Merge branch 'main' into main

src/Acquisition/AcquisitionControl.java

@@ -173,8 +173,19 @@ public class AcquisitionControl extends RawInputControlledUnit implements PamSet
 		
 		registerDaqSystem(new SoundCardSystem(this));
 		if (PlatformInfo.calculateOS() == OSType.WINDOWS) {
+			long tic = System.currentTimeMillis();
+			long toc = tic;
 			registerDaqSystem(new ASIOSoundSystem(this));
+			toc = System.currentTimeMillis();
+			if (toc-tic>1000) {
+				System.out.printf("Registering ASIOSoundSystem took %3.1fs\n", (double)(toc-tic)/1000.);
+			}
+			tic = System.currentTimeMillis();
 			registerDaqSystem(new NewAsioSoundSystem(this));
+			toc = System.currentTimeMillis();
+			if (toc-tic>1000) {
+				System.out.printf("Registering NewAsioSoundSystem took %3.1fs\n", (double)(toc-tic)/1000.);
+			}
 		}
 		registerDaqSystem(new FileInputSystem(this));
 		registerDaqSystem(folderSystem = new FolderInputSystem(this));

src/Localiser/LocalisationAlgorithm.java

@@ -0,0 +1,21 @@
+package Localiser;
+
+import PamDetection.LocContents;
+import PamDetection.LocalisationInfo;
+
+/**
+ * Interface to attach to localisation algorithms which can provide basic information
+ * (primarily for better book keeping and Tethys output)
+ * @author dg50
+ *
+ */
+public interface LocalisationAlgorithm {
+
+	/**
+	 * Get the likely content flags for this localiser. 
+	 * @see LocalisationInfo
+	 * @see LocContents
+	 * @return localisation flags. 
+	 */
+	public int getLocalisationContents();
+}

src/Localiser/algorithms/timeDelayLocalisers/bearingLoc/BearingLocaliser.java

@@ -1,5 +1,6 @@
 package Localiser.algorithms.timeDelayLocalisers.bearingLoc;
 
+import Localiser.LocalisationAlgorithm;
 import pamMaths.PamVector;
 
 /**
@@ -8,7 +9,7 @@ import pamMaths.PamVector;
  * @author Doug Gillespie
  *
  */
-public interface BearingLocaliser {
+public interface BearingLocaliser extends LocalisationAlgorithm {
 
 	/**
 	 * Do any preparation necessary (e.g. creation of look up tables)

src/Localiser/algorithms/timeDelayLocalisers/bearingLoc/CombinedBearingLocaliser.java

@@ -1,5 +1,6 @@
 package Localiser.algorithms.timeDelayLocalisers.bearingLoc;
 
+import PamDetection.LocContents;
 import pamMaths.PamVector;
 
 public class CombinedBearingLocaliser implements BearingLocaliser {
@@ -23,6 +24,11 @@ public class CombinedBearingLocaliser implements BearingLocaliser {
 		firstSimplexStep[0] = firstSimplexStep[1] = Math.PI/180.;
 	}
 
+	@Override
+	public int getLocalisationContents() {
+		return LocContents.HAS_BEARING | LocContents.HAS_AMBIGUITY;
+	}
+
 	@Override
 	public void prepare(int[] arrayElements, long timeMillis, double timingError) {
 		firstLocaliser.prepare(arrayElements, timeMillis, timingError);

src/Localiser/algorithms/timeDelayLocalisers/bearingLoc/LSQBearingLocaliser.java

@@ -5,6 +5,7 @@ import Array.PamArray;
 import Jama.LUDecomposition;
 import Jama.Matrix;
 import Jama.QRDecomposition;
+import PamDetection.LocContents;
 import PamUtils.PamUtils;
 import pamMaths.PamVector;
 
@@ -30,6 +31,11 @@ public class LSQBearingLocaliser implements BearingLocaliser {
 		this.timingError = timingError;
 	}
 
+	@Override
+	public int getLocalisationContents() {
+		return LocContents.HAS_BEARING | LocContents.HAS_AMBIGUITY;
+	}
+	
 	@Override
 	public void prepare(int[] arrayElements, long timeMillis, double timingError) {
 		/*

src/Localiser/algorithms/timeDelayLocalisers/bearingLoc/MLGridBearingLocaliser.java

@@ -6,6 +6,7 @@ import Array.ArrayManager;
 import Array.PamArray;
 import Jama.Matrix;
 import Localiser.algorithms.Correlations;
+import PamDetection.LocContents;
 import PamUtils.ArrayDump;
 import PamUtils.PamUtils;
 import PamUtils.SystemTiming;
@@ -60,6 +61,11 @@ public class MLGridBearingLocaliser implements BearingLocaliser {
 	public void prepare(int[] arrayElements, long timMillis, double timingError) {
 		prepare(arrayElements, timMillis, timingError, Math.toRadians(1), Math.toRadians(1));
 	}
+
+	@Override
+	public int getLocalisationContents() {
+		return LocContents.HAS_BEARING | LocContents.HAS_AMBIGUITY;
+	}
 	
 	synchronized private void prepare(int[] arrayElements, long timeMillis, double timingError, double thetaStep, double phiStep) {
 		this.timingError = timingError;

src/Localiser/algorithms/timeDelayLocalisers/bearingLoc/MLGridBearingLocaliser2.java

@@ -8,6 +8,7 @@ import Jama.Matrix;
 import Localiser.algorithms.Correlations;
 import Localiser.algorithms.PeakPosition2D;
 import Localiser.algorithms.PeakSearch;
+import PamDetection.LocContents;
 import PamUtils.ArrayDump;
 import PamUtils.PamUtils;
 import PamUtils.SystemTiming;
@@ -72,6 +73,11 @@ public class MLGridBearingLocaliser2 implements BearingLocaliser {
 		this.useDefaults=true;
 		prepare(arrayElements, timMillis, timingError, Math.toRadians(3), Math.toRadians(3));
 	}
+
+	@Override
+	public int getLocalisationContents() {
+		return LocContents.HAS_BEARING | LocContents.HAS_AMBIGUITY;
+	}
 	
 	synchronized private void prepare(int[] arrayElements, long timeMillis, double timingError, double thetaStep, double phiStep) {
 		this.timingError = timingError;

src/Localiser/algorithms/timeDelayLocalisers/bearingLoc/MLLineBearingLocaliser2.java

@@ -3,6 +3,8 @@
  */
 package Localiser.algorithms.timeDelayLocalisers.bearingLoc;
 
+import PamDetection.LocContents;
+
 /**
  * @author dg50
  *
@@ -19,6 +21,11 @@ public class MLLineBearingLocaliser2 extends MLGridBearingLocaliser2 {
 		// TODO Auto-generated constructor stub
 	}
 
+	@Override
+	public int getLocalisationContents() {
+		return LocContents.HAS_BEARING | LocContents.HAS_AMBIGUITY | LocContents.HAS_AMBIGUITY;
+	}
+	
 	/**
 	 * Convert a bin into an angle. 
 	 * @param bin bin index

src/Localiser/algorithms/timeDelayLocalisers/bearingLoc/PairBearingLocaliser.java

@@ -6,6 +6,7 @@ import Array.ArrayManager;
 import Array.PamArray;
 import Jama.Matrix;
 import Jama.QRDecomposition;
+import PamDetection.LocContents;
 import PamUtils.PamUtils;
 import pamMaths.PamVector;
 
@@ -17,111 +18,111 @@ import pamMaths.PamVector;
  */
 public class PairBearingLocaliser implements BearingLocaliser {
 
