mirror of
https://github.com/PAMGuard/PAMGuard.git
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Fix a couple of null pointers
And pre release 2.02.10bc
This commit is contained in:
Douglas Gillespie
parent
3e2de8f5dc
commit
52238be194
183
README.html
183
README.html
@ -387,8 +387,11 @@ PamguardBeta_ViewerMode.exe):</p>
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<h1><a name="_LATEST_VERSION_2.02.03"></a><a name="_VERSION_2.02.07_January"></a><a
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name="_Latest_Version_2.02.10"></a><em><span style='font-size:12.0pt;
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font-family:"Cambria",serif;font-style:normal'><a
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href="#_Version_2.02.10_January">Latest Version 2.02.10 January 2024</a></span></em></h1>
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font-family:"Cambria",serif;font-style:normal'><a href="#_Version_2.02.11_April">Latest
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Version 2.02.11 April 2024</a></span></em></h1>
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<h1><em><span style='font-size:12.0pt;font-family:"Cambria",serif;font-style:
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normal'><a href="#_Version_2.02.10_January">Version 2.02.10 January 2024</a></span></em></h1>
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<h1><em><span style='font-size:12.0pt;font-family:"Cambria",serif;font-style:
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normal'><a href="#_Version_2.02.09_June">Version 2.02.09 June 2023</a></span></em></h1>
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@ -461,14 +464,47 @@ Version 2.00.10 June 2017</a></span></h1>
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<h1><a name="_Latest_Version_2.02.03_1"></a><a name="_Latest_Version_2.02.05"></a><a
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name="_Latest_Version_2.02.06"></a><a name="_Latest_Version_2.02.07"></a><a
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name="_Latest_Version_2.02.08"></a><a name="_Version_2.02.09_June"></a><a
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name="_Version_2.02.10_January"></a>Version 2.02.10 January 2024</h1>
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name="_Version_2.02.10_January"></a><a name="_Version_2.02.11_April"></a>Version
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2.02.11 April 2024</h1>
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<p class=MsoNormal> </p>
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<h2>New Features</h2>
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<p class=MsoNormal>Click detector: Remembers locations of displays and doesn’t
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continually reset them. </p>
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<p class=MsoNormal>Help for Matched Click Classifier</p>
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<h2>Bug Fixes</h2>
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<p class=MsoNormal>Linking clicks to offline clicks table. We had a database
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that had become corrupted so added code to relink offline clicks to their corresponding
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clicks from binary data. </p>
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<p class=MsoNormal>Drawing non-acoustic data: Data that were not associated
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with any hydrophones, e.g. visual sightings in Logger forms were not drawing on
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the map. This fixed and PAMGuard will use the vessels GPS position as
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reference. </p>
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<p class=MsoNormal>Lookup tables: fix feature which was causing table entries
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to repeat. </p>
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<p class=MsoNormal>Click Train Detector: Add exception handlers to avoid errors
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as PAMGuard stops / restarts. </p>
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<p class=MsoNormal>Group Detection starts and ends: Check data integrity
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function fixed and now inserts correct times of start and ends of events into
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database. </p>
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<h1>Version 2.02.10 January 2024</h1>
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<h2><span lang=EN-US>New Features</span></h2>
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<p class=MsoNormal><b><span lang=EN-US>Importing modules</span></b><span
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lang=EN-US> from other configurations: New options from file menu allowing
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import of specific modules, or module settings from other configurations. E.g.
