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Update README.html
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Douglas Gillespie
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README.html
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README.html
@ -465,10 +465,32 @@ Version 2.00.10 June 2017</a></span></h1>
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name="_Latest_Version_2.02.05"></a><a name="_Latest_Version_2.02.06"></a><a
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name="_Latest_Version_2.02.07"></a><a name="_Latest_Version_2.02.08"></a><a
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name="_Version_2.02.09_June"></a><a name="_Version_2.02.10_January"></a><a
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name="_Version_2.02.11_April"></a>Version 2.02.13 August 2024</h1>
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name="_Version_2.02.11_April"></a>Version whatevers next</h1>
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<h2>New Features</h2>
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<p class=MsoNormal> </p>
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<h2>Bug Fixes</h2>
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<p class=MsoNormal>Ishmael Matched Filter detector. Improved correlation
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algorithm to use correct data normalisation (and a faster FFT). </p>
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<p class=MsoNormal>Ishamel detector graphics. Improved graphics (spectrogram
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plugins) to work when scrolling the spectrogram and to have better automatic
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scaling. </p>
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<p class=MsoNormal>Folder processing: At startup, while PAMGuard catalogues the
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sound files, a progress bar is shown. This doesn’t change anything, or speed up
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the process, but does at least let the user know what’s happening. </p>
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<p class=MsoNormal>No sound card ? If no sound cards are present on your
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computer (or if no headphones are attached, even though a sound card is
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present) when processing files offline, PAMGuard will still slow the analysis
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rate as it would if a soundcard were present. </p>
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<h1>Version 2.02.13 August 2024</h1>
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<h2>New Features</h2>
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<p class=MsoNormal>Deep Learning Classifier. Major upgrade to support for Deep
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@ -490,9 +512,9 @@ the binary store system (likely the same as the acquisition) or data from
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Logger forms. This system will be extended to other modules in the near future.
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</p>
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<p class=MsoNormal>Added a new exporter which allows users to export data to .mat
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(MATLAB, Python), .RData (open in R) or .wav files (open in Sonic Visualiser,
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Audacity etc.)</p>
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<p class=MsoNormal>Added a new exporter which allows users to export data to
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.mat (MATLAB, Python), .RData (open in R) or .wav files (open in Sonic
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Visualiser, Audacity etc.)</p>
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<h2>Tethys Database</h2>
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@ -593,11 +615,11 @@ and stop PamObserver Timer to</span></p>
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<p class=MsoNormal><span lang=EN-US>force release</span></p>
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<p class=MsoNormal><span lang=EN-US>Fix problem tracing whistles in Rocca spectrogram
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pop-up: Whistle and raw data were being cleared before the user had time to
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trace out the whistle, causing PAMGuard to throw an exception. Both were
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already being cleared when the pop-up window is closed, so no need to do it
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here.</span></p>
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<p class=MsoNormal><span lang=EN-US>Fix problem tracing whistles in Rocca
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spectrogram pop-up: Whistle and raw data were being cleared before the user had
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time to trace out the whistle, causing PAMGuard to throw an exception.
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Both were already being cleared when the pop-up window is closed, so no need to
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do it here.</span></p>
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<p class=MsoNormal><b><span lang=EN-US>DIFAR Module</span></b><span lang=EN-US>:
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Bug crashing the module with null pointer errors fixed.</span></p>
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@ -678,8 +700,8 @@ the first two characters of the string name may be. </span></p>
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data for static hydrophones had a bug whereby it would continually ‘forget’
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angle offsets applied to static hydrophones in viewer mode. This is now fixed. </span></p>
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<p class=MsoNormal><span lang=EN-US>Click tool bar: Correctly shows event selection
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options even if no species classification options are in place. </span></p>
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<p class=MsoNormal><span lang=EN-US>Click tool bar: Correctly shows event
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selection options even if no species classification options are in place. </span></p>
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<p class=MsoNormal><span lang=EN-US>Fixed Landmarks: Earlier versions were
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‘losing’ these every time PAMGuard started or new data were loaded in viewer
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@ -699,10 +721,10 @@ processing.</span></p>
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<h2><span lang=EN-US>New Features</span></h2>
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<p class=MsoNormal><span lang=EN-US>New sound type for simulated sounds which generates
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random chirps between around 200 and 800Hz, roughly the frequency you’d expect
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sound from higher frequency baleen whales, such as humpbacks, to vocalise at.