-	public class LSQBearingLocaliser implements BearingLocaliser {
+//	public class LSQBearingLocaliser implements BearingLocaliser {
-	
+//	
-		private int hydrophoneBitMap;
+//		private int hydrophoneBitMap;
-		private long timeMillis;
+//		private long timeMillis;
-		private double timingError;
+//		private double timingError;
-		
+//		
-		private Matrix hydrophoneVectors, hydrophoneUnitVectors;
+//		private Matrix hydrophoneVectors, hydrophoneUnitVectors;
-		private double[] hydrophoneSpacing;
+//		private double[] hydrophoneSpacing;
-		private PamArray currentArray;
+//		private PamArray currentArray;
-		private int arrayType;
+//		private int arrayType;
-		private PamVector[] arrayAxis;
+//		private PamVector[] arrayAxis;
-	//	private LUDecomposition luHydrophoneUnitMatrix;
+//	//	private LUDecomposition luHydrophoneUnitMatrix;
-		private QRDecomposition qrHydrophones;
+//		private QRDecomposition qrHydrophones;
-	
+//	
-		public LSQBearingLocaliser(int hydrophoneBitMap, long timeMillis, double timingError) {
+//		public LSQBearingLocaliser(int hydrophoneBitMap, long timeMillis, double timingError) {
-			this.hydrophoneBitMap = hydrophoneBitMap;
+//			this.hydrophoneBitMap = hydrophoneBitMap;
-			this.timeMillis = timeMillis;
+//			this.timeMillis = timeMillis;
-			this.timingError = timingError;
+//			this.timingError = timingError;
-		}
+//		}
-	
+//	
-		@Override
+//		@Override
-		public void prepare(int[] arrayElements, long timeMillis, double timingError) {
+//		public void prepare(int[] arrayElements, long timeMillis, double timingError) {
-			/*
+//			/*
-			 * Set up the matrixes of inter hydrophone vectors. 
+//			 * Set up the matrixes of inter hydrophone vectors. 
-			 */
+//			 */
-	
+//	
-			hydrophoneBitMap = PamUtils.makeChannelMap(arrayElements); 
+//			hydrophoneBitMap = PamUtils.makeChannelMap(arrayElements); 
-			ArrayManager arrayManager = ArrayManager.getArrayManager();
+//			ArrayManager arrayManager = ArrayManager.getArrayManager();
-			currentArray = arrayManager.getCurrentArray();
+//			currentArray = arrayManager.getCurrentArray();
-			arrayType = arrayManager.getArrayShape(currentArray, hydrophoneBitMap);
+//			arrayType = arrayManager.getArrayShape(currentArray, hydrophoneBitMap);
-	
+//	
-			arrayAxis = arrayManager.getArrayDirections(currentArray, hydrophoneBitMap);
+//			arrayAxis = arrayManager.getArrayDirections(currentArray, hydrophoneBitMap);
-			
+//			
-			int nHyd = arrayElements.length;
+//			int nHyd = arrayElements.length;
-			int nDelay = (nHyd*(nHyd-1))/2;
+//			int nDelay = (nHyd*(nHyd-1))/2;
-			hydrophoneVectors = new Matrix(nDelay, 3);
+//			hydrophoneVectors = new Matrix(nDelay, 3);
-			hydrophoneUnitVectors = new Matrix(nDelay, 3);
+//			hydrophoneUnitVectors = new Matrix(nDelay, 3);
-			hydrophoneSpacing = new double[nDelay];
+//			hydrophoneSpacing = new double[nDelay];
-			int iRow = 0;
+//			int iRow = 0;
-			for (int i = 0; i < nHyd; i++) {
+//			for (int i = 0; i < nHyd; i++) {
-				PamVector vi = currentArray.getAbsHydrophoneVector(i, timeMillis);
+//				PamVector vi = currentArray.getAbsHydrophoneVector(i, timeMillis);
-				for (int j = i+1; j <nHyd; j++) {
+//				for (int j = i+1; j <nHyd; j++) {
-					PamVector vj = currentArray.getAbsHydrophoneVector(j, timeMillis);
+//					PamVector vj = currentArray.getAbsHydrophoneVector(j, timeMillis);
-					PamVector v = vj.sub(vi);
+//					PamVector v = vj.sub(vi);
-					hydrophoneSpacing[iRow] = v.norm();
+//					hydrophoneSpacing[iRow] = v.norm();
-					PamVector uv = v.getUnitVector();
+//					PamVector uv = v.getUnitVector();
-					for (int e = 0; e < 3; e++) {
+//					for (int e = 0; e < 3; e++) {
-						hydrophoneVectors.set(iRow, e, v.getElement(e));
+//						hydrophoneVectors.set(iRow, e, v.getElement(e));
-						hydrophoneUnitVectors.set(iRow, e, uv.getElement(e));
+//						hydrophoneUnitVectors.set(iRow, e, uv.getElement(e));
-					}
+//					}
-					iRow++;
+//					iRow++;
-				}
+//				}
-			}
+//			}
-	//		luHydrophoneUnitMatrix = new LUDecomposition(hydrophoneUnitVectors);
+//	//		luHydrophoneUnitMatrix = new LUDecomposition(hydrophoneUnitVectors);
-			qrHydrophones = new QRDecomposition(hydrophoneUnitVectors);
+//			qrHydrophones = new QRDecomposition(hydrophoneUnitVectors);
-		}
+//		}
-	
+//	
-		@Override
+//		@Override
-		public int getArrayType() {
+//		public int getArrayType() {
-			return arrayType;
+//			return arrayType;
-		}
+//		}
-	
+//	
-		@Override
+//		@Override
-		public int getHydrophoneMap() {
+//		public int getHydrophoneMap() {
-			return hydrophoneBitMap;
+//			return hydrophoneBitMap;
-		}
+//		}
-	
+//	
-		@Override
+//		@Override
-		public PamVector[] getArrayAxis() {
+//		public PamVector[] getArrayAxis() {
-			return arrayAxis;
+//			return arrayAxis;
-		}	 
+//		}	 
-		
+//		
-		/* 
+//		/* 
-		 * @return true if a new grid needs to be created
+//		 * @return true if a new grid needs to be created
-		 */
+//		 */
-		private boolean resetArray(long timeMillis){
+//		private boolean resetArray(long timeMillis){
-			
+//			
-			if (currentArray == null || (this.timeMillis!=timeMillis && currentArray.getHydrophoneLocator().isChangeable())){
+//			if (currentArray == null || (this.timeMillis!=timeMillis && currentArray.getHydrophoneLocator().isChangeable())){
-				prepare(PamUtils.getChannelArray(hydrophoneBitMap), timeMillis, 1e-6);
+//				prepare(PamUtils.getChannelArray(hydrophoneBitMap), timeMillis, 1e-6);
-				this.timeMillis = timeMillis;
+//				this.timeMillis = timeMillis;
-				return true;
+//				return true;
-			}
+//			}
-				
+//				
-			return false; 
+//			return false; 
-		}
+//		}
-	
+//	
-		@Override
+//		@Override
-		public double[][] localise(double[] delays, long timeMillis) {
+//		public double[][] localise(double[] delays, long timeMillis) {
-			resetArray(timeMillis);
+//			resetArray(timeMillis);
-			Matrix normDelays = new Matrix(delays.length, 1);
+//			Matrix normDelays = new Matrix(delays.length, 1);
-			double c = currentArray.getSpeedOfSound();
+//			double c = currentArray.getSpeedOfSound();
-			for (int i = 0; i < delays.length; i++) {
+//			for (int i = 0; i < delays.length; i++) {
-				normDelays.set(i, 0, -delays[i]*c/hydrophoneSpacing[i]);
+//				normDelays.set(i, 0, -delays[i]*c/hydrophoneSpacing[i]);
-			}
+//			}
-	//		Matrix soln = luHydrophoneUnitMatrix.solve(normDelays);
+//	//		Matrix soln = luHydrophoneUnitMatrix.solve(normDelays);
-			Matrix soln2 = qrHydrophones.solve(normDelays);
+//			Matrix soln2 = qrHydrophones.solve(normDelays);
-			double[][] angs = new double[2][2];
+//			double[][] angs = new double[2][2];
-			PamVector v = new PamVector(soln2.get(0, 0), soln2.get(1,0), soln2.get(2, 0));
+//			PamVector v = new PamVector(soln2.get(0, 0), soln2.get(1,0), soln2.get(2, 0));
-			double m = v.normalise();
+//			double m = v.normalise();
-			angs[0][0] = Math.PI/2. - Math.atan2(v.getElement(0),v.getElement(1));
+//			angs[0][0] = Math.PI/2. - Math.atan2(v.getElement(0),v.getElement(1));
-			angs[0][1] = Math.asin(v.getElement(2));
+//			angs[0][1] = Math.asin(v.getElement(2));
-			return angs;
+//			return angs;
-		}
+//		}
-	
+//	
-	}
+//	}
 
 	private int[] phoneNumbers;
 	
