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MErge changes from DG dev fork (#140)

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* binary store count

Fix issue in binary store object count

* update V10aa/other for testing

* update V10aa/other for testing

* reenable buffer dumping

* update V to 10ac for testing

* Additional diagnostics

Additional output of CPU usage for each module when stopping

* V 2.02.10ad for testing

Fixed issue of finding correct raw data block

* Tidying

Lots of GUI improvement and code tidying. Functionality to export
gzipped documents to reduce traffic.

* V 2.02.10ba for user testing

* Tidy up click selector

Improve layout and tips on dialog and improve logic for manual and
automatic event types.

* Menu tide up

* Update nilus maven for PAMGuard

* Fix reprocess choices

Make sure the choice to continue anyway is always present.

* Improve start of binary file timing

Code to better get binary files to start right on the hour when processing files offline rather than half a sec or so later.

* Fix early data discard

Fix issue in clip generator: when running very fast offline raw data being discarded before clips are generated. Changed threading model slightly and increased data keep time by 2x the thread jitter to try to avoid this.

* Update pom to JSerialCom 2.11.0

* V2.02.11e fix file start skip

Skipping start of files was causing click detector to not find clicks. Changed code so first seconds are still sent, but with data set to 0, rather than not sending data since that was causing sample counts in different bits of PAMGuard to get out of synch.