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</span></p>
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<p class=MsoNormal><span lang=EN-US>New sound type for simulated sounds which
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generates random chirps between around 200 and 800Hz, roughly the frequency
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you’d expect sound from higher frequency baleen whales, such as humpbacks, to
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vocalise at. </span></p>
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<p class=MsoNormal><span lang=EN-US>Hiding tool tips. A menu item to
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permanently turn off all tool tips, or tap the ‘Esc’ key to turn them off for 6
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@ -1461,8 +1483,8 @@ txt file as well. File is stored in user.home/Pamguard folder - look under the
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Help menu item for a shortcut to open the folder. </p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>6. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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Implemented a simple UDP output for PAMGuard alarms. </p>
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
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lang=EN-US> </span>Implemented a simple UDP output for PAMGuard alarms. </p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>7. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
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@ -1569,8 +1591,8 @@ lang=EN-US> </span>Updates to the Ishmael detectors.</p>
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<h1><a name="_Latest_Beta_Version_2.00.16"></a><span lang=EN-US>Beta Version
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2.00.16 May 2019</span></h1>
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<p class=MsoNormal><span lang=EN-US>PAMGuard Version 2 contains major updates.
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You should read and understand the notes listed for <a
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<p class=MsoNormal><span lang=EN-US>PAMGuard Version 2 contains major updates. You
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should read and understand the notes listed for <a
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href="#_Latest_Beta_Version_2.00.10">Beta Version 2.00.10</a> before proceeding
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with installation and use of this version.</span></p>
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@ -1660,10 +1682,10 @@ lang=EN-US> </span>Added adaptive noise filter to Ishmael Detectors.</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>5. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
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lang=EN-US> </span>Many upgrades to the Sound Playback module, including a
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high-pass filter, gain control, and the ability to mix wavefrom and envelope
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data together to listen to high-frequency clicks and dolphin whistles at the
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same time.</p>
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lang=EN-US> </span>Many upgrades to the Sound Playback module, including a high-pass
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filter, gain control, and the ability to mix wavefrom and envelope data
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together to listen to high-frequency clicks and dolphin whistles at the same
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time.</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>6. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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@ -1761,9 +1783,9 @@ lang=EN-US> </span>New methods for handling and logging time offsets from the
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PC clock based either on GPS NMEA data or on pings of an NTP time server.</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>6. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span>
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Improvements to Difar module graphics - easier reading, better visibility at
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night.</p>
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
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lang=EN-US> </span>Improvements to Difar module graphics - easier reading,
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better visibility at night.</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>7. </span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'> </span><span
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@ -2208,9 +2230,9 @@ showing. </p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>2.</span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
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</span><span lang=EN-US>Bug 323. Difar module. </span>Fixed a couple of small
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bugs in the DIFAR system which caused it to not work if old configuratins were
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used. </p>
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</span><span lang=EN-US>Bug 323. Difar module. </span>Fixed a couple of small bugs
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in the DIFAR system which caused it to not work if old configuratins were used.
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</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span lang=EN-US>3.</span><span
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lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
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@ -2341,11 +2363,11 @@ PAMGuard help files (Localisation/Detection Group Localiser).</span></p>
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<h3><span lang=EN-US>Display Colours</span></h3>
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<p class=MsoNormal><span lang=EN-US>A new system for handling display colours
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has been implemented across all PAMGuard displays. This gives greater
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flexibility to the user to control how data units are shown. For instance, you
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might simply want to show clicks in blue and whistles in green. However, for
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clicks and whistles that have been assigned to a Detection Group, you may want
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to colour them by the colour assigned to the group. </span></p>
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has been implemented across all PAMGuard displays. This gives greater flexibility
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to the user to control how data units are shown. For instance, you might simply
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want to show clicks in blue and whistles in green. However, for clicks and
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whistles that have been assigned to a Detection Group, you may want to colour
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them by the colour assigned to the group. </span></p>
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<h3><span lang=EN-US>Using Old PAMGuard Configurations</span></h3>
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@ -2471,10 +2493,9 @@ January 2017</span></h1>
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<p class=MsoListParagraph style='margin-left:38.25pt;text-indent:-20.25pt'><span
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lang=EN-US>1.</span><span lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
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</span><span lang=EN-US>Bug 306. Certain methods have been querying
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AcousticDataUnit.getDuration and expecting to receive a response in
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milliseconds. However, getDuration actually returns the number of samples.
