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work on deployment wizards

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This commit is contained in:
Douglas Gillespie 2023-12-30 17:32:57 +00:00
parent 639f33607e
commit 70fbeaafde
519 changed files with 21955 additions and 1210 deletions
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2
.project
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@ -1,6 +1,6 @@
<?xml version="1.0" encoding="UTF-8"?>
<projectDescription>
<name>PamGuard Main DG</name>
<name>PamGuard Main Tethys</name>
<comment></comment>
<projects>
</projects>

2
.settings/org.eclipse.core.resources.prefs
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@ -1,2 +1,4 @@
eclipse.preferences.version=1
encoding//src/rawDeepLearningClassifer/segmenter/SegmenterProcess.java=UTF-8
encoding/<project>=UTF-8
encoding/src=UTF-8

7
dependency-reduced-pom.xml
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@ -4,7 +4,7 @@
<groupId>org.pamguard</groupId>
<artifactId>Pamguard</artifactId>
<name>Pamguard Java12+</name>
<version>2.02.09e</version>
<version>2.02.09f</version>
<description>Pamguard for Java 12+, using Maven to control dependcies</description>
<url>www.pamguard.org</url>
<organization>
@ -17,6 +17,7 @@
<resource>
<directory>src</directory>
<excludes>
<exclude>META-INF/*.SF,META-INF/*.DSA,META-INF/*.RSA</exclude>
<exclude>**/*.java</exclude>
<exclude>jars/*.*</exclude>
</excludes>
@ -196,6 +197,10 @@
<properties>
<maven.compiler.target>11</maven.compiler.target>
<maven.compiler.source>11</maven.compiler.source>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<javafx.version>16</javafx.version>
<jaxb.runtime.version>2.4.0-b180830.0438</jaxb.runtime.version>
<jaxb.xjc.version>2.4.0-b180830.0438</jaxb.xjc.version>
<jaxb.api.version>2.4.0-b180830.0359</jaxb.api.version>
</properties>
</project>

167
pom.xml
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@ -1,10 +1,8 @@
<project xmlns="http://maven.apache.org/POM/4.0.0"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>org.pamguard</groupId>
<artifactId>Pamguard</artifactId>
<version>2.02.09e</version>
<version>2.02.09f</version>
<name>Pamguard Java12+</name>
<description>Pamguard for Java 12+, using Maven to control dependcies</description>
<url>www.pamguard.org</url>
@ -18,6 +16,10 @@
<javafx.version>16</javafx.version>
<maven.compiler.source>11</maven.compiler.source>
<maven.compiler.target>11</maven.compiler.target>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<jaxb.runtime.version>2.4.0-b180830.0438</jaxb.runtime.version>
<jaxb.api.version>2.4.0-b180830.0359</jaxb.api.version>
<jaxb.xjc.version>2.4.0-b180830.0438</jaxb.xjc.version>
</properties>
<build>
@ -26,12 +28,14 @@
<resource>
<directory>src</directory>
<excludes>
<exclude>META-INF/*.SF,META-INF/*.DSA,META-INF/*.RSA</exclude>
<exclude>**/*.java</exclude> <!-- don't include any source files -->
<exclude>jars/*.*</exclude> <!-- don't include files in the jars folder -->
</excludes>
</resource>
</resources>
<plugins>
<plugin>
<!-- original maven compiler definition - uses the JRE's javac compiler, not the one Eclipse uses
@ -90,10 +94,23 @@
<version>3.2.1</version>
<configuration>
<transformers>
<transformer
implementation="org.apache.maven.plugins.shade.resource.ServicesResourceTransformer" />
<transformer implementation="org.apache.maven.plugins.shade.resource.ServicesResourceTransformer" />
</transformers>
<filters>
<!-- Moved these filters up to here from where they were int <executions><execution><configurtion>
based on advice at https://stackoverflow.com/questions/34738653/maven-shade-plugin-does-not-exclude-the-manifest-signature-files
and the are now working -->
<filter>
<artifact>*:*</artifact>
<excludes>
<exclude>META-INF/*.SF</exclude> <!-- get rid of manifests from library jars - also done in orig ant build file -->
<exclude>META-INF/*.DSA</exclude>
<exclude>META-INF/*.RSA</exclude>
</excludes>
</filter>
</filters>
</configuration>
<executions>
<execution>
<phase>package</phase>
@ -111,16 +128,6 @@
</transformer>
<transformer implementation="org.apache.maven.plugins.shade.resource.ServicesResourceTransformer" />
</transformers>
<filters>
<filter>
<artifact>*:*</artifact>
<excludes>
<exclude>META-INF/*.SF</exclude> <!-- get rid of manifests from library jars - also done in orig ant build file -->
<exclude>META-INF/*.DSA</exclude>
<exclude>META-INF/*.RSA</exclude>
</excludes>
</filter>
</filters>
</configuration>
</execution>
</executions>
@ -255,14 +262,14 @@
repository. Let Maven download the JavaFX files, and
then uncomment this repo again.
Same thing seems to be occurring if I try to update the postgresql library. -->
<!-- <repository> -->
<!-- <snapshots> -->
<!-- <enabled>false</enabled> -->
<!-- </snapshots> -->
<!-- <id>central</id> -->
<!-- <name>a0u0ltozdsehx-artifactory-primary-0-releases</name> -->
<!-- <url>https://jmachund.jfrog.io/artifactory/jpam2</url> -->
<!-- </repository> -->
<!-- <repository> -->
<!-- <snapshots> -->
<!-- <enabled>false</enabled> -->
<!-- </snapshots> -->
<!-- <id>central</id> -->
<!-- <name>a0u0ltozdsehx-artifactory-primary-0-releases</name> -->
<!-- <url>https://jmachund.jfrog.io/artifactory/jpam2</url> -->
<!-- </repository> -->
<!-- Repo for netCDF -->
<repository>
@ -697,7 +704,6 @@
</dependency>
<!-- https://mvnrepository.com/artifact/org.slf4j/slf4j-nop
this one is only needed to get rid of an annoying warning that shows up during startup -->
<dependency>
@ -707,7 +713,6 @@
</dependency>
<!-- https://mvnrepository.com/artifact/org.docx4j/docx4j-JAXB-ReferenceImpl -->
<!-- note that we are excluding slf4j-api here, because if we don't then one of the
transitive dependencies of docx4j (jcl-over-slf4j) will try to load an older
@ -780,6 +785,100 @@
</dependency>
-->
<!-- From NilusXMLGenerator POM at https://bitbucket.org/tethysacousticmetadata/nilusxmlgenerator/src/master/-->
<dependency>
<groupId>org.eclipse.persistence</groupId>
<artifactId>org.eclipse.persistence.moxy</artifactId>
<version>2.5.0</version>
</dependency>
<dependency>
<groupId>javax.xml.bind</groupId>
<artifactId>jaxb-api</artifactId>
<version>${jaxb.api.version}</version>
</dependency>
<dependency>
<groupId>org.glassfish.jaxb</groupId>
<artifactId>jaxb-runtime</artifactId>
<version>${jaxb.runtime.version}</version>
</dependency>
<dependency>
<groupId>org.glassfish.jaxb</groupId>
<artifactId>jaxb-xjc</artifactId>
<version>${jaxb.xjc.version}</version>
</dependency>
<!-- dependencies copied from TethysJavaClient -->
<dependency>
<groupId>com.sun.jersey.contribs</groupId>
<artifactId>jersey-multipart</artifactId>
<version>1.18.1</version>
</dependency>
<dependency>
<groupId>commons-cli</groupId>
<artifactId>commons-cli</artifactId>
<version>1.2</version>
</dependency>
<dependency>
<groupId>org.apache.poi</groupId>
<artifactId>poi</artifactId>
<version>3.10-beta1</version>
</dependency>
<dependency>
<groupId>com.sun.jersey</groupId>
<artifactId>jersey-client</artifactId>
<version>1.18.1</version>
</dependency>
<dependency>
<groupId>com.sun.jersey.contribs</groupId>
<artifactId>jersey-apache-client</artifactId>
<version>1.18.1</version>
</dependency>
<dependency>
<groupId>com.miglayout</groupId>
<artifactId>miglayout</artifactId>
<version>3.7.4</version>
</dependency>
<dependency>
<groupId>ca.juliusdavies</groupId>
<artifactId>not-yet-commons-ssl</artifactId>
<version>0.3.11</version>
</dependency>
<dependency>
<groupId>javax.ws.rs</groupId>
<artifactId>javax.ws.rs-api</artifactId>
<version>2.1.1</version>
</dependency>
<dependency>
<groupId>javax.xml.bind</groupId>
<artifactId>jaxb-api</artifactId>
<version>2.2.11</version>
</dependency>
<dependency>
<groupId>com.sun.xml.bind</groupId>
<artifactId>jaxb-impl</artifactId>
<version>2.2.11</version>
</dependency>
<dependency>
<groupId>javax.activation</groupId>
<artifactId>activation</artifactId>
<version>1.1</version>
</dependency>
<dependency>
<groupId>org.glassfish.jaxb</groupId>
<artifactId>jaxb-core</artifactId>
<version>2.2.11</version>
</dependency>
<dependency>
<groupId>org.glassfish.jersey.core</groupId>
<artifactId>jersey-common</artifactId>
<version>2.2</version>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-text</artifactId>
<version>1.9</version>
</dependency>
<!-- not in Maven repository
you may need to copy files from your downloaded PAMGuard source code, e.g. C:\Users\*yourreposfolder*\source\repos\PAMGuardPAMGuard\repo\pamguard\org\x3\2.2.2 to
C:\Users\*yourusername*\.m2\repository\pamguard\org\x3\2.2.2-->
@ -789,6 +888,22 @@ C:\Users\*yourusername*\.m2\repository\pamguard\org\x3\2.2.2-->
<version>2.2.6</version>
</dependency>
<!-- Also not in Maven, so you may need to copy the javaclient and nilus folders from
e.g. C:\Users\dg50\source\repos\**your projectfolder**\repo\tethys\org
to C:\Users\dg50\.m2\repository\tethys\org -->
<dependency>
<groupId>tethys.org</groupId>
<artifactId>nilus</artifactId>
<version>3.0</version>
</dependency>
<dependency>
<groupId>tethys.org</groupId>
<artifactId>javaclient</artifactId>
<version>3.0</version>
</dependency>
<!-- https://mvnrepository.com/artifact/it.sauronsoftware/jave -->
<dependency>

4
repo/tethys/org/javaclient/3.0/_remote.repositories Normal file
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@ -0,0 +1,4 @@
#NOTE: This is an Aether internal implementation file, its format can be changed without prior notice.
#Thu Dec 21 11:13:37 GMT 2023
javaclient-3.0.jar>=
javaclient-3.0.pom>=

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repo/tethys/org/javaclient/3.0/javaclient-3.0.jar Normal file
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9
repo/tethys/org/javaclient/3.0/javaclient-3.0.pom Normal file
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@ -0,0 +1,9 @@
<?xml version="1.0" encoding="UTF-8"?>
<project xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd" xmlns="http://maven.apache.org/POM/4.0.0"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
<modelVersion>4.0.0</modelVersion>
<groupId>tethys.org</groupId>
<artifactId>javaclient</artifactId>
<version>3.0</version>
<description>POM was created from install:install-file</description>
</project>

12
repo/tethys/org/javaclient/maven-metadata-local.xml Normal file
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@ -0,0 +1,12 @@
<?xml version="1.0" encoding="UTF-8"?>
<metadata>
<groupId>tethys.org</groupId>
<artifactId>javaclient</artifactId>
<versioning>
<release>3.0</release>
<versions>
<version>3.0</version>
</versions>
<lastUpdated>20231221111337</lastUpdated>
</versioning>
</metadata>

4
repo/tethys/org/nilus/3.0/_remote.repositories Normal file
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@ -0,0 +1,4 @@
#NOTE: This is a Maven Resolver internal implementation file, its format can be changed without prior notice.
#Thu Dec 21 11:14:13 GMT 2023
nilus-3.0.pom>=
nilus-3.0.jar>=

11
repo/tethys/org/nilus/3.0/m2e-lastUpdated.properties Normal file
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@ -0,0 +1,11 @@
#Thu Dec 21 16:45:12 GMT 2023
bedatadriven|https\://nexus.bedatadriven.com/content/groups/public/|javadoc=1703177112968
talan|https\://nexus.talanlabs.com/content/repositories/releases/|javadoc=1703177112968
repo|file\://C\:\\Users\\dg50\\source\\repos\\PAMGuardDG_2/repo|javadoc=1703177112968
central|https\://repo1.maven.org/maven2|sources=1703157324238
unidata-all|https\://artifacts.unidata.ucar.edu/repository/unidata-all/|javadoc=1703177112968
repo|file\://C\:\\Users\\dg50\\source\\repos\\PAMGuardDG_2/repo|sources=1703157324238
talan|https\://nexus.talanlabs.com/content/repositories/releases/|sources=1703157324238
bedatadriven|https\://nexus.bedatadriven.com/content/groups/public/|sources=1703157324238
unidata-all|https\://artifacts.unidata.ucar.edu/repository/unidata-all/|sources=1703157324238
central|https\://repo1.maven.org/maven2|javadoc=1703177112968

12
repo/tethys/org/nilus/3.0/nilus-3.0-javadoc.jar.lastUpdated Normal file
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@ -0,0 +1,12 @@
#NOTE: This is a Maven Resolver internal implementation file, its format can be changed without prior notice.
#Thu Dec 21 16:45:12 GMT 2023
@default-talan-https\://nexus.talanlabs.com/content/repositories/releases/.lastUpdated=1703177112601
https\://repo1.maven.org/maven2/.error=
file\://C\:\\Users\\dg50\\source\\repos\\PAMGuardDG_2/repo/.error=
file\://C\:\\Users\\dg50\\source\\repos\\PAMGuardDG_2/repo/.lastUpdated=1703177110940
https\://artifacts.unidata.ucar.edu/repository/unidata-all/.error=
https\://nexus.bedatadriven.com/content/groups/public/.error=
https\://nexus.bedatadriven.com/content/groups/public/.lastUpdated=1703177112519
https\://artifacts.unidata.ucar.edu/repository/unidata-all/.lastUpdated=1703177112101
https\://repo1.maven.org/maven2/.lastUpdated=1703177112965
https\://nexus.talanlabs.com/content/repositories/releases/.error=Could not transfer artifact tethys.org\:nilus\:jar\:javadoc\:3.0 from/to talan (https\://nexus.talanlabs.com/content/repositories/releases/)\: nexus.talanlabs.com