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if you had three similar configurations and had set one of them up with a new
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lang=EN-US> from other configurations: New options from file menu allowing import
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of specific modules, or module settings from other configurations. E.g. if you
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had three similar configurations and had set one of them up with a new
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detector, or got the click classifier settings set up just right in one of
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those configurations, you can import the additional modules or the click
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detector settings easily into the other configurations. </span></p>
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@ -496,9 +532,9 @@ correctly saving updated bearings to the database. Now fixed. </span></p>
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<p class=MsoNormal><b><span lang=EN-US>ROCCA Classifier fixes</span></b></p>
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<p class=MsoNormal><span lang=EN-US>Allow Rocca to run without classifiers:
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Fixed bug that threw an error if no classifier files were specified in
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Rocca Params dialog</span></p>
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<p class=MsoNormal><span lang=EN-US>Allow Rocca to run without classifiers: Fixed
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bug that threw an error if no classifier files were specified in Rocca
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Params dialog</span></p>
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<p class=MsoNormal><span lang=EN-US>Fix memory issue with
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RoccaContourDataBlocks not being released for garbage collection</span></p>
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@ -596,9 +632,9 @@ angle offsets applied to static hydrophones in viewer mode. This is now fixed. <
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<p class=MsoNormal><span lang=EN-US>Click tool bar: Correctly shows event
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selection options even if no species classification options are in place. </span></p>
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<p class=MsoNormal><span lang=EN-US>Fixed Landmarks: Earlier versions were ‘losing’
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these every time PAMGuard started or new data were loaded in viewer mode. Now
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fixed. </span></p>
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<p class=MsoNormal><span lang=EN-US>Fixed Landmarks: Earlier versions were
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‘losing’ these every time PAMGuard started or new data were loaded in viewer
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mode. Now fixed. </span></p>
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<p class=MsoNormal><span lang=EN-US>ROCCA: Fixed (another) memory leak which
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caused PAMGuard to crash when processing large data sets with the ROCCA
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@ -767,8 +803,9 @@ the TF FX display to crash if no data were displayed.</span></p>
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<p class=MsoNormal><span lang=EN-US>See major release notes for V 2.02.01
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below. </span></p>
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<p class=MsoNormal><span lang=EN-US>Bug 495: TD FX display throws NullPointerException
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if user has removed all data units and then moves mouse over display area.</span></p>
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<p class=MsoNormal><span lang=EN-US>Bug 495: TD FX display throws
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NullPointerException if user has removed all data units and then moves mouse
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over display area.</span></p>
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<h1><a name="_Latest_Version_2.02.01"></a><span lang=EN-US>Version 2.02.01
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October 2021</span></h1>
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@ -791,11 +828,11 @@ font-family:"Times New Roman",serif'> </span></p>
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<h2>File Format Change</h2>
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<p class=MsoNormal>Changes have been made to the binary file format to support the
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output of additional noise outputs for certain detectors (See below). Binary
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files created with this version will not be compatible with earlier versions
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2.01.### and below. This version will read and may convert earlier format
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binary files.</p>
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<p class=MsoNormal>Changes have been made to the binary file format to support
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the output of additional noise outputs for certain detectors (See below).
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Binary files created with this version will not be compatible with earlier
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versions 2.01.### and below. This version will read and may convert earlier
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format binary files.</p>
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<p class=MsoNormal style='margin-bottom:0cm'><span style='font-size:12.0pt;
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font-family:"Times New Roman",serif'> </span></p>
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@ -1181,10 +1218,10 @@ lang=EN-US> </span>Add functionality for bluetooth headsets. </p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
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lang=EN-US> </span>Add user-facing option to adjust the startup delay for the
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time-correction (Global Time module). This provides a workaround to speed up
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analysis of thousands of wav files (i.e. by setting startup delay to 0 instead
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of default value of 2000 ms). </p>
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lang=EN-US> </span>Add user-facing option to adjust the startup delay for the time-correction
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(Global Time module). This provides a workaround to speed up analysis of
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thousands of wav files (i.e. by setting startup delay to 0 instead of default
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value of 2000 ms). </p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>3. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
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@ -1415,9 +1452,9 @@ be compatible with this version, and vice-versa.</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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Java 12 is better at handling Windows scaling issues on high-DPI displays.