* Update README.html
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@ -388,7 +388,7 @@ PamguardBeta_ViewerMode.exe):</p>
<h1><a name="_LATEST_VERSION_2.02.03"></a><a name="_VERSION_2.02.07_January"></a><a <h1><a name="_LATEST_VERSION_2.02.03"></a><a name="_VERSION_2.02.07_January"></a><a
name="_Latest_Version_2.02.10"></a><em><span style='font-size:12.0pt; name="_Latest_Version_2.02.10"></a><em><span style='font-size:12.0pt;
font-family:"Cambria",serif;font-style:normal'><a href="#_Version_2.02.11_April">Latest font-family:"Cambria",serif;font-style:normal'><a href="#_Version_2.02.11_April">Latest
Version 2.02.11 April 2024</a></span></em></h1> Version 2.03.00 June 2024</a></span></em></h1>
<h1><em><span style='font-size:12.0pt;font-family:"Cambria",serif;font-style: <h1><em><span style='font-size:12.0pt;font-family:"Cambria",serif;font-style:
normal'><a href="#_Version_2.02.10_January">Version 2.02.10 January 2024</a></span></em></h1> normal'><a href="#_Version_2.02.10_January">Version 2.02.10 January 2024</a></span></em></h1>
@ -465,22 +465,25 @@ Version 2.00.10 June 2017</a></span></h1>
name="_Latest_Version_2.02.06"></a><a name="_Latest_Version_2.02.07"></a><a name="_Latest_Version_2.02.06"></a><a name="_Latest_Version_2.02.07"></a><a
name="_Latest_Version_2.02.08"></a><a name="_Version_2.02.09_June"></a><a name="_Latest_Version_2.02.08"></a><a name="_Version_2.02.09_June"></a><a
name="_Version_2.02.10_January"></a><a name="_Version_2.02.11_April"></a>Version name="_Version_2.02.10_January"></a><a name="_Version_2.02.11_April"></a>Version
2.02.11 April 2024</h1> 2.03.00 June 2024</h1>
<p class=MsoNormal>&nbsp;</p> <p class=MsoNormal>&nbsp;</p>
<h2>New Features</h2> <h2>New Features</h2>
<p class=MsoNormal>Deep Learning Classifier. Major upgrade to support for Deep
Learning models in PAMGuard. See online help for details.</p>
<p class=MsoNormal>Click detector: Remembers locations of displays and doesn’t <p class=MsoNormal>Click detector: Remembers locations of displays and doesn’t
continually reset them. </p> continually reset them. </p>
<p class=MsoNormal>Help for Matched Click Classifier</p> <p class=MsoNormal>Help for Matched Click Classifier.</p>
<h2>Bug Fixes</h2> <h2>Bug Fixes</h2>
<p class=MsoNormal>Linking clicks to offline clicks table. We had a database <p class=MsoNormal>Linking clicks to offline clicks table. We had a database
that had become corrupted so added code to relink offline clicks to their corresponding that had become corrupted so added code to relink offline clicks to their
clicks from binary data. </p> corresponding clicks from binary data. </p>
<p class=MsoNormal>Drawing non-acoustic data: Data that were not associated <p class=MsoNormal>Drawing non-acoustic data: Data that were not associated
with any hydrophones, e.g. visual sightings in Logger forms were not drawing on with any hydrophones, e.g. visual sightings in Logger forms were not drawing on
@ -497,14 +500,28 @@ as PAMGuard stops / restarts. </p>
function fixed and now inserts correct times of start and ends of events into function fixed and now inserts correct times of start and ends of events into
database. </p> database. </p>
<p class=MsoNormal>Acquisition “Skip initial seconds” feature, designed to
remove high sample levels e.g. from calibration tones at start of a soundtrap
recording was not working with the click detector. This is fixed but replacing
all data with 0’s and still sending data. Note that this may lead to
artificially low noise measures at the start of a file. </p>
<p class=MsoNormal>Data reprocessing options. Updated to ensure that the option
&quot;Start normally. Note risk of overwriting!&quot; is always available. Also
improved code naming binary files to attempt to push them to exact times, rather
than a couple of seconds after the hour. </p>
<p class=MsoNormal>Updated icons to improve display on high definition screens.
</p>
<h1>Version 2.02.10 January 2024</h1> <h1>Version 2.02.10 January 2024</h1>
<h2><span lang=EN-US>New Features</span></h2> <h2><span lang=EN-US>New Features</span></h2>
<p class=MsoNormal><b><span lang=EN-US>Importing modules</span></b><span <p class=MsoNormal><b><span lang=EN-US>Importing modules</span></b><span
lang=EN-US> from other configurations: New options from file menu allowing import lang=EN-US> from other configurations: New options from file menu allowing
of specific modules, or module settings from other configurations. E.g. if you import of specific modules, or module settings from other configurations. E.g.
had three similar configurations and had set one of them up with a new if you had three similar configurations and had set one of them up with a new
detector, or got the click classifier settings set up just right in one of detector, or got the click classifier settings set up just right in one of
those configurations, you can import the additional modules or the click those configurations, you can import the additional modules or the click
detector settings easily into the other configurations. </span></p> detector settings easily into the other configurations. </span></p>
@ -532,9 +549,9 @@ correctly saving updated bearings to the database. Now fixed. </span></p>