12
repo/tethys/org/nilus/3.0/nilus-3.0-sources.jar.lastUpdated Normal file
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@ -0,0 +1,12 @@
#NOTE: This is a Maven Resolver internal implementation file, its format can be changed without prior notice.
#Thu Dec 21 11:15:24 GMT 2023
@default-talan-https\://nexus.talanlabs.com/content/repositories/releases/.lastUpdated=1703157323819
https\://repo1.maven.org/maven2/.error=
file\://C\:\\Users\\dg50\\source\\repos\\PAMGuardDG_2/repo/.error=
file\://C\:\\Users\\dg50\\source\\repos\\PAMGuardDG_2/repo/.lastUpdated=1703157322932
https\://artifacts.unidata.ucar.edu/repository/unidata-all/.error=
https\://nexus.bedatadriven.com/content/groups/public/.error=
https\://nexus.bedatadriven.com/content/groups/public/.lastUpdated=1703157323770
https\://artifacts.unidata.ucar.edu/repository/unidata-all/.lastUpdated=1703157323508
https\://repo1.maven.org/maven2/.lastUpdated=1703157324237
https\://nexus.talanlabs.com/content/repositories/releases/.error=Could not transfer artifact tethys.org\:nilus\:jar\:sources\:3.0 from/to talan (https\://nexus.talanlabs.com/content/repositories/releases/)\: nexus.talanlabs.com

BIN
repo/tethys/org/nilus/3.0/nilus-3.0.jar Normal file
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9
repo/tethys/org/nilus/3.0/nilus-3.0.pom Normal file
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@ -0,0 +1,9 @@
<?xml version="1.0" encoding="UTF-8"?>
<project xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 https://maven.apache.org/xsd/maven-4.0.0.xsd" xmlns="http://maven.apache.org/POM/4.0.0"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
<modelVersion>4.0.0</modelVersion>
<groupId>tethys.org</groupId>
<artifactId>nilus</artifactId>
<version>3.0</version>
<description>POM was created from install:install-file</description>
</project>

12
repo/tethys/org/nilus/maven-metadata-local.xml Normal file
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@ -0,0 +1,12 @@
<?xml version="1.0" encoding="UTF-8"?>
<metadata>
<groupId>tethys.org</groupId>
<artifactId>nilus</artifactId>
<versioning>
<release>3.0</release>
<versions>
<version>3.0</version>
</versions>
<lastUpdated>20231221111413</lastUpdated>
</versioning>
</metadata>

3
src/AIS/AISParameters.java
View File

@ -5,6 +5,7 @@ import java.lang.reflect.Field;
import PamModel.parametermanager.ManagedParameters;
import PamModel.parametermanager.PamParameterSet;
import PamModel.parametermanager.PamParameterSet.ParameterSetType;
import PamModel.parametermanager.PrivatePamParameterData;
public class AISParameters implements Serializable, Cloneable, ManagedParameters {
@ -51,7 +52,7 @@ public class AISParameters implements Serializable, Cloneable, ManagedParameters
@Override
public PamParameterSet getParameterSet() {
PamParameterSet ps = PamParameterSet.autoGenerate(this);
PamParameterSet ps = PamParameterSet.autoGenerate(this, ParameterSetType.DETECTOR);
try {
Field field = this.getClass().getDeclaredField("nmeaSource");
ps.put(new PrivatePamParameterData(this, field) {

3
src/AIS/AISPositionReport.java
View File

@ -5,6 +5,7 @@ import java.io.Serializable;
import NMEA.NMEABitArray;
import PamModel.parametermanager.ManagedParameters;
import PamModel.parametermanager.PamParameterSet;
import PamModel.parametermanager.PamParameterSet.ParameterSetType;
import PamUtils.LatLong;
/**
@ -160,7 +161,7 @@ sensor.
@Override
public PamParameterSet getParameterSet() {
PamParameterSet ps = PamParameterSet.autoGenerate(this);
PamParameterSet ps = PamParameterSet.autoGenerate(this, ParameterSetType.DISPLAY);
return ps;
}

3
src/AIS/AISStaticData.java
View File

@ -6,6 +6,7 @@ import java.util.Calendar;
import NMEA.NMEABitArray;
import PamModel.parametermanager.ManagedParameters;
import PamModel.parametermanager.PamParameterSet;
import PamModel.parametermanager.PamParameterSet.ParameterSetType;
import PamUtils.PamCalendar;
public class AISStaticData extends AISReport implements Serializable, ManagedParameters{
@ -393,7 +394,7 @@ public class AISStaticData extends AISReport implements Serializable, ManagedPar
@Override
public PamParameterSet getParameterSet() {
PamParameterSet ps = PamParameterSet.autoGenerate(this);
PamParameterSet ps = PamParameterSet.autoGenerate(this, ParameterSetType.DISPLAY);
return ps;
}

10
src/Acquisition/AcquisitionControl.java
View File

@ -283,6 +283,16 @@ public class AcquisitionControl extends RawInputControlledUnit implements PamSet
return daqControllers;
}
@Override
public String getDataLocation() {
if (offlineFileServer == null) {
return null;
}
else {
return offlineFileServer.getDataLocation();
}
}
public AcquisitionProcess getDaqProcess() {
return acquisitionProcess;
}

1
src/Acquisition/AcquisitionDialog.java
View File

@ -151,6 +151,7 @@ public class AcquisitionDialog extends PamDialog {
acquisitionParameters = oldParams.clone();
acquisitionControl = daqControl;
// singleInstance = null;
if (singleInstance == null || singleInstance.getOwner() != parentFrame) {
singleInstance = new AcquisitionDialog(parentFrame);

3
src/Acquisition/AcquisitionParameters.java
View File

@ -10,6 +10,7 @@ import Array.Preamplifier;
import PamController.PamController;
import PamModel.parametermanager.ManagedParameters;
import PamModel.parametermanager.PamParameterSet;
import PamModel.parametermanager.PamParameterSet.ParameterSetType;
import PamModel.parametermanager.PrivatePamParameterData;
import PamguardMVC.PamConstants;
@ -320,7 +321,7 @@ public class AcquisitionParameters implements Serializable, Cloneable, ManagedPa
@Override
public PamParameterSet getParameterSet() {
PamParameterSet ps = PamParameterSet.autoGenerate(this);
PamParameterSet ps = PamParameterSet.autoGenerate(this, ParameterSetType.DETECTOR);
try {
Field field = this.getClass().getDeclaredField("channelList");
ps.put(new PrivatePamParameterData(this, field) {

3
src/Acquisition/DaqStatusModuleHeader.java
View File

@ -5,6 +5,7 @@ import java.lang.reflect.Field;
import PamModel.parametermanager.ManagedParameters;
import PamModel.parametermanager.PamParameterSet;
import PamModel.parametermanager.PamParameterSet.ParameterSetType;
import PamModel.parametermanager.PrivatePamParameterData;
import binaryFileStorage.BinaryHeader;
import binaryFileStorage.BinaryObjectData;
@ -30,7 +31,7 @@ class DaqStatusModuleHeader extends ModuleHeader implements Serializable, Manage
@Override
public PamParameterSet getParameterSet() {
PamParameterSet ps = PamParameterSet.autoGenerate(this);
PamParameterSet ps = PamParameterSet.autoGenerate(this, ParameterSetType.DETECTOR);
try {
Field field = this.getClass().getDeclaredField("daqName");
ps.put(new PrivatePamParameterData(this, field) {

3
src/Acquisition/FileInputParameters.java
View File

@ -5,6 +5,7 @@ import java.util.ArrayList;
import PamModel.parametermanager.ManagedParameters;
import PamModel.parametermanager.PamParameterSet;
import PamModel.parametermanager.PamParameterSet.ParameterSetType;
/**
* Used by FileInputSystem
@ -78,7 +79,7 @@ public class FileInputParameters implements Serializable, Cloneable, ManagedPara
return null;
}
PamParameterSet ps = PamParameterSet.autoGenerate(this);
PamParameterSet ps = PamParameterSet.autoGenerate(this, ParameterSetType.DETECTOR);
return ps;
}
}

2
src/Acquisition/FolderInputSystem.java
View File

@ -700,7 +700,7 @@ public class FolderInputSystem extends FileInputSystem implements PamSettings, D
if (currentFile > 0 && currentFile >= allFiles.size()) {
fileListComplete();
}
// System.out.println("FolderinputSytem: daqHasEnded");
System.out.println("FolderinputSytem: daqHasEnded");
}
private void setFolderProgress() {

3
src/Acquisition/SoundCardParameters.java
View File

@ -4,6 +4,7 @@ import java.io.Serializable;
import PamModel.parametermanager.ManagedParameters;
import PamModel.parametermanager.PamParameterSet;
import PamModel.parametermanager.PamParameterSet.ParameterSetType;
import simulatedAcquisition.SimProcess;
/**
@ -47,7 +48,7 @@ public class SoundCardParameters implements Serializable, Cloneable, ManagedPara
return null;
}
PamParameterSet ps = PamParameterSet.autoGenerate(this);
PamParameterSet ps = PamParameterSet.autoGenerate(this, ParameterSetType.DETECTOR);
return ps;
}
}

3
src/Acquisition/filedate/StandardFileDateSettings.java
View File

@ -6,6 +6,7 @@ import java.util.TimeZone;
import PamModel.parametermanager.ManagedParameters;
import PamModel.parametermanager.PamParameterSet;
import PamModel.parametermanager.PamParameterSet.ParameterSetType;
import soundtrap.STXMLFile;
public class StandardFileDateSettings implements Serializable, Cloneable, ManagedParameters {
@ -150,7 +151,7 @@ public class StandardFileDateSettings implements Serializable, Cloneable, Manage
@Override
public PamParameterSet getParameterSet() {
PamParameterSet ps = PamParameterSet.autoGenerate(this);
PamParameterSet ps = PamParameterSet.autoGenerate(this, ParameterSetType.DISPLAY);
return ps;
}
}

3
src/Acquisition/gpstiming/PPSParameters.java
View File

@ -6,6 +6,7 @@ import Acquisition.AcquisitionControl;
import Acquisition.AcquisitionDialog;
import PamModel.parametermanager.ManagedParameters;
import PamModel.parametermanager.PamParameterSet;
import PamModel.parametermanager.PamParameterSet.ParameterSetType;
public class PPSParameters implements Cloneable, Serializable, ManagedParameters {
@ -36,7 +37,7 @@ public class PPSParameters implements Cloneable, Serializable, ManagedParameters
@Override
public PamParameterSet getParameterSet() {
PamParameterSet ps = PamParameterSet.autoGenerate(this);
PamParameterSet ps = PamParameterSet.autoGenerate(this, ParameterSetType.DETECTOR);
return ps;
}

3
src/AirgunDisplay/AirgunParameters.java
View File

@ -6,6 +6,7 @@ import java.lang.reflect.Field;
import PamModel.parametermanager.ManagedParameters;
import PamModel.parametermanager.PamParameterSet;
import PamModel.parametermanager.PamParameterSet.ParameterSetType;
import PamModel.parametermanager.PrivatePamParameterData;
import PamUtils.LatLong;
@ -95,7 +96,7 @@ public class AirgunParameters implements Serializable, Cloneable, ManagedParamet
@Override
public PamParameterSet getParameterSet() {
PamParameterSet ps = PamParameterSet.autoGenerate(this);
PamParameterSet ps = PamParameterSet.autoGenerate(this, ParameterSetType.DISPLAY);
try {
Field field = this.getClass().getDeclaredField("dimE");
ps.put(new PrivatePamParameterData(this, field) {

8
src/Array/ArrayDialog.java
View File

@ -45,6 +45,8 @@ public class ArrayDialog extends PamDialog implements ActionListener {
private HydrophoneDiagram hydrophoneDiagram;
private InstrumentIdentityPanel instrumentIdentityPanel;
private JButton okButton, cancelButton;
private JButton newArrayButton, copyArrayButton, importArrayButton, exportArrayButton;
@ -69,11 +71,14 @@ public class ArrayDialog extends PamDialog implements ActionListener {
eastPanel.add(channelPanel.getChannelPanel());
environmentPanel = new EnvironmentPanel(this);
instrumentIdentityPanel = new InstrumentIdentityPanel();
// eastPanel.add(environmentPanel.getEnvironmentPanel());
hydrophoneDiagram = new HydrophoneDiagram(this);
JPanel westPanel = new JPanel(new BorderLayout());
westPanel.add(BorderLayout.CENTER, hydrophoneDiagram.getPlotPanel());
westPanel.add(BorderLayout.SOUTH, environmentPanel.getEnvironmentPanel());
westPanel.add(BorderLayout.NORTH, instrumentIdentityPanel.getComponent());
splitPanel.add(westPanel);
@ -144,6 +149,7 @@ public class ArrayDialog extends PamDialog implements ActionListener {
hydrophoneDialogPanel.setParams(selArray);
channelPanel.setParams();
hydrophoneDiagram.rePaint();
instrumentIdentityPanel.setParams(selArray);
if (selArray != null) {
environmentPanel.setNewSpeed(selArray.getSpeedOfSound());
}
@ -171,6 +177,7 @@ public class ArrayDialog extends PamDialog implements ActionListener {
array.setSpeedOfSound(environmentPanel.getNewSpeed());
array.setSpeedOfSoundError(environmentPanel.getNewError());
hydrophoneDialogPanel.getParams();
instrumentIdentityPanel.getParams(array);
if (checkDaqChannels(array) == false) {
return false;
@ -250,6 +257,7 @@ public class ArrayDialog extends PamDialog implements ActionListener {
environmentPanel.setNewSpeed(currentArray.getSpeedOfSound());
environmentPanel.setNewError(currentArray.getSpeedOfSoundError());
}
instrumentIdentityPanel.setParams(currentArray);
}
void newChannelSelection() {

9
src/Array/Hydrophone.java
View File

@ -28,6 +28,7 @@ import java.util.Arrays;
import PamModel.parametermanager.ManagedParameters;
import PamModel.parametermanager.PamParameterSet;
import PamModel.parametermanager.PamParameterSet.ParameterSetType;
import PamModel.parametermanager.PrivatePamParameterData;
import pamMaths.PamVector;
import PamView.PamSymbol;
@ -158,7 +159,7 @@ public class Hydrophone implements Serializable, Cloneable, ManagedParameters {
return sensitivity;
}
protected void setSensitivity(double sensitivity) {
public void setSensitivity(double sensitivity) {
this.sensitivity = sensitivity;
}
@ -333,7 +334,7 @@ public class Hydrophone implements Serializable, Cloneable, ManagedParameters {
/**
* @return Returns the coordinate.
*/
protected double[] getCoordinates() {
public double[] getCoordinates() {
return Arrays.copyOf(coordinate,3);
}
@ -364,7 +365,7 @@ public class Hydrophone implements Serializable, Cloneable, ManagedParameters {
/**
* @param preampGain The preampGain to set.
*/
protected void setPreampGain(double preampGain) {
public void setPreampGain(double preampGain) {
this.preampGain = preampGain;
}
@ -478,7 +479,7 @@ public class Hydrophone implements Serializable, Cloneable, ManagedParameters {
@Override
public PamParameterSet getParameterSet() {
PamParameterSet pps = PamParameterSet.autoGenerate(this);
PamParameterSet pps = PamParameterSet.autoGenerate(this, ParameterSetType.DETECTOR);
Field f;
try {
f = this.getClass().getDeclaredField("coordinate");

