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Updated readme
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Douglas Gillespie
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README.html
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README.html
@ -467,14 +467,26 @@ name="_Latest_Version_2.02.08"></a><a name="_Version_2.02.09_June"></a><a
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name="_Version_2.02.10_January"></a><a name="_Version_2.02.11_April"></a>Version
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2.02.11 May 2024</h1>
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<p class=MsoNormal> </p>
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<h2>New Features</h2>
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<p class=MsoNormal>Deep Learning Classifier. Major upgrade to support for Deep
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Learning models in PAMGuard. See online help for details.</p>
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<p class=MsoNormal>Click detector: Remembers locations of displays and doesn’t
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continually reset them. </p>
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<p class=MsoNormal>Help for Matched Click Classifier</p>
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<p class=MsoNormal>Help for Matched Click Classifier.</p>
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<p class=MsoNormal>Project information dialog. This allows capture of essential
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project information to store with your data. See menu item Settings/Project
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information.</p>
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<h2>Tethys Database</h2>
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<p class=MsoNormal>Many users will be aware that we’re integrating an interface
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to the <a href="https://tethys.sdsu.edu/">Tethys Database</a> into PAMGuard.
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Some basic features are available for testing. If interested, please contact
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the PAMGuard support team. </p>
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<h2>Bug Fixes</h2>
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@ -497,14 +509,32 @@ as PAMGuard stops / restarts. </p>
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function fixed and now inserts correct times of start and ends of events into
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database. </p>
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<p class=MsoNormal>Clip generator. Changes to ensure PAMGuard keeps audio data
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long enough to make clips. In some circumstances data were being discarded too
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early so clips could not be created. </p>
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<p class=MsoNormal>Acquisition “Skip initial seconds” feature, designed to
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remove high sample levels e.g. from calibration tones at start of a soundtrap
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recording was not working with the click detector. This is fixed but replacing
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all data with 0’s and still sending data. Note that this may lead to
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artificially low noise measures at the start of a file. </p>
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<p class=MsoNormal>Data reprocessing options. Updated to ensure that the option
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"Start normally. Note risk of overwriting!" is always available. Also
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improved code naming binary files to attempt to push them to exact times,
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rather than a couple of seconds after the hour. </p>
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<p class=MsoNormal>Updated icons to improve display on high definition screens.
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</p>
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<h1>Version 2.02.10 January 2024</h1>
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<h2><span lang=EN-US>New Features</span></h2>
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<p class=MsoNormal><b><span lang=EN-US>Importing modules</span></b><span
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lang=EN-US> from other configurations: New options from file menu allowing
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import of specific modules, or module settings from other configurations. E.g.
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if you had three similar configurations and had set one of them up with a new
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lang=EN-US> from other configurations: New options from file menu allowing import
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of specific modules, or module settings from other configurations. E.g. if you
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had three similar configurations and had set one of them up with a new
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detector, or got the click classifier settings set up just right in one of
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those configurations, you can import the additional modules or the click
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detector settings easily into the other configurations. </span></p>
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@ -593,8 +623,8 @@ were reading local time, even when set to use UTC. </span></p>
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which mostly occurred when processing large datasets of many offline files, has
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been fixed.</span></p>
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<p class=MsoNormal><span lang=EN-US>Data Map: “Scroll To Data” pop-up menu, which
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didn’t always scroll to the correct place, is now fixed. </span></p>
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<p class=MsoNormal><span lang=EN-US>Data Map: “Scroll To Data” pop-up menu,
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which didn’t always scroll to the correct place, is now fixed. </span></p>
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<p class=MsoNormal><span lang=EN-US>Bearing Localiser offline: If reprocessing
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bearings, the localizer was not correctly loading required raw or FFT data to
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@ -694,8 +724,8 @@ details. </span></p>
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<p class=MsoNormal><span lang=EN-US>Changes to GUI to make dialog shorter for
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low DPI screens. </span></p>
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<p class=MsoNormal><span lang=EN-US>Complete rewrite of the classification
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system to have nested classifiers which can be enabled or disabled. </span></p>
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<p class=MsoNormal><span lang=EN-US>Complete rewrite of the classification system
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to have nested classifiers which can be enabled or disabled. </span></p>
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<p class=MsoNormal><span lang=EN-US>Changes to classification GUI to
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accommodate the new classification system.</span></p>
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@ -786,9 +816,9 @@ selections from drop down lists within any form.</p>
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<p class=MsoNormal> </p>
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<p class=MsoNormal>Note that updates have also been made to the Matlab
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interface to PAMGuard binary files, which has now also been migrated to GitHub
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at <a href="https://github.com/PAMGuard/PAMGuardMatlab">https://github.com/PAMGuard/PAMGuardMatlab</a>.