<p class=MsoNormal><b><span lang=EN-US>ROCCA Classifier fixes</span></b></p> <p class=MsoNormal><b><span lang=EN-US>ROCCA Classifier fixes</span></b></p>
<p class=MsoNormal><span lang=EN-US>Allow Rocca to run without classifiers: Fixed <p class=MsoNormal><span lang=EN-US>Allow Rocca to run without classifiers:
bug that threw an error if no classifier files were &nbsp;specified in Rocca Fixed bug that threw an error if no classifier files were &nbsp;specified in
Params dialog</span></p> Rocca Params dialog</span></p>
<p class=MsoNormal><span lang=EN-US>Fix memory issue with <p class=MsoNormal><span lang=EN-US>Fix memory issue with
RoccaContourDataBlocks not being released for garbage collection</span></p> RoccaContourDataBlocks not being released for garbage collection</span></p>
@ -593,8 +610,8 @@ were reading local time, even when set to use UTC. </span></p>
which mostly occurred when processing large datasets of many offline files, has which mostly occurred when processing large datasets of many offline files, has
been fixed.</span></p> been fixed.</span></p>
<p class=MsoNormal><span lang=EN-US>Data Map: “Scroll To Data” pop-up menu, <p class=MsoNormal><span lang=EN-US>Data Map: “Scroll To Data” pop-up menu, which
which didn’t always scroll to the correct place, is now fixed. </span></p> didn’t always scroll to the correct place, is now fixed. </span></p>
<p class=MsoNormal><span lang=EN-US>Bearing Localiser offline: If reprocessing <p class=MsoNormal><span lang=EN-US>Bearing Localiser offline: If reprocessing
bearings, the localizer was not correctly loading required raw or FFT data to bearings, the localizer was not correctly loading required raw or FFT data to
@ -803,9 +820,8 @@ the TF FX display to crash if no data were displayed.</span></p>
<p class=MsoNormal><span lang=EN-US>See major release notes for V 2.02.01 <p class=MsoNormal><span lang=EN-US>See major release notes for V 2.02.01
below. </span></p> below. </span></p>
<p class=MsoNormal><span lang=EN-US>Bug 495: TD FX display throws <p class=MsoNormal><span lang=EN-US>Bug 495: TD FX display throws NullPointerException
NullPointerException if user has removed all data units and then moves mouse if user has removed all data units and then moves mouse over display area.</span></p>
over display area.</span></p>
<h1><a name="_Latest_Version_2.02.01"></a><span lang=EN-US>Version 2.02.01 <h1><a name="_Latest_Version_2.02.01"></a><span lang=EN-US>Version 2.02.01
October 2021</span></h1> October 2021</span></h1>
@ -993,9 +1009,8 @@ help</a>. </p>
<p class=MsoNormal><b>If you are upgrading from a PAMGuard core release <p class=MsoNormal><b>If you are upgrading from a PAMGuard core release
(1.15.xx), PAMGuard Version 2 contains major updates. You should read and (1.15.xx), PAMGuard Version 2 contains major updates. You should read and
understand the notes listed for <a href="#_Latest_Beta_Version_2.00.10">Beta understand the notes listed for <a href="#_Latest_Beta_Version_2.00.10">Beta Version
Version 2.00.10</a> before proceeding with installation and use of this 2.00.10</a> before proceeding with installation and use of this version.</b></p>
version.</b></p>
<p class=MsoNormal>This version of PAMGuard has been bundled with Java 13 <p class=MsoNormal>This version of PAMGuard has been bundled with Java 13
(release 13.0.1). PSFX files generated in previous beta releases (2.xx.xx) (release 13.0.1). PSFX files generated in previous beta releases (2.xx.xx)
@ -1104,11 +1119,11 @@ understand the notes listed for <a href="#_Latest_Beta_Version_2.00.10">Beta
Version 2.00.10</a> before proceeding with installation and use of this Version 2.00.10</a> before proceeding with installation and use of this
version.</b></p> version.</b></p>
<p class=MsoNormal>This version of PAMGuard has been bundled with Java 13 <p class=MsoNormal>This version of PAMGuard has been bundled with Java 13 (release
(release 13.0.1). PSFX files generated in previous beta releases (2.xx.xx) 13.0.1). PSFX files generated in previous beta releases (2.xx.xx) should be
should be compatible with this version, and vice-versa. PSF files generated in compatible with this version, and vice-versa. PSF files generated in core
core releases (1.15.xx) can be loaded in this version, but will be converted to releases (1.15.xx) can be loaded in this version, but will be converted to PSFX
PSFX files when PAMGuard exits.</p> files when PAMGuard exits.</p>
<p class=MsoNormal><b><span lang=EN-US>Bug Fixes</span></b></p> <p class=MsoNormal><b><span lang=EN-US>Bug Fixes</span></b></p>
@ -1218,10 +1233,10 @@ lang=EN-US> </span>Add functionality for bluetooth headsets. </p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2. </span><span <p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2. </span><span
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span><span lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span><span
lang=EN-US> </span>Add user-facing option to adjust the startup delay for the time-correction lang=EN-US> </span>Add user-facing option to adjust the startup delay for the
(Global Time module). This provides a workaround to speed up analysis of time-correction (Global Time module). This provides a workaround to speed up
thousands of wav files (i.e. by setting startup delay to 0 instead of default analysis of thousands of wav files (i.e. by setting startup delay to 0 instead
