mirror of
https://github.com/PAMGuard/PAMGuard.git
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Douglas Gillespie
GitHub
commit
67e5841668
267
README.html
267
README.html
@ -466,9 +466,9 @@ name="_Version_2.02.10_January"></a>Version 2.02.10 January 2024</h1>
|
||||
<h2><span lang=EN-US>New Features</span></h2>
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||||
<p class=MsoNormal><b><span lang=EN-US>Importing modules</span></b><span
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||||
lang=EN-US> from other configurations: New options from file menu allowing import
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||||
of specific modules, or module settings from other configurations. E.g. if you
|
||||
had three similar configurations and had set one of them up with a new
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lang=EN-US> from other configurations: New options from file menu allowing
|
||||
import of specific modules, or module settings from other configurations. E.g.
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if you had three similar configurations and had set one of them up with a new
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detector, or got the click classifier settings set up just right in one of
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those configurations, you can import the additional modules or the click
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||||
detector settings easily into the other configurations. </span></p>
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@ -478,8 +478,9 @@ files) file performance</span></b><span lang=EN-US> when scrolling through
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audio data in Viewer mode. </span></p>
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<p class=MsoNormal><b><span lang=EN-US>Viewer Launch</span></b><span
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lang=EN-US> by right clicking on sqlite database and selecting <20>open with / Pamguard
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ViewerMode launcher<65> menu option.</span></p>
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lang=EN-US> by right clicking on sqlite database and selecting “open with /
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Pamguard ViewerMode” launcher menu option.</span></p>
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<h2><span lang=EN-US>Bug Fixes</span></h2>
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<p class=MsoNormal><b><span lang=EN-US>Logger Forms</span></b></p>
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@ -526,10 +527,18 @@ clicks not being correctly reassigned to different events. </span></p>
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<p class=MsoNormal><b><span lang=EN-US>Screen Position</span></b><span
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lang=EN-US>: When using multiple monitors, if you move a configuration to a
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||||
computer with a different monitor layout, the GUI should work out if its
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||||
computer with a different monitor layout, the GUI should work out if it’s
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opening on a screen area which no longer exists and move itself onto the
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primary monitor. </span></p>
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<p class=MsoNormal><b><span lang=EN-US>File Folder Processing</span></b><span
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lang=EN-US>: Previous version had a bug which caused files to not always be
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sorted into the correct order for processing. This caused some instability in
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some detectors, causing memory leaks when new data arrived with time stamps
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earlier than already processed data in memory. This is now fixed – files are ow
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correctly sorted alphabetically </span>by file name, i.e. not including the
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name of the folder containing the files.</p>
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<h1><span lang=EN-US>Version 2.02.09 June 2023</span></h1>
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<h2><span lang=EN-US>Bug Fixes</span></h2>
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@ -548,8 +557,8 @@ were reading local time, even when set to use UTC. </span></p>
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which mostly occurred when processing large datasets of many offline files, has
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been fixed.</span></p>
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<p class=MsoNormal><span lang=EN-US>Data Map: Scroll To Data pop-up menu,
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which didnt always scroll to the correct place, is now fixed. </span></p>
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<p class=MsoNormal><span lang=EN-US>Data Map: “Scroll To Data” pop-up menu,
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which didn’t always scroll to the correct place, is now fixed. </span></p>
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<p class=MsoNormal><span lang=EN-US>Bearing Localiser offline: If reprocessing
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bearings, the localizer was not correctly loading required raw or FFT data to
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@ -572,7 +581,7 @@ files and stores them within the PAMGuard configuration. This does not affect
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processing, but is important for record keeping. </span></p>
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<p class=MsoNormal><span lang=EN-US>GPS options to use any valid RMC or GGA
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string. Not all GPS receivers output their RMC data as GPRMC e.g. some may
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string. Not all GPS receivers output their RMC data as GPRMC – e.g. some may
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output as GNRMC. A new option allows the GPS module to use any string, whatever
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the first two characters of the string name may be. </span></p>
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@ -581,15 +590,15 @@ the first two characters of the string name may be. </span></p>
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<h2><span lang=EN-US>Bug Fixes</span></h2>
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<p class=MsoNormal><span lang=EN-US>Use of localization sensor and orientation
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data for static hydrophones had a bug whereby it would continually forget
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data for static hydrophones had a bug whereby it would continually ‘forget’
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angle offsets applied to static hydrophones in viewer mode. This is now fixed. </span></p>