3
src/Array/HydrophoneLocator.java
View File

@ -7,6 +7,7 @@ import Array.streamerOrigin.StreamerDataIterator;
import GPS.GpsData;
import PamModel.parametermanager.ManagedParameters;
import PamModel.parametermanager.PamParameterSet;
import PamModel.parametermanager.PamParameterSet.ParameterSetType;
import PamModel.parametermanager.PrivatePamParameterData;
import PamUtils.LatLong;
import PamguardMVC.PamDataBlock;
@ -225,7 +226,7 @@ abstract public class HydrophoneLocator implements Serializable, Cloneable, Mana
*/
@Override
public PamParameterSet getParameterSet() {
PamParameterSet ps = PamParameterSet.autoGenerate(this);
PamParameterSet ps = PamParameterSet.autoGenerate(this, ParameterSetType.DETECTOR);
try {
Field field = this.getClass().getDeclaredField("pamArray");
ps.put(new PrivatePamParameterData(this, field) {

72
src/Array/InstrumentIdentityPanel.java Normal file
View File

@ -0,0 +1,72 @@
package Array;
import java.awt.GridBagConstraints;
import java.awt.GridBagLayout;
import javax.swing.JComponent;
import javax.swing.JLabel;
import javax.swing.JPanel;
import javax.swing.JTextField;
import javax.swing.border.TitledBorder;
import PamView.dialog.PamGridBagContraints;
import PamView.panel.WestAlignedPanel;
/**
* Instrument identity panel, contrians additional fields required by Tethys.
* @author dg50
*
*/
public class InstrumentIdentityPanel {
private JPanel mainPanel;
private JTextField instrumentId;
private JTextField instrumentType;
public InstrumentIdentityPanel() {
mainPanel = new WestAlignedPanel();
mainPanel.setBorder(new TitledBorder("Instrument information"));
mainPanel.setLayout(new GridBagLayout());
GridBagConstraints c = new PamGridBagContraints();
mainPanel.add(new JLabel("Instrument Type ", JLabel.RIGHT), c);
c.gridx++;
mainPanel.add(instrumentType = new JTextField(20), c);
c.gridx = 0;
c.gridy++;
mainPanel.add(new JLabel("Instrument Id ", JLabel.RIGHT), c);
c.gridx++;
mainPanel.add(instrumentId = new JTextField(20), c);
instrumentType.setToolTipText("Instrument type, e.g. Towed array, HARP, EAR, Popup, DMON, Rock Hopper, etc.");
instrumentId.setToolTipText("Instrument identifier, e.g. serial number");
}
public JComponent getComponent() {
return mainPanel;
}
public void setParams(PamArray currentArray) {
if (currentArray == null) {
currentArray = ArrayManager.getArrayManager().getCurrentArray();
}
if (currentArray == null) {
return;
}
instrumentType.setText(currentArray.getInstrumentType());
instrumentId.setText(currentArray.getInstrumentId());
}
public void getParams(PamArray currentArray) {
if (currentArray == null) {
currentArray = ArrayManager.getArrayManager().getCurrentArray();
}
if (currentArray == null) {
return;
}
currentArray.setInstrumentType(instrumentType.getText());
currentArray.setInstrumentId(instrumentId.getText());
}
}

5
src/Array/MovingHydrophoneLocator.java
View File

@ -16,5 +16,10 @@ abstract public class MovingHydrophoneLocator extends SimpleHydrophoneLocator {
super(pamArray, streamer);
}
@Override
public boolean isChangeable() {
return true;
}
}

30
src/Array/PamArray.java
View File

@ -35,6 +35,7 @@ import Array.streamerOrigin.StreamerDataIterator;
import GPS.GpsData;
import PamModel.parametermanager.ManagedParameters;
import PamModel.parametermanager.PamParameterSet;
import PamModel.parametermanager.PamParameterSet.ParameterSetType;
import PamModel.parametermanager.PrivatePamParameterData;
import PamUtils.LatLong;
import PamUtils.PamArrayUtils;
@ -91,6 +92,33 @@ public class PamArray implements Serializable, Cloneable, ManagedParameters {
private String arrayFile;
/**
* Type, used for Tethys and other meta data control
*/
private String instrumentType;
/**
* Array Id. Can be anything. Compulsory for Tethys.
*/
private String instrumentId;
public String getInstrumentType() {
return instrumentType;
}
public void setInstrumentType(String instrumentType) {
this.instrumentType = instrumentType;
}
public String getInstrumentId() {
return instrumentId;
}
public void setInstrumentId(String instrumentId) {
this.instrumentId = instrumentId;
}
// private int originInterpolation = ORIGIN_USE_LATEST;
private int originInterpolation = ORIGIN_USE_PRECEEDING;
@ -1574,7 +1602,7 @@ public class PamArray implements Serializable, Cloneable, ManagedParameters {
@Override
public PamParameterSet getParameterSet() {
PamParameterSet ps = PamParameterSet.autoGenerate(this);
PamParameterSet ps = PamParameterSet.autoGenerate(this, ParameterSetType.DETECTOR);
try {
Field field = this.getClass().getDeclaredField("streamers");
ps.put(new PrivatePamParameterData(this, field) {

3
src/Array/Preamplifier.java
View File

@ -25,6 +25,7 @@ import java.io.Serializable;
import PamModel.parametermanager.ManagedParameters;
import PamModel.parametermanager.PamParameterSet;
import PamModel.parametermanager.PamParameterSet.ParameterSetType;
/**
*
@ -79,7 +80,7 @@ public class Preamplifier implements Serializable, Cloneable, ManagedParameters
@Override
public PamParameterSet getParameterSet() {
PamParameterSet ps = PamParameterSet.autoGenerate(this);
PamParameterSet ps = PamParameterSet.autoGenerate(this, ParameterSetType.DETECTOR);
return ps;
}

3
src/Array/Streamer.java
View File

@ -17,6 +17,7 @@ import PamController.PamController;
import PamController.masterReference.MasterReferencePoint;
import PamModel.parametermanager.ManagedParameters;
import PamModel.parametermanager.PamParameterSet;
import PamModel.parametermanager.PamParameterSet.ParameterSetType;
import PamModel.parametermanager.PrivatePamParameterData;
import PamUtils.LatLong;
import PamUtils.PamCalendar;
@ -767,7 +768,7 @@ public class Streamer implements Serializable, Cloneable, ManagedParameters {
@Override
public PamParameterSet getParameterSet() {
PamParameterSet ps = PamParameterSet.autoGenerate(this);
PamParameterSet ps = PamParameterSet.autoGenerate(this, ParameterSetType.DETECTOR);
try {
Field field = this.getClass().getDeclaredField("coordinate");
ps.put(new PrivatePamParameterData(this, field) {

12
src/Array/StreamerDialog.java
View File

@ -259,6 +259,7 @@ public class StreamerDialog extends PamDialog {
// }
singleInstance.currentArray = currentArray;
singleInstance.defaultStreamer = streamer;//.clone();
// singleInstance.st
singleInstance.setParams();
singleInstance.setVisible(true);
return singleInstance.defaultStreamer;
@ -549,6 +550,17 @@ public class StreamerDialog extends PamDialog {
pack();
}
}
try {
OriginSettings os = defaultStreamer.getOriginSettings(currentOriginMethod.getClass());
if (os != null) {
currentOriginMethod.setOriginSettings(os);
}
}
catch (Exception e) {
// will throw if it tries to set the wrong type of settings.
}
enableControls();
}

3
src/Array/streamerOrigin/OriginSettings.java
View File

@ -3,6 +3,7 @@ package Array.streamerOrigin;
import PamController.SettingsObject;
import PamModel.parametermanager.ManagedParameters;
import PamModel.parametermanager.PamParameterSet;
import PamModel.parametermanager.PamParameterSet.ParameterSetType;
/**
* Class to hold settings for the different origin methods.
@ -47,7 +48,7 @@ public abstract class OriginSettings implements SettingsObject, Cloneable, Manag
@Override
public PamParameterSet getParameterSet() {
PamParameterSet ps = PamParameterSet.autoGenerate(this);
PamParameterSet ps = PamParameterSet.autoGenerate(this, ParameterSetType.DETECTOR);
return ps;
}

3
src/ArrayAccelerometer/ArrayAccelParams.java
View File

@ -5,6 +5,7 @@ import java.util.Arrays;
import PamModel.parametermanager.ManagedParameters;
import PamModel.parametermanager.PamParameterSet;
import PamModel.parametermanager.PamParameterSet.ParameterSetType;
import mcc.MccJniInterface;
import mcc.mccjna.MCCConstants;
@ -67,7 +68,7 @@ public class ArrayAccelParams implements Serializable, Cloneable, ManagedParamet
@Override
public PamParameterSet getParameterSet() {
PamParameterSet ps = PamParameterSet.autoGenerate(this);
PamParameterSet ps = PamParameterSet.autoGenerate(this, ParameterSetType.DETECTOR);
return ps;
}

3
src/Azigram/AzigramParameters.java
View File

@ -5,6 +5,7 @@ import java.lang.reflect.Field;
import PamModel.parametermanager.ManagedParameters;
import PamModel.parametermanager.PamParameterSet;
import PamModel.parametermanager.PamParameterSet.ParameterSetType;
import PamModel.parametermanager.PrivatePamParameterData;
import PamView.GroupedSourceParameters;
import PamguardMVC.PamConstants;
@ -44,7 +45,7 @@ public class AzigramParameters implements Serializable, ManagedParameters, Clone
@Override
public PamParameterSet getParameterSet() {
PamParameterSet ps = PamParameterSet.autoGenerate(this);
PamParameterSet ps = PamParameterSet.autoGenerate(this, ParameterSetType.DETECTOR);
try {
Field field = this.getClass().getDeclaredField("name");
ps.put(new PrivatePamParameterData(this, field) {

3
src/Filters/FilterParameters_2.java
View File

@ -7,6 +7,7 @@ import org.w3c.dom.Element;
import PamModel.parametermanager.ManagedParameters;
import PamModel.parametermanager.PamParameterSet;
import PamModel.parametermanager.PamParameterSet.ParameterSetType;
/**
* FilterPArameters for use when the filter is on it's own (within a FilterController)
@ -39,7 +40,7 @@ public class FilterParameters_2 implements Serializable, Cloneable, ManagedParam
@Override
public PamParameterSet getParameterSet() {
PamParameterSet ps = PamParameterSet.autoGenerate(this);
PamParameterSet ps = PamParameterSet.autoGenerate(this, ParameterSetType.DETECTOR);
return ps;
}

3
src/Filters/FilterParams.java
View File

@ -30,6 +30,7 @@ import org.w3c.dom.Element;
import PamController.PamControlledUnit;
import PamModel.parametermanager.ManagedParameters;
import PamModel.parametermanager.PamParameterSet;
import PamModel.parametermanager.PamParameterSet.ParameterSetType;
import PamUtils.FrequencyFormat;
/**
@ -358,7 +359,7 @@ public class FilterParams implements Serializable, Cloneable, ManagedParameters
@Override
public PamParameterSet getParameterSet() {
PamParameterSet ps = PamParameterSet.autoGenerate(this);
PamParameterSet ps = PamParameterSet.autoGenerate(this, ParameterSetType.DETECTOR);
return ps;
}

3
src/GPS/GPSParameters.java
View File

@ -5,6 +5,7 @@ import java.lang.reflect.Field;
import PamModel.parametermanager.ManagedParameters;
import PamModel.parametermanager.PamParameterSet;
import PamModel.parametermanager.PamParameterSet.ParameterSetType;
import PamModel.parametermanager.PrivatePamParameterData;
public class GPSParameters implements Serializable, Cloneable, ManagedParameters {
@ -175,7 +176,7 @@ public class GPSParameters implements Serializable, Cloneable, ManagedParameters
@Override
public PamParameterSet getParameterSet() {
PamParameterSet ps = PamParameterSet.autoGenerate(this);
PamParameterSet ps = PamParameterSet.autoGenerate(this, ParameterSetType.DETECTOR);
try {
Field field = this.getClass().getDeclaredField("nmeaSource");
ps.put(new PrivatePamParameterData(this, field) {

11
src/GPS/GpsDataUnit.java
View File

@ -1,5 +1,6 @@
package GPS;
import PamUtils.PamCalendar;
import PamguardMVC.PamDataUnit;
public class GpsDataUnit extends PamDataUnit {
@ -52,12 +53,18 @@ public class GpsDataUnit extends PamDataUnit {
*/
@Override
public String getSummaryString() {
// TODO Auto-generated method stub
String str = super.getSummaryString();
// String str = super.getSummaryString();
String str = String.format("<html>%s<br>UID:%d, Database: %d<br>%s<br>",
"GPS Data", getUID(), getDatabaseIndex(), PamCalendar.formatDBDateTime(getTimeMilliseconds(), true));
if (gpsData != null) {
str += gpsData.summaryString();
}
return str;
}
@Override
public double[] getFrequency() {
return null;
}
}

3
src/GPS/GpsLogger.java
View File

@ -295,7 +295,8 @@ public class GpsLogger extends SQLLogging {
* time from the UTC column which is NOT the GpsData time which was the real GPS time.
*/
int gpsIntTimeVal = gpsTime.getIntegerValue();
Object ts = getTableDefinition().getTimeStampItem().getValue();
PamTableDefinition pamTableDef = (PamTableDefinition) getTableDefinition();
Object ts = pamTableDef.getTimeStampItem().getValue();
long gpsDate = sqlTypes.millisFromTimeStamp(ts);
if (gpsDate%1000 == 0) {
// some databases may have stored the milliseconds, in which

3
src/IshmaelDetector/IshDetParams.java
View File

@ -17,6 +17,7 @@ import java.lang.reflect.Field;
import PamModel.parametermanager.ManagedParameters;
import PamModel.parametermanager.PamParameterSet;
import PamModel.parametermanager.PrivatePamParameterData;
import PamModel.parametermanager.PamParameterSet.ParameterSetType;
import PamView.GroupedSourceParameters;
public class IshDetParams implements Serializable, Cloneable, ManagedParameters {
@ -96,7 +97,7 @@ public class IshDetParams implements Serializable, Cloneable, ManagedParameters
@Override
public PamParameterSet getParameterSet() {
PamParameterSet ps = PamParameterSet.autoGenerate(this);
PamParameterSet ps = PamParameterSet.autoGenerate(this, ParameterSetType.DETECTOR);
try {
Field field = this.getClass().getDeclaredField("inputDataSource");
ps.put(new PrivatePamParameterData(this, field) {