value of 2000 ms). </p> of default value of 2000 ms). </p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>3. </span><span <p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>3. </span><span
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span><span lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span><span
@ -1232,8 +1247,8 @@ lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nb
Add 15 minute data load option to viewer mode. </p> Add 15 minute data load option to viewer mode. </p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>5. </span><span <p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>5. </span><span
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span> lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span><span
Add 3D map for target motion module. </p> lang=EN-US> </span>Add 3D map for target motion module. </p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>6. </span><span <p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>6. </span><span
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span><span lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span><span
@ -1301,8 +1316,9 @@ PSFX files when PAMGuard exits.</p>
<p class=MsoNormal><b><span lang=EN-US>Bug Fixes</span></b></p> <p class=MsoNormal><b><span lang=EN-US>Bug Fixes</span></b></p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>1. </span><span <p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>1. </span><span
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span> lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span><span
Bug 433. Custom storage options were being lost when Pamguard restarted.</p> lang=EN-US> </span>Bug 433. Custom storage options were being lost when
Pamguard restarted.</p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2. </span><span <p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2. </span><span
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span><span lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span><span
@ -1446,15 +1462,15 @@ Detector display. </p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>1. </span><span <p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>1. </span><span
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span><span lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span><span
lang=EN-US> </span>This version of PAMGuard has been upgraded to make it lang=EN-US> </span>This version of PAMGuard has been upgraded to make it compatible
compatible with Java 12. psfx files generated in previous beta releases should with Java 12. psfx files generated in previous beta releases should be
be compatible with this version, and vice-versa.</p> compatible with this version, and vice-versa.</p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2. </span><span <p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2. </span><span
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span> lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span>
Java 12 is better at handling Windows scaling issues on high-DPI displays. Beyond Java 12 is better at handling Windows scaling issues on high-DPI displays.
that, users should not notice much of a difference between this version and Beyond that, users should not notice much of a difference between this version
previous beta releases.</p> and previous beta releases.</p>
<!-- ************************************************************************************************************************** --><!-- ************************************************************************************************************************** --> <!-- ************************************************************************************************************************** --><!-- ************************************************************************************************************************** -->
@ -1528,9 +1544,9 @@ with installation and use of this version.</span></p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>1. </span><span <p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>1. </span><span
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
</span>Bug 413. Binary file crashing during load, after a system failure. </span>Bug 413. Binary file crashing during load, after a system failure. Failure
Failure could cause the file to become corrupt, which caused a crash during could cause the file to become corrupt, which caused a crash during subsequent
subsequent load</p> load</p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2. </span><span <p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2. </span><span
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
@ -1688,8 +1704,8 @@ lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nb
<p class=MsoNormal><b><span lang=EN-US>Upgrades</span></b></p> <p class=MsoNormal><b><span lang=EN-US>Upgrades</span></b></p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>1. </span><span <p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>1. </span><span
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span> lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span><span