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<p class=MsoNormal>Note that updates have also been made to the Matlab interface
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to PAMGuard binary files, which has now also been migrated to GitHub at <a
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href="https://github.com/PAMGuard/PAMGuardMatlab">https://github.com/PAMGuard/PAMGuardMatlab</a>.
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</p>
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<h1> </h1>
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@ -803,8 +833,9 @@ the TF FX display to crash if no data were displayed.</span></p>
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<p class=MsoNormal><span lang=EN-US>See major release notes for V 2.02.01
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below. </span></p>
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<p class=MsoNormal><span lang=EN-US>Bug 495: TD FX display throws NullPointerException
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if user has removed all data units and then moves mouse over display area.</span></p>
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<p class=MsoNormal><span lang=EN-US>Bug 495: TD FX display throws
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NullPointerException if user has removed all data units and then moves mouse
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over display area.</span></p>
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<h1><a name="_Latest_Version_2.02.01"></a><span lang=EN-US>Version 2.02.01
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October 2021</span></h1>
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@ -992,8 +1023,9 @@ help</a>. </p>
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<p class=MsoNormal><b>If you are upgrading from a PAMGuard core release
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(1.15.xx), PAMGuard Version 2 contains major updates. You should read and
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understand the notes listed for <a href="#_Latest_Beta_Version_2.00.10">Beta Version
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2.00.10</a> before proceeding with installation and use of this version.</b></p>
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understand the notes listed for <a href="#_Latest_Beta_Version_2.00.10">Beta
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Version 2.00.10</a> before proceeding with installation and use of this
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version.</b></p>
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<p class=MsoNormal>This version of PAMGuard has been bundled with Java 13
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(release 13.0.1). PSFX files generated in previous beta releases (2.xx.xx)
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@ -1102,11 +1134,11 @@ understand the notes listed for <a href="#_Latest_Beta_Version_2.00.10">Beta
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Version 2.00.10</a> before proceeding with installation and use of this
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version.</b></p>
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<p class=MsoNormal>This version of PAMGuard has been bundled with Java 13 (release
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13.0.1). PSFX files generated in previous beta releases (2.xx.xx) should be
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compatible with this version, and vice-versa. PSF files generated in core
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releases (1.15.xx) can be loaded in this version, but will be converted to PSFX
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files when PAMGuard exits.</p>
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<p class=MsoNormal>This version of PAMGuard has been bundled with Java 13
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(release 13.0.1). PSFX files generated in previous beta releases (2.xx.xx)
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should be compatible with this version, and vice-versa. PSF files generated in
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core releases (1.15.xx) can be loaded in this version, but will be converted to
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PSFX files when PAMGuard exits.</p>
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<p class=MsoNormal><b><span lang=EN-US>Bug Fixes</span></b></p>
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@ -1445,9 +1477,9 @@ Detector display. </p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>1. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
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lang=EN-US> </span>This version of PAMGuard has been upgraded to make it compatible
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with Java 12. psfx files generated in previous beta releases should be
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compatible with this version, and vice-versa.</p>
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lang=EN-US> </span>This version of PAMGuard has been upgraded to make it
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compatible with Java 12. psfx files generated in previous beta releases should
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be compatible with this version, and vice-versa.</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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@ -1527,9 +1559,9 @@ with installation and use of this version.</span></p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>1. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
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</span>Bug 413. Binary file crashing during load, after a system failure. Failure
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could cause the file to become corrupt, which caused a crash during subsequent
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load</p>
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</span>Bug 413. Binary file crashing during load, after a system failure.