3
src/IshmaelDetector/IshDisplayParams.java
View File

@ -4,6 +4,7 @@ import java.io.Serializable;
import PamModel.parametermanager.ManagedParameters;
import PamModel.parametermanager.PamParameterSet;
import PamModel.parametermanager.PamParameterSet.ParameterSetType;
/**
* Ishamel display parameters for the Spectrogram plug in.
@ -42,7 +43,7 @@ public class IshDisplayParams implements Serializable, Cloneable, ManagedParamet
@Override
public PamParameterSet getParameterSet() {
PamParameterSet ps = PamParameterSet.autoGenerate(this);
PamParameterSet ps = PamParameterSet.autoGenerate(this, ParameterSetType.DISPLAY);
return ps;
}

5
src/IshmaelDetector/IshLogger.java
View File

@ -8,14 +8,13 @@ import java.sql.Types;
import PamguardMVC.PamDataBlock;
import PamguardMVC.PamDataUnit;
import generalDatabase.EmptyTableDefinition;
//import pamDatabase.SQLLogging;
//import PamguardMVC.RecyclingDataBlock;
import generalDatabase.PamDetectionLogging;
public class IshLogger extends PamDetectionLogging {
IshDetControl ishDetControl;
PamTableDefinition tableDefinition;
PamTableItem systemDate, durationSecs, secSinceStart, peakHeight;
// Peak is more important than start time for matched filter & spectrogram correlation
PamTableItem peakSample, peakDelaySecs;
@ -25,7 +24,7 @@ public class IshLogger extends PamDetectionLogging {
super(pamDataBlock, UPDATE_POLICY_WRITENEW);
this.ishDetControl = ishDetControl;
tableDefinition = getTableDefinition();
EmptyTableDefinition tableDefinition = getTableDefinition();
// PamTableItem tableItem;
// setUpdatePolicy(UPDATE_POLICY_WRITENEW);

5
src/IshmaelLocator/IshLocSqlLogging.java
View File

@ -14,14 +14,13 @@ import IshmaelDetector.IshDetection;
import PamUtils.LatLong;
import PamguardMVC.PamDataBlock;
import PamguardMVC.PamDataUnit;
import generalDatabase.EmptyTableDefinition;
//import pamDatabase.SQLLogging;
//import PamguardMVC.RecyclingDataBlock;
import generalDatabase.PamDetectionLogging;
public class IshLocSqlLogging extends PamDetectionLogging {
IshLocControl ishLocControl;
PamTableDefinition tableDefinition;
PamTableItem systemDate, durationSecs, secSinceStart, peakHeight;
private PamTableItem latitude, longitude, refLatitude, refLongitude, x, y, z;
@ -30,7 +29,7 @@ public class IshLocSqlLogging extends PamDetectionLogging {
super(pamDataBlock, UPDATE_POLICY_WRITENEW);
this.ishLocControl = ishDetControl;
tableDefinition = getTableDefinition();
EmptyTableDefinition tableDefinition = getTableDefinition();
tableDefinition.addTableItem(latitude = new PamTableItem("Latitude", Types.DOUBLE));
tableDefinition.addTableItem(longitude = new PamTableItem("Longitude", Types.DOUBLE));
tableDefinition.addTableItem(refLatitude = new PamTableItem("ReferenceLatitude", Types.DOUBLE));

3
src/KernelSmoothing/KernelSmoothingParameters.java
View File

@ -4,6 +4,7 @@ import java.io.Serializable;
import PamModel.parametermanager.ManagedParameters;
import PamModel.parametermanager.PamParameterSet;
import PamModel.parametermanager.PamParameterSet.ParameterSetType;
public class KernelSmoothingParameters implements Serializable, Cloneable, ManagedParameters {
@ -25,7 +26,7 @@ public class KernelSmoothingParameters implements Serializable, Cloneable, Manag
@Override
public PamParameterSet getParameterSet() {
PamParameterSet ps = PamParameterSet.autoGenerate(this);
PamParameterSet ps = PamParameterSet.autoGenerate(this, ParameterSetType.DETECTOR);
return ps;
}

3
src/Localiser/DelayMeasurementParams.java
View File

@ -4,6 +4,7 @@ import java.io.Serializable;
import PamModel.parametermanager.ManagedParameters;
import PamModel.parametermanager.PamParameterSet;
import PamModel.parametermanager.PamParameterSet.ParameterSetType;
import fftFilter.FFTFilterParams;
/**
@ -157,7 +158,7 @@ public class DelayMeasurementParams implements Serializable, Cloneable, ManagedP
@Override
public PamParameterSet getParameterSet() {
PamParameterSet ps = PamParameterSet.autoGenerate(this);
PamParameterSet ps = PamParameterSet.autoGenerate(this, ParameterSetType.DETECTOR);
return ps;
}

3
src/Localiser/algorithms/genericLocaliser/MCMC/MCMCParams2.java
View File

@ -4,6 +4,7 @@ import java.io.Serializable;
import PamModel.parametermanager.ManagedParameters;
import PamModel.parametermanager.PamParameterSet;
import PamModel.parametermanager.PamParameterSet.ParameterSetType;
public class MCMCParams2 implements Serializable, Cloneable, ManagedParameters {
@ -126,7 +127,7 @@ public class MCMCParams2 implements Serializable, Cloneable, ManagedParameters
@Override
public PamParameterSet getParameterSet() {
PamParameterSet ps = PamParameterSet.autoGenerate(this);
PamParameterSet ps = PamParameterSet.autoGenerate(this, ParameterSetType.DETECTOR);
return ps;
}

3
src/Localiser/algorithms/genericLocaliser/MCMC/old/MCMCParams.java
View File

@ -4,6 +4,7 @@ import java.io.Serializable;
import PamModel.parametermanager.ManagedParameters;
import PamModel.parametermanager.PamParameterSet;
import PamModel.parametermanager.PamParameterSet.ParameterSetType;
public class MCMCParams implements Serializable, Cloneable, ManagedParameters {
@ -64,7 +65,7 @@ public class MCMCParams implements Serializable, Cloneable, ManagedParameters {
@Override
public PamParameterSet getParameterSet() {
PamParameterSet ps = PamParameterSet.autoGenerate(this);
PamParameterSet ps = PamParameterSet.autoGenerate(this, ParameterSetType.DETECTOR);
return ps;
}

3
src/Localiser/algorithms/timeDelayLocalisers/hyperbolic/HyperbolicParams.java
View File

@ -4,6 +4,7 @@ import java.io.Serializable;
import PamModel.parametermanager.ManagedParameters;
import PamModel.parametermanager.PamParameterSet;
import PamModel.parametermanager.PamParameterSet.ParameterSetType;
/**
@ -69,7 +70,7 @@ public class HyperbolicParams implements Serializable, Cloneable, ManagedParamet
@Override
public PamParameterSet getParameterSet() {
PamParameterSet ps = PamParameterSet.autoGenerate(this);
PamParameterSet ps = PamParameterSet.autoGenerate(this, ParameterSetType.DETECTOR);
return ps;
}

3
src/Localiser/controls/RawOrFFTParams.java
View File

@ -4,6 +4,7 @@ import java.io.Serializable;
import PamModel.parametermanager.ManagedParameters;
import PamModel.parametermanager.PamParameterSet;
import PamModel.parametermanager.PamParameterSet.ParameterSetType;
import Spectrogram.WindowFunction;
/**
@ -104,7 +105,7 @@ public class RawOrFFTParams implements Serializable, Cloneable, RawOrFFTParamsIn
@Override
public PamParameterSet getParameterSet() {
PamParameterSet ps = PamParameterSet.autoGenerate(this);
PamParameterSet ps = PamParameterSet.autoGenerate(this, ParameterSetType.DETECTOR);
return ps;
}

8
src/Map/GebcoMapFile.java
View File

@ -85,8 +85,16 @@ public class GebcoMapFile implements MapFileManager {
* @see Map.MapFile#readFileData(java.io.File)
*/
public boolean readFileData(File file) {
try {
return readMapFile(file, true);
}
catch (Exception e) {
// trap error someone reported at end November 22. Suspect it was their corrupt map file causing problems.
String err = String.format("Map file %s is missing or corrupt and cannot be loaded", file.getName());
WarnOnce.showWarning("Map File Error", err, WarnOnce.OK_OPTION);
return false;
}
}
private boolean readMapFile(File gebcoFile, boolean readContours) {

3
src/Map/MapDetectionsParameters.java
View File

@ -7,6 +7,7 @@ import java.util.ListIterator;
import PamModel.parametermanager.ManagedParameters;
import PamModel.parametermanager.PamParameterSet;
import PamModel.parametermanager.PamParameterSet.ParameterSetType;
/**
* PArameters for MapDetectionsManager which
@ -65,7 +66,7 @@ public class MapDetectionsParameters implements Serializable, Cloneable, Managed
@Override
public PamParameterSet getParameterSet() {
PamParameterSet ps = PamParameterSet.autoGenerate(this);
PamParameterSet ps = PamParameterSet.autoGenerate(this, ParameterSetType.DISPLAY);
return ps;
}

3
src/Map/MapParameters.java
View File

@ -27,6 +27,7 @@ import java.lang.reflect.Field;
import Array.Hydrophone;
import PamModel.parametermanager.ManagedParameters;
import PamModel.parametermanager.PamParameterSet;
import PamModel.parametermanager.PamParameterSet.ParameterSetType;
import PamModel.parametermanager.PrivatePamParameterData;
public class MapParameters implements Serializable, Cloneable, ManagedParameters {
@ -301,7 +302,7 @@ public class MapParameters implements Serializable, Cloneable, ManagedParameters
@Override
public PamParameterSet getParameterSet() {
PamParameterSet ps = PamParameterSet.autoGenerate(this);
PamParameterSet ps = PamParameterSet.autoGenerate(this, ParameterSetType.DISPLAY);
return ps;
}

45
src/Map/MapRectProjector.java
View File

@ -20,9 +20,15 @@
*/
package Map;
import java.awt.Point;
import java.awt.event.MouseMotionAdapter;
import java.awt.geom.AffineTransform;
import java.util.ListIterator;
import GPS.GPSControl;
import GPS.GPSDataBlock;
import GPS.GpsDataUnit;
import PamController.PamController;
import PamUtils.Coordinate3d;
import PamUtils.LatLong;
import PamUtils.PamCoordinate;
@ -385,6 +391,45 @@ public class MapRectProjector extends MapProjector {
return xTrans;
}
@Override
public String getHoverText(Point mousePoint, int ploNumberMatch) {
String text = super.getHoverText(mousePoint, ploNumberMatch);
if (text == null) {
return findGpsTrackText(mousePoint, ploNumberMatch);
}
else {
return text;
}
}
private String findGpsTrackText(Point mousePoint, int ploNumberMatch) {
GPSControl gpsControl = GPSControl.getGpsControl();
if (gpsControl == null) {
return null;
}
LatLong currentPos = getDataPosition(new Coordinate3d(mousePoint.x, mousePoint.y));
GPSDataBlock gpsDataBlock = gpsControl.getGpsDataBlock();
double dist = Double.MAX_VALUE;
GpsDataUnit closest = null;
ListIterator<GpsDataUnit> it = gpsDataBlock.getListIterator(0);
while (it.hasNext()) {
GpsDataUnit gpsUnit = it.next();
double r = gpsUnit.getGpsData().distanceToMetres(currentPos);
if (r < dist) {
dist = r;
closest = gpsUnit;
}
}
if (closest == null) {
return null;
}
double rPix = dist*this.pixelsPerMetre;
if (rPix > 20) {
return null;
}
return closest.getSummaryString();
}
}

3
src/Map/gridbaselayer/GridbaseParameters.java
View File

@ -4,6 +4,7 @@ import java.io.Serializable;
import PamModel.parametermanager.ManagedParameters;
import PamModel.parametermanager.PamParameterSet;
import PamModel.parametermanager.PamParameterSet.ParameterSetType;
public class GridbaseParameters implements Cloneable, Serializable, ManagedParameters {
@ -25,7 +26,7 @@ public class GridbaseParameters implements Cloneable, Serializable, ManagedParam
@Override
public PamParameterSet getParameterSet() {
PamParameterSet ps = PamParameterSet.autoGenerate(this);
PamParameterSet ps = PamParameterSet.autoGenerate(this, ParameterSetType.DISPLAY);
return ps;
}

3
src/NMEA/NMEAParameters.java
View File

@ -24,6 +24,7 @@ import java.io.Serializable;
import PamModel.parametermanager.ManagedParameters;
import PamModel.parametermanager.PamParameterSet;
import PamModel.parametermanager.PamParameterSet.ParameterSetType;
import serialComms.jserialcomm.PJSerialComm;
public class NMEAParameters implements Serializable, Cloneable, ManagedParameters {
@ -149,7 +150,7 @@ public class NMEAParameters implements Serializable, Cloneable, ManagedParameter
@Override
public PamParameterSet getParameterSet() {
PamParameterSet ps = PamParameterSet.autoGenerate(this);
PamParameterSet ps = PamParameterSet.autoGenerate(this, ParameterSetType.DETECTOR);
return ps;
}

7
src/PamController/OfflineDataStore.java
View File

@ -33,6 +33,13 @@ public interface OfflineDataStore {
*/
public String getDataSourceName();
/**
* Get the data location. This may be a specific file, or might be a folder
* if data are in many files, a URI, etc.
* @return store locations
*/
public String getDataLocation();
/**
* Load data for a given datablock between two time limits.
* @param dataBlock datablock owner of the data

20
src/PamController/PamControlledUnit.java
View File

@ -23,6 +23,7 @@ package PamController;
import java.awt.Component;
import java.awt.Frame;
import java.util.ArrayList;
import java.util.List;
import javax.swing.JFrame;
import javax.swing.JMenu;
@ -39,7 +40,9 @@ import org.w3c.dom.Element;
import PamController.status.ModuleStatus;
import PamController.status.ModuleStatusManager;
import PamController.status.ProcessCheck;
import PamModel.PamModel;
import PamModel.PamModuleInfo;
import PamModel.PamPluginInterface;
import PamView.ClipboardCopier;
import PamView.PamGui;
import PamView.PamSidePanel;
@ -881,6 +884,23 @@ public abstract class PamControlledUnit implements SettingsNameProvider {
return instanceIndex;
}
/**
* Get detail if this is a plugin.
* @return plugin detail, or null if it's not a plugin.
*/
public PamPluginInterface getPlugin() {
List<PamPluginInterface> pluginList = ((PamModel) PamController.getInstance().getModelInterface()).getPluginList();
if (pluginList == null) {
return null;
}
for (PamPluginInterface plugin : pluginList) {
if (plugin.getClassName().equals(this.getClass().getName())) {
return plugin;
}
}
return null;
}
/**
* The PamConfiguration holds the master list of modules which form part of a
* configuration. It should be accessed to find list of datablocks, etc. rather than