@@ -206,6 +207,11 @@ public class PairBearingLocaliser implements BearingLocaliser {
 	}
 	
 	
+	@Override
+	public int getLocalisationContents() {
+		return LocContents.HAS_BEARING | LocContents.HAS_AMBIGUITY | LocContents.HAS_AMBIGUITY;
+	}
+
 	/**
 	 * Some hydrophone locators have arrays which change with time. In this case the ML grid localiser will need to recalculate the look up table for localised ppositions
 	 * 

src/Localiser/algorithms/timeDelayLocalisers/bearingLoc/SimplexBearingLocaliser.java

@@ -14,6 +14,7 @@ import Array.ArrayManager;
 import Array.PamArray;
 import Jama.Matrix;
 import Jama.QRDecomposition;
+import PamDetection.LocContents;
 import PamUtils.PamUtils;
 import pamMaths.PamVector;
 
@@ -39,6 +40,11 @@ public class SimplexBearingLocaliser implements BearingLocaliser {
 		this.timingError = timingError;
 	}
 
+	@Override
+	public int getLocalisationContents() {
+		return LocContents.HAS_BEARING | LocContents.HAS_AMBIGUITY;
+	}
+
 	@Override
 	public void prepare(int[] arrayElements, long timeMillis, double timingError) {
 		/*

src/PamDetection/LocContents.java

@@ -10,6 +10,7 @@ package PamDetection;
 public class LocContents implements LocalisationInfo {
 	
 	/**Flags for what type of 'Raw' localisation information from a detection**/
+	
 
 	/**
 	 * Time delays are present 
@@ -78,8 +79,47 @@ public class LocContents implements LocalisationInfo {
 	/**
 	 * Errors parallel and perpendicular to the ships track.
 	 */
-	static public final int HAS_PERPENDICULARERRORS = 0x100;
+	static public final int HAS_PERPENDICULARERRORS = 0x1000;
+
+	static public final int[] allTypes = {HAS_TIMEDELAYS, HAS_ECHO, HAS_BEARING, HAS_BEARINGERROR, HAS_RANGE, HAS_RANGEERROR, HAS_DEPTH, HAS_DEPTHERROR, 
+			HAS_LATLONG, HAS_XY, HAS_XYZ, HAS_AMBIGUITY, HAS_PERPENDICULARERRORS};
 	
+	/**
+	 * Main types of interest. 
+	 */
+	static public final int[] mainTypes = {HAS_BEARING, HAS_RANGE, HAS_DEPTH, HAS_LATLONG, HAS_XY, HAS_XYZ};
+	
+	public static String getTypeString(int type) {
+		switch (type) {
+		case HAS_TIMEDELAYS:
+			return "Time delays";
+		case HAS_ECHO:
+			return "Echoes";
+		case HAS_BEARING:
+			return "Bearing";
+		case HAS_BEARINGERROR:
+			return "Bearing Error";
+		case HAS_RANGE:
+			return "Range";
+		case HAS_DEPTH:
+			return "Depth";
+		case HAS_RANGEERROR:
+			return "Range Error";
+		case HAS_DEPTHERROR:
+			return "Depth Error";
+		case HAS_LATLONG:
+			return "Lat Long";
+		case HAS_XY:
+			return "XY";
+		case HAS_XYZ:
+			return "XYZ";
+		case HAS_AMBIGUITY:
+			return "Ambiguity";
+		case HAS_PERPENDICULARERRORS:
+			return "Perpendicular Errors";
+		}
+		return null;
+	}
 	
 	/**
 	 * bitmap of flags saying what's in the localisation information

src/PamModel/PamModuleInfo.java

@@ -234,6 +234,8 @@ public class PamModuleInfo implements PamDependent{
 //		Class[] paramList = new Class[1];
 //		paramList[0] = unitName.getClass();
 		boolean error = false;
+		long tic = System.currentTimeMillis();
+		long toc = tic;
 		try {
 			Constructor constructor = moduleClass.getConstructor(constrParams1);
 			newUnit = (PamControlledUnit) constructor.newInstance(pamConfiguration, unitName);
@@ -262,6 +264,11 @@ public class PamModuleInfo implements PamDependent{
 				return null;
 			}
 		}
+		toc = System.currentTimeMillis();
+		if (toc-tic > 1000) {
+			System.out.printf("Module %s-%s was slow to load, taking %3.1f seconds\n", newUnit.getUnitType(), 
+					newUnit.getUnitName(), (double)(toc-tic)/1000.);
+		}
 
 		setNInstances(nInstances + 1);
 				

src/RightWhaleEdgeDetector/RWEProcess.java

@@ -62,7 +62,7 @@ public class RWEProcess extends PamProcess {
 		this.rweControl = rweControl;
 		rweDataBlock = new RWEDataBlock(rweControl, rweControl.getUnitName(), this, 0);
 		addOutputDataBlock(rweDataBlock);
-		rweDataBlock.setLocalisationContents(LocContents.HAS_BEARING);
+//		rweDataBlock.setLocalisationContents(LocContents.HAS_BEARING);
 		rweDataBlock.setDatagramProvider(new RWEDatagramProvider());
 		rweDataBlock.setOverlayDraw(new RWEOverlayGraphics(this, rweDataBlock));
 		StandardSymbolManager symbolManager = symbolManager = new RWESymbolManager(rweDataBlock, RWEOverlayGraphics.defaultSymbol, true);
@@ -138,6 +138,11 @@ public class RWEProcess extends PamProcess {
 				rweChannelProcesses[i] = new RWEChannelProcess(this, i);
 			}
 		}
+		int nChan = PamUtils.getNumChannels(channelMap);
+		if (nChan > 1) {
+			// really needs properly setting up with channel groups 
+			rweDataBlock.setLocalisationContents(LocContents.HAS_BEARING);
+		}
 //		checkBearingLocaliser(sourceDataBlock.getChannelMap());
 	}
 	