Improvement to Range Rings in Map display.</p> lang=EN-US> </span>Improvement to Range Rings in Map display.</p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2. </span><span <p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2. </span><span
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span> lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span>
@ -1743,8 +1759,8 @@ with installation and use of this version.</span></p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>1. </span><span <p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>1. </span><span
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
</span>Bug 338. Problem displaying coastlines and bathymetric contours around </span>Bug 338. Problem displaying coastlines and bathymetric contours around the
the dateline (+/- 180 longitude) in the map.</p> dateline (+/- 180 longitude) in the map.</p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2. </span><span <p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2. </span><span
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
@ -2327,13 +2343,13 @@ lang=EN-US>&nbsp;</span></p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>1.</span><span <p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>1.</span><span
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
</span><span lang=EN-US>Bug 317. Rocca Module Data Purging. </span>The ROCCA </span><span lang=EN-US>Bug 317. Rocca Module Data Purging. </span>The ROCCA
module was not performing data purging when using classifiers developed for module was not performing data purging when using classifiers developed for Hawaii/Temperate
Hawaii/Temperate Pacific/North Atlantic datasets. This has been corrected.</p> Pacific/North Atlantic datasets. This has been corrected.</p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2.</span><span <p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2.</span><span
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
</span>Bug 320. Pamguard stopped reading Click Detector Event data from </span>Bug 320. Pamguard stopped reading Click Detector Event data from database
database when target motion analysis information was encountered. Corrected.</p> when target motion analysis information was encountered. Corrected.</p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>3.</span><span <p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>3.</span><span
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
@ -2438,9 +2454,9 @@ jar file will be required rather than a new bespoke PAMGuard installation.</span
unchanged, in most cases simply requiring the addition of an interface class. unchanged, in most cases simply requiring the addition of an interface class.
&nbsp;Instructions for the development of new modules utilizing the plug-in &nbsp;Instructions for the development of new modules utilizing the plug-in
scheme can be found <a href="http://www.pamguard.org/16_HowtomakePlug-Ins.html" scheme can be found <a href="http://www.pamguard.org/16_HowtomakePlug-Ins.html"
target="_blank">here</a>. &nbsp;Plug-in modules can be downloaded from the target="_blank">here</a>. &nbsp;Plug-in modules can be downloaded from the PAMGuard
PAMGuard website here, but developers are encouraged to host and maintain their website here, but developers are encouraged to host and maintain their own
own modules.</span></p> modules.</span></p>
<p class=MsoNormal><span lang=EN-US>Modules of interest to the general PAM <p class=MsoNormal><span lang=EN-US>Modules of interest to the general PAM
community will remain as part of the core PAMGuard installation. However, community will remain as part of the core PAMGuard installation. However,
@ -2615,9 +2631,9 @@ main click detector display. </span></p>
<p class=MsoNormal><b><span lang=EN-US>Target Motion Analysis</span></b></p> <p class=MsoNormal><b><span lang=EN-US>Target Motion Analysis</span></b></p>
<p class=MsoNormal><span lang=EN-US>A major piece of work has been undertaken to <p class=MsoNormal><span lang=EN-US>A major piece of work has been undertaken
improve the Target Motion tracking with PAMGuard. Details are available in the to improve the Target Motion tracking with PAMGuard. Details are available in
online help. Users of the Click Detector will notice the following changes:</span></p> the online help. Users of the Click Detector will notice the following changes:</span></p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>1.</span><span <p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>1.</span><span
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
@ -2936,9 +2952,9 @@ See the help file for details.</span></p>
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
</span><span lang=EN-US>Feature Request 45.</span><span lang=EN-US </span><span lang=EN-US>Feature Request 45.</span><span lang=EN-US
style='font-size:7.0pt'> </span><span lang=EN-US>Click classification settings style='font-size:7.0pt'> </span><span lang=EN-US>Click classification settings
export / import. Click classification settings can be exported individually to export / import. Click classification settings can be exported individually to files
files and imported into other click detector configurations. See the help file and imported into other click detector configurations. See the help file for
