fix in simulator. No longer
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stops or fails to start generating sounds. </li>
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<li class=MsoNormal style='margin-bottom:0cm'>Bug in calculated spectrum levels
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if data were decimated (<a
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<li class=MsoNormal style='margin-bottom:0cm'>Bug in calculated spectrum
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levels if data were decimated (<a
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href="http://sourceforge.net/p/pamguard/bugs/187/">http://sourceforge.net/p/pamguard/bugs/187/</a>)
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. Did not affect band level calculations. </li>
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<li class=MsoNormal style='margin-bottom:0cm'>Bug in noise band monitor.
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@ -3373,9 +3398,9 @@ databases.</p>
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<p class=MsoNormal style='margin-left:36.0pt'>National Instruments cards: Added
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code in support of the new x-series devices. </p>
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<p class=MsoNormal style='margin-left:36.0pt'>ASIO sound cards: Added support for
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a new open source ASIO driver system (jasiohost). The old system has been left
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in place for now while we assess users response to the newer system. </p>
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<p class=MsoNormal style='margin-left:36.0pt'>ASIO sound cards: Added support
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for a new open source ASIO driver system (jasiohost). The old system has been
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left in place for now while we assess users response to the newer system. </p>
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<p class=MsoNormal style='margin-left:36.0pt'><i>AIS</i></p>
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@ -3450,14 +3475,14 @@ have implemented database storage for output of these modules. </p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
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Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
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</span>Radar Display: A bug which stopped the radar display from correctly
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displaying bearings to whistles from arrays containing more than two hydrophone
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elements has been fixed. </p>
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</span>Radar Display: A bug which stopped the radar display from correctly displaying
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bearings to whistles from arrays containing more than two hydrophone elements
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has been fixed. </p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
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Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
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</span>Database Speed: A substantial rewriting of some of the indexing methods in
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the database module has led to a significant increase in the speed at which
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</span>Database Speed: A substantial rewriting of some of the indexing methods
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in the database module has led to a significant increase in the speed at which
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data are written to the database (orders of magnitude for large databases).
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This is having a significant impact on the overall reliability of the software.
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Other changes have increased the speed (again by orders of magnitude) at which
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@ -3564,8 +3589,8 @@ Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
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Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
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</span>Bearings can be calculated using the envelope of the waveform rather
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than the full waveform. The waveform or envelope can also be filtered prior to
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</span>Bearings can be calculated using the envelope of the waveform rather than
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the full waveform. The waveform or envelope can also be filtered prior to
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bearing calculation.</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
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@ -3698,11 +3723,11 @@ Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif
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<p class=MsoNormal>2. Improved offline viewer functionality. </p>
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<p class=MsoNormal>The offline viewer is much improved with better data scrolling
