Better SUD timing

Using latest microsecond time extraction from SUD unpack

src/Acquisition/sud/SUDFileTime.java

@@ -48,7 +48,7 @@ public class SUDFileTime {
 			if (sudMap == null) {
 				return Long.MIN_VALUE;
 			}
-			long t = sudMap.getFirstChunkTime();
+			long t = sudMap.getFirstChunkTimeMillis();
 			if (t != 0) {
 				sudTime = t;
 			}

src/clickDetector/ClickDetector.java

@@ -1096,7 +1096,7 @@ public class ClickDetector extends PamProcess {
 	 * @return true if the tasks complete successfully and the click is to be kept.
 	 *         false otherwise.
 	 */
-	private boolean completeClick(ClickDetection newClick) {
+	public boolean completeClick(ClickDetection newClick) {
 
 		if (newClick.dataType == ClickDetection.CLICK_CLICK) {
 			int nChannels = PamUtils.getNumChannels(newClick.getChannelBitmap());

src/soundtrap/STClickControl.java

@@ -25,6 +25,7 @@
 package soundtrap;
 
 import java.awt.Frame;
+import java.util.ArrayList;
 
 import javax.swing.JMenu;
 import javax.swing.JMenuItem;
@@ -33,7 +34,10 @@ import Acquisition.AcquisitionControl;
 import Acquisition.sud.SUDNotificationManager;
 import PamController.PamController;
 import PamguardMVC.PamRawDataBlock;
+import clickDetector.ClickBTDisplay;
 import clickDetector.ClickControl;
+import clickDetector.ClickDisplay;
+import clickDetector.ClickDisplayManager;
 import soundtrap.sud.SudFileDWVHandler;
 
 /**
@@ -136,5 +140,19 @@ public class STClickControl extends ClickControl {
 		}
 	}
 	
+	/**
+	 * Called when running SUD file data to find and scroll the BT Display's
+	 * @param timeMillis
+	 */
+	public void updateDisplayScrollers(long timeMillis) {
+		ClickDisplayManager dispManager = getDisplayManager();
+		ArrayList<ClickDisplay> dispList = dispManager.getWindowList();
+		for (ClickDisplay display : dispList) {
+			if (display instanceof ClickBTDisplay) {
+				((ClickBTDisplay) display).newScrollTimingData(timeMillis);
+			}
+		}
+	}
+	
 
 }

src/soundtrap/sud/SudFileDWVHandler.java

@@ -46,7 +46,7 @@ public class SudFileDWVHandler implements SUDNotificationHandler {
 	private List<BCLDetectionChunk> bclChunks = new LinkedList();
 
 	int bclDetCount, bclNoiseCount, dwvCount, processedChunks;
-	private long effortStart;
+	private long effortStart, fileStartMicros;
 	private double sampleRate;
 	private ByteConverter byteConverter;
 	private ClickDetector clickDetector;
@@ -73,6 +73,7 @@ public class SudFileDWVHandler implements SUDNotificationHandler {
 //		sampleRate = sudAudioInputStream.getFormat().getFrameRate();
 		// this is the right one
 		sampleRate = sudAudioInputStream.getSudMap().clickDetSampleRate;
+		fileStartMicros = sudAudioInputStream.getSudMap().getFirstChunkTimeMicros();
 		stClickControl.findRawDataBlock().setChannelMap(1);
 		stClickControl.findRawDataBlock().setSampleRate((float) sampleRate, true);
 		stClickControl.getSTAcquisition().acquisitionParameters.sampleRate = (float) sampleRate;
@@ -100,8 +101,12 @@ public class SudFileDWVHandler implements SUDNotificationHandler {
 		String chunkName = "Unknown";
 		int chunkSize = sudChunk.buffer.length;
 		if (sudAudioInputStream.getChunkIDString(chunkID).equals("wav")) {
+			
+			long millis = sudChunk.getChunkHeader().getMillisTime();
+			stClickControl.updateDisplayScrollers(millis);
+			
 			if (sudAudioInputStream.isChunkIDWav(chunkID)) {
-				chunkName = "RECORDINGS";
+//				chunkName = "RECORDINGS";
 				// System.out.printf("Chunk ID %d, size %d, type %s\n", chunkID, chunkSize,
 				// chunkName);
 				// System.out.println("ID: " + chunkID + " This is raw data from detected
@@ -201,8 +206,8 @@ public class SudFileDWVHandler implements SUDNotificationHandler {
 	}
 
 	private void makeClick(BCLDetectionChunk bclChunk, Chunk dwvChunk) {
-		long elapsedSamples = (long) ((bclChunk.getJavaMicros() - effortStart) * (sampleRate / 1e6));
+		long elapsedSamples = (long) ((bclChunk.getJavaMicros() - fileStartMicros) * (sampleRate / 1e6));
-
+		long millis = bclChunk.getJavaMillis();
 		byte[] rawData = dwvChunk.getBuffer();
 		int nBytes = rawData.length;
 		int nSamples = nBytes / Short.BYTES;
@@ -213,8 +218,13 @@ public class SudFileDWVHandler implements SUDNotificationHandler {
 		ClickDetection click = new ClickDetection(1, elapsedSamples, nSamples, clickDetector, channelGroupDetector, 1);
 		click.setWaveData(wavData);
 
+//		if (groupDetector != null) {
+//			groupDetector.
+//		}
+		if (clickDetector.completeClick(click)) {
 			clickDetector.getClickDataBlock().addPamData(click);
 		}
+	}
 
 	private void dwvEffort(long javaMillis, boolean isStart) {
 		System.out.printf("DWV Effort %s at %s\n", isStart ? "Start" : "End", PamCalendar.formatDBDateTime(javaMillis));