3
src/PamController/PamControlledUnitSettings.java
View File

@ -36,6 +36,7 @@ import org.apache.commons.io.input.ClassLoaderObjectInputStream;
import PamModel.PamModel;
import PamModel.parametermanager.ManagedParameters;
import PamModel.parametermanager.PamParameterSet;
import PamModel.parametermanager.PamParameterSet.ParameterSetType;
import PamView.dialog.warn.WarnOnce;
@ -398,7 +399,7 @@ public class PamControlledUnitSettings implements Serializable, ManagedParameter
@Override
public PamParameterSet getParameterSet() {
PamParameterSet ps = PamParameterSet.autoGenerate(this);
PamParameterSet ps = PamParameterSet.autoGenerate(this, ParameterSetType.DETECTOR);
return ps;
}

29
src/PamController/PamController.java
View File

@ -57,6 +57,7 @@ import fftManager.FFTDataUnit;
import generalDatabase.DBControlUnit;
import javafx.application.Platform;
import javafx.stage.Stage;
import metadata.MetaDataContol;
import Array.ArrayManager;
import PamController.command.MulticastController;
import PamController.command.NetworkController;
@ -452,6 +453,7 @@ public class PamController implements PamControllerInterface, PamSettings {
System.out.println("");
System.out.println("Note - ignore the following SLF4J warn/error messages, they are not applicable to this application");
ArrayManager.getArrayManager(); // create the array manager so that it get's it's settings
MetaDataContol.getMetaDataControl();
/**
* Check for archived files and unpack automatically.
@ -1161,6 +1163,8 @@ public class PamController implements PamControllerInterface, PamSettings {
}
if (saveSettings) {
startTime = PamCalendar.getSessionStartTime();
// System.out.printf("Saving settings for start time %s\n", PamCalendar.formatDBDateTime(startTime));
saveSettings(PamCalendar.getSessionStartTime());
}
@ -1319,6 +1323,9 @@ public class PamController implements PamControllerInterface, PamSettings {
}
guiFrameManager.pamEnded();
long stopTime = PamCalendar.getTimeInMillis();
saveEndSettings(stopTime);
// no good having this here since it get's called at the end of every file.
// if (GlobalArguments.getParam(PamController.AUTOEXIT) != null) {
//// can exit here, since we've auto started, can auto exit.
@ -1437,6 +1444,26 @@ public class PamController implements PamControllerInterface, PamSettings {
pamConfiguration.saveSettings(timeNow);
}
/**
* Gets called in pamStart and may / will attempt to store all
* PAMGUARD settings via the database and binary storage modules.
*/
private void saveEndSettings(long timeNow) {
// System.out.printf("Updating settings with end time %s\n", PamCalendar.formatDBDateTime(timeNow));
ArrayList<PamControlledUnit> pamControlledUnits = pamConfiguration.getPamControlledUnits();
PamControlledUnit pcu;
PamSettingsSource settingsSource;
for (int iU = 0; iU < pamControlledUnits.size(); iU++) {
pcu = pamControlledUnits.get(iU);
if (PamSettingsSource.class.isAssignableFrom(pcu.getClass())) {
settingsSource = (PamSettingsSource) pcu;
settingsSource.saveEndSettings(timeNow);
}
}
}
/**
* Export configuration into an XML file
* @param parentFrame
@ -2407,7 +2434,7 @@ public class PamController implements PamControllerInterface, PamSettings {
if (dbc == null) {
return null;
}
return dbc.getDatabaseName();
return dbc.getLongDatabaseName();
}
return null;
}

20
src/PamController/PamSensor.java Normal file
View File

@ -0,0 +1,20 @@
package PamController;
/**
* Interface to define modules which can be considered as sensors of some sort.
* e.g. depth and orientation modules and the SoundTrap clickdetecotr
* @author dg50
*
*/
public interface PamSensor {
public String getUnitName();
public String getUnitType();
public String getSensorDescription();
public String getSensorId();
}

2
src/PamController/PamSettingManager.java
View File

@ -476,7 +476,7 @@ public class PamSettingManager {
*/
public PamSettings findSettingsOwner(String unitType, String unitName, String unitClassName) {
for (PamSettings owner:owners) {
if (owner.getClass() != null) {
if (owner.getClass() != null && unitClassName != null) {
if (owner.getClass().getName().equals(unitClassName) == false) {
continue;
}

8
src/PamController/PamSettingsSource.java
View File

@ -20,6 +20,14 @@ public interface PamSettingsSource {
*/
public boolean saveStartSettings(long timeNow);
/**
* Save settings when processing ends.
* This may just be an update of the settings saves with saveStartSettings, e.g. an end time.
* @param timeNow
* @return true if saved correctly.
*/
public boolean saveEndSettings(long timeNow);
/**
* Get the number of different settings
* within the settings source.

2
src/PamController/PamguardVersionInfo.java
View File

@ -31,7 +31,7 @@ public class PamguardVersionInfo {
* Version number, major version.minorversion.sub-release.
* Note: can't go higher than sub-release 'f'
*/
static public final String version = "2.02.09e";
static public final String version = "2.02.09f";
/**
* Release date

11
src/PamController/UsedModuleInfo.java
View File

@ -4,6 +4,7 @@ import java.io.Serializable;
import PamModel.parametermanager.ManagedParameters;
import PamModel.parametermanager.PamParameterSet;
import PamModel.parametermanager.PamParameterSet.ParameterSetType;
/**
* Very simple class used in an ArrayList of used modules that
@ -54,8 +55,16 @@ public class UsedModuleInfo implements Serializable, ManagedParameters {
@Override
public PamParameterSet getParameterSet() {
PamParameterSet ps = PamParameterSet.autoGenerate(this);
PamParameterSet ps = PamParameterSet.autoGenerate(this, ParameterSetType.DETECTOR);
return ps;
}
/**
* Get the unit name of the module being imported.
* @return
*/
public String getUnitName() {
return unitName;
}
}

27
src/PamController/settings/SettingsImport.java
View File

@ -116,14 +116,16 @@ public class SettingsImport {
*/
private PamControlledUnit importReplace(SettingsImportGroup importGroup, String replaceModule) {
PamControlledUnitSettings mainSet = importGroup.getMainSettings();
PamControlledUnit unit = PamController.getInstance().findControlledUnit(mainSet.getUnitType(), replaceModule);
UsedModuleInfo importInfo = importGroup.getUsedModuleInfo();
PamControlledUnit unit = PamController.getInstance().findControlledUnit(importInfo.getUnitType(), replaceModule);
if (unit == null) {
System.out.println("Unable to find " + mainSet.getUnitType() + " " + mainSet.getUnitName() + " for settings replacement");
System.out.println("Unable to find " + importInfo.getUnitType() + " " + importInfo.getUnitName() + " for settings replacement");
return null;
}
// check we can cast it to PamSettings
if (PamSettings.class.isAssignableFrom(unit.getClass())) {
if (PamSettings.class.isAssignableFrom(unit.getClass()) && mainSet != null) {
try {
mainSet.setUnitName(replaceModule);
((PamSettings) unit).restoreSettings(mainSet);
}
catch (Exception e) {
@ -132,7 +134,7 @@ public class SettingsImport {
System.err.println(e.getMessage());
}
}
loadSubUnitSettings(importGroup, mainSet.getUnitName());
loadSubUnitSettings(importGroup, replaceModule);
return unit;
}
@ -149,7 +151,15 @@ public class SettingsImport {
}
PamSettingManager setManager = PamSettingManager.getInstance();
for (PamControlledUnitSettings pamSettings:subSets) {
PamSettings owner = setManager.findSettingsOwner(pamSettings.getUnitType(), unitName, pamSettings.getOwnerClassName());
/*
* class name in pamSettings is no longer correct, so cannot use pamSettings.getOwnerClassName().
* but the classnames of all the sub modules are unknown (and will be different form the unit class name
* which can be got from importGroup.getPamModuleInfo().getClassName
* so will have to do this only on the unit type and name and hope for no conflicts (catch exception).
*/
// PamModuleInfo moduleInfo = importGroup.getPamModuleInfo();
// String className = moduleInfo.getClassName();
PamSettings owner = setManager.findSettingsOwner(pamSettings.getUnitType(), unitName, null);
if (owner == null) {
System.out.println(String.format("Cannot find settings owner for %s %s in current model", pamSettings.getUnitType(), unitName));
continue;
@ -168,7 +178,8 @@ public class SettingsImport {
private PamControlledUnit importNew(SettingsImportGroup importGroup) {
PamControlledUnitSettings mainSet = importGroup.getMainSettings();
String moduleName = mainSet.getUnitName();
UsedModuleInfo importInfo = importGroup.getUsedModuleInfo();
String moduleName = importInfo.unitName;
// check we've got a name that doesnt' exist and replace it if if does.
// int startChar = 0;
@ -199,11 +210,11 @@ public class SettingsImport {
PamControlledUnit unit = PamController.getInstance().addModule(PamController.getMainFrame(), moduleInfo);
if (unit == null) {
System.out.println("Unable to find " + mainSet.getUnitType() + " " + mainSet.getUnitName() + " for settings replacement");
System.out.println("Unable to find " + importInfo.getUnitType() + " " + importInfo.getUnitName() + " for settings replacement");
return null;
}
// check we can cast it to PamSettings
if (PamSettings.class.isAssignableFrom(unit.getClass())) {
if (PamSettings.class.isAssignableFrom(unit.getClass()) && mainSet != null) {
try {
mainSet.setUnitName(unit.getUnitName()); // need to force the unit name for some modules.
((PamSettings) unit).restoreSettings(mainSet);

8
src/PamController/settings/SettingsImportDialog.java
View File

@ -195,12 +195,14 @@ public class SettingsImportDialog extends PamDialog {
@Override
public Object getValueAt(int rowIndex, int columnIndex) {
SettingsImportGroup set = groupedSettings.get(rowIndex);
PamControlledUnitSettings mainSet = set.getMainSettings();
// PamControlledUnitSettings mainSet = set.getMainSettings();
switch (columnIndex) {
case 0:
return mainSet.getUnitType();
return set.getUsedModuleInfo().getUnitType();
// return mainSet.getUnitType();
case 1:
return mainSet.getUnitName();
return set.getUsedModuleInfo().unitName;
// return mainSet.getUnitName();
case 2:
// return choiceBoxes[rowIndex].getSelectedItem().toString();
return set.getImportChoice().toString();

4
src/PamController/settings/SettingsImportGroup.java
View File

@ -82,8 +82,10 @@ public class SettingsImportGroup {
try {
ownerClass = Class.forName(usedModuleInfo.className);
} catch (ClassNotFoundException e) {
System.out.println("Unknown class in loaded settings: " + usedModuleInfo.className);
// TODO Auto-generated catch block
e.printStackTrace();
// e.printStackTrace();
}
ArrayList<PamControlledUnit> existingModules =
PamController.getInstance().findControlledUnits(ownerClass);