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<p class=MsoNormal><span lang=EN-US>Click tool bar: Correctly shows event
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selection options even if no species classification options are in place. </span></p>
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<p class=MsoNormal><span lang=EN-US>Fixed Landmarks: Earlier versions were
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||||
losing these every time PAMGuard started or new data were loaded in viewer
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mode. Now fixed. </span></p>
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<p class=MsoNormal><span lang=EN-US>Fixed Landmarks: Earlier versions were ‘losing’
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these every time PAMGuard started or new data were loaded in viewer mode. Now
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fixed. </span></p>
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<p class=MsoNormal><span lang=EN-US>ROCCA: Fixed (another) memory leak which
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caused PAMGuard to crash when processing large data sets with the ROCCA
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@ -607,11 +616,11 @@ processing.</span></p>
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<p class=MsoNormal><span lang=EN-US>New sound type for simulated sounds which
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generates random chirps between around 200 and 800Hz, roughly the frequency
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youd expect sound from higher frequency baleen whales, such as humpbacks, to
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you’d expect sound from higher frequency baleen whales, such as humpbacks, to
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vocalise at. </span></p>
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<p class=MsoNormal><span lang=EN-US>Hiding tool tips. A menu item to
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permanently turn off all tool tips, or tap the Esc key to turn them off for 6
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permanently turn off all tool tips, or tap the ‘Esc’ key to turn them off for 6
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seconds if they are getting in the way, particularly when trying to interact
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with displays using the mouse. </span></p>
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@ -632,7 +641,7 @@ whistle classification module.</span></p>
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<h2><span lang=EN-US>New Features</span></h2>
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<p class=MsoNormal><span lang=EN-US>SoundTrap SUD file reading. If youre using
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<p class=MsoNormal><span lang=EN-US>SoundTrap SUD file reading. If you’re using
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SoundTrap autonomous recorders from Ocean Instruments, you no longer need to
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decompress the SoundTrap files prior to processing. This will save time and a
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lot of disk space. Extraction of clicks from the inbuilt SoundTrap Click
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@ -696,7 +705,7 @@ audio files. </span></p>
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<h2><span lang=EN-US>Bug Fixes</span></h2>
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<p class=MsoNormal><span lang=EN-US>Soundtrap DWV import. Will now generate
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binary files even if DWV file doesnÂt exist (which is correct behavior in
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binary files even if DWV file doesn‚’t exist (which is correct behavior in
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quiet conditions when no clicks were detected). </span></p>
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<p class=MsoNormal><span lang=EN-US>Spectrogram. Changes to stop occasional
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@ -731,8 +740,8 @@ running in real time. Added template names based on file names. </p>
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<p class=MsoNormal>#13 Merging files when offline processing file folders: Had
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||||
an error introduced in last release which caused it to fail to recognise gaps
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between files, meaning that some output data (i.e. after a gap) would have an
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incorrect time stamp. This did not affect data if the ÃÂmerge contiguous
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||||
filesÃÂ option was not selected. </p>
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incorrect time stamp. This did not affect data if the ‘merge contiguous files’
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option was not selected. </p>
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<p class=MsoNormal>#14 Logger forms data were not plotting correctly. This was
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due to the required data selection functions not being fully implemented. This
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@ -758,9 +767,8 @@ the TF FX display to crash if no data were displayed.</span></p>
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<p class=MsoNormal><span lang=EN-US>See major release notes for V 2.02.01
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below. </span></p>
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<p class=MsoNormal><span lang=EN-US>Bug 495: TD FX display throws
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NullPointerException if user has removed all data units and then moves mouse
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over display area.</span></p>
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<p class=MsoNormal><span lang=EN-US>Bug 495: TD FX display throws NullPointerException
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||||
if user has removed all data units and then moves mouse over display area.</span></p>
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||||
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<h1><a name="_Latest_Version_2.02.01"></a><span lang=EN-US>Version 2.02.01
|
||||
October 2021</span></h1>
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@ -783,11 +791,11 @@ font-family:"Times New Roman",serif'> </span></p>
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||||
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||||
<h2>File Format Change</h2>
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||||
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||||
<p class=MsoNormal>Changes have been made to the binary file format to support
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||||
the output of additional noise outputs for certain detectors (See below).