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Failure could cause the file to become corrupt, which caused a crash during
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subsequent load</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
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@ -1742,8 +1774,8 @@ with installation and use of this version.</span></p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>1. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
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</span>Bug 338. Problem displaying coastlines and bathymetric contours around the
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dateline (+/- 180 longitude) in the map.</p>
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</span>Bug 338. Problem displaying coastlines and bathymetric contours around
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the dateline (+/- 180 longitude) in the map.</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
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@ -2325,14 +2357,14 @@ lang=EN-US> </span></p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>1.</span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
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</span><span lang=EN-US>Bug 317. Rocca Module Data Purging. </span>The ROCCA
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module was not performing data purging when using classifiers developed for Hawaii/Temperate
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Pacific/North Atlantic datasets. This has been corrected.</p>
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</span><span lang=EN-US>Bug 317. Rocca Module Data Purging. </span>The ROCCA module
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was not performing data purging when using classifiers developed for
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Hawaii/Temperate Pacific/North Atlantic datasets. This has been corrected.</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2.</span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
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</span>Bug 320. Pamguard stopped reading Click Detector Event data from database
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when target motion analysis information was encountered. Corrected.</p>
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</span>Bug 320. Pamguard stopped reading Click Detector Event data from
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database when target motion analysis information was encountered. Corrected.</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>3.</span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
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@ -2437,9 +2469,9 @@ jar file will be required rather than a new bespoke PAMGuard installation.</span
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unchanged, in most cases simply requiring the addition of an interface class.
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Instructions for the development of new modules utilizing the plug-in
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scheme can be found <a href="http://www.pamguard.org/16_HowtomakePlug-Ins.html"
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target="_blank">here</a>. Plug-in modules can be downloaded from the PAMGuard
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website here, but developers are encouraged to host and maintain their own
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modules.</span></p>
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target="_blank">here</a>. Plug-in modules can be downloaded from the
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PAMGuard website here, but developers are encouraged to host and maintain their
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own modules.</span></p>
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<p class=MsoNormal><span lang=EN-US>Modules of interest to the general PAM
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community will remain as part of the core PAMGuard installation. However,
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@ -2466,9 +2498,9 @@ dependencies)</span></p>
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<p class=MsoNormal><b><span lang=EN-US>Other Changes</span></b></p>
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<p class=MsoNormal><span lang=EN-US>The installer has been updated to handle
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both 64 bit and 32 bit installations. PAMGuard psf files are now registered in
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the Windows Registry, so double-clicking on a psf file should run PAMGuard in
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<p class=MsoNormal><span lang=EN-US>The installer has been updated to handle both
|
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64 bit and 32 bit installations. PAMGuard psf files are now registered in the
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Windows Registry, so double-clicking on a psf file should run PAMGuard in
|
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normal mode (as opposed to Viewer or Mixed modes). Note that the Windows
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Registry can only hold a single executable reference for psf files; therefore,
|
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for users with multiple installations of PAMGuard, double-clicking on a psf
|
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@ -2607,8 +2639,8 @@ lang=EN-US>3.</span><span lang=EN-US style='font-size:7.0pt;font-family:"Times N