140
src/PamController/settings/output/xml/PamguardXMLWriter.java
View File

@ -29,6 +29,7 @@ import javax.xml.transform.stream.StreamResult;
import org.w3c.dom.Document;
import org.w3c.dom.Element;
import org.w3c.dom.NamedNodeMap;
import com.sun.javafx.runtime.VersionInfo;
@ -42,12 +43,14 @@ import PamController.PamguardVersionInfo;
import PamModel.parametermanager.ManagedParameters;
import PamModel.parametermanager.PamParameterData;
import PamModel.parametermanager.PamParameterSet;
import PamModel.parametermanager.PamParameterSet.ParameterSetType;
import PamUtils.PamCalendar;
import PamUtils.XMLUtils;
import PamguardMVC.PamDataBlock;
import PamguardMVC.PamDataUnit;
import PamguardMVC.PamProcess;
import binaryFileStorage.BinaryStore;
import tethys.TethysControl;
/**
* Class for writing XML configuration output to a file.
@ -62,6 +65,8 @@ public class PamguardXMLWriter implements PamSettings {
private static final Set<Class<?>> WRAPPER_TYPES = getWrapperTypes();
private XMLWriterSettings writerSettings = new XMLWriterSettings();
private boolean excludeDisplaySettings;
// private String xmlNameSpace;
private static PamguardXMLWriter singleInstance;
@ -84,6 +89,19 @@ public class PamguardXMLWriter implements PamSettings {
return singleInstance;
}
/**
* Recursively walk the tree and add a namespace to every
* single element.
* @param doc
* @param nameSpace
* @return
*/
public boolean addNameSpaceToElements(Document doc, Element el, String nameSpace) {
// el.setAttributeNS(nameSpace, nameSpace, nameSpace);
NamedNodeMap attributes = el.getAttributes();
return true;
}
/**
* Make a document with the options specified in writerSettings.
* @param time timestamp for document
@ -371,6 +389,32 @@ public class PamguardXMLWriter implements PamSettings {
* @return xml content as a a string.
*/
public String getAsString(Document doc) {
return getAsString(doc, true);
// try {
// DOMSource domSource = new DOMSource(doc);
// StringWriter writer = new StringWriter();
// StreamResult result = new StreamResult(writer);
// TransformerFactory tf = TransformerFactory.newInstance();
// Transformer transformer = tf.newTransformer();
// transformer.setOutputProperty(OutputKeys.METHOD, "xml");
// transformer.setOutputProperty(OutputKeys.ENCODING, "ISO-8859-1");
//// transformer.setOutputProperty(OutputKeys.OMIT_XML_DECLARATION, "yes");
// transformer.setOutputProperty(OutputKeys.INDENT, "yes");
// transformer.setOutputProperty("{http://xml.apache.org/xslt}indent-amount", "4");
// transformer.transform(domSource, result);
// return writer.toString();
// } catch (TransformerException e) {
// e.printStackTrace();
// return null;
// }
}
/**
* Get the xml document as a String.
* @param doc xml document
* @param indent Indent / format the document.
* @return xml content as a a string.
*/
public String getAsString(Document doc, boolean indent) {
try {
DOMSource domSource = new DOMSource(doc);
StringWriter writer = new StringWriter();
@ -380,7 +424,7 @@ public class PamguardXMLWriter implements PamSettings {
transformer.setOutputProperty(OutputKeys.METHOD, "xml");
transformer.setOutputProperty(OutputKeys.ENCODING, "ISO-8859-1");
// transformer.setOutputProperty(OutputKeys.OMIT_XML_DECLARATION, "yes");
transformer.setOutputProperty(OutputKeys.INDENT, "yes");
transformer.setOutputProperty(OutputKeys.INDENT, indent ? "yes" : "no");
transformer.setOutputProperty("{http://xml.apache.org/xslt}indent-amount", "4");
transformer.transform(domSource, result);
return writer.toString();
@ -411,8 +455,7 @@ public class PamguardXMLWriter implements PamSettings {
* @param pamSettingsUnit
* @return xml element
*/
private Element writeUnitSettings(Document doc, Element parent, PamSettings pamSettingsUnit) {
public Element writeUnitSettings(Document doc, Element parent, PamSettings pamSettingsUnit) {
int[] settingInds = findSettings(null, pamSettingsUnit.getUnitName());
PamSettings[] settingsObjects = null;
if (settingInds != null) {
@ -436,7 +479,7 @@ public class PamguardXMLWriter implements PamSettings {
* can be temporary settings objects when writing temporary settings from dialogs.
* @return new XML element.
*/
private Element writeUnitSettings(Document doc, Element parent, PamSettings pamSettingsUnit, PamSettings[] toWrite) {
public Element writeUnitSettings(Document doc, Element parent, PamSettings pamSettingsUnit, PamSettings[] toWrite) {
Element moduleData = doc.createElement("MODULE");
moduleData.setAttribute("Java.class", pamSettingsUnit.getClass().getName());
moduleData.setAttribute("UnitType", pamSettingsUnit.getUnitType());
@ -457,6 +500,9 @@ public class PamguardXMLWriter implements PamSettings {
Element settingEl = doc.createElement("CONFIGURATION");
moduleData.appendChild(settingEl);
for (int i = 0; i < toWrite.length; i++) {
if (wantObject(toWrite[i]) == false) {
continue;
}
Element setEl = writeSettings(doc, toWrite[i], new ArrayList<Object>());
if (setEl != null) {
settingEl.appendChild(setEl);
@ -467,6 +513,32 @@ public class PamguardXMLWriter implements PamSettings {
return moduleData;
}
/**
* USed by the Tethys writer to avoid writing display settings.
* @param pamSettings
* @return
*/
private boolean wantObject(PamSettings pamSettings) {
if (excludeDisplaySettings == false) {
return true;
}
Object obj = pamSettings.getSettingsReference();
if (obj == null) {
return false;
}
if (obj instanceof ManagedParameters) {
ManagedParameters managedParams = (ManagedParameters) obj;
PamParameterSet paramSet = managedParams.getParameterSet();
if (paramSet == null) {
return false;
}
if (paramSet.getParameterSetType() == ParameterSetType.DISPLAY && excludeDisplaySettings) {
return false;
}
}
return true;
}
/**
* Write settings for a settings object, using the standard retreived object
* from the settings.
@ -479,6 +551,14 @@ public class PamguardXMLWriter implements PamSettings {
return writeSettings(doc, pamSettings, pamSettings.getSettingsReference(), objectHierarchy);
}
public Document writeOneObject(Object data) {
Document doc = XMLUtils.createBlankDoc();
Element el = doc.createElement("Settings");
Element newel = writeObjectData(doc, el, data, new ArrayList<Object>());
doc.appendChild(newel);
return doc;
}
/**
* Write settings using an object of choice instead of the standard one from PamSettings.
* <br> can be useful in saving specific parameters.
@ -489,6 +569,7 @@ public class PamguardXMLWriter implements PamSettings {
* @return
*/
private Element writeSettings(Document doc, PamSettings pamSettings, Object data, ArrayList<Object> objectHierarchy) {
Element el = doc.createElement("SETTINGS");
el.setAttribute("Type", pamSettings.getUnitType());
el.setAttribute("Name", pamSettings.getUnitName());
@ -500,10 +581,13 @@ public class PamguardXMLWriter implements PamSettings {
return el;
}
private Element writeObjectData(Document doc, Element el, Object data, ArrayList<Object> objectHierarchy) {
public Element writeObjectData(Document doc, Element el, Object data, ArrayList<Object> objectHierarchy) {
if (data == null) {
return null;
}
if (objectHierarchy == null) {
objectHierarchy = new ArrayList<>();
}
if (objectHierarchy.contains(data)) {
// just write the reference, but nothing else or we'll end up in an infinite loop of objects.
Element e = doc.createElement("Object");
@ -526,7 +610,9 @@ public class PamguardXMLWriter implements PamSettings {
return null;
}
if (objectHierarchy != null) {
objectHierarchy.add(data);
}
for (PamParameterData pamParam:parameterSet.getParameterCollection()) {
try {
Object paramData = pamParam.getData();
@ -765,9 +851,10 @@ public class PamguardXMLWriter implements PamSettings {
processData.setAttribute("Name", process.getProcessName());
PamDataBlock source = process.getParentDataBlock();
if (source != null) {
Element inputEl = doc.createElement("Input");
inputEl.setAttribute("Name", source.getLongDataName());
inputEl.setAttribute("Channels", String.format("0x%X", source.getChannelMap()));
Element inputEl = source.getDataBlockXML(doc);
// Element inputEl = doc.createElement("Input");
// inputEl.setAttribute("Name", source.getLongDataName());
// inputEl.setAttribute("Channels", String.format("0x%X", source.getChannelMap()));
processData.appendChild(inputEl);
}
int nOut = process.getNumOutputDataBlocks();
@ -797,9 +884,18 @@ public class PamguardXMLWriter implements PamSettings {
* @return indexes of settings.
*/
private int[] findSettings(String type, String name) {
if (settingsSets == null) {
makeSettingsList();
if (settingsSets == null) {
return null;
}
}
if (usedSettingsSets == null) {
usedSettingsSets = new boolean[settingsSets.size()];
}
else if (usedSettingsSets.length < settingsSets.size()) {
usedSettingsSets = Arrays.copyOf(usedSettingsSets, settingsSets.size());
}
int[] found = new int[settingsSets.size()];
int nFound = 0;
for (int i = 0; i < settingsSets.size(); i++) {
@ -818,7 +914,7 @@ public class PamguardXMLWriter implements PamSettings {
return Arrays.copyOf(found, nFound);
}
private ArrayList<PamSettings> makeSettingsList() {
public ArrayList<PamSettings> makeSettingsList() {
PamSettingManager settingsManager = PamSettingManager.getInstance();
settingsSets = settingsManager.getOwners();
if (settingsSets == null) {
@ -850,6 +946,14 @@ public class PamguardXMLWriter implements PamSettings {
return doc;
}
/**
* Is this element a writable type ? Basically, this means
* that it's a primitive of some sort. Otherwise it's
* probably an object and may even be a list in which case
* it will need treating differently.
* @param clazz
* @return
*/
public static boolean isWritableType(Class<?> clazz)
{
if (clazz.isEnum()) return true;
@ -940,5 +1044,23 @@ public class PamguardXMLWriter implements PamSettings {
return true;
}
/**
* @return the excludeDisplaySettings
*/
public boolean isExcludeDisplaySettings() {
return excludeDisplaySettings;
}
/**
* @param excludeDisplaySettings the excludeDisplaySettings to set
*/
public void setExcludeDisplaySettings(boolean excludeDisplaySettings) {
this.excludeDisplaySettings = excludeDisplaySettings;
}
// public void setStaticNameSpace(String xmlNameSpace) {
// this.xmlNameSpace = xmlNameSpace;
// }
}

3
src/PamController/settings/output/xml/XMLWriterSettings.java
View File

@ -4,6 +4,7 @@ import java.io.Serializable;
import PamModel.parametermanager.ManagedParameters;
import PamModel.parametermanager.PamParameterSet;
import PamModel.parametermanager.PamParameterSet.ParameterSetType;
public class XMLWriterSettings implements Serializable, Cloneable, ManagedParameters {
@ -34,7 +35,7 @@ public class XMLWriterSettings implements Serializable, Cloneable, ManagedParame
@Override
public PamParameterSet getParameterSet() {
PamParameterSet ps = PamParameterSet.autoGenerate(this);
PamParameterSet ps = PamParameterSet.autoGenerate(this, ParameterSetType.DISPLAY);
return ps;
}

3
src/PamController/soundMedium/GlobalMediumParams.java
View File

@ -5,6 +5,7 @@ import java.io.Serializable;
import PamController.soundMedium.GlobalMedium.SoundMedium;
import PamModel.parametermanager.ManagedParameters;
import PamModel.parametermanager.PamParameterSet;
import PamModel.parametermanager.PamParameterSet.ParameterSetType;
/**
* Stores parameters for the current medium.
@ -41,7 +42,7 @@ public class GlobalMediumParams implements Serializable, Cloneable, ManagedParam
@Override
public PamParameterSet getParameterSet() {
PamParameterSet ps = PamParameterSet.autoGenerate(this);
PamParameterSet ps = PamParameterSet.autoGenerate(this, ParameterSetType.DISPLAY);
return ps;
}

48
src/PamModel/PamModel.java
View File

@ -44,11 +44,15 @@ import whistlesAndMoans.AbstractWhistleDataUnit;
import fftManager.FFTDataUnit;
import fftManager.PamFFTControl;
import group3dlocaliser.Group3DLocaliserControl;
import metadata.MetaDataContol;
import meygenturbine.MeygenTurbine;
import printscreen.PrintScreenControl;
import rockBlock.RockBlockControl;
import tethys.TethysControl;
import turbineops.TurbineOperationControl;
import GPS.GpsDataUnit;
import Map.MapController;
import Map.gridbaselayer.GridbaseControl;
import NMEA.NMEADataUnit;
import PamController.PamControlledUnitSettings;
import PamController.PamController;
@ -62,6 +66,7 @@ import PamguardMVC.PamDataBlock;
import analogarraysensor.ArraySensorControl;
import backupmanager.BackupManager;
import beamformer.continuous.BeamFormerControl;
import beamformer.localiser.BeamFormLocaliserControl;
import bearinglocaliser.BearingLocaliserControl;
import binaryFileStorage.SecondaryBinaryStore;
import cepstrum.CepstrumControl;
@ -455,6 +460,19 @@ final public class PamModel implements PamSettings {
mi.setModulesMenuGroup(utilitiesGroup);
mi.setMaxNumber(1);
// mi = PamModuleInfo.registerControlledUnit(MetaDataContol.class.getName(), MetaDataContol.unitType);
// mi.setToolTipText("Project Meta Data");
// mi.setModulesMenuGroup(utilitiesGroup);
// mi.setMaxNumber(1);
if (isViewer) {
mi = PamModuleInfo.registerControlledUnit(TethysControl.class.getName(), TethysControl.defaultName);
mi.setToolTipText("Interface to Tethys Database");
mi.setModulesMenuGroup(utilitiesGroup);
mi.setMaxNumber(1);
}
/*
* ************* End Utilities Group *******************
*/
@ -1077,6 +1095,8 @@ final public class PamModel implements PamSettings {
* PamModel !
*/
// pluginList.add(new MorlaisWP1aPlugin());
// Load up whatever default classloader was used to create this class. Must use the same classloader
// for all plugins, or else we will not be able to create proper dependencies between them or be able
// to save properties in the psf file. Found this problem because ipiDemo requires the
@ -1143,11 +1163,30 @@ final public class PamModel implements PamSettings {
// to add that URL to the default classloader path.
URL newURL = jarList.get(i).toURI().toURL();
// original method
// Method method = URLClassLoader.class.getDeclaredMethod("addURL", URL.class);
// method.setAccessible(true);
// method.invoke(cl, newURL);
// first fix attempt - create a brand new URLClassLoader. As expected, we get a ClassCastException when trying
// to load the parameters so we can't save params using this method
// URL[] newURLArray = new URL[1];
// newURLArray[0] = newURL;
// cl = new URLClassLoader(newURLArray);
// second attempt - custom class loader with the system app loader specified as the parent. Loads controlled unit, but
// as before it doesn't load the parameters
classLoader.addURL(newURL);
// third attempt
// Class<?> genericClass = cl.getClass();
// Method method = genericClass.getSuperclass().getDeclaredMethod("addURL", new Class[] {URL.class});
// method.setAccessible(true);
// method.invoke(cl, new Object[] {newURL});
// Save the name of the class to the global pluginBeingLoaded variable, and load the class.
this.setPluginBeingLoaded(className);
// Class c = cl.loadClass(className);
@ -1228,8 +1267,9 @@ final public class PamModel implements PamSettings {
"for help.<p>" +
"This plug-in will not be available for loading";
String help = null;
int ans = WarnOnce.showWarning(PamController.getInstance().getGuiFrameManager().getFrame(0), title, msg, WarnOnce.WARNING_MESSAGE, help, e1);
int ans = WarnOnce.showWarning(PamController.getMainFrame(), title, msg, WarnOnce.WARNING_MESSAGE, help, e1);
System.err.println("Exception while loading " + className);
System.err.println(e1.getMessage());
continue;
}
}
@ -1242,7 +1282,7 @@ final public class PamModel implements PamSettings {
"for help.<p>" +
"This plug-in will not be available for loading";
String help = null;
int ans = WarnOnce.showWarning(PamController.getInstance().getGuiFrameManager().getFrame(0), title, msg, WarnOnce.WARNING_MESSAGE, help, ex);
int ans = WarnOnce.showWarning(PamController.getMainFrame(), title, msg, WarnOnce.WARNING_MESSAGE, help, ex);
System.err.println("Exception while loading " + jarList.get(i).getName());
continue;
}
@ -1267,7 +1307,7 @@ final public class PamModel implements PamSettings {
// instantiate the plugin control class using the custom class loader
try {
// File classFile = new File(pf.getJarFile());
File classFile = new File(pf.getJarFile());
//URLClassLoader cl = new URLClassLoader(new URL[]{classFile.toURI().toURL()});
// mi = PamModuleInfo.registerControlledUnit(pf.getClassName(), pf.getDescription(),cl);
mi = PamModuleInfo.registerControlledUnit(pf.getClassName(), pf.getDescription(),classLoader);
@ -1333,7 +1373,7 @@ final public class PamModel implements PamSettings {
"for help.<p>" +
"This plug-in will not be available for loading";
String help = null;
int ans = WarnOnce.showWarning(PamController.getInstance().getGuiFrameManager().getFrame(0), title, msg, WarnOnce.WARNING_MESSAGE, help, e1);
int ans = WarnOnce.showWarning(PamController.getMainFrame(), title, msg, WarnOnce.WARNING_MESSAGE, help, e1);
System.err.println("Exception while loading " + pf.getDefaultName());
pluginList.remove(pf);
continue;

3
src/PamModel/PamModelSettings.java
View File

@ -4,6 +4,7 @@ import java.io.Serializable;
import PamModel.parametermanager.ManagedParameters;
import PamModel.parametermanager.PamParameterSet;
import PamModel.parametermanager.PamParameterSet.ParameterSetType;
public class PamModelSettings implements Cloneable, Serializable, ManagedParameters {
@ -74,7 +75,7 @@ public class PamModelSettings implements Cloneable, Serializable, ManagedParamet
@Override
public PamParameterSet getParameterSet() {
PamParameterSet ps = PamParameterSet.autoGenerate(this);
PamParameterSet ps = PamParameterSet.autoGenerate(this, ParameterSetType.DETECTOR);
return ps;
}