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||||
Binary files created with this version will not be compatible with earlier
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||||
versions 2.01.### and below. This version will read and may convert earlier
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||||
format binary files.</p>
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||||
<p class=MsoNormal>Changes have been made to the binary file format to support the
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||||
output of additional noise outputs for certain detectors (See below). Binary
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||||
files created with this version will not be compatible with earlier versions
|
||||
2.01.### and below. This version will read and may convert earlier format
|
||||
binary files.</p>
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||||
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||||
<p class=MsoNormal style='margin-bottom:0cm'><span style='font-size:12.0pt;
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font-family:"Times New Roman",serif'> </span></p>
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@ -795,19 +803,20 @@ font-family:"Times New Roman",serif'> </span></p>
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<p class=MsoNormal><b><span lang=EN-US>Localisation Modules</span></b><span
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lang=EN-US> </span></p>
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<p class=MsoNormal>Bearing and Group 3D localization modules have been thoroughly
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tested and a number of bugs rectified. Documentation has been developed and is
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||||
available in the online help. Further, a number of example configurations have
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been generated, configuration files for these are available in the PAMGuard
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downloads area <a href="http://www.pamguard.org/downloads.php?cat_id=3">here</a>.</p>
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||||
<p class=MsoNormal>Bearing and Group 3D localization modules have been
|
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thoroughly tested and a number of bugs rectified. Documentation has been
|
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developed and is available in the online help. Further, a number of example
|
||||
configurations have been generated, configuration files for these are available
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in the PAMGuard downloads area <a
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||||
href="http://www.pamguard.org/downloads.php?cat_id=3">here</a>.</p>
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<p class=MsoNormal><b><span lang=EN-US>Detection Group Localiser</span></b><span
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lang=EN-US> </span></p>
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<p class=MsoNormal>This module has been renamed ÃÂDetection GrouperÃÂ, so
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||||
as to avoid confusion with the Group 3D localizer. This is because the
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||||
Detection Grouper is more for organizing data into groups to be localized than
|
||||
it is for doing localization.</p>
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||||
<p class=MsoNormal>This module has been renamed “Detection Grouper”, so as to
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||||
avoid confusion with the Group 3D localizer. This is because the Detection
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Grouper is more for organizing data into groups to be localized than it is for
|
||||
doing localization.</p>
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||||
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||||
<p class=MsoNormal><b><span lang=EN-US>Minor Bug Fixes</span></b><span
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||||
lang=EN-US> </span></p>
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||||
@ -862,9 +871,9 @@ lang=EN-US> </span>Allow Clip Generator to create both a binary record and a
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||||
wav file </p>
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||||
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>5. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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Implemented a Backup Manager for backing up multiple types of data to multiple
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locations] </p>
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
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||||
lang=EN-US> </span>Implemented a Backup Manager for backing up multiple types
|
||||
of data to multiple locations] </p>
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||||
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||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>6. </span><span
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||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
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@ -905,8 +914,8 @@ lang=EN-US> </span>Extend the Hyperbolic Localiser to handle 2D planar arrays
|
||||
(previously limited to 3D volumetric arrays) </p>
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||||
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>14. </span><span
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||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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||||
new CPOD features </p>
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||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
|
||||
lang=EN-US> </span>new CPOD features </p>
|
||||
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||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>15. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
|
||||
@ -914,22 +923,23 @@ lang=EN-US> </span>Better interpolation of data by the Decimator when
|
||||
decimating/upsampling by a non-integer amount </p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>16. </span><span
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||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
|
||||
Noise Level Outputs - as an aid to performance diagnosis, some detectors
|
||||
(currently the GPL, Click Detector and Whistle and Moan Detector) are
|
||||
outputting additional noise metrics to their binary output files. These can be
|
||||
read with the <a href="https://sourceforge.net/projects/pamguard/files/Matlab/">PAMGuard
|
||||
Matlab library</a> and used to diagnose system performance in varying noise
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
|
||||
lang=EN-US> </span>Noise Level Outputs - as an aid to performance diagnosis,
|
||||