for details. </span></p> details. </span></p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>3.</span><span <p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>3.</span><span
lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
@ -3055,8 +3071,8 @@ allocation to allow more memory for the database interface. Hopefully Fixed. </p
<p class=MsoListParagraph style='margin-left:38.25pt;text-indent:-20.25pt'><span <p class=MsoListParagraph style='margin-left:38.25pt;text-indent:-20.25pt'><span
lang=EN-AU>9.</span><span lang=EN-AU style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; lang=EN-AU>9.</span><span lang=EN-AU style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
</span>Bug 239. <span lang=EN-AU>Fixed bug in the DIFAR module that was incorrectly </span>Bug 239. <span lang=EN-AU>Fixed bug in the DIFAR module that was
preventing cross-fixes for some calls.</span></p> incorrectly preventing cross-fixes for some calls.</span></p>
<p class=MsoNormal>Details of these bugs can be found at <a <p class=MsoNormal>Details of these bugs can be found at <a
href="https://sourceforge.net/p/pamguard/bugs">https://sourceforge.net/p/pamguard/bugs</a></p> href="https://sourceforge.net/p/pamguard/bugs">https://sourceforge.net/p/pamguard/bugs</a></p>
@ -3152,9 +3168,9 @@ crash when analyzing click event containing unclassified clicks</span></p>
<p class=MsoListParagraph style='margin-left:47.25pt;text-indent:-29.25pt'><span <p class=MsoListParagraph style='margin-left:47.25pt;text-indent:-29.25pt'><span
lang=EN-US>8.</span><span lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; lang=EN-US>8.</span><span lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
</span><span lang=EN-US>Bug 230. Click Bearing Display. With a two hydrophone </span><span lang=EN-US>Bug 230. Click Bearing Display. With a two hydrophone system,
system, clicks calculated to have a bearing of exactly 180 degrees would be clicks calculated to have a bearing of exactly 180 degrees would be displayed
displayed at 0 degrees on the bearing time display.</span></p> at 0 degrees on the bearing time display.</span></p>
<p class=MsoListParagraph style='margin-left:36.75pt;text-indent:-18.75pt'><span <p class=MsoListParagraph style='margin-left:36.75pt;text-indent:-18.75pt'><span
lang=EN-US>&nbsp;</span></p> lang=EN-US>&nbsp;</span></p>
@ -3206,9 +3222,8 @@ total loss of the PAMGuard configuration in viewer mode and has been rectified.
7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span>Bug 7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span>Bug
218. SAIL Acquisition card would hang the system. This has also been fixed. </p> 218. SAIL Acquisition card would hang the system. This has also been fixed. </p>
<p class=MsoListParagraph style='text-indent:-18.0pt'>7.&nbsp;&nbsp;&nbsp; Bug <p class=MsoListParagraph style='text-indent:-18.0pt'>7.&nbsp;&nbsp;&nbsp; Bug 219.
219. Problems displaying Offline Click Events in the Viewer map have been Problems displaying Offline Click Events in the Viewer map have been fixed. </p>
fixed. </p>
<p class=MsoNormal>&nbsp;</p> <p class=MsoNormal>&nbsp;</p>
@ -3515,9 +3530,9 @@ to these menus to provide additional information to users. &nbsp;</p>
<p class=MsoNormal style='margin-left:36.0pt'><i>Radar Display</i></p> <p class=MsoNormal style='margin-left:36.0pt'><i>Radar Display</i></p>
<p class=MsoNormal style='margin-left:36.0pt'>Functionality has been added to the <p class=MsoNormal style='margin-left:36.0pt'>Functionality has been added to
radar display so that bearings can be shown relative to either the vessel or to the radar display so that bearings can be shown relative to either the vessel
true North. </p> or to true North. </p>
<p class=MsoNormal style='margin-left:36.0pt'>Better control of data in viewer <p class=MsoNormal style='margin-left:36.0pt'>Better control of data in viewer
mode, making is easy to scroll through and view data for short time periods. </p> mode, making is easy to scroll through and view data for short time periods. </p>
@ -3872,11 +3887,11 @@ Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif
<p class=MsoNormal>2. Improved offline viewer functionality. </p> <p class=MsoNormal>2. Improved offline viewer functionality. </p>
<p class=MsoNormal>The offline viewer is much improved with better data <p class=MsoNormal>The offline viewer is much improved with better data scrolling
scrolling and the ability to view data either stored in the database or the and the ability to view data either stored in the database or the binary
binary storage system. Work has stated on functions which read and use data storage system. Work has stated on functions which read and use data stored in
stored in audio files. This is currently limited to re-calculating and audio files. This is currently limited to re-calculating and displaying
displaying displaying spectrogram data during viewer mode operation.&nbsp; </p> displaying spectrogram data during viewer mode operation.&nbsp; </p>
<p class=MsoNormal>3. Heading sensor readout</p> <p class=MsoNormal>3. Heading sensor readout</p>
@ -4083,13 +4098,13 @@ port is closed. Might prevent a few problems when using a GPS. </p>
<p class=MsoNormal><b>Bug Fixes</b></p> <p class=MsoNormal><b>Bug Fixes</b></p>