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<p class=MsoListParagraph style='margin-left:38.25pt;text-indent:-20.25pt'>4.<span
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style='font-size:7.0pt;font-family:"Times New Roman",serif'>
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</span><span lang=EN-US>Bug 290. Click bearings on spectrogram display plug in
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were reversed if the first hydrophone was behind the second hydrophone in the
|
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</span><span lang=EN-US>Bug 290. Click bearings on spectrogram display plug in were
|
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reversed if the first hydrophone was behind the second hydrophone in the
|
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configuration. This is now fixed so that it displays the same bearings as the
|
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main click detector display. </span></p>
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@ -2699,10 +2731,10 @@ since V 1.15.03:</p>
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<p class=MsoListParagraph style='margin-left:38.25pt;text-indent:-20.25pt'>1.<span
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style='font-size:7.0pt;font-family:"Times New Roman",serif'>
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</span>Bug 272. File types: Some File Open / File Save dialogs were allowing
|
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selection of all file types. e.g. Save Configuration As, Section of whistle
|
||||
classifier training file, Map file Selection, These have now been changed so
|
||||
that only the correct type of file can be selected.</p>
|
||||
</span>Bug 272. File types: Some File Open / File Save dialogs were allowing selection
|
||||
of all file types. e.g. Save Configuration As, Section of whistle classifier
|
||||
training file, Map file Selection, These have now been changed so that only the
|
||||
correct type of file can be selected.</p>
|
||||
|
||||
<p class=MsoListParagraph style='margin-left:38.25pt;text-indent:-20.25pt'>2.<span
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style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
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@ -2935,9 +2967,9 @@ See the help file for details.</span></p>
|
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
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</span><span lang=EN-US>Feature Request 45.</span><span lang=EN-US
|
||||
style='font-size:7.0pt'> </span><span lang=EN-US>Click classification settings
|
||||
export / import. Click classification settings can be exported individually to files
|
||||
and imported into other click detector configurations. See the help file for
|
||||
details. </span></p>
|
||||
export / import. Click classification settings can be exported individually to
|
||||
files and imported into other click detector configurations. See the help file
|
||||
for details. </span></p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>3.</span><span
|
||||
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -3094,9 +3126,9 @@ option with caution !</p>
|
||||
|
||||
<p class=MsoListParagraph style='margin-left:47.25pt;text-indent:-29.25pt'><span
|
||||
lang=EN-US>5.</span><span lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>The Open Office Database system has been removed from the list of
|
||||
available options since it is not reliable. If you require a free database
|
||||
solution we recommend you use the MySql Community Server <a
|
||||
</span>The Open Office Database system has been removed from the list of available
|
||||
options since it is not reliable. If you require a free database solution we
|
||||
recommend you use the MySql Community Server <a
|
||||
href="http://dev.mysql.com/downloads/mysql/">http://dev.mysql.com/downloads/mysql/</a></p>
|
||||
|
||||
<p class=MsoListParagraph style='margin-left:47.25pt;text-indent:-29.25pt'><span
|
||||
@ -3151,9 +3183,9 @@ crash when analyzing click event containing unclassified clicks</span></p>
|
||||
|
||||
<p class=MsoListParagraph style='margin-left:47.25pt;text-indent:-29.25pt'><span
|
||||
lang=EN-US>8.</span><span lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span><span lang=EN-US>Bug 230. Click Bearing Display. With a two hydrophone system,
|
||||
clicks calculated to have a bearing of exactly 180 degrees would be displayed
|
||||
at 0 degrees on the bearing time display.</span></p>
|
||||
</span><span lang=EN-US>Bug 230. Click Bearing Display. With a two hydrophone
|
||||
system, clicks calculated to have a bearing of exactly 180 degrees would be
|
||||
displayed at 0 degrees on the bearing time display.</span></p>
|
||||
|
||||
<p class=MsoListParagraph style='margin-left:36.75pt;text-indent:-18.75pt'><span
|
||||
lang=EN-US> </span></p>
|
||||
@ -3205,8 +3237,9 @@ total loss of the PAMGuard configuration in viewer mode and has been rectified.
|
||||
7.0pt;font-family:"Times New Roman",serif'> </span>Bug
|
||||
218. SAIL Acquisition card would hang the system. This has also been fixed. </p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'>7. Bug 219.
|
||||
Problems displaying Offline Click Events in the Viewer map have been fixed. </p>
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'>7. Bug
|
||||
219. Problems displaying Offline Click Events in the Viewer map have been
|
||||
fixed. </p>
|
||||
|
||||
<p class=MsoNormal> </p>
|
||||
|
||||
@ -3288,8 +3321,8 @@ Visual Methods</p>
|
||||
<p class=MsoNormal>'<i>Multi Threading</i>' menu item moved from 'Detection'
|
||||
(now 'Settings') to 'File'</p>
|
||||
|
||||
<p class=MsoNormal>'<i>Start</i>' and '<i>Stop</i>' menu items removed.