@@ -433,6 +438,7 @@ public class RWEProcess extends PamProcess {
 		int hydrophoneMap = sourceDataBlock.getChannelListManager().channelIndexesToPhones(chanMap);
 		return findBearingLocaliser(hydrophoneMap);
 	}
+	
 	private synchronized BearingLocaliser findBearingLocaliser(int hydrophoneMap) {
 		int nPhones = PamUtils.getNumChannels(hydrophoneMap);
 		if (nPhones < 2) {

src/Spectrogram/SpectrogramDisplay.java

@@ -132,6 +132,7 @@ import PamguardMVC.PamProcess;
 import PamguardMVC.PamRawDataBlock;
 import PamguardMVC.SimpleDataObserver;
 import PamguardMVC.dataOffline.OfflineDataLoading;
+import PamguardMVC.dataSelector.DataSelectParams;
 import PamguardMVC.dataSelector.DataSelector;
 import dataPlotsFX.data.DataTypeInfo;
 import fftManager.FFTDataBlock;
@@ -2927,6 +2928,10 @@ InternalFrameListener, DisplayPanelContainer, SpectrogramParametersUser, PamSett
 			//							PamCalendar.formatTime(currentTimeMilliseconds)));
 			String name = spectrogramDisplay.getDataSelectorName(panelId);
 			DataSelector dataSelector = usedDataBlock.getDataSelector(name, false);
+			
+			if (dataSelector.getParams().getCombinationFlag() == DataSelectParams.DATA_SELECT_DISABLE) {
+				dataSelector = null;
+			}
 			directDrawProjector.setDataSelector(dataSelector);
 			if (usedDataBlock.getPamSymbolManager() != null) {
 				directDrawProjector.setPamSymbolChooser(usedDataBlock.getPamSymbolManager().getSymbolChooser(name, directDrawProjector));

src/asiojni/AsioDriverInfos.java

@@ -25,7 +25,15 @@ public class AsioDriverInfos {
 		
 	}
 	
+	/**
+	 * Gets called back from the jni call to callJniGetAsioDrivers
+	 * @param driverName
+	 * @param maxChannels
+	 * @param sampleRateInfo
+	 */
 	public void addDriverToList(String driverName, int[] maxChannels, int[]sampleRateInfo){
+		lastDriverEnumeration = System.currentTimeMillis();
+		System.out.printf("Getting driver detail for ASIO %s took %3.1fs\n", driverName, (double) (lastDriverEnumeration-driverEnumerationStart)/1000.);
 		ArrayList<Integer>sampleRates = new ArrayList<Integer>();
 		ArrayList<Integer>maxAvailableChannels = new ArrayList<Integer>();
 		for(int i = 0;i<sampleRateInfo.length;i++){
@@ -34,30 +42,44 @@ public class AsioDriverInfos {
 		}		
 		AsioDriverInfo asioDriverInfo = new AsioDriverInfo(driverName, maxAvailableChannels,sampleRates);
 		asioDriverList.add(asioDriverInfo);
+		driverEnumerationStart = System.currentTimeMillis();
 	}
 
+	long driverEnumerationStart;
+	long lastDriverEnumeration;
 	private ArrayList<AsioDriverInfo> getAsioDriverList() {
 		clearDriverList();
+		long t1 = System.currentTimeMillis();
+		driverEnumerationStart = t1;
 		asioJniInterface.callJniGetAsioDrivers(this);
+		long t2 = System.currentTimeMillis();
+		System.out.printf("Call to asioJniInterface.callJniGetAsioDrivers took %3.1fs\n", (double) (t2-t1)/1000.);
+		
 		for(int i = 0; i<asioDriverList.size();i++){
 			System.out.printf("ASIO drivers: " + asioDriverList.get(i).driverName + "  maxChannels: " + asioDriverList.get(i).maxChannels + " Can sample at ");
+			long tic = System.currentTimeMillis();
 			boolean firstHz = true;
-				for(int j = 0;j<asioDriverList.get(i).sampleRateInfo.size();j++){
+			for(int j = 0;j<asioDriverList.get(i).sampleRateInfo.size();j++){
-					if (firstHz == false) {
+				if (firstHz == false) {
-						System.out.printf(", ");
+					System.out.printf(", ");
-					}
-					else {
-						
-					}
-					System.out.printf("%d", asioDriverList.get(i).sampleRateInfo.get(j));
-					firstHz = false;
 				}
-				System.out.printf(" Hz\n");
+				else {
+
+				}
+				System.out.printf("%d", asioDriverList.get(i).sampleRateInfo.get(j));
+				firstHz = false;
 			}
-//			System.out.println();
+			System.out.printf(" Hz\n");
-//			System.out.println("Java:: just called asioJniInterface.callJniGetAsioDrivers(this);");
+			long toc = System.currentTimeMillis();
-//			System.out.flush();
+			if (toc-tic > 1000) {
-		
+				System.out.printf("Checking cababilities for ASIO %s took %3.1fs\n", asioDriverList.get(i).driverName, 
+						(double) (toc-tic)/1000.);
+			}
+		}
+		//			System.out.println();
+		//			System.out.println("Java:: just called asioJniInterface.callJniGetAsioDrivers(this);");
+		//			System.out.flush();
+
 		return asioDriverList;
 	}
 
@@ -65,11 +87,14 @@ public class AsioDriverInfos {
 //		System.out.println("getCurrentAsioDriverList():: asioDriverList.size()=" + asioDriverList.size());
 //		System.out.flush();
 		if(asioDriverList.size()==0){
-			return asioDriverList = getAsioDriverList();
+			long tic = System.currentTimeMillis();
-		}
+			asioDriverList = getAsioDriverList();
-		else{
+			long toc = System.currentTimeMillis();
-			return asioDriverList;
+			if (toc-tic>1000) {
+				System.out.printf("Enumerating ASIO driver list took %3.1fs\n", (double)(toc-tic)/1000.);
+			}
 		}
+		return asioDriverList;
 		
 	}
 	

src/clickDetector/ClickDetector.java

@@ -312,19 +312,19 @@ public class ClickDetector extends PamProcess {
 		offlineEventDataBlock.SetLogging(offlineEventLogging);
 		targetMotionSQLLogging = new TargetMotionSQLLogging(2);
 		offlineEventLogging.addAddOn(targetMotionSQLLogging);
-		if (isViewer) {
+//		if (isViewer) {
-			// offlineEventDataBlock = new
+//			// offlineEventDataBlock = new
-			// OfflineEventDataBlock(clickControl.getUnitName()+"_OfflineEvents",
+//			// OfflineEventDataBlock(clickControl.getUnitName()+"_OfflineEvents",
-			// this, 0);
+//			// this, 0);
-			// offlineEventLogging = new OfflineEventLogging(clickControl,
+//			// offlineEventLogging = new OfflineEventLogging(clickControl,
-			// offlineEventDataBlock);
+//			// offlineEventDataBlock);
-			// targetMotionSQLLogging = new TargetMotionSQLLogging(2);
+//			// targetMotionSQLLogging = new TargetMotionSQLLogging(2);
-			// offlineEventLogging.addAddOn(targetMotionSQLLogging);
+//			// offlineEventLogging.addAddOn(targetMotionSQLLogging);
-			// offlineEventDataBlock.SetLogging(offlineEventLogging);
+//			// offlineEventDataBlock.SetLogging(offlineEventLogging);
-		} else { // for normal and mixed mode.
+//		} else { // for normal and mixed mode.
 			offlineEventDataBlock.setLocalisationContents(LocContents.HAS_BEARING | LocContents.HAS_RANGE
 					| LocContents.HAS_LATLONG | LocContents.HAS_AMBIGUITY | LocContents.HAS_PERPENDICULARERRORS);
-		}
+//		}
 		// set up the subtable for the Event Logger, and force creation
 		offlineEventLogging.setSubLogging(getClickDataBlock().getOfflineClickLogging());
 