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and the ability to view data either stored in the database or the binary
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storage system. Work has stated on functions which read and use data stored in
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audio files. This is currently limited to re-calculating and displaying
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displaying spectrogram data during viewer mode operation. </p>
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<p class=MsoNormal>The offline viewer is much improved with better data
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scrolling and the ability to view data either stored in the database or the
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binary storage system. Work has stated on functions which read and use data
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stored in audio files. This is currently limited to re-calculating and
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displaying displaying spectrogram data during viewer mode operation. </p>
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<p class=MsoNormal>3. Heading sensor readout</p>
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@ -3721,8 +3746,8 @@ frequency division (i.e. previous versions would convert well from 96kHz to
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<p class=MsoNormal><b>Bug fixes</b></p>
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<p class=MsoNormal>1. Placement of axes on some displays (array manager and
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depth side panel). Problem in 1.9.01 Beta now fixed. </p>
|
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<p class=MsoNormal>1. Placement of axes on some displays (array manager and depth
|
||||
side panel). Problem in 1.9.01 Beta now fixed. </p>
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<p class=MsoNormal>2. Fixed problems of NMEA read out not restarting after a
|
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serial drop out. NMEA now restarts correctly. </p>
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@ -3799,12 +3824,12 @@ re-label those channels 0,1,2,3. </p>
|
||||
numbering scheme. For instance, if you had a configuration which worked in real
|
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time using channels 7 and 8 of a sound card, you could not use that same
|
||||
configuration to analyse wav files, which would always read their data as
|
||||
channels 0 and 1. Similarly if you switched sound cards, you may have to reconfigure
|
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every detector and several of the displays to handle the changes in channel
|
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numbering. </p>
|
||||
channels 0 and 1. Similarly if you switched sound cards, you may have to
|
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reconfigure every detector and several of the displays to handle the changes in
|
||||
channel numbering. </p>
|
||||
|
||||
<p class=MsoNormal>I have spent a considerable amount of time trying to work out
|
||||
a better system for handling channel numbering in PAMGUARD and have decided
|
||||
<p class=MsoNormal>I have spent a considerable amount of time trying to work
|
||||
out a better system for handling channel numbering in PAMGUARD and have decided
|
||||
that the only practical thing to do is to force all software channel numbering
|
||||
back to a zero indexed system. i.e. even if you read out hardware channels
|
||||
3,4,5 and 6, within PAMGUARD, everywhere apart from the Sound acquisition
|
||||
@ -3997,10 +4022,10 @@ synchronisation.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
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Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Wigner time-frequency plot for the click detector. Clicks are NOT
|
||||
automatically displayed in the Winger window as they are for the waveform and
|
||||
spectrum windows since the Wigner transformation is very time consuming. Clicks
|
||||
will be displayed if you select them with the mouse.</p>
|
||||
</span>Wigner time-frequency plot for the click detector. Clicks are NOT automatically
|
||||
displayed in the Winger window as they are for the waveform and spectrum
|
||||
windows since the Wigner transformation is very time consuming. Clicks will be
|
||||
displayed if you select them with the mouse.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -4392,9 +4417,9 @@ a serial port </p>
|
||||
|
||||
<p class=MsoNormal>New Likelihood detector. </p>
|
||||
|
||||
<p class=MsoNormal>The likelihood detector module is an implementation of a likelihood
|
||||
ratio test with flexible algorithms and configuration to estimate likelihood.
|
||||
It is </p>
|
||||
<p class=MsoNormal>The likelihood detector module is an implementation of a
|
||||
likelihood ratio test with flexible algorithms and configuration to estimate
|
||||
likelihood. It is </p>
|
||||
|
||||
<p class=MsoNormal>suitable for detecting both short duration Odontocete clicks
|
||||
(Sperm, Beaked, etc.) as well as moderate duration Mysticete calls (Humpback,
|
||||
@ -4676,8 +4701,7 @@ Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif
|
||||
|
||||
<h2>0.5b 31 August 2007 </h2>
|
||||
|
||||
<p class=MsoNormal>Requires Java 6 Update 2
|