52
src/PamModel/parametermanager/PamParameterData.java
View File

@ -34,6 +34,11 @@ abstract public class PamParameterData {
*/
private String postTitle;
/**
* field length for automatic dialogs.
*/
private int fieldLength;
/**
* @param parentObject
@ -45,6 +50,21 @@ abstract public class PamParameterData {
this.field = field;
}
/**
* @param parentObject
* @param field
* @param shortName
* @param toolTip
* @param fieldLength length of text in automatic dialogs.
*/
public PamParameterData(Object parentObject, Field field, String shortName, String toolTip, int fieldLength) {
super();
this.field = field;
this.shortName = shortName;
this.toolTip = toolTip;
this.fieldLength = fieldLength;
}
/**
* @param parentObject
* @param field
@ -58,7 +78,6 @@ abstract public class PamParameterData {
this.toolTip = toolTip;
}
/**
* @param shortName the shortName to set
*/
@ -66,6 +85,20 @@ abstract public class PamParameterData {
this.shortName = shortName;
}
/**
* Set info about a parameter
* @param shortName short name, e.g. to use in a dialog
* @param postTitle post title, e.g. text coming after a data entry field in a dialog
* @param toolTip tool tip to display over the component in a dialog.
* @param fieldLength length of text in automatic dialogs.
*/
public void setInfo(String shortName, String postTitle, String toolTip, int fieldLength) {
this.shortName = shortName;
this.postTitle = postTitle;
this.toolTip = toolTip;
this.fieldLength = fieldLength;
}
/**
* Set info about a parameter
* @param shortName short name, e.g. to use in a dialog
@ -136,6 +169,9 @@ abstract public class PamParameterData {
* @return a short name for the field, suitable for use in dialogs.
*/
public String getShortName() {
if (shortName == null) {
return getFieldName();
}
return shortName;
}
@ -166,5 +202,19 @@ abstract public class PamParameterData {
return String.format("Param %s class %s", getFieldName(), getDataClass());
}
/**
* @return the fieldLength
*/
public int getFieldLength() {
return fieldLength;
}
/**
* @param fieldLength the fieldLength to set
*/
public void setFieldLength(int fieldLength) {
this.fieldLength = fieldLength;
}
}

7
src/PamModel/parametermanager/PamParameterDataGetter.java
View File

@ -59,9 +59,12 @@ public class PamParameterDataGetter extends PrivatePamParameterData {
if (setter == null) {
return false;
}
// need to convert the type
Object convObj = convertStringType(data);
try {
setter.invoke(getParentObject(), data);
} catch (IllegalAccessException | IllegalArgumentException | InvocationTargetException e) {
Object parentObj = getParentObject();
setter.invoke(parentObj, convObj);
} catch (InvocationTargetException e) {
e.printStackTrace();
return false;
}

24
src/PamModel/parametermanager/PamParameterSet.java
View File

@ -29,6 +29,9 @@ public class PamParameterSet {
private static boolean printDebug = false;
public enum ParameterSetType {DETECTOR, DISPLAY};
private ParameterSetType parameterSetType;
/**
* Standard modifiers to exclude. This is important for many classes which will tend to
* do crazy things such as incorporate ALL of their final fields, e.g. when a Color
@ -55,8 +58,10 @@ public class PamParameterSet {
* in the STANDARD_MODIFIER_EXCLUSIONS list (FINAL or STATIC).
* @return Created parameter set.
*/
public static PamParameterSet autoGenerate(Object parentObject) {
return autoGenerate(parentObject, STANDARD_MODIFIER_EXCLUSIONS);
public static PamParameterSet autoGenerate(Object parentObject, ParameterSetType parameterSetType) {
PamParameterSet paramSet = autoGenerate(parentObject, STANDARD_MODIFIER_EXCLUSIONS);
paramSet.setParameterSetType(parameterSetType);
return paramSet;
}
/**
@ -286,4 +291,19 @@ public class PamParameterSet {
public PamParameterData removeParameterData(String paramName) {
return parameterDatas.remove(paramName);
}
/**
* @return the parameterSetType
*/
public ParameterSetType getParameterSetType() {
return parameterSetType;
}
/**
* @param parameterSetType the parameterSetType to set
*/
public void setParameterSetType(ParameterSetType parameterSetType) {
this.parameterSetType = parameterSetType;
}
}

73
src/PamModel/parametermanager/ParameterSetManager.java Normal file
View File

@ -0,0 +1,73 @@
package PamModel.parametermanager;
import java.awt.Window;
import java.awt.event.ActionEvent;
import java.awt.event.ActionListener;
import javax.swing.JMenuItem;
import PamModel.parametermanager.swing.ManagedParameterDialog;
import generalDatabase.parameterstore.ParameterDatabaseStore;
/**
* Just about everything giving overall control of some managed parameters.
* May be a bit too specific on first cut and need to be abstracted.
* Testing on 'Deployment' data.
* @author dg50
*
* @param <T>
*/
public class ParameterSetManager<T extends ManagedParameters> {
private T managedParams;
private String name;
public ParameterSetManager(T defaultParams, String name) {
setManagedParams(defaultParams);
this.name = name;
// if (managedParams == null) {
// managedParams = new T();
// }
}
/**
* @return the managedParams
*/
public T getManagedParams() {
return managedParams;
}
/**
* @param managedParams the managedParams to set
*/
public void setManagedParams(T managedParams) {
this.managedParams = managedParams;
}
public JMenuItem getMenuItem(Window parent) {
if (managedParams == null) {
return null;
}
JMenuItem menuItem = new JMenuItem(name + " ...");
menuItem.addActionListener(new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
showDialog(parent);
}
});
return menuItem;
}
protected void showDialog(Window parent) {
ManagedParameterDialog<T> dialog = new ManagedParameterDialog<T>(parent, name, managedParams);
T newParams = dialog.showDialog(parent, name, managedParams);
if (newParams != null) {
ParameterDatabaseStore paramDatabase = new ParameterDatabaseStore("MetaData");
paramDatabase.saveParameterSet(newParams);
}
}
}

44
src/PamModel/parametermanager/PrivatePamParameterData.java
View File

@ -1,6 +1,7 @@
package PamModel.parametermanager;
import java.lang.reflect.Field;
import java.lang.reflect.Type;
/**
* Abstract instance of PamParameterDataInterface which implements everything
@ -36,9 +37,48 @@ public abstract class PrivatePamParameterData extends PamParameterData {
* This should really be implemented in every concrete class, but no time to do that now. Aim to delete
* this function here, then go through and implement everywhere ...
*/
return false;
// return false;
Object convData = convertStringType(data);
getField().set(this, convData);
return true;
}
/**
* convert a string type to a different type appropriate for the field in
* question.
* @param value
* @return
*/
public Object convertStringType(Object value) {
if (value == null) {
return null;
}
if (value instanceof String == false) {
return value;
}
String str = (String) value;
Type type = getField().getGenericType();
Class<?> cls = getField().getType();
String clsName = cls.getName();
switch (clsName) {
case "int":
case "Integer":
return Integer.valueOf(str);
case "double":
case "Double":
return Double.valueOf(str);
case "float":
case "Float":
return Float.valueOf(str);
case "short":
case "Short":
return Short.valueOf(str);
}
return value;
}
}

49
src/PamModel/parametermanager/swing/ManagedParameterDialog.java Normal file
View File

@ -0,0 +1,49 @@
package PamModel.parametermanager.swing;
import java.awt.Window;
import PamModel.parametermanager.ManagedParameters;
import PamView.dialog.PamDialog;
public class ManagedParameterDialog<T extends ManagedParameters> extends PamDialog {
private T params;
private ManagedParameterPanel<T> parameterPanel;
public ManagedParameterDialog(Window parentFrame, String title, T params) {
super(parentFrame, title, false);
parameterPanel = new ManagedParameterPanel<T>(params);
setDialogComponent(parameterPanel.getPanel());
}
public T showDialog(Window parentFrame, String title, T parameters) {
// ManagedParameterDialog dialog = new ManagedParameterDialog<>(parentFrame, title, parameters);
setParams(parameters);
setVisible(true);
return params;
}
private void setParams(T params) {
this.params = params;
this.parameterPanel.setParams(params);
}
@Override
public boolean getParams() {
return parameterPanel.getParams(params);
}
@Override
public void cancelButtonPressed() {
params = null;
}
@Override
public void restoreDefaultSettings() {
// TODO Auto-generated method stub
}
}

149
src/PamModel/parametermanager/swing/ManagedParameterPanel.java Normal file
View File

@ -0,0 +1,149 @@
package PamModel.parametermanager.swing;
import java.awt.Color;
import java.awt.GridBagConstraints;
import java.awt.GridBagLayout;
import java.util.Collection;
import javax.swing.BorderFactory;
import javax.swing.JComponent;
import javax.swing.JLabel;
import javax.swing.JPanel;
import javax.swing.JTextArea;
import javax.swing.JTextField;
import javax.swing.text.JTextComponent;
import PamModel.parametermanager.FieldNotFoundException;
import PamModel.parametermanager.ManagedParameters;
import PamModel.parametermanager.PamParameterData;
import PamModel.parametermanager.PamParameterSet;
import PamView.dialog.PamDialog;
import PamView.dialog.PamGridBagContraints;
public class ManagedParameterPanel<T extends ManagedParameters> {
private JPanel mainPanel;
private Collection<PamParameterData> parameterSet;
private static final int DEFAULT_TEXT_LENGTH = 6;
private static final int MAX_SINGLE_LINE_LENGTH = 40;
private JTextComponent[] textComponents;
public ManagedParameterPanel(T parameterExample) {
mainPanel = new JPanel(new GridBagLayout());
GridBagConstraints c = new PamGridBagContraints();
PamParameterSet exampleSet = parameterExample.getParameterSet();
parameterSet = exampleSet.getParameterCollection();
int n = parameterSet.size();
textComponents = new JTextComponent[n];
int i = 0;
for (PamParameterData paramData : parameterSet) {
textComponents[i] = createComponent(paramData);
c.gridx = 0;
c.fill = GridBagConstraints.NONE;
c.anchor = GridBagConstraints.NORTHEAST;
mainPanel.add(new JLabel(paramData.getShortName(), JLabel.RIGHT), c);
c.gridx++;
if (textComponents[i] instanceof JTextArea) {
c.fill = GridBagConstraints.HORIZONTAL;
}
else {
c.fill = GridBagConstraints.NONE;
}
c.anchor = GridBagConstraints.WEST;
mainPanel.add(textComponents[i], c);
textComponents[i].setToolTipText(getTipText(paramData));
c.gridy++;
i++;
}
}
private String getTipText(PamParameterData paramData) {
String tip = paramData.getToolTip();
if (tip != null) {
return tip;
}
else {
return paramData.getFieldName();
}
}
private JTextComponent createComponent(PamParameterData paramData) {
int textLen = paramData.getFieldLength();
if (textLen == 0) {
textLen = DEFAULT_TEXT_LENGTH;
}
if (textLen <= MAX_SINGLE_LINE_LENGTH) {
return new JTextField(textLen);
}
else {
JTextField dummyField = new JTextField(2);
// dummyField.getBorder().
JTextArea textArea = new JTextArea(textLen/MAX_SINGLE_LINE_LENGTH+1, MAX_SINGLE_LINE_LENGTH);
textArea.setBorder(BorderFactory.createLineBorder(Color.LIGHT_GRAY));
return textArea;
}
}
public JComponent getPanel() {
return mainPanel;
}
public void setParams(T params) {
int i = 0;
PamParameterData newParamData = null;
Object data = null;
for (PamParameterData paramData : this.parameterSet) {
// find the parameter in the new parameters (parameterSet is just a formatting placeholder)
try {
newParamData = params.getParameterSet().findParameterData(paramData.getFieldName());
} catch (FieldNotFoundException e) {
e.printStackTrace();
}
try {
data = newParamData.getData();
} catch (IllegalArgumentException e) {
e.printStackTrace();
} catch (IllegalAccessException e) {
e.printStackTrace();
}
if (data != null) {
textComponents[i].setText(data.toString());
}
else {
textComponents[i].setText(null);
}
i++;
}
}
public boolean getParams(T params) {
int i = 0;
PamParameterData newParamData = null;
Object data = null;
for (PamParameterData paramData : this.parameterSet) {
// find the parameter in the new parameters (parameterSet is just a formatting placeholder)
try {
newParamData = params.getParameterSet().findParameterData(paramData.getFieldName());
} catch (FieldNotFoundException e) {
e.printStackTrace();
}
String txt = textComponents[i].getText();
try {
newParamData.setData(txt);
} catch (IllegalArgumentException | IllegalAccessException e) {
String msg = "Invalid parameter. Data type should be " + paramData.getField().getType().getName();
return PamDialog.showWarning(null, newParamData.getShortName(), msg);
}
i++;
}
return true;
}
}

3
src/PamUtils/Coordinate3d.java
View File

@ -26,6 +26,7 @@ import java.io.Serializable;
import PamModel.parametermanager.ManagedParameters;
import PamModel.parametermanager.PamParameterSet;
import PamModel.parametermanager.PamParameterSet.ParameterSetType;
/**
* Class definition for a x,y coordinate number type.
@ -168,7 +169,7 @@ public class Coordinate3d implements Serializable , Cloneable, PamCoordinate, Ma
@Override
public PamParameterSet getParameterSet() {
PamParameterSet ps = PamParameterSet.autoGenerate(this);
PamParameterSet ps = PamParameterSet.autoGenerate(this, ParameterSetType.DETECTOR);
return ps;
}

3
src/PamUtils/LatLong.java
View File

@ -15,6 +15,7 @@ import java.text.NumberFormat;
import PamModel.parametermanager.ManagedParameters;
import PamModel.parametermanager.PamParameterSet;
import PamModel.parametermanager.PrivatePamParameterData;
import PamModel.parametermanager.PamParameterSet.ParameterSetType;
import PamguardMVC.PamConstants;
import net.sf.geographiclib.Geodesic;
import net.sf.geographiclib.PolygonArea;
@ -833,7 +834,7 @@ public class LatLong implements Serializable, Cloneable, Transferable, PamCoordi
*/
@Override
public PamParameterSet getParameterSet() {
PamParameterSet ps = PamParameterSet.autoGenerate(this);
PamParameterSet ps = PamParameterSet.autoGenerate(this, ParameterSetType.DETECTOR);
try {
Field field = this.getClass().getDeclaredField("height");
ps.put(new PrivatePamParameterData(this, field) {