@@ -458,6 +458,8 @@ public class ClickDetector extends PamProcess {
 			nChannelGroups = GroupedSourcePanel.countChannelGroups(cp.getChannelBitmap(), cp.getChannelGroups());
 			int groupChannels;
 			channelGroupDetectors = new ChannelGroupDetector[nChannelGroups];
+			
+			int locContents = 0;
 			for (int i = 0; i < nChannelGroups; i++) {
 				groupChannels = GroupedSourcePanel.getGroupChannels(i, cp.getChannelBitmap(), cp.getChannelGroups());
 				channelGroupDetectors[i] = new ChannelGroupDetector(i, groupChannels);
@@ -467,9 +469,21 @@ public class ClickDetector extends PamProcess {
 				if (multiThread) {
 					channelGroupDetectors[i].halfBuiltClicks.addObserver(newClickMonitor, true);
 				}
+				if (channelGroupDetectors[i].bearingLocaliser != null) {
+					locContents |= channelGroupDetectors[i].bearingLocaliser.getLocalisationContents();
+				}
 				// System.out.println("Group " + i + " contains channels list " +
 				// groupChannels);
 			}
+			outputClickData.setLocalisationContents(locContents);
+			if (locContents == 0) {
+				offlineEventDataBlock.setLocalisationContents(0);
+			}
+			else {
+				int eventLocCont = LocContents.HAS_LATLONG | LocContents.HAS_XYZ | LocContents.HAS_RANGE;
+				eventLocCont |= (locContents & LocContents.HAS_AMBIGUITY);
+				offlineEventDataBlock.setLocalisationContents(eventLocCont);
+			}
 
 			globalChannelList = new int[nChan = PamUtils
 					.getNumChannels(clickControl.clickParameters.getChannelBitmap())];

src/clickDetector/tethys/ClickEventTethysDataProvider.java

@@ -27,6 +27,7 @@ public class ClickEventTethysDataProvider extends AutoTethysProvider {
 
 	@Override
 	public GranularityEnumType[] getAllowedGranularities() {
+		// these are by definition grouped. 
 		GranularityEnumType[] allowed = {GranularityEnumType.GROUPED};
 		return allowed;
 	}
@@ -59,14 +60,19 @@ public class ClickEventTethysDataProvider extends AutoTethysProvider {
 		addUserDefined(params, numName, number.toString());
 	}
 
+//	@Override
+//	public boolean wantExportDialogCard(ExportWizardCard wizPanel) {
+////		if (wizPanel.getClass() == GranularityCard.class) {
+////			return false;
+////		}
+////		else {
+//			return true;
+////		}
+//	}
+
 	@Override
-	public boolean wantExportDialogCard(ExportWizardCard wizPanel) {
+	public boolean granularityOK(GranularityEnumType granularityType) {
-		if (wizPanel.getClass() == GranularityCard.class) {
+		return true;
-			return false;
-		}
-		else {
-			return true;
-		}
 	}
 
 }

src/tethys/detection/DetectionsHandler.java

@@ -26,6 +26,7 @@ import dataMap.OfflineDataMap;
 import dataMap.OfflineDataMapPoint;
 import nilus.AlgorithmType;
 import nilus.AlgorithmType.SupportSoftware;
+import nilus.Localize.Localizations;
 import nilus.DataSourceType;
 import nilus.Deployment;
 import nilus.Detection;
@@ -380,8 +381,10 @@ public class DetectionsHandler extends CollectionHandler {
 		}
 
 		return exportCount;
-	}/**
+	}
-	 * Export detections in all deployments for this PAMGuard dataset.
+	
+	/**
+	 * Export detections and localisations in all deployments for this PAMGuard dataset.
 	 * @param dataBlock
 	 * @param streamExportParams
 	 * @param exportObserver
@@ -396,7 +399,14 @@ public class DetectionsHandler extends CollectionHandler {
 		DBXMLConnect dbxmlConnect = tethysControl.getDbxmlConnect();
 		DeploymentHandler depHandler = tethysControl.getDeploymentHandler();
 		ArrayList<PDeployment> deployments = depHandler.getMatchedDeployments();
-		Detections currentDetections = null;
+		
+		/*
+		 * The main documents for both dets and locs. 
+		 */
+		Detections detectionsDocument = null;
+		Localizations localisationsDocument = null;
+		DetectionGroup onEffortDetections = null;
+		
 		OfflineDataMap dataMap = dataBlock.getPrimaryDataMap();
 		DataSelector dataSelector = dataBlock.getDataSelector(tethysControl.getDataSelectName(), false);
 		int totalCount = dataMap.getDataCount();
@@ -427,16 +437,23 @@ public class DetectionsHandler extends CollectionHandler {
 			List<OfflineDataMapPoint> mapPoints = dataMap.getMapPoints();
 			for (OfflineDataMapPoint mapPoint : mapPoints) {
 				if (!activeExport) {
-					prog = new DetectionExportProgress(deployment, currentDetections,totalMapPoints, doneMapPoints,
+					prog = new DetectionExportProgress(deployment, detectionsDocument,totalMapPoints, doneMapPoints,
 							lastUnitTime, totalCount, exportCount, skipCount, DetectionExportProgress.STATE_CANCELED);
 					exportObserver.update(prog);
 					break;
 				}
 
-				if (currentDetections == null) {
+				if (detectionsDocument == null && streamExportParams.exportDetections) {
 					// needed in inner loop in case doc gets written at 500000.
-					currentDetections = startDetectionsDocument(deployment, dataBlock, streamExportParams);
+					detectionsDocument = startDetectionsDocument(deployment, dataBlock, streamExportParams);
-					currentDetections.getEffort().setStart(TethysTimeFuncs.xmlGregCalFromMillis(deployment.getAudioStart()));
+					detectionsDocument.getEffort().setStart(TethysTimeFuncs.xmlGregCalFromMillis(deployment.getAudioStart()));
+					onEffortDetections = detectionsDocument.getOnEffort();
+				}
+				else {
+					onEffortDetections = null;
+				}
+				if (localisationsDocument == null && streamExportParams.exportLocalisations) {
+					localisationsDocument = startLocalisationDocument(deployment, dataBlock, streamExportParams);
 				}
 				
 				if (mapPoint.getEndTime() < deployment.getAudioStart()) {
@@ -449,7 +466,6 @@ public class DetectionsHandler extends CollectionHandler {
 				ArrayList<PamDataUnit> dataCopy = dataBlock.getDataCopy(deployment.getAudioStart(), deployment.getAudioEnd(), true, dataSelector);
 				Collections.sort(dataCopy);
 				skipCount += dataBlock.getUnitsCount() - dataCopy.size();
-				DetectionGroup onEffort = currentDetections.getOnEffort();
 				for (PamDataUnit dataUnit : dataCopy) {
 					/*
 					 * Here is where we need to handle the different granularities.
@@ -459,11 +475,13 @@ public class DetectionsHandler extends CollectionHandler {
 						for (int dd = 0; dd < dets.length; dd++) {
 							exportCount++;
 							documentCount++;
-							onEffort.getDetection().add(dets[dd]);
+							if (streamExportParams.exportDetections) {
+								onEffortDetections.getDetection().add(dets[dd]);
+							}
 						}
 					}
 					if (exportCount % 100 == 0) {
-						prog = new DetectionExportProgress(deployment, currentDetections, totalMapPoints, doneMapPoints,
+						prog = new DetectionExportProgress(deployment, detectionsDocument, totalMapPoints, doneMapPoints,
 								lastUnitTime, totalCount, exportCount, skipCount, DetectionExportProgress.STATE_GATHERING);
 						exportObserver.update(prog);
 					}
@@ -471,23 +489,25 @@ public class DetectionsHandler extends CollectionHandler {
 				}
 
 				doneMapPoints ++;
-				prog = new DetectionExportProgress(deployment, currentDetections,totalMapPoints, doneMapPoints,
+				prog = new DetectionExportProgress(deployment, detectionsDocument,totalMapPoints, doneMapPoints,
 						lastUnitTime, totalCount, exportCount, skipCount, DetectionExportProgress.STATE_GATHERING);
 				exportObserver.update(prog);
 