||||
(http://java.com/en/download/manual.jsp)</p>
|
||||
<p class=MsoNormal>Requires Java 6 Update 2 (http://java.com/en/download/manual.jsp)</p>
|
||||
|
||||
<p class=MsoNormal>Major new features include:</p>
|
||||
|
||||
@ -4720,8 +4744,8 @@ Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif
|
||||
<p class=MsoNormal> </p>
|
||||
|
||||
<p class=MsoNormal><a name="_Toc312065304"></a><a name="_Toc312063949"></a><span
|
||||
class=Heading2Char><span style='font-size:13.0pt'>1.0Beta 22 Jan 2008 -
|
||||
Pamguard starts two releases, core and beta release</span></span>, </p>
|
||||
class=Heading2Char><span style='font-size:13.0pt'>1.0Beta 22 Jan 2008 - Pamguard
|
||||
starts two releases, core and beta release</span></span>, </p>
|
||||
|
||||
<p class=MsoNormal>this is the beta release</p>
|
||||
|
||||
@ -4739,8 +4763,8 @@ Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Multi animal click tracking with least squares fit calculation of
|
||||
position on map</p>
|
||||
</span>Multi animal click tracking with least squares fit calculation of position
|
||||
on map</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
|
||||
@ -110,6 +110,9 @@ public class BinaryStoreStatus extends StoreStatus {
|
||||
* @param blockStatus
|
||||
*/
|
||||
public void considerBlockStatus(BinaryStoreStatus blockStatus) {
|
||||
if (blockStatus == null) {
|
||||
return;
|
||||
}
|
||||
considerFirstHeader(blockStatus.firstHeader);
|
||||
considerLastFooter(blockStatus.lastFooter);
|
||||
considerLastData(blockStatus.lastData);
|
||||
|
||||
@ -49,6 +49,9 @@ public class BinaryStoreStatusFuncs {
|
||||
continue;
|
||||
}
|
||||
BinaryStoreStatus blockStatus = getStreamStartEnd(dataSource);
|
||||
if (blockStatus == null) {
|
||||
continue;
|
||||
}
|
||||
binStoreStatus.considerBlockStatus(blockStatus);
|
||||
}
|
||||
|
||||
|
||||
@ -39,11 +39,14 @@ import org.pamguard.x3.sud.SUDClickDetectorInfo;
|
||||
import Acquisition.AcquisitionControl;
|
||||
import PamController.PamControlledUnitSettings;
|
||||
import PamController.PamController;
|
||||
import PamController.PamSettingManager;
|
||||
import PamController.PamSettings;
|
||||
import PamguardMVC.PamRawDataBlock;
|
||||
import clickDetector.ClickBTDisplay;
|
||||
import clickDetector.ClickControl;
|
||||
import clickDetector.ClickDisplay;
|
||||
import clickDetector.ClickDisplayManager;
|
||||
import clickDetector.ClickParameters;
|
||||
import soundtrap.sud.SUDParamsDialog;
|
||||
import soundtrap.sud.SudFileDWVHandler;
|
||||
|
||||
@ -76,6 +79,8 @@ public class STClickControl extends ClickControl {
|
||||
|
||||
sudFileDWVHandler = new SudFileDWVHandler(this);
|
||||
sudFileDWVHandler.subscribeSUD();
|
||||
|
||||
PamSettingManager.getInstance().registerSettings(new SUDSettings());
|
||||
}
|
||||
|
||||
@Override
|
||||
@ -181,23 +186,30 @@ public class STClickControl extends ClickControl {
|
||||
}
|
||||
}
|
||||
|
||||
@Override
|
||||
public long getSettingsVersion() {
|
||||
return SUDClickDetectorInfo.serialVersionUID;
|
||||
}
|
||||
|
||||
@Override
|
||||
public Serializable getSettingsReference() {
|
||||
return getSudClickDetectorInfo();
|
||||
}
|
||||
// this was a bad idea since we need to keep hold of settings for the
|
||||
// classifier, which are in with the main set ...
|
||||
// @Override
|
||||
// public long getSettingsVersion() {
|
||||
// return SUDClickDetectorInfo.serialVersionUID;
|
||||
// }
|
||||
//
|
||||
// @Override
|
||||
// public Serializable getSettingsReference() {
|
||||
// return getSudClickDetectorInfo();
|
||||
// }
|
||||
|
||||
@Override
|
||||
public boolean restoreSettings(PamControlledUnitSettings pamControlledUnitSettings) {
|
||||
// have to leave this in since I've now run data with it using the ST settings,
|
||||
// so some configs may return these !
|
||||
Object o = pamControlledUnitSettings.getSettings();
|
||||
if (o instanceof SUDClickDetectorInfo) {
|
||||
sudClickDetectorInfo = (SUDClickDetectorInfo) o;
|
||||
return true;
|
||||
}
|
||||
if (o instanceof ClickParameters) {
|
||||
return super.restoreSettings(pamControlledUnitSettings);
|
||||
}
|
||||
return false;
|
||||
}
|
||||
|
||||
@ -218,5 +230,44 @@ public class STClickControl extends ClickControl {
|
||||
this.sudClickDetectorInfo = sudClickDetectorInfo;
|
||||
}
|
||||
|
||||
/**
|
||||
* Class to handle SoundTrap click detector settings without messing up
|
||||
* the standard click detector ones which are needed for the classifier.
|
||||
* @author dg50
|
||||
*
|
||||
*/
|
||||
private class SUDSettings implements PamSettings {
|
||||
|
||||
@Override
|
||||
public String getUnitName() {
|
||||
return STClickControl.this.getUnitName();
|
||||
}
|
||||
|
||||
@Override
|
||||
public String getUnitType() {
|
||||
return STUNITTYPE;
|
||||
}
|
||||
|
||||
@Override
|
||||
public Serializable getSettingsReference() {
|
||||
return sudClickDetectorInfo;
|
||||
}
|
||||
|
||||
@Override
|
||||
public long getSettingsVersion() {
|
||||
return SUDClickDetectorInfo.serialVersionUID;
|
||||
}
|
||||
|
||||
@Override
|
||||
public boolean restoreSettings(PamControlledUnitSettings pamControlledUnitSettings) {
|
||||
Object o = pamControlledUnitSettings.getSettings();
|
||||
if (o instanceof SUDClickDetectorInfo) {
|
||||
sudClickDetectorInfo = (SUDClickDetectorInfo) o;
|
||||
return true;
|
||||
}
|
||||
return false;
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
Loading…
Reference in New Issue
Block a user