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Beyond that, users should not notice much of a difference between this version
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and previous beta releases.</p>
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Java 12 is better at handling Windows scaling issues on high-DPI displays. Beyond
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that, users should not notice much of a difference between this version and
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previous beta releases.</p>
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<!-- ************************************************************************************************************************** --><!-- ************************************************************************************************************************** -->
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@ -1706,8 +1743,8 @@ with installation and use of this version.</span></p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>1. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
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</span>Bug 338. Problem displaying coastlines and bathymetric contours around the
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dateline (+/- 180 longitude) in the map.</p>
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</span>Bug 338. Problem displaying coastlines and bathymetric contours around
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the dateline (+/- 180 longitude) in the map.</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
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@ -2218,8 +2255,8 @@ UID
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<p class=MsoNormal><span lang=EN-US>If old data are opened with the PAMGuard
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viewer they will automatically be converted. For safety, the original binary
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files will not be overwritten and the new data will be placed in a new folder
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on your computer with the same path as the old data, but suffixed with ‘_WithUID’,
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e.g. if your binary data were previously stored in the folder
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on your computer with the same path as the old data, but suffixed with
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‘_WithUID’, e.g. if your binary data were previously stored in the folder
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C:\MySurvey\binarydata the new data will be written to
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C:\MySurvey\binarydata_WithUID. </span></p>
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@ -2295,8 +2332,8 @@ Hawaii/Temperate Pacific/North Atlantic datasets. This has been corrected.</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2.</span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
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</span>Bug 320. Pamguard stopped reading Click Detector Event data from database
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when target motion analysis information was encountered. Corrected.</p>
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</span>Bug 320. Pamguard stopped reading Click Detector Event data from
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database when target motion analysis information was encountered. Corrected.</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>3.</span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
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@ -2578,9 +2615,9 @@ main click detector display. </span></p>
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<p class=MsoNormal><b><span lang=EN-US>Target Motion Analysis</span></b></p>
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<p class=MsoNormal><span lang=EN-US>A major piece of work has been undertaken
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to improve the Target Motion tracking with PAMGuard. Details are available in
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the online help. Users of the Click Detector will notice the following changes:</span></p>
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<p class=MsoNormal><span lang=EN-US>A major piece of work has been undertaken to
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improve the Target Motion tracking with PAMGuard. Details are available in the
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online help. Users of the Click Detector will notice the following changes:</span></p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>1.</span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
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@ -2752,8 +2789,8 @@ being imported into the new database. Problem 2 was that indexing of imported
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click events in the new database was incorrect. Both these issues have now been
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fixed. </span></p>
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<h1><a name="_Latest_Version_1.15.02"></a><span lang=EN-US>Version 1.15.02 March
|
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2016</span></h1>
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<h1><a name="_Latest_Version_1.15.02"></a><span lang=EN-US>Version 1.15.02
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March 2016</span></h1>
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<p class=MsoNormal>A number of small bug fixes following release of 1.15.00.</p>
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@ -2905,13 +2942,13 @@ for details. </span></p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>3.</span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
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</span><span lang=EN-US>GPS Loading into PAMGuard Viewer. This has been modified
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so that the rules governing GPS data collection and storage also apply when
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loading data from the database. For instance, if you've stored all GPS data,
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you've probably got a record every second in the database which can create
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memory overflows if you try to load a lot of data in the viewer. You can now
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tell PAMGuard to only load a data point every n seconds which will reduce the
