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Merge fixes to click train detector

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This commit is contained in:
Jamie Mac 2022-04-20 11:21:25 +01:00
parent d9d4b0fee8
commit 628b965a8b
3 changed files with 37 additions and 18 deletions
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51
src/clickTrainDetector/classification/standardClassifier/StandardClassifier.java
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@ -7,11 +7,9 @@ import clickTrainDetector.ClickTrainControl;
import clickTrainDetector.classification.CTClassification;
import clickTrainDetector.classification.CTClassifier;
import clickTrainDetector.classification.CTClassifierParams;
import clickTrainDetector.classification.CTClassifierType;
import clickTrainDetector.classification.bearingClassifier.BearingClassifier;
import clickTrainDetector.classification.bearingClassifier.BearingClassifierParams;
import clickTrainDetector.classification.idiClassifier.IDIClassification;
import clickTrainDetector.classification.idiClassifier.IDIClassifier;
import clickTrainDetector.classification.simplechi2classifier.Chi2CTClassification;
import clickTrainDetector.classification.simplechi2classifier.Chi2ThresholdClassifier;
import clickTrainDetector.classification.templateClassifier.CTTemplateClassifier;
import clickTrainDetector.layout.classification.CTClassifierGraphics;
@ -19,14 +17,13 @@ import clickTrainDetector.layout.classification.standardClassifier.StandardClass
/**
* Combines the IDI, CHI2, BEARING and TEMPLATE classifier into one.
* @author Jamie Macaulay
*
*/
public class StandardClassifier implements CTClassifier {
/**
* It's quite complicated to keep track of the species ID for all sub classifier but just set them
* It's quite complicated to keep track of the species ID for all sub classifier but just set them
* to 1 to check whether the classifier has passed or not,
*/
public int SUB_CLASSIFIER_SPECIESID = 1;
@ -50,6 +47,13 @@ public class StandardClassifier implements CTClassifier {
* Click train control.
*/
private ClickTrainControl clickTrainControl;
/**
* The classifier types used in the standard classifier.
* ****New types MUST BE ADDED HERE****
*/
public static CTClassifierType[] CLASSIFIER_TYPES = {CTClassifierType.CHI2THRESHOLD, CTClassifierType.IDICLASSIFIER, CTClassifierType.TEMPLATECLASSIFIER, CTClassifierType.BEARINGCLASSIFIER};
public StandardClassifier(ClickTrainControl clickTrainControl, int speciesID) {
this.clickTrainControl = clickTrainControl;
@ -57,7 +61,7 @@ public class StandardClassifier implements CTClassifier {
standardClssfrParams.speciesFlag=speciesID;
//load the settings
createClassifiers();
createClassifiers();
}
/**
@ -65,19 +69,32 @@ public class StandardClassifier implements CTClassifier {
*/
private void createClassifiers() {
classifiers = new ArrayList<CTClassifier>();
classifiers.add(new Chi2ThresholdClassifier(clickTrainControl, SUB_CLASSIFIER_SPECIESID));
classifiers.add(new IDIClassifier(clickTrainControl,SUB_CLASSIFIER_SPECIESID));
classifiers.add(new CTTemplateClassifier(clickTrainControl, SUB_CLASSIFIER_SPECIESID));
classifiers.add(new BearingClassifier(clickTrainControl, SUB_CLASSIFIER_SPECIESID));
//do this so that is CLASSIFIER_TYPES changes order things still work.
for (int i=0; i<CLASSIFIER_TYPES.length; i++) {
switch (CLASSIFIER_TYPES[i]) {
default:
break;
case CHI2THRESHOLD:
classifiers.add(new Chi2ThresholdClassifier(clickTrainControl, SUB_CLASSIFIER_SPECIESID));
break;
case IDICLASSIFIER:
classifiers.add(new IDIClassifier(clickTrainControl,SUB_CLASSIFIER_SPECIESID));
break;
case TEMPLATECLASSIFIER:
classifiers.add(new CTTemplateClassifier(clickTrainControl, SUB_CLASSIFIER_SPECIESID));
break;
case BEARINGCLASSIFIER:
classifiers.add(new BearingClassifier(clickTrainControl, SUB_CLASSIFIER_SPECIESID));
break;
}
}
setClassifierParams();
}
/**
* Set the parameters for the individual classifiers
*/
@ -107,7 +124,7 @@ public class StandardClassifier implements CTClassifier {
@Override
public CTClassification classifyClickTrain(CTDataUnit clickTrain) {
int speciesID = standardClssfrParams.speciesFlag;
int speciesID = standardClssfrParams.speciesFlag;
System.out.println("Standard Classificiation: " );
@ -168,4 +185,4 @@ public class StandardClassifier implements CTClassifier {
return classifiers;
}
}
}

2
src/clickTrainDetector/classification/templateClassifier/SpectrumTemplateDataUnit.java
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@ -16,7 +16,7 @@ public class SpectrumTemplateDataUnit extends PamDataUnit {
public SpectrumTemplateDataUnit(MatchTemplate spectrumTemplate) {
super(0L);
this.spectrumTemplate=spectrumTemplate;
this.setSampleDuration(1000L); //needed for some plots sometimes...
}
}

2
src/detectionPlotFX/plots/SpectrumPlot.java
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@ -128,6 +128,8 @@ public abstract class SpectrumPlot <D extends PamDataUnit> implements Detection
@Override
public void setupAxis(D data, double sR, DetectionPlotProjector plotProjector) {
if (data ==null) return;
this.sR=sR;