Merge pull request #35 from PAMGuard/main

Last fixes just after release 2.02.06

pom.xml

@@ -4,7 +4,7 @@
   <modelVersion>4.0.0</modelVersion>
   <groupId>org.pamguard</groupId>
   <artifactId>Pamguard</artifactId>
-  <version>2.02.06</version>
+  <version>2.02.06a</version>
   <name>Pamguard Java12+</name>
   <description>Pamguard for Java 12+, using Maven to control dependcies</description>
 	<url>www.pamguard.org</url>

src/Acquisition/FileInputSystem.java

@@ -167,6 +167,8 @@ public class FileInputSystem  extends DaqSystem implements ActionListener, PamSe
 
 	private SudListener sudListener;
 
+	private boolean fullyStopped;
+
 	public FileInputSystem(AcquisitionControl acquisitionControl) {
 		this.acquisitionControl = acquisitionControl;
 		PamSettingManager.getInstance().registerSettings(this);
@@ -739,6 +741,8 @@ public class FileInputSystem  extends DaqSystem implements ActionListener, PamSe
 
 		dontStop = true;
 		
+		fullyStopped = false;
+
 		theThread.start();
 
 		setStreamStatus(STREAM_RUNNING);
@@ -780,6 +784,9 @@ public class FileInputSystem  extends DaqSystem implements ActionListener, PamSe
 	}
 
 	public void systemHasStopped(boolean wasRunning) {
+		if (fullyStopped) {
+			return;
+		}
 		long stopTime = System.currentTimeMillis();
 		if (getCurrentFile() == null) {
 			return;
@@ -788,6 +795,7 @@ public class FileInputSystem  extends DaqSystem implements ActionListener, PamSe
 		double analSecs = (stopTime - fileStartTime) / 1000.;
 		System.out.println(String.format("File %s, SR=%dHz, length=%3.1fs took %3.1fs = %3.1fx real time",
 				getCurrentFile().getName(), (int)getSampleRate(), fileSecs, analSecs, fileSecs / analSecs));
+		fullyStopped = true;
 	}
 
 	/**
@@ -933,7 +941,7 @@ public class FileInputSystem  extends DaqSystem implements ActionListener, PamSe
 			 * PamDataUnits from them. Once a unit is created, tell this thread
 			 * to wait until it has been used by the main thread.
 			 */
-			System.out.println("File system start processing");
+//			System.out.println("File system start processing");
 			/*
 			 * File should have been opened in the constructor so just read it
 			 * in in chunks and pass to datablock

src/Acquisition/FolderInputSystem.java

@@ -150,7 +150,7 @@ public class FolderInputSystem extends FileInputSystem implements PamSettings{
 
 		public void actionPerformed(ActionEvent e) {
 
-			System.out.println("Restart later time action");
+//			System.out.println("Restart later time action");
 			newFileTimer.stop();
 			PamController.getInstance().startLater(false); //don't save settings on restarts
 
@@ -655,7 +655,7 @@ public class FolderInputSystem extends FileInputSystem implements PamSettings{
 		if (currentFile < allFiles.size()) {
 			// only restart if the file ended - not if it stopped
 			if (getStreamStatus() == STREAM_ENDED) {
-				System.out.println(String.format("Start new file timer (file %d/%d)",currentFile+1,allFiles.size()));
+//				System.out.println(String.format("Start new file timer (file %d/%d)",currentFile+1,allFiles.size()));
 				newFileTimer.start();
 			}
 		}
@@ -778,7 +778,7 @@ public class FolderInputSystem extends FileInputSystem implements PamSettings{
 
 	@Override
 	public boolean startSystem(AcquisitionControl daqControl) {
-		System.out.println("Start system");
+//		System.out.println("Start system");
 		setFolderProgress();
 		return super.startSystem(daqControl);
 	}

src/IshmaelDetector/EnergySumProcess.java

@@ -79,8 +79,9 @@ public class EnergySumProcess extends IshDetFnProcess {
 		EnergySumParams p = (EnergySumParams)ishDetControl.ishDetParams;
 		PamDataBlock inputDataBlock = getInputDataBlock();		//might be null
 		
-		if (inputDataBlock != null && inputDataBlock.getUnitsCount() > 0) {
-			savedGramHeight = ((FFTDataUnit)inputDataBlock.getLastUnit()).getFftData().length();	
+		FFTDataUnit lastFFTUnit = ((FFTDataUnit)inputDataBlock.getLastUnit());
+		if (lastFFTUnit != null) {
+			savedGramHeight = lastFFTUnit.getFftData().length();	
 			int len = savedGramHeight;
 			//Should be max(1,...) here, but FFT bin 0 has 0's in it.
 			loBin = Math.max(1,     (int) Math.floor(len * p.f0 / (sampleRate/2)));

src/IshmaelDetector/SgramCorrProcess.java

@@ -83,9 +83,14 @@ public class SgramCorrProcess extends IshDetFnProcess
 	protected void prepareMyParams() {
 		SgramCorrParams p = (SgramCorrParams)ishDetControl.ishDetParams;
 		PamDataBlock inputDataBlock = getInputDataBlock();
-		
-		if (inputDataBlock != null && inputDataBlock.getUnitsCount() > 0) {
-			savedGramHeight = ((FFTDataUnit)inputDataBlock.getLastUnit()).getFftData().length();
+		/*
+		 *  get the unit. first, then check it's null. Due to multithreading it's 
+		 *  possible that checking there are units and then asking for one,without
+		 *  synchronization will crash if the unit is deleted between those two calls.  
+		 */
+		FFTDataUnit lastFFTUnit = ((FFTDataUnit)inputDataBlock.getLastUnit());
+		if (lastFFTUnit != null) {
+			savedGramHeight = lastFFTUnit.getFftData().length();
 			/*
 			 * fft information is now stored in an FFTDataBLock, so no need to get
 			 * back to the process above it. 