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This has been corrected. </span></p>
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</span><span lang=EN-US>Bug 306. Certain methods have been querying AcousticDataUnit.getDuration
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and expecting to receive a response in milliseconds. However, getDuration
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actually returns the number of samples. This has been corrected. </span></p>
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<p class=MsoNormal><b><span lang=EN-US>Plug-Ins</span></b></p>
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@ -2750,10 +2771,10 @@ since V 1.15.03:</p>
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<p class=MsoListParagraph style='margin-left:38.25pt;text-indent:-20.25pt'>1.<span
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style='font-size:7.0pt;font-family:"Times New Roman",serif'>
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</span>Bug 272. File types: Some File Open / File Save dialogs were allowing
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selection of all file types. e.g. Save Configuration As, Section of whistle
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classifier training file, Map file Selection, These have now been changed so
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that only the correct type of file can be selected.</p>
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</span>Bug 272. File types: Some File Open / File Save dialogs were allowing selection
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of all file types. e.g. Save Configuration As, Section of whistle classifier
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training file, Map file Selection, These have now been changed so that only the
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correct type of file can be selected.</p>
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<p class=MsoListParagraph style='margin-left:38.25pt;text-indent:-20.25pt'>2.<span
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style='font-size:7.0pt;font-family:"Times New Roman",serif'>
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@ -2811,9 +2832,9 @@ easy to understand options have been developed in a new options dialog.</p>
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<p class=MsoListParagraph style='margin-left:38.25pt;text-indent:-20.25pt'>9.<span
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style='font-size:7.0pt;font-family:"Times New Roman",serif'>
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</span>Bug 281. Click classification dialog has grown too big to fit on the screen.
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The options have now been split across three tabbed panes which solves the
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problem.</p>
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</span>Bug 281. Click classification dialog has grown too big to fit on the
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screen. The options have now been split across three tabbed panes which solves
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the problem.</p>
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<p class=MsoListParagraph style='margin-left:38.25pt;text-indent:-20.25pt'>10.<span
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style='font-size:7.0pt;font-family:"Times New Roman",serif'>
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@ -3117,10 +3138,10 @@ href="https://sourceforge.net/p/pamguard/bugs">https://sourceforge.net/p/pamguar
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<p class=MsoListParagraph style='margin-left:47.25pt;text-indent:-29.25pt'><span
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lang=EN-US>1.</span><span lang=EN-US style='font-size:7.0pt;font-family:"Times New Roman",serif'>
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</span>Spectrogram annotation marks. A simple system for marking spectrograms during
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real time analysis has been incorporated. To use it, add the module, in the
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spectrogram settings, select the annotation marks in the 'Mark Observers' tab
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of the spectrogram configuration dialog, and also right click on the
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</span>Spectrogram annotation marks. A simple system for marking spectrograms
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during real time analysis has been incorporated. To use it, add the module, in
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the spectrogram settings, select the annotation marks in the 'Mark Observers'
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tab of the spectrogram configuration dialog, and also right click on the
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spectrogram and select to display the annotations. Annotations are saved to the
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database so you will also need a database module in your configuration. </p>
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@ -3390,9 +3411,9 @@ of third octave noise bands. See online help for details. </p>
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<p class=MsoNormal><i>Filtered Noise Measurement</i> (Sound Processing Group)</p>
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<p class=MsoNormal>This module, developed by Douglas Gillespie, measures noise levels
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in a single frequency band using a variety of filter functions. See online help
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for details. </p>
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<p class=MsoNormal>This module, developed by Douglas Gillespie, measures noise
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levels in a single frequency band using a variety of filter functions. See
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online help for details. </p>
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<p class=MsoNormal><i>Envelope Tracing</i> (Beta Only, Sound Processing Group)</p>
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@ -3579,15 +3600,15 @@ other data sources for the PAMGuard viewer. </p>
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<p class=MsoNormal style='margin-left:36.0pt'><i>Database</i></p>
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<p class=MsoNormal style='margin-left:36.0pt'>Can now copy data from binary
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storage to the database offline for any module having both binary and database
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storage. </p>
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<p class=MsoNormal style='margin-left:36.0pt'>Can now copy data from binary storage
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to the database offline for any module having both binary and database storage.