<p class=MsoNormal>Crashes caused in real time or Mixed Mode if the number of <p class=MsoNormal>Crashes caused in real time or Mixed Mode if the number of software
software channels exceeds the number of hydrophones configured in the array channels exceeds the number of hydrophones configured in the array manager. It
manager. It is of course illogical to have software channels which are not is of course illogical to have software channels which are not assigned to a
assigned to a hydrophone, so rather than entirely prevent PAMGUARD from hydrophone, so rather than entirely prevent PAMGUARD from crashing I have
crashing I have inserted additional checks into the hydrophone array dialog inserted additional checks into the hydrophone array dialog which will prevent
which will prevent the user from closing that dialog unless all software the user from closing that dialog unless all software channels are assigned to
channels are assigned to a hydrophone. </p> a hydrophone. </p>
<h2><span style='font-weight:normal'>Version 1.8.01 Beta February 2010</span></h2> <h2><span style='font-weight:normal'>Version 1.8.01 Beta February 2010</span></h2>
@ -4302,11 +4317,11 @@ Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family: <p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
</span>New menu functionality by right clicking on any of the tabs of the main tab </span>New menu functionality by right clicking on any of the tabs of the main
control will allow the user to copy the tab contents to the system clipboard tab control will allow the user to copy the tab contents to the system
from where it can be copied into other programs (e.g. Word, Powerpoint, clipboard from where it can be copied into other programs (e.g. Word,
etc.).Some modules, such as the map, have this implemented in other menus Powerpoint, etc.).Some modules, such as the map, have this implemented in other
(right click) and also allow printing.&nbsp; </p> menus (right click) and also allow printing.&nbsp; </p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family: <p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
@ -4374,8 +4389,8 @@ online help. </p>
<p class=MsoNormal><b>PAMGUARD Mixed Mode operation</b></p> <p class=MsoNormal><b>PAMGUARD Mixed Mode operation</b></p>
<p class=MsoNormal>Analyses data from wav or AIF file and synchronises it with GPS <p class=MsoNormal>Analyses data from wav or AIF file and synchronises it with
data reloaded from a database so that detected sounds may be correctly GPS data reloaded from a database so that detected sounds may be correctly
localised. Multiple display frames - enables PAMGUARD GUI to be split into localised. Multiple display frames - enables PAMGUARD GUI to be split into
multiple display windows, displayed on multiple monitors if desired. Enables multiple display windows, displayed on multiple monitors if desired. Enables
the operator to simultaneously view the map and the click detector for example, the operator to simultaneously view the map and the click detector for example,
@ -4411,9 +4426,9 @@ now been fixed. </p>
<p class=MsoNormal><b>Sound Recorder</b></p> <p class=MsoNormal><b>Sound Recorder</b></p>
<p class=MsoNormal>Level meters are shown for the correct channels (after <p class=MsoNormal>Level meters are shown for the correct channels (after channel
channel numbering has been changed). Occasional crash due to synchronisation numbering has been changed). Occasional crash due to synchronisation problems
problems when &nbsp;multi-threading now fixed.</p> when &nbsp;multi-threading now fixed.</p>
<p class=MsoNormal><b>Whistle Detector</b></p> <p class=MsoNormal><b>Whistle Detector</b></p>
@ -4687,9 +4702,9 @@ Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family: <p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
</span>Better drawing of held spectrogram when putting mark rectangles on a </span>Better drawing of held spectrogram when putting mark rectangles on a spectrogram
spectrogram display. All panels are now correctly frozen. The rectangle is display. All panels are now correctly frozen. The rectangle is drawn in red on
drawn in red on the marked panel and in green on other panels. </p> the marked panel and in green on other panels. </p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family: <p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
@ -4705,9 +4720,9 @@ coming in through the ASIO card and back out through its headphone socket
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family: <p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
</span>Operation will depend on the configuration of individual sound cards and </span>Operation will depend on the configuration of individual sound cards and
how they are configured to mix incoming data with data from the PC. This is how they are configured to mix incoming data with data from the PC. This is sometimes
sometimes a physical switch on the card and sometimes a software configuration a physical switch on the card and sometimes a software configuration utility
utility specific to that sound card. </p> specific to that sound card. </p>
<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family: <p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;