|
||||
PAMGuard should be started and stopped using the red and black buttons.</p>
|
||||
<p class=MsoNormal>'<i>Start</i>' and '<i>Stop</i>' menu items removed. PAMGuard
|
||||
should be started and stopped using the red and black buttons.</p>
|
||||
|
||||
<p class=MsoNormal><b>New Modules</b></p>
|
||||
|
||||
@ -3357,9 +3390,9 @@ help for details. </p>
|
||||
<p class=MsoNormal><i>Echo Detector and Sperm Whale IPI Computation</i> (Beta
|
||||
only, Sound Measurements Group)</p>
|
||||
|
||||
<p class=MsoNormal>These two modules, developed by Brian Miller of the
|
||||
Australian Antarctic Division can be used to estimate the inter pulse interval
|
||||
of sperm whale clicks. (No help available)</p>
|
||||
<p class=MsoNormal>These two modules, developed by Brian Miller of the Australian
|
||||
Antarctic Division can be used to estimate the inter pulse interval of sperm
|
||||
whale clicks. (No help available)</p>
|
||||
|
||||
<p class=MsoNormal> </p>
|
||||
|
||||
@ -3870,11 +3903,11 @@ Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif
|
||||
|
||||
<p class=MsoNormal>2. Improved offline viewer functionality. </p>
|
||||
|
||||
<p class=MsoNormal>The offline viewer is much improved with better data scrolling
|
||||
and the ability to view data either stored in the database or the binary
|
||||
storage system. Work has stated on functions which read and use data stored in
|
||||
audio files. This is currently limited to re-calculating and displaying
|
||||
displaying spectrogram data during viewer mode operation. </p>
|
||||
<p class=MsoNormal>The offline viewer is much improved with better data
|
||||
scrolling and the ability to view data either stored in the database or the
|
||||
binary storage system. Work has stated on functions which read and use data
|
||||
stored in audio files. This is currently limited to re-calculating and
|
||||
displaying displaying spectrogram data during viewer mode operation. </p>
|
||||
|
||||
<p class=MsoNormal>3. Heading sensor readout</p>
|
||||
|
||||
@ -4081,13 +4114,13 @@ port is closed. Might prevent a few problems when using a GPS. </p>
|
||||
|
||||
<p class=MsoNormal><b>Bug Fixes</b></p>
|
||||
|
||||
<p class=MsoNormal>Crashes caused in real time or Mixed Mode if the number of software
|
||||
channels exceeds the number of hydrophones configured in the array manager. It
|
||||
is of course illogical to have software channels which are not assigned to a
|
||||
hydrophone, so rather than entirely prevent PAMGUARD from crashing I have
|
||||
inserted additional checks into the hydrophone array dialog which will prevent
|
||||
the user from closing that dialog unless all software channels are assigned to
|
||||
a hydrophone. </p>
|
||||
<p class=MsoNormal>Crashes caused in real time or Mixed Mode if the number of
|
||||
software channels exceeds the number of hydrophones configured in the array
|
||||
manager. It is of course illogical to have software channels which are not
|
||||
assigned to a hydrophone, so rather than entirely prevent PAMGUARD from
|
||||
crashing I have inserted additional checks into the hydrophone array dialog
|
||||
which will prevent the user from closing that dialog unless all software
|
||||
channels are assigned to a hydrophone. </p>
|
||||
|
||||
<h2><span style='font-weight:normal'>Version 1.8.01 Beta February 2010</span></h2>
|
||||
|
||||
@ -4409,9 +4442,9 @@ now been fixed. </p>
|
||||
|
||||
<p class=MsoNormal><b>Sound Recorder</b></p>
|
||||
|
||||
<p class=MsoNormal>Level meters are shown for the correct channels (after channel
|
||||
numbering has been changed). Occasional crash due to synchronisation problems
|
||||
when multi-threading now fixed.</p>
|
||||
<p class=MsoNormal>Level meters are shown for the correct channels (after
|
||||
channel numbering has been changed). Occasional crash due to synchronisation
|
||||
problems when multi-threading now fixed.</p>
|
||||
|
||||
<p class=MsoNormal><b>Whistle Detector</b></p>
|
||||
|
||||
@ -4685,9 +4718,9 @@ Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Better drawing of held spectrogram when putting mark rectangles on a spectrogram
|
||||
display. All panels are now correctly frozen. The rectangle is drawn in red on
|
||||
the marked panel and in green on other panels. </p>
|
||||
</span>Better drawing of held spectrogram when putting mark rectangles on a
|
||||
spectrogram display. All panels are now correctly frozen. The rectangle is
|
||||
drawn in red on the marked panel and in green on other panels. </p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
@ -4703,9 +4736,9 @@ coming in through the ASIO card and back out through its headphone socket
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
</span>Operation will depend on the configuration of individual sound cards and
|
||||
how they are configured to mix incoming data with data from the PC. This is sometimes
|
||||
a physical switch on the card and sometimes a software configuration utility
|
||||
specific to that sound card. </p>
|
||||
how they are configured to mix incoming data with data from the PC. This is
|
||||
sometimes a physical switch on the card and sometimes a software configuration
|
||||
utility specific to that sound card. </p>
|
||||
|
||||
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
|
||||
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
|
||||
|
||||
Loading…
Reference in New Issue
Block a user