some detectors (currently the GPL, Click Detector and Whistle and Moan
|
||||
Detector) are outputting additional noise metrics to their binary output files.
|
||||
These can be read with the <a
|
||||
href="https://sourceforge.net/projects/pamguard/files/Matlab/">PAMGuard Matlab
|
||||
library</a> and used to diagnose system performance in varying noise
|
||||
conditions. Improved displays within PAMGuard for these noise metrics will be
|
||||
included in a future release. </p>
|
||||
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>17. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
|
||||
lang=EN-US> </span>An implementation of the Generalized Power Law Detector,
|
||||
developed by Tyler Helble ([Helble et al., ÃÂA generalized power-law
|
||||
detection algorithm for humpback whale vocalizationsÃÂ, The Journal of the
|
||||
Acoustical Society of America, vol. 131, no. 4, pp. 2682ÃÂ2699, 2012) is now
|
||||
available. For details, see the online help </p>
|
||||
developed by Tyler Helble ([Helble et al., ‘A generalized power-law detection
|
||||
algorithm for humpback whale vocalizations’, The Journal of the Acoustical
|
||||
Society of America, vol. 131, no. 4, pp. 2682–2699, 2012) is now available. For
|
||||
details, see the online help </p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>18. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
|
||||
@ -1057,11 +1067,11 @@ understand the notes listed for <a href="#_Latest_Beta_Version_2.00.10">Beta
|
||||
Version 2.00.10</a> before proceeding with installation and use of this
|
||||
version.</b></p>
|
||||
|
||||
<p class=MsoNormal>This version of PAMGuard has been bundled with Java 13 (release
|
||||
13.0.1). PSFX files generated in previous beta releases (2.xx.xx) should be
|
||||
compatible with this version, and vice-versa. PSF files generated in core
|
||||
releases (1.15.xx) can be loaded in this version, but will be converted to PSFX
|
||||
files when PAMGuard exits.</p>
|
||||
<p class=MsoNormal>This version of PAMGuard has been bundled with Java 13
|
||||
(release 13.0.1). PSFX files generated in previous beta releases (2.xx.xx)
|
||||
should be compatible with this version, and vice-versa. PSF files generated in
|
||||
core releases (1.15.xx) can be loaded in this version, but will be converted to
|
||||
PSFX files when PAMGuard exits.</p>
|
||||
|
||||
<p class=MsoNormal><b><span lang=EN-US>Bug Fixes</span></b></p>
|
||||
|
||||
@ -1289,8 +1299,8 @@ lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> &nb
|
||||
Bug 440. Measurement Computing Cards not enumerating properly.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>9. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
|
||||
Bug 441. Plot coordinate calculations incorrect in PamAxis.</p>
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
|
||||
lang=EN-US> </span>Bug 441. Plot coordinate calculations incorrect in PamAxis.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>10. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
|
||||
@ -1303,9 +1313,9 @@ lang=EN-US> </span>Bug 443. NI playback crashing immediately if a device is not
|
||||
present.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>12. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
|
||||
Bug 444. Bug in data selector which caused it to mess up history of recent psf
|
||||
files.</p>
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
|
||||
lang=EN-US> </span>Bug 444. Bug in data selector which caused it to mess up
|
||||
history of recent psf files.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>13. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
|
||||
@ -1445,8 +1455,8 @@ lang=EN-US> </span>Bug 431. Error when trying to mark section of spectrogram to
|
||||
send to Bearing Calculator module</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>6. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
|
||||
Bug 432. MySQL database interface - connection problems</p>
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
|
||||
lang=EN-US> </span>Bug 432. MySQL database interface - connection problems</p>
|
||||
|
||||
<p class=MsoNormal><b><span lang=EN-US>Upgrades</span></b></p>
|
||||
|
||||
@ -1696,8 +1706,8 @@ with installation and use of this version.</span></p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>1. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Bug 338. Problem displaying coastlines and bathymetric contours around
|
||||
the dateline (+/- 180 longitude) in the map.</p>
|
||||
</span>Bug 338. Problem displaying coastlines and bathymetric contours around the
|
||||
dateline (+/- 180 longitude) in the map.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -1823,9 +1833,9 @@ see new options in main menu.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
|
||||
lang=EN-US> </span>Added Matched Template Click Classifier. Classifies clicks based
|
||||
on an ideal template to match and a template to reject. An example of this is
|
||||
to classify beaked whale clicks in an environment with dolphin clicks.</p>
|
||||
lang=EN-US> </span>Added Matched Template Click Classifier. Classifies clicks
|
||||
based on an ideal template to match and a template to reject. An example of
|
||||
this is to classify beaked whale clicks in an environment with dolphin clicks.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>3. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
|
||||
@ -1935,9 +1945,9 @@ interface when importing Soundtrap data. Also changed the default date/time
|
||||
format to ISO8601 standard.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
|
||||
A number of upgrades and fixes to the Localiser algorithms, including expanding
|
||||
to work with whistles.</p>
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
|
||||
lang=EN-US> </span>A number of upgrades and fixes to the Localiser algorithms,
|
||||
including expanding to work with whistles.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>3. </span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
|
||||
@ -2097,8 +2107,8 @@ lang=EN-US> </span>User is now able to specify Soundtrap date/time format</p>
|
||||
<h1><a name="_Latest_Beta_Version_2.00.11"></a><span lang=EN-US>Beta Version
|
||||
2.00.11 October 2017</span></h1>
|
||||
|
||||
<p class=MsoNormal><span lang=EN-US>PAMGuard Version 2 contains major updates. You
|
||||
should read and understand the notes listed for <a
|
||||
<p class=MsoNormal><span lang=EN-US>PAMGuard Version 2 contains major updates.
|
||||
You should read and understand the notes listed for <a
|
||||
href="#_Latest_Beta_Version_2.00.10">Beta Version 2.00.10</a> before proceeding
|
||||
with installation and use of this version.</span></p>
|
||||
|
||||
@ -2201,22 +2211,22 @@ file format is the addition of a Unique Data Identifier (UID) to each unit of
|
||||
data. This is intended to aid in offline analysis by making it easier for the
|
||||
user to link what they are seeing on different PAMGuard displays and also to
|
||||
link with any data post processed in Matlab or other custom analysis software.