src/Map/MapParametersDialog.java

@@ -63,7 +63,7 @@ public class MapParametersDialog extends PamDialog {
 	
 	private JCheckBox headingUp = new JCheckBox("Ship heading always up");
 	
-	private JCheckBox showSurface = new JCheckBox("Show sea sueface");
+	private JCheckBox showSurface = new JCheckBox("Show sea surface");
 
 	private MapFileManager mapFileManager;
 
@@ -261,7 +261,7 @@ public class MapParametersDialog extends PamDialog {
 
 		public HydrophonePanel() {
 			super();
-			setBorder(new TitledBorder("Hydropone Options"));
+			setBorder(new TitledBorder("Hydrophone Options"));
 			setLayout(new GridBagLayout());
 			GridBagConstraints c = new PamGridBagContraints();
 			c.gridx = 0;
@@ -272,7 +272,7 @@ public class MapParametersDialog extends PamDialog {
 			addComponent(this, colourByChannel, c);
 			c.gridy++;
 			c.gridwidth = 1;
-			addComponent(this, new JLabel("Symbox size ",  JLabel.RIGHT), c);
+			addComponent(this, new JLabel("Symbol size ",  JLabel.RIGHT), c);
 			c.gridx++;
 			symbolSize = new SpinnerNumberModel(Hydrophone.DefaultSymbolSize, 4, 30, 2);
 			addComponent(this, symbolSizeSpinner = new JSpinner(symbolSize), c);

src/PamController/PamController.java

@@ -1225,8 +1225,9 @@ public class PamController implements PamControllerInterface, PamSettings {
 		if (PamCalendar.isSoundFile() == false) {
 			PamCalendar.setSessionStartTime(PamCalendar.getTimeInMillis());
 		}
-
+		if (PamCalendar.isSoundFile() == false) {
 			System.out.printf("PAMGUARD Startup took %d milliseconds at time %s\n", startDelay, PamCalendar.formatDateTime(PamCalendar.getSessionStartTime()));
+		}
 		guiFrameManager.pamStarted();
 
 		return true;

src/PamController/PamguardVersionInfo.java

@@ -31,7 +31,7 @@ public class PamguardVersionInfo {
 	 * Version number, major version.minorversion.sub-release.
 	 * Note: can't go higher than sub-release 'f'
 	 */
-	static public final String version = "2.02.06";
+	static public final String version = "2.02.06a";
 	
 	/**
 	 * Release date

src/PamController/SettingsFileDialog.java

@@ -63,6 +63,7 @@ public class SettingsFileDialog extends PamDialog {
 		pan.add(BorderLayout.CENTER, p);
 		pan.add(BorderLayout.SOUTH, q);
 		
+		setMoveToMouse(false);
 		setDialogComponent(pan);
 	}
 	

src/PamView/PamObjectViewer.java

@@ -37,6 +37,7 @@ import javax.swing.JPanel;
 import javax.swing.JPopupMenu;
 import javax.swing.JScrollPane;
 import javax.swing.JTextField;
+import javax.swing.SwingUtilities;
 import javax.swing.Timer;
 import javax.swing.WindowConstants;
 
@@ -883,6 +884,7 @@ public class PamObjectViewer implements PamViewInterface, ComponentListener,
 
 			setVisible(true);
 			
+
 		}
 
 		private int getYOffset() {
@@ -1005,6 +1007,22 @@ public class PamObjectViewer implements PamViewInterface, ComponentListener,
 			return null;
 		}
 
+		@Override
+		public void setVisible(boolean vis) {
+			if (vis) {
+				SwingUtilities.invokeLater(new Runnable() {
+					/**
+					 * This seems to work and resize the text fields on high def displays. 
+					 */
+					@Override
+					public void run() {
+						pack();
+					}
+				});
+			}
+			super.setVisible(vis);
+		}
+
 		void fillPanelContent() {
 			p.removeAll();
 			GridBagLayout layout = new GridBagLayout();

src/PamView/dialog/PamDialog.java

@@ -64,6 +64,10 @@ abstract public class PamDialog extends JDialog {
 	private boolean warnDefaultSetting = true;
 	private CancelObserver cancelObserver;
 	private boolean firstShowing = true;
+/*
+ * 	Move to mouse position is parent is null 
+ */
+	private boolean moveToMouse = true;
 
 	public JPanel getButtonPanel() {
 		return buttonPanel;
@@ -281,7 +285,7 @@ abstract public class PamDialog extends JDialog {
 			synchronized (this) {
 				PamColors.getInstance().notifyContianer(this.getContentPane());
 			}
-			if (getOwner() == null) {
+			if (getOwner() == null && isMoveToMouse()) {
 				moveToMouseLocation();
 			}
 			if (firstShowing) {
@@ -691,4 +695,18 @@ abstract public class PamDialog extends JDialog {
 		}
 	}
 
+	/**
+	 * @return the moveToMouse
+	 */
+	public boolean isMoveToMouse() {
+		return moveToMouse;
+	}
+
+	/**
+	 * @param moveToMouse the moveToMouse to set
+	 */
+	public void setMoveToMouse(boolean moveToMouse) {
+		this.moveToMouse = moveToMouse;
+	}
+
 }

src/generalDatabase/DBSchemaWriter.java

@@ -6,8 +6,6 @@ import java.sql.Types;
 import java.util.ArrayList;
 import java.util.List;
 
-import javax.xml.parsers.DocumentBuilderFactory;
-
 import org.w3c.dom.Document;
 import org.w3c.dom.Element;