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number of points loaded. Useful when making large scale overview maps of a
|
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</span><span lang=EN-US>GPS Loading into PAMGuard Viewer. This has been
|
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modified so that the rules governing GPS data collection and storage also apply
|
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when loading data from the database. For instance, if you've stored all GPS
|
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data, you've probably got a record every second in the database which can
|
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create memory overflows if you try to load a lot of data in the viewer. You can
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now tell PAMGuard to only load a data point every n seconds which will reduce
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the number of points loaded. Useful when making large scale overview maps of a
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survey. </span></p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>4.</span><span
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@ -3018,8 +3055,8 @@ allocation to allow more memory for the database interface. Hopefully Fixed. </p
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<p class=MsoListParagraph style='margin-left:38.25pt;text-indent:-20.25pt'><span
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lang=EN-AU>9.</span><span lang=EN-AU style='font-size:7.0pt;font-family:"Times New Roman",serif'>
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</span>Bug 239. <span lang=EN-AU>Fixed bug in the DIFAR module that was
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incorrectly preventing cross-fixes for some calls.</span></p>
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</span>Bug 239. <span lang=EN-AU>Fixed bug in the DIFAR module that was incorrectly
|
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preventing cross-fixes for some calls.</span></p>
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<p class=MsoNormal>Details of these bugs can be found at <a
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href="https://sourceforge.net/p/pamguard/bugs">https://sourceforge.net/p/pamguard/bugs</a></p>
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@ -3210,8 +3247,9 @@ to read on a time. Fixed</p>
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<p class=MsoNormal><i>Menu Layout</i></p>
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<p class=MsoNormal>The PAMGuard menus have been rearranged into a more intuitive
|
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grouping which we believe will help users find functionality more easily. </p>
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<p class=MsoNormal>The PAMGuard menus have been rearranged into a more
|
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intuitive grouping which we believe will help users find functionality more
|
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easily. </p>
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<p class=MsoNormal>'Detection' menu has been renamed to 'Settings' since many
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menu items within this menu were not directly to do with 'Detection'.</p>
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@ -3302,9 +3340,9 @@ of third octave noise bands. See online help for details. </p>
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<p class=MsoNormal><i>Filtered Noise Measurement</i> (Sound Processing Group)</p>
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<p class=MsoNormal>This module, developed by Douglas Gillespie, measures noise levels
|
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in a single frequency band using a variety of filter functions. See online help
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for details. </p>
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<p class=MsoNormal>This module, developed by Douglas Gillespie, measures noise
|
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levels in a single frequency band using a variety of filter functions. See
|
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online help for details. </p>
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<p class=MsoNormal><i>Envelope Tracing</i> (Beta Only, Sound Processing Group)</p>
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@ -3340,10 +3378,11 @@ different. Details are available in the online help. </p>
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<p class=MsoNormal><i>FLAC File Support</i></p>
|
||||
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||||
<p class=MsoNormal>Can now read raw audio data direct from FLAC files. <a
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href="http://en.wikipedia.org/wiki/FLAC">FLAC</a> is a lossless compression algorithm
|
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for audio data. Files, or folders of files are accessed in the same way as WAV
|
||||
and AIFF files in the Sound Acquisition module. In a future release we also
|
||||
hope to provide support for writing FLAC files from the sound recorder module. </p>
|
||||
href="http://en.wikipedia.org/wiki/FLAC">FLAC</a> is a lossless compression
|
||||
algorithm for audio data. Files, or folders of files are accessed in the same
|
||||
way as WAV and AIFF files in the Sound Acquisition module. In a future release
|
||||
we also hope to provide support for writing FLAC files from the sound recorder
|
||||
module. </p>
|
||||
|
||||
<p class=MsoNormal><i>Sound Recorder Module</i></p>
|
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|
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@ -3476,9 +3515,9 @@ to these menus to provide additional information to users. </p>
|
||||
|
||||
<p class=MsoNormal style='margin-left:36.0pt'><i>Radar Display</i></p>
|
||||
|
||||
<p class=MsoNormal style='margin-left:36.0pt'>Functionality has been added to
|
||||
the radar display so that bearings can be shown relative to either the vessel
|
||||
or to true North. </p>
|
||||
<p class=MsoNormal style='margin-left:36.0pt'>Functionality has been added to the
|
||||
radar display so that bearings can be shown relative to either the vessel or to
|
||||
true North. </p>
|
||||
|
||||
<p class=MsoNormal style='margin-left:36.0pt'>Better control of data in viewer
|
||||
mode, making is easy to scroll through and view data for short time periods. </p>
|
||||
@ -4116,8 +4155,8 @@ Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif
|
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|
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