|
||||
UIDÃÂs are also added to PAMGuard database tables. </span></p>
|
||||
UID’s are also added to PAMGuard database tables. </span></p>
|
||||
|
||||
<h4><span lang=EN-US>Converting Old Data</span></h4>
|
||||
|
||||
<p class=MsoNormal><span lang=EN-US>If old data are opened with the PAMGuard
|
||||
viewer they will automatically be converted. For safety, the original binary
|
||||
files will not be overwritten and the new data will be placed in a new folder
|
||||
on your computer with the same path as the old data, but suffixed with
|
||||
ÃÂ_WithUIDÃÂ, e.g. if your binary data were previously stored in the folder
|
||||
on your computer with the same path as the old data, but suffixed with ‘_WithUID’,
|
||||
e.g. if your binary data were previously stored in the folder
|
||||
C:\MySurvey\binarydata the new data will be written to
|
||||
C:\MySurvey\binarydata_WithUID. </span></p>
|
||||
|
||||
<p class=MsoNormal><span lang=EN-US>The additional UID column will be added to
|
||||
all database tables and populated with unique values. For data which are stored
|
||||
in both the binary files and in database tables, the same UIDÃÂs will be used
|
||||
in both data stores. </span></p>
|
||||
in both the binary files and in database tables, the same UID’s will be used in
|
||||
both data stores. </span></p>
|
||||
|
||||
<h3><span lang=EN-US>New Displays</span></h3>
|
||||
|
||||
@ -2285,8 +2295,8 @@ Hawaii/Temperate Pacific/North Atlantic datasets. This has been corrected.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2.</span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Bug 320. Pamguard stopped reading Click Detector Event data from
|
||||
database when target motion analysis information was encountered. Corrected.</p>
|
||||
</span>Bug 320. Pamguard stopped reading Click Detector Event data from database
|
||||
when target motion analysis information was encountered. Corrected.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>3.</span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -2357,9 +2367,10 @@ happens when the user selects save as new configuration. This has been fixed.</p
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>6.</span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Bug 315. code searched for file in working folder, which is the installation
|
||||
folder when starting PAMGuard using a shortcut link. But when double-clicking
|
||||
on a psf, the working folder is the location of the psf. This has been fixed.</p>
|
||||
</span>Bug 315. code searched for file in working folder, which is the
|
||||
installation folder when starting PAMGuard using a shortcut link. But when
|
||||
double-clicking on a psf, the working folder is the location of the psf. This
|
||||
has been fixed.</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>7.</span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
|
||||
@ -2419,9 +2430,9 @@ dependencies)</span></p>
|
||||
|
||||
<p class=MsoNormal><b><span lang=EN-US>Other Changes</span></b></p>
|
||||
|
||||
<p class=MsoNormal><span lang=EN-US>The installer has been updated to handle both
|
||||
64 bit and 32 bit installations. PAMGuard psf files are now registered in the
|
||||
Windows Registry, so double-clicking on a psf file should run PAMGuard in
|
||||
<p class=MsoNormal><span lang=EN-US>The installer has been updated to handle
|
||||
both 64 bit and 32 bit installations. PAMGuard psf files are now registered in
|
||||
the Windows Registry, so double-clicking on a psf file should run PAMGuard in
|
||||
normal mode (as opposed to Viewer or Mixed modes). Note that the Windows
|
||||
Registry can only hold a single executable reference for psf files; therefore,
|
||||
for users with multiple installations of PAMGuard, double-clicking on a psf
|
||||
@ -2449,12 +2460,12 @@ November 2016</span></h1>
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>1.
|
||||
Bug 303. Some ASIO sound cards not working with either ASIO system in PAMGuard.
|
||||
For the PAMGuard ASIO system, this was due to a data format used by some sound
|
||||
cards never being properly implemented. For the ÃÂNew ASIO systemÃÂ which
|
||||
is based on jAsioHost, the unpacking of that format contained a bug which
|
||||
returned incorrect numbers, so data were swamped with noise. Both systems are
|
||||
now fixed. By preference, users should use the PAMGuard ASIO system since the
|
||||
JAsioHost based system seems to drop samples when many channels are running at
|
||||
high sample rate. </span></p>
|
||||
cards never being properly implemented. For the “New ASIO system” which is
|
||||
based on jAsioHost, the unpacking of that format contained a bug which returned
|
||||
incorrect numbers, so data were swamped with noise. Both systems are now fixed.