 				if (documentCount > 50000000 && mapPoint != dataMap.getLastMapPoint()) {
-					prog = new DetectionExportProgress(deployment, currentDetections,totalMapPoints, doneMapPoints,
+					prog = new DetectionExportProgress(deployment, detectionsDocument,totalMapPoints, doneMapPoints,
 							lastUnitTime, totalCount, exportCount, skipCount, DetectionExportProgress.STATE_WRITING);
 					exportObserver.update(prog);
-					closeDetectionsDocument(currentDetections, mapPoint.getEndTime());
+					if (detectionsDocument != null) {
-					try {
+						closeDetectionsDocument(detectionsDocument, mapPoint.getEndTime());
-						if (checkDetectionsDocument(currentDetections, granularityHandler)) {
+						try {
-							dbxmlConnect.postAndLog(currentDetections);
+							if (checkDetectionsDocument(detectionsDocument, granularityHandler)) {
+								dbxmlConnect.postAndLog(detectionsDocument);
+							}
+						} catch (TethysException e) {
+							tethysControl.showException(e);
 						}
-					} catch (TethysException e) {
+						detectionsDocument = null;
-						tethysControl.showException(e);
 					}
-					currentDetections = null;
 				}
 
 				if (viewerLoadPolicy == ViewerLoadPolicy.LOAD_ALWAYS_EVERYTHING) {
@@ -502,26 +522,26 @@ public class DetectionsHandler extends CollectionHandler {
 				return DetectionExportProgress.STATE_CANCELED;
 			}
 
-			if (currentDetections != null) {
+			if (detectionsDocument != null) {
 				Detection dets[] = granularityHandler.cleanup(deployment.getAudioEnd());
 				if (dets != null) {
 					for (int dd = 0; dd < dets.length; dd++) {
 						exportCount++;
 						documentCount++;
-						currentDetections.getOnEffort().getDetection().add(dets[dd]);
+						detectionsDocument.getOnEffort().getDetection().add(dets[dd]);
 					}
 				}
-				prog = new DetectionExportProgress(deployment, currentDetections,totalMapPoints, doneMapPoints,
+				prog = new DetectionExportProgress(deployment, detectionsDocument,totalMapPoints, doneMapPoints,
 						lastUnitTime, totalCount, exportCount, skipCount, DetectionExportProgress.STATE_WRITING);
-				closeDetectionsDocument(currentDetections, deployment.getAudioEnd());
+				closeDetectionsDocument(detectionsDocument, deployment.getAudioEnd());
 				try {
-					if (checkDetectionsDocument(currentDetections, granularityHandler)) {
+					if (checkDetectionsDocument(detectionsDocument, granularityHandler)) {
-						dbxmlConnect.postAndLog(currentDetections);
+						dbxmlConnect.postAndLog(detectionsDocument);
 					}
 				} catch (TethysException e) {
 					tethysControl.showException(e);
 				}
-				currentDetections = null;
+				detectionsDocument = null;
 			}
 		}
 
@@ -531,6 +551,20 @@ public class DetectionsHandler extends CollectionHandler {
 		return DetectionExportProgress.STATE_COMPLETE;
 	}
 	
+	private Localizations startLocalisationDocument(PDeployment deployment, PamDataBlock dataBlock,
+			StreamExportParams streamExportParams) {
+		Localizations localisations = new Localizations();
+		try {
+			Helper.createRequiredElements(localisations);
+		} catch (IllegalArgumentException | IllegalAccessException | InstantiationException e) {
+			e.printStackTrace();
+			return null;
+		}
+		
+		return localisations;
+	}
+
+
 	/**
 	 * Start a new detections document for the deployment and datablock. <br>
 	 * Add all the standard information to the top of the Document

src/tethys/localization/LocalizationHandler.java

@@ -1,17 +1,17 @@
 package tethys.localization;
 
-//import nilus.CylindricalCoordinateType;
+import nilus.CylindricalCoordinateType;
-//import nilus.LocalizationType;
+import nilus.LocalizationType;
-//import nilus.Localize.Effort.CoordinateReferenceSystem;
+import nilus.Localize.Effort.CoordinateReferenceSystem;
 
 public class LocalizationHandler {
 
 	
-//	public LocalizationType getLoc() {
+	public LocalizationType getLoc() {
-//		LocalizationType lt = new LocalizationType();
+		LocalizationType lt = new LocalizationType();
-//		CylindricalCoordinateType cct = new CylindricalCoordinateType();
+		CylindricalCoordinateType cct = new CylindricalCoordinateType();
-////		cct.set
+//		cct.set
-//		CoordinateReferenceSystem cr;
+		CoordinateReferenceSystem cr;
-//		return null;
+		return null;
-//	}
+	}
 }

src/tethys/localization/TethysLocalisationInfo.java

@@ -0,0 +1,40 @@
+package tethys.localization;
+
+import PamDetection.LocContents;
+import PamDetection.LocalisationInfo;
+import PamguardMVC.PamDataBlock;
+
+/**
+ * Summary of localisation info in a datablock, specific to Tethys needs. 
+ * @author dg50
+ *
+ */
+public class TethysLocalisationInfo {
+
+	private PamDataBlock pamDataBlock;
+
+	public TethysLocalisationInfo(PamDataBlock pamDataBlock) {
+		this.pamDataBlock = pamDataBlock;
+	}
+	
+	public String getLoclisationTypes() {
+		LocalisationInfo locCont = pamDataBlock.getLocalisationContents();
+		if (locCont == null || locCont.getLocContent() == 0) {
+			return null;
+		}
+		String str = null;
+		int[] mainTypes = LocContents.mainTypes;
+		for (int i = 0; i < mainTypes.length; i++) {
+			if (locCont.hasLocContent(mainTypes[i])) {
+				if (str == null) {
+					str = LocContents.getTypeString(mainTypes[i]);
+				}
+				else {
+					str += ", " + LocContents.getTypeString(mainTypes[i]);
+				}
+			}
+		}
+		return str;
+	}
+
+}

src/tethys/niluswraps/PGranularityType.java

@@ -20,7 +20,7 @@ public class PGranularityType {
 		case BINNED:
 			return "Binned";
 		case CALL:
-			return "Call";
+			return "Call / detection";
 		case ENCOUNTER:
 			return "Encounter";
 		case GROUPED:

src/tethys/output/StreamExportParams.java

@@ -26,11 +26,19 @@ public class StreamExportParams implements Serializable {
 
 	/**
 	 * Datablock long data name (used instead of datablock
-	 * reference so this object and serialise. 
+	 * reference so this object is serialise. 
 	 */
 	public String longDataName;
 	
-	public boolean selected;
+	/**
+	 * Have selected export of detections. 
+	 */
+	public boolean exportDetections;
+	
+	/**
+	 * Have selected export of localisations. 
+	 */
+	public boolean exportLocalisations;
 	
 	/**
 	 * Granularity type, binned, call, encounter, grouped. 
@@ -74,10 +82,9 @@ public class StreamExportParams implements Serializable {
 		return detectionDescription;
 	}
 
-	public StreamExportParams(TethysControl tethysControl, PamDataBlock dataBlock, boolean selected) {
+	public StreamExportParams(TethysControl tethysControl, PamDataBlock dataBlock) {
 		super();
 		this.longDataName = dataBlock.getLongDataName();
-		this.selected = selected;
 		autoFill(tethysControl, dataBlock);
 	}
 

src/tethys/pamdata/AutoTethysProvider.java

@@ -13,6 +13,7 @@ import PamController.PamControlledUnit;
 import PamController.PamSettings;
 import PamController.PamguardVersionInfo;
 import PamController.settings.output.xml.PamguardXMLWriter;
+import PamDetection.LocalisationInfo;
 import PamUtils.XMLUtils;
 import PamguardMVC.DataAutomationInfo;
 import PamguardMVC.DataUnitBaseData;
@@ -37,6 +38,7 @@ import nilus.SpeciesIDType;
 import tethys.TethysControl;
 import tethys.TethysTimeFuncs;
 import tethys.detection.DetectionsHandler;
+import tethys.localization.TethysLocalisationInfo;
 import tethys.niluswraps.PDeployment;
 import tethys.output.StreamExportParams;
 import tethys.output.TethysExportParams;
@@ -505,5 +507,41 @@ abstract public class AutoTethysProvider implements TethysDataProvider {
 		return tethysControl;
 	}
 