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Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>This results in a major speed up of data exchange between modules and can
|
||||
lead to a x4 improvement in overall performance. </p>
|
||||
</span>This results in a major speed up of data exchange between modules and
|
||||
can lead to a x4 improvement in overall performance. </p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
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Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
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@ -4230,9 +4269,9 @@ Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif
|
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|
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Channel lists in output data streams of Decimator and other modules fixed,
|
||||
so that when channel numbers change, downstream modules configurations get the
|
||||
correct list of available channels. </p>
|
||||
</span>Channel lists in output data streams of Decimator and other modules
|
||||
fixed, so that when channel numbers change, downstream modules configurations
|
||||
get the correct list of available channels. </p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
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Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
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@ -4263,11 +4302,11 @@ Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif
|
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|
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>New menu functionality by right clicking on any of the tabs of the main
|
||||
tab control will allow the user to copy the tab contents to the system
|
||||
clipboard from where it can be copied into other programs (e.g. Word,
|
||||
Powerpoint, etc.).Some modules, such as the map, have this implemented in other
|
||||
menus (right click) and also allow printing. </p>
|
||||
</span>New menu functionality by right clicking on any of the tabs of the main tab
|
||||
control will allow the user to copy the tab contents to the system clipboard
|
||||
from where it can be copied into other programs (e.g. Word, Powerpoint,
|
||||
etc.).Some modules, such as the map, have this implemented in other menus
|
||||
(right click) and also allow printing. </p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -4335,8 +4374,8 @@ online help. </p>
|
||||
|
||||
<p class=MsoNormal><b>PAMGUARD Mixed Mode operation</b></p>
|
||||
|
||||
<p class=MsoNormal>Analyses data from wav or AIF file and synchronises it with
|
||||
GPS data reloaded from a database so that detected sounds may be correctly
|
||||
<p class=MsoNormal>Analyses data from wav or AIF file and synchronises it with GPS
|
||||
data reloaded from a database so that detected sounds may be correctly
|
||||
localised. Multiple display frames - enables PAMGUARD GUI to be split into
|
||||
multiple display windows, displayed on multiple monitors if desired. Enables
|
||||
the operator to simultaneously view the map and the click detector for example,
|
||||
@ -4855,8 +4894,8 @@ Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif
|
||||
<p class=MsoNormal> </p>
|
||||
|
||||
<p class=MsoNormal><a name="_Toc312065304"></a><a name="_Toc312063949"></a><span
|
||||
class=Heading2Char><span style='font-size:13.0pt'>1.0Beta 22 Jan 2008 - Pamguard
|
||||
starts two releases, core and beta release</span></span>, </p>
|
||||
class=Heading2Char><span style='font-size:13.0pt'>1.0Beta 22 Jan 2008 -
|
||||
Pamguard starts two releases, core and beta release</span></span>, </p>
|
||||
|
||||
<p class=MsoNormal>this is the beta release</p>
|
||||
|
||||
|
||||
@ -4,7 +4,7 @@
|
||||
<groupId>org.pamguard</groupId>
|
||||
<artifactId>Pamguard</artifactId>
|
||||
<name>Pamguard Java12+</name>
|
||||
<version>2.02.10bb</version>
|
||||
<version>2.02.10bc</version>
|
||||
<description>Pamguard for Java 12+, using Maven to control dependcies</description>
|
||||
<url>www.pamguard.org</url>
|
||||
<organization>
|
||||
|
||||
2
pom.xml
2
pom.xml
@ -5,7 +5,7 @@
|
||||
<modelVersion>4.0.0</modelVersion>
|
||||
<groupId>org.pamguard</groupId>
|
||||
<artifactId>Pamguard</artifactId>
|
||||
<version>2.02.10bb</version>
|
||||
<version>2.02.10bc</version>
|
||||
<name>Pamguard Java12+</name>
|
||||
<description>Pamguard for Java 12+, using Maven to control dependcies</description>
|
||||
<url>www.pamguard.org</url>
|
||||
|
||||
@ -810,6 +810,10 @@ public class FileInputSystem extends DaqSystem implements ActionListener, PamSe
|
||||
protected void collectFlacData() {
|
||||
FileInputStream fileStream;
|
||||
try {
|
||||
File currFile = getCurrentFile();
|
||||
if (currFile == null) {
|
||||
return;
|
||||
}
|
||||
fileStream = new FileInputStream(getCurrentFile());
|
||||
} catch (FileNotFoundException e) {
|
||||
e.printStackTrace();
|
||||
|
||||
@ -602,6 +602,7 @@ public class FolderInputSystem extends FileInputSystem implements PamSettings, D
|
||||
@Override
|
||||
public File getCurrentFile() {
|
||||
//System.out.println("All files: " + allFiles);
|
||||
// System.out.printf("Folder: getCurrentfile. on %d of %d\n", currentFile, allFiles.size());
|
||||
if (allFiles != null && allFiles.size() > currentFile) {
|
||||
return allFiles.get(currentFile);
|
||||
}
|
||||
|
||||
@ -31,12 +31,12 @@ public class PamguardVersionInfo {
|
||||
* Version number, major version.minorversion.sub-release.
|
||||
* Note: can't go higher than sub-release 'f'
|
||||
*/
|
||||
static public final String version = "2.02.10bb";
|
||||
static public final String version = "2.02.10bc";
|
||||
|
||||
/**
|
||||
* Release date
|
||||
*/
|
||||
static public final String date = "29 March 2024";
|
||||
static public final String date = "12 April 2024";
|
||||
|
||||
// /**
|
||||
// * Release type - Beta or Core
|
||||
|
||||
@ -102,7 +102,10 @@ public class KeyPanel {
|
||||
|
||||
}
|
||||
private void fillPanel() {
|
||||
|
||||
JPanel panel = this.panel;
|
||||
if (panel == null) {
|
||||
return;
|
||||
}
|
||||
panel.removeAll();
|
||||
|
||||
GridBagConstraints c = new GridBagConstraints();
|
||||
|
||||
@ -141,9 +141,11 @@ public class LookUpTables {
|
||||
// search for repeats.
|
||||
for (int i = 0; i < n-1; i++) {
|
||||
String code = list.get(i).getCode().trim();
|
||||
String topic1 = list.get(i).getTopic().trim();
|
||||
for (int j = i+1; j < n; j++) {
|
||||
String code2 = list.get(j).getCode().trim();
|
||||
if (code.equals(code2)) {
|
||||
String topic2 = list.get(j).getTopic().trim();
|
||||
if (code.equals(code2) && topic1.equals(topic2)) {
|
||||
isRepeat[j] = true;
|
||||
nRepeat++;
|
||||
}
|
||||
|
||||
Loading…
Reference in New Issue
Block a user