|
||||
By preference, users should use the PAMGuard ASIO system since the JAsioHost
|
||||
based system seems to drop samples when many channels are running at high
|
||||
sample rate. </span></p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'>2.<span style='font-size-adjust: none;
|
||||
font-stretch: normal'><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -2741,8 +2752,8 @@ being imported into the new database. Problem 2 was that indexing of imported
|
||||
click events in the new database was incorrect. Both these issues have now been
|
||||
fixed. </span></p>
|
||||
|
||||
<h1><a name="_Latest_Version_1.15.02"></a><span lang=EN-US>Version 1.15.02
|
||||
March 2016</span></h1>
|
||||
<h1><a name="_Latest_Version_1.15.02"></a><span lang=EN-US>Version 1.15.02 March
|
||||
2016</span></h1>
|
||||
|
||||
<p class=MsoNormal>A number of small bug fixes following release of 1.15.00.</p>
|
||||
|
||||
@ -2894,13 +2905,13 @@ for details. </span></p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>3.</span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span><span lang=EN-US>GPS Loading into PAMGuard Viewer. This has been
|
||||
modified so that the rules governing GPS data collection and storage also apply
|
||||
when loading data from the database. For instance, if you've stored all GPS
|
||||
data, you've probably got a record every second in the database which can
|
||||
create memory overflows if you try to load a lot of data in the viewer. You can
|
||||
now tell PAMGuard to only load a data point every n seconds which will reduce
|
||||
the number of points loaded. Useful when making large scale overview maps of a
|
||||
</span><span lang=EN-US>GPS Loading into PAMGuard Viewer. This has been modified
|
||||
so that the rules governing GPS data collection and storage also apply when
|
||||
loading data from the database. For instance, if you've stored all GPS data,
|
||||
you've probably got a record every second in the database which can create
|
||||
memory overflows if you try to load a lot of data in the viewer. You can now
|
||||
tell PAMGuard to only load a data point every n seconds which will reduce the
|
||||
number of points loaded. Useful when making large scale overview maps of a
|
||||
survey. </span></p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>4.</span><span
|
||||
@ -3199,9 +3210,8 @@ to read on a time. Fixed</p>
|
||||
|
||||
<p class=MsoNormal><i>Menu Layout</i></p>
|
||||
|
||||
<p class=MsoNormal>The PAMGuard menus have been rearranged into a more
|
||||
intuitive grouping which we believe will help users find functionality more
|
||||
easily. </p>
|
||||
<p class=MsoNormal>The PAMGuard menus have been rearranged into a more intuitive
|
||||
grouping which we believe will help users find functionality more easily. </p>
|
||||
|
||||
<p class=MsoNormal>'Detection' menu has been renamed to 'Settings' since many
|
||||
menu items within this menu were not directly to do with 'Detection'.</p>
|
||||
@ -3292,9 +3302,9 @@ of third octave noise bands. See online help for details. </p>
|
||||
|
||||
<p class=MsoNormal><i>Filtered Noise Measurement</i> (Sound Processing Group)</p>
|
||||
|
||||
<p class=MsoNormal>This module, developed by Douglas Gillespie, measures noise
|
||||
levels in a single frequency band using a variety of filter functions. See
|
||||
online help for details. </p>
|
||||
<p class=MsoNormal>This module, developed by Douglas Gillespie, measures noise levels
|
||||
in a single frequency band using a variety of filter functions. See online help
|
||||
for details. </p>
|
||||
|
||||
<p class=MsoNormal><i>Envelope Tracing</i> (Beta Only, Sound Processing Group)</p>
|
||||
|
||||
@ -3330,11 +3340,10 @@ different. Details are available in the online help. </p>
|
||||
<p class=MsoNormal><i>FLAC File Support</i></p>
|
||||
|
||||
<p class=MsoNormal>Can now read raw audio data direct from FLAC files. <a
|
||||
href="http://en.wikipedia.org/wiki/FLAC">FLAC</a> is a lossless compression
|
||||
algorithm for audio data. Files, or folders of files are accessed in the same
|
||||
way as WAV and AIFF files in the Sound Acquisition module. In a future release
|
||||
we also hope to provide support for writing FLAC files from the sound recorder
|
||||
module. </p>
|
||||
href="http://en.wikipedia.org/wiki/FLAC">FLAC</a> is a lossless compression algorithm
|
||||
for audio data. Files, or folders of files are accessed in the same way as WAV
|
||||
and AIFF files in the Sound Acquisition module. In a future release we also
|
||||