57
src/PamUtils/PamCalendar.java
View File

@ -47,10 +47,7 @@ public class PamCalendar {
public static TimeZone defaultTimeZone = TimeZone.getTimeZone("UTC");
/*
* Not used: all now handled in PamCalendar.
*/
// private static TimeZone localTimeZone = defaultTimeZone;// TimeZone.getDefault();
private static TimeZone localTimeZone = defaultTimeZone;// TimeZone.getDefault();
public static final long millisPerDay = 1000L*24L*3600L;
@ -63,7 +60,7 @@ public class PamCalendar {
private static boolean soundFile;
/**
* time from the start of the file to the current moment.
* time from the start of the file to the currentmoment.
* This is updated every time data re read from the file, so is
* accurate to about 1/10 second.
* For accurate timing within detectors, always try to use sample number
@ -180,44 +177,8 @@ public class PamCalendar {
public static TimeZone getDisplayTimeZone(boolean useLocal) {
// return TimeZone.getTimeZone("UTC");
return useLocal ? CalendarControl.getInstance().getChosenTimeZone() : defaultTimeZone;
// return useLocal ? localTimeZone : defaultTimeZone;
}
/**
* Get the display time zone offset in milliseconds.
* @param useLocal
* @return
*/
public static long getDisplayTimeZoneOffest(boolean useLocal) {
TimeZone tz = getDisplayTimeZone(useLocal);
return tz.getOffset(getTimeInMillis());
}
/**
* Get a short string describing the time zone. This should be less than
* 10 characters. So if the full name of the TZ is long, then write it
* in the format "UTC+..."
* @param useLocal
* @return
*/
public static String getShortDisplayTimeZoneString(boolean useLocal) {
TimeZone tz = getDisplayTimeZone(useLocal);
String str = tz.getDisplayName();
str = CalendarControl.getInstance().getTZCode(true);
if (str.length() <= 10) {
return str;
}
// otherwise make up a string.
long offset = getDisplayTimeZoneOffest(useLocal) / 1000;
boolean isInt = offset % 3600 == 0;
if (isInt) {
str = String.format("UTC%+d", offset/3600);
}
else {
str = String.format("UTC%+3.1f", (double) offset/3600.);
}
return str;
// return useLocal ? CalendarControl.getInstance().getChosenTimeZone() : defaultTimeZone;
return useLocal ? localTimeZone : defaultTimeZone;
}
public static String formatDateTime(Date date) {
@ -430,13 +391,8 @@ public class PamCalendar {
public static String formatDBStyleTime(long timeInMillis, boolean showMillis, boolean useLocal) {
Calendar c = Calendar.getInstance();
TimeZone tz = getDisplayTimeZone(useLocal);
// if (tz != null) {
// long offs = tz.getOffset(timeInMillis);
// timeInMillis += tz.getOffset(timeInMillis);
// }
c.setTimeInMillis(timeInMillis);
c.setTimeZone(tz);
c.setTimeZone(getDisplayTimeZone(useLocal));
DateFormat df;
if (showMillis) {
df = new SimpleDateFormat("yyyy-MM-dd HH:mm:ss.SSS");
@ -444,7 +400,7 @@ public class PamCalendar {
else {
df = new SimpleDateFormat("yyyy-MM-dd HH:mm:ss");
}
df.setTimeZone(tz);
df.setTimeZone(getDisplayTimeZone(useLocal));
Date d = c.getTime();
// return String.format("%tY-%<tm-%<td %<tH:%<tM:%<tS", d);
@ -776,7 +732,6 @@ public class PamCalendar {
public static long msFromDateString(String dateString) {
return msFromDateString(dateString, false);
}
/**
* Read a date string and turn it into a millisecond time.
* @param dateString

3
src/PamUtils/time/GlobalTimeParameters.java
View File

@ -4,6 +4,7 @@ import java.io.Serializable;
import PamModel.parametermanager.ManagedParameters;
import PamModel.parametermanager.PamParameterSet;
import PamModel.parametermanager.PamParameterSet.ParameterSetType;
public class GlobalTimeParameters implements Serializable, Cloneable, ManagedParameters {
@ -91,7 +92,7 @@ public class GlobalTimeParameters implements Serializable, Cloneable, ManagedPar
@Override
public PamParameterSet getParameterSet() {
PamParameterSet ps = PamParameterSet.autoGenerate(this);
PamParameterSet ps = PamParameterSet.autoGenerate(this, ParameterSetType.DETECTOR);
return ps;
}

3
src/PamUtils/time/TimeDisplayParameters.java
View File

@ -5,6 +5,7 @@ import java.util.TimeZone;
import PamModel.parametermanager.ManagedParameters;
import PamModel.parametermanager.PamParameterSet;
import PamModel.parametermanager.PamParameterSet.ParameterSetType;
public class TimeDisplayParameters implements Serializable, Cloneable, ManagedParameters {
@ -34,7 +35,7 @@ public class TimeDisplayParameters implements Serializable, Cloneable, ManagedPa
@Override
public PamParameterSet getParameterSet() {
PamParameterSet ps = PamParameterSet.autoGenerate(this);
PamParameterSet ps = PamParameterSet.autoGenerate(this, ParameterSetType.DISPLAY);
return ps;
}

3
src/PamUtils/time/nmea/NMEATimeParameters.java
View File

@ -4,6 +4,7 @@ import java.io.Serializable;
import PamModel.parametermanager.ManagedParameters;
import PamModel.parametermanager.PamParameterSet;
import PamModel.parametermanager.PamParameterSet.ParameterSetType;
public class NMEATimeParameters implements Serializable, Cloneable, ManagedParameters {
@ -26,7 +27,7 @@ public class NMEATimeParameters implements Serializable, Cloneable, ManagedParam
@Override
public PamParameterSet getParameterSet() {
PamParameterSet ps = PamParameterSet.autoGenerate(this);
PamParameterSet ps = PamParameterSet.autoGenerate(this, ParameterSetType.DETECTOR);
return ps;
}

3
src/PamUtils/time/ntp/NTPTimeParameters.java
View File

@ -4,6 +4,7 @@ import java.io.Serializable;
import PamModel.parametermanager.ManagedParameters;
import PamModel.parametermanager.PamParameterSet;
import PamModel.parametermanager.PamParameterSet.ParameterSetType;
public class NTPTimeParameters implements Serializable, Cloneable, ManagedParameters {
@ -32,7 +33,7 @@ public class NTPTimeParameters implements Serializable, Cloneable, ManagedParame
@Override
public PamParameterSet getParameterSet() {
PamParameterSet ps = PamParameterSet.autoGenerate(this);
PamParameterSet ps = PamParameterSet.autoGenerate(this, ParameterSetType.DETECTOR);
return ps;
}

3
src/PamView/ColourArray.java
View File

@ -5,6 +5,7 @@ import java.io.Serializable;
import PamModel.parametermanager.ManagedParameters;
import PamModel.parametermanager.PamParameterSet;
import PamModel.parametermanager.PamParameterSet.ParameterSetType;
/**
* A series of functions for creating arrays of colours
@ -410,7 +411,7 @@ public class ColourArray implements Cloneable, Serializable, ManagedParameters {
@Override
public PamParameterSet getParameterSet() {
PamParameterSet ps = PamParameterSet.autoGenerate(this);
PamParameterSet ps = PamParameterSet.autoGenerate(this, ParameterSetType.DISPLAY);
return ps;
}

9
src/PamView/GeneralProjector.java
View File

@ -265,6 +265,11 @@ public abstract class GeneralProjector<T extends PamCoordinate> {
JComponent toolTipComponent;
/**
* Gets an adapter that can provide tooltips automatically based on plotted data units.
* @param component
* @return
*/
public MouseHoverAdapter getMouseHoverAdapter(JComponent component) {
ToolTipManager tt = ToolTipManager.sharedInstance();
tt.registerComponent(component);
@ -384,7 +389,9 @@ public abstract class GeneralProjector<T extends PamCoordinate> {
}
String hintText = dataBlock.getHoverText(this, hoveredDataUnit, hoverData.get(unitIndex).getAmbiguity());
if (hintText == null) return null;
if (hintText == null) {
return null;
}
// System.out.println(hintText);
return hintText;
}

3
src/PamView/GroupedSourceParameters.java
View File

@ -4,6 +4,7 @@ import java.io.Serializable;
import PamModel.parametermanager.ManagedParameters;
import PamModel.parametermanager.PamParameterSet;
import PamModel.parametermanager.PamParameterSet.ParameterSetType;
import PamUtils.PamUtils;
import PamView.dialog.GroupedSourcePanel;
@ -210,7 +211,7 @@ public class GroupedSourceParameters implements Serializable, Cloneable, Managed
*/
@Override
public PamParameterSet getParameterSet() {
PamParameterSet ps = PamParameterSet.autoGenerate(this);
PamParameterSet ps = PamParameterSet.autoGenerate(this, ParameterSetType.DETECTOR);
return ps;
}

5
src/PamView/GuiFrameSettings.java
View File

@ -7,6 +7,7 @@ import java.util.ArrayList;
import PamController.PamControlledUnit;
import PamModel.parametermanager.ManagedParameters;
import PamModel.parametermanager.PamParameterSet;
import PamModel.parametermanager.PamParameterSet.ParameterSetType;
import PamModel.parametermanager.PrivatePamParameterData;
/**
@ -55,7 +56,7 @@ public class GuiFrameSettings implements Serializable, Cloneable, ManagedParamet
@Override
public PamParameterSet getParameterSet() {
PamParameterSet ps = PamParameterSet.autoGenerate(this);
PamParameterSet ps = PamParameterSet.autoGenerate(this, ParameterSetType.DISPLAY);
try {
Field field = this.getClass().getDeclaredField("unitFrameInfo");
ps.put(new PrivatePamParameterData(this, field) {
@ -89,7 +90,7 @@ public class GuiFrameSettings implements Serializable, Cloneable, ManagedParamet
@Override
public PamParameterSet getParameterSet() {
PamParameterSet ps = PamParameterSet.autoGenerate(this);
PamParameterSet ps = PamParameterSet.autoGenerate(this, ParameterSetType.DISPLAY);
try {
Field field = this.getClass().getDeclaredField("guiFrame");
ps.put(new PrivatePamParameterData(this, field) {

33
src/PamView/PamGui.java
View File

@ -61,6 +61,7 @@ import javax.swing.JMenuBar;
import javax.swing.JMenuItem;
import javax.swing.JOptionPane;
import javax.swing.JPanel;
import javax.swing.JRootPane;
import javax.swing.SwingConstants;
import javax.swing.SwingUtilities;
import javax.swing.Timer;
@ -73,6 +74,7 @@ import javax.swing.event.MenuListener;
import Acquisition.DaqSystemInterface;
import annotation.tasks.AnnotationManager;
import metadata.MetaDataContol;
import performanceTests.PerformanceDialog;
import tipOfTheDay.TipOfTheDayManager;
import Array.ArrayManager;
@ -601,6 +603,7 @@ public class PamGui extends PamView implements WindowListener, PamSettings {
fileMenu.add(menuItem);
}
// if (SMRUEnable.isEnable()) {
menuItem = new JMenuItem("Import PAMGuard Modules");
menuItem.setToolTipText("Import module settings from a different PAMGuard configuration (psfx files only");
menuItem.addActionListener(new ActionListener() {
@ -610,6 +613,7 @@ public class PamGui extends PamView implements WindowListener, PamSettings {
}
});
fileMenu.add(menuItem);
// }
fileMenu.addSeparator();
@ -759,6 +763,7 @@ public class PamGui extends PamView implements WindowListener, PamSettings {
//for changing "hydrophones" to "microphone" and vice versa if medium changes.
menu.addMenuListener(new SettingsMenuListener());
menu.add(MetaDataContol.getMetaDataControl().createMenu(frame));
menu.addSeparator();
@ -1664,10 +1669,10 @@ public class PamGui extends PamView implements WindowListener, PamSettings {
protected void getGuiParameters() {
guiParameters.extendedState = frame.getExtendedState();
guiParameters.state = frame.getState();
if (guiParameters.state != Frame.MAXIMIZED_BOTH) {
// if (guiParameters.state != Frame.MAXIMIZED_BOTH) {
guiParameters.size = frame.getSize();
guiParameters.bounds = frame.getBounds();
}
// }
}
/**
@ -1983,5 +1988,29 @@ public class PamGui extends PamView implements WindowListener, PamSettings {
return this.mainTab;
}
/**
* find a parent window for a JComponent. This can be useful in
* finding windows to open child dialogs when the object holding
* the component may not have a direct reference back to it's dialog.
* @param component any Swing component
* @return parent Window (or frame) if it can be found
*/
public static Window findComponentWindow(JComponent component) {
if (component == null) {
return null;
}
JRootPane root = component.getRootPane();
if (root == null) {
return null;
}
Container rootP = root.getParent();
if (rootP instanceof Window) {
return (Window) rootP;
}
else {
return null;
}
}
}

3
src/PamView/PamSymbol.java
View File

@ -38,6 +38,7 @@ import javax.swing.JPanel;
import PamModel.parametermanager.ManagedParameters;
import PamModel.parametermanager.PamParameterSet;
import PamModel.parametermanager.PamParameterSet.ParameterSetType;
import PamView.PamColors.PamColor;
import PamView.symbol.SymbolData;
@ -808,7 +809,7 @@ public class PamSymbol extends PamSymbolBase implements Serializable, Icon, Clon
@Override
public PamParameterSet getParameterSet() {
PamParameterSet ps = PamParameterSet.autoGenerate(this);
PamParameterSet ps = PamParameterSet.autoGenerate(this, ParameterSetType.DISPLAY);
return ps;
}

1
src/PamView/dialog/warn/WarnOnce.java
View File

@ -48,6 +48,7 @@ public class WarnOnce implements PamSettings {
int ans = showWarning(parent, "Warning Messages", "Show all PAMGuard warning messages", WarnOnce.OK_CANCEL_OPTION);
if (ans == WarnOnce.CANCEL_OPTION) return;
singleInstance.warnOnceList.clearList();
singleInstance.showThisSess.clear();
}
@Override

3
src/PamView/paneloverlay/OverlayDataInfo.java
View File

@ -4,6 +4,7 @@ import java.io.Serializable;
import PamModel.parametermanager.ManagedParameters;
import PamModel.parametermanager.PamParameterSet;
import PamModel.parametermanager.PamParameterSet.ParameterSetType;
public class OverlayDataInfo implements Serializable, Cloneable, ManagedParameters {
@ -31,7 +32,7 @@ public class OverlayDataInfo implements Serializable, Cloneable, ManagedParamete
*/
@Override
public PamParameterSet getParameterSet() {
PamParameterSet ps = PamParameterSet.autoGenerate(this);
PamParameterSet ps = PamParameterSet.autoGenerate(this, ParameterSetType.DISPLAY);
return ps;
}

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