+	@Override
+	public boolean hasDetections() {
+		return true;
+	}
+
+	
+	@Override
+	public boolean canExportLocalisations(GranularityEnumType granularityType) {
+		LocalisationInfo locCont = pamDataBlock.getLocalisationContents();
+		if (locCont == null) {
+			return false;
+		}
+		return (locCont.getLocContent() > 0 & granularityOK(granularityType));
+	}
+
+	/**
+	 * Granularity is OK for export. 
+	 * @param granularityType
+	 * @return
+	 */
+	public boolean granularityOK(GranularityEnumType granularityType) {
+		return (granularityType == null || granularityType == GranularityEnumType.CALL);
+	}
+
+	@Override
+	public TethysLocalisationInfo getLocalisationInfo() {
+		LocalisationInfo locCont = pamDataBlock.getLocalisationContents();
+		if (locCont == null || locCont.getLocContent() == 0) {
+			return null;
+		}
+		else {
+			return new TethysLocalisationInfo(pamDataBlock);
+		}
+	}
+	
+
 
 }

src/tethys/pamdata/TethysDataProvider.java

@@ -2,6 +2,7 @@ package tethys.pamdata;
 
 import java.util.List;
 
+import PamDetection.LocalisationInfo;
 import PamguardMVC.PamDataUnit;
 import nilus.AlgorithmType;
 import nilus.AlgorithmType.Parameters;
@@ -10,6 +11,7 @@ import nilus.DescriptionType;
 import nilus.Detection;
 import nilus.DetectionEffortKind;
 import nilus.GranularityEnumType;
+import tethys.localization.TethysLocalisationInfo;
 import tethys.niluswraps.PDeployment;
 import tethys.output.StreamExportParams;
 import tethys.output.TethysExportParams;
@@ -81,7 +83,23 @@ public interface TethysDataProvider {
 	 * @return A name, similar to datablock.getLongDataName(), but no spaces. 
 	 */
 	public String getDetectionsName();
-
+	
+	/**
+	 * True if the datablock is detections. This will (nearly) always 
+	 * be true or the block wouldn't have a TethysDataProvider, however
+	 * there may be one or two localisers that should really only output
+	 * localisation information. 
+	 * @return
+	 */
+	public boolean hasDetections();
+	
+	/**
+	 * See if it's possible for this block to export localisations. This may 
+	 * depend on the selected granularity. 
+	 * @param granularityType
+	 * @return
+	 */
+	public boolean canExportLocalisations(GranularityEnumType granularityType);
 
 	/**
 	 * Create a Tethys Detection object from a PamDataUnit.<br>
@@ -120,5 +138,12 @@ public interface TethysDataProvider {
 	 */
 	public boolean wantExportDialogCard(ExportWizardCard wizPanel);
 	
+	/**
+	 * Get localisation info for the datablock. Can be null, but probably never is. More likely to have a zero of available types;
+	 * @return
+	 */
+	public TethysLocalisationInfo getLocalisationInfo();
+	
+			
 	
 }

src/tethys/swing/export/DetectionsExportWizard.java

@@ -42,7 +42,7 @@ public class DetectionsExportWizard extends PamWizard {
 		
 		streamExportParams = tethysControl.getTethysExportParams().getStreamParams(dataBlock);
 		if (streamExportParams == null) {
-			streamExportParams = new StreamExportParams(tethysControl, dataBlock, false);
+			streamExportParams = new StreamExportParams(tethysControl, dataBlock);
 		}
 		tethysDataProvider = dataBlock.getTethysDataProvider(tethysControl);
 		getMainPanel().add(BorderLayout.NORTH, new ExportStreamInfoPanel(dataBlock));

src/tethys/swing/export/GranularityCard.java

@@ -9,6 +9,7 @@ import java.awt.event.ActionListener;
 import javax.swing.BoxLayout;
 import javax.swing.ButtonGroup;
 import javax.swing.JButton;
+import javax.swing.JCheckBox;
 import javax.swing.JLabel;
 import javax.swing.JPanel;
 import javax.swing.JRadioButton;
@@ -17,9 +18,6 @@ import javax.swing.JTextArea;
 import javax.swing.JTextField;
 import javax.swing.border.TitledBorder;
 
-import org.w3c.dom.Document;
-
-import PamController.settings.output.xml.PamguardXMLWriter;
 import PamView.dialog.PamGridBagContraints;
 import PamView.panel.WestAlignedPanel;
 import PamguardMVC.PamDataBlock;
@@ -28,6 +26,7 @@ import PamguardMVC.dataSelector.DataSelector;
 import PamguardMVC.dataSelector.DataSelectorChangeListener;
 import nilus.GranularityEnumType;
 import tethys.TethysControl;
+import tethys.localization.TethysLocalisationInfo;
 import tethys.niluswraps.PGranularityType;
 import tethys.output.StreamExportParams;
 import tethys.pamdata.TethysDataProvider;
@@ -40,22 +39,51 @@ public class GranularityCard extends ExportWizardCard {
 
 	private JTextField binLength, minBinnedCalls, encounterGap, minEncounterCalls;
 	
+	private JCheckBox exportDetections, exportLocalisations;
+	
+	private JLabel localisationTypes;
+	
 	private JRadioButton groupChannels, separateChannels;
 
 	private DataSelector dataSelector;
 
 	private DetectionsExportWizard detectionsExportWizard;
 
-	private int encounterIndex, binnedIndex;
+	private int callIndex, encounterIndex, binnedIndex;
 
 	private GranularityEnumType[] allowedGranularities;
 
+	private TethysDataProvider tethysDataProvider;
+	
 	public GranularityCard(DetectionsExportWizard detectionsExportWizard, TethysControl tethysControl, PamDataBlock dataBlock) {
 		super(tethysControl, detectionsExportWizard, "Granularity", dataBlock);
 		this.detectionsExportWizard = detectionsExportWizard;
 		setLayout(new BoxLayout(this, BoxLayout.Y_AXIS));
 