hope to provide support for writing FLAC files from the sound recorder module. </p>
|
||||
|
||||
<p class=MsoNormal><i>Sound Recorder Module</i></p>
|
||||
|
||||
@ -3402,8 +3411,8 @@ whistle.</p>
|
||||
<li class=MsoNormal style='margin-bottom:0cm'>Airgun display. If this was
|
||||
included in the PAMGuard model before the GPS module it would hang
|
||||
PAMGuard. This has been rectified. </li>
|
||||
<li class=MsoNormal style='margin-bottom:0cm'>Fixed occasional exceptions in the
|
||||
sound output modules when playing back from files. </li>
|
||||
<li class=MsoNormal style='margin-bottom:0cm'>Fixed occasional exceptions in
|
||||
the sound output modules when playing back from files. </li>
|
||||
<li class=MsoNormal style='margin-bottom:0cm'>Fixed exceptions in spectrogram
|
||||
user interface. </li>
|
||||
<li class=MsoNormal style='margin-bottom:0cm'>Fixed National Instruments sound
|
||||
@ -3485,8 +3494,8 @@ other data sources for the PAMGuard viewer. </p>
|
||||
storage to the database offline for any module having both binary and database
|
||||
storage. </p>
|
||||
|
||||
<p class=MsoNormal style='margin-left:36.0pt'>Can create a blank MS Access database
|
||||
(2007 and later *.accdb formats only).</p>
|
||||
<p class=MsoNormal style='margin-left:36.0pt'>Can create a blank MS Access
|
||||
database (2007 and later *.accdb formats only).</p>
|
||||
|
||||
<p class=MsoNormal style='margin-left:36.0pt'>Can open MS Access from within
|
||||
PAMGuard to make it easier to view database content. </p>
|
||||
@ -3805,10 +3814,10 @@ source, even if that data source is loaded after the FFT module is created.</p>
|
||||
|
||||
<p class=MsoNormal>1. Binary storage module. </p>
|
||||
|
||||
<p class=MsoNormal>Performs a parallel role to the PAMGAURD database but uses binary
|
||||
files in a proprietary format which is considerably more efficient for data of
|
||||
unknown length such as whistle contours or small clips of click waveform. This
|
||||
feature is currently implemented in the following modules:</p>
|
||||
<p class=MsoNormal>Performs a parallel role to the PAMGAURD database but uses
|
||||
binary files in a proprietary format which is considerably more efficient for
|
||||
data of unknown length such as whistle contours or small clips of click
|
||||
waveform. This feature is currently implemented in the following modules:</p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -4017,8 +4026,8 @@ column was setting to zero. This is now fixed</p>
|
||||
|
||||
<p class=MsoNormal>Ishmael Detectors</p>
|
||||
|
||||
<p class=MsoNormal>Better rendering of detection boxes on spectrogram display and
|
||||
more meaningful names in spectrogram display menu.</p>
|
||||
<p class=MsoNormal>Better rendering of detection boxes on spectrogram display
|
||||
and more meaningful names in spectrogram display menu.</p>
|
||||
|
||||
<p class=MsoNormal>Sound acquisition</p>
|
||||
|
||||
@ -4107,8 +4116,8 @@ Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>This results in a major speed up of data exchange between modules and
|
||||
can lead to a x4 improvement in overall performance. </p>
|
||||
</span>This results in a major speed up of data exchange between modules and can
|
||||
lead to a x4 improvement in overall performance. </p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -4221,9 +4230,9 @@ Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Channel lists in output data streams of Decimator and other modules
|
||||
fixed, so that when channel numbers change, downstream modules configurations
|
||||
get the correct list of available channels. </p>
|
||||
</span>Channel lists in output data streams of Decimator and other modules fixed,
|
||||
so that when channel numbers change, downstream modules configurations get the
|
||||
correct list of available channels. </p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -4846,8 +4855,8 @@ Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif
|
||||
<p class=MsoNormal> </p>
|
||||
|
||||
<p class=MsoNormal><a name="_Toc312065304"></a><a name="_Toc312063949"></a><span
|
||||
class=Heading2Char><span style='font-size:13.0pt'>1.0Beta 22 Jan 2008 -
|
||||
Pamguard starts two releases, core and beta release</span></span>, </p>
|
||||
class=Heading2Char><span style='font-size:13.0pt'>1.0Beta 22 Jan 2008 - Pamguard
|
||||
starts two releases, core and beta release</span></span>, </p>
|
||||
|
||||
<p class=MsoNormal>this is the beta release</p>
|
||||
|
||||
|
||||
@ -4,7 +4,7 @@
|
||||
<groupId>org.pamguard</groupId>
|
||||
<artifactId>Pamguard</artifactId>
|
||||
<name>Pamguard Java12+</name>