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</p>
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<p class=MsoNormal style='margin-left:36.0pt'>Can create a blank MS Access
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database (2007 and later *.accdb formats only).</p>
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<p class=MsoNormal style='margin-left:36.0pt'>Can open MS Access from within
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PAMGuard to make it easier to view database content. </p>
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<p class=MsoNormal style='margin-left:36.0pt'>Can open MS Access from within PAMGuard
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to make it easier to view database content. </p>
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<p class=MsoNormal style='margin-left:36.0pt'>Support for open office
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databases.</p>
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@ -3667,8 +3688,8 @@ margin-left:36.0pt'> </p>
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<p class=MsoListParagraph style='margin-left:54.0pt;text-indent:-18.0pt'><i>Ishmael
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Detection Modules</i></p>
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<p class=MsoListParagraph style='margin-left:54.0pt;text-indent:-18.0pt'>We
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have implemented database storage for output of these modules. </p>
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<p class=MsoListParagraph style='margin-left:54.0pt;text-indent:-18.0pt'>We have
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implemented database storage for output of these modules. </p>
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<p class=MsoNormal><b>Bug fixes</b></p>
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@ -4342,9 +4363,9 @@ more details. </p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
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Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
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</span>Simulated sound sources. New sound source simulator. Accessible from
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within the main data acquisition dialog. The old simulator didn't work well and
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has been deleted.</p>
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</span>Simulated sound sources. New sound source simulator. Accessible from within
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the main data acquisition dialog. The old simulator didn't work well and has
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been deleted.</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
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Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
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@ -4444,8 +4465,8 @@ This would cause memory leaks when multiple files were being analysed off-line
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and would eventually crash PAMGUARD. The way that colours are managed in
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PAMGUARD has been rewritten. </p>
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<p class=MsoNormal>Some issues with Swing fixed that might have been causing
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hang ups on startup especially on Macs/Linux machines</p>
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<p class=MsoNormal>Some issues with Swing fixed that might have been causing hang
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ups on startup especially on Macs/Linux machines</p>
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<p class=MsoNormal> Some tidying up of events and default ports for serial
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devices to improve GPS data collection (particularly for USB-Serial GPS on
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@ -4520,10 +4541,10 @@ Utilities. This will not affect how existing settings files are loaded. </p>
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<p class=MsoNormal><b>Multi-screen environments.</b></p>
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<p class=MsoNormal>In previous versions, if PAMGUARD was configured in a
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multiscreen environment and is then run on a single screen, it was possible
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that the display would not appear. PAMGUARD now checks screen dimensions at
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start up and ensures that the main display is visible. Consequently, program
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start-up takes slightly longer than previously. </p>
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multiscreen environment and is then run on a single screen, it was possible that
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the display would not appear. PAMGUARD now checks screen dimensions at start up
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and ensures that the main display is visible. Consequently, program start-up
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takes slightly longer than previously. </p>
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<p class=MsoNormal><b>Outstanding bugs</b></p>
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@ -4824,8 +4845,8 @@ point located from shore)</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
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Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
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</span>Seismic veto code to detect seismic pulses and then veto out that pulse
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from audio and spectrogram data streams</p>
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</span>Seismic veto code to detect seismic pulses and then veto out that pulse from
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audio and spectrogram data streams</p>
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<p class=MsoListParagraph style='text-indent:-18.0pt'><span style='font-family:
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Symbol'>'</span><span style='font-size:7.0pt;font-family:"Times New Roman",serif'>
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