-		TethysDataProvider tethysDataProvider = dataBlock.getTethysDataProvider(tethysControl);
+		tethysDataProvider = dataBlock.getTethysDataProvider(tethysControl);
+
+		GranularityChange gc = new GranularityChange();
+		
+		exportDetections = new JCheckBox("Export Detections");
+		exportLocalisations = new JCheckBox("Export Localisations");
+		exportDetections.addActionListener(gc);
+		exportLocalisations.addActionListener(gc);
+		JPanel whatPanel = new JPanel(new GridBagLayout());
+		GridBagConstraints cw = new PamGridBagContraints();
+		cw.gridwidth = 2;
+		whatPanel.add(exportDetections, cw);
+		cw.gridy++;
+		whatPanel.add(exportLocalisations, cw);
+		cw.gridwidth = 1;
+		cw.gridy++;
+		whatPanel.add(new JLabel("Loclisation types: ", JLabel.RIGHT), cw);
+		cw.gridx++;
+		whatPanel.add(localisationTypes = new JLabel("none"), cw);
+		JPanel walPanel = new WestAlignedPanel(whatPanel);
+		walPanel.setBorder(new TitledBorder("What to export"));
+		this.add(walPanel);
+		localisationTypes.setToolTipText("Not all listed localisation types may be present in actual data");
+		
 		// granularity
 		allowedGranularities = tethysDataProvider.getAllowedGranularities();
 		granularities = new JRadioButton[allowedGranularities.length];
@@ -63,7 +91,6 @@ public class GranularityCard extends ExportWizardCard {
 		GridBagConstraints c = new PamGridBagContraints();
 		granPanel.setBorder(new TitledBorder("Granularity"));
 		ButtonGroup granGroup = new ButtonGroup();
-		GranularityChange gc = new GranularityChange();
 		binLength = new JTextField(5);
 		minBinnedCalls = new JTextField(5);
 		encounterGap = new JTextField(5);
@@ -75,6 +102,9 @@ public class GranularityCard extends ExportWizardCard {
 			granularities[i].addActionListener(gc);
 			granPanel.add(granularities[i], c);
 			granGroup.add(granularities[i]);
+			if (allowedGranularities[i] == GranularityEnumType.CALL) {
+				callIndex = i;
+			}
 			if (allowedGranularities[i] == GranularityEnumType.BINNED) {
 				binnedIndex = i;
 				c.gridx++;
@@ -149,16 +179,6 @@ public class GranularityCard extends ExportWizardCard {
 
 	}
 
-	private void enableControls() {
-		binLength.setEnabled(granularities[binnedIndex].isSelected());
-		minBinnedCalls.setEnabled(granularities[binnedIndex].isSelected());
-		encounterGap.setEnabled(granularities[encounterIndex].isSelected());
-		minEncounterCalls.setEnabled(granularities[encounterIndex].isSelected());
-		boolean binOrencount = granularities[binnedIndex].isSelected() | granularities[encounterIndex].isSelected();
-		separateChannels.setEnabled(binOrencount);
-		groupChannels.setEnabled(binOrencount);
-	}
-
 	protected void newDataSelection() {
 		if (dataSelector == null) {
 			return;
@@ -177,12 +197,9 @@ public class GranularityCard extends ExportWizardCard {
 
 	@Override
 	public boolean getParams(StreamExportParams streamExportParams) {
-		for (int i = 0; i < allowedGranularities.length; i++) {
+
-			if (granularities[i].isSelected()) {
+		streamExportParams.granularity = getCurrentGranularity();
-				streamExportParams.granularity = allowedGranularities[i];
+
-				break;
-			}
-		}
 		if (streamExportParams.granularity == GranularityEnumType.BINNED) {
 			try {
 				streamExportParams.binDurationS = Double.valueOf(binLength.getText());
@@ -214,22 +231,87 @@ public class GranularityCard extends ExportWizardCard {
 
 		streamExportParams.separateChannels = separateChannels.isSelected();
 		
+		streamExportParams.exportDetections = exportDetections.isSelected();
+		
+		streamExportParams.exportLocalisations = exportLocalisations.isSelected();
+		
+		if (streamExportParams.exportDetections == false && streamExportParams.exportLocalisations == false) {
+			return detectionsExportWizard.showWarning("You must select Detections or Localisations for export");
+		}
+		
 		return streamExportParams.granularity != null;
 	}
 
-	@Override
+	private GranularityEnumType getCurrentGranularity() {
-	public void setParams(StreamExportParams streamExportParams) {
+		for (int i = 0; i < allowedGranularities.length; i++) {
-		for (int i = 0; i < granularities.length; i++) {
+			if (granularities[i].isSelected()) {
-			granularities[i].setSelected(streamExportParams.granularity == allowedGranularities[i]);
+				return allowedGranularities[i];
+			}
 		}
-		binLength.setText(String.format("%3.1f", streamExportParams.binDurationS));
+		return null;
-		minBinnedCalls.setText(String.format("%d", streamExportParams.minBinCount));
+	}
-		encounterGap.setText(String.format("%3.1f", streamExportParams.encounterGapS));
+
-		minEncounterCalls.setText(String.format("%d", streamExportParams.minEncounterCount));
+	@Override
-		separateChannels.setSelected(streamExportParams.separateChannels);
+		public void setParams(StreamExportParams streamExportParams) {
-		groupChannels.setSelected(streamExportParams.separateChannels == false);
+			for (int i = 0; i < granularities.length; i++) {
-		newDataSelection();
+				granularities[i].setSelected(streamExportParams.granularity == allowedGranularities[i]);
-		enableControls();
+			}
+			binLength.setText(String.format("%3.1f", streamExportParams.binDurationS));
+			minBinnedCalls.setText(String.format("%d", streamExportParams.minBinCount));
+			encounterGap.setText(String.format("%3.1f", streamExportParams.encounterGapS));
+			minEncounterCalls.setText(String.format("%d", streamExportParams.minEncounterCount));
+			separateChannels.setSelected(streamExportParams.separateChannels);
+			groupChannels.setSelected(streamExportParams.separateChannels == false);
+			String locStr = getLocInfString();
+			if (locStr == null) {
+				localisationTypes.setText("none");
+	//			exportDetections.setSelected(true);
+				exportLocalisations.setSelected(false);
+			}
+			else {
+				localisationTypes.setText(locStr);
+			}
+			
+			exportDetections.setSelected(streamExportParams.exportDetections);
+			exportLocalisations.setSelected(streamExportParams.exportLocalisations);
+			
+			newDataSelection();
+			enableControls();
+		}
+
+	private void enableControls() {
+		String locStr = getLocInfString();
+		boolean dets = exportDetections.isSelected();
+		boolean locs = exportLocalisations.isSelected();
+		granularities[binnedIndex].setEnabled(!locs);
+		granularities[encounterIndex].setEnabled(!locs);
+		GranularityEnumType granularity = getCurrentGranularity();
+		boolean canLoc = tethysDataProvider.canExportLocalisations(granularity);
+		exportLocalisations.setEnabled(canLoc);
+		if (canLoc == false) {
+			exportLocalisations.setSelected(false);
+			exportDetections.setSelected(true);
+		}
+		
+		if (granularities.length == 1) {
+			granularities[0].setSelected(true);
+		}
+		
+		binLength.setEnabled(granularities[binnedIndex].isSelected());
+		minBinnedCalls.setEnabled(granularities[binnedIndex].isSelected());
+		encounterGap.setEnabled(granularities[encounterIndex].isSelected());
+		minEncounterCalls.setEnabled(granularities[encounterIndex].isSelected());
+		boolean binOrencount = granularities[binnedIndex].isSelected() | granularities[encounterIndex].isSelected();
+		separateChannels.setEnabled(binOrencount);
+		groupChannels.setEnabled(binOrencount);
+	}
+
+	private String getLocInfString() {
+		TethysLocalisationInfo locInf = getDataBlock().getTethysDataProvider(getTethysControl()).getLocalisationInfo();
+		if (locInf == null) {
+			return null;
+		}
+		return locInf.getLoclisationTypes();
 	}
 
 }

src/whistlesAndMoans/dataSelector/WMDDataSelector.java

@@ -38,8 +38,9 @@ public class WMDDataSelector extends DataSelector {
 	}
 
 	@Override
-	public double scoreData(PamDataUnit pamDataUnit) {		
+	public double scoreData(PamDataUnit pamDataUnit) {	
-		if (getParams().getCombinationFlag() == DataSelectParams.DATA_SELECT_DISABLE) {
+		int combFlag = wmAlarmParameters.getCombinationFlag();
+		if (combFlag == DataSelectParams.DATA_SELECT_DISABLE) {
 			return 1;
 		}
 		ConnectedRegionDataUnit crDataUnit = (ConnectedRegionDataUnit) pamDataUnit;