|
||||
<version>2.02.09aa</version>
|
||||
<version>2.02.10</version>
|
||||
<description>Pamguard for Java 12+, using Maven to control dependcies</description>
|
||||
<url>www.pamguard.org</url>
|
||||
<organization>
|
||||
@ -100,16 +100,6 @@
|
||||
</transformer>
|
||||
<transformer />
|
||||
</transformers>
|
||||
<filters>
|
||||
<filter>
|
||||
<artifact>*:*</artifact>
|
||||
<excludes>
|
||||
<exclude>META-INF/*.SF</exclude>
|
||||
<exclude>META-INF/*.DSA</exclude>
|
||||
<exclude>META-INF/*.RSA</exclude>
|
||||
</excludes>
|
||||
</filter>
|
||||
</filters>
|
||||
</configuration>
|
||||
</execution>
|
||||
</executions>
|
||||
@ -117,6 +107,16 @@
|
||||
<transformers>
|
||||
<transformer />
|
||||
</transformers>
|
||||
<filters>
|
||||
<filter>
|
||||
<artifact>*:*</artifact>
|
||||
<excludes>
|
||||
<exclude>META-INF/*.SF</exclude>
|
||||
<exclude>META-INF/*.DSA</exclude>
|
||||
<exclude>META-INF/*.RSA</exclude>
|
||||
</excludes>
|
||||
</filter>
|
||||
</filters>
|
||||
</configuration>
|
||||
</plugin>
|
||||
<plugin>
|
||||
|
||||
2
pom.xml
2
pom.xml
@ -5,7 +5,7 @@
|
||||
<modelVersion>4.0.0</modelVersion>
|
||||
<groupId>org.pamguard</groupId>
|
||||
<artifactId>Pamguard</artifactId>
|
||||
<version>2.02.09ab</version>
|
||||
<version>2.02.10</version>
|
||||
<name>Pamguard Java12+</name>
|
||||
<description>Pamguard for Java 12+, using Maven to control dependcies</description>
|
||||
<url>www.pamguard.org</url>
|
||||
|
||||
@ -14,6 +14,7 @@ import javax.sound.sampled.UnsupportedAudioFileException;
|
||||
import org.codehaus.plexus.util.FileUtils;
|
||||
import Acquisition.offlineFuncs.AquisitionLoadPoint;
|
||||
import PamDetection.RawDataUnit;
|
||||
import PamguardMVC.PamConstants;
|
||||
//import PamUtils.CPUMonitor;
|
||||
import PamguardMVC.PamDataBlock;
|
||||
import PamguardMVC.dataOffline.OfflineDataLoadInfo;
|
||||
@ -47,6 +48,8 @@ public class WavAudioFile implements PamAudioFileLoader {
|
||||
* Get the file extensions associated with loading these data.
|
||||
*/
|
||||
protected ArrayList<String> fileExtensions;
|
||||
|
||||
private double[] channelBackground = new double[PamConstants.MAX_CHANNELS];
|
||||
|
||||
public WavAudioFile() {
|
||||
fileExtensions = new ArrayList<String>(Arrays.asList(new String[]{".wav", ".aif", ".aiff"}));
|
||||
@ -190,6 +193,9 @@ public class WavAudioFile implements PamAudioFileLoader {
|
||||
|
||||
newDataUnit = new RawDataUnit(ms, 1 << ichan, totalSamples, newSamples);
|
||||
newDataUnit.setFileSamples(totalSamples + skipped / frameSize); //set the number samples into the wav file.
|
||||
|
||||
removeDCComponent(doubleData[ichan], ichan, audioFormat);
|
||||
|
||||
newDataUnit.setRawData(doubleData[ichan], true);
|
||||
|
||||
//System.out.println("New wav data: " + PamCalendar.formatDateTime(newDataUnit.getTimeMilliseconds()));
|
||||
@ -211,6 +217,26 @@ public class WavAudioFile implements PamAudioFileLoader {
|
||||
}
|
||||
|
||||
|
||||
private void removeDCComponent(double[] ds, int channel, AudioFormat audioFormat) {
|
||||
/*
|
||||
* do a simple background subtraction with about a 1s time constant.
|
||||
* If the background is currently zero initialise it to the mean data value.
|
||||
*/
|
||||
double alpha = 1./audioFormat.getSampleRate();
|
||||
double alpha_1 = 1.-alpha;
|
||||
double bg = channelBackground[channel];
|
||||
if (bg == 0.) {
|
||||
for (int i = 0; i < ds.length; i++) {
|
||||
bg += ds[i];
|
||||
}
|
||||
bg /= ds.length;
|
||||
}
|
||||
for (int i = 0; i < ds.length; i++) {
|
||||
ds[i] -= bg;
|
||||
bg = bg*alpha_1 + ds[i]*alpha;
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* Open a sound file.
|
||||
* @param soundFile
|
||||
|
||||
@ -31,12 +31,12 @@ public class PamguardVersionInfo {
|
||||
* Version number, major version.minorversion.sub-release.
|
||||
* Note: can't go higher than sub-release 'f'
|
||||
*/
|
||||
static public final String version = "2.02.09ab";
|
||||
static public final String version = "2.02.10";
|
||||
|
||||
/**
|
||||
* Release date
|
||||
*/
|
||||
static public final String date = "18 January 2024";
|
||||
static public final String date = "30 January 2024";
|
||||
|
||||
// /**
|
||||
// * Release type - Beta or Core
|
||||
|
||||
@ -228,6 +228,7 @@ public abstract class FileListWorker<T extends File> implements PamWorkWrapper<F
|
||||
@Override
|
||||
public final void taskFinished(FileListData<T> result) {
|
||||
oldFileList = result;
|
||||
sortFiles(result);
|
||||
fileListUser.newFileList(result);
|
||||
}
|
||||
|
||||
|
||||
Loading…
Reference in